Query 010292
Match_columns 513
No_of_seqs 519 out of 2832
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 22:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-60 2.5E-65 495.0 52.3 408 92-513 415-852 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.4E-60 1.4E-64 489.4 51.5 416 84-513 372-794 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.4E-57 5.2E-62 467.7 44.5 405 84-512 89-532 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.4E-55 3E-60 454.7 46.1 370 115-507 153-562 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5.8E-56 1.3E-60 468.2 43.4 384 115-512 182-629 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.8E-54 3.9E-59 456.9 42.3 428 60-512 226-661 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 6.1E-22 1.3E-26 213.7 49.9 331 157-500 568-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.8E-21 8.2E-26 207.6 51.3 356 132-504 513-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 6.6E-21 1.4E-25 184.8 35.8 301 165-509 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 4.2E-20 9E-25 179.2 34.2 304 123-474 40-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 9.9E-18 2.1E-22 170.7 41.1 323 131-468 55-382 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 3.6E-17 7.8E-22 167.1 44.8 359 131-502 140-571 (615)
13 PRK15174 Vi polysaccharide exp 99.8 6.3E-17 1.4E-21 164.8 43.1 293 128-433 86-382 (656)
14 KOG4422 Uncharacterized conser 99.8 1.3E-15 2.8E-20 136.2 37.5 341 153-504 204-592 (625)
15 PRK11447 cellulose synthase su 99.8 4.7E-15 1E-19 161.6 49.2 328 165-507 360-746 (1157)
16 PRK11447 cellulose synthase su 99.8 7.1E-15 1.5E-19 160.2 48.9 328 163-503 276-701 (1157)
17 PRK10049 pgaA outer membrane p 99.8 1.2E-14 2.6E-19 151.4 48.4 393 94-502 26-456 (765)
18 KOG4626 O-linked N-acetylgluco 99.8 1.1E-15 2.3E-20 142.8 33.5 409 79-511 113-535 (966)
19 KOG4626 O-linked N-acetylgluco 99.8 7.5E-16 1.6E-20 143.8 32.1 337 155-508 115-489 (966)
20 TIGR00990 3a0801s09 mitochondr 99.8 5.6E-14 1.2E-18 143.8 43.2 337 158-503 129-538 (615)
21 KOG4422 Uncharacterized conser 99.7 5.5E-14 1.2E-18 125.9 33.6 375 122-507 118-556 (625)
22 PRK10049 pgaA outer membrane p 99.7 4.5E-13 9.7E-18 139.8 43.2 377 117-508 14-426 (765)
23 PRK14574 hmsH outer membrane p 99.7 5E-12 1.1E-16 129.8 47.9 393 95-501 46-512 (822)
24 PRK14574 hmsH outer membrane p 99.7 5.5E-12 1.2E-16 129.4 44.9 370 117-502 33-479 (822)
25 PRK10747 putative protoheme IX 99.6 2.4E-12 5.2E-17 123.9 35.7 284 169-501 97-389 (398)
26 TIGR00540 hemY_coli hemY prote 99.6 7.9E-12 1.7E-16 121.0 38.9 131 159-293 85-219 (409)
27 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.3E-19 134.0 13.2 260 233-500 15-275 (280)
28 COG2956 Predicted N-acetylgluc 99.6 1.9E-11 4.2E-16 106.1 31.3 229 269-505 115-350 (389)
29 PRK10747 putative protoheme IX 99.6 1.7E-11 3.6E-16 118.1 34.4 262 203-509 97-362 (398)
30 PRK09782 bacteriophage N4 rece 99.6 4.7E-10 1E-14 117.9 47.4 323 169-503 355-707 (987)
31 PRK09782 bacteriophage N4 rece 99.6 7.3E-11 1.6E-15 123.8 40.8 349 136-501 360-739 (987)
32 PF13429 TPR_15: Tetratricopep 99.6 3.7E-14 8E-19 130.4 14.4 260 161-430 13-275 (280)
33 TIGR00540 hemY_coli hemY prote 99.6 3E-11 6.5E-16 117.0 34.7 296 201-502 95-399 (409)
34 KOG2003 TPR repeat-containing 99.5 8.5E-12 1.9E-16 112.9 26.0 187 308-502 502-689 (840)
35 KOG4318 Bicoid mRNA stability 99.5 9.6E-13 2.1E-17 128.2 19.6 264 212-512 12-275 (1088)
36 KOG2076 RNA polymerase III tra 99.5 3.1E-10 6.8E-15 111.5 36.8 330 167-500 150-510 (895)
37 COG3071 HemY Uncharacterized e 99.5 1.1E-09 2.4E-14 98.3 36.7 299 161-507 87-395 (400)
38 KOG1155 Anaphase-promoting com 99.5 3.4E-10 7.3E-15 103.2 33.0 335 152-498 160-532 (559)
39 KOG1126 DNA-binding cell divis 99.5 1.5E-11 3.3E-16 116.9 25.4 287 205-506 334-624 (638)
40 KOG1126 DNA-binding cell divis 99.5 5.4E-11 1.2E-15 113.2 27.7 283 172-467 335-620 (638)
41 KOG2076 RNA polymerase III tra 99.5 2.7E-09 5.9E-14 105.1 39.1 361 132-501 153-554 (895)
42 PF13041 PPR_2: PPR repeat fam 99.5 1.3E-13 2.9E-18 89.1 6.4 49 259-307 1-49 (50)
43 COG2956 Predicted N-acetylgluc 99.5 3.6E-10 7.9E-15 98.3 29.1 302 158-468 38-348 (389)
44 KOG2002 TPR-containing nuclear 99.5 1.5E-09 3.2E-14 107.7 36.2 337 162-505 348-748 (1018)
45 COG3071 HemY Uncharacterized e 99.5 1.8E-09 3.8E-14 97.0 33.0 268 203-511 97-364 (400)
46 PF13041 PPR_2: PPR repeat fam 99.4 2.6E-13 5.6E-18 87.8 6.4 50 224-273 1-50 (50)
47 KOG2002 TPR-containing nuclear 99.4 1.3E-09 2.7E-14 108.2 34.3 339 132-481 356-759 (1018)
48 KOG0495 HAT repeat protein [RN 99.4 1.1E-08 2.4E-13 97.3 36.7 328 164-502 524-880 (913)
49 KOG1155 Anaphase-promoting com 99.4 5.5E-09 1.2E-13 95.4 31.2 301 189-501 163-494 (559)
50 KOG4318 Bicoid mRNA stability 99.4 9.2E-11 2E-15 114.7 20.6 263 150-450 19-283 (1088)
51 TIGR02521 type_IV_pilW type IV 99.3 1.5E-09 3.2E-14 97.1 26.7 199 155-357 30-229 (234)
52 PF12569 NARP1: NMDA receptor- 99.3 4.3E-09 9.3E-14 102.5 30.7 132 367-501 194-333 (517)
53 TIGR02521 type_IV_pilW type IV 99.3 1.6E-09 3.5E-14 96.8 25.5 202 261-502 31-232 (234)
54 KOG0547 Translocase of outer m 99.3 2E-08 4.3E-13 92.5 31.1 356 132-500 129-564 (606)
55 KOG0495 HAT repeat protein [RN 99.3 5.1E-07 1.1E-11 86.3 41.1 343 150-503 473-847 (913)
56 PRK12370 invasion protein regu 99.3 2.7E-09 5.9E-14 107.5 27.3 179 242-429 320-499 (553)
57 PRK12370 invasion protein regu 99.3 6.7E-09 1.5E-13 104.6 29.6 170 171-345 319-489 (553)
58 KOG1915 Cell cycle control pro 99.3 4E-07 8.7E-12 83.8 37.3 182 133-325 88-273 (677)
59 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.1E-14 102.1 24.9 238 262-500 200-477 (508)
60 KOG1173 Anaphase-promoting com 99.2 1.2E-07 2.6E-12 89.1 31.7 275 224-508 242-522 (611)
61 KOG2003 TPR repeat-containing 99.2 1.4E-07 3.1E-12 86.0 30.5 346 131-488 250-709 (840)
62 KOG1129 TPR repeat-containing 99.2 2.1E-08 4.6E-13 87.6 22.7 240 265-512 227-468 (478)
63 KOG1156 N-terminal acetyltrans 99.1 1.7E-06 3.7E-11 82.8 36.3 201 117-325 40-248 (700)
64 KOG1915 Cell cycle control pro 99.1 5.6E-06 1.2E-10 76.5 38.5 344 152-503 170-537 (677)
65 KOG1129 TPR repeat-containing 99.1 3.5E-08 7.5E-13 86.3 22.2 227 194-431 227-457 (478)
66 PF12569 NARP1: NMDA receptor- 99.1 4.4E-07 9.6E-12 88.7 31.3 297 121-430 7-332 (517)
67 COG3063 PilF Tfp pilus assembl 99.1 2E-07 4.3E-12 77.9 23.4 200 297-501 36-235 (250)
68 cd05804 StaR_like StaR_like; a 99.1 3.1E-06 6.8E-11 81.0 35.4 193 126-325 14-215 (355)
69 PRK11189 lipoprotein NlpI; Pro 99.0 4.3E-07 9.3E-12 83.8 27.6 155 165-324 35-193 (296)
70 KOG1840 Kinesin light chain [C 99.0 3.6E-07 7.7E-12 88.3 27.2 134 190-323 199-352 (508)
71 KOG4162 Predicted calmodulin-b 99.0 5.8E-06 1.3E-10 80.9 34.6 355 152-512 319-793 (799)
72 KOG1156 N-terminal acetyltrans 99.0 9.2E-06 2E-10 78.0 34.9 367 121-503 9-435 (700)
73 KOG1173 Anaphase-promoting com 99.0 1E-06 2.3E-11 83.0 27.8 279 154-446 242-530 (611)
74 cd05804 StaR_like StaR_like; a 99.0 9.9E-06 2.1E-10 77.6 35.3 164 156-325 6-177 (355)
75 KOG1174 Anaphase-promoting com 99.0 1.3E-05 2.8E-10 72.9 32.5 303 152-468 190-501 (564)
76 KOG3785 Uncharacterized conser 99.0 8.8E-06 1.9E-10 72.4 30.3 152 122-289 58-213 (557)
77 KOG0547 Translocase of outer m 99.0 2.6E-07 5.6E-12 85.4 21.6 221 199-429 335-563 (606)
78 PRK11189 lipoprotein NlpI; Pro 98.9 1.2E-06 2.5E-11 81.0 25.7 182 133-324 41-223 (296)
79 PF12854 PPR_1: PPR repeat 98.9 1.9E-09 4.2E-14 62.4 4.2 32 221-252 2-33 (34)
80 COG3063 PilF Tfp pilus assembl 98.9 2.2E-06 4.7E-11 71.8 23.4 192 158-353 37-229 (250)
81 PF12854 PPR_1: PPR repeat 98.9 2.6E-09 5.7E-14 61.8 3.9 34 255-288 1-34 (34)
82 KOG1174 Anaphase-promoting com 98.9 6.5E-06 1.4E-10 74.7 27.1 292 199-502 205-500 (564)
83 PF04733 Coatomer_E: Coatomer 98.8 2.2E-07 4.7E-12 84.5 15.2 250 167-466 12-264 (290)
84 PF04733 Coatomer_E: Coatomer 98.8 5.5E-07 1.2E-11 81.9 17.6 129 372-502 136-265 (290)
85 PRK04841 transcriptional regul 98.8 7.5E-05 1.6E-09 81.1 36.8 338 166-503 384-761 (903)
86 KOG1914 mRNA cleavage and poly 98.7 0.00025 5.4E-09 67.1 34.9 376 117-501 17-500 (656)
87 KOG1125 TPR repeat-containing 98.7 9.4E-06 2E-10 77.0 22.4 219 166-395 295-526 (579)
88 KOG2047 mRNA splicing factor [ 98.6 0.00054 1.2E-08 66.2 33.1 339 157-505 103-509 (835)
89 KOG2376 Signal recognition par 98.6 0.00069 1.5E-08 64.9 32.6 55 453-507 356-418 (652)
90 KOG2047 mRNA splicing factor [ 98.6 0.00077 1.7E-08 65.2 41.2 301 191-500 249-613 (835)
91 KOG4340 Uncharacterized conser 98.6 0.00011 2.3E-09 64.2 24.8 193 123-329 13-211 (459)
92 KOG2376 Signal recognition par 98.6 0.00091 2E-08 64.1 34.8 49 167-218 90-138 (652)
93 TIGR03302 OM_YfiO outer membra 98.6 2.8E-05 6.1E-10 69.5 21.6 187 154-359 31-231 (235)
94 KOG0624 dsRNA-activated protei 98.5 0.00054 1.2E-08 61.1 31.4 196 155-355 37-247 (504)
95 PRK14720 transcript cleavage f 98.5 6.7E-05 1.5E-09 77.4 26.1 222 153-414 28-268 (906)
96 KOG1125 TPR repeat-containing 98.5 3.8E-05 8.2E-10 73.1 22.3 253 236-495 295-564 (579)
97 PRK04841 transcriptional regul 98.5 0.00054 1.2E-08 74.5 34.9 303 199-502 383-720 (903)
98 KOG1070 rRNA processing protei 98.5 0.00011 2.4E-09 76.8 26.8 227 261-492 1458-1690(1710)
99 KOG3617 WD40 and TPR repeat-co 98.5 0.00014 3.1E-09 72.0 26.1 149 155-321 725-883 (1416)
100 PLN02789 farnesyltranstransfer 98.5 0.00027 5.8E-09 65.4 27.1 132 133-271 52-186 (320)
101 KOG0985 Vesicle coat protein c 98.5 0.0007 1.5E-08 68.8 31.2 244 200-485 1058-1325(1666)
102 KOG3785 Uncharacterized conser 98.5 0.00066 1.4E-08 60.8 27.4 338 155-511 120-497 (557)
103 PLN02789 farnesyltranstransfer 98.5 0.00042 9E-09 64.2 27.7 145 158-306 39-186 (320)
104 KOG0985 Vesicle coat protein c 98.5 0.00099 2.2E-08 67.7 31.5 84 406-499 1282-1367(1666)
105 KOG1070 rRNA processing protei 98.5 0.00015 3.3E-09 75.8 26.6 133 189-324 1457-1592(1710)
106 KOG3616 Selective LIM binding 98.5 0.00017 3.6E-09 70.6 25.0 167 306-499 742-908 (1636)
107 KOG1128 Uncharacterized conser 98.5 1.7E-05 3.8E-10 77.3 18.3 214 230-466 402-615 (777)
108 KOG1128 Uncharacterized conser 98.4 4.3E-05 9.3E-10 74.6 20.3 240 151-412 393-632 (777)
109 TIGR03302 OM_YfiO outer membra 98.4 6.1E-05 1.3E-09 67.3 20.3 185 189-396 32-232 (235)
110 KOG3617 WD40 and TPR repeat-co 98.4 0.003 6.4E-08 63.1 34.8 147 159-322 829-993 (1416)
111 KOG0548 Molecular co-chaperone 98.4 0.001 2.2E-08 63.2 27.9 359 131-502 15-455 (539)
112 KOG4340 Uncharacterized conser 98.4 0.00018 3.9E-09 62.8 21.1 292 192-498 12-335 (459)
113 PRK10370 formate-dependent nit 98.4 3.3E-05 7.1E-10 66.4 16.8 120 168-290 51-173 (198)
114 COG5010 TadD Flp pilus assembl 98.4 0.00011 2.4E-09 63.2 19.5 162 155-321 66-227 (257)
115 COG4783 Putative Zn-dependent 98.4 0.0017 3.7E-08 61.1 28.1 235 132-397 217-455 (484)
116 TIGR00756 PPR pentatricopeptid 98.4 7.1E-07 1.5E-11 52.6 4.2 33 263-295 2-34 (35)
117 PRK14720 transcript cleavage f 98.4 0.00056 1.2E-08 70.8 27.5 237 189-484 30-268 (906)
118 TIGR00756 PPR pentatricopeptid 98.4 8.9E-07 1.9E-11 52.1 4.6 33 475-507 2-34 (35)
119 KOG0548 Molecular co-chaperone 98.3 0.0031 6.7E-08 60.0 29.9 92 374-468 365-456 (539)
120 KOG3616 Selective LIM binding 98.3 0.00068 1.5E-08 66.5 25.4 139 161-321 737-875 (1636)
121 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.2E-11 51.5 3.7 32 263-294 3-34 (34)
122 PF13812 PPR_3: Pentatricopept 98.3 1.5E-06 3.2E-11 50.8 4.4 33 474-506 2-34 (34)
123 PRK15179 Vi polysaccharide bio 98.3 0.00055 1.2E-08 70.1 25.1 183 152-344 82-268 (694)
124 PRK10370 formate-dependent nit 98.3 4.6E-05 9.9E-10 65.5 15.0 93 373-468 79-174 (198)
125 PRK15179 Vi polysaccharide bio 98.3 0.00065 1.4E-08 69.5 25.4 179 119-310 87-269 (694)
126 COG5010 TadD Flp pilus assembl 98.2 7.9E-05 1.7E-09 64.1 15.4 135 152-289 96-230 (257)
127 PRK15359 type III secretion sy 98.2 9.6E-05 2.1E-09 60.0 15.5 90 197-289 31-120 (144)
128 TIGR02552 LcrH_SycD type III s 98.2 9.5E-05 2.1E-09 59.5 14.9 95 192-289 19-113 (135)
129 PRK15359 type III secretion sy 98.2 9.9E-05 2.1E-09 59.9 14.8 97 158-256 26-122 (144)
130 KOG1127 TPR repeat-containing 98.2 0.00091 2E-08 68.0 23.3 110 384-498 800-909 (1238)
131 KOG3081 Vesicle coat complex C 98.1 0.0012 2.6E-08 57.1 20.4 50 380-431 186-235 (299)
132 KOG3081 Vesicle coat complex C 98.1 0.0017 3.6E-08 56.2 21.2 251 165-432 17-271 (299)
133 KOG1914 mRNA cleavage and poly 98.1 0.0048 1.1E-07 58.7 26.1 210 172-385 309-528 (656)
134 COG4783 Putative Zn-dependent 98.1 0.00042 9E-09 65.0 19.0 161 153-321 271-433 (484)
135 PF08579 RPM2: Mitochondrial r 98.1 5.4E-05 1.2E-09 56.1 10.6 79 194-273 29-116 (120)
136 KOG3060 Uncharacterized conser 98.1 0.0046 9.9E-08 53.2 22.8 190 132-326 26-221 (289)
137 PF10037 MRP-S27: Mitochondria 98.1 6.9E-05 1.5E-09 71.0 13.5 134 140-274 50-186 (429)
138 PF08579 RPM2: Mitochondrial r 98.1 6.2E-05 1.4E-09 55.7 10.2 80 229-308 28-116 (120)
139 TIGR02552 LcrH_SycD type III s 98.1 0.00017 3.8E-09 58.0 13.8 107 155-265 16-122 (135)
140 PF01535 PPR: PPR repeat; Int 98.1 4.1E-06 9E-11 47.6 2.9 29 263-291 2-30 (31)
141 KOG2053 Mitochondrial inherita 98.0 0.0056 1.2E-07 61.9 25.9 138 198-343 17-156 (932)
142 PF10037 MRP-S27: Mitochondria 98.0 7.8E-05 1.7E-09 70.6 12.6 121 189-309 65-186 (429)
143 PF06239 ECSIT: Evolutionarily 98.0 0.00012 2.5E-09 61.5 12.1 35 277-311 119-153 (228)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00028 6.1E-09 66.7 16.2 120 195-322 174-294 (395)
145 KOG4162 Predicted calmodulin-b 98.0 0.02 4.2E-07 57.2 35.6 325 134-467 373-783 (799)
146 KOG0624 dsRNA-activated protei 98.0 0.0098 2.1E-07 53.5 29.5 257 165-433 81-371 (504)
147 PF01535 PPR: PPR repeat; Int 98.0 7.6E-06 1.7E-10 46.5 3.3 30 475-504 2-31 (31)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00048 1E-08 56.1 14.8 123 158-286 14-143 (145)
149 KOG3060 Uncharacterized conser 98.0 0.0054 1.2E-07 52.8 21.0 51 275-325 26-81 (289)
150 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00038 8.3E-09 65.8 15.4 125 159-289 172-296 (395)
151 PF09976 TPR_21: Tetratricopep 97.9 0.00057 1.2E-08 55.7 14.2 126 191-322 13-144 (145)
152 PF06239 ECSIT: Evolutionarily 97.9 0.00037 8E-09 58.6 12.2 102 155-276 46-153 (228)
153 KOG1127 TPR repeat-containing 97.8 0.051 1.1E-06 55.9 28.5 180 314-499 801-993 (1238)
154 PF05843 Suf: Suppressor of fo 97.8 0.00068 1.5E-08 61.9 14.0 129 157-289 2-135 (280)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0012 2.5E-08 51.6 13.7 96 160-255 6-105 (119)
156 cd00189 TPR Tetratricopeptide 97.8 0.00054 1.2E-08 50.7 11.0 93 194-289 4-96 (100)
157 PF07079 DUF1347: Protein of u 97.7 0.046 9.9E-07 51.3 33.7 373 124-513 50-530 (549)
158 PF14938 SNAP: Soluble NSF att 97.6 0.0047 1E-07 56.7 17.0 200 268-499 42-263 (282)
159 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.7E-09 52.4 6.0 80 381-462 3-82 (84)
160 cd00189 TPR Tetratricopeptide 97.6 0.0013 2.7E-08 48.6 11.1 91 409-501 6-96 (100)
161 PF05843 Suf: Suppressor of fo 97.6 0.0019 4.1E-08 59.0 14.0 127 372-502 6-136 (280)
162 KOG1130 Predicted G-alpha GTPa 97.6 0.0015 3.3E-08 59.9 12.8 132 372-503 200-345 (639)
163 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0037 8E-08 48.8 14.0 96 192-290 4-105 (119)
164 PRK10153 DNA-binding transcrip 97.6 0.0039 8.4E-08 61.9 16.8 64 260-325 419-482 (517)
165 PF12895 Apc3: Anaphase-promot 97.6 0.0003 6.5E-09 51.1 6.6 81 416-498 2-83 (84)
166 PRK15363 pathogenicity island 97.5 0.0055 1.2E-07 49.3 13.6 92 373-467 41-132 (157)
167 PF14559 TPR_19: Tetratricopep 97.5 0.00042 9.1E-09 47.9 6.6 62 168-232 3-64 (68)
168 PRK02603 photosystem I assembl 97.5 0.0044 9.6E-08 52.1 13.8 84 372-456 40-124 (172)
169 KOG2053 Mitochondrial inherita 97.5 0.17 3.8E-06 51.6 39.6 199 122-327 47-257 (932)
170 PRK02603 photosystem I assembl 97.4 0.014 3E-07 49.1 16.1 86 190-277 35-122 (172)
171 PLN03088 SGT1, suppressor of 97.4 0.0049 1.1E-07 58.5 14.6 100 164-267 10-109 (356)
172 PLN03088 SGT1, suppressor of 97.3 0.0075 1.6E-07 57.3 14.9 104 197-305 9-112 (356)
173 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.4E-08 45.2 7.0 57 163-219 4-60 (65)
174 CHL00033 ycf3 photosystem I as 97.3 0.0086 1.9E-07 50.2 13.4 96 403-499 35-139 (168)
175 PF14938 SNAP: Soluble NSF att 97.3 0.049 1.1E-06 50.0 19.1 114 373-502 100-225 (282)
176 CHL00033 ycf3 photosystem I as 97.3 0.0076 1.6E-07 50.5 12.8 96 189-285 34-137 (168)
177 PRK10866 outer membrane biogen 97.3 0.13 2.7E-06 45.9 22.3 177 161-357 37-238 (243)
178 PRK15363 pathogenicity island 97.2 0.016 3.5E-07 46.7 13.0 96 405-502 37-132 (157)
179 COG4235 Cytochrome c biogenesi 97.0 0.034 7.4E-07 49.5 14.6 127 173-304 139-268 (287)
180 PF04840 Vps16_C: Vps16, C-ter 97.0 0.28 6.1E-06 45.5 29.2 102 373-495 183-284 (319)
181 PRK10153 DNA-binding transcrip 97.0 0.078 1.7E-06 52.8 18.7 59 297-357 421-479 (517)
182 PF13432 TPR_16: Tetratricopep 97.0 0.0043 9.3E-08 42.3 7.2 56 445-501 4-59 (65)
183 KOG0553 TPR repeat-containing 97.0 0.013 2.8E-07 51.9 11.4 101 377-482 91-191 (304)
184 PF13414 TPR_11: TPR repeat; P 96.9 0.0047 1E-07 42.7 7.0 63 156-218 3-66 (69)
185 PF14559 TPR_19: Tetratricopep 96.9 0.0057 1.2E-07 42.1 7.3 63 201-267 2-64 (68)
186 PRK10803 tol-pal system protei 96.9 0.027 5.8E-07 50.7 13.2 96 157-255 144-246 (263)
187 PF13414 TPR_11: TPR repeat; P 96.9 0.0051 1.1E-07 42.5 7.0 63 438-501 3-66 (69)
188 KOG1538 Uncharacterized conser 96.9 0.057 1.2E-06 52.9 15.6 262 223-504 553-848 (1081)
189 COG3898 Uncharacterized membra 96.9 0.37 8E-06 44.6 30.6 284 127-433 93-393 (531)
190 PF12921 ATP13: Mitochondrial 96.8 0.036 7.7E-07 43.4 11.8 83 155-237 1-99 (126)
191 PRK10866 outer membrane biogen 96.8 0.34 7.3E-06 43.2 23.7 56 444-499 181-238 (243)
192 PF03704 BTAD: Bacterial trans 96.8 0.019 4.1E-07 46.8 10.7 69 440-509 64-137 (146)
193 PF12688 TPR_5: Tetratrico pep 96.8 0.099 2.1E-06 40.5 13.8 103 163-272 8-117 (120)
194 PF03704 BTAD: Bacterial trans 96.8 0.0093 2E-07 48.6 8.8 71 158-228 64-138 (146)
195 KOG2796 Uncharacterized conser 96.8 0.32 6.9E-06 42.5 19.6 128 160-289 181-314 (366)
196 PF04840 Vps16_C: Vps16, C-ter 96.8 0.46 9.9E-06 44.1 26.7 111 333-465 179-289 (319)
197 KOG3941 Intermediate in Toll s 96.8 0.012 2.5E-07 51.5 9.2 116 189-324 66-187 (406)
198 PF12688 TPR_5: Tetratrico pep 96.7 0.14 3E-06 39.7 14.0 88 198-288 9-102 (120)
199 PF13371 TPR_9: Tetratricopept 96.7 0.013 2.9E-07 40.9 7.8 56 164-219 3-58 (73)
200 KOG2796 Uncharacterized conser 96.6 0.41 8.9E-06 41.8 19.1 132 192-325 179-315 (366)
201 KOG2041 WD40 repeat protein [G 96.6 0.75 1.6E-05 45.9 20.7 241 188-466 690-951 (1189)
202 KOG2041 WD40 repeat protein [G 96.6 0.98 2.1E-05 45.2 22.8 49 443-491 1026-1075(1189)
203 KOG1130 Predicted G-alpha GTPa 96.6 0.051 1.1E-06 50.3 12.1 264 166-430 27-342 (639)
204 KOG0553 TPR repeat-containing 96.5 0.039 8.6E-07 49.0 11.1 101 199-304 90-190 (304)
205 PRK10803 tol-pal system protei 96.5 0.055 1.2E-06 48.6 12.4 97 190-289 143-245 (263)
206 KOG0550 Molecular chaperone (D 96.5 0.087 1.9E-06 48.9 13.2 158 340-502 178-350 (486)
207 PF13281 DUF4071: Domain of un 96.4 0.82 1.8E-05 43.0 22.6 32 365-396 303-334 (374)
208 COG4235 Cytochrome c biogenesi 96.4 0.18 4E-06 45.0 14.7 114 152-269 152-268 (287)
209 KOG2280 Vacuolar assembly/sort 96.4 1.2 2.6E-05 44.9 26.2 326 147-496 423-793 (829)
210 PF12921 ATP13: Mitochondrial 96.4 0.061 1.3E-06 42.1 10.4 47 293-339 49-96 (126)
211 PF13281 DUF4071: Domain of un 96.4 0.88 1.9E-05 42.8 21.5 168 155-325 140-334 (374)
212 smart00299 CLH Clathrin heavy 96.3 0.33 7.2E-06 39.1 15.0 43 161-203 12-54 (140)
213 PF13371 TPR_9: Tetratricopept 96.3 0.019 4.1E-07 40.1 6.6 55 412-467 4-58 (73)
214 KOG1538 Uncharacterized conser 96.2 0.29 6.2E-06 48.2 15.8 79 378-468 758-847 (1081)
215 KOG3941 Intermediate in Toll s 96.2 0.051 1.1E-06 47.7 9.4 116 153-288 64-186 (406)
216 PF13525 YfiO: Outer membrane 96.1 0.8 1.7E-05 39.6 21.9 51 372-422 146-197 (203)
217 PF09205 DUF1955: Domain of un 96.1 0.39 8.4E-06 37.2 12.7 121 380-505 15-152 (161)
218 PF13170 DUF4003: Protein of u 96.1 1.1 2.5E-05 41.0 18.8 130 206-338 78-224 (297)
219 COG1729 Uncharacterized protei 96.0 0.093 2E-06 46.2 10.7 99 156-255 142-244 (262)
220 PF04053 Coatomer_WDAD: Coatom 96.0 0.36 7.8E-06 47.1 15.8 108 190-325 295-402 (443)
221 COG4700 Uncharacterized protei 95.9 0.78 1.7E-05 37.9 17.9 97 259-357 87-186 (251)
222 PF13424 TPR_12: Tetratricopep 95.9 0.021 4.6E-07 40.5 5.4 61 404-464 6-72 (78)
223 COG4105 ComL DNA uptake lipopr 95.9 1.1 2.3E-05 39.4 19.4 183 156-360 35-233 (254)
224 PF13424 TPR_12: Tetratricopep 95.9 0.031 6.8E-07 39.6 6.2 61 263-323 7-73 (78)
225 COG5107 RNA14 Pre-mRNA 3'-end 95.9 1.1 2.4E-05 42.5 17.1 132 227-362 398-533 (660)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.15 3.3E-06 48.5 12.0 68 152-219 71-141 (453)
227 COG3629 DnrI DNA-binding trans 95.8 0.054 1.2E-06 48.4 8.6 78 158-235 155-236 (280)
228 PF13525 YfiO: Outer membrane 95.8 1.1 2.3E-05 38.8 22.3 57 269-325 13-71 (203)
229 PRK15331 chaperone protein Sic 95.8 0.42 9.2E-06 38.9 12.5 91 373-466 43-133 (165)
230 PRK15331 chaperone protein Sic 95.6 0.97 2.1E-05 36.8 14.9 90 303-395 44-133 (165)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.37 8E-06 46.1 13.4 65 188-255 73-141 (453)
232 COG3898 Uncharacterized membra 95.5 2.1 4.5E-05 39.9 30.3 283 204-504 98-394 (531)
233 COG4700 Uncharacterized protei 95.5 1.2 2.5E-05 37.0 18.4 130 292-424 85-214 (251)
234 KOG1585 Protein required for f 95.5 1.5 3.2E-05 38.1 16.7 205 264-496 34-250 (308)
235 smart00299 CLH Clathrin heavy 95.5 1 2.2E-05 36.1 15.2 127 192-342 9-136 (140)
236 COG3118 Thioredoxin domain-con 95.3 1.6 3.5E-05 39.1 15.6 46 372-417 241-286 (304)
237 PF09205 DUF1955: Domain of un 95.3 1 2.2E-05 35.0 13.9 60 373-434 92-151 (161)
238 COG3118 Thioredoxin domain-con 95.2 2.1 4.5E-05 38.4 15.8 142 164-310 142-286 (304)
239 KOG4555 TPR repeat-containing 95.1 0.94 2E-05 35.0 11.7 92 165-256 52-145 (175)
240 PF04184 ST7: ST7 protein; In 95.0 2.6 5.6E-05 40.8 16.9 63 262-324 260-323 (539)
241 COG4649 Uncharacterized protei 94.9 1.8 3.9E-05 35.4 13.3 134 155-290 58-196 (221)
242 PF08631 SPO22: Meiosis protei 94.8 3.1 6.7E-05 38.1 26.3 166 332-499 85-272 (278)
243 PF13170 DUF4003: Protein of u 94.8 3.2 7E-05 38.2 19.6 130 172-303 78-224 (297)
244 PF13428 TPR_14: Tetratricopep 94.7 0.11 2.4E-06 31.9 5.0 39 158-196 3-41 (44)
245 PF07079 DUF1347: Protein of u 94.5 4.7 0.0001 38.5 26.3 72 300-380 132-207 (549)
246 COG5107 RNA14 Pre-mRNA 3'-end 94.5 4.6 0.0001 38.5 29.4 125 373-501 403-530 (660)
247 PF04053 Coatomer_WDAD: Coatom 94.4 0.73 1.6E-05 45.0 12.4 133 156-321 295-427 (443)
248 KOG2114 Vacuolar assembly/sort 94.3 4.7 0.0001 41.6 17.6 175 230-429 338-516 (933)
249 PF10300 DUF3808: Protein of u 94.2 6.5 0.00014 39.1 24.9 176 138-324 177-375 (468)
250 PF13929 mRNA_stabil: mRNA sta 94.2 4 8.8E-05 36.7 15.4 116 171-286 143-263 (292)
251 KOG2114 Vacuolar assembly/sort 94.2 7.9 0.00017 40.0 20.4 150 155-322 363-516 (933)
252 PF13512 TPR_18: Tetratricopep 94.1 1.7 3.7E-05 34.6 11.6 85 117-202 8-94 (142)
253 KOG2610 Uncharacterized conser 94.1 4.5 9.8E-05 37.0 18.4 163 166-331 113-283 (491)
254 PF10345 Cohesin_load: Cohesin 94.1 8.4 0.00018 39.9 25.8 185 137-324 40-253 (608)
255 PF09613 HrpB1_HrpK: Bacterial 94.0 2.5 5.5E-05 34.3 12.6 52 167-218 21-72 (160)
256 KOG1941 Acetylcholine receptor 94.0 4.9 0.00011 37.2 15.4 46 167-212 17-65 (518)
257 KOG2280 Vacuolar assembly/sort 93.8 8.8 0.00019 39.2 22.9 304 132-464 451-796 (829)
258 PF10300 DUF3808: Protein of u 93.8 7.8 0.00017 38.5 19.1 117 380-500 246-374 (468)
259 KOG1941 Acetylcholine receptor 93.7 3.8 8.2E-05 37.9 14.2 128 372-499 127-272 (518)
260 PF08631 SPO22: Meiosis protei 93.7 5.6 0.00012 36.4 26.2 19 167-185 4-22 (278)
261 KOG0543 FKBP-type peptidyl-pro 93.6 1.9 4.1E-05 40.4 12.5 90 163-254 215-319 (397)
262 COG3629 DnrI DNA-binding trans 93.6 1 2.2E-05 40.6 10.5 78 227-305 154-236 (280)
263 KOG0543 FKBP-type peptidyl-pro 93.4 2.5 5.4E-05 39.7 13.1 92 334-429 260-352 (397)
264 PF04097 Nic96: Nup93/Nic96; 93.4 11 0.00023 39.0 22.2 43 161-203 116-158 (613)
265 COG4105 ComL DNA uptake lipopr 93.2 5.7 0.00012 35.1 20.5 184 117-324 32-232 (254)
266 KOG0550 Molecular chaperone (D 93.1 8 0.00017 36.6 21.6 177 224-407 166-361 (486)
267 KOG4555 TPR repeat-containing 93.1 3.4 7.3E-05 32.1 11.7 91 198-291 51-145 (175)
268 COG1729 Uncharacterized protei 93.1 3.4 7.4E-05 36.7 12.8 102 122-227 144-249 (262)
269 PF02259 FAT: FAT domain; Int 93.1 8.3 0.00018 36.6 18.5 65 437-501 145-212 (352)
270 PF13428 TPR_14: Tetratricopep 92.6 0.5 1.1E-05 28.9 5.3 27 441-467 4-30 (44)
271 PF13176 TPR_7: Tetratricopept 92.3 0.36 7.7E-06 28.0 4.1 26 475-500 1-26 (36)
272 KOG1464 COP9 signalosome, subu 91.9 8.6 0.00019 34.1 16.1 230 115-345 21-286 (440)
273 KOG2066 Vacuolar assembly/sort 91.9 17 0.00037 37.4 23.3 104 162-273 362-467 (846)
274 PF13431 TPR_17: Tetratricopep 91.8 0.23 5.1E-06 28.4 2.9 32 179-210 2-33 (34)
275 COG0457 NrfG FOG: TPR repeat [ 91.6 8.4 0.00018 33.3 29.7 226 239-467 36-265 (291)
276 PF10602 RPN7: 26S proteasome 91.4 3.2 6.9E-05 34.9 10.4 26 192-217 38-63 (177)
277 PF13512 TPR_18: Tetratricopep 91.2 5.9 0.00013 31.6 11.0 74 377-450 20-94 (142)
278 PF13176 TPR_7: Tetratricopept 91.0 0.6 1.3E-05 27.1 4.1 23 193-215 2-24 (36)
279 PF10602 RPN7: 26S proteasome 90.7 8.2 0.00018 32.4 12.2 59 406-464 39-99 (177)
280 PF04184 ST7: ST7 protein; In 90.5 18 0.0004 35.3 21.2 155 273-445 180-338 (539)
281 COG4649 Uncharacterized protei 90.5 8.9 0.00019 31.6 14.1 124 343-466 70-195 (221)
282 TIGR02561 HrpB1_HrpK type III 90.4 8 0.00017 31.0 12.0 52 168-219 22-73 (153)
283 KOG4570 Uncharacterized conser 90.0 3.8 8.2E-05 37.1 9.8 99 189-289 63-163 (418)
284 PF02284 COX5A: Cytochrome c o 89.5 6.9 0.00015 28.9 9.5 70 269-339 16-87 (108)
285 PRK11906 transcriptional regul 89.5 20 0.00043 34.9 14.8 111 383-497 320-431 (458)
286 KOG1585 Protein required for f 89.3 14 0.00031 32.3 19.7 53 373-426 196-250 (308)
287 KOG1920 IkappaB kinase complex 89.2 37 0.00081 37.0 22.6 82 373-464 971-1052(1265)
288 KOG4570 Uncharacterized conser 89.2 2.1 4.5E-05 38.7 7.6 94 373-468 70-165 (418)
289 PF07035 Mic1: Colon cancer-as 89.2 11 0.00025 31.0 16.2 20 373-392 95-114 (167)
290 COG2976 Uncharacterized protei 89.0 13 0.00028 31.4 13.1 95 372-468 94-189 (207)
291 PF07035 Mic1: Colon cancer-as 88.6 13 0.00028 30.8 15.2 21 221-241 24-44 (167)
292 KOG0991 Replication factor C, 88.5 14 0.0003 32.2 11.7 69 413-483 202-282 (333)
293 PRK11906 transcriptional regul 88.0 27 0.00059 33.9 16.5 159 157-320 252-431 (458)
294 KOG1550 Extracellular protein 88.0 34 0.00073 35.0 21.1 87 237-327 260-359 (552)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 8.8 0.00019 28.1 8.7 61 138-198 24-84 (103)
296 PF00637 Clathrin: Region in C 87.3 0.34 7.4E-06 39.1 1.7 85 195-287 12-96 (143)
297 PF09613 HrpB1_HrpK: Bacterial 86.9 15 0.00033 29.9 14.2 52 237-290 21-73 (160)
298 COG4785 NlpI Lipoprotein NlpI, 86.7 20 0.00043 30.9 14.5 161 155-325 98-266 (297)
299 PF13431 TPR_17: Tetratricopep 86.5 0.97 2.1E-05 25.8 2.8 24 470-493 10-33 (34)
300 PF13374 TPR_10: Tetratricopep 86.3 2 4.3E-05 25.5 4.4 27 474-500 3-29 (42)
301 PF13929 mRNA_stabil: mRNA sta 85.9 27 0.00058 31.7 15.7 132 203-334 141-281 (292)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 85.8 8.7 0.00019 28.1 7.7 46 279-324 25-70 (103)
303 PF04097 Nic96: Nup93/Nic96; 85.8 47 0.001 34.4 18.9 64 189-255 111-181 (613)
304 PF00515 TPR_1: Tetratricopept 85.7 2.5 5.4E-05 23.8 4.4 29 474-502 2-30 (34)
305 PF02284 COX5A: Cytochrome c o 85.6 11 0.00024 27.9 8.2 60 139-198 28-87 (108)
306 PF00515 TPR_1: Tetratricopept 85.0 3.5 7.6E-05 23.2 4.8 27 192-218 3-29 (34)
307 PRK11619 lytic murein transgly 85.0 52 0.0011 34.3 28.5 116 381-499 255-372 (644)
308 PF14669 Asp_Glu_race_2: Putat 84.9 22 0.00048 29.9 17.6 55 408-462 137-205 (233)
309 TIGR02561 HrpB1_HrpK type III 84.9 19 0.0004 29.0 10.7 54 344-399 23-76 (153)
310 KOG4279 Serine/threonine prote 84.6 32 0.0007 35.4 13.6 93 134-226 179-280 (1226)
311 KOG0276 Vesicle coat complex C 84.5 6.3 0.00014 39.1 8.7 27 261-287 666-692 (794)
312 PF07719 TPR_2: Tetratricopept 83.9 3.4 7.3E-05 23.1 4.4 29 474-502 2-30 (34)
313 PF07719 TPR_2: Tetratricopept 83.7 4.2 9.2E-05 22.7 4.8 27 192-218 3-29 (34)
314 PF13374 TPR_10: Tetratricopep 83.4 3.2 6.9E-05 24.6 4.4 26 192-217 4-29 (42)
315 KOG1464 COP9 signalosome, subu 82.3 36 0.00078 30.4 17.9 202 221-423 21-251 (440)
316 PF13762 MNE1: Mitochondrial s 82.1 25 0.00053 28.3 10.4 81 229-309 42-128 (145)
317 KOG0276 Vesicle coat complex C 82.0 25 0.00054 35.2 11.5 132 158-322 616-747 (794)
318 PF00637 Clathrin: Region in C 81.9 0.31 6.7E-06 39.4 -0.9 119 373-499 13-135 (143)
319 KOG1550 Extracellular protein 80.6 72 0.0016 32.6 20.7 149 172-326 228-394 (552)
320 PF13181 TPR_8: Tetratricopept 80.5 5.2 0.00011 22.4 4.3 27 475-501 3-29 (34)
321 KOG2610 Uncharacterized conser 80.5 49 0.0011 30.7 23.9 162 200-365 113-283 (491)
322 COG0457 NrfG FOG: TPR repeat [ 80.5 36 0.00078 29.1 29.3 58 373-432 208-265 (291)
323 KOG1258 mRNA processing protei 80.3 68 0.0015 32.2 31.1 130 158-289 47-179 (577)
324 COG4455 ImpE Protein of avirul 80.2 13 0.00029 31.9 8.0 57 160-216 5-61 (273)
325 TIGR03504 FimV_Cterm FimV C-te 80.1 3.6 7.8E-05 25.2 3.5 24 479-502 5-28 (44)
326 PHA02875 ankyrin repeat protei 80.0 62 0.0013 31.6 14.7 78 199-285 8-89 (413)
327 COG4455 ImpE Protein of avirul 79.6 10 0.00023 32.5 7.2 73 373-447 7-81 (273)
328 PF11207 DUF2989: Protein of u 79.4 23 0.0005 30.2 9.2 72 243-315 123-197 (203)
329 PF13174 TPR_6: Tetratricopept 79.3 4.5 9.8E-05 22.3 3.8 24 196-219 6-29 (33)
330 PF07163 Pex26: Pex26 protein; 79.0 31 0.00068 31.0 10.2 54 372-426 123-181 (309)
331 PF13762 MNE1: Mitochondrial s 78.8 32 0.0007 27.6 9.8 89 404-492 40-134 (145)
332 PF02259 FAT: FAT domain; Int 78.6 60 0.0013 30.7 23.2 54 196-254 4-57 (352)
333 COG2909 MalT ATP-dependent tra 77.6 1E+02 0.0022 32.7 24.4 223 273-498 427-684 (894)
334 PF11207 DUF2989: Protein of u 76.4 29 0.00064 29.6 9.0 73 207-281 123-198 (203)
335 PF14669 Asp_Glu_race_2: Putat 76.1 47 0.001 28.0 16.1 66 443-511 137-216 (233)
336 KOG1586 Protein required for f 76.0 54 0.0012 28.7 12.5 24 449-472 165-188 (288)
337 PRK15180 Vi polysaccharide bio 75.9 44 0.00096 32.5 10.9 121 166-289 299-419 (831)
338 KOG2297 Predicted translation 75.8 64 0.0014 29.5 22.0 77 373-458 261-341 (412)
339 TIGR03504 FimV_Cterm FimV C-te 75.8 7 0.00015 23.9 3.9 24 302-325 5-28 (44)
340 COG4785 NlpI Lipoprotein NlpI, 75.8 52 0.0011 28.5 15.3 27 405-431 239-265 (297)
341 KOG2063 Vacuolar assembly/sort 74.7 1.3E+02 0.0028 32.4 16.0 40 446-485 599-638 (877)
342 PF07721 TPR_4: Tetratricopept 74.7 5 0.00011 21.1 2.8 20 478-497 6-25 (26)
343 PF13181 TPR_8: Tetratricopept 74.5 10 0.00022 21.1 4.4 27 192-218 3-29 (34)
344 PF13174 TPR_6: Tetratricopept 74.0 6.3 0.00014 21.7 3.4 26 477-502 4-29 (33)
345 COG3947 Response regulator con 73.8 71 0.0015 29.1 14.6 70 441-511 282-356 (361)
346 TIGR02508 type_III_yscG type I 73.7 34 0.00074 25.4 7.8 59 411-476 47-105 (115)
347 PHA02875 ankyrin repeat protei 72.9 90 0.0019 30.4 13.3 139 164-319 7-155 (413)
348 KOG4234 TPR repeat-containing 72.7 59 0.0013 27.8 9.7 94 374-468 102-198 (271)
349 PF06552 TOM20_plant: Plant sp 72.6 56 0.0012 27.4 10.0 43 277-327 96-138 (186)
350 KOG0403 Neoplastic transformat 72.5 97 0.0021 30.0 22.3 63 441-504 512-574 (645)
351 KOG0890 Protein kinase of the 71.3 2.4E+02 0.0051 34.0 25.1 314 161-505 1388-1734(2382)
352 PF11848 DUF3368: Domain of un 70.4 19 0.00042 22.5 5.1 32 449-480 13-44 (48)
353 PF07163 Pex26: Pex26 protein; 69.6 72 0.0016 28.8 10.1 83 268-352 90-179 (309)
354 PRK10941 hypothetical protein; 69.5 85 0.0018 28.5 11.0 78 192-272 183-262 (269)
355 PF11848 DUF3368: Domain of un 68.3 21 0.00045 22.3 5.0 30 274-303 15-44 (48)
356 TIGR02508 type_III_yscG type I 68.2 47 0.001 24.7 8.6 86 205-299 20-105 (115)
357 COG3947 Response regulator con 68.1 96 0.0021 28.3 17.4 55 373-429 285-339 (361)
358 KOG2582 COP9 signalosome, subu 68.1 1.1E+02 0.0024 28.8 21.3 56 448-503 287-346 (422)
359 KOG1920 IkappaB kinase complex 67.9 2E+02 0.0044 31.8 29.3 56 410-466 972-1027(1265)
360 PF10579 Rapsyn_N: Rapsyn N-te 67.4 25 0.00054 24.7 5.5 47 379-425 18-65 (80)
361 cd08819 CARD_MDA5_2 Caspase ac 67.0 35 0.00076 24.5 6.3 14 204-217 50-63 (88)
362 KOG4648 Uncharacterized conser 66.9 46 0.001 30.8 8.6 52 199-253 106-158 (536)
363 PF10579 Rapsyn_N: Rapsyn N-te 66.2 24 0.00051 24.8 5.2 46 450-495 18-65 (80)
364 PF11846 DUF3366: Domain of un 66.0 30 0.00064 29.5 7.3 33 222-254 140-172 (193)
365 KOG0508 Ankyrin repeat protein 65.0 1.4E+02 0.0031 29.1 15.3 105 139-250 98-204 (615)
366 PF09454 Vps23_core: Vps23 cor 63.4 18 0.00038 24.4 4.2 50 436-486 6-55 (65)
367 COG5159 RPN6 26S proteasome re 62.8 1.2E+02 0.0026 27.5 10.5 200 267-466 9-234 (421)
368 PF11768 DUF3312: Protein of u 62.1 1.4E+02 0.0031 29.9 11.5 59 372-430 413-471 (545)
369 PF08424 NRDE-2: NRDE-2, neces 61.7 1.4E+02 0.0031 28.0 13.4 78 137-218 50-130 (321)
370 KOG4077 Cytochrome c oxidase, 61.6 76 0.0016 24.8 10.0 47 279-325 67-113 (149)
371 PF04762 IKI3: IKI3 family; I 61.5 1.7E+02 0.0037 32.2 13.3 27 406-432 815-843 (928)
372 KOG2062 26S proteasome regulat 61.5 1.6E+02 0.0035 30.7 11.9 185 206-396 39-239 (929)
373 COG5187 RPN7 26S proteasome re 61.1 1.3E+02 0.0028 27.4 13.8 115 221-337 110-233 (412)
374 smart00638 LPD_N Lipoprotein N 61.0 2.1E+02 0.0045 29.6 24.6 248 118-373 308-573 (574)
375 COG2909 MalT ATP-dependent tra 60.8 2.4E+02 0.0051 30.2 30.6 223 238-463 427-684 (894)
376 PF06552 TOM20_plant: Plant sp 60.2 56 0.0012 27.4 7.3 77 172-257 51-138 (186)
377 PF14689 SPOB_a: Sensor_kinase 60.2 26 0.00057 23.3 4.6 25 441-465 26-50 (62)
378 KOG0687 26S proteasome regulat 60.1 1.4E+02 0.003 27.7 10.2 95 404-500 105-208 (393)
379 PF02631 RecX: RecX family; I 59.8 79 0.0017 24.4 9.7 31 313-343 9-39 (121)
380 PF11663 Toxin_YhaV: Toxin wit 59.3 9 0.00019 30.0 2.5 31 451-483 108-138 (140)
381 smart00777 Mad3_BUB1_I Mad3/BU 59.1 65 0.0014 25.2 7.2 41 457-497 82-123 (125)
382 smart00028 TPR Tetratricopepti 59.1 17 0.00037 18.9 3.3 27 475-501 3-29 (34)
383 PF14689 SPOB_a: Sensor_kinase 59.1 44 0.00095 22.3 5.5 25 194-218 27-51 (62)
384 PF11817 Foie-gras_1: Foie gra 59.0 75 0.0016 28.4 8.8 22 372-393 183-204 (247)
385 COG0735 Fur Fe2+/Zn2+ uptake r 58.4 64 0.0014 26.0 7.4 46 301-346 25-70 (145)
386 smart00386 HAT HAT (Half-A-TPR 58.2 27 0.00058 18.8 3.9 26 171-196 2-27 (33)
387 KOG2391 Vacuolar sorting prote 57.5 77 0.0017 29.3 8.3 30 190-219 299-328 (365)
388 KOG0687 26S proteasome regulat 57.4 1.6E+02 0.0036 27.3 13.4 97 227-325 105-210 (393)
389 PF12862 Apc5: Anaphase-promot 56.9 75 0.0016 23.2 7.9 22 197-218 48-69 (94)
390 KOG4521 Nuclear pore complex, 56.7 3.2E+02 0.0069 30.4 13.8 83 263-348 985-1071(1480)
391 KOG2034 Vacuolar sorting prote 56.7 2.8E+02 0.006 29.7 25.6 81 421-503 611-697 (911)
392 cd00280 TRFH Telomeric Repeat 56.6 94 0.002 26.1 7.9 20 447-466 120-139 (200)
393 PRK09687 putative lyase; Provi 56.3 1.6E+02 0.0035 26.9 28.6 234 224-484 35-278 (280)
394 KOG4234 TPR repeat-containing 56.1 1.3E+02 0.0028 25.8 9.7 93 339-433 103-198 (271)
395 PF11846 DUF3366: Domain of un 54.6 65 0.0014 27.4 7.4 32 258-289 141-172 (193)
396 PF07064 RIC1: RIC1; InterPro 54.3 1.7E+02 0.0036 26.5 16.6 58 373-430 185-247 (258)
397 KOG2063 Vacuolar assembly/sort 53.9 3.2E+02 0.007 29.6 16.2 27 192-218 506-532 (877)
398 PRK10564 maltose regulon perip 53.7 29 0.00062 31.7 5.1 28 442-469 261-288 (303)
399 KOG2062 26S proteasome regulat 53.5 2.9E+02 0.0063 29.0 14.0 125 373-501 507-634 (929)
400 PF11123 DNA_Packaging_2: DNA 53.5 51 0.0011 22.7 4.9 34 171-204 12-45 (82)
401 COG1747 Uncharacterized N-term 53.2 2.5E+02 0.0053 28.1 23.9 165 225-396 65-234 (711)
402 PRK10564 maltose regulon perip 52.6 28 0.0006 31.7 4.8 36 223-258 253-289 (303)
403 COG5108 RPO41 Mitochondrial DN 51.9 99 0.0021 31.7 8.7 91 195-288 33-130 (1117)
404 KOG4567 GTPase-activating prot 51.9 1E+02 0.0023 28.2 8.1 57 247-308 264-320 (370)
405 PF08870 DUF1832: Domain of un 51.9 51 0.0011 25.2 5.5 89 207-310 6-96 (113)
406 KOG2908 26S proteasome regulat 51.0 86 0.0019 29.2 7.5 62 405-466 77-143 (380)
407 COG5159 RPN6 26S proteasome re 50.6 2E+02 0.0043 26.2 17.2 124 231-354 8-148 (421)
408 COG0735 Fur Fe2+/Zn2+ uptake r 50.3 1E+02 0.0023 24.8 7.4 64 247-311 7-70 (145)
409 COG5108 RPO41 Mitochondrial DN 49.8 1.2E+02 0.0027 31.0 9.0 73 161-237 33-114 (1117)
410 TIGR03184 DNA_S_dndE DNA sulfu 49.8 56 0.0012 24.6 5.3 91 207-310 5-98 (105)
411 PF10366 Vps39_1: Vacuolar sor 49.4 1.1E+02 0.0025 23.1 7.4 27 440-466 41-67 (108)
412 KOG2396 HAT (Half-A-TPR) repea 49.3 2.8E+02 0.0061 27.6 24.0 281 173-466 268-558 (568)
413 PRK14958 DNA polymerase III su 49.1 3E+02 0.0065 27.9 12.1 30 265-295 250-279 (509)
414 PRK09857 putative transposase; 48.8 1.2E+02 0.0026 27.9 8.5 55 450-505 218-272 (292)
415 PF11663 Toxin_YhaV: Toxin wit 48.6 19 0.00042 28.2 2.8 20 276-295 110-129 (140)
416 smart00777 Mad3_BUB1_I Mad3/BU 48.2 81 0.0018 24.7 6.2 41 422-462 82-123 (125)
417 PRK08691 DNA polymerase III su 48.1 3.2E+02 0.0069 28.8 11.9 19 275-293 259-277 (709)
418 PRK11639 zinc uptake transcrip 48.0 1.1E+02 0.0025 25.4 7.6 37 310-346 39-75 (169)
419 KOG4648 Uncharacterized conser 47.9 1.7E+02 0.0037 27.4 8.9 88 165-254 106-193 (536)
420 cd08819 CARD_MDA5_2 Caspase ac 47.6 1.1E+02 0.0023 22.2 7.5 14 310-323 50-63 (88)
421 PF07575 Nucleopor_Nup85: Nup8 47.5 50 0.0011 33.9 6.5 62 189-253 404-465 (566)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 47.1 1.4E+02 0.003 23.4 9.4 43 385-427 81-123 (126)
423 PF11838 ERAP1_C: ERAP1-like C 46.7 2.4E+02 0.0053 26.2 15.4 126 190-321 129-262 (324)
424 PF11817 Foie-gras_1: Foie gra 46.7 1.5E+02 0.0032 26.6 8.6 24 263-286 220-243 (247)
425 PF09454 Vps23_core: Vps23 cor 46.6 42 0.00092 22.6 3.9 50 154-203 6-55 (65)
426 PF02847 MA3: MA3 domain; Int 46.3 1.3E+02 0.0028 22.8 7.5 22 372-393 7-28 (113)
427 PRK09687 putative lyase; Provi 46.1 2.4E+02 0.0051 25.9 27.5 145 189-346 67-221 (280)
428 COG0790 FOG: TPR repeat, SEL1 45.5 2.4E+02 0.0052 25.7 19.7 117 382-506 128-270 (292)
429 PF10366 Vps39_1: Vacuolar sor 45.4 1.3E+02 0.0029 22.7 7.7 26 264-289 42-67 (108)
430 PF12926 MOZART2: Mitotic-spin 45.2 1.1E+02 0.0025 21.9 7.9 42 247-288 29-70 (88)
431 PF09477 Type_III_YscG: Bacter 45.0 1.3E+02 0.0029 22.7 9.6 77 133-218 21-97 (116)
432 PRK09857 putative transposase; 44.2 2E+02 0.0044 26.5 9.2 64 229-293 209-272 (292)
433 KOG4567 GTPase-activating prot 43.8 1.6E+02 0.0036 27.1 8.0 58 210-273 263-320 (370)
434 KOG4077 Cytochrome c oxidase, 43.3 1.6E+02 0.0035 23.1 8.3 36 150-185 78-113 (149)
435 PRK07003 DNA polymerase III su 42.7 4.6E+02 0.0099 28.1 15.8 33 261-294 246-278 (830)
436 PRK12798 chemotaxis protein; R 41.6 3.4E+02 0.0074 26.4 20.6 81 239-321 125-210 (421)
437 PRK14958 DNA polymerase III su 41.3 3.4E+02 0.0074 27.5 11.0 87 383-472 180-279 (509)
438 COG5187 RPN7 26S proteasome re 41.2 2.8E+02 0.0062 25.3 10.2 23 373-395 121-143 (412)
439 PRK09462 fur ferric uptake reg 41.1 1.6E+02 0.0035 23.7 7.4 36 311-346 32-67 (148)
440 KOG4507 Uncharacterized conser 40.6 2E+02 0.0044 29.1 8.7 100 380-482 620-719 (886)
441 PF01347 Vitellogenin_N: Lipop 40.5 4.5E+02 0.0097 27.4 20.2 114 121-239 347-469 (618)
442 PF10475 DUF2450: Protein of u 40.4 2.7E+02 0.0058 25.7 9.5 23 294-316 195-217 (291)
443 PLN03025 replication factor C 40.0 2.9E+02 0.0063 25.8 9.9 91 413-506 155-257 (319)
444 PRK14951 DNA polymerase III su 39.9 3.6E+02 0.0079 28.0 11.0 85 383-471 185-283 (618)
445 PF10255 Paf67: RNA polymerase 39.8 3.5E+02 0.0076 26.3 10.2 59 407-465 126-191 (404)
446 TIGR03581 EF_0839 conserved hy 39.7 1.1E+02 0.0024 26.4 6.1 43 422-464 191-234 (236)
447 PRK14951 DNA polymerase III su 39.2 4.1E+02 0.0088 27.7 11.3 28 266-294 256-283 (618)
448 PF07304 SRA1: Steroid recepto 39.0 73 0.0016 26.1 4.9 21 125-145 96-117 (157)
449 PF12796 Ank_2: Ankyrin repeat 38.4 1E+02 0.0022 21.8 5.4 15 494-508 73-87 (89)
450 KOG0292 Vesicle coat complex C 37.7 2.5E+02 0.0054 30.1 9.2 71 237-322 654-724 (1202)
451 PRK13342 recombination factor 37.6 4E+02 0.0087 26.0 18.9 23 240-262 244-266 (413)
452 PHA03100 ankyrin repeat protei 37.2 2.5E+02 0.0054 28.0 9.7 241 231-505 37-308 (480)
453 PRK08691 DNA polymerase III su 36.8 4.3E+02 0.0094 27.9 10.9 86 383-471 180-278 (709)
454 PF12926 MOZART2: Mitotic-spin 36.6 1.6E+02 0.0035 21.2 8.4 43 424-466 29-71 (88)
455 PF11768 DUF3312: Protein of u 36.4 4.7E+02 0.01 26.5 11.7 23 195-217 413-435 (545)
456 PF01347 Vitellogenin_N: Lipop 35.6 5.3E+02 0.011 26.8 19.7 48 439-488 558-606 (618)
457 cd07153 Fur_like Ferric uptake 35.4 97 0.0021 23.6 5.0 43 304-346 8-50 (116)
458 PF02847 MA3: MA3 domain; Int 35.3 1.5E+02 0.0034 22.3 6.2 20 197-216 9-28 (113)
459 PRK14963 DNA polymerase III su 35.3 3.9E+02 0.0085 27.0 10.3 86 382-471 176-274 (504)
460 COG0819 TenA Putative transcri 35.2 2.5E+02 0.0053 24.6 7.8 55 254-308 102-167 (218)
461 PF08424 NRDE-2: NRDE-2, neces 35.1 3.8E+02 0.0083 25.1 17.6 118 207-327 48-185 (321)
462 KOG3364 Membrane protein invol 35.1 1.7E+02 0.0036 23.4 5.9 59 171-232 50-110 (149)
463 PRK06645 DNA polymerase III su 35.1 4.9E+02 0.011 26.3 11.2 21 275-295 271-291 (507)
464 PF10475 DUF2450: Protein of u 34.8 3.7E+02 0.008 24.8 9.7 104 232-348 104-214 (291)
465 KOG2066 Vacuolar assembly/sort 34.7 5.8E+02 0.013 27.1 25.4 124 155-289 391-533 (846)
466 COG1747 Uncharacterized N-term 34.6 4.9E+02 0.011 26.1 25.9 168 259-433 64-235 (711)
467 PRK11639 zinc uptake transcrip 34.2 2.7E+02 0.0059 23.1 7.8 40 238-277 37-76 (169)
468 PF09868 DUF2095: Uncharacteri 34.2 1.5E+02 0.0032 22.6 5.2 25 163-187 68-92 (128)
469 cd07920 Pumilio Pumilio-family 33.9 3.9E+02 0.0085 24.8 10.8 58 230-288 22-81 (322)
470 PRK10941 hypothetical protein; 33.8 3.7E+02 0.008 24.5 9.5 58 337-396 187-244 (269)
471 PF09477 Type_III_YscG: Bacter 33.6 2.1E+02 0.0046 21.7 8.4 79 205-291 21-99 (116)
472 COG2137 OraA Uncharacterized p 33.5 2.9E+02 0.0062 23.2 11.4 15 281-295 38-52 (174)
473 PF07064 RIC1: RIC1; InterPro 33.5 3.6E+02 0.0079 24.3 16.3 26 159-184 85-110 (258)
474 KOG2659 LisH motif-containing 33.2 3.4E+02 0.0073 23.9 8.7 20 233-252 71-90 (228)
475 KOG1258 mRNA processing protei 33.2 5.4E+02 0.012 26.2 33.8 186 295-488 296-490 (577)
476 COG4003 Uncharacterized protei 33.2 1.8E+02 0.0038 20.6 5.3 31 443-474 36-66 (98)
477 PRK14956 DNA polymerase III su 33.0 5.2E+02 0.011 25.9 12.4 100 208-331 184-283 (484)
478 PF01475 FUR: Ferric uptake re 32.8 86 0.0019 24.1 4.4 47 301-347 12-58 (120)
479 KOG0889 Histone acetyltransfer 32.7 1.2E+03 0.026 30.1 17.9 62 152-219 2450-2511(3550)
480 PF09868 DUF2095: Uncharacteri 32.5 2E+02 0.0043 21.9 5.7 30 444-474 67-96 (128)
481 PRK14963 DNA polymerase III su 32.4 5.4E+02 0.012 26.0 12.0 31 264-295 245-275 (504)
482 PF10345 Cohesin_load: Cohesin 31.8 6.1E+02 0.013 26.4 37.8 158 128-287 70-251 (608)
483 PF12793 SgrR_N: Sugar transpo 31.8 2.4E+02 0.0052 21.7 8.1 22 264-285 73-94 (115)
484 PRK09462 fur ferric uptake reg 31.7 2.2E+02 0.0048 22.9 6.7 60 393-454 8-68 (148)
485 PRK14956 DNA polymerase III su 31.4 5.5E+02 0.012 25.8 12.2 36 437-472 247-282 (484)
486 COG5116 RPN2 26S proteasome re 31.2 4.4E+02 0.0095 26.8 9.3 171 254-433 52-238 (926)
487 PRK07764 DNA polymerase III su 31.2 3.7E+02 0.0081 29.2 9.9 23 478-500 556-578 (824)
488 KOG0890 Protein kinase of the 30.4 1.1E+03 0.024 29.0 26.6 283 160-468 1424-1732(2382)
489 cd07920 Pumilio Pumilio-family 30.3 4.5E+02 0.0098 24.4 13.5 58 160-217 22-81 (322)
490 KOG0991 Replication factor C, 30.0 4E+02 0.0086 23.7 12.9 39 293-332 236-274 (333)
491 PF04910 Tcf25: Transcriptiona 29.6 5.1E+02 0.011 24.8 15.5 128 152-289 36-167 (360)
492 smart00804 TAP_C C-terminal do 28.9 47 0.001 22.3 1.9 22 204-225 39-60 (63)
493 PF14853 Fis1_TPR_C: Fis1 C-te 28.9 1.6E+02 0.0035 18.8 5.8 35 195-232 6-40 (53)
494 PF13934 ELYS: Nuclear pore co 28.7 4.1E+02 0.0088 23.4 11.9 106 334-450 79-184 (226)
495 PF14561 TPR_20: Tetratricopep 28.7 2.3E+02 0.005 20.6 8.9 30 189-218 21-50 (90)
496 cd00280 TRFH Telomeric Repeat 28.6 3.7E+02 0.0079 22.8 11.9 20 270-289 120-139 (200)
497 PF07678 A2M_comp: A-macroglob 28.5 4.3E+02 0.0093 23.6 8.9 44 207-253 116-159 (246)
498 KOG1498 26S proteasome regulat 28.4 5.5E+02 0.012 24.8 12.3 210 83-309 69-300 (439)
499 KOG4507 Uncharacterized conser 28.4 6.6E+02 0.014 25.8 10.1 146 117-272 568-721 (886)
500 PF03745 DUF309: Domain of unk 28.3 1.8E+02 0.004 19.3 5.5 13 381-393 13-25 (62)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-60 Score=494.98 Aligned_cols=408 Identities=16% Similarity=0.154 Sum_probs=359.6
Q ss_pred HhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010292 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169 (513)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 169 (513)
.++..+...+++.++..+. .|+..+|+.+|.+|+ ++.+.|.++|+.|.+. |+.||..+|+.+|.+|++.
T Consensus 415 ~~~~~g~~~eAl~lf~~M~------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~---Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIR------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA---GLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhC
Confidence 3455666777777777664 389999999999995 4778899999988774 5889999999999999999
Q ss_pred CCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010292 170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (513)
|++++|.++|++|.+.|+ ||..+|+.||.+|++.|++++|+++|++|.+. |+.||..+||.||.+|++.|++++|.++
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999998 59999999999999999999999999999975 9999999999999999999999999999
Q ss_pred HHHHHH--CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292 249 FQEIKD--SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 249 ~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
|++|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 999986 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010292 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404 (513)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (513)
+.||..+|+.+|++|++.|++++|.++++.+.+ .+..+. +++.+|.+|++.|++++|.++|++|...+..| +..
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k---~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvv 720 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK---QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVS 720 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHH
Confidence 999999999999999999988877666655554 333332 35679999999999999999999998876655 577
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|++++..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred h----c-------------------CCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010292 485 T----C-------------------GQRRKVNQVLGLMCKNGYDVPVNAFPS 513 (513)
Q Consensus 485 ~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~S 513 (513)
+ . +..++|..+|++|++.|+.||..||++
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 2 1 224679999999999999999988863
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.4e-60 Score=489.42 Aligned_cols=416 Identities=15% Similarity=0.156 Sum_probs=371.4
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010292 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161 (513)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 161 (513)
.+..++..+++ .++..+++++++++.... -..++...+..++..|+ +..+.|..+|+.|. .||..+|+.
T Consensus 372 ~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~ 442 (1060)
T PLN03218 372 EYIDAYNRLLR-DGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNM 442 (1060)
T ss_pred HHHHHHHHHHH-CcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHH
Confidence 44455666643 344444444444443221 12467777788888884 46778888887663 289999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
+|.+|++.|+++.|.++|++|.+.|+. |..+|+.||.+|++.|++++|.++|++|.+. |+.||..||+.||.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCc
Confidence 999999999999999999999999985 9999999999999999999999999999986 99999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010292 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 68999999999999999999999999999
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.+++ .+|...++.+. +++.++.+|++.|++++|.++|++|.+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf---~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY---DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999888665554 45555554443 4668999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010292 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476 (513)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 476 (513)
+..+ +..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7765 577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010292 477 WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513 (513)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~S 513 (513)
+.++.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999999988864
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-57 Score=467.73 Aligned_cols=405 Identities=11% Similarity=0.138 Sum_probs=348.2
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010292 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTK 161 (513)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 161 (513)
.++.++..+. ..+...++++++..+... .+..||..+|+.++.+|++ ..+.+.+++..|.+. |+.||..+|+.
T Consensus 89 ~~~~~i~~l~-~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~---g~~~~~~~~n~ 163 (697)
T PLN03081 89 SLCSQIEKLV-ACGRHREALELFEILEAG-CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS---GFEPDQYMMNR 163 (697)
T ss_pred eHHHHHHHHH-cCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCcchHHHHH
Confidence 4566666663 344455555555554321 1346899999999999964 677788999888774 58899999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---------------- 225 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---------------- 225 (513)
++.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|+++|++|.+. |+.||
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999976 58899999999999999999999999999764 55555
Q ss_pred -------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292 226 -------------------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 226 -------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
..+||+||++|++.|++++|.++|++|.+ +|..+||.||.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44557788889999999999999999964 7999999999999999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010292 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366 (513)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 366 (513)
|.+.|+.||..||++++.+|++.|++++|.++++.|.+.|+.+|..+|++|+++|+++|++++| .++|++|..++..
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A---~~vf~~m~~~d~~ 392 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA---RNVFDRMPRKNLI 392 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH---HHHHHhCCCCCee
Confidence 9999999999999999999999999999999999999999999999999999999999987755 4556677778887
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcccHhhHHHHH
Q 010292 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-AGWRLCRSLYHSKM 445 (513)
Q Consensus 367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li 445 (513)
+| + .||.+|++.|+.++|.++|++|.+.|..| +..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|
T Consensus 393 t~-n-~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 393 SW-N-ALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eH-H-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 77 3 69999999999999999999999987766 577899999999999999999999999975 69999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-CCCCC
Q 010292 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP-VNAFP 512 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 512 (513)
++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|.++++++. ++.|+ ..+|+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~ 532 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYV 532 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchH
Confidence 9999999999999998876 478999999999999999999999999999986 44554 44553
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-55 Score=454.69 Aligned_cols=370 Identities=12% Similarity=0.135 Sum_probs=317.5
Q ss_pred cccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc------
Q 010292 115 RRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH------ 186 (513)
Q Consensus 115 ~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------ 186 (513)
|..||..+++.++..++ +..+.|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 34667777777777664 35566666666552 2466677777777777777777777777765544
Q ss_pred -----------------------------C-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 187 -----------------------------L-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 187 -----------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
. +|..+||+||.+|++.|++++|.++|++|. .+|.++||++|.+|
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y 300 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGY 300 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHH
Confidence 3 256677899999999999999999999996 36999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
++|++|.+ +|..+||+||.+|++.|+.++|.++++ +|...++.|. ++..++.+|++.|.+++|.++|++|.
T Consensus 381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~---~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE---RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999975 688999999999999998876655554 4444454444 35589999999999999999999998
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010292 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
+.....|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~ 529 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLN 529 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCc
Confidence 76455556788999999999999999999998765 688999999999999999999999999999997654 33578
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 507 (513)
+|..|++.|++.|++++|.+++++|.+.|++..
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999999999999999999999999644
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-56 Score=468.20 Aligned_cols=384 Identities=17% Similarity=0.182 Sum_probs=281.0
Q ss_pred cccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhH
Q 010292 115 RRHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192 (513)
Q Consensus 115 ~~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 192 (513)
+..||..+|+.++++|++ ....+.+++..+.+ .|+.||..+|+.||.+|++.|++++|.++|++|.+ +|..+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s 255 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR---FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCIS 255 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH---cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcch
Confidence 345555555555555543 23334444444443 34566666777788888888888888888888865 37778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------
Q 010292 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP------------- 259 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------- 259 (513)
||++|.+|++.|++++|+++|++|... |+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.|
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 888888888888888888888888764 777776666666666655555555555555555555444
Q ss_pred ------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010292 260 ------------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321 (513)
Q Consensus 260 ------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 321 (513)
|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.
T Consensus 335 k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred hcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 55555666666666677777777777788888888888888888888888888888888888
Q ss_pred HHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010292 322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 401 (513)
|.+.|..++..+|++||++|++.|++++ +.++|++|.+++..+|. .+|.+|++.|+.++|.++|++|... ..|
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~---A~~vf~~m~~~d~vs~~--~mi~~~~~~g~~~eA~~lf~~m~~~--~~p 487 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDK---ALEVFHNIPEKDVISWT--SIIAGLRLNNRCFEALIFFRQMLLT--LKP 487 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHH---HHHHHHhCCCCCeeeHH--HHHHHHHHCCCHHHHHHHHHHHHhC--CCC
Confidence 8888888899999999999999997775 45556778888887773 6999999999999999999999863 455
Q ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc------------------------------ccHhhHHHHHHHHHhc
Q 010292 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR------------------------------LCRSLYHSKMVMYASQ 451 (513)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------------------~~~~~~~~li~~~~~~ 451 (513)
+..||+.++.+|++.|+.+.+.+++..+.+.|+. +|..+||++|.+|++.
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH 567 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 6778888888777777777777777777666654 4556666667777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCCCCCCCC
Q 010292 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYDVPVNAFP 512 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~ 512 (513)
|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+
T Consensus 568 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 7777777777777777777777777777777777777777777777776 567777776664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-54 Score=456.91 Aligned_cols=428 Identities=14% Similarity=0.120 Sum_probs=342.4
Q ss_pred hhhhhhcccCCCCCChhhhhh-----hHHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcC--
Q 010292 60 PTLVRLLSETLTYPDARVRKD-----LTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS-- 132 (513)
Q Consensus 60 ~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~-- 132 (513)
+.++..+++.+....+....+ ...+++.++..+++ .+...++++++.++.. .+..||..+|+.++.+|+.
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~-~g~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-NGECLEGLELFFTMRE--LSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHh-CCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcC
Confidence 677777777776555443322 12356777777644 4455566666665532 2568899999999999854
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
+.+.|.+++..+.+. |+.||..+|+.||.+|++.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++
T Consensus 303 ~~~~a~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 303 DERLGREMHGYVVKT---GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred ChHHHHHHHHHHHHh---CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 677788898888774 4889999999999999999999999999999875 4888999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010292 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292 (513)
Q Consensus 213 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 292 (513)
|++|.+. |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||.||.+|++.|++++|.++|++|.+
T Consensus 377 f~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 377 YALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 9999876 899999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 010292 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372 (513)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+|..+|+.+|.+|++.|+.++|.++|++|.+ +..||..+|+.++.+|++.|.++.+.+++..+.+..-... ...++.
T Consensus 453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~-~~~~na 529 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD-GFLPNA 529 (857)
T ss_pred -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc-ceechH
Confidence 5777888888888888888888888888875 4788888888888888888877777777665554332211 122346
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 452 (513)
||.+|++.|++++|.++|+++ .++..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 888888888888888888776 23566788888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010292 453 RVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP 512 (513)
Q Consensus 453 ~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 512 (513)
++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++| .++||..+|+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~ 661 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 8888888888887 6788888888888888888888888888888877 3677776664
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=6.1e-22 Score=213.72 Aligned_cols=331 Identities=11% Similarity=0.039 Sum_probs=171.0
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...|.+.|++++|.++++.+.+..+.+...|..+..+|...|++++|++.|+++.+. .+.+...+..+..++
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 334444444444444444444444444433334444444444444445555555554444432 122333444444444
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
.+.|++++|..+|+++.+... .+..++..+...+...|++++|.++++.+.+.+ ..+...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555544444321 234444445555555555555555555554433 223444445555555555555555
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
+.++.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+..+.+... ...+...|...|++++|.++|+++.+.
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL--RTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5555555432 222344445555555555555544444333333222221 223555555666666666666666553
Q ss_pred CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010292 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476 (513)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 476 (513)
. |.+..+++.+...+...|+ .+|+.+++++.+.... +...+..+...+...|++++|..+|+++.+.+. .+..++
T Consensus 800 ~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~ 874 (899)
T TIGR02917 800 A--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIR 874 (899)
T ss_pred C--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHH
Confidence 2 3344555666666666666 5566666665543321 334455566666777777777777777776653 366777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 477 WIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
..+..++.+.|++++|.+++++|+
T Consensus 875 ~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 875 YHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777777777777777765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=3.8e-21 Score=207.55 Aligned_cols=356 Identities=10% Similarity=-0.000 Sum_probs=236.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++++.|.+.++.+.+. .+.+..++..+...+.+.|+.++|..+|+++.+.++.+...+..++..|.+.|++++|.+
T Consensus 513 g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTI----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 4555566655555442 233555666666666666666666666666665554455566666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
+++.+... .+.+...|..+..++.+.|++++|...|+++.+... .+...+..+..++.+.|++++|.++|+++.+..
T Consensus 589 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 589 ILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666642 345566667777777777777777777777665432 245566666677777777777777777766532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++......+.. .. ..
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~ 740 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QN--AI 740 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hH--HH
Confidence 2246666777777777777777777777766653 3455566667777777777776666665554443333 11 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
.+..++...|++++|.+.+.++.+. .|.+...+..+...|...|++++|.++|+++.+... .+...++.+...+.+.
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 4677777778888888777777764 344566677777788888888888888888776553 3566777778888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88 77888888877654 34556677788888888999999999988887764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=6.6e-21 Score=184.79 Aligned_cols=301 Identities=14% Similarity=0.070 Sum_probs=204.8
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 010292 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLL 241 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~ 241 (513)
.+...|++++|...|+++.+.++.+..+|..+...+...|++++|.++++.+... +..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456677777888888777766556677777777777777788888777777653 21111 2456667777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010292 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
++.|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777775432 3566777777777777777777777777766442221 1234455556666677777777
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
+++++.+.. +.+...+. .+...+.+.|++++|.++|+++....
T Consensus 202 ~~~~al~~~-p~~~~~~~------------------------------------~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 202 LLKKALAAD-PQCVRASI------------------------------------LLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHhHC-cCCHHHHH------------------------------------HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 766665532 11111111 35666777777777777777777642
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
... ...+++.++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++.
T Consensus 245 p~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 245 PEY-LSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 211 23456777888888888888888888887654 55556677888888888888888888887765 47777888
Q ss_pred HHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCCC
Q 010292 478 IMYYAYAT---CGQRRKVNQVLGLMCKNGYDVPVN 509 (513)
Q Consensus 478 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 509 (513)
.++..+.. .|+.+++..++++|.+.+++|+..
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777664 457888888888888888777664
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.2e-20 Score=179.21 Aligned_cols=304 Identities=13% Similarity=0.071 Sum_probs=229.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC----CHhHHHHHHH
Q 010292 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK----TIGTYNALLG 198 (513)
Q Consensus 123 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~li~ 198 (513)
+..+.....++.+.|...|+.+.+.. +.+..++..+...+.+.|++++|..+++.+...+.. ....+..+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 44555555789999999999988752 346778999999999999999999999999876432 1357889999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHc
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTA 274 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~ 274 (513)
.|.+.|++++|..+|+++.+. -+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..|..+...+.+.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999999999999863 3457789999999999999999999999999986644322 2456677888999
Q ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010292 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 354 (513)
|++++|.++|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.+......+++.
T Consensus 194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~------------------ 254 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK------------------ 254 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH------------------
Confidence 99999999999998753 22467888899999999999999999999887532111222333
Q ss_pred HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292 355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 434 (513)
++.+|...|++++|...++++.+... . ...+..+...+.+.|++++|..+++++.+.
T Consensus 255 ------------------l~~~~~~~g~~~~A~~~l~~~~~~~p--~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-- 311 (389)
T PRK11788 255 ------------------LMECYQALGDEAEGLEFLRRALEEYP--G-ADLLLALAQLLEEQEGPEAAQALLREQLRR-- 311 (389)
T ss_pred ------------------HHHHHHHcCCHHHHHHHHHHHHHhCC--C-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 45556666666666666666665422 2 223466777777778888888877776654
Q ss_pred cccHhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 010292 435 RLCRSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 435 ~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
.|+...++.++..+.. .|+.+++..++++|.+++++|++.
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4666677766666654 457777888888777776666654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=9.9e-18 Score=170.70 Aligned_cols=323 Identities=6% Similarity=-0.063 Sum_probs=254.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++++.|+.+++.+... .+-+...+..++.++...|++++|.+.|+++.+..+.+...|..+...+...|++++|+
T Consensus 55 ~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred cCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 57888999998877664 33356667777777788999999999999999987778889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+.|++..+. -+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.+.+.
T Consensus 131 ~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 131 DLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 999999864 2345678888999999999999999999988765443 23334333 3478899999999999998775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCcc
Q 010292 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR----IKKIEALMRLIPEKEYR 366 (513)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~ 366 (513)
.-.++...+..+..++...|++++|...++...+.. +.+...+..+...|...|++++ |...++...+..+....
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence 433445556666788899999999999999998764 4467788889999999999885 55555555555544443
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH-hhHHHHH
Q 010292 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR-SLYHSKM 445 (513)
Q Consensus 367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li 445 (513)
.+ ..+...+...|++++|...+++.+.. .|.+...+..+...+...|++++|.+.++.+.+.. |+. ..+..+.
T Consensus 286 a~--~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a 359 (656)
T PRK15174 286 IV--TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA 359 (656)
T ss_pred HH--HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 33 25888999999999999999998884 35556667788899999999999999999887654 333 3344456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 010292 446 VMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
.++...|+.++|...|++..+..
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 77889999999999999988764
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=3.6e-17 Score=167.12 Aligned_cols=359 Identities=9% Similarity=-0.064 Sum_probs=278.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++++.|...|+...+ ..|+...|..+..+|.+.|++++|++.++...+.++.+...|..+..+|...|++++|+
T Consensus 140 ~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred cCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3688899999988765 45678889999999999999999999999999887768889999999999999999998
Q ss_pred HHHHHHHHhCCC---------------------------CC----CHHHHHHH---------------------------
Q 010292 211 SLFRDLKKEANI---------------------------SP----SIVTYNTL--------------------------- 232 (513)
Q Consensus 211 ~~~~~m~~~~g~---------------------------~p----~~~~~~~l--------------------------- 232 (513)
.-|.......+. .| ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 766544321110 00 00000000
Q ss_pred HHHH------HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 010292 233 ISVF------GRLLLVDHMEAAFQEIKDSN-LSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLL 303 (513)
Q Consensus 233 i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll 303 (513)
+... ...+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++..+. .|+ ...|..+.
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la 372 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRA 372 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 0000 12257889999999998764 223 4567888888999999999999999998874 455 66888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383 (513)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 383 (513)
..+...|++++|...|+...+.. +.+..+|..+...+...|++++|...++...++.+.....+. .+...+.+.|++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~--~la~~~~~~g~~ 449 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI--QLGVTQYKEGSI 449 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH--HHHHHHHHCCCH
Confidence 99999999999999999988763 456788899999999999999999988888777666555543 478888999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh------hHHHHHHHHHhcCCHHHH
Q 010292 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS------LYHSKMVMYASQRRVEEM 457 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A 457 (513)
++|+..|++.+.. .|.+...++.+...+...|++++|.+.+++..+.....+.. .++.....+...|++++|
T Consensus 450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998874 45566778899999999999999999999987654321111 122222334457999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+++++....+ +.+...+..+...+.+.|++++|.++|++..+.
T Consensus 528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999988765 345567889999999999999999999988654
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6.3e-17 Score=164.85 Aligned_cols=293 Identities=10% Similarity=-0.017 Sum_probs=205.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH
Q 010292 128 KQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD 207 (513)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 207 (513)
....++.+.|.+.++.+... .|-+...+..+...+.+.|++++|.+.+++..+..+.+...+..+...+...|+++
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~----~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAV----NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChH
Confidence 33366788888888877664 23456677777788888888888888888888766557778888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010292 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 208 ~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
+|...++.+... .+.+...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..|++.
T Consensus 162 eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 162 QAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888877653 12233333333 346777888888888888776543344555555667778888888888888888
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 010292 288 KAGPVMPDTNTYLLLLRGYAHSGNLPR----MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363 (513)
Q Consensus 288 ~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 363 (513)
.... .-+...+..+...+...|++++ |...++...+.. +.+...+..+...+.+.|++++|...++......+.
T Consensus 239 l~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 239 LARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 7653 2246677778888888888875 778888777753 346677778888888888888887777666665544
Q ss_pred CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 364 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 433 (513)
....+ ..+...+...|++++|...|+++..... .+...+..+..++...|+.++|...|+...+..
T Consensus 317 ~~~a~--~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 317 LPYVR--AMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 43333 2467778888888888888888776433 233334445566778888888888888776543
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.3e-15 Score=136.21 Aligned_cols=341 Identities=15% Similarity=0.166 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
|.+..+|..+|.++++--..+.|.+++++-.....+ +..+||.+|.+-.-... .+++.+|... .+.||..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHHH
Confidence 446677888888888888888888888877765554 77788887766443322 6777777765 77888888888
Q ss_pred HHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHc----CCCCC----CHHH
Q 010292 232 LISVFGRLLLVDH----MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKA----GPVMP----DTNT 298 (513)
Q Consensus 232 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~p----~~~t 298 (513)
++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888888886654 45677778888888888888888887777776644 3444444432 22322 4566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----cCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch--
Q 010292 299 YLLLLRGYAHSGNLPRMEKIYELVKHH----VDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-- 369 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 369 (513)
|...+..|.+..+.+.|.++..-.... .+.++. ..|..+....|... .....+..+..+.+.-+.+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e---s~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME---SIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccceecCCchh
Confidence 777777777777777777777665542 123321 23445555555544 333456666666665544442
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-cH--------HH-----HHHHHH-------H
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-AV--------DK-----LANFVK-------R 428 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~~-----a~~~~~-------~ 428 (513)
...++.+....|+++-.-+++..+..-|.... ..+..-++..+++.+ +. .. |..+++ +
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 22455666677777777777777777654332 112223334444433 11 10 111111 2
Q ss_pred HHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI----DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 429 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
|.+..+ .....+.+...+.+.|+.++|.+++.-+.+++- .|......-+++...+......|..+++-|...+.
T Consensus 515 ~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 515 QRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 222233 344466777778888888888888888855432 23334444666777778888888888888866554
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=4.7e-15 Score=161.61 Aligned_cols=328 Identities=8% Similarity=-0.012 Sum_probs=197.9
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010292 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 244 (513)
.+.+.|++++|.+.|++..+..+.+...+..+...+...|++++|++.|++..+. -+.+...+..+...+. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHH
Confidence 4456666666666666666655445556666666666666666666666666643 1222333333333332 122333
Q ss_pred HHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010292 245 MEAAFQEIKDSNL--------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 245 A~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 315 (513)
|+.+++.+..... ......+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3333322211000 000112344555555666666666666666553 23 244555556666666666666
Q ss_pred HHHHHHHHhccCCCcHHHHH--------------------------------------------HHHHHHHhcCChhHHH
Q 010292 316 EKIYELVKHHVDGKEFPLIR--------------------------------------------AMICAYSKCSVTDRIK 351 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~~~g~~~~a~ 351 (513)
...++++.+.. +.+...+. .+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 66666655432 11222222 2233445555555544
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010292 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 431 (513)
.+++ . .+.+... ...+...+.+.|++++|++.|++.++. .|.+...+..+...+...|++++|++.++.+.+
T Consensus 594 ~~l~---~-~p~~~~~--~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLR---Q-QPPSTRI--DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHH---h-CCCCchH--HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4433 1 1222222 235788889999999999999999884 455677788999999999999999999998775
Q ss_pred cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCC
Q 010292 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI--DC---SKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYD 505 (513)
Q Consensus 432 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~ 505 (513)
... -+...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|++.|++.. ..|+.
T Consensus 666 ~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 666 TAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 432 2445566777888899999999999999886532 22 23466677888999999999999999874 44565
Q ss_pred CC
Q 010292 506 VP 507 (513)
Q Consensus 506 p~ 507 (513)
|.
T Consensus 745 ~~ 746 (1157)
T PRK11447 745 PT 746 (1157)
T ss_pred CC
Confidence 43
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=7.1e-15 Score=160.18 Aligned_cols=328 Identities=11% Similarity=-0.012 Sum_probs=222.5
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH------------
Q 010292 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN------------ 230 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~------------ 230 (513)
...+...|++++|+..|++..+..+.+...+..+...+.+.|++++|+..|++..+...-.++...|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34455677777777777777776555677777777777777777777777777765311111111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHH----------
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTY---------- 299 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~---------- 299 (513)
.....+.+.|++++|+..|++..+... .+...+..+...+...|++++|++.|++..+. .|+ ...+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 123345667777777777777776533 24556666677777777777777777776653 222 2222
Q ss_pred --------------------------------HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 300 --------------------------------LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 300 --------------------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
..+...+...|++++|.+.+++..+.. +.+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 223344567899999999999988763 34566778888999999999
Q ss_pred hHHHHHHHHHHhCCCCCcccchHH-------------------------------------------HHHHHHHhcCCHH
Q 010292 348 DRIKKIEALMRLIPEKEYRPWLNV-------------------------------------------LLIRVYAKEDCLE 384 (513)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~li~~~~~~~~~~ 384 (513)
++|...++.+.+..+.+.... +. .+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~-~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQV-YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 998888777665544333222 11 1122344445555
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
+|.++++ ..|.+...+..+...+.+.|++++|++.+++..+... .+...+..+...|...|++++|++.++..
T Consensus 591 eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555544 1233444566788888999999999999999887653 25777888999999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
.+.. +.+...+..+..++...|++++|.++++++.+..
T Consensus 664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 7653 3455667778889999999999999999987653
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.2e-14 Score=151.44 Aligned_cols=393 Identities=10% Similarity=-0.026 Sum_probs=270.7
Q ss_pred hcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC
Q 010292 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171 (513)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 171 (513)
...++..++...+.+.... ...+...+..+...+ .++.+.|..+++...+. .|.+...+..+..++...|+
T Consensus 26 ~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVH---MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence 3445556666666554310 122232333333333 46778888888877664 24466777788888888999
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (513)
+++|+..+++..+..+.+.. +..+..++...|+.++|+..++++.+. -+-+...+..+..++...|..+.|++.++.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999988887666777 888888888899999999999988864 233455666677778888888888888876
Q ss_pred HHHCCCCCCH------HHHHHHHHHHH-----HccCH---HHHHHHHHHHHcC-CCCCCHH-HH----HHHHHHHHhcCC
Q 010292 252 IKDSNLSPNV------FTYNYLIAGYM-----TAWMW---GKVEEIYQMMKAG-PVMPDTN-TY----LLLLRGYAHSGN 311 (513)
Q Consensus 252 m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-t~----~~ll~~~~~~g~ 311 (513)
... .|+. .....++.... ..+++ ++|++.++.+.+. .-.|+.. .+ ...+.++...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 654 2331 11222222221 12234 6788888888753 2233321 11 111445567799
Q ss_pred hHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHHHHH
Q 010292 312 LPRMEKIYELVKHHVDG-KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEEMEK 388 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~ 388 (513)
+++|+..|+.+.+.+.. |+. ....+...|...|++++|...++.+....+.... ......+..++...|++++|.+
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999887532 332 1222567899999999988887766544332211 1112246667889999999999
Q ss_pred HHHHHHhcCC-----------CCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010292 389 SINDAFEHKT-----------SVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 389 ~~~~~~~~~~-----------~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (513)
+++++..... .|.+ ...+..+...+...|+.++|+++++++..... -+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHH
Confidence 9999887531 1111 23445677788899999999999999976543 35778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+|++.+++..... +-+...+..+...+...|++++|..+++++++.
T Consensus 411 ~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999865 445677778888999999999999999999864
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-15 Score=142.83 Aligned_cols=409 Identities=10% Similarity=0.066 Sum_probs=299.7
Q ss_pred hhhHHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccC-chhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCC
Q 010292 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS-NGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMT 155 (513)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~ 155 (513)
++.-+.+.-+.+.+ +..++.+.+++....+- ...| ....|..+-.++ .++.+.|.+.|....+ +-|+
T Consensus 113 ~q~ae~ysn~aN~~-kerg~~~~al~~y~~ai----el~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~ 182 (966)
T KOG4626|consen 113 PQGAEAYSNLANIL-KERGQLQDALALYRAAI----ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPD 182 (966)
T ss_pred chHHHHHHHHHHHH-HHhchHHHHHHHHHHHH----hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcc
Confidence 33444444444443 55566666676666553 2234 334555555555 4577778887776655 4455
Q ss_pred HHHHHHH-HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010292 156 KEEYTKG-IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLI 233 (513)
Q Consensus 156 ~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li 233 (513)
.....+- -..+-..|++++|...+.+..+..+.-...|+.|...+-..|+...|+.-|++..+ +.|+- ..|-.|.
T Consensus 183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLG 259 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLG 259 (966)
T ss_pred hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHH
Confidence 5544433 34445579999999999888876554678899999999999999999999999985 46764 6888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCh
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~ 312 (513)
..|...+.++.|...+.+...... -...+|..|...|-..|++|-|+..|++..+ ++|+ ...|+.|..++-..|++
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccch
Confidence 999999999999999988876432 2457788888889999999999999999988 5677 78999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 392 (513)
.+|...+...... .+......+.|...|...|.++.|...+...-+....-..+. + -|...|-+.|++++|+..|++
T Consensus 337 ~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~-n-NLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 337 TEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH-N-NLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh-h-hHHHHHHhcccHHHHHHHHHH
Confidence 9999999998886 334566778899999999999988777665554443333333 3 388889999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010292 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
.++ ..|+....|+.+...|-..|+++.|.+.+.+....+.. -.+.++.|...|-..|++.+|+.-|++.... +||
T Consensus 414 alr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 414 ALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred HHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence 888 67777888999999999999999999999988865532 3567888999999999999999999998864 444
Q ss_pred -HHHHHHHHHHHHh---cCCH----hHHHHHHHHHHHCCCCCCCCCC
Q 010292 473 -KKTFWIMYYAYAT---CGQR----RKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 473 -~~~~~~li~~~~~---~g~~----~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
...|-.++.+.-- -.++ ++..++.++-.+...-|++..+
T Consensus 489 fpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~ 535 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPH 535 (966)
T ss_pred CchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcc
Confidence 2334444443322 1222 3333444444444455665543
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=7.5e-16 Score=143.82 Aligned_cols=337 Identities=15% Similarity=0.071 Sum_probs=243.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-------
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV------- 227 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~------- 227 (513)
-..+|..+.+++-..|++++|+.+++.+.+..+..+..|-.+..++...|+.+.|...|.+..+ +.|+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchh
Confidence 4567777777777777777777777777776666677777777777777777777777766654 234433
Q ss_pred ----------------------------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHH
Q 010292 228 ----------------------------TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 228 ----------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 278 (513)
.|+.|.-.+-..|+...|+.-|++..+. .|+ ...|-.|...|-..+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 2333444444556666666666666553 333 345666666666777777
Q ss_pred HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 279 KVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
+|...|.+... ..|+ .+.|..+...|...|.+|.|+..+++..+.. +.-...|+.|..++-..|++.++...+...
T Consensus 270 ~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 77777666655 3444 5666666667777788888888888777742 223557888888998889888888888777
Q ss_pred HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 010292 358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 437 (513)
-.......... ++ |...|...|.+++|..+|...++ ..|.....++.|...|-+.|++++|+.-+++... ++|+
T Consensus 347 L~l~p~hadam-~N-Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 347 LRLCPNHADAM-NN-LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHhCCccHHHH-HH-HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 77776666655 33 88889999999999999988877 4455566788888889999999999999998875 4454
Q ss_pred -HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010292 438 -RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 438 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
...|+.+...|-..|+.+.|++.+.+.+..+ +-=...++.|...|-..|+..+|+.-+++..+ ++||.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 5678888888999999999999998888754 33356778899999999999999999998765 45553
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=5.6e-14 Score=143.78 Aligned_cols=337 Identities=6% Similarity=-0.093 Sum_probs=251.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+......+.+.|++++|++.|++..+..+ +...|..+..+|.+.|++++|++.++...+. -+.+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 345667778899999999999999887543 6778999999999999999999999999864 2335678899999999
Q ss_pred hcCChhHHHHHHHHHHHCCC----------------------------CCC-HHHHHHHHH-------------------
Q 010292 238 RLLLVDHMEAAFQEIKDSNL----------------------------SPN-VFTYNYLIA------------------- 269 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~----------------------------~p~-~~~~~~li~------------------- 269 (513)
..|++++|+.-|......+- .|. ...+..+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999876654432110 000 000000000
Q ss_pred -------HH----------HHccCHHHHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc
Q 010292 270 -------GY----------MTAWMWGKVEEIYQMMKAGP-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330 (513)
Q Consensus 270 -------~~----------~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (513)
++ ...+++++|.+.|++....+ ..| +...|..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 11257889999999988754 234 35678888888899999999999999988753 334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010292 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410 (513)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 410 (513)
...|..+...+...|++++|...++...+..+.+...+ ..+...+...|++++|...|++.++. .|.+...+..+.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la 440 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY--YHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG 440 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence 66788888899999999999888877766655554444 25788899999999999999999884 455666788888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH
Q 010292 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK------KTFWIMYYAYA 484 (513)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~ 484 (513)
..+.+.|++++|+..+++..+.. +-+...|+.+...+...|++++|++.|++.....-..+. ..++..+..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999987653 235778888999999999999999999998875311111 11222223344
Q ss_pred hcCCHhHHHHHHHHHHHCC
Q 010292 485 TCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 485 ~~g~~~~A~~~~~~m~~~g 503 (513)
..|++++|.+++++..+..
T Consensus 520 ~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIID 538 (615)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 5799999999999987653
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=5.5e-14 Score=125.94 Aligned_cols=375 Identities=12% Similarity=0.152 Sum_probs=275.0
Q ss_pred HHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--hcccCCHH-HHHHHHHHHHhcc-----------
Q 010292 122 AFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF--AGRINNVD-LAADLFAEAANKH----------- 186 (513)
Q Consensus 122 ~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~g~~~-~a~~~~~~m~~~~----------- 186 (513)
+=+.+++..+ +....+.-+|+.|+..+ ++-+...--.|++. |....++. .-.+.|-.|...|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~---~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSEN---VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcC---CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4456666664 46667888999988754 55566666555444 33333333 3345566665443
Q ss_pred --------CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010292 187 --------LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 187 --------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 257 (513)
.| +..+|.+||.++|+--..+.|.+++++-... ..+.+..+||.+|.+-.-.- ..+++.+|....+
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 12 5778999999999999999999999999875 67899999999998754332 2789999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh----ccCC
Q 010292 258 SPNVFTYNYLIAGYMTAWMWGK----VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKH----HVDG 328 (513)
Q Consensus 258 ~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~ 328 (513)
.||..|+|+++.+..+.|+++. |.+++.+|++-||.|...+|..+|..+++.++..+ +..++.++.. ..+.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998874 56788999999999999999999999999998755 4444444433 3455
Q ss_pred C----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292 329 K----EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 329 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
| |...|..-+..|.+..+.+.|.++..+++.-......+ .+|.-+....|.....+.-...|+.|+-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 5 33456677778888889999999988887654433322 2355677888889999999999999887644
Q ss_pred CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC-C--------HHH-----HHHHH---
Q 010292 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR-R--------VEE-----MESVL--- 461 (513)
Q Consensus 399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~--------~~~-----A~~~~--- 461 (513)
.| ...+..-++++....|.++-.-++|..++..|...+...-.-++..+++.+ . +.. |..++
T Consensus 430 ~p-~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 430 FP-HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred cC-CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 44 455677788899999999999999999999987766666656666666544 1 111 11121
Q ss_pred ----HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292 462 ----KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507 (513)
Q Consensus 462 ----~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 507 (513)
.+|...+. .....+...-.+.+.|..++|.+++..+.+.|-+..
T Consensus 509 e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 509 ESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred HhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 23443343 445677778888999999999999999977665433
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=4.5e-13 Score=139.77 Aligned_cols=377 Identities=10% Similarity=-0.031 Sum_probs=275.3
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
.|..+.=-..|....++.+.|++++...... .+.+...+..+..++.+.|++++|.++|++..+..+.+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444444455566678999999998877652 245677799999999999999999999999998877688888899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
...+...|+.++|+..+++..+. .+.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+.+.|.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 99999999999999999999875 244556 888899999999999999999999987543 56666778888888999
Q ss_pred HHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHhc-cCCCcHH-HH----HH
Q 010292 277 WGKVEEIYQMMKAGPVMPDT------NTYLLLLRGYAH-----SGNL---PRMEKIYELVKHH-VDGKEFP-LI----RA 336 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~------~t~~~ll~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 336 (513)
.++|++.++.... .|+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987664 2331 112222332221 2234 6788888888754 2222221 11 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHH
Q 010292 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV--TTVRIMRCIVSSYF 414 (513)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~ 414 (513)
.+..+...|++++|...++.+.+.... ...+....+...|...|++++|+..|+++....... ........+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~-~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQI-IPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133455668888777776665544321 111111236778999999999999999987643222 11234556777889
Q ss_pred hcCcHHHHHHHHHHHHhcCC-----------ccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 415 RCNAVDKLANFVKRAESAGW-----------RLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 415 ~~~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
..|++++|.++++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999876431 123 2244567778889999999999999998775 66788899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010292 481 YAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
..+...|++++|++.+++..+.. |+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCC
Confidence 99999999999999999888753 554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=5e-12 Score=129.76 Aligned_cols=393 Identities=11% Similarity=0.004 Sum_probs=245.4
Q ss_pred cCCChhHHHHHHhhhCCccccccCchh-HHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC
Q 010292 95 NVDDLDKVFRVLDEKGSCLFRRHSNGY-AFVELMK--QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171 (513)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 171 (513)
+.++...++..+.+... ..|+.. ....++. ...+..+.|+..++..... .+........+...|...|+
T Consensus 46 r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 46 RAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS----MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred hCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC
Confidence 44555566666666532 234421 1113322 2346777888887765411 22234444444668888899
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (513)
+++|+++|+++.+..+.+...+..++..+...++.++|++.++++.+. .|+...+-.++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999887777888888888899999999999999998864 57766665555555456666669999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH----------------------------------------------
Q 010292 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ---------------------------------------------- 285 (513)
Q Consensus 252 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~---------------------------------------------- 285 (513)
+.+... -+...+..++.++.+.|-...|.++.+
T Consensus 195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 988653 245555666666666655544444332
Q ss_pred --HHHc-CCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 286 --MMKA-GPVMPDT-----NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 286 --~m~~-~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
.+.. .+-.|.. ....--+-++...|++.++++.++.+...+.+....+-.++.++|...+.+++|..+++.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 2221 1111221 1112234556677777778888887777665444455667777888877777776665544
Q ss_pred HhCCCCC-ccc-c--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------C-CchHHHHHHHHHHHHhcCcHH
Q 010292 358 RLIPEKE-YRP-W--LNVLLIRVYAKEDCLEEMEKSINDAFEHKT------------S-VTTVRIMRCIVSSYFRCNAVD 420 (513)
Q Consensus 358 ~~~~~~~-~~~-~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------~-~~~~~~~~~li~~~~~~~~~~ 420 (513)
..-.... ..+ . ....|.-+|...+++++|..+++++.+... . +.-...+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 3222110 000 0 012467777777888888888877776211 0 111122334556667778888
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|++.++++.... +-|......+.+.+...|.+.+|.+.++.....+ +-+..+....+.++...|++++|..+.+...
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888776544 2366677777777777888888888886665543 4455666677777777788888777776554
Q ss_pred H
Q 010292 501 K 501 (513)
Q Consensus 501 ~ 501 (513)
+
T Consensus 512 ~ 512 (822)
T PRK14574 512 S 512 (822)
T ss_pred h
Confidence 3
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=5.5e-12 Score=129.41 Aligned_cols=370 Identities=9% Similarity=-0.032 Sum_probs=255.9
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010292 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK--EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 194 (513)
.|+..-...++..-.++.+.|++.|+...+. .|+. .++ .++..+...|+.++|+..+++.............
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 4454444455555578899999999888663 3343 234 8888889999999999999998832222344444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.+...|...|++++|+++|+++.+. .+-|...+..++..+...++.++|++.++++... .|+...+-.++..+...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 4467899999999999999999975 2445677778889999999999999999999875 46666664444444445
Q ss_pred cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------
Q 010292 275 WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYE--------------------------------- 320 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~--------------------------------- 320 (513)
++..+|++.++++.+.. | +...+..+..++.+.|-...|.++.+
T Consensus 183 ~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 66667999999999854 5 46666677777776665544444333
Q ss_pred ---------------HHHhc-cCCCc-HH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cccchHHHHHHHH
Q 010292 321 ---------------LVKHH-VDGKE-FP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKE--YRPWLNVLLIRVY 377 (513)
Q Consensus 321 ---------------~~~~~-~~~~~-~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~ 377 (513)
.+... +..|. .. ...-.+-++.+.|+.. ++.+.++.+...+ +.++.-..+.++|
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~---~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA---DLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH---HHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 22211 11121 11 1123333455556544 4444555555433 3344444688999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----------cc--cH-h
Q 010292 378 AKEDCLEEMEKSINDAFEHKT----SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-----------RL--CR-S 439 (513)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~--~~-~ 439 (513)
...++.++|+.+|+++..... .+++......|..+|...+++++|..+++.+.+... .| |- .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 999999999999998876432 122343356788899999999999999999876321 12 21 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+..++..+...|+..+|++.++++.... +-|......+...+...|++.+|.+.++.....
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 23445677888999999999999998765 668888889999999999999999999766544
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=2.4e-12 Score=123.90 Aligned_cols=284 Identities=8% Similarity=0.036 Sum_probs=161.6
Q ss_pred cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 010292 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN--TLISVFGRLLLVDHME 246 (513)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~ 246 (513)
.|++++|.+.+....+........|-....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777766655432112222333334446777777777777777653 45543332 2345667777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 010292 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGNLPRMEKIY 319 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~ 319 (513)
..++++.+... -+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777776653 25666777777777777777777777777766544221 12222222222222223333333
Q ss_pred HHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010292 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399 (513)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (513)
+.+.+. .+.+..... .+...+...|+.++|.+++++..+...
T Consensus 253 ~~lp~~-~~~~~~~~~------------------------------------~~A~~l~~~g~~~~A~~~L~~~l~~~~- 294 (398)
T PRK10747 253 KNQSRK-TRHQVALQV------------------------------------AMAEHLIECDDHDTAQQIILDGLKRQY- 294 (398)
T ss_pred HhCCHH-HhCCHHHHH------------------------------------HHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 332211 112222222 455666666666666666666655322
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
+... .++.+....++.+++.+..+...+... -|...+..+...+.+.|++++|.+.|+...+. .|+..+|..+
T Consensus 295 --~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L 367 (398)
T PRK10747 295 --DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL 367 (398)
T ss_pred --CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 2211 233344455677777777776664432 24555666667777777777777777777654 4677777777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHH
Q 010292 480 YYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~m~~ 501 (513)
...+.+.|+.++|.+++++-..
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777776543
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=7.9e-12 Score=120.99 Aligned_cols=131 Identities=8% Similarity=0.020 Sum_probs=90.4
Q ss_pred HHHHHHHh--cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHH
Q 010292 159 YTKGIKFA--GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLIS 234 (513)
Q Consensus 159 ~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~ 234 (513)
+..+..+. ...|+++.|.+.+....+....+...+-....++.+.|+.+.|.+.+.+..+. .|+.. ..-....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHH
Confidence 34444443 45688888888887776654324444555566677778888888888887654 34442 3333466
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 293 (513)
.+...|+++.|...++++.+.++. +..++..+...+.+.|++++|.+++..+.+.++.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 777788888888888888876532 5667778888888888888888888888877644
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=1.1e-14 Score=133.96 Aligned_cols=260 Identities=11% Similarity=0.065 Sum_probs=97.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292 233 ISVFGRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
...+.+.|++++|.+++++.......| |..-|..+...+...+++++|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444455555555555554332222112 2223333333344455555555555555543322 33344444444 45555
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
+++|.++++...+.. ++...+..++..+...++++++..+++.+.........+..+..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555443332 233334455555555555555555555444333222222223346677778888888999998
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010292 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
+.++. .|.+..+.+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++....+ +.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 88884 45566678889999999999999888888877654 4456677888889999999999999999988765 55
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
|......+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88888899999999999999998887654
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.9e-11 Score=106.08 Aligned_cols=229 Identities=13% Similarity=0.099 Sum_probs=135.0
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHhc
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF----PLIRAMICAYSKC 344 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 344 (513)
.-|...|-+|.|+++|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+..+.. ..|..|...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 3344455555555555555443311 2233444555555555555555555544444333221 1333444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292 345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424 (513)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 424 (513)
.+++.|...++..-...++.+...+ ++.......|+++.|.+.++.+.+.+... -..+...|..+|.+.|+.++...
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASI--ILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhh--hhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455444444433333444444433 57777888889999999888888765443 24567888899999999999999
Q ss_pred HHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHH
Q 010292 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT---CGQRRKVNQVLGLMCK 501 (513)
Q Consensus 425 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 501 (513)
++.++.+....++. -..+-+.-....-.+.|..++.+-..+ +|+...+..++..-.. .|.+.+.+.++++|..
T Consensus 271 fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99988766544443 334444444455566777766655544 6898888888877643 4456777777888865
Q ss_pred CCCC
Q 010292 502 NGYD 505 (513)
Q Consensus 502 ~g~~ 505 (513)
.-++
T Consensus 347 e~l~ 350 (389)
T COG2956 347 EQLR 350 (389)
T ss_pred HHHh
Confidence 5443
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.7e-11 Score=118.07 Aligned_cols=262 Identities=9% Similarity=0.025 Sum_probs=184.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHccCHHH
Q 010292 203 NGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN--YLIAGYMTAWMWGK 279 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~ 279 (513)
.|++++|.+.+....+. .++.. .|.....+..+.|+++.|...|+++.+. .|+...+. .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 69999999888876542 22233 3433445558899999999999999874 35543333 33567888999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH-HHHHhcCChhHHHHHHHHHH
Q 010292 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMR 358 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~ 358 (513)
|.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. ...+- .+|.
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~---------------- 233 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWI---------------- 233 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHH----------------
Confidence 999999998865 2257788899999999999999999999999876543222 11110 1111
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010292 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 438 (513)
.++.......+.+...++++..-+. .+.+......+...+...|+.++|.+++++..+.. ++.
T Consensus 234 -------------~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~ 296 (398)
T PRK10747 234 -------------GLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE 296 (398)
T ss_pred -------------HHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH
Confidence 1111112223344444555444331 23456677889999999999999999999988744 344
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCC
Q 010292 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN 509 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 509 (513)
.. .++.+....++.+++.+..+...++. +-|...+..+.+.|.+.|++++|.+.|+...+. .|+..
T Consensus 297 ~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~ 362 (398)
T PRK10747 297 RL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAY 362 (398)
T ss_pred HH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 22 23444556799999999999999775 557777889999999999999999999999876 35543
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=4.7e-10 Score=117.88 Aligned_cols=323 Identities=10% Similarity=-0.030 Sum_probs=232.2
Q ss_pred cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC---hhH
Q 010292 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK-EANISPSIVTYNTLISVFGRLLL---VDH 244 (513)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~g~~p~~~~~~~li~~~~~~g~---~~~ 244 (513)
.+...++.+.++.|.+....+......+--...+.|+.++|..+|+.... ...-.++....+-++..|.+.+. ..+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 35566666666666665444555566666667788999999999998875 21123344455577777777765 222
Q ss_pred HHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292 245 MEAA----------------------FQEIKDS-NL-SP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 245 A~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 298 (513)
+..+ .+..... +. .+ +...|..+..++.. |+.++|...|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222 1111111 11 23 56777878877776 8899999988887763 477655
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010292 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA 378 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 378 (513)
...+...+...|++++|...|+.+... +|+...+..+..++.+.|+.+.|...++...+........ ...+...+.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~ 587 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHH
Confidence 555566667899999999999987664 3444455667788899999998888877666654222111 112333344
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010292 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 458 (513)
..|++++|...+++.++.. |. ...+..+...+.+.|+.++|...+++..+.... +...++.+...+...|++++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~--P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIA--PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 5599999999999998854 33 567888999999999999999999999876533 5677788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
..+++..+.. +-+...+..+..++...|++++|...+++..+..
T Consensus 664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999998865 5577889999999999999999999999987653
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=7.3e-11 Score=123.80 Aligned_cols=349 Identities=10% Similarity=-0.009 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-cC--CCHhHHHHHHHHHHHcCC---hHHH
Q 010292 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HL--KTIGTYNALLGAYMYNGL---SDKC 209 (513)
Q Consensus 136 ~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~--~~~~~~~~li~~~~~~g~---~~~A 209 (513)
++.+....+.+. .+-+......+--...+.|+.++|.++|+..... +- .+....+-++..|.+.+. ..++
T Consensus 360 ~~~~~~~~~y~~----~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 360 EALRLARLLYQQ----EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 344444445443 1236667777777778889999999999987763 21 145566677777777765 3333
Q ss_pred HHH----------------------HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 010292 210 QSL----------------------FRDLKKEANI-SP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264 (513)
Q Consensus 210 ~~~----------------------~~~m~~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 264 (513)
..+ ++......+. ++ +...|..+..++.. ++.++|...+.+..... |+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHH
Confidence 222 2222222122 33 56777878877776 78888999887777653 665443
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
..+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...++...+.. +.+...+..+...+...
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 33444556899999999999998664 4555566777788899999999999999988764 23334444444445566
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292 345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424 (513)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 424 (513)
|++++|...++...+..+. ... +..+...+.+.|++++|+..+++.+.. .|.+...++.+...+...|+.++|++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999888887777666553 323 335788899999999999999998884 46667788888899999999999999
Q ss_pred HHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 425 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.+++..+... -+...+..+..++...|++++|+..|++..+.. +-+..+.........+..+++.|.+-+++-..
T Consensus 665 ~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 665 MLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999887653 256778889999999999999999999998765 33335555666777777778888777765543
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=3.7e-14 Score=130.42 Aligned_cols=260 Identities=11% Similarity=0.053 Sum_probs=105.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcc-CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKH-LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
.+...+.+.|++++|+++++...... .+ +...|..+...+...++.+.|++.++++... + +-+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence 55777889999999999997654444 34 7777888888888899999999999999864 2 2355667777777 78
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010292 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
.+++++|..++++..+.. ++...+..++..+.+.|+++++.+++++.... ....+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998876543 56677888889999999999999999997753 245678888899999999999999999
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
++++..+.. +.|......++..+...|+.+++.++++.+.+..+.+...+. .+..+|...|+.++|..+|++....
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~--~la~~~~~lg~~~~Al~~~~~~~~~- 243 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD--ALAAAYLQLGRYEEALEYLEKALKL- 243 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH--HHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH--HHHHHhccccccccccccccccccc-
Confidence 999998863 346777888999999999888887887777666544444442 5788888888999999998887773
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 430 (513)
.|.+..+...+..++...|+.++|.++.++..
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -STT-HHHHHHHHHHHT----------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 35566677788888888888888888877653
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=3e-11 Score=116.99 Aligned_cols=296 Identities=9% Similarity=0.030 Sum_probs=207.1
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292 201 MYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
...|+++.|.+.+.+..+. .|+. ..|-....+..+.|+.+.|.+.+++..+....++....-.....+...|++++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4579999999999888753 4654 34455567788899999999999998765433333344445778888999999
Q ss_pred HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHH---HhcCChhH-HHHHH
Q 010292 280 VEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY---SKCSVTDR-IKKIE 354 (513)
Q Consensus 280 a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~-a~~~~ 354 (513)
|.+.++.+.+.+ | +......+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+. .....
T Consensus 172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999865 4 57788899999999999999999999999986544332211111221 21111111 11222
Q ss_pred HHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292 355 ALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 433 (513)
......+.. ...+.....+...+...|+.++|.+++++..+.....................++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 333333321 0112223368889999999999999999999854433321111112223344578888888888876543
Q ss_pred CcccH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 434 WRLCR--SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 434 ~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
. -|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-...
T Consensus 330 p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 D-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred C-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 133 5566888899999999999999996544445799999999999999999999999999986443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=8.5e-12 Score=112.89 Aligned_cols=187 Identities=9% Similarity=0.022 Sum_probs=142.4
Q ss_pred hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
..|+++.|.+.+++.....-......||.= -.+-+.|++++|.+.+-.+..+...+..... .+...|-...+...|+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~--qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLV--QIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHhhCHHHHH
Confidence 357899999999988876444444444432 2456778888887777666655544443332 4677788888999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+++.+... ..|+++.++..|...|-+.|+-..|.+.+-+--. -++.+..+...|...|....-+++|+.+|++..-
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 99865544 7788899999999999999999999887665433 2456788889999999999999999999998753
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHC
Q 010292 468 KIDCSKKTFWIMYYA-YATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 468 ~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 502 (513)
++|+..-|..++.. +.+.|++++|.+++++..+.
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 68999999987755 46789999999999988754
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=9.6e-13 Score=128.17 Aligned_cols=264 Identities=16% Similarity=0.129 Sum_probs=167.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
++-.+... |+.||.+||..+|.-||..|+.+.|- +|.-|.-.....+...|+.++.+..++++.+.+.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556654 88888888888888888888888888 8888887777777888888888888888777665
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
.|...||+.|+.+|...||+.. |+...+ -.-.++..+...|.-......+..+ -..++..+...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~--~c~p~~lpda~- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKI--HCCPHSLPDAE- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhc--ccCcccchhHH-
Confidence 5788888899999988888765 332222 1122333344444332222221111 23344444422
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
..+.-....|.++.+++++..+-......| +..+++-+.... .-..+++...+...-.|+..+|..+++.-.-.
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccch----HHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 245555566667776666544322111111 111233333222 22233333333222257778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010292 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP 512 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 512 (513)
|+++.|..++.+|.++|++.+.+-|+.|+.+ .++...+..+++-|.+.|+.|+.+|+.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 8888888888888888888888877777776 677777888888888888888887763
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=3.1e-10 Score=111.55 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=231.8
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010292 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 246 (513)
...|++++|.+++.++.+..+.+...|.+|...|-..|+.+++...+-..-. -.+-|..-|..+-....+.|++++|.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3449999999999999988777888999999999999999998887766553 23556678888888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010292 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT----NTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
-.|.+.++... ++...+---+..|-+.|+...|.+-|.+|.+..-..|. .....+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999888754 35555555667788889999999999888874321122 23334456667777778888888776
Q ss_pred Hh-ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC-----------------------CcccchHH-HHHHH
Q 010292 323 KH-HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEK-----------------------EYRPWLNV-LLIRV 376 (513)
Q Consensus 323 ~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~-----------------------~~~~~~~~-~li~~ 376 (513)
.. .+-..+...++.++..|.+...++.+...+...... .++ +....+-. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 55 223335556777788888877777665554333220 001 11111111 12223
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010292 377 YAKEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (513)
+......+...-+......... ...+...|.-+..+|...|++.+|+.++..+......-+...|--+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 3333333333333333333322 234567788999999999999999999999987655556778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|.+.|+...... +-+...--.|-..+.+.|+.++|.+.++.|.
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999998764 3344455577788999999999999999876
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.1e-09 Score=98.27 Aligned_cols=299 Identities=10% Similarity=0.028 Sum_probs=187.0
Q ss_pred HHHHHhc--ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 161 KGIKFAG--RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 161 ~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
.+.+++. -.|++.+|+++..+-.+.+......|-.-..+--..|+.+.+-.++.+..+.. -.++...+-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHh
Confidence 3444443 36888888888888766655556666666777777888888888888887642 24555666777777888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCC
Q 010292 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGN 311 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~ 311 (513)
.|+.+.|..-++++.+.+. .+..+......+|.+.|++.++..+...|.+.|+--|. .+|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888887665 36777888888888888888888888888887765443 233333333333333
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
.+.-...|+...+. ...+... ...++.-+.+.|+.++|.++.+
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l------------------------------------~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPEL------------------------------------VVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred chHHHHHHHhccHH-hhcChhH------------------------------------HHHHHHHHHHcCChHHHHHHHH
Confidence 33322222222211 1111111 2235555666667777777766
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010292 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 470 (513)
+..++.-.+. . ...-.+.+.++.+.-++..+.-. ..+..| ..+.+|...|.+.+.|.+|...|+..... .
T Consensus 288 ~~Lk~~~D~~----L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~ 358 (400)
T COG3071 288 DALKRQWDPR----L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--R 358 (400)
T ss_pred HHHHhccChh----H-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--C
Confidence 6666544433 1 12234556666666555555443 333333 55667777777777777777777755543 5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292 471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507 (513)
Q Consensus 471 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 507 (513)
|+..+|+.+.++|.+.|+..+|.+++++-...-..|+
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777777777776654433333
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.4e-10 Score=103.15 Aligned_cols=335 Identities=13% Similarity=0.038 Sum_probs=221.3
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH-----------------------------HHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-----------------------------AYMY 202 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~-----------------------------~~~~ 202 (513)
...|...+-...-.+-+.|..+.|.+.|......-+..-..|..|.. ++-.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 33354444444455567788888888877765532222222222221 2222
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHccCHH-H
Q 010292 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYLIAGYMTAWMWG-K 279 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~-~ 279 (513)
..+.++++.-.+..... |+.-+...-+-...+.-...|+++|+.+|+++.+..+- -|..+|..++-.--...... -
T Consensus 240 l~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 23444454444444443 44333332233333334455666666666666654211 14455555543221111111 1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
|..+++ -... -..|+.++.+-|.-.++.+.|...|++..+.+ +.....|+.+-.-|....+...|.+.++...+
T Consensus 319 A~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 319 AQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111111 1112 23466667777777888999999999999874 34667889899999999999999999999999
Q ss_pred CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010292 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 439 (513)
+.+.+...| | -+..+|.-.+...=|+-.|++... ..|.|..+|.+|..+|.+.++.++|++-|++....|-. +..
T Consensus 393 i~p~DyRAW-Y-GLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 393 INPRDYRAW-Y-GLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred cCchhHHHH-h-hhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 999999999 5 499999999999999999999887 66888999999999999999999999999999877743 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292 440 LYHSKMVMYASQRRVEEMESVLKEMEN----YKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
.|..|.+.|-+.++.++|...|++..+ .|..-+ .....-|..-+.+.+++++|..+...
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 899999999999999999999887665 243222 22222355667788888887764443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.5e-11 Score=116.92 Aligned_cols=287 Identities=13% Similarity=0.046 Sum_probs=216.6
Q ss_pred ChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHccCHHHHH
Q 010292 205 LSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 205 ~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
+..+|+..|..+... .+|+ ....-+..+|...+++++|+++|+.+.+... .-+...|.+.+..+-+. -++
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 467888999886543 4444 4556677889999999999999999886431 22677888887655332 222
Q ss_pred HHH-HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010292 282 EIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360 (513)
Q Consensus 282 ~~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 360 (513)
..+ +++.... +-...+|.++.++|.-.++.+.|++.|++.++.+ +....+|+.+-.-+.....+|.|...++....+
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 2222211 2357899999999999999999999999988853 226677887777788888888888888888888
Q ss_pred CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010292 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440 (513)
Q Consensus 361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 440 (513)
..+++..| | -+...|.+.++++.|+-.|++.++ ..|.+..+...+...+.+.|+.|+|+++++++.....+ |+..
T Consensus 485 ~~rhYnAw-Y-GlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 485 DPRHYNAW-Y-GLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred CchhhHHH-H-hhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 88888889 5 488999999999999999999887 45666667777888889999999999999998766544 2322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010292 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
--.-+..+...+++++|+..++++++. ++-+...|..+.+.|-+.|+.+.|+.-|--|.+..-++
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 223455677789999999999999975 24456778889999999999999988887776654443
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=5.4e-11 Score=113.18 Aligned_cols=283 Identities=10% Similarity=-0.025 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCh-hHHHHHH
Q 010292 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLV-DHMEAAF 249 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~-~~A~~~~ 249 (513)
..+|...|+.++..-..+..+...+..+|...+++++|.++|+.+.+.... .-+...|.+.+--+-+.=.+ -.|..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555555544332223344444555555555555555555555432111 11334444444332211000 0111111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 328 (513)
+.++ -...+|.++.++|.-.++.+.|++.|++..+ +.| ..++|+.+-.-+....++|.|...|....... +
T Consensus 415 ~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 415 DTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred hhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 1111 2344555555555555555555555555554 233 35555555555555555555555555444321 0
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010292 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408 (513)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
.+-..|.-+.-.|.+.++++.|+--++...++.+.+.+-.. .+...+-+.|+.|+|++++++...-....+-. .| -
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~--~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~-~~-~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC--HIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC-KY-H 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh--hhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh-HH-H
Confidence 11222223333455555555554444444444443333221 23444445555555555555555432222111 12 2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
.+..+...+++++|+..++++++.-.+ +...|..+...|.+.|+.+.|+.-|--+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 233444455555555555555543221 2333444555555555555555555555443
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=2.7e-09 Score=105.11 Aligned_cols=361 Identities=8% Similarity=0.002 Sum_probs=258.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++.+.|.+++..+.++ .+.....|-.|..+|-..|+.+++...+-..--.++.|...|-.+.....+.|++++|.-
T Consensus 153 g~~eeA~~i~~EvIkq----dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ----DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 6888899999988886 456888999999999999999999988877766666688999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHH
Q 010292 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY----NYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m 287 (513)
.|.+..+. -+++...+---+..|-+.|+...|..-|.++.......|..-+ -.++..+...++-+.|.+.++..
T Consensus 229 cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999974 3556666666778899999999999999999986542233222 33455666777778899988887
Q ss_pred HcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHH
Q 010292 288 KAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---------------------------VDGKEFPLIRAMIC 339 (513)
Q Consensus 288 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~~~~~~~li~ 339 (513)
... +-.-+...++.++..+.+...++.|......+... +..++..++. ++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhh
Confidence 662 22345567788888888888888888877766551 1223333322 222
Q ss_pred HHHhcCChhHHHHHHHHHHhCC-CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292 340 AYSKCSVTDRIKKIEALMRLIP-EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
++......+........+.+-. ........+.-+..+|...|++.+|+++|..+....... +..+|--+..+|-..|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHHHhh
Confidence 3333332222222222221111 111222224458899999999999999999888754433 46678889999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHh
Q 010292 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY--------KIDCSKKTFWIMYYAYATCGQRR 490 (513)
Q Consensus 419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~ 490 (513)
++.|.+.++........ +...--.|-..+-+.|+.++|.++++.+... +..|+..........+.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 99999999988764422 3444456677788999999999999986533 35566666667778888999988
Q ss_pred HHHHHHHHHHH
Q 010292 491 KVNQVLGLMCK 501 (513)
Q Consensus 491 ~A~~~~~~m~~ 501 (513)
+=+.+-..|..
T Consensus 544 ~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 544 EFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHH
Confidence 86666555544
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.3e-13 Score=89.14 Aligned_cols=49 Identities=37% Similarity=0.667 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010292 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 307 (513)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665566666666666655554
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.6e-10 Score=98.34 Aligned_cols=302 Identities=16% Similarity=0.123 Sum_probs=213.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--VTYNTLISV 235 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~~~~~li~~ 235 (513)
.|-.-++.+. .++.++|.++|-+|.+....+..+.-+|.+.|-+.|..|+|+++...+..+.+..-+. ...-.|..-
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 3433444332 4678899999999988655577778888888999999999999999888652221111 233456677
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCC
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGN 311 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~ 311 (513)
|...|-++.|+.+|..+.+.|. --......|+..|-...+|++|+++-+++.+.|-++. ...|..|...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 8888999999999999887543 2456778889999999999999999998887654443 3566777777777888
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
++.|..++++..+.+. ..+..--.+-+.+...|+++.|.++++...+- .+.+.+-+-..|..+|...|+.++....+.
T Consensus 196 ~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 196 VDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999988887643 24444456677788899999888887766552 334444434468899999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH---hcCCHHHHHHHHHHHHhCC
Q 010292 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA---SQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~ 468 (513)
++.+....+.- -..+-..-....-.+.|..++.+-.. -+|+...+..+|+.-. ..|...+-..+++.|....
T Consensus 274 ~~~~~~~g~~~---~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 274 RAMETNTGADA---ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHccCCccH---HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 88886544332 23333333344555666666665543 3588888998988765 3556777777888887653
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.5e-09 Score=107.73 Aligned_cols=337 Identities=9% Similarity=-0.025 Sum_probs=185.7
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
|...+.+.|+++.+...|+.+.+..+.+..+...|...|+..+ ..++|..++.+..+. ..-|...|-.+...+-
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 4455555555555555555555544445555555555555443 334444444444432 1334444544444443
Q ss_pred hcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCH------HHHHHHHH
Q 010292 238 RLLLVDHMEAAFQEI----KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDT------NTYLLLLR 304 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~t~~~ll~ 304 (513)
... ...++.+|... ...+-.+-....|.+...+...|++++|...|+..+.. ...+|. .+--.+..
T Consensus 426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 332 22224443332 23333456667777777777888888888888776553 112222 22233444
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc------------------
Q 010292 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR------------------ 366 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------------ 366 (513)
.+-..++.+.|.+.|..+.+.. +.-+..|-.+..+....+....+...++..-.....+..
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 4455566777777777666541 111122222221111112222222222111111111111
Q ss_pred --------------cchHH--HHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292 367 --------------PWLNV--LLIRVYAK------------EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 367 --------------~~~~~--~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
+.+|+ .|.+.|.. .+..++|+++|.++++ ..|.+...-|.+.-.++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 12222 23333322 1356778888888777 445556556777778888888
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010292 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY-KIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (513)
++.|..+|....+.... +..+|-.+.++|..+|++-.|+++|+....+ .-.-+......|.+++.+.|.+.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88888888888766542 3455667888888888999999888875543 445567778888888888888888888877
Q ss_pred HHHHCCCC
Q 010292 498 LMCKNGYD 505 (513)
Q Consensus 498 ~m~~~g~~ 505 (513)
..+.....
T Consensus 741 ~a~~~~p~ 748 (1018)
T KOG2002|consen 741 KARHLAPS 748 (1018)
T ss_pred HHHHhCCc
Confidence 76655433
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.8e-09 Score=97.03 Aligned_cols=268 Identities=9% Similarity=-0.007 Sum_probs=194.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010292 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (513)
.|++.+|.++..+-.+. +- -....|..-..+-...|+.+.+...+.+.-+.--.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 69999999999987754 43 33456777778888999999999999999886445677778888888999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010292 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362 (513)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 362 (513)
-++++.+.+-. +........++|.+.|++.....++..+.+.+.-.+...-.-=. .+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-------------~a--------- 231 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-------------QA--------- 231 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-------------HH---------
Confidence 99998886533 57788899999999999999999999999988765544211000 01
Q ss_pred CCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHH
Q 010292 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442 (513)
Q Consensus 363 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 442 (513)
+..++.-....+..+.-...+++.-.+- ..++.+-.+++.-+.+.|+.++|.+++++..+.+..|+...
T Consensus 232 -------~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-- 300 (400)
T COG3071 232 -------WEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-- 300 (400)
T ss_pred -------HHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--
Confidence 0012222222233333334444433321 12344566788889999999999999999999998877322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010292 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
.-.+.+-++.+.=++..++-.... +-++..+.+|..-|.+++.|.+|.+.|+...+. .|+..+|
T Consensus 301 --~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~ 364 (400)
T COG3071 301 --LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDY 364 (400)
T ss_pred --HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhH
Confidence 235667788888888877766543 345578999999999999999999999966554 5666655
No 46
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=2.6e-13 Score=87.80 Aligned_cols=50 Identities=38% Similarity=0.644 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010292 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66677777777777777777777777777777777777777777776653
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.3e-09 Score=108.18 Aligned_cols=339 Identities=10% Similarity=0.020 Sum_probs=197.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN----NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD 207 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 207 (513)
++.+.+...|+.+.+. .|-+..+...|...|+..+ ..+.|..++....+..+.|...|-.+...+-...-+.
T Consensus 356 ~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred chHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 3455566666666554 2334455555555555553 4566666666666655446777776666665544333
Q ss_pred HHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH-------HHHHHHHHHHHH
Q 010292 208 KCQSLFRDL----KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS---NLSPNV-------FTYNYLIAGYMT 273 (513)
Q Consensus 208 ~A~~~~~~m----~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-------~~~~~li~~~~~ 273 (513)
. +..|... ... +-.+-....|.+...+...|+++.|...|+..+.. ...+|. .-|| +...+-.
T Consensus 432 s-L~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~ 508 (1018)
T KOG2002|consen 432 S-LDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEE 508 (1018)
T ss_pred H-HHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHh
Confidence 2 5555433 222 33466667777777777777777777777766643 112222 1232 2223333
Q ss_pred ccCHHHHHHHHHHHHcCC---------------------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292 274 AWMWGKVEEIYQMMKAGP---------------------------------VMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g---------------------------------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.++.+.|.++|..+.+.. ..-+...++.+-..+.+..++..|.+-|.
T Consensus 509 l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 445555555555554421 01122223333334444444444444333
Q ss_pred HHHhc-cCCCcHHHHHHHHHHHHhc------------CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292 321 LVKHH-VDGKEFPLIRAMICAYSKC------------SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 321 ~~~~~-~~~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
.+.+. ...+|..+.-+|-+.|... +..++|.+.+...-+..+++.-.- + -+.-.++..|++.+|.
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-N-GIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-N-GIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-c-chhhhhhhccCchHHH
Confidence 33321 1124555444555544321 222333333333333333333322 2 3677788899999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.+|.++.+..... ..+|-.+.++|...|++..|+++|+... +....-+....+.|..++.+.|++.+|.+.+.....
T Consensus 667 dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 667 DIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999875533 3357789999999999999999999765 445555778889999999999999999999988887
Q ss_pred CCCCCCHHHHHHHHH
Q 010292 467 YKIDCSKKTFWIMYY 481 (513)
Q Consensus 467 ~~~~p~~~~~~~li~ 481 (513)
....-....||..+.
T Consensus 745 ~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 745 LAPSNTSVKFNLALV 759 (1018)
T ss_pred hCCccchHHhHHHHH
Confidence 665545556665443
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=1.1e-08 Score=97.30 Aligned_cols=328 Identities=8% Similarity=-0.001 Sum_probs=220.2
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
..|.+.+.++-|..+|....+-.+.+...|......--..|..+....+|++.... ++-....|-...+-+-..|++.
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcH
Confidence 33444555555555555555433334555555555555555566666666666542 3334445555556666778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.|..++.+..+.... +...|-.-+..-....++++|..+|.+... ..|+...|.--+..---.++.++|.+++++..
T Consensus 602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 888888888776543 667787778888888888888888888776 34666666666666666788888888888877
Q ss_pred hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010292 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 403 (513)
+. ++.-...|-.+-+.+-+.++++.|.+++..-.+..+..+..|. .+...=-+.|.+-.|..+++....++ |.+.
T Consensus 679 k~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl--lLakleEk~~~~~rAR~ildrarlkN--Pk~~ 753 (913)
T KOG0495|consen 679 KS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL--LLAKLEEKDGQLVRARSILDRARLKN--PKNA 753 (913)
T ss_pred Hh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH--HHHHHHHHhcchhhHHHHHHHHHhcC--CCcc
Confidence 75 3334456667777788888888887777655555566666664 45555566778888888888877654 4456
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----------------------------CcccHhhHHHHHHHHHhcCCH
Q 010292 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-----------------------------WRLCRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~ 454 (513)
..|-..|+.=.+.|+.+.|..++.+..+.- +..|....-.+...|-...++
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 678888888888999888888777654321 112333344445555666778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+.|.+.|.+....+ +-+..+|.-+...+.++|.-+.-.+++.+....
T Consensus 834 ~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 834 EKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 88888888888765 445567778888888888877777777776543
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.5e-09 Score=95.43 Aligned_cols=301 Identities=11% Similarity=0.019 Sum_probs=212.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-----------------------------HHHHHHHhc
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-----------------------------TLISVFGRL 239 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-----------------------------~li~~~~~~ 239 (513)
|...+-.....+-+.|...+|+..|...... .+-.-..|- .+..++...
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 4444444444556677777777777666542 111222221 122344444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-C-CCHHHHHHHHHHHHhcCChHHHHH
Q 010292 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-M-PDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~-p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
.+.+++..-.+.....|+.-+...-+....+.-...++|+|+.+|+++.+... . -|..+|+.++-.-....+ +.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HH
Confidence 56667777777777777654444444444455566788888888888877531 1 156777777744332222 22
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
.+..-.-.-.+--..|+..+.+-|+-.++.++|..-++..-++.++-...|+ .|.+-|....+...|++-++..++
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWT--LmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWT--LMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHH--HhhHHHHHhcccHHHHHHHHHHHh--
Confidence 2222111111123345666677777778778887778777788888888886 788999999999999999999888
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
..|.|...|-.|.++|.-.+...=|+-+|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+...|.
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 678889999999999999999999999999988654 3478999999999999999999999999998877 44678899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 478 IMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.|.+.|-+.++.++|...|++..+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999887655
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=9.2e-11 Score=114.71 Aligned_cols=263 Identities=10% Similarity=0.059 Sum_probs=126.3
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010292 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
.|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-+..| +...++.++.+....++.+.+. .|...|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence 556777777777777777777777766 67766666665 6666777777766666665554 466667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHH
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYA 307 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~ 307 (513)
|..|+.+|...||+.. |+...+ -.-.+...+...|.......++..+. ..+..||..+ ++.-..
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv 150 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV 150 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence 7777777777776655 222221 01112333444444444444443322 1233344432 222233
Q ss_pred hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
..|-++.+.+++..+....... .... +++-.... ....++.....+...+ ...+.++..++.+-..+|+.+.|.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHH
Confidence 4455555555554432211100 0000 12211111 1122233333333333 222333334555555555555555
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
.++.+|.++|........| .|+-+ .++...+..+++.|.+.|+.|+..|+...+..+.+
T Consensus 225 ~ll~emke~gfpir~HyFw-pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFW-PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHcCCCcccccch-hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 5555555555444322222 22222 44555555555555555555555555544444444
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.5e-09 Score=97.06 Aligned_cols=199 Identities=12% Similarity=-0.016 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.|++..+. .+.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 45667778888888899999999998888766557788888888888889999999999888764 2445667777888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
.+...|++++|...|++....... .....+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 888888999999888888764322 234566667778888888888888888877643 224567777888888888888
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
+|.+.+++..+. .+.+...+..+...+...|+.+.+....+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888888887765 3345555556666666677666665554443
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=4.3e-09 Score=102.50 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=106.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 446 (513)
.|++..+...|...|++++|++++++.++. .|+.+..|..-...+-+.|++.+|.+.++........ |...-+-.+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK 270 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHH
Confidence 455556778888999999999999999984 4666778888899999999999999999999877654 6676777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 447 MYASQRRVEEMESVLKEMENYKIDCSKK------TF--WIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.+.++|++++|.+++......+..|-.. .| .....+|.+.|++..|++-|....+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8899999999999999998877544322 22 2345789999999999988776643
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.6e-09 Score=96.81 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (513)
...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|.+.++...+... .+...+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~----- 103 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLN----- 103 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHH-----
Confidence 4455556666666666666666666665432 12345555556666666666666666665554321 1222222
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010292 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420 (513)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 420 (513)
.+...+...|++++|.+.+++.......+.....+..+...+...|+++
T Consensus 104 -------------------------------~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 104 -------------------------------NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred -------------------------------HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 2455556667777777777776654333333445666777788888888
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|.+.+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 153 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 153 KAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888887765422 4556777788888888888888888888776 34566777778888888888888888887776
Q ss_pred HC
Q 010292 501 KN 502 (513)
Q Consensus 501 ~~ 502 (513)
+.
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 43
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2e-08 Score=92.51 Aligned_cols=356 Identities=9% Similarity=-0.047 Sum_probs=235.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
+.++.|...+.|... ..|| +.-|...-.+|...|+|+++.+.-....+.++.-+..+..-..++-..|++++|+
T Consensus 129 kkY~eAIkyY~~AI~-----l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIE-----LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred ccHHHHHHHHHHHHh-----cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 578899999999987 4567 6677888889999999999998888777765544555555556666666666554
Q ss_pred HH----------------------HHH---------HHH-hCCCCCCHHHHHHHHHHHHhc--------C----------
Q 010292 211 SL----------------------FRD---------LKK-EANISPSIVTYNTLISVFGRL--------L---------- 240 (513)
Q Consensus 211 ~~----------------------~~~---------m~~-~~g~~p~~~~~~~li~~~~~~--------g---------- 240 (513)
.= +++ |.+ +.-+-|+....++....+... +
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 31 111 110 011234444333333332110 0
Q ss_pred ----------ChhHHHHHHHHHHH-CCCCC--C---------HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292 241 ----------LVDHMEAAFQEIKD-SNLSP--N---------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 241 ----------~~~~A~~~~~~m~~-~g~~p--~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 298 (513)
.+..|...+.+-.. ....+ + ..+.+.....+.-.|+...|.+-|+..+...-.++ ..
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SL 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hH
Confidence 11222222211110 00011 1 11222222234457888899999999887543322 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010292 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA 378 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 378 (513)
|.-+..+|....+.++.++.|....+.+. .+..+|..=...+.-.++++.|..-++....+.+.+..+++ -+..+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i--Ql~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI--QLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH--HHHHHHH
Confidence 77788889999999999999999888643 35566666666666667777777777777777777776654 4666667
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhH--HHHHHHHHhc
Q 010292 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLY--HSKMVMYASQ 451 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~--~~li~~~~~~ 451 (513)
+.++++++...|++..++ -|..+.+|+.....+...++++.|.+.|+..++.... .+...+ -.++..- =.
T Consensus 440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hh
Confidence 888999999999999885 3555667999999999999999999999988654322 111111 1122111 24
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+++..|.+++++..+.+ +-....|..|...-.+.|+.++|+++|++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999887 4455689999999999999999999998753
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.30 E-value=5.1e-07 Score=86.34 Aligned_cols=343 Identities=7% Similarity=-0.017 Sum_probs=216.1
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010292 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
.|+..+...|-.=...|-..|.+-.+..+......-|+. -..+|+.-.+.|.+.+.++-|..+|....+- .+-+.
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchh
Confidence 344445555555555555555555555555555555543 2345666666667777777777777777653 34455
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
..|......--..|..+....+|++....-. -....|-....-+...|+...|..++.+..+..-. +...|...+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence 6666666666666777777777777776532 24444555555666678888888888777664322 566777777777
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010292 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 386 (513)
.....++.|..+|.+.... .++..+|.--+....-.++.++|.+..+-..+.-+.-.. .+..+...+-+.++.+.|
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K--l~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK--LWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH--HHHHHhHHHHHHHHHHHH
Confidence 7778888888888776653 456666655555555555555544443322221111111 233566667777788888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.+.|....+ ..|...-.|-.+...=.+.|++-+|..++++..-.+.+ +...|-..|.+-.+.|..+.|..+..+..+
T Consensus 705 R~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 705 REAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877766555 34444556766777667777888888888887766644 667788888888888888888777655544
Q ss_pred C-----------------------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 467 Y-----------------------------KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 467 ~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
. ...-|.+..-.+...|....+++.|.+.|++..+.+
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2 122355666666777777778888888888776553
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=2.7e-09 Score=107.46 Aligned_cols=179 Identities=6% Similarity=-0.058 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010292 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
+++|...+++..+.... +...|..+...+...|++++|...|++..+.+ |+ ...+..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555554443321 34444444444445555555555555544422 22 3344444444555555555555555
Q ss_pred HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010292 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (513)
+..+.... +...+..+...+...|++++|...++...+...++.... ...+..++...|+.++|...+.++... .+
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~-~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPIL-LSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 54443211 111112222233334444444444333222211111111 113444555556666666666554432 22
Q ss_pred chHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m 429 (513)
......+.+...|+..| +.|...++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 22333344444445544 3455544444
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=6.7e-09 Score=104.63 Aligned_cols=170 Identities=6% Similarity=-0.123 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (513)
++++|...+++..+.++.+...|..+...+...|++++|...|++..+. -+.+...|..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3566666666666655555566666666666666666666666666543 12234455555566666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
+..+.... +...+..++..+...|++++|...+++..... .| +...+..+..++...|++++|...++++... .+.
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~ 473 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EIT 473 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cch
Confidence 66554322 11222223333444566666666666654432 12 2333445555555666666666666554433 111
Q ss_pred cHHHHHHHHHHHHhcC
Q 010292 330 EFPLIRAMICAYSKCS 345 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g 345 (513)
+....+.+...|...|
T Consensus 474 ~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS 489 (553)
T ss_pred hHHHHHHHHHHHhccH
Confidence 2233334444444444
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=4e-07 Score=83.78 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=132.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
+...|..+|+...... .-+...|-..+..=.++.++..|..+|+.....-+.-...|---+..=-..|++..|.++
T Consensus 88 e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556888888776543 225667778888888999999999999988775433344565555555667999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010292 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292 (513)
Q Consensus 213 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 292 (513)
|+.-.. ..|+...|++.|+.=.+-+.++.|..++++..- +.|++.+|--....=-+.|+...|..+|+...+.
T Consensus 164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 998874 589999999999999999999999999999886 3589999988888888899999999999887652
Q ss_pred CCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhc
Q 010292 293 MPDTNTYLLLLRGY----AHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 293 ~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~ 325 (513)
--|...-..+..++ .+...++.|.-+|+...+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222223333333 3455566666666655543
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=3.3e-09 Score=102.07 Aligned_cols=238 Identities=14% Similarity=0.078 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcC-----CC-CCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc-----cC-C
Q 010292 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAG-----PV-MPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHH-----VD-G 328 (513)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~ 328 (513)
.+...+...|...|+++.|+.+++...+. |. .|...+. +.+...|...+++++|..+|+++... |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444555666666666666666554331 21 1222222 22445556666666666666655431 11 1
Q ss_pred C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 010292 329 K-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH---- 396 (513)
Q Consensus 329 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 396 (513)
| -..+++.|..+|.+.|++++|+...+...++... .+... .+-+...|+..+++++|..++....+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~-l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ-LSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 1234455555666666666554443322222111 11111 234777788889999999888765541
Q ss_pred -C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC--c-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 010292 397 -K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GW--R-LCRSLYHSKMVMYASQRRVEEMESVLKEMEN- 466 (513)
Q Consensus 397 -~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 466 (513)
+ ..+....+++.|...|...|++++|.++++.+... +. . -....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1 12234678999999999999999999999987532 11 1 1244577888899999999999999986543
Q ss_pred ---CC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 467 ---YK--IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 467 ---~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.| .+-...+|.-|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 22234678899999999999999999988764
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-07 Score=89.10 Aligned_cols=275 Identities=9% Similarity=-0.027 Sum_probs=217.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
-|........+-|-..+++.+..++++++.+.. ++....+-.-|.++...|+..+-..+=.+|.+.- +-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 344444555566677889999999999998764 3567777777889999999888888888888743 22478999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383 (513)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 383 (513)
--|...|+..+|.+.|.+....+. .-...|-.+...|.-.|.-|.|..++....+.-+....|..| +..-|.+.++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccH
Confidence 889999999999999988765432 234568888889999999999998887777777766677653 66778889999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc--ccHhhHHHHHHHHHhcCCHHHH
Q 010292 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWR--LCRSLYHSKMVMYASQRRVEEM 457 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~g~~~~A 457 (513)
+.|.+.|.+... ..|.++-+++-+.-.....+.+.+|..+|+..... +-+ --..+++.|..+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999988877 66777777888877777889999999999876521 111 1334578888999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010292 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
+..+++..... +-|..+|.++.-.|...|+++.|.+.|.+.. ++.|+.
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n 522 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDN 522 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCcc
Confidence 99999998875 6789999999999999999999999999755 455554
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.4e-07 Score=86.03 Aligned_cols=346 Identities=10% Similarity=0.017 Sum_probs=225.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMT--KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK 208 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 208 (513)
.+.+..|+.+++....+-- .+..+ ....+.+--.+.+.|+++.|+..|+...+..+.-...||.+|.+ ..-|+.++
T Consensus 250 kr~fskaikfyrmaldqvp-sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~-f~i~d~ek 327 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVP-SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICA-FAIGDAEK 327 (840)
T ss_pred hhhHHHHHHHHHHHHhhcc-ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhh-eecCcHHH
Confidence 5567778888876665421 12111 22334444456788888888888887766543233445544444 34577777
Q ss_pred HHHHHHHHHHhCCCCCCHHHH-----------------------------------------------------------
Q 010292 209 CQSLFRDLKKEANISPSIVTY----------------------------------------------------------- 229 (513)
Q Consensus 209 A~~~~~~m~~~~g~~p~~~~~----------------------------------------------------------- 229 (513)
..+.|.+|..-.| .||..-|
T Consensus 328 mkeaf~kli~ip~-~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 328 MKEAFQKLIDIPG-EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHhcCCC-CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 7777777764321 1111111
Q ss_pred ----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-----------------------
Q 010292 230 ----------------NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IA----------------------- 269 (513)
Q Consensus 230 ----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~----------------------- 269 (513)
-.-..-+.+.|+++.|+++++-+.+..-+.-...-|.| +-
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 12234577899999999999887654221111111100 00
Q ss_pred ------------HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010292 270 ------------GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337 (513)
Q Consensus 270 ------------~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (513)
.....|++++|.+.|++.....-......|++=+ .+-..|++++|+++|-.+... ...++.+...+
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qi 564 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQI 564 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 0123578999999999988754333333344333 356789999999999776553 23466666677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010292 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417 (513)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 417 (513)
.+.|-...+...|.+.+.....+.+.+. .+.+-|...|-+.|+-..|.+.+-+-.+ -.|.+..+...|..-|....
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp--~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDP--AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCH--HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhH
Confidence 7778776666655554433333333332 2233588899999999999887655443 44567777888888888888
Q ss_pred cHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYA-SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 418 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
-+++++.+|++.. -+.|+..-|..+|..|. +.|+++.|.++|+...++ ++-|..+...|++.+...|.
T Consensus 641 f~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999864 46799999988876654 799999999999999865 67889999999999887764
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.1e-08 Score=87.60 Aligned_cols=240 Identities=10% Similarity=-0.007 Sum_probs=159.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
+-+..+|.+.|-+.+|++.|+.-.+. .|-+.||..|-+.|.+...++.|+.++.+-.+. ++-|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45556666666666666666665543 345556666666666666666666666665554 333444444455555555
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292 345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424 (513)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 424 (513)
++.+++.+.++...+....++.... .+...|.-.++.|-|+..|++++.-|... ...|+.+.-+|.-.+++|-++.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHH
Confidence 6666666666655555555444432 35566677788888888888888876554 4568888878888888888888
Q ss_pred HHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 425 FVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 425 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
-|.+....--.|+ ...|..+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8877764433333 3445556666677888888988888887766 456778888888888889999998888877765
Q ss_pred CCCCCCCCCC
Q 010292 503 GYDVPVNAFP 512 (513)
Q Consensus 503 g~~p~~~t~~ 512 (513)
.-..-..+||
T Consensus 459 ~P~m~E~~~N 468 (478)
T KOG1129|consen 459 MPDMAEVTTN 468 (478)
T ss_pred Cccccccccc
Confidence 4444444443
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=1.7e-06 Score=82.83 Aligned_cols=201 Identities=12% Similarity=-0.009 Sum_probs=111.6
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
+++....-.+.-.+-++.++|........+. -.-+...|..+.-.+-...++++|++.|......+..|...|.-+
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4455555555555556666676666544332 333666777777777777888888888888777666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH------
Q 010292 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIA------ 269 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~------ 269 (513)
--.-++-|+++...+.-.++.+. .+-....|..+..++.-.|+...|..++++..+.. -.|+...|.....
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 66566666666666666666542 22334556666666666677777777766666543 1344444433322
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
...+.|..++|.+.+..-... ..|...| .+-...+.+.+++++|..++..+...
T Consensus 194 i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 223344545554444332221 1122222 12233344555555555555555554
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=5.6e-06 Score=76.48 Aligned_cols=344 Identities=9% Similarity=0.033 Sum_probs=203.8
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYN 230 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~ 230 (513)
..|+..+|.+.|+.=.+-+.++.|..+++...--. |++.+|---...=-++|+...|..+|+......|- .-+...++
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455555555555555555555555555544322 34444544444445555555555555554432111 00111222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHH--------HHHHHcCCCCCCHHHHH
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEI--------YQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~t~~ 300 (513)
+....=.++..++.|..+|+-.+++= +.+ ...|......=-+.|+....... |+.+.+.+ .-|-.+|-
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWf 326 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHH
Confidence 22222233444555555555444331 111 23333333333334444333322 23333322 23567777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcH--HHHHHHHHH-----H---HhcCChhHHHHHHHHHHhCCCCCcccch-
Q 010292 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEF--PLIRAMICA-----Y---SKCSVTDRIKKIEALMRLIPEKEYRPWL- 369 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-----~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 369 (513)
-.++.-...|+.+...++|++.+.. ++|-. ..|...|-. + ....+.+...++++...++.+....++.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 7888888889999999999998876 44421 122222221 1 2346677777777766666555443331
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292 370 -NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448 (513)
Q Consensus 370 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 448 (513)
.-+....-.++.++..|.+++...+. ..| ...+|...|..=.+.+++|.+..++++..+.+.. +..+|......-
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG--~cP-K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIG--KCP-KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhc--cCC-chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 11233444567889999999987765 334 3557888888888999999999999999987744 667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 449 ASQRRVEEMESVLKEMENYK-IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
...|+.+.|..+|+-..++. +.-....|.+.|+.-...|.++.|..+++++.+..
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 78999999999999888653 22234567777777789999999999999987653
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.5e-08 Score=86.32 Aligned_cols=227 Identities=12% Similarity=0.027 Sum_probs=125.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 010292 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY-NYLIAGYM 272 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~ 272 (513)
+.+.++|.+.|.+.+|...|+.-.++ .|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-.+|| .-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 44556666666666666666665543 455666666666666666666666666665543 2333333 23334555
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010292 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 352 (513)
..++.++|.++|+...+.. ..++.....+...|.-.++++.|+.++.++...|.. +...|+.+--+|.-.+++|.+..
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 5566666666666665532 224445555555566666666666666666666553 33444444444444555554433
Q ss_pred HHHHHH-hCCCCC--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292 353 IEALMR-LIPEKE--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 353 ~~~~~~-~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 429 (513)
.++... .+..++ ...| |+ +.......|++..|.+.|+-.+.. .+.....+|.|.-.-.+.|++++|..++...
T Consensus 380 sf~RAlstat~~~~aaDvW-YN-lg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVW-YN-LGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHhhccCcchhhhhh-hc-cceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 332221 122122 2233 22 444455566777777776655552 2334555666666666777777777777766
Q ss_pred Hh
Q 010292 430 ES 431 (513)
Q Consensus 430 ~~ 431 (513)
..
T Consensus 456 ~s 457 (478)
T KOG1129|consen 456 KS 457 (478)
T ss_pred hh
Confidence 54
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=4.4e-07 Score=88.66 Aligned_cols=297 Identities=12% Similarity=0.069 Sum_probs=207.4
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010292 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200 (513)
Q Consensus 121 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 200 (513)
..|...+-.=++..+.|++.++.-... +.............+.+.|+.++|..+|..+.++++.|..-|..+..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 455555556678899999888764432 3333455577788999999999999999999999887887788887777
Q ss_pred HHcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292 201 MYNG-----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 201 ~~~g-----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.-.. ..+...++|+++... -|.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 3333 578889999999865 25544443333333322223 3455667777788874 3566666666655
Q ss_pred cCHHHHHHHHHHHHcC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292 275 WMWGKVEEIYQMMKAG----P----------VMPDT--NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
...+-..+++...... | -.|.. .++..+...|-..|++++|+++++..++.. +..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5555556666655421 1 12343 455677888899999999999999999873 33477888889
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH----H--HHHHHH
Q 010292 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR----I--MRCIVS 411 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~----~--~~~li~ 411 (513)
..|-+.|++.+|.+.++..+.+...+- ++|+-.+..+.++|++++|.+++....+.+..+. +.. + ......
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 999999999988888887777665443 3355788899999999999999987766553221 111 1 244567
Q ss_pred HHHhcCcHHHHHHHHHHHH
Q 010292 412 SYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 412 ~~~~~~~~~~a~~~~~~m~ 430 (513)
+|.+.|++..|++.|..+.
T Consensus 314 a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 8888999988887766554
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2e-07 Score=77.94 Aligned_cols=200 Identities=11% Similarity=0.046 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010292 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV 376 (513)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 376 (513)
.+..-|.-+|...|++..|.+-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.++....+.+++-... |+ ....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL-NN-YG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL-NN-YGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh-hh-hhHH
Confidence 355667778888999999999999888873 34667788888889999999988888887777766654443 32 6778
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010292 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 456 (513)
+|..|++++|...|++.+....-+....+|..+..+..+.|+.+.|.+.|++..+.... .....-.+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 89999999999999999998776666778888888888999999999999998876543 33445667788889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 457 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
|..+++.....+. ++..+....|+.-...|+.+.+.++=..+.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999998874 8999999999999999999988887655544
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=3.1e-06 Score=81.00 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=124.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH--
Q 010292 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTK-EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY-- 202 (513)
Q Consensus 126 ~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-- 202 (513)
.+....+.++.+...+....+.... .++. .........+...|++++|.+++++..+..+.+...+.. ...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 14 LLLLLGGERPAAAAKAAAAAQALAA--RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHHHhcCCcchHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence 3333344555555555444433221 1222 222223344567899999999999988876556655553 222222
Q ss_pred --cCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292 203 --NGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 203 --~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
.+..+.+.+.+.... ...|+. .....+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 91 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 91 DFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred ccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHH
Confidence 445555555555421 233443 4445666788889999999999999988653 356677888888999999999
Q ss_pred HHHHHHHHHcCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 280 VEEIYQMMKAGPV-MPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 280 a~~~~~~m~~~g~-~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
|..++++.....- .|+ ...|..+...+...|++++|..+++.....
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999998776321 233 235667888889999999999999987643
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=4.3e-07 Score=83.84 Aligned_cols=155 Identities=9% Similarity=-0.072 Sum_probs=105.6
Q ss_pred HhcccCCHHHHHHHHHHHHhccC--C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 165 FAGRINNVDLAADLFAEAANKHL--K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
.....+..+.++.-+.++..... + ....|..+...|...|+.++|...|++..+. -+.+...|+.+...+...|
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 34455677778888877776433 1 2456777777888888888888888888753 2345678888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
++++|...|++..+.... +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...++
T Consensus 113 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888888765432 4566777777777888888888888887763 3443222222233345567788888776
Q ss_pred HHHh
Q 010292 321 LVKH 324 (513)
Q Consensus 321 ~~~~ 324 (513)
....
T Consensus 190 ~~~~ 193 (296)
T PRK11189 190 QRYE 193 (296)
T ss_pred HHHh
Confidence 5443
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.04 E-value=3.6e-07 Score=88.27 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=80.0
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHh----CC-CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKE----AN-ISPSIVTY-NTLISVFGRLLLVDHMEAAFQEIKDS-----NL- 257 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~g-~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 257 (513)
..+...+...|...|++++|..+++...+. .| ..|.+.+. +.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555777777777777777777765542 12 13343332 33666777777888887777777631 21
Q ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 258 SP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVM-PD-TNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 258 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.| -..+++.|-..|.+.|++++|...++...+ .|.. |. ..-++.+...|+..+++++|..++....
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 11 234566666677778887777766655432 1221 22 2344556666777777888877776543
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=5.8e-06 Score=80.92 Aligned_cols=355 Identities=11% Similarity=0.067 Sum_probs=230.5
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYN 230 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~ 230 (513)
++-|...|..+.-++...|+++.+.+.|++....-+...+.|+.+-..|...|.-..|..+.++-... .-+|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchHHH
Confidence 56699999999999999999999999999987655557889999999999999999999998876643 11243 33332
Q ss_pred HHHHHHHhc-CCh--------------------------------------------------hHHHHHHHHHHHCCCCC
Q 010292 231 TLISVFGRL-LLV--------------------------------------------------DHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 231 ~li~~~~~~-g~~--------------------------------------------------~~A~~~~~~m~~~g~~p 259 (513)
..-..|.+. +.+ .++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 222222211 222 3344455555443321
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cC-----------
Q 010292 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VD----------- 327 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~----------- 327 (513)
|..+.-.+---|+..++++.|.+..++..+-+-.-+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 222222233345566778888888888887654557788888888888888888888888775542 21
Q ss_pred -------CCcHHHHHHHHHHHHh---------cCC--------------hhHHHH----HHHHH----HhC------CCC
Q 010292 328 -------GKEFPLIRAMICAYSK---------CSV--------------TDRIKK----IEALM----RLI------PEK 363 (513)
Q Consensus 328 -------~~~~~~~~~li~~~~~---------~g~--------------~~~a~~----~~~~~----~~~------~~~ 363 (513)
.--..|+..++..+-. .|. ..++.+ +.... +.+ +..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0011122222222220 000 000000 00000 000 100
Q ss_pred Cc-----ccc-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292 364 EY-----RPW-----LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 364 ~~-----~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 433 (513)
.. .+| .+......+.+.++.++|...+.+... ..+.....|......+...|+.++|.+.|......+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 01 111 122355667777888888877766655 445556667766677888899999999999877544
Q ss_pred CcccHhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010292 434 WRLCRSLYHSKMVMYASQRRVEEMES--VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
.. ++....++...+.+.|+..-|.. ++.++.+.| +.+...|-.+...+.+.|+.+.|.+.|....+..-.-++..|
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 22 35566788889999998888888 999999988 678899999999999999999999999988776555555444
Q ss_pred C
Q 010292 512 P 512 (513)
Q Consensus 512 ~ 512 (513)
.
T Consensus 793 s 793 (799)
T KOG4162|consen 793 S 793 (799)
T ss_pred c
Confidence 3
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=9.2e-06 Score=78.01 Aligned_cols=367 Identities=10% Similarity=0.003 Sum_probs=235.0
Q ss_pred hHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH
Q 010292 121 YAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199 (513)
Q Consensus 121 ~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 199 (513)
..|-.+++.+ .++....+.+.+.+.+. .+-...+.....-.+...|+.++|.+....-.+..+.+.+.|+.+.-.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK----FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh----CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 3455666666 45666677777766652 333455666665667788999999999999888777889999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
+-...++++|+..|....+- -+-|...|.-+--.-++.++++.......++.+... -....|..+..++.-.|+...
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999863 244567787777777888999998888888877532 245678888888888999999
Q ss_pred HHHHHHHHHcCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010292 280 VEEIYQMMKAGP-VMPDTNTYLLLL------RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352 (513)
Q Consensus 280 a~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 352 (513)
|..+.++..+.. -.|+...|.... ....+.|.+++|.+.+..-... +......--.-.+.+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999988754 246666665443 3345678888888877655443 22233333455667888898998888
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHHHhc-CCHHHHHHHHH----------------------------------HHHhcC
Q 010292 353 IEALMRLIPEKEYRPWLNVLLIRVYAKE-DCLEEMEKSIN----------------------------------DAFEHK 397 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~----------------------------------~~~~~~ 397 (513)
++..+....+.+..-+. .+..++.+. +..+....+|. .++++|
T Consensus 241 ~y~~Ll~rnPdn~~Yy~--~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYE--GLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhhCchhHHHHH--HHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 88888776666554432 233344311 11111112222 222322
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcC----------CcccHhh--HHHHHHHHHhcCCHHHHHHHH
Q 010292 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE----SAG----------WRLCRSL--YHSKMVMYASQRRVEEMESVL 461 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 461 (513)
..+ ++..+...|-.-...+-..++...+. ..| -.|+... +-.++..|-+.|+++.|..++
T Consensus 319 ~p~----vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 319 VPS----VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCc----hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 211 23333333333222221111111111 111 0334333 345567777888888888888
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 462 KEMENYKIDCS-KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 462 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
+...+. .|+ ...|..-.+.+...|+.++|..++++.++..
T Consensus 395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 887754 343 3344455577888888888888888776553
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1e-06 Score=82.96 Aligned_cols=279 Identities=11% Similarity=0.004 Sum_probs=161.5
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
-+......-..-+-..+++.+..++++...+..+.+...+-.=|..+...|+..+-..+=.+|... .+-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 355555555566666777777777777777766555556666666777777777766666677654 344456777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCC-CCCHHHHHHHHHHHHhc
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPV-MPDTNTYLLLLRGYAHS 309 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~-~p~~~t~~~ll~~~~~~ 309 (513)
-.|--.|...+|.+.|.+.... .|. ...|-.+.+.|+-.|..|+|+..|...-+ .|. .| +--+.--|.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t 393 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRT 393 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHh
Confidence 7776677777777777765542 222 34566667777777777777776665443 121 12 12223335566
Q ss_pred CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCcccch--HHHHHHHHHhcCCH
Q 010292 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEKEYRPWL--NVLLIRVYAKEDCL 383 (513)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~--~~~li~~~~~~~~~ 383 (513)
++++.|.+.|.+.... .+.|..+.+-+--.....+.+.+|...++... ...... ..|. ..-|..+|.+.+.+
T Consensus 394 ~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhhH
Confidence 7777777777766654 23455555555555555555555544433222 111111 1221 22366666666667
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 446 (513)
++|+..+++.+. ..+.+..++.++.-.|...|+++.|.+.|.+.. .+.|+..+-..++.
T Consensus 472 ~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 472 EEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 777766666665 334455566666666666677777766666654 34455444444443
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=9.9e-06 Score=77.56 Aligned_cols=164 Identities=12% Similarity=-0.035 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
...|..+...+...|+.+.+.+.+....+....+ ..........+...|++++|.+++++.... .+.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 3445555555556666666666666555443322 122222334455667777777777776653 2233333332
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010292 233 ISVFGR----LLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307 (513)
Q Consensus 233 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 307 (513)
...+.. .+..+.+.+.++. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 212222 3344444444433 1112222 2333444556666777777777777776643 223455666666677
Q ss_pred hcCChHHHHHHHHHHHhc
Q 010292 308 HSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~ 325 (513)
..|++++|...++...+.
T Consensus 160 ~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 160 MQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HcCCHHHHHHHHHhhhhc
Confidence 777777777777666553
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-05 Score=72.92 Aligned_cols=303 Identities=10% Similarity=0.028 Sum_probs=207.6
Q ss_pred CCCCHHHHHHHHHHhccc--CCHHHHHHHHHHHHhc-cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292 152 TPMTKEEYTKGIKFAGRI--NNVDLAADLFAEAANK-HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
+++.......-+.+++.. ++-..|...+-.+... -++ |+.....+...+...|+.++|...|++... +.|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i 266 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNV 266 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhh
Confidence 444444444555555443 3333444444333332 235 899999999999999999999999999874 345443
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292 228 -TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 228 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
........+.+.|++++...+...+.... +-+...|-.-.......+++..|+.+-++-.+.. .-+...|..--..+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 23333344567888888888888777531 1234445555556667788999999998887743 12455666666778
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCcccchHHHHHH--H-HHhcCC
Q 010292 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE-ALMRLIPEKEYRPWLNVLLIR--V-YAKEDC 382 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~li~--~-~~~~~~ 382 (513)
...|++++|.-.|...... -+.+...|..|+.+|...|.+.+|.-.- ..++.++. +..+. .++. . +-...-
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~L---tL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSL---TLFGTLVLFPDPRM 419 (564)
T ss_pred HhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhh---hhhcceeeccCchh
Confidence 8899999999999887775 2358889999999999999888765443 33333332 22222 1221 1 112234
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
-|+|.+++++.+.. .|.-....+.+...|...|..+.+..++++... ..||....+.|.+.+...+.+++|++.|.
T Consensus 420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 57888888887774 344455577788889999999999999998764 35788888999999999999999999999
Q ss_pred HHHhCC
Q 010292 463 EMENYK 468 (513)
Q Consensus 463 ~m~~~~ 468 (513)
...+.+
T Consensus 496 ~ALr~d 501 (564)
T KOG1174|consen 496 KALRQD 501 (564)
T ss_pred HHHhcC
Confidence 888765
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=8.8e-06 Score=72.43 Aligned_cols=152 Identities=12% Similarity=0.037 Sum_probs=88.8
Q ss_pred HHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292 122 AFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 122 ~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
.....|..| -++.++|+..+..+.+.. .++...+..|.-.+.-.|.+.+|..+-....+ ++-.-..|+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfh 129 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFH 129 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHH
Confidence 334444444 357777777777665532 33555555565555566777777766655433 3334444455
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHccCH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA-GYMTAWMW 277 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~ 277 (513)
.-.+.++-++-..+-+.+... ..---+|....-....+++|+.++......+ |+-...|.-+. +|.+..-+
T Consensus 130 lahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchh
Confidence 555666666655555555421 1222334444444456889999999888653 55666665553 55667777
Q ss_pred HHHHHHHHHHHc
Q 010292 278 GKVEEIYQMMKA 289 (513)
Q Consensus 278 ~~a~~~~~~m~~ 289 (513)
+-+.++++--.+
T Consensus 202 dvsqevl~vYL~ 213 (557)
T KOG3785|consen 202 DVSQEVLKVYLR 213 (557)
T ss_pred hhHHHHHHHHHH
Confidence 777777776655
No 77
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.6e-07 Score=85.36 Aligned_cols=221 Identities=12% Similarity=0.085 Sum_probs=159.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
.+.-.|+.-.|.+-|+..... .|... .|.-+...|....+-++....|++....+.. |..+|..-...+.-.+++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHH
Confidence 345578889999999998863 33333 3888888899999999999999998876543 667777777777778889
Q ss_pred HHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292 278 GKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356 (513)
Q Consensus 278 ~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 356 (513)
++|..=|++.+. +.| +...|.-+.-+..+.+++++++..|++.++. ++....+|+-....+...++++.|.+-++.
T Consensus 411 e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 411 EEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999887 344 4677878888888899999999999999886 666788899999999999999999888888
Q ss_pred HHhCCCC------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292 357 MRLIPEK------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 357 ~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 429 (513)
..++.+. +..+.+.-.++.. .-.+++..|.+++.+.++ ..|.....|..|...-.+.|+.++|+++|++.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8877766 3333322111111 122566666666666665 33333444666666666666666666666654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=1.2e-06 Score=80.98 Aligned_cols=182 Identities=12% Similarity=-0.050 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
..+.++.-+..+.........-....|..+...|.+.|+.++|...|++..+..+.+...|+.+...+...|++++|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555544322111112456777788889999999999999999998777899999999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292 213 FRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 213 ~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
|++..+. .| +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|++.....
T Consensus 121 ~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999863 45 46788888889999999999999999998754 443322222333445678999999997755422
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.|+...+ .......|+.+.+ +.++.+.+
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~ 223 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKA 223 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHh
Confidence 3332222 2223345666554 35555543
No 79
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=1.9e-09 Score=62.39 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (513)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=2.2e-06 Score=71.84 Aligned_cols=192 Identities=10% Similarity=-0.093 Sum_probs=153.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
+...|.-.|.+.|+...|.+-+++..+..+.+..+|..+...|-+.|+.+.|.+-|++..+. -+-+-.+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 44556777889999999999999999988778889999999999999999999999998864 2334567888888889
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
..|.+++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++-.+..-. ...+...+.+...+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988752111 2467888888888999999999999998875321 3567788888899999999999
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 010292 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 353 (513)
..++.....+. ++..+.-..|..--..|+.+.+.+-
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99998888766 7777766677777777766655444
No 81
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=2.6e-09 Score=61.82 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
+|+.||..|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 0567888888888888888888888888888874
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.5e-06 Score=74.74 Aligned_cols=292 Identities=8% Similarity=-0.039 Sum_probs=199.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHccCH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF-TYNYLIAGYMTAWMW 277 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~ 277 (513)
+.+..++...|...+-.+....-++-|+.....+.+.+...|+.++|+..|++..-.+ |+.. ......-.+.+.|++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCH
Confidence 3344566666666555554433466678888999999999999999999999987632 3321 222222334578888
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
++...+...+.... .-....|-.-...+...+++..|+.+-++.++.. +.+...+-.--..+...|+.+.|.-+++..
T Consensus 283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 98888888776531 1233344444455566788999999988887753 234444544455677778888777777766
Q ss_pred HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHhcCCc
Q 010292 358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV-SSYF-RCNAVDKLANFVKRAESAGWR 435 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~ 435 (513)
..+.+.....+ .-++.+|...|+..+|.-+-+...+. .+.+..++..+. ..|. ....-++|.++++..... .
T Consensus 361 q~Lap~rL~~Y--~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~ 434 (564)
T KOG1174|consen 361 QMLAPYRLEIY--RGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--N 434 (564)
T ss_pred HhcchhhHHHH--HHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--C
Confidence 66655555443 46999999999999998777665552 223344443331 2222 234567899998876643 3
Q ss_pred cc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 436 LC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 436 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
|+ ....+.+...+...|..++++.+++.... ..||....+.|.+.+.....+++|++.|....+.
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 43 34456677788899999999999999875 3689999999999999999999999988876544
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=2.2e-07 Score=84.54 Aligned_cols=250 Identities=8% Similarity=0.028 Sum_probs=110.1
Q ss_pred cccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010292 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 245 (513)
.-.|++..++.-.+ ....... .......+.+++...|+.+.+ ..++.. +-.|.......+...+...++-+.+
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~--~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKK--SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-T--TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhcc--CCChhHHHHHHHHHHHhCccchHHH
Confidence 34466666654444 2221111 334445555666666665533 233332 1245555444444444332333334
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 246 EAAFQEIKDSNLSPNVFTYNYL-IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
..-+++....+...+..++..+ ...+...|++++|++++..- -+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333333322222122222222 13344456666666555431 2444555555666666666666666666655
Q ss_pred ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010292 325 HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404 (513)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (513)
.+ .|.. ..-+..+ .+..+...+.+.+|..+|+++..+ .+++..
T Consensus 160 ~~--eD~~-l~qLa~a--------------------------------wv~l~~g~e~~~~A~y~f~El~~~--~~~t~~ 202 (290)
T PF04733_consen 160 ID--EDSI-LTQLAEA--------------------------------WVNLATGGEKYQDAFYIFEELSDK--FGSTPK 202 (290)
T ss_dssp CS--CCHH-HHHHHHH--------------------------------HHHHHHTTTCCCHHHHHHHHHHCC--S--SHH
T ss_pred cC--CcHH-HHHHHHH--------------------------------HHHHHhCchhHHHHHHHHHHHHhc--cCCCHH
Confidence 32 2222 1112221 222222234566666666665543 123445
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010292 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLKEMEN 466 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 466 (513)
+++.+..++...|++++|.+++.+....... +..+...+|......|+. +.+.+++.++..
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5666666666666666666666665443322 344444445444455554 455556666554
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=5.5e-07 Score=81.92 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
+.+..|.+.++++.|.+.++.|.+......-..+..+.+......+.+.+|..+|+++.+. ..++..+.+.+..++...
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence 5788899999999999999998875332222222233333333344789999999998654 567888899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHC
Q 010292 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMCKN 502 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 502 (513)
|++++|.+++++..+.+ +-+..+...++-+....|+. +.+.+++.++...
T Consensus 215 ~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp T-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999988776 45777888888888888888 6677788877643
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=7.5e-05 Score=81.12 Aligned_cols=338 Identities=9% Similarity=-0.052 Sum_probs=207.6
Q ss_pred hcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----CCCH--HHHHHHHHHHH
Q 010292 166 AGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-----SPSI--VTYNTLISVFG 237 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-----~p~~--~~~~~li~~~~ 237 (513)
+...|+++.+..+++.+..... .+..........+...|++++|...+........- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445667766666666533211 12333344455566789999999999887643111 1111 12223334566
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHHHHHHHHh
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLLLLRGYAH 308 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~ 308 (513)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |- .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 889999999999988763111222 34566666778899999999999887642 21 1123455666778889
Q ss_pred cCChHHHHHHHHHHHh----ccCC--C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C--cccchHHHHHHHHH
Q 010292 309 SGNLPRMEKIYELVKH----HVDG--K-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-E--YRPWLNVLLIRVYA 378 (513)
Q Consensus 309 ~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~~li~~~~ 378 (513)
.|++++|...+++..+ .+.. + ....+..+...+...|+++.|.........+... + ........+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2221 1 2233445556677789999887665544333221 1 11111223556777
Q ss_pred hcCCHHHHHHHHHHHHhcCC---CCchH-HHH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCccc---HhhHHHHHHHHHh
Q 010292 379 KEDCLEEMEKSINDAFEHKT---SVTTV-RIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLC---RSLYHSKMVMYAS 450 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~---~~~~~-~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 450 (513)
..|+.++|.+.+.+...... ..... ... ...+..+...|+.+.|.+++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999999999888754211 11100 001 1122444567899999998876543221111 1113456677888
Q ss_pred cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 451 QRRVEEMESVLKEMENY----KIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
.|++++|..++++.... |... ...++..+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999887653 3222 23456677788999999999999999887654
No 86
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00025 Score=67.09 Aligned_cols=376 Identities=9% Similarity=0.060 Sum_probs=225.4
Q ss_pred cCchhHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010292 117 HSNGYAFVELMKQLGSR-PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~-~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (513)
.-|..+|..+++....+ .+++.+.++.+... .+-+...|..-|+.-.+.++++...++|.+....-. +...|..
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHH
Confidence 44778999999999654 56788889887653 566888999999999999999999999998776422 6778887
Q ss_pred HHHHHHH-cCChH----HHHHHHHHHHHhCCCCCCH-HHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCC-
Q 010292 196 LLGAYMY-NGLSD----KCQSLFRDLKKEANISPSI-VTYNTLISVF---------GRLLLVDHMEAAFQEIKDSNLSP- 259 (513)
Q Consensus 196 li~~~~~-~g~~~----~A~~~~~~m~~~~g~~p~~-~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~g~~p- 259 (513)
-|.---+ .|+.. .....|+-...+.|+.+-. ..|+..+..+ ....+++...++++++...-+.-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7764433 23332 3334455555444544433 2344444432 33345666777888877542211
Q ss_pred -----CHHHHHHHHHHHH-------HccCHHHHHHHHHHHHc--CCCCCCHHH---------------HHHHH-------
Q 010292 260 -----NVFTYNYLIAGYM-------TAWMWGKVEEIYQMMKA--GPVMPDTNT---------------YLLLL------- 303 (513)
Q Consensus 260 -----~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~p~~~t---------------~~~ll------- 303 (513)
|-..|..=|+-.. +...+..|.+++++... +|+..+..+ |-.+|
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1122221121111 12234455555555432 232111100 11111
Q ss_pred ------------------------------------------HHHHhcCC-------hHHHHHHHHHHHhccCCCcHHHH
Q 010292 304 ------------------------------------------RGYAHSGN-------LPRMEKIYELVKHHVDGKEFPLI 334 (513)
Q Consensus 304 ------------------------------------------~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~ 334 (513)
+.+...|+ .+++.++++..++.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222 23344444443332222223333
Q ss_pred HHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010292 335 RAMICAYSKCS---VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411 (513)
Q Consensus 335 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 411 (513)
..+.+---..- ..+......+.+......+..-. +-.+++.-.+..-++.|..+|.+..+.+..+..+.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV-YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 32222111111 12222223333333333332222 335777777888899999999999998877777888889988
Q ss_pred HHHhcCcHHHHHHHHHH-HHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 010292 412 SYFRCNAVDKLANFVKR-AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQ 488 (513)
Q Consensus 412 ~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~ 488 (513)
-|| .++.+-|..+|+- ++..|- +.......++.+...++-..|..+|+.....++.|+ ...|..++.--..-|+
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 665 5788999999995 444443 344456778888899999999999999998866654 4789999999999999
Q ss_pred HhHHHHHHHHHHH
Q 010292 489 RRKVNQVLGLMCK 501 (513)
Q Consensus 489 ~~~A~~~~~~m~~ 501 (513)
...+.++-+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=9.4e-06 Score=77.01 Aligned_cols=219 Identities=13% Similarity=0.087 Sum_probs=163.1
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhH
Q 010292 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDH 244 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~ 244 (513)
+.+.|++.+|.-.|+...+.++.+...|-.|.......++-..|+..+.+..+ +.| |....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhHHH
Confidence 46788899999999998888777899999999999999999999999988885 345 45677778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCh
Q 010292 245 MEAAFQEIKDSNLSPNVFTYNYLI-----------AGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
|...|+.=+...++ |-.+. ..+.....+....++|-++.. .+..+|...+..|--.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 98888876543211 11111 111122234455666666543 45446666777777778888999
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 392 (513)
+.|...|+..... .+.|..+||.|--.+....+.++|..++....++.+.-+..+ |+ |.-+|...|.+++|.+.|-+
T Consensus 447 draiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-yN-lgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-YN-LGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-hh-hhhhhhhhhhHHHHHHHHHH
Confidence 9999999988875 345788899999899888888888888888888887777777 43 77788888999999888866
Q ss_pred HHh
Q 010292 393 AFE 395 (513)
Q Consensus 393 ~~~ 395 (513)
.+.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 543
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.64 E-value=0.00054 Score=66.22 Aligned_cols=339 Identities=12% Similarity=0.072 Sum_probs=223.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
..|-..+..+.+.|++......|+.....-+. ...+|...+...-..|-++-++.+++.-.+- +...-+.-|.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHH
Confidence 47777888888999999999999987765332 5678999999999999999999999998852 4445778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHccCHH---HHHHHHHHHHcCCCCCC--HHHHHHHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSN------LSPNVFTYNYLIAGYMTAWMWG---KVEEIYQMMKAGPVMPD--TNTYLLLL 303 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~--~~t~~~ll 303 (513)
.+++.+++++|-+.+....... -+-+...|..+-+..++.-+.- .+..+++.+.. .-+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHH
Confidence 9999999999999988876421 2345667777777666654333 34445555443 2355 56789999
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC----------------hh---HHHHHHHHHHhCCCCC
Q 010292 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV----------------TD---RIKKIEALMRLIPEKE 364 (513)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------~~---~a~~~~~~~~~~~~~~ 364 (513)
+-|.+.|.++.|..+|++....- .++.-|+.+.++|..-.. -+ +.+-.+..++.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999877652 244445555555553211 00 0000011111111100
Q ss_pred cccchHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 010292 365 YRPWLNVLL------------IRVYAKEDCLEEMEKSINDAFEHKTS----VTTVRIMRCIVSSYFRCNAVDKLANFVKR 428 (513)
Q Consensus 365 ~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 428 (513)
... .|..+ -..-+..|+..+-...|.+.++.-.. -.....|..+...|...|+++.|..+|++
T Consensus 334 ~~~-lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 334 PLL-LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred chH-HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 000 01101 11122335666677777777663111 11244688899999999999999999999
Q ss_pred HHhcCCccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CC-------CCHHHHHHHHHHHHhcCC
Q 010292 429 AESAGWRLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYK----------ID-------CSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 429 m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~-------p~~~~~~~li~~~~~~g~ 488 (513)
..+...+-- ..+|..-...-.++.+++.|.++.+.....- -. -+...|..+++.-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 876554422 3344444555567888999999887665321 11 244567777777788889
Q ss_pred HhHHHHHHHHHHHCCCC
Q 010292 489 RRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 489 ~~~A~~~~~~m~~~g~~ 505 (513)
++....+++++.+..+-
T Consensus 493 festk~vYdriidLria 509 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999887664
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00069 Score=64.90 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH--------HHHHCCCCCC
Q 010292 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG--------LMCKNGYDVP 507 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~ 507 (513)
....|.+++...-+..-.-.....-.++.....+|+++.|.+++. .+.+.+..|-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 567788888777655422224455567788899999999999999 6666665554
No 90
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.60 E-value=0.00077 Score=65.25 Aligned_cols=301 Identities=9% Similarity=0.098 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------ChhHHHHH
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----------------------LVDHMEAA 248 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A~~~ 248 (513)
..|++|..-|.+.|++++|..+|++..+. ..++.-|+.+.++|+.-. +++-...-
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 35666666666777777777776666543 344445555555554321 12222333
Q ss_pred HHHHHHCCC-----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcCC
Q 010292 249 FQEIKDSNL-----------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP------DTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 249 ~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------~~~t~~~ll~~~~~~g~ 311 (513)
|+.+.+.+. .-++..|..-.. +..|+..+....|.+..+. +.| -...|..+.+.|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333333211 011222222221 2245566666666666542 222 23567788888889999
Q ss_pred hHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-------ccc---------hHHH
Q 010292 312 LPRMEKIYELVKHHVDGKE---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-------RPW---------LNVL 372 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~---------~~~~ 372 (513)
++.|..+|+...+-..+-- ..+|..-..+-.+..+++.|.++++....++.+.. .|- +.+.
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999998877533221 33454444555555555554444433333333211 010 0112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHh-
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-RSLYHSKMVMYAS- 450 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~- 450 (513)
.++.--..|-++....+++.++......|.. .......+..+.-++++.+++++-...-.-|+ ...|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 3333344467777778888888765544322 22222334456677888888886544333344 3557766665553
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHhHHHHHHHHHH
Q 010292 451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYY--AYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~ 500 (513)
.-.++.|..+|++..+ |++|...-+-.|+. .-.+.|....|++++++..
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4468899999999987 76654432222222 2235677788888888743
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00011 Score=64.18 Aligned_cols=193 Identities=11% Similarity=0.025 Sum_probs=111.8
Q ss_pred HHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH-HHHH
Q 010292 123 FVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA-LLGA 199 (513)
Q Consensus 123 ~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-li~~ 199 (513)
+.+++..+- ++...|.+++....++ .+.+......|..+|-...++..|-+.++++-...+. ..-|.. -.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHH
Confidence 344444442 2445555555544332 2235566666666777777777777777776654332 111211 1344
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
+-+.+.+.+|+++...|.. .|+...-..-+.+. -..+|+..+..++++.... -+..+.+.......+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence 5566777777777766642 13332222222222 2356677777777766532 2344444444455678888
Q ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292 278 GKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 278 ~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
++|.+-|+...+ .|.+| ...|+..+-. .+.|+.+.|++...+++++|+..
T Consensus 161 EaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhc
Confidence 999888888776 45554 4567666544 46678888888888888887754
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00091 Score=64.12 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=33.7
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.+..++|+..++-.... +..+...-.+.+.+.|++++|+.+|+.+.+
T Consensus 90 Yrlnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HHcccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4677888888777722221 444555556777788888888888888865
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=2.8e-05 Score=69.51 Aligned_cols=187 Identities=14% Similarity=0.031 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTY 229 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~ 229 (513)
.....+-.+...+.+.|++++|...|+++....+.+ ..++..+..++...|++++|+..|+++.+...-.|.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 356677777888889999999999999988765543 3567888888999999999999999998652111221 234
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010292 230 NTLISVFGRL--------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301 (513)
Q Consensus 230 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 301 (513)
..+..++.+. |+.+.|.+.|+++...... +...+..+.... . .... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~-~---~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD-Y---LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH-H---HHHH------HH--------HHHHH
Confidence 4455555543 6788888888888865322 222222111100 0 0000 00 01123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292 302 LLRGYAHSGNLPRMEKIYELVKHHVD--GKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
+...+.+.|++++|...++...+... +.....+..+..++.+.|+++++...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44456666777777776666665421 12344566666667777766666665554443
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.55 E-value=0.00054 Score=61.15 Aligned_cols=196 Identities=9% Similarity=-0.057 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-TLI 233 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-~li 233 (513)
++.-.--+-+.+...|++..|+.-|....+.++.+-.++-.-...|...|+...|+.=+....+ ++||-..-. --.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhc
Confidence 3333344566677889999999999988886444444444445678888999999998888885 478854322 233
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHH------------HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSNLSPN--VFTY------------NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 299 (513)
..+.+.|.+++|..=|+.+++....-+ ...+ ...+..+...|+...|+.....+.+-. ..|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 456788999999999999987643211 0111 112223334455555555555555521 1244444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
..=..+|...|++..|+.=++...+... .+......+-..+...|+.+.....++
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555555555555555544444443321 223333334444555554444433333
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=6.7e-05 Score=77.38 Aligned_cols=222 Identities=15% Similarity=0.100 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------
Q 010292 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------ 226 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------ 226 (513)
+.+...+..|+..+...+++++|.++.+...+..+.....|-.+...+...++.+++..+ .+... ...+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHH
Confidence 346677788888888999999999999877666554555555555577777776666555 33321 11111
Q ss_pred -------------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010292 227 -------------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 227 -------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 293 (513)
..+..+..+|-+.|+.++|..+++++.+... -|..+.|.+...|+.. ++++|.+++.+....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 3444455555555555555555555555442 2455555555555555 555555555554432
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 010292 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373 (513)
Q Consensus 294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (513)
+...+++..+.++|..+..... .+...+-. +.+.+......+-...+.-.+
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~----------------i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLR----------------IERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHH----------------HHHHHHhhhccchhHHHHHHH
Confidence 3334445555555555544311 12221111 111111111111111112246
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010292 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (513)
-..|-...+++++..+++.+++.. +.+.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 677778888888888888888743 334444555666555
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3.8e-05 Score=73.06 Aligned_cols=253 Identities=10% Similarity=0.013 Sum_probs=175.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHH
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 314 (513)
+.+.|++..|.-.|+..++..+. +...|-.|.......++-..|+..+++-.+ +.|+ ....-.|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence 46788899999999988876543 778899888888888888889999988887 4454 6777788888888888888
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHH----HhcCChhHHHHHHHHHHhC---CCCCcccchHHHHHHHHHhcCCHHHHH
Q 010292 315 MEKIYELVKHHVDGKEFPLIRAMICAY----SKCSVTDRIKKIEALMRLI---PEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
|...++.-+....+ -...-..-...- ...-+.+....+.+.|.++ ......+.+...|.-.|--.|.+++|.
T Consensus 372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99888876543211 000000000000 0000111112222223222 222345555556788888899999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 010292 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME-- 465 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 465 (513)
+.|+..+. ..|.+..+||.|...++...+.++|+.-|.+..+....--..-|| |.-.|...|.+++|.+.|-+..
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999988 668899999999999999999999999999998765443344466 5558899999999999886544
Q ss_pred -hCC------CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010292 466 -NYK------IDCSKKTFWIMYYAYATCGQRRKVNQV 495 (513)
Q Consensus 466 -~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (513)
+++ ..++...|..|=.++.-.++.|.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 331 123456788888888888887755544
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.00054 Score=74.49 Aligned_cols=303 Identities=9% Similarity=-0.012 Sum_probs=181.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL------SPNV--FTYNYLIAG 270 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~--~~~~~li~~ 270 (513)
.....|+++.+.+.++.+... ....+..........+...|++++|..++++..+.-- .+.. .....+-..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344567777777776665321 1111222223444555678999999999988754210 1111 122223345
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccC---CC--cHHHHHHHHHHH
Q 010292 271 YMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD---GK--EFPLIRAMICAY 341 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~ 341 (513)
+...|++++|...+++....--..+ ....+.+...+...|++++|...+++...... .+ ....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5679999999999998765311112 23445666677889999999999988764211 11 123445566678
Q ss_pred HhcCChhHHHHHHHHHHhCCC----CCcc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Q 010292 342 SKCSVTDRIKKIEALMRLIPE----KEYR--PWLNVLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTTVRIMRCIVSS 412 (513)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~----~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~ 412 (513)
...|+++.|....+....... .... ......+...+...|++++|...+.+..... ........+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999988776543333211 1111 1112234556677799999999988765521 111123345556677
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcc-cHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 010292 413 YFRCNAVDKLANFVKRAESAGWRL-CRSLY-----HSKMVMYASQRRVEEMESVLKEMENYKIDCS---KKTFWIMYYAY 483 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 483 (513)
+...|+.+.|.+.+.......... ....+ ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999988875421110 00111 1122445568999999999877654321111 11245677888
Q ss_pred HhcCCHhHHHHHHHHHHHC
Q 010292 484 ATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 484 ~~~g~~~~A~~~~~~m~~~ 502 (513)
...|++++|...+++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 702 ILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=0.00011 Score=76.83 Aligned_cols=227 Identities=12% Similarity=0.127 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHH
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (513)
...|-..|....+.++.++|.+++++.+.. +++- -...|.++++.-..-|.-+...++|++..+.. ....+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 345666666666666666666666665542 1110 12345555555555565666666666666541 12334566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010292 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416 (513)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (513)
|...|.+.+..++|.++++.|-+-.......|+ ..+..+.+.++-+.|..++.+.++.-............+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~--~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWI--MYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHH--HHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 666666666666666665555444334444453 566666677777777777777666332222444555566666778
Q ss_pred CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHhHH
Q 010292 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK--KTFWIMYYAYATCGQRRKV 492 (513)
Q Consensus 417 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A 492 (513)
|+.+.+..+|+.....-.+ -...|+.+|+.-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+.+
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8888888888877654432 4567888888888888888888888888888776543 3455555555555664443
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=0.00014 Score=71.96 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=90.0
Q ss_pred CHHHHHHHHH--HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CC
Q 010292 155 TKEEYTKGIK--FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI--------SP 224 (513)
Q Consensus 155 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~--------~p 224 (513)
|..|-..+++ .|...|+.|.|.+-.+.++ +..+|..|.+.|.+.++.|-|.-.+..|..-.|. .|
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 5566666654 4677888888887777665 4568888888888888888777776666432111 12
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
+ .+=.-+.-.....|.+++|..+|.+-+. |..|=..|-..|.+++|.++-+.=..-. =..||..-..
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 2 2222222233466777888888777664 3444455666777777777655432211 2335555555
Q ss_pred HHHhcCChHHHHHHHHH
Q 010292 305 GYAHSGNLPRMEKIYEL 321 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~ 321 (513)
-+-..++.+.|++.|++
T Consensus 867 ~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHhhccHHHHHHHHHh
Confidence 55556666666666654
No 100
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.00027 Score=65.42 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh--HHH
Q 010292 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN-NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS--DKC 209 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A 209 (513)
..+.|+...+.+.+. .|-+..+|+..-.++.+.| +++++++.++++.+.++++..+|+.-...+.+.|+. +++
T Consensus 52 ~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 52 RSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 344455555544442 1223333333333333334 345555555555554444444454444333333331 344
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
+++++++.+. -+-|..+|+...-++.+.|+++++++.++++++.++ -|..+|+.....+
T Consensus 128 l~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl 186 (320)
T PLN02789 128 LEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHH
Confidence 4455444432 123344454444444444555555555555554433 2444444444333
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.0007 Score=68.78 Aligned_cols=244 Identities=13% Similarity=0.147 Sum_probs=129.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
+..++-+++|+.+|++.. .+....+.||.- .+.++.|.++-++.. ...+|..+..+-.+.|.+.+
T Consensus 1058 ai~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHH
Confidence 344445566666665442 234444444433 244555555544432 34567777777777777777
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
|++-|-+. -|...|..+++.+.+.|.+++-.+++....+....|.+. +.||-+|.+.+++.+.++. +.
T Consensus 1123 AieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f---i~- 1190 (1666)
T KOG0985|consen 1123 AIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF---IA- 1190 (1666)
T ss_pred HHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH---hc-
Confidence 77765332 256678888888888888888888887777766666555 4678888887765543322 11
Q ss_pred CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH---------
Q 010292 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE--------- 430 (513)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--------- 430 (513)
.++.... . .+.+-|...+.++.|.-+|... .-|..|...+...|++..|.+--++..
T Consensus 1191 --gpN~A~i-~-~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 --GPNVANI-Q-QVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred --CCCchhH-H-HHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 1111111 1 2455555556666655544321 124444444444555444443332211
Q ss_pred -------------hcCC--cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 431 -------------SAGW--RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 431 -------------~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (513)
-.|. -....-..-++..|-..|-+++-+.+++.-.... ......|+-|.-.|.+
T Consensus 1257 faCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 1121 1222334455666666666666666665543221 2233445555545544
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00066 Score=60.85 Aligned_cols=338 Identities=8% Similarity=0.082 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI- 233 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li- 233 (513)
++-....+++...+.|+-++-..+-+.+.. +.+---+|....-..-.+.+|++++...... .|+-...|.-+
T Consensus 120 ~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~A 192 (557)
T KOG3785|consen 120 TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMA 192 (557)
T ss_pred ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHH
Confidence 555556667777788887777766666554 2233344444444445788999999998865 46666666544
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--ccCHHHHH--H----------HHHHHHcCC--------
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT--AWMWGKVE--E----------IYQMMKAGP-------- 291 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~--~----------~~~~m~~~g-------- 291 (513)
-+|.+..-++-+.++++--... +.-++..-|.......+ .|+..+.+ + ..+.+.+++
T Consensus 193 LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 4556777777777887766643 22234455554444333 22221111 1 111111111
Q ss_pred ----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH-HHh-cCChhHHHHHHHHHHhC
Q 010292 292 ----VMPD-----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSK-CSVTDRIKKIEALMRLI 360 (513)
Q Consensus 292 ----~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~-~g~~~~a~~~~~~~~~~ 360 (513)
+-|. ...-..|+--|.+.+++.+|..+.+++.- ..|.......++.+ +++ .|.-+-..-+.+.|.-.
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 1111 12333455567788999999888766543 22333333333332 222 23333333344444444
Q ss_pred CCCC----cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010292 361 PEKE----YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436 (513)
Q Consensus 361 ~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 436 (513)
.+.. ..|. ...+..++.-..++++.+-.++.+..- ...++...| .+.++++..|++.+|+++|-.+....++
T Consensus 350 G~Sa~ecDTIpG-RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik- 425 (557)
T KOG3785|consen 350 GESALECDTIPG-RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK- 425 (557)
T ss_pred cccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-
Confidence 3332 3333 235777777778888888777765542 222333334 3788999999999999999887765555
Q ss_pred cHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010292 437 CRSLY-HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF-WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 437 ~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
|..+| ..|.++|.+++..+.|..++-.+... -+..+. ..+..-|-+.+.+--|.+.|+.+... .|+.+.|
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 45555 56678889999999998877666532 233333 34557788888888888888888754 4555544
No 103
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=0.00042 Score=64.17 Aligned_cols=145 Identities=8% Similarity=-0.092 Sum_probs=82.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
++..+-..+...++.++|+.+.+++.+..+.+..+|+.--.++...| +++++++.++++.+. -+-+..+|+...-.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence 44444455556666777777777776665555556665555555555 456777777666653 233344555444444
Q ss_pred HhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292 237 GRLLLV--DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 237 ~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
.+.|.. +.+..+++++.+... -|..+|+.....+.+.|+++++++.++++++.+.. |...|+.....+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 444442 455666666665443 25666666666666666666666666666665433 444444444333
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00099 Score=67.73 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 010292 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMEN-YKIDCSKKTFWIMYYAY 483 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~ 483 (513)
+.-++.-|...|-+++.+.+++... |.. ...-.|+-|.-.|.+- ++++..+-++-.-. .++ --+++++
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNi-------pKviRA~ 1351 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNI-------PKVIRAA 1351 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcch-------HHHHHHH
Confidence 5567777777777777777766543 221 1233455555555543 33433333332221 122 2588999
Q ss_pred HhcCCHhHHHHHHHHH
Q 010292 484 ATCGQRRKVNQVLGLM 499 (513)
Q Consensus 484 ~~~g~~~~A~~~~~~m 499 (513)
.++.-|.+..-++.+-
T Consensus 1352 eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1352 EQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999998888777654
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=0.00015 Score=75.81 Aligned_cols=133 Identities=6% Similarity=0.020 Sum_probs=62.8
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 265 (513)
....|-.-|......++.++|.+++++....-++.-. ...|.++++.-...|.-+...++|++..+.. -...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4445555555555555555555555555432111110 1234444444444444455555555554431 1123455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.+..+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5555555555555555555555442 112344555555555555555555555555444
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.46 E-value=0.00017 Score=70.56 Aligned_cols=167 Identities=8% Similarity=0.031 Sum_probs=87.1
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010292 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 385 (513)
......+..|+.+++.+..+.. -...|..+.+.|...|+++.|++.+-.- +. +.-.|..|.++|+|+.
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------~~----~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------DL----FKDAIDMYGKAGKWED 809 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc------ch----hHHHHHHHhccccHHH
Confidence 3344555566666655554422 2223455556666666666554443211 11 1125566666666666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
|.++-.+... .. .....|-+-..-+-.+|++.+|.+++-.+. .|+ ..|.+|-+.|..++.+++.++-.
T Consensus 810 a~kla~e~~~--~e-~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 810 AFKLAEECHG--PE-ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHhcC--ch-hHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 6655433222 11 123334444444445556655555543321 122 23556777777777777666543
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 466 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..-+ ..|...+..-|...|+.+.|.+-|-+.
T Consensus 878 ~d~l---~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 878 GDHL---HDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhh---hHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 2221 245666777788888888888766544
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=1.7e-05 Score=77.29 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=119.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010292 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (513)
..+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+-.+ -.||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 445555666666666666666554 255566666666666666666666555 245666666666655554
Q ss_pred CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHH
Q 010292 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389 (513)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 389 (513)
.-++.|.++.+..... .-..+.......++++.+.+-++.--++..-....|. .+..+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf--~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF--GLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH--hccHHHHHHhhhHHHHHH
Confidence 4555666665543221 0011111122245555555554444444444444452 245555566666666666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
|..-.. ..|.+...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+-|.+++|++.+.++..
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 655544 44555556666666666777666666666666665532 344455555556666666666666665543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=4.3e-05 Score=74.64 Aligned_cols=240 Identities=11% Similarity=0.048 Sum_probs=171.4
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 151 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
+.+|--..-..+...+.+.|-...|..+|+++ +.|.-+|.+|+..|+.++|.++..+..++ +||...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHH
Confidence 35555555667888889999999999999975 46788899999999999999999888764 79999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
.+.+......-+++|.++++..-.+ .-..+.....+.++++++.+.|+.-.+.+ ..-..+|-..-.+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9999988888899999999876542 11111222233688999999888755522 123567777777888889
Q ss_pred ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010292 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
+++.|.+.|...... -+.+...||.+-.+|.+.|+-.++...++...+..-.+...|.| .+....+.|.+++|.+.+
T Consensus 534 k~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN--ymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN--YMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec--hhhhhhhcccHHHHHHHH
Confidence 999999999887774 34467789999999999986665555444444444334444433 344567889999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHH
Q 010292 391 NDAFEHKTSVTTVRIMRCIVSS 412 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~ 412 (513)
.++........+..+...++..
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHH
Confidence 8877643322233334444433
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=6.1e-05 Score=67.34 Aligned_cols=185 Identities=10% Similarity=-0.104 Sum_probs=124.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--H
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--F 262 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ 262 (513)
....+..+...+...|++++|...|+++... .|+. .++..+..++.+.|++++|...++++.+....... .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 5677888888999999999999999999864 3432 46778889999999999999999999875432122 2
Q ss_pred HHHHHHHHHHHc--------cCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHH
Q 010292 263 TYNYLIAGYMTA--------WMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333 (513)
Q Consensus 263 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 333 (513)
++..+..++.+. |+.++|.+.|+.+... .|+. ..+..+.... . ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~------~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHH------HHH--------HH
Confidence 444445555544 7788999999998774 3442 2222221111 0 000 000 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
...+...|.+.|+++.|...++.+....+.. ..+.....+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1245667889999998888776665544332 22222336899999999999999999887664
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=0.003 Score=63.07 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=91.9
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHH----------HHHhC--------
Q 010292 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD----------LKKEA-------- 220 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----------m~~~~-------- 220 (513)
|..|=+.|-..|.+++|.++-+.--+-. =..||..-..-+-..++.+.|++.|++ |..++
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 3445556667788888888776533222 234666666666677888888888764 22220
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
.-..|...|.-....+-..|+++.|+.+|...++ |-+++...|-.|+.++|-++-++- -|...+.
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcY 971 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACY 971 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHH
Confidence 0122444455555556667888888888877764 455666666677777777666542 2555666
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 010292 301 LLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
.|.+.|-..|++.+|...|.+.
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 6777777777777777666553
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.001 Score=63.17 Aligned_cols=359 Identities=10% Similarity=-0.021 Sum_probs=207.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|...|...... -+++...|..-..+|++.|++++|++=-.+-.+..+.=...|+....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l----~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIML----SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHcc----CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 46788899888877664 35588889999999999999999988777666655444678999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHc----------
Q 010292 211 SLFRDLKKEANISPSIVTYNTLISVFGRL---LLVDHMEAAFQEIKDS---NLSPNVFTYNYLIAGYMTA---------- 274 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~---------- 274 (513)
.-|.+-.+. .+-|...++-+..++... ++.-.--.++..+... ........|..++..+-+.
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999988764 344566777777777211 0000000111111110 0000112233333322211
Q ss_pred cCHHHHHHHHHH-----HHcCC-------CCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHH
Q 010292 275 WMWGKVEEIYQM-----MKAGP-------VMP------------D----------TNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 275 g~~~~a~~~~~~-----m~~~g-------~~p------------~----------~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.++..+.-.+.. +...| ..| | ..-...+.++..+..+++.+.+-++
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 011111111110 00011 111 1 1234566777778888888999888
Q ss_pred HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--------hHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--------LNVLLIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~ 392 (513)
...+.. .+..-++..-.+|...|........ ..+-.+.+-..+ ..+.+..+|.+.++++.++..|.+
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~---c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIEL---CEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcc---hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 888764 4555566666677777755432221 111111111111 111244467777888888888877
Q ss_pred HHhcCCCCchHHH------------------------HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292 393 AFEHKTSVTTVRI------------------------MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448 (513)
Q Consensus 393 ~~~~~~~~~~~~~------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 448 (513)
.+.....+....- ...=.+.+.+.|++..|...|.++++.. +-|...|....-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 6554333221110 1112345566777888888888777665 33667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+.|.+..|+.=.+...+.+ ++....|..=..++....+|+.|++.|++-++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888777777766666654 444555555555566666777777777766554
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00018 Score=62.81 Aligned_cols=292 Identities=13% Similarity=0.113 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IAG 270 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~ 270 (513)
-+++.+..+.+..++++|++++..-.++ -+.+......|..+|-...++..|-..++++-.. .|...-|... ...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3666777777777777777777766653 1226666777777777777777777777777653 3444444332 234
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010292 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY--AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
+-+.+.+..|+++...|... ++...-..-+.+. ...+++..+..++++.... .+..+.+.......+.|+.+
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence 45667777777777776652 2322222222222 2355666666666554422 13333333344445666665
Q ss_pred HHHHHHHHHHhCCCCCcccch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH-------------------HHH
Q 010292 349 RIKKIEALMRLIPEKEYRPWL-NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR-------------------IMR 407 (513)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-------------------~~~ 407 (513)
.|.+-++..-+. .+..+.. | .+.-+..+.|+++.|++...+++++|.... ... .-+
T Consensus 162 aAvqkFqaAlqv--sGyqpllAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 162 AAVQKFQAALQV--SGYQPLLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHhh--cCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 443333322222 2333321 2 244445566677777777766666653321 000 001
Q ss_pred HHH-------HHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 408 CIV-------SSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 408 ~li-------~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
.++ ..+.+.|+++.|.+-+..|- +.....|+.|...+.-. -..+++-+..+-++-+.+.+ +....||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 122 22334566666666666552 11122333333222111 11233333333333333333 3456789999
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 010292 480 YYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~ 498 (513)
+-.||++.-++.|..++-+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 9999999888888877643
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=3.3e-05 Score=66.40 Aligned_cols=120 Identities=9% Similarity=0.068 Sum_probs=92.1
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hhH
Q 010292 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF-GRLLL--VDH 244 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~-~~~g~--~~~ 244 (513)
..++.+++...++...+.++.+...|..+...|...|++++|...|++..+. .+-|...+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 3666777888888877777778888888888888888888888888888764 233566777777653 56666 488
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
|.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888876543 6777888888888888888888888888774
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=0.00011 Score=63.20 Aligned_cols=162 Identities=14% Similarity=0.022 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|..+ ..+-..+.-.|+-+....+..........+....+..+....+.|++.+|...|.+... .-++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 4444 55566666777777777777776655445777777788888888888888888888875 45777888888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
+|-+.|+.+.|..-|.+..+.-. -+...+|.|.-.+.-.|+.+.|..++......+.. |...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 88888888888888888776533 24556666777777778888888888887765532 66666777777788888888
Q ss_pred HHHHHHH
Q 010292 315 MEKIYEL 321 (513)
Q Consensus 315 a~~~~~~ 321 (513)
|..+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 8777654
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.0017 Score=61.09 Aligned_cols=235 Identities=12% Similarity=-0.016 Sum_probs=154.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCChHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL---KTIGTYNALLGAYMYNGLSDK 208 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~ 208 (513)
-+++.-.++|+.+......+-.|... ++.-=.-..++..+.+.-+.++..+. ++...+...+.+......-..
T Consensus 217 ydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~ 292 (484)
T COG4783 217 YDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQ 292 (484)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccc
Confidence 35555556666665422222222222 11111223455556666666655433 245556666665554444344
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
+-.++.+-.+. .-...-|..-+. +...|+.+.|+..++.+..... -|..-+......+.+.++.++|.+.++.+.
T Consensus 293 ~~~~~~~~~~~---~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal 367 (484)
T COG4783 293 AADLLAKRSKR---GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKAL 367 (484)
T ss_pred hHHHHHHHhCc---cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 43333333221 123344554444 4467899999999999887633 355666666788999999999999999998
Q ss_pred cCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010292 289 AGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367 (513)
Q Consensus 289 ~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (513)
.. .|+ ......+..++.+.|++.+|..+++..... .+.|...|..|..+|...|+..++..+
T Consensus 368 ~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A-------------- 430 (484)
T COG4783 368 AL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA-------------- 430 (484)
T ss_pred hc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH--------------
Confidence 84 566 666777888999999999999999988776 456888999999999999987766554
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
....|...|+++.|+..+....+..
T Consensus 431 -----~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 -----RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4567778899999998887776653
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=7.1e-07 Score=52.57 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00056 Score=70.83 Aligned_cols=237 Identities=12% Similarity=0.127 Sum_probs=150.0
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+...|..|+..+...+++++|.++.+..... .|+.. .|-.+...+.+.++.+++..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 7889999999999999999999999977754 45543 333444466666665555444 23
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.......++.-+..+...|...+ -+...+..+..+|-+.|+.+++..+++++.+.. +.|..+.|-+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333334445544555555565532 345578888888999999999999999998876 56788888888888888 77
Q ss_pred hHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010292 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
++|.+... -.+..|....++.++.++|.++.... +.+...+-.+ .+
T Consensus 166 ~KA~~m~~----------------KAV~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i----------------~~ 211 (906)
T PRK14720 166 EKAITYLK----------------KAIYRFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRI----------------ER 211 (906)
T ss_pred HHHHHHHH----------------HHHHHHHhhhcchHHHHHHHHHHhcC--cccchHHHHH----------------HH
Confidence 77666533 23444666677888888887777632 2222222222 22
Q ss_pred HHHhc-CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 428 RAESA-GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 428 ~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
.+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22111 222223444455556666667777777777766654 234444555555554
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.35 E-value=8.9e-07 Score=52.14 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010292 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 507 (513)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777777776665
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.0031 Score=59.97 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010292 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 453 (513)
...+.+.|++..|.+.|.+++... |.+...|..-.-+|.+.|.+..|+.=-+...+... +....|.-=..++....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHH
Confidence 556778899999999999999854 77899999999999999999999887776665531 223334333444555678
Q ss_pred HHHHHHHHHHHHhCC
Q 010292 454 VEEMESVLKEMENYK 468 (513)
Q Consensus 454 ~~~A~~~~~~m~~~~ 468 (513)
++.|.+.|++-.+.+
T Consensus 442 ydkAleay~eale~d 456 (539)
T KOG0548|consen 442 YDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999988876
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.32 E-value=0.00068 Score=66.48 Aligned_cols=139 Identities=16% Similarity=0.221 Sum_probs=98.7
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
..+.+....+.+.+|+.+++.+..+... ..-|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 4456667889999999999988876432 3357778888999999999999986542 3456788899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.|++|.++-++.. |.+.....|-.-..-+-+.|++.+|+++|-.+.. |+. .|..|-+.|..++.+++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHH
Confidence 9999998876653 4455666676666667778888888877744332 442 3455666666666665554
Q ss_pred H
Q 010292 321 L 321 (513)
Q Consensus 321 ~ 321 (513)
+
T Consensus 875 k 875 (1636)
T KOG3616|consen 875 K 875 (1636)
T ss_pred H
Confidence 3
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1e-06 Score=51.50 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444555555555555555555554444444
No 122
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.5e-06 Score=50.77 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010292 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777777665
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00055 Score=70.07 Aligned_cols=183 Identities=7% Similarity=-0.059 Sum_probs=138.2
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
.+.+...+-.|..+..+.|+.++|..+++...+..+.+......+...+.+.+++++|+..+++.... -+-+....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45578899999999999999999999999999987778889999999999999999999999999864 2445567788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
+..++.+.|++++|..+|++....+. -+..++..+-.++-..|+.++|...|+...+. ..+....|+..+.-
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~------ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVD------ 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHH------
Confidence 88899999999999999999997432 24788888999999999999999999998763 12445566655433
Q ss_pred hHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHhc
Q 010292 312 LPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 344 (513)
+..-...++++.-.+ ......+...+|..|.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 233344555554332 222333445555555544
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=4.6e-05 Score=65.51 Aligned_cols=93 Identities=5% Similarity=0.016 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhcCCcccHhhHHHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY-FRCNA--VDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 449 (513)
+...|...|++++|...|++..+. .|.+..++..+..++ ...|+ .++|.+++++..+.... +...+..+...+.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~ 155 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAF 155 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH
Confidence 445555555555555555555542 233344444444432 34344 35555555555544422 3444444555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 010292 450 SQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~ 468 (513)
+.|++++|+..|+++.+..
T Consensus 156 ~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 156 MQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HcCCHHHHHHHHHHHHhhC
Confidence 5555555555555555443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00065 Score=69.51 Aligned_cols=179 Identities=9% Similarity=-0.028 Sum_probs=134.9
Q ss_pred chhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
++.....-+..-.+..+.|..+++...+. .|-+......+..++.+.+++++|+..+++.....+.+....+.+..
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 33333344444467889999999988764 23456667888999999999999999999999988889999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (513)
++.+.|++++|.++|+++... ..-+..++..+..++-+.|+.++|...|++..+.- .+....|+..+. ++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHH
Confidence 999999999999999999963 23347899999999999999999999999998642 245566666553 345
Q ss_pred HHHHHHHHHHcCC----CCCCHHHHHHHHHHHHhcC
Q 010292 279 KVEEIYQMMKAGP----VMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 279 ~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~g 310 (513)
.-..+++.+.-++ ......+...+|.-+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 5566677765543 3333455556666665543
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=7.9e-05 Score=64.09 Aligned_cols=135 Identities=16% Similarity=-0.030 Sum_probs=116.6
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
.+-|....+..+....+.|++..|...|.+.....++|...|+.+.-+|.+.|+.++|..-|.+..+- ..-+...+|.
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nN 173 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANN 173 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhh
Confidence 44577777889999999999999999999999988889999999999999999999999999999874 2334567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
|...+.-.|+.+.|..++......+. -|..+-..+.-.....|++++|.++...-..
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 99999999999999999999987654 3777777788888999999999998766544
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.24 E-value=9.6e-05 Score=59.98 Aligned_cols=90 Identities=11% Similarity=-0.177 Sum_probs=36.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
...+...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence 33334444444444444444321 122333444444444444444444444444443321 233344444444444444
Q ss_pred HHHHHHHHHHHHc
Q 010292 277 WGKVEEIYQMMKA 289 (513)
Q Consensus 277 ~~~a~~~~~~m~~ 289 (513)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=9.5e-05 Score=59.52 Aligned_cols=95 Identities=12% Similarity=-0.047 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
....+...+...|++++|.+.|+.+... .+.+...|..+...+.+.|++++|...+++..+.+. .+...+..+...+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 3333444444444444444444444332 122333444444444444444444444444433321 1333333344444
Q ss_pred HHccCHHHHHHHHHHHHc
Q 010292 272 MTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~ 289 (513)
...|++++|.+.|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=9.9e-05 Score=59.91 Aligned_cols=97 Identities=9% Similarity=-0.126 Sum_probs=86.5
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+...|++++|...|+......+.+...|..+...+.+.|++++|+..|+..... .+.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 45567778899999999999999999988779999999999999999999999999999963 3557789999999999
Q ss_pred hcCChhHHHHHHHHHHHCC
Q 010292 238 RLLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g 256 (513)
..|+.++|+..|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=0.00091 Score=67.96 Aligned_cols=110 Identities=6% Similarity=-0.005 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
+.|+..+++.++ ...++..+||+|.-. ...|++.-+..-|-.-..... -...+|..+-..+.+..+++.|...|..
T Consensus 800 ~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHh
Confidence 456666666555 223345566655433 444555555544444333221 2344565566666777888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292 464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
.+..+ +.|...|--........|+.-++..+|..
T Consensus 876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77765 44555565555555566666666665554
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0012 Score=57.06 Aligned_cols=50 Identities=6% Similarity=0.067 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 431 (513)
.+.+..|.-+|++|-++ .+++..+.+....++...|++++|..+++....
T Consensus 186 gek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred chhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34455555555554442 122333444444444455555555555554443
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0017 Score=56.19 Aligned_cols=251 Identities=10% Similarity=0.040 Sum_probs=135.6
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010292 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 244 (513)
-+.-.|++..++..-+...... .++..-..+-++|...|.+... ..+++. |-.|.......+.......++.+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~---~~eI~~--~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIV---ISEIKE--GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccc---cccccc--ccCChHHHHHHHHHHhhCcchhHH
Confidence 3344566666555444433321 1333444455666666665433 333432 224444555545454444555444
Q ss_pred HHH-HHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 245 MEA-AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 245 A~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
-+. +.+.+......-+......-...|+..|++++|++...... +......=...+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34444443333333333333456778888888888776621 33334444455667777888888888887
Q ss_pred hccCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCcccc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010292 324 HHVDGKEFPLIRAMICAYSKC-SVTDRIKKIEALMRLIPEKEYRPW-LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401 (513)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 401 (513)
+. .+..+.+-|..++.+. +.-+++..++-+|+++.++-...+ +-+-+..++...|++++|..++++.+.+....
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d- 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD- 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-
Confidence 74 2455566666666542 112346677777777777544444 21124455666788888888888887754433
Q ss_pred hHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhc
Q 010292 402 TVRIMRCIVSSYFRCNAV-DKLANFVKRAESA 432 (513)
Q Consensus 402 ~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 432 (513)
+.++..++-.-...|.. +...+.+..++..
T Consensus 241 -petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 241 -PETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 34444455444444543 3344555555543
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.0048 Score=58.74 Aligned_cols=210 Identities=17% Similarity=0.121 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010292 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYN---GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (513)
.+++..+++.....-.. +.-.|..+..---.. .+.+...++++++.....+.|+. +|..+|+...+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH
Confidence 45666666665543222 444444443321111 23777888888888765556664 78888999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 248 AFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 248 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+|.+..+.+..+ ++.+++++|..||. ++.+-|.++|+.=.+ .| -+..-...-+.-+...|+-..+..+|++....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999988777 89999999998876 688999999987443 33 23344456677778889999999999999998
Q ss_pred cCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHH
Q 010292 326 VDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 326 ~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~ 385 (513)
+..++ ...|..+++--..-|++..+.++.+.....-+.+.. ......+++-|.-.+.+..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 66665 468999999999999998877775544333331111 1112245666665554433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00042 Score=65.03 Aligned_cols=161 Identities=15% Similarity=0.041 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 010292 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNT 231 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~ 231 (513)
.|+...+...+........-..+..++.+-.+.+. ...-|..- ..+...|++++|+..++.+.+. .||.. -+..
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~ 345 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRGG-LAAQYGRA-LQTYLAGQYDEALKLLQPLIAA---QPDNPYYLEL 345 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCccc-hHHHHHHH-HHHHHhcccchHHHHHHHHHHh---CCCCHHHHHH
Confidence 35556666666655444444444444433333111 22233333 3445678888888888888764 45444 4445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
....+.+.++.++|.+.++.+... .|+ ...+-.+-.+|.+.|++.+|+.+++...... +-|...|..|.++|...|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence 567788888888888888888765 354 4455556678888888888888888776653 346778888888888888
Q ss_pred ChHHHHHHHHH
Q 010292 311 NLPRMEKIYEL 321 (513)
Q Consensus 311 ~~~~a~~~~~~ 321 (513)
+..++.....+
T Consensus 423 ~~~~a~~A~AE 433 (484)
T COG4783 423 NRAEALLARAE 433 (484)
T ss_pred chHHHHHHHHH
Confidence 87777665544
No 135
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.13 E-value=5.4e-05 Score=56.06 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHH
Q 010292 194 NALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLL--------VDHMEAAFQEIKDSNLSPNVFTY 264 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~g~~p~~~~~ 264 (513)
...|..+...+++.....+|+.+++. |+ .|+..+|+.++.+.++..- +-..+.++++|...+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455555667777777777777764 77 7777777777777665532 23344555666655666666666
Q ss_pred HHHHHHHHH
Q 010292 265 NYLIAGYMT 273 (513)
Q Consensus 265 ~~li~~~~~ 273 (513)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666555543
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0046 Score=53.16 Aligned_cols=190 Identities=11% Similarity=0.000 Sum_probs=133.6
Q ss_pred CChHHHHHHHHHHHHcCCCC-CCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010292 132 SRPRLALEVLNWRRRQAGYG-TPMTKEE-YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 209 (513)
+++++.++++..+......| ..++..+ |..++-+....|+.+.|..+++.+..+-+.+...--.-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 46777778777776655555 4455543 456666777889999999999998876543333222222334556899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+++++.+..+ -+-|.++|--=+-..-..|.--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++|.-
T Consensus 106 ~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999975 3566777766666666667777888777777654 446999999999999999999999999999887
Q ss_pred CCCCCCHH-HHHHHHHHHHh---cCChHHHHHHHHHHHhcc
Q 010292 290 GPVMPDTN-TYLLLLRGYAH---SGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 290 ~g~~p~~~-t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~ 326 (513)
+.|-.. .+..+...+.- ..+++.+.++|.+..+..
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 456443 33444444433 336777888888887753
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.10 E-value=6.9e-05 Score=71.00 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=102.8
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010292 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--K-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (513)
++..|.+.-..+.+-+......+++.+....+++.+.+++-+.....- . -..+.+++|+.|.+.|..++++++++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 334443332333455777778888888888888889888888876522 1 2456678999999999999999999887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 217 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.. +|+-||..++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 130 ~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 76 5999999999999999999999999999998888777666777777777766665
No 138
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=6.2e-05 Score=55.72 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHcCCCCCCHHHH
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPNVFTYNYLIAGYMTAWM--------WGKVEEIYQMMKAGPVMPDTNTY 299 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~t~ 299 (513)
-...|..|...+++.....+|+.++..|+ .|++.+|+.++.+.++..- .-+.+.+|+.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666666888888888888888888 8888888888887776432 23456677888888888888888
Q ss_pred HHHHHHHHh
Q 010292 300 LLLLRGYAH 308 (513)
Q Consensus 300 ~~ll~~~~~ 308 (513)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888777654
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00017 Score=57.99 Aligned_cols=107 Identities=10% Similarity=-0.109 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+......+...+.+.|++++|.+.|+.....++.+...|..+...+.+.|++++|..+|+...+. .+.+..++..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 44556677788889999999999999998877768899999999999999999999999998763 3556788888889
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 265 (513)
.+...|+++.|...|+...+.. |+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 9999999999999999988753 5544443
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.05 E-value=4.1e-06 Score=47.59 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554444
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.05 E-value=0.0056 Score=61.86 Aligned_cols=138 Identities=13% Similarity=0.117 Sum_probs=95.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010292 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
-.....+++.+|+....++.++ .||. .|..+++++ .+.|..++|..+++.....+.. |..|...+-.+|...|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence 3445677888888888888876 4554 344444443 5778888888888887766654 8888888888888888
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010292 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
+.++|..+|+...+. -|+..-...+..+|.+.+++.+-.++=-++.+. .+.+...+-+++..+..
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 888888888888773 477777778888888888776644444344332 33345555555555443
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=7.8e-05 Score=70.65 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=103.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+......++..+....+.+.+..++.+.+.... ...-..|..++|+.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 777888888888888889999999998886411 1112235579999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010292 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (513)
|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998877777888888888888776
No 143
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.03 E-value=0.00012 Score=61.50 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
-+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 35567777777777777777777777777765554
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00028 Score=66.68 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=54.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.|+..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|.+++++..+... -|......-...+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 3334444444455555555554432 2332 22244444444444445555444443221 2333344444444455
Q ss_pred cCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010292 275 WMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
++++.|+++.+++.+ ..|+ -.+|..|..+|...|+++.|+..++.+
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555544 2333 235555555555555555555555443
No 145
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.03 E-value=0.02 Score=57.16 Aligned_cols=325 Identities=11% Similarity=0.019 Sum_probs=200.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc-ccCCHHHHHHHHHHHHh--ccCC---CHhHHHHHHHHHHHc----
Q 010292 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG-RINNVDLAADLFAEAAN--KHLK---TIGTYNALLGAYMYN---- 203 (513)
Q Consensus 134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~--~~~~---~~~~~~~li~~~~~~---- 203 (513)
...|+.+++.-... ...++|...+-..-..|. +.+.+++++++-.+... .+.. ....|..+.-+|...
T Consensus 373 ~s~Av~ll~~~~~~--~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 373 DSKAVNLLRESLKK--SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred chHHHHHHHhhccc--ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 33455555533221 112445555555555554 44777777777766665 2221 345555555555432
Q ss_pred -------CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 204 -------GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 204 -------g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
....+++..+++..+..+-.|++..|-++- |+..++++.|.....+..+.+-.-+...|..|.-.+...++
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 225677888888876545556555555444 55667899999999999887666788899999888888999
Q ss_pred HHHHHHHHHHHHc-CCC------------------CCCHHHHHHHHHHHHhc---------C--------------ChHH
Q 010292 277 WGKVEEIYQMMKA-GPV------------------MPDTNTYLLLLRGYAHS---------G--------------NLPR 314 (513)
Q Consensus 277 ~~~a~~~~~~m~~-~g~------------------~p~~~t~~~ll~~~~~~---------g--------------~~~~ 314 (513)
+.+|+.+.+.... .|. .--..|+..++...-.. | +..+
T Consensus 529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 9999998877544 221 00123333333333200 0 1111
Q ss_pred HHHHHHHH--------HhccC-----------CCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010292 315 MEKIYELV--------KHHVD-----------GKE------FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369 (513)
Q Consensus 315 a~~~~~~~--------~~~~~-----------~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (513)
+.+....+ +..+. .|+ ...|......+.+.++.+++..++.....+.. ..++.
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~--l~~~~ 686 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP--LSASV 686 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch--hhHHH
Confidence 11111110 00110 111 11333444556666666666555444444332 22333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH--HHHHHHhcCCcccHhhHHHHHHH
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN--FVKRAESAGWRLCRSLYHSKMVM 447 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~m~~~~~~~~~~~~~~li~~ 447 (513)
+......+...|++++|.+.|..... ..|..+....++...+...|+..-|.. ++.++.+.+.. +...|-.+...
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v 763 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEV 763 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 33455667778999999999988777 445566678899999999998888888 99999988754 78899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 010292 448 YASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~ 467 (513)
+-+.|+.++|.+.|.-..+.
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHccchHHHHHHHHHHHhh
Confidence 99999999999999877654
No 146
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.02 E-value=0.0098 Score=53.46 Aligned_cols=257 Identities=8% Similarity=-0.054 Sum_probs=150.7
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHH---HHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----H---------
Q 010292 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNAL---LGAYMYNGLSDKCQSLFRDLKKEANISPSIV----T--------- 228 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----~--------- 228 (513)
.|...|+...|+.=++...+..+. .+.+- ...+.+.|.+++|..=|+...+. .|+.. .
T Consensus 81 ~yLAmGksk~al~Dl~rVlelKpD---F~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 81 VYLAMGKSKAALQDLSRVLELKPD---FMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred HHhhhcCCccchhhHHHHHhcCcc---HHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHH
Confidence 455566666666666666554221 11111 23456677777777777777653 23211 1
Q ss_pred ---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292 229 ---YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 229 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
....+..+.-.|+...|+.....+++..+ -|...|..-..+|...|++..|+.=++...+.. .-+..++--+-..
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L 232 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQL 232 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 12234445566788888888888887643 477777777888888888888877665554422 2245666666777
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH-------------HHHhcCChhHHHHHHHHHHhCCCCCc--ccchH
Q 010292 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC-------------AYSKCSVTDRIKKIEALMRLIPEKEY--RPWLN 370 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 370 (513)
+...|+.+.++....+..+. .||-..+-..-. .....+++-+..+..+...+..+... .-...
T Consensus 233 ~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 233 LYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred HHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 77788888887777777664 344332211111 11122333333333222222222111 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 433 (513)
..+-.++...+++.+|++...+.+. ..|.+..++.--..+|.-..++|.|+.=|+...+.+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 2355566677888888888888777 556677777777778888888888888888776554
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=7.6e-06 Score=46.46 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 455666666666666666666666655553
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00048 Score=56.10 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=66.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYN 230 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~ 230 (513)
.|..++..+ ..++...+.+.++.+...+..+ ....-.+...+...|++++|...|+..... . ||. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHH
Confidence 444444444 3566666666666666654433 222233345566666666666666666653 2 332 1233
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
.|...+...|++++|+..++...... .....+......|.+.|+.++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555666666666666665533222 2334455555666666666666666654
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0054 Score=52.75 Aligned_cols=51 Identities=8% Similarity=-0.015 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHHHHc---CC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 275 WMWGKVEEIYQMMKA---GP-VMPDTN-TYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 275 g~~~~a~~~~~~m~~---~g-~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
.+.+++.+++.+|+. .| ..++.. .|..++-+....|+.+.|..+++.+...
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~ 81 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR 81 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 355666666666553 23 334432 2334444445556666666666655554
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00038 Score=65.76 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=93.4
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
-..|+..+...++++.|.++|+++.+.. +.....+++.+...++..+|.+++++..+. .+-|......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 3455666667788888888888888764 345556777777788888888888888864 34466667777777888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.++.+.|+.+.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+-.
T Consensus 247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888887532 2445888888888888888888888877654
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.00057 Score=55.68 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHH
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--FTY 264 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 264 (513)
..|..++..+ ..++...+.+.++.+.... |+. ...-.+...+...|++++|...|+........++. ...
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3455555555 4788888888888888752 332 23334557778888888888888888876533322 234
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010292 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
-.|...+...|++++|+..++...... .....+......+.+.|+.++|...|+..
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 445677778888888888886644333 23445667778888888888888887653
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.87 E-value=0.00037 Score=58.58 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhc-----ccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010292 155 TKEEYTKGIKFAG-----RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 155 ~~~~~~~ll~~~~-----~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
|..+|..+++.|. +.|.++-....+..|.+-|+. |..+|+.|+..+=+ |.+- -..+|+.+-..
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 6666666666664 235556666666666666664 66666666665554 2221 12222222211
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
.-.+.+-|+.++++|...|+.||..++..+++.+.+.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 012356788999999999999999999999999877654
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.84 E-value=0.051 Score=55.94 Aligned_cols=180 Identities=8% Similarity=-0.071 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 393 (513)
.|...++..++. ...+..+|+.|--. ...|++.-+...+-.-....+.....|.| +...+.++.+++.|...|...
T Consensus 801 ~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N--lgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 801 TAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN--LGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec--cceeEEecccHHHhhHHHHhh
Confidence 444555544443 12234444444333 44454444444433333344445555543 444566777888888888776
Q ss_pred HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 010292 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA----ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN--- 466 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 466 (513)
.. ..|.+...|-.....-...|+.-+...+|..- ...|-.++..-|-+...-....|+.++-+...+.+-.
T Consensus 877 qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 877 QS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 55 44555555554444445567777777777652 1233344444444444445566666655444333322
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 467 ------YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 467 ------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.+.+-+...|.+.....-+.+.++.|.++..+.
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 244556667777777777777777777766654
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.00068 Score=61.91 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA-YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
.+|..+++..-+.+..+.|..+|.+..+.+.-+..+|-..... |...++.+.|..+|+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 3567777777777778888888888775443344444444444 22345666688888887765 45566777777777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+.+.|+.+.|..+|++.... + +.. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887754 2 333 3777777777777777777777777766
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.0012 Score=51.64 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=43.4
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010292 160 TKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISV 235 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~ 235 (513)
-.+...+.+.|++++|.+.|+.+......+ ...+..+...+.+.|++++|...|+.+.....-.+ ....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444445555555555555554433211 23344445555555555555555555543210000 12334444444
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 010292 236 FGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~ 255 (513)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 45555555555555555443
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00054 Score=50.70 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010292 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...|+....... .+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 33444444455555555555554432 122223444444555555555555555555444322 122344445555555
Q ss_pred ccCHHHHHHHHHHHHc
Q 010292 274 AWMWGKVEEIYQMMKA 289 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~ 289 (513)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555555443
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.70 E-value=0.046 Score=51.30 Aligned_cols=373 Identities=10% Similarity=0.033 Sum_probs=178.3
Q ss_pred HHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh--cccCCHHHHHHHHHHHHhc--cC--C--CHhHH-
Q 010292 124 VELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFA--GRINNVDLAADLFAEAANK--HL--K--TIGTY- 193 (513)
Q Consensus 124 ~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~--~~--~--~~~~~- 193 (513)
+.++.++ ..+.+.-.......++.. |.. .|-.+..++ -+.+.+++|.+.+..-..+ +. + +...+
T Consensus 50 grilnAffl~nld~Me~~l~~l~~~~--~~s----~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 50 GRILNAFFLNNLDLMEKQLMELRQQF--GKS----AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHhc--CCc----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 3444444 345555555555555532 222 344444443 4678888888877765543 21 1 32221
Q ss_pred --------HHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---------------hhHHHH
Q 010292 194 --------NALLGAYMYNGLSDKCQSLFRDLKKEA---NISPSIVTYNTLISVFGRLLL---------------VDHMEA 247 (513)
Q Consensus 194 --------~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~p~~~~~~~li~~~~~~g~---------------~~~A~~ 247 (513)
+..+..+...|++.++..++++|..+. ...-|..+||.++-.+++.=- ++.+.-
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilf 203 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILF 203 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence 445667788889999988888887641 122577888876665554311 122222
Q ss_pred HHHHHHHC------CCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 010292 248 AFQEIKDS------NLSPNVFTYNYLIAGYMTAW--MWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 248 ~~~~m~~~------g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
..++|... .+.|.......++....-.. +..--.++++.-...-+.|+. -....|+..+.. +.+++..+
T Consensus 204 Y~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ 281 (549)
T PF07079_consen 204 YLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF 281 (549)
T ss_pred HHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence 22222211 12233333333332222111 111112222222222334442 122222222222 33333333
Q ss_pred HHHHHhccCCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------------------------
Q 010292 319 YELVKHHVDGK----EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE------------------------------ 364 (513)
Q Consensus 319 ~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------------------------ 364 (513)
-+.+....+.+ =..++..++....+.++...|.+.+.++.-..+..
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 33222211100 12345555555555555555555555554443322
Q ss_pred -----------cccch-HHHHH---HHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHH----HHHHhc---CcHHH
Q 010292 365 -----------YRPWL-NVLLI---RVYAKEDC-LEEMEKSINDAFEHKTSVTTVRIMRCIV----SSYFRC---NAVDK 421 (513)
Q Consensus 365 -----------~~~~~-~~~li---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---~~~~~ 421 (513)
+...- ...|+ .-+-+.|. -++|+++++.+++ ..+.+...-|.+. .+|... ..+..
T Consensus 362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11110 00011 11222333 5667777766665 2233333222222 222221 12223
Q ss_pred HHHHHHHHHhcCCcccH----hhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010292 422 LANFVKRAESAGWRLCR----SLYHSKMV--MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495 (513)
Q Consensus 422 a~~~~~~m~~~~~~~~~----~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (513)
-..+-+-+.+.|+.|-. ..-|.|-+ .+...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333344566766532 33344433 33468888888765554444 679999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCC
Q 010292 496 LGLMCKNGYDVPVNAFPS 513 (513)
Q Consensus 496 ~~~m~~~g~~p~~~t~~S 513 (513)
+.+ ++|+..+++|
T Consensus 518 l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 518 LQK-----LPPNERMRDS 530 (549)
T ss_pred HHh-----CCCchhhHHH
Confidence 985 3556555543
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.0047 Score=56.70 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=107.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292 268 IAGYMTAWMWGKVEEIYQMMKA----GPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
...|-..|++++|.+.|.+... .|-.. -...|......|.+. ++++|.+.++ ..+..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~A~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------KAIEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------HHHHHHH
Confidence 3455666777777776666432 11000 122233333333222 5555555444 3445677
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcC
Q 010292 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-DCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCN 417 (513)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~ 417 (513)
..|++..+-++.. -+...|-.. |++++|.+.|++..+ .+....-..++..+...+.+.|
T Consensus 106 ~~G~~~~aA~~~~----------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 106 EAGRFSQAAKCLK----------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HCT-HHHHHHHHH----------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred hcCcHHHHHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 7777776655533 356666666 788888888776554 2221222345667778888899
Q ss_pred cHHHHHHHHHHHHhcCC-----cccHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhc-
Q 010292 418 AVDKLANFVKRAESAGW-----RLCRS-LYHSKMVMYASQRRVEEMESVLKEMENYK--IDCS--KKTFWIMYYAYATC- 486 (513)
Q Consensus 418 ~~~~a~~~~~~m~~~~~-----~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~- 486 (513)
++++|.++|++...... +.+.. .|-..+-++...|++-.|.+.+++..... +..+ ......|+.+|-..
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 99999999988765332 22222 22233445566788999999999887653 3222 34455666666542
Q ss_pred -CCHhHHHHHHHHH
Q 010292 487 -GQRRKVNQVLGLM 499 (513)
Q Consensus 487 -g~~~~A~~~~~~m 499 (513)
..++.|+.-|+.+
T Consensus 250 ~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 250 VEAFTEAVAEYDSI 263 (282)
T ss_dssp CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHccc
Confidence 2345555444443
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=0.00017 Score=52.38 Aligned_cols=80 Identities=10% Similarity=0.063 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHH
Q 010292 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460 (513)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (513)
|+++.|+.+++++.+.....++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555555332111222233345555555555555555544 111111 112222334444555555555555
Q ss_pred HH
Q 010292 461 LK 462 (513)
Q Consensus 461 ~~ 462 (513)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.0013 Score=48.62 Aligned_cols=91 Identities=12% Similarity=0.142 Sum_probs=47.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
+...+...|++++|..+++.+.+.... +...+..+...+...|++++|.+.++.....+ +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 344444555555555555555433211 22334445555555566666666666555443 2233455556666666666
Q ss_pred HhHHHHHHHHHHH
Q 010292 489 RRKVNQVLGLMCK 501 (513)
Q Consensus 489 ~~~A~~~~~~m~~ 501 (513)
++.|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655543
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0019 Score=59.02 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS-YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
.++...-+.+..+.|..+|.+..+.+...... |-..... |...++.+.|..+|+...+. +.-+...|...++.+.+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 45666666667777777877776543333333 3333333 33356666688888876643 33456667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 451 QRRVEEMESVLKEMENYKIDCSK---KTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.|+.+.|..+|+..... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888877754 33222 47777777777788888777777777653
No 162
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.60 E-value=0.0015 Score=59.87 Aligned_cols=132 Identities=12% Similarity=0.027 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcCCc-ccHhhHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE----SAGWR-LCRSLYH 442 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~ 442 (513)
.|...|.-.|+++.|+..-+.-++ -|.....-..+..+.+++.-.|+++.|.+.|+... +.|-+ .......
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 355555566788888866543222 23333334457778888888999999999888643 33321 1223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 443 SKMVMYASQRRVEEMESVLKEMEN----Y-KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
+|...|.-..+++.|+.++.+-.. . +..-....|++|..+|...|..++|+.+.+.-.+..
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 566677777788888887764322 1 122356789999999999999999998877665443
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0037 Score=48.76 Aligned_cols=96 Identities=11% Similarity=-0.076 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYN 265 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~ 265 (513)
++..+...+.+.|++++|.+.|+.+... .|+ ...+..+..++.+.|+++.|...|+++...... ....++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK---YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4555566666677777777777777653 122 234555666666777777777777766653211 1134455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 266 YLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
.+..++.+.|+.++|.+.++++.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5556666666666776666666654
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0039 Score=61.91 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+...|.++.-.+...|++++|...+++.... .|+...|..+...+...|+.++|.+.+++..+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4455665555555567777777777776663 356666777777777777777777777666654
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.0003 Score=51.06 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=61.0
Q ss_pred cCcHHHHHHHHHHHHhcCCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010292 416 CNAVDKLANFVKRAESAGWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494 (513)
Q Consensus 416 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (513)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|+.+++. ...+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999876542 3455566688999999999999999988 3332 1233555567899999999999999
Q ss_pred HHHH
Q 010292 495 VLGL 498 (513)
Q Consensus 495 ~~~~ 498 (513)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9886
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.51 E-value=0.0055 Score=49.27 Aligned_cols=92 Identities=7% Similarity=-0.155 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 452 (513)
+..-+...|++++|.++|+-... ..|.+..-|..|.-+|-..|++++|++.|........ -|...+-.+..++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 66667788899999998888777 4455566677788888888899999999888877664 36667777788888889
Q ss_pred CHHHHHHHHHHHHhC
Q 010292 453 RVEEMESVLKEMENY 467 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~ 467 (513)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999998888876653
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00042 Score=47.89 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=39.9
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
+.|++++|.++|+.+....+.+...+..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 4567777777777776665556666667777777777777777777777654 4554444433
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.0044 Score=52.13 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
.+...+...|++++|...|++.+.....++ ....+..+...+.+.|++++|...+.+..+.... +...+..+...|..
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 118 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 455566667777777777777665433222 2345666666777777777777777766654322 34445555555655
Q ss_pred cCCHHH
Q 010292 451 QRRVEE 456 (513)
Q Consensus 451 ~g~~~~ 456 (513)
.|+...
T Consensus 119 ~g~~~~ 124 (172)
T PRK02603 119 RGEKAE 124 (172)
T ss_pred cCChHh
Confidence 555433
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.45 E-value=0.17 Score=51.64 Aligned_cols=199 Identities=12% Similarity=-0.001 Sum_probs=132.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 010292 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM 201 (513)
Q Consensus 122 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 201 (513)
.+.++...-.+++++|..+++.....+. -|..+...+-..|...++.++|..+|++.....+. ......+..+|+
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayv 121 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence 3344444446788889888876655432 28889999999999999999999999999886554 777777888899
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 010292 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----------LVDHMEAAFQEIKDSN-LSPNVFTYNYLIAG 270 (513)
Q Consensus 202 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~ 270 (513)
+.+.+.+-.++=-+|-+. .+-+...+=++++.....- -+.-|.+.++.+.+.+ -.-+..-.-.-...
T Consensus 122 R~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 988887766666666653 3334455555555544321 1345777788777654 21122222222334
Q ss_pred HHHccCHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010292 271 YMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
+-..|.+++|+.++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 456788999999983 344433333455555667777888888888888888877654
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.014 Score=49.11 Aligned_cols=86 Identities=9% Similarity=-0.057 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-S-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
...|..+...+...|++++|...|++..+. .-.+ + ...+..+...+.+.|++++|...+++..+... -+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 444555555555666666666666655532 1111 1 23455555556666666666666665554321 133444444
Q ss_pred HHHHHHccCH
Q 010292 268 IAGYMTAWMW 277 (513)
Q Consensus 268 i~~~~~~g~~ 277 (513)
...+...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 4555555543
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.0049 Score=58.48 Aligned_cols=100 Identities=16% Similarity=0.037 Sum_probs=72.9
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
..+...|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..+++.... -+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 44556788888888888888776667778888888888888888888888888753 2335667777778888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 244 HMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+|+..|++..+.. |+......+
T Consensus 88 eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHH
Confidence 8888888877643 444333333
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0075 Score=57.26 Aligned_cols=104 Identities=8% Similarity=-0.053 Sum_probs=83.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
...+...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 45567889999999999999874 244667888889999999999999999999988653 367788888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
+++|...|++..+. .|+......++..
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 99999999999873 4665444444433
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.0011 Score=45.22 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=39.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
...+.+.|++++|.+.|+++.+..+.+...|..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777777777777777766556777777777777777777777777777653
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0086 Score=50.16 Aligned_cols=96 Identities=5% Similarity=-0.192 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
...|..+...+...|++++|...+++.......+ ...+|..+...|...|++++|+..++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666667777788888888888776543222 23456677777888888888888888777653 33345555666
Q ss_pred HHHH-------hcCCHhHHHHHHHHH
Q 010292 481 YAYA-------TCGQRRKVNQVLGLM 499 (513)
Q Consensus 481 ~~~~-------~~g~~~~A~~~~~~m 499 (513)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6665 777777665555543
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.049 Score=50.02 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=74.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh----cCCc-ccHhhHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES----AGWR-LCRSLYHSKMV 446 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~ 446 (513)
.+..|...|++..|-+. +..+...|... |++++|.+.|.+..+ .+.. --...+..+..
T Consensus 100 A~~~y~~~G~~~~aA~~----------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKC----------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHH----------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55666666666665544 44455567777 899999999887643 2311 11344677788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 447 MYASQRRVEEMESVLKEMENYKID-----CSKK-TFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+.+.|++++|.++|++....-.. .+.. .|-..+-++...|+...|.+.+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999998765322 2222 3344555777889999999999988754
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0076 Score=50.49 Aligned_cols=96 Identities=6% Similarity=-0.193 Sum_probs=56.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
....|..+...+...|++++|+..|++......-.+ ...+|..+...+...|++++|+..+++...... ....+++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 355666677777777788888887777764311111 124666777777777777777777777765422 233445555
Q ss_pred HHHHH-------HccCHHHHHHHHH
Q 010292 268 IAGYM-------TAWMWGKVEEIYQ 285 (513)
Q Consensus 268 i~~~~-------~~g~~~~a~~~~~ 285 (513)
...+. +.|++++|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55555 4455554444333
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.13 Score=45.90 Aligned_cols=177 Identities=13% Similarity=0.050 Sum_probs=99.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTY---NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.....+.+.|++++|.+.|+.+....+.+...- -.+..++.+.+++++|...|++..+...-.|+. -|...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHh
Confidence 344445678999999999999988655443333 455677888999999999999998764333433 3333333332
Q ss_pred h--cC---------------C---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHH
Q 010292 238 R--LL---------------L---VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297 (513)
Q Consensus 238 ~--~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 297 (513)
. .+ | ...|...|+++++. |-...-..+|...+..+... .- .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---la-~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---LA-K 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---HH-H
Confidence 1 11 1 12344444444433 22222234444433333220 00 0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 298 TYLLLLRGYAHSGNLPRMEKIYELVKHH--VDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
---.+.+-|.+.|++..|..-++.+.+. +.+........++.+|.+.|..+.+..+..++
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1124556677778888888777777764 22223344556666777777776666655544
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.21 E-value=0.016 Score=46.66 Aligned_cols=96 Identities=8% Similarity=0.009 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
..-.+...+...|++++|..+|+-+...... +..-|-.|..++-..|++++|+..|......+ +-|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3445666778899999999999988766543 55667778888889999999999999999887 568899999999999
Q ss_pred hcCCHhHHHHHHHHHHHC
Q 010292 485 TCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 485 ~~g~~~~A~~~~~~m~~~ 502 (513)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999977654
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.034 Score=49.54 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHH
Q 010292 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR---LLLVDHMEAAF 249 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 249 (513)
+....-++.-...++.|...|-.|..+|...|+.+.|..-|.+..+..| +|...+..+..++.. ..+-.++..+|
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3334444444555555889999999999999999999999998887543 444444444444332 23456788888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
+++..... -|+.+-..|-..+...|++.+|...++.|.+.. |....+..+|.
T Consensus 217 ~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 88887543 366667777778888888888888888888743 33334444443
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.02 E-value=0.28 Score=45.52 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=61.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 452 (513)
.|.-+...|+...|.++-++ ...++...|-.-+.+++..++|++-.++-.. . -++..|..++.+|.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~-----Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKE-----FKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHH-----cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCC
Confidence 35555666666666665443 2344566666777777777777766655332 1 13456777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010292 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (513)
+..+|..++..+. +..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 7777777766621 23455666666666666544
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.02 E-value=0.078 Score=52.83 Aligned_cols=59 Identities=7% Similarity=-0.110 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
..|..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444333344455555555555555433 34445555555555555555444444333
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.01 E-value=0.0043 Score=42.29 Aligned_cols=56 Identities=5% Similarity=-0.002 Sum_probs=34.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
...+.+.|++++|...|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666666666655 33555666666666666666666666666654
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.013 Score=51.92 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=74.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010292 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 456 (513)
+.+.+++++|+..|.+.++ ..|.+...|..=..+|++.|.++.|.+=-+........ ...+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4566788888888888887 55666767777788888888888888777776654422 35678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 457 MESVLKEMENYKIDCSKKTFWIMYYA 482 (513)
Q Consensus 457 A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (513)
|++.|++..+ +.|+..+|..=+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 8888888776 44666666654443
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.0047 Score=42.68 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKK 218 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 218 (513)
...|..+...+.+.|++++|+..|++..+.++.+...|..+..+|...| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554445555555555555555 45555555555443
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0057 Score=42.11 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
...|++++|+++|+++... .+-|...+..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3556677777777776654 2335556666667777777777777777766654 2444444433
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.027 Score=50.66 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTY 229 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~ 229 (513)
..|...+..+.+.|++++|...|+.+.+..+.+ ...+-.+...|...|++++|...|+.+.+.+ |+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHH
Confidence 344454544455566666666666666654432 3455566666666666666666666666431 22 2333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292 230 NTLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
-.+...+...|+.+.|..+|+++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555566666666666666553
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.91 E-value=0.0051 Score=42.50 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=37.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 010292 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG-QRRKVNQVLGLMCK 501 (513)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 501 (513)
...|..+...+...|++++|+..|++..+.+ +-+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555556666666666666666666554 335555666666666666 46666666665543
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.88 E-value=0.057 Score=52.86 Aligned_cols=262 Identities=11% Similarity=0.064 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHcCC
Q 010292 223 SPSIVTYNTLISVFGRLLLVDHMEAA---------FQEIKDSNLSPNVFTYNYLIAGYMTAWMW--GKVEEIYQMMKAGP 291 (513)
Q Consensus 223 ~p~~~~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g 291 (513)
.|..+.+.+=+-.|...|.+++|.++ ++.+-.. ..+...+++.=.+|.+-.+. -+...-+++|+++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 44455566666667777777776543 2222211 12344455566677665543 34555567788888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010292 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD----GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (513)
-.|+... +...|+-.|++.+|-++|.+--...- -.|...| .+.+-|.+.|..++-....+.-.+....--.|
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 8888643 44556677888888888865322110 0111111 12333444444332222211111100001111
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHH-----H-H--hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010292 368 WLNVLLIRVYAKEDCLEEMEKSIND-----A-F--EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439 (513)
Q Consensus 368 ~~~~~li~~~~~~~~~~~a~~~~~~-----~-~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 439 (513)
. +....+...|+.++|..+.-+ | . .+.....+..+...+..-+-+...+..|-++|..|-+.
T Consensus 707 k---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 707 K---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred H---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1 233344445555555544211 0 0 11122223334444444455566667777787776432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK-----------KTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
..+++.....++|.+|..+-+...+. .||. .-|.-.=++|.++|+..+|..+++++....+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 35677888899999999998877652 3332 2244455789999999999999998866544
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.88 E-value=0.37 Score=44.59 Aligned_cols=284 Identities=11% Similarity=0.046 Sum_probs=171.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhccCCCHhH----HHHHHHHH
Q 010292 127 MKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT----YNALLGAY 200 (513)
Q Consensus 127 l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~----~~~li~~~ 200 (513)
|.+-+++...|..+-..-.+. +.-|....-.++.+-. -.|+.+.|.+-|+.|.. +.++ ...|.-.-
T Consensus 93 iAagAGda~lARkmt~~~~~l----lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleA 164 (531)
T COG3898 93 IAAGAGDASLARKMTARASKL----LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEA 164 (531)
T ss_pred hhhccCchHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHH
Confidence 333356777776655544322 3345555555655543 46899999999999886 3333 23333334
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHH---
Q 010292 201 MYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVF--TYNYLIAGYMT--- 273 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~--- 273 (513)
-+.|..+.|...-++.-.. .|. ...+...+...|..|+|+.|+++++.-++.. +.+++. .-..|+.+-..
T Consensus 165 qr~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 165 QRLGAREAARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HhcccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 5678888888888777643 344 3577888888999999999999988776542 344432 22333333221
Q ss_pred ccCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh--hHH
Q 010292 274 AWMWGKVEEIYQMMKAGPVMPDTN-TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT--DRI 350 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a 350 (513)
.-+...|...-.+..+ +.||-. .-..-..++.+.|++.++-.+++.+-+....|++. .+..+.+.|+. +.+
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRl 315 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHH
Confidence 2244455555444443 456632 33445677889999999999999998876655543 23345566653 232
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Q 010292 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-CNAVDKLANFVKRA 429 (513)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m 429 (513)
.. .+.+..|.+++..+.. .+..+-...|++..|..--+.... . .|....|..|.+.-.. .|+-.++.+.+.+.
T Consensus 316 kR-a~~L~slk~nnaes~~--~va~aAlda~e~~~ARa~Aeaa~r--~-~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KR-AKKLESLKPNNAESSL--AVAEAALDAGEFSAARAKAEAAAR--E-APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HH-HHHHHhcCccchHHHH--HHHHHHHhccchHHHHHHHHHHhh--h-CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 22 2345666666665553 466777777888777655444333 2 2234556555544333 48888888888877
Q ss_pred HhcC
Q 010292 430 ESAG 433 (513)
Q Consensus 430 ~~~~ 433 (513)
.+.-
T Consensus 390 v~AP 393 (531)
T COG3898 390 VKAP 393 (531)
T ss_pred hcCC
Confidence 6543
No 190
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.85 E-value=0.036 Score=43.40 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc----------------CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKH----------------LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
|..++..+|.++++.|+++....+++..-.-+ .|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45567778888888888887777776542111 02445555555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 010292 219 EANISPSIVTYNTLISVFG 237 (513)
Q Consensus 219 ~~g~~p~~~~~~~li~~~~ 237 (513)
.++++-+..+|..|+.-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 5555555555555555443
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.81 E-value=0.34 Score=43.21 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=34.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 444 KMVMYASQRRVEEMESVLKEMENY--KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 445566667777777777666653 22334445556667777777777776665544
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.019 Score=46.79 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----HCCCCCCCC
Q 010292 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-----KNGYDVPVN 509 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~ 509 (513)
....++..+...|++++|..+.+.+...+ +.|...|..+|.+|...|+...|.++|+++. +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 35566777888999999999999999877 6788899999999999999999999998763 458888753
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.80 E-value=0.099 Score=40.50 Aligned_cols=103 Identities=16% Similarity=0.041 Sum_probs=58.4
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 010292 163 IKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISV 235 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~ 235 (513)
-.++-..|+.++|+.+|++....|... ...+-.+...+...|++++|+.+|++...+ .|+ ......+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHH
Confidence 344555677777777777777766542 334445556666777777777777776654 233 1122223345
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (513)
+...|+.++|.+.+-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5666777777766655443 33334554444443
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.80 E-value=0.0093 Score=48.61 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=42.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVT 228 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~ 228 (513)
+...++..+...|++++|..+.+.+....+-+...|..+|.+|...|+..+|++.|+.+.+ +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455566666677777777777777766655677777777777777777777777766532 2366666544
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.32 Score=42.46 Aligned_cols=128 Identities=11% Similarity=-0.023 Sum_probs=61.1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 010292 160 TKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI----- 233 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li----- 233 (513)
+.++..+.-.|.+.-...++.+..+.+.+ ++..-..|++.-.+.|+.+.|...|+...+.. -+.|..+++.++
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhh
Confidence 44455555555555556666665555544 55555555555566666666666666554431 122333332222
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
..|.-.+++..|...|++...... .|...-|.=.-+..-.|+..+|++..+.|++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223333445555555555544322 1333333333333334455555555555554
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.77 E-value=0.46 Score=44.15 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010292 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412 (513)
Q Consensus 333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 412 (513)
+.+..|.-+...|+...|.++.+.| .-++-.-|. ..+.+|+..++|++..++... ...| . -|..++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~--lki~aLa~~~~w~eL~~fa~s----kKsP--I-GyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWW--LKIKALAENKDWDELEKFAKS----KKSP--I-GYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHH--HHHHHHHhcCCHHHHHHHHhC----CCCC--C-ChHHHHHH
Confidence 3455566677788777666655444 333333342 689999999999998876432 1222 2 37888999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+.--+..
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999999999998872 23456788999999999988765543
No 197
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.76 E-value=0.012 Score=51.49 Aligned_cols=116 Identities=12% Similarity=0.206 Sum_probs=74.4
Q ss_pred CHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010292 189 TIGTYNALLGAYMYN-----GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263 (513)
Q Consensus 189 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 263 (513)
+..+|-+.+..+... +.++-.-..++.|.+ +|+.-|..+|+.||+.+-+.. +.|...
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk----------------fiP~nv- 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK----------------FIPQNV- 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence 677777777777653 455555666677775 588888888888887764432 112211
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL-PRMEKIYELVKH 324 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~ 324 (513)
+..+.-.|-+ +-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-+
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111111222 2345789999999999999999999999999888753 334444444433
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.70 E-value=0.14 Score=39.66 Aligned_cols=88 Identities=16% Similarity=0.021 Sum_probs=46.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 010292 198 GAYMYNGLSDKCQSLFRDLKKEANISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN----VFTYNYLIAGY 271 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~ 271 (513)
.++-..|+.++|+.+|++.... |+... ...+-.+...+...|++++|..+|++..... |+ ......+.-++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 4445566666666666666653 54433 2244455566666666666666666665432 22 11112222344
Q ss_pred HHccCHHHHHHHHHHHH
Q 010292 272 MTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~ 288 (513)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666554443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.68 E-value=0.013 Score=40.90 Aligned_cols=56 Identities=5% Similarity=-0.045 Sum_probs=40.7
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
.+|.+.+++++|.++++.+...++.+...|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777766667777777777777777777777777777754
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.41 Score=41.84 Aligned_cols=132 Identities=7% Similarity=-0.050 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA-- 269 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-- 269 (513)
+.+.++..+.-.|.+.-....+++..+. .-+.+......|++.-.+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556666666667777777777777764 3345566666677777777777777777776664433344444444432
Q ss_pred ---HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 270 ---GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 270 ---~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
.|.-.+++..|...|.+.....- -|....|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566667777766655431 13334443333334456677777777777664
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=0.75 Score=45.91 Aligned_cols=241 Identities=11% Similarity=0.067 Sum_probs=138.3
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010292 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 259 (513)
|.+..|..|.......-.++-|...|-+...-.|++.-. ..-.+=|.+ --|.+++|++++-+|..+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence 456788888877777667777777776554322332111 111111222 2478888888888776543
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010292 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (513)
..|..+.+.|++-.+.++++.=-. +. +--...|+.+...++....+++|.+.+..-... ...
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 246667788888887777654211 11 112457788888888888888888887654331 234
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010292 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417 (513)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 417 (513)
+++|.+...+++.+ ...+.++++...-- .|...+...|..++|.+.|-+- ..| .+.+..|...+
T Consensus 829 ~ecly~le~f~~LE---~la~~Lpe~s~llp---~~a~mf~svGMC~qAV~a~Lr~-----s~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 829 IECLYRLELFGELE---VLARTLPEDSELLP---VMADMFTSVGMCDQAVEAYLRR-----SLP-----KAAVHTCVELN 892 (1189)
T ss_pred HHHHHHHHhhhhHH---HHHHhcCcccchHH---HHHHHHHhhchHHHHHHHHHhc-----cCc-----HHHHHHHHHHH
Confidence 55666555554333 23334444332222 4778888888888888776331 111 13466788888
Q ss_pred cHHHHHHHHHHHHhcCCc-----------ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 418 AVDKLANFVKRAESAGWR-----------LCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 418 ~~~~a~~~~~~m~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
++.+|.++-++..-..+. -+..+ .--|..+-+.|+.-+|.+++.+|.+
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence 888887776643211110 00011 1124456677777777777777754
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.98 Score=45.16 Aligned_cols=49 Identities=6% Similarity=-0.075 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHhH
Q 010292 443 SKMVMYASQRRVEEMESVLKEMEN-YKIDCSKKTFWIMYYAYATCGQRRK 491 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~ 491 (513)
.|..--...|.++.|.+.--.+.+ .++-|....|..|.-+.+....+..
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGt 1075 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGT 1075 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhh
Confidence 333444567888888876554443 2466778888877766555444433
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.051 Score=50.29 Aligned_cols=264 Identities=10% Similarity=-0.030 Sum_probs=136.4
Q ss_pred hcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHH--HH-hCCCCC-CHHHHHHHHHHHH
Q 010292 166 AGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDL--KK-EANISP-SIVTYNTLISVFG 237 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m--~~-~~g~~p-~~~~~~~li~~~~ 237 (513)
+++.|+....+.+|+...+-|-.| ..+|..|..+|.-.+++++|+++...= .. ..|-+. ...+...|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 577777777778887777766544 234666667777777777777764311 00 001110 1112222333333
Q ss_pred hcCChhHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHH----H
Q 010292 238 RLLLVDHMEAAFQE----IKDSNL-SPNVFTYNYLIAGYMTAWM--------------------WGKVEEIYQMM----K 288 (513)
Q Consensus 238 ~~g~~~~A~~~~~~----m~~~g~-~p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m----~ 288 (513)
-.|.+++|...-.+ ..+.|- ......+-.+...|...|+ ++.|.++|.+= .
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444322111 011110 0112222234444444332 23344444331 1
Q ss_pred cCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hccCCC-cHHHHHHHHHHHHhcCChhHHHHHHH----HHH
Q 010292 289 AGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVK----HHVDGK-EFPLIRAMICAYSKCSVTDRIKKIEA----LMR 358 (513)
Q Consensus 289 ~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~----~~~ 358 (513)
+.|-. .-...|..|-+.|.-.|+++.|+..++.-. +.|-.. ....+..+-+++.-.|+++.|.+-++ +..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 11111 123456666666677788888887776422 222211 23456677777777888877766543 233
Q ss_pred hCCCCCcccch-HHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292 359 LIPEKEYRPWL-NVLLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 359 ~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 430 (513)
++..+.+.... | .|...|.-...+++|+.++.+-+. .+...-....+-+|..+|...|..++|+.+.+.-.
T Consensus 267 elg~r~vEAQscY-SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCY-SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44444333221 3 477777777788888887765332 11222233445578888888888888888776543
No 204
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.039 Score=48.95 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=64.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (513)
-+.+.+++++|+..|.+..+- .+-|.+-|..-..+|++.|.++.|++-.+..+.... --..+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence 345667777777777777752 233455566666777777777777776666655321 12456777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292 279 KVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
+|++.|++.++ +.|+-.+|-.=++
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 77777777766 5676666554443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.53 E-value=0.055 Score=48.64 Aligned_cols=97 Identities=13% Similarity=-0.008 Sum_probs=61.1
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~ 263 (513)
...|+..+..+.+.|++++|+..|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.-.. .....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 345666665556678888888888888765 3543 35666777777777777777777777653211 11233
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+-.+...+...|+.++|.++|++..+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344555566677777777766665
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.087 Score=48.90 Aligned_cols=158 Identities=9% Similarity=0.013 Sum_probs=96.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH------
Q 010292 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR--VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS------ 411 (513)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~------ 411 (513)
++.-.|+.+.+...--...++...+... ..+. ++--.++.+.|...|.+.+..+....+..+......
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~a----l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEA----LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHH----HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 4555677777766654444554444322 2332 233457788888888887775544333332222222
Q ss_pred ----HHHhcCcHHHHHHHHHHHHhc---CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 412 ----SYFRCNAVDKLANFVKRAESA---GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 412 ----~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
-..+.|++..|.+.+.+.+.. +.+++...|.-...+..+.|+.++|+.--++....+ .-=...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 334678999999999987643 345566667666777788999999998888777543 101112222234455
Q ss_pred hcCCHhHHHHHHHHHHHC
Q 010292 485 TCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 485 ~~g~~~~A~~~~~~m~~~ 502 (513)
-.++|++|.+-+++..+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 677888888888876554
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.44 E-value=0.82 Score=43.02 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.3
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
..-|..+.++.++.-.|++++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 33455566777888888888888888887764
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.18 Score=45.04 Aligned_cols=114 Identities=17% Similarity=0.028 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCCHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
.|-|...|-.|-.+|.+.|+++.|..-|.+..+...+|...+..+..++.... ...++..+|+++.+. -+-|+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 45599999999999999999999999999999987788888888887766543 367899999999964 3455667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 7777888999999999999999999864 33444555554
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=1.2 Score=44.92 Aligned_cols=326 Identities=9% Similarity=0.026 Sum_probs=183.0
Q ss_pred cCCCCCCCCHHHHHHH-----HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010292 147 QAGYGTPMTKEEYTKG-----IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221 (513)
Q Consensus 147 ~~~~g~~~~~~~~~~l-----l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 221 (513)
....|++.+..-|..+ |.-+...+.+..|.++-..+...-..+..+|.....-+.+..+.. -.++++.+.++.+
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhc
Confidence 3458899988888754 666778889999999888775432223466777777777664321 1233333333322
Q ss_pred C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-----
Q 010292 222 I-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL----SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP----- 291 (513)
Q Consensus 222 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----- 291 (513)
. --...+|..+..-.-.+|+.+.|..+++.=...+- -.+..-+...+.-+.+.|+.+-...++-.|.++-
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 12345777777777788999999888764332211 0122335556666777888887777776665421
Q ss_pred -----CCC-CHHHHHHHHH--------HHHhcCChHHHHHHHH--HHH----hccCCCcHHHHHHHHHHHHhcCChhH--
Q 010292 292 -----VMP-DTNTYLLLLR--------GYAHSGNLPRMEKIYE--LVK----HHVDGKEFPLIRAMICAYSKCSVTDR-- 349 (513)
Q Consensus 292 -----~~p-~~~t~~~ll~--------~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~li~~~~~~g~~~~-- 349 (513)
..| ....|.-+++ .+.+.++-.++...|. ... ..+..|+.. ...+.+.+......
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHH
Confidence 011 1122222221 1111222222222111 100 012223322 23333443332111
Q ss_pred -----HHHHHHHHHhCCCC-C--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH
Q 010292 350 -----IKKIEALMRLIPEK-E--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421 (513)
Q Consensus 350 -----a~~~~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 421 (513)
-.+.+++.+.+... + .....-.--+.-+...|+..+|.++-.+ ...++...|-.=+.+++..+++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~-----FkipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD-----FKIPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh-----cCCcchhhHHHHHHHHHhhhhHHH
Confidence 11122222222211 1 1111111245666778888998887554 344566667667888999999998
Q ss_pred HHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010292 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496 (513)
Q Consensus 422 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (513)
-+++-+.++ .+.-|..++.+|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.++-
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 777766543 245677889999999999999999876542 115678888889988887654
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.40 E-value=0.061 Score=42.11 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCCcHHHHHHHHH
Q 010292 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIRAMIC 339 (513)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 339 (513)
.|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|++
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444444555555444555555544444333 233334444444444
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.40 E-value=0.88 Score=42.82 Aligned_cols=168 Identities=13% Similarity=0.046 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc---CC-CHhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCCCHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKH---LK-TIGTYNALLGAYMY---NGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
+..+...++-.|-...+++..+++.+.+.... +. +...-....-++-+ .|+.++|++++..+... .-.++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChH
Confidence 44455566667888999999999999988752 11 33333344455666 78999999999885543 4567888
Q ss_pred HHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HH---HHHHHH---H-HHHcC
Q 010292 228 TYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WG---KVEEIY---Q-MMKAG 290 (513)
Q Consensus 228 ~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~a~~~~---~-~m~~~ 290 (513)
+|..+...|-.. ..++.|+..|.+--+. .||.++=-.+...+...|. .+ +..++- . ...++
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 888877776321 1345566655554432 2333221111111112221 11 122222 1 11122
Q ss_pred CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 291 PV---MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 291 g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
|. ..|-.-+.+++.++.-.|+.+.|.+..+.|.+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 21 234455555666666666666666666666654
No 212
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.33 E-value=0.33 Score=39.05 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=22.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 203 (513)
.++..+.+.+.......+++.+...+..+...+|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 4444444455555555555555554433455555555555544
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.30 E-value=0.019 Score=40.10 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 412 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
.|.+.+++++|.++++.+...+.. +...+......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555555555555555544322 3444444555555555555555555555543
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=0.29 Score=48.23 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=49.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh-----------HHHHHH
Q 010292 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL-----------YHSKMV 446 (513)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-----------~~~li~ 446 (513)
.+...+..|-++|.+|-. ..++++.....+++++|..+-+..-+. .||+.. |.-.-.
T Consensus 758 k~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred hhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHH
Confidence 344556667777766532 234666677778888888777654321 222211 333446
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 010292 447 MYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
+|.+.|+-.+|..+++++....
T Consensus 826 AfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhhh
Confidence 7888888889998888876643
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.15 E-value=0.051 Score=47.69 Aligned_cols=116 Identities=9% Similarity=0.163 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010292 153 PMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
.-|..+|-..+..+.. .+.++-....+..|.+.|+. |..+|+.||..+-+..-.-. .+|+..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~---------- 131 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV---------- 131 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH----------
Confidence 3488888888888753 46778888888899999985 99999998887755432211 112111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHH
Q 010292 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW-GKVEEIYQMMK 288 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 288 (513)
.+ -|- .+-+-++.++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-
T Consensus 132 -----F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 -----FL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -----Hh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11 111 12244778888888888888888888888888776643 34444444443
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.12 E-value=0.8 Score=39.62 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKL 422 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a 422 (513)
.+...|.+.|.+..|..-++.+++.-... ........++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 36777888888888888888888753222 2223455667777777776644
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.08 E-value=0.39 Score=37.16 Aligned_cols=121 Identities=10% Similarity=0.231 Sum_probs=71.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C----------------CcccHhhHH
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-G----------------WRLCRSLYH 442 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----------------~~~~~~~~~ 442 (513)
.|.+++..++..+..... +..-+|-+|--....-+-+-..+.++.+-+. . ...+...+.
T Consensus 15 dG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD 90 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVD 90 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHH
T ss_pred hchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHH
Confidence 466666677776665532 1222444443333333333344444433110 0 012334456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
..++.+..+|+-+.-.++++++...+ .+++...-.+..+|.+-|+..++.+++.+.-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 67788889999999999999987644 788888999999999999999999999999999974
No 218
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.08 E-value=1.1 Score=41.04 Aligned_cols=130 Identities=14% Similarity=0.235 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccC
Q 010292 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGR--LL----LVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~ 276 (513)
+++.+.+++.|.+. |+.-+..+|-+....... .. ....|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 44556667777764 677776666553333322 22 24567777777776542 3455666666554 2223
Q ss_pred H----HHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcC-C--hHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292 277 W----GKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSG-N--LPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 277 ~----~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~--~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
. +.++++|+.+...|+..+ ..-+.+-+-+++... . ...+.++++.+.+.|++.....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2 456677777777776654 222222232332222 1 335677777777777777666655443
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.093 Score=46.24 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNT 231 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~ 231 (513)
...|+.-+.. .+.|++..|...|....+..+. ....+-.|...+...|++++|..+|..+.++++-.|-. ..+--
T Consensus 142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4467777766 4667799999999999987764 46778889999999999999999999999875544444 67888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
|..+..+.|+.+.|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888889999999999999999875
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.03 E-value=0.36 Score=47.05 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
....+.++..+-+.|..+.|+++-.+-..+ .....+.|+++.|.++-++. .+...|..|..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~ 355 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGD 355 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHH
Confidence 334566666666666666666655443322 23344566666666554332 24556666666
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
...+.|+++-|++.|++... |..|+-.|.-.|+.+.-.++.+.....
T Consensus 356 ~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 356 EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66666666666666665443 445555555566655555555554444
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.93 E-value=0.78 Score=37.94 Aligned_cols=97 Identities=10% Similarity=-0.009 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCCcHHHHH
Q 010292 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIR 335 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~ 335 (513)
|++..--.|..++.+.|+..+|...|++....-+--|......+.++....+++..|...++.+.+. +-.||.. -
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--L 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--H
Confidence 4555555555555566666666666665555433445555555555555556666665555555442 1222222 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 010292 336 AMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~~ 357 (513)
.+...|...|...+|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHH
Confidence 3334444455555555554443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.93 E-value=0.021 Score=40.49 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc-cc-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 404 RIMRCIVSSYFRCNAVDKLANFVKRAESA----GWR-LC-RSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
.+|+.+...|...|++++|++.+++..+. |-. |+ ..+++.+...|...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555666666666555554321 111 11 333444555555555555555555543
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.93 E-value=1.1 Score=39.42 Aligned_cols=183 Identities=17% Similarity=0.149 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
...|+..+.- .+.|++++|.+.|+.+..+.+- ...+.-.++.++-+.+++++|+..+++..+..+-.||. -|..-
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y 112 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY 112 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence 3445544443 5778899999999988876652 45666677778888899999999999888776656665 34444
Q ss_pred HHHHHhc-------CChhHHH---HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292 233 ISVFGRL-------LLVDHME---AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 233 i~~~~~~-------g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
|.+++.- .|...+. .-|++++++ -||. .-...|..-....... =..-=..+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH----HHHHHHHH
Confidence 4444322 2223333 333333332 1221 1111111111111100 00000234
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010292 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLI 360 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 360 (513)
.+-|.+.|.+..|..-++.|.+. .+.+. ...-.+..+|.+.|-.+.|.++.+++..-
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 45566777777777777777665 22222 23344555666666666666666555543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.90 E-value=0.031 Score=39.63 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPD-TNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555666666666655554421 11 122 4455566666666666666666665543
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.87 E-value=1.1 Score=42.48 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHH
Q 010292 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLR 304 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~ 304 (513)
.+|...|+...+...++.|..+|-+..+.| +.+++..++++|..++. |+...|.++|+.=... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888788888889999999988887 67888888998887765 6788888888764332 2454433 34566
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010292 305 GYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 362 (513)
-+...++-+.|..+|+..++. +..+ ...|..+|+--...|++..+....+.|.+..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 667788888888888865443 1112 45788888888888888777666666655433
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.85 E-value=0.15 Score=48.53 Aligned_cols=68 Identities=15% Similarity=0.004 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
.+.+...++.+..+|.+.|++++|+..|++..+.++.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455788888999999999999999999999888776555 45999999999999999999999999863
No 227
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.84 E-value=0.054 Score=48.43 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVTYNTLI 233 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~~~~li 233 (513)
++..+++.+...|+++.+.+.++++....+.+...|..+|.+|.+.|+...|+..|+.+.+ ..|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455566666666666666666666665555666666666666666666666666666543 235555555544444
Q ss_pred HH
Q 010292 234 SV 235 (513)
Q Consensus 234 ~~ 235 (513)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.84 E-value=1.1 Score=38.80 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
..+.+.|++++|.+.|+.+....- .--....-.+..++.+.|+++.|...++...+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566777777777777765321 111344556667777777777777777776654
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.76 E-value=0.42 Score=38.87 Aligned_cols=91 Identities=7% Similarity=-0.121 Sum_probs=64.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 452 (513)
...-+-..|++++|..+|.-+..-+ +.+..-+..|..+|-..+++++|...|......+. -|+..+-....+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 3444556788999999988777633 33455577788888888889999888887654443 23333445667788888
Q ss_pred CHHHHHHHHHHHHh
Q 010292 453 RVEEMESVLKEMEN 466 (513)
Q Consensus 453 ~~~~A~~~~~~m~~ 466 (513)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999988888876
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=95.64 E-value=0.97 Score=36.85 Aligned_cols=90 Identities=9% Similarity=0.031 Sum_probs=70.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
..-+...|++++|..+|.-+.-.+. -+...+..|..++-..++++.|...+...-.+...+..|.. .+..+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHHHhCC
Confidence 3344578999999999988776533 35566777888888888888888888877777777777764 37889999999
Q ss_pred HHHHHHHHHHHHh
Q 010292 383 LEEMEKSINDAFE 395 (513)
Q Consensus 383 ~~~a~~~~~~~~~ 395 (513)
.+.|...|...+.
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887776
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.60 E-value=0.37 Score=46.05 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=58.3
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 37899999999999999999999999998864 6774 35899999999999999999999999874
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.54 E-value=2.1 Score=39.95 Aligned_cols=283 Identities=11% Similarity=0.037 Sum_probs=145.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHccCHHH
Q 010292 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG--RLLLVDHMEAAFQEIKDSNLSPNVFT--YNYLIAGYMTAWMWGK 279 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~ 279 (513)
|+-..|.++-.+-.+. +.-|......|+.+-. -.|++++|.+-|+-|... |.... ...|.-.--+.|+.+.
T Consensus 98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 4445555444443321 2334444444443322 345566666666666541 22211 1122222234555555
Q ss_pred HHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcHH--HHHHHHHHHHhc---CChhHHHH
Q 010292 280 VEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEFP--LIRAMICAYSKC---SVTDRIKK 352 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~~~~~---g~~~~a~~ 352 (513)
|.++-+..-.. -|. ...+...+...|..|+++.|+++++.-... -+.++.. .-..|+.+-... .+...+..
T Consensus 173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 55555554332 222 345555666666666666666666554432 1222221 111122111100 01111111
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Q 010292 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES- 431 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 431 (513)
.-..-.+ ..++..|-. ..-..++.+.|+..++-.+++.+.+....|.- + .+..+.+.|+. +..-+++.++
T Consensus 251 ~A~~a~K-L~pdlvPaa-v~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---a--~lY~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 251 DALEANK-LAPDLVPAA-VVAARALFRDGNLRKGSKILETAWKAEPHPDI---A--LLYVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHhh-cCCccchHH-HHHHHHHHhccchhhhhhHHHHHHhcCCChHH---H--HHHHHhcCCCc--HHHHHHHHHHH
Confidence 1111111 234555542 24567889999999999999999986555432 2 33345555653 3333333321
Q ss_pred cCCcc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCC
Q 010292 432 AGWRL-CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 432 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 504 (513)
...+| +.+.--.+..+-...|++..|..--+.... ..|....|..|.+.-... |+-.++..++-+..+.--
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 11233 345555667777788888888776666654 468888898888887655 999999998887766533
No 233
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.52 E-value=1.2 Score=36.97 Aligned_cols=130 Identities=9% Similarity=0.016 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
+-|++.--..|..++.+.|+..+|...|++....-+-.|....-.+.++....+++..+...++.+-+.....-.+...-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45777777889999999999999999999988866666777777777888877877776666666655555444444333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 424 (513)
.+...|...|+++.|+.-|+.....-+.+.-...|..+ +.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcchhHHHH
Confidence 56667777777777777777766644433323233333 344555554443
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=1.5 Score=38.10 Aligned_cols=205 Identities=9% Similarity=0.087 Sum_probs=99.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
|.---.+|....++++|...+.+..+. .+-+...| -..+.++.|.-+.+++.+. +--+..|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 344445566666777766655554421 11111111 1122344444455554442 1123345566667777
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcH
Q 010292 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAV 419 (513)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~ 419 (513)
+|..+-|-.+++...++ ..+.+.++|+++|++...- +...--...+..+-+.+.+...+
T Consensus 104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77776655554433322 2234455555555543321 11111122345555566666666
Q ss_pred HHHHHHHHHHHh----cCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHhH
Q 010292 420 DKLANFVKRAES----AGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENY---KIDCSKKTFWIMYYAYATCGQRRK 491 (513)
Q Consensus 420 ~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~ 491 (513)
++|-..+.+-.. ..--++ -..|-..|-.|.-..++..|.+.+++--+. .-.-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 665544433211 111111 122444555566677888888888774332 22335667777777774 466666
Q ss_pred HHHHH
Q 010292 492 VNQVL 496 (513)
Q Consensus 492 A~~~~ 496 (513)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65554
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.49 E-value=1 Score=36.14 Aligned_cols=127 Identities=11% Similarity=0.099 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
....++..+...+..+....+++.+... + ..+...+|.++..|++.+ .+.....++. ..+......++..|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 3456777777778888888888888865 4 366778888888888764 3444444442 12334455577778
Q ss_pred HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
.+.+.++++.-++.++.. |...+..+... ++++.|.+++... .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 888888888888877643 22233333333 6777777766541 24456666665554
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=1.6 Score=39.15 Aligned_cols=46 Identities=4% Similarity=-0.047 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 417 (513)
.+...+...|+.++|.+.+-.++++...-.+...-..|+..+.-.|
T Consensus 241 ~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 241 ALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3566666777777777766666655433333333444555444444
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.33 E-value=1 Score=35.01 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 434 (513)
.+..+...|+-+.-.+++.++.+.+.. ++..+-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444445555555555555554432111 223344455555555555555555555544443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=2.1 Score=38.44 Aligned_cols=142 Identities=13% Similarity=0.042 Sum_probs=88.0
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
......|++.+|..+|+........+...--.+..+|...|+.+.|..++..+..+. -.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 345678888888888888887766677777788888888999999999988887541 1111122223344455555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcC
Q 010292 244 HMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g 310 (513)
+...+-.+.-.. | |...--.+-..+...|+.++|.+.+-.+... |.. |...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 444444444432 4 5555556667777777777777765555442 333 4445555555555555
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.12 E-value=0.94 Score=35.03 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=68.3
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCh
Q 010292 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--VTYNTLISVFGRLLLV 242 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~ 242 (513)
+++..|+++.|++.|.+....-+.+...||.-.+++--.|+.++|++=+++..+..|-+--. ..|.--...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45778999999999998887655688899999999999999999999888887765533111 2333344556677888
Q ss_pred hHHHHHHHHHHHCC
Q 010292 243 DHMEAAFQEIKDSN 256 (513)
Q Consensus 243 ~~A~~~~~~m~~~g 256 (513)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888877776655
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.03 E-value=2.6 Score=40.81 Aligned_cols=63 Identities=5% Similarity=-0.048 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.+-..+-.++-+.|+.++|.+.|++|.+..-. -+......|+.++...+.+.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344555666777778888877777653211 1234566777777777777777777776544
No 241
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=1.8 Score=35.45 Aligned_cols=134 Identities=10% Similarity=0.083 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC--HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT--IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNT 231 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~ 231 (513)
+...|..-++. ++.+..++|+.-|..+.+.|..+ +-.--.+.......|+...|...|+++-.. .-.|-.. -..-
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHH
Confidence 33445444443 56667777777777777776542 222222334456677777777777777654 2222221 0011
Q ss_pred H--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 232 L--ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 232 l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
| .-.+...|.++++..-.+-+-..|-..-...-..|--+-.+.|++.+|.++|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 1123455666666666555544333333344445555555666666666666666553
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.84 E-value=3.1 Score=38.06 Aligned_cols=166 Identities=12% Similarity=0.120 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010292 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410 (513)
Q Consensus 332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 410 (513)
.+...++.+|...+..+...++.+.++.+.... ..+..+..-+..+.+.++.+++.+++.+|+..-..+ ...+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~--e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS--ESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc--cchHHHHH
Confidence 467788888988888887777777666653322 222223345677777889999999999999864422 12244445
Q ss_pred HHHHh--cCcHHHHHHHHHHHHhcCCcccHh-hHHH-HHH---HHHhcC------CHHHHHHHHHHHHh-CCCCCCHHHH
Q 010292 411 SSYFR--CNAVDKLANFVKRAESAGWRLCRS-LYHS-KMV---MYASQR------RVEEMESVLKEMEN-YKIDCSKKTF 476 (513)
Q Consensus 411 ~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~-~~~~-li~---~~~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~ 476 (513)
..+.. ......+...+..+....+.|... .... ++. ...+.+ +++...+++....+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44422 123345666666665444444443 1111 111 111221 24555555554332 2223333332
Q ss_pred H---HHH----HHHHhcCCHhHHHHHHHHH
Q 010292 477 W---IMY----YAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 477 ~---~li----~~~~~~g~~~~A~~~~~~m 499 (513)
. +++ ..+.++++|+.|.++|+--
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 333 3456799999999999854
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.82 E-value=3.2 Score=38.15 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhccCC-CHhHHHHHHHHHHH--c----CChHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC-
Q 010292 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMY--N----GLSDKCQSLFRDLKKEANI--SPSIVTYNTLISVFGRLLL- 241 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~- 241 (513)
+++..++++.|.+.|+. +..+|-+....... . -...+|.++|+.|++.... .++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677889999999986 65666554333333 2 2367899999999986321 2445566666554 3333
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292 242 ---VDHMEAAFQEIKDSNLSPNVF--TYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 242 ---~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
.+.++.+|+.+.+.|+..+.. ....++..+-.... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 356788899998888766443 33333333222222 457889999999999998877766553
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.66 E-value=0.11 Score=31.88 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=21.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
++..+...|.+.|++++|.++|++..+..+.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344555555566666666666666555544455555444
No 245
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.50 E-value=4.7 Score=38.55 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCC----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 010292 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDG----KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 375 (513)
+..+.++...|++.++..+++++...-.+ .+..+|+.++-.++++ .+-.+.+....++.+..|. |+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYe-mil 202 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYE-MIL 202 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHH-HHH
Confidence 45566677788888888887777664333 6777777777666653 1222233334445555453 555
Q ss_pred HHHhc
Q 010292 376 VYAKE 380 (513)
Q Consensus 376 ~~~~~ 380 (513)
.|.+.
T Consensus 203 fY~kk 207 (549)
T PF07079_consen 203 FYLKK 207 (549)
T ss_pred HHHHH
Confidence 55443
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.49 E-value=4.6 Score=38.49 Aligned_cols=125 Identities=11% Similarity=0.051 Sum_probs=89.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhH-HHHHHHHHhc
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY-HSKMVMYASQ 451 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~ 451 (513)
.+..-.+..-++.|..+|-+..+.+...+++.++++++..++ .|+...|..+|+.-...- ||.-.| +-.+..+...
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHh
Confidence 555556667789999999999888866677888999988655 578888899988543222 333333 5567777888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 452 RRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
++-+.|..+|+...++ +..+ ...|..+|.--..-|+...|..+-++|.+
T Consensus 480 nde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 480 NDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred CcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 9999999999854432 1222 45788899888888988777776666643
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.42 E-value=0.73 Score=44.96 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
....+.++..+-+.|..+.|+++-..-. .-.....+.|+++.|.++.++. .+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 4557888888999999999988766532 2235567789998888765433 367799999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
..+.|+++-|++.|++..+ |..|+-.|.-.|+.+...++.+.....| -++....++.-.|++++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 9999999999999988764 6777778888888888888887777766 256666667777888887
Q ss_pred HHHHHH
Q 010292 316 EKIYEL 321 (513)
Q Consensus 316 ~~~~~~ 321 (513)
.+++..
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=4.7 Score=41.57 Aligned_cols=175 Identities=7% Similarity=0.041 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI----AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
-.-|+..++...++.|+.+-+. .+ .|..+...++ +-+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3445555556666666555432 22 2333333333 3344677888877776554431 222 233444
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010292 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 385 (513)
|....++..-..+++.+.+.|.. +...-+.|+.+|.+.++.++..+. .+... .+..-......+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef---I~~~~-~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF---ISKCD-KGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH---HhcCC-CcceeeeHHHHHHHHHHhChHHH
Confidence 55555556666667777777664 334446778888888766643333 33222 22222112246677777777777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 429 (513)
|..+-..... .......+ +...+++++|++++..+
T Consensus 482 a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7765433221 12223333 34567788888877754
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.21 E-value=6.5 Score=39.06 Aligned_cols=176 Identities=14% Similarity=0.173 Sum_probs=116.1
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc-CCC------HhHHHHHHHHHHH----cCCh
Q 010292 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKT------IGTYNALLGAYMY----NGLS 206 (513)
Q Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~------~~~~~~li~~~~~----~g~~ 206 (513)
.-+|..+... +|| .+..+++..+=.|+-+.+++.+.+..+.+ +.. .-.|+.++..++. ....
T Consensus 177 ~G~f~L~lSl----LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 177 FGLFNLVLSL----LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHh----CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3455555443 333 45678888888899999999998876633 222 2345555555544 4567
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccCHHHHHH
Q 010292 207 DKCQSLFRDLKKEANISPSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWMWGKVEE 282 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~ 282 (513)
+.|.++++.+.++ -|+...|...- +.+...|++++|++.|++...... ......+--+.-++.-.++|++|.+
T Consensus 250 ~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 250 EEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 8999999999976 57876665433 556778999999999997653110 1123344455666778889999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHHh
Q 010292 283 IYQMMKAGPVMPDTNTYLLLLRGY-AHSGNL-------PRMEKIYELVKH 324 (513)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 324 (513)
.|..+.+.. .-+..+|.-+..+| ...|+. ++|.++|.++..
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999998753 22444555444433 446666 777778776543
No 250
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.20 E-value=4 Score=36.68 Aligned_cols=116 Identities=8% Similarity=-0.041 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhc--cCCCHhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010292 171 NVDLAADLFAEAANK--HLKTIGTYNALLGAYMYN-G-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~--~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 246 (513)
.+.+|+.+|+..... =+.|..+...+++..... + ....--++.+-+....|-.++..+...+|..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 344555555522211 112555556666555541 1 222233333334433344566666666666666666666666
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292 247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
++++..... +..-|...|..+|......|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 666655543 4445666666666666666666555555443
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=7.9 Score=40.03 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHh----cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 155 TKEEYTKGIKFA----GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 155 ~~~~~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
|......+...| .+.|++++|...|-+-... -+ =..+|.-|....++.+-..+++.+.+. |+ .+...-.
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le---~s~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhtt 435 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LE---PSEVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTT 435 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CC---hHHHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHH
Confidence 444444444443 3567777776666544321 11 123455555556666666666666654 54 3444556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
.|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++|..+-..... .......++ -..+
T Consensus 436 lLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ 504 (933)
T KOG2114|consen 436 LLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLH 504 (933)
T ss_pred HHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhc
Confidence 67777777777777666655543 2221 00123344555555555555555444332 222333333 3456
Q ss_pred ChHHHHHHHHHH
Q 010292 311 NLPRMEKIYELV 322 (513)
Q Consensus 311 ~~~~a~~~~~~~ 322 (513)
++++|.+++..+
T Consensus 505 ny~eAl~yi~sl 516 (933)
T KOG2114|consen 505 NYEEALRYISSL 516 (933)
T ss_pred CHHHHHHHHhcC
Confidence 777777776543
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.14 E-value=1.7 Score=34.55 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=51.9
Q ss_pred cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010292 117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194 (513)
Q Consensus 117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 194 (513)
.|....|......+ .++++.|.+.|+.+..+--.| +....+.-.++.+|.+.+++++|...+++..+.++. ....|-
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 34455666666666 346777777777776653222 234555666777777777777777777777776664 334455
Q ss_pred HHHHHHHH
Q 010292 195 ALLGAYMY 202 (513)
Q Consensus 195 ~li~~~~~ 202 (513)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 55555444
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=4.5 Score=36.98 Aligned_cols=163 Identities=9% Similarity=-0.033 Sum_probs=116.5
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCC
Q 010292 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLL 241 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~ 241 (513)
+-..|+..+|-..++++.+..+.|..+++..=.+|.-.|+.+.-...++++...+ .+|. .......-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456888888889999998766699999999999999999999999999988642 3444 333445556678899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010292 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
+++|++.-++..+.+. -|...-.++.+.+-..|++.++.+...+-... +--.-.+-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999988887553 36667777778888899999999877664331 1111123344444455667899999999
Q ss_pred HHH-HHhccCCCcH
Q 010292 319 YEL-VKHHVDGKEF 331 (513)
Q Consensus 319 ~~~-~~~~~~~~~~ 331 (513)
|+. |.+.-...|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 985 4443333344
No 254
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.07 E-value=8.4 Score=39.87 Aligned_cols=185 Identities=15% Similarity=0.111 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCCCCCCC--CHHHHHHHHHHhc-ccCCHHHHHHHHHHHHhccC-C---C--HhHHHHHHHHHHHcCChH
Q 010292 137 ALEVLNWRRRQAGYGTPM--TKEEYTKGIKFAG-RINNVDLAADLFAEAANKHL-K---T--IGTYNALLGAYMYNGLSD 207 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~-~---~--~~~~~~li~~~~~~g~~~ 207 (513)
|+..++.+.+. ...+| +..++-.+...+. ...+++.|+..+++.....- + + -..-..++..+.+.+...
T Consensus 40 ai~CL~~~~~~--~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 40 AIKCLEAVLKQ--FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44555555432 22343 3344455566665 56789999998886643221 1 1 123345566677766655
Q ss_pred HHHHHHHHHHHhCCC---CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--HccCHH
Q 010292 208 KCQSLFRDLKKEANI---SPSIVTYNTL-ISVFGRLLLVDHMEAAFQEIKDSN---LSPNVFTYNYLIAGYM--TAWMWG 278 (513)
Q Consensus 208 ~A~~~~~~m~~~~g~---~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~ 278 (513)
|....++..+...- .+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887654211 1112233333 233333478888988888877532 2344555555555544 345566
Q ss_pred HHHHHHHHHHcCC---------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 010292 279 KVEEIYQMMKAGP---------VMPDTNTYLLLLRGYA--HSGNLPRMEKIYELVKH 324 (513)
Q Consensus 279 ~a~~~~~~m~~~g---------~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~~~ 324 (513)
++.+.++++.... -.|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777776663321 1345667777776665 46666677666665543
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.04 E-value=2.5 Score=34.35 Aligned_cols=52 Identities=17% Similarity=0.001 Sum_probs=26.4
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.++.+++..+++.+.-..+.....-..-...+.+.|++.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455666666666665554443222222222334555666666666666554
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.96 E-value=4.9 Score=37.20 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=25.4
Q ss_pred cccCCHHHHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCChHHHHHH
Q 010292 167 GRINNVDLAADLFAEAANKHL--K-TIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
....+.++|+..|.+...+-- . ...+|..+..+.++.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 345566666666665554211 1 234566666666666666655543
No 257
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=8.8 Score=39.16 Aligned_cols=304 Identities=11% Similarity=0.052 Sum_probs=165.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH--HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV--DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 209 (513)
+.+..|.++-.|+...... ...+|.....-+.+..+. +++.+..++=.........+|..+..-...+|+.+.|
T Consensus 451 ~~Y~vaIQva~~l~~p~~~----~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA 526 (829)
T KOG2280|consen 451 HLYSVAIQVAKLLNLPESQ----GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELA 526 (829)
T ss_pred chhHHHHHHHHHhCCcccc----ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHH
Confidence 4556677777776432211 145666666666655322 2233333322221123567888888888899999999
Q ss_pred HHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCCHHHHHHHHH-----
Q 010292 210 QSLFRDLKKEANIS----PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-----------LSPNVFTYNYLIA----- 269 (513)
Q Consensus 210 ~~~~~~m~~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~li~----- 269 (513)
..+++.=... +.+ .+..-+...+.-+.+.|+.+....++-+|.+.- .+-....|.-++.
T Consensus 527 ~kLle~E~~~-~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~ 605 (829)
T KOG2280|consen 527 RKLLELEPRS-GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRA 605 (829)
T ss_pred HHHHhcCCCc-cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchh
Confidence 9887643221 110 122345566777788888888887777766431 0111122222222
Q ss_pred ---HHHHccCHHHHHHHH--HHHH----cCCCCCCHHHHHHHHHHHHhcCChHHHH----------HHHHHHHh-ccCCC
Q 010292 270 ---GYMTAWMWGKVEEIY--QMMK----AGPVMPDTNTYLLLLRGYAHSGNLPRME----------KIYELVKH-HVDGK 329 (513)
Q Consensus 270 ---~~~~~g~~~~a~~~~--~~m~----~~g~~p~~~t~~~ll~~~~~~g~~~~a~----------~~~~~~~~-~~~~~ 329 (513)
.+.+.++-.++..-| +... ..|..|+ .....++|.+.....-.. ++.+.+.. .|...
T Consensus 606 ~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f 682 (829)
T KOG2280|consen 606 TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF 682 (829)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 011111111221111 1100 1122333 233344444444322111 12222222 23333
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010292 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI 409 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 409 (513)
...+.+..+.-+...|+..+|.++...| .-++-.-|- .-+.+++..+++++-+++-+.+.. | . -|.-+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~w--Lk~~aLa~~~kweeLekfAkskks----P--I-Gy~PF 750 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWW--LKLTALADIKKWEELEKFAKSKKS----P--I-GYLPF 750 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHH--HHHHHHHhhhhHHHHHHHHhccCC----C--C-CchhH
Confidence 3344566666777788777666665444 333333332 468889999999998876544322 2 2 27778
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
+.+|.+.|+.++|.+++.+... . .-.+.+|.+.|++.+|.++--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHHh
Confidence 8999999999999999886431 1 14677899999999998875543
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.79 E-value=7.8 Score=38.49 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHHHhcCcHHHHHHHHHHHHhc--CCc-ccHhhHHHHHHHHHhcCCHH
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKRAESA--GWR-LCRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~--~~~-~~~~~~~~li~~~~~~g~~~ 455 (513)
....+.|.+++..+..+- |. ...|.. -.+.+...|++++|.+.+++.... .++ .....+--+.-.+.-..+|+
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 346777777777777642 22 222322 234555677888888888865421 111 11222333445566788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH-------hHHHHHHHHHH
Q 010292 456 EMESVLKEMENYKIDCSKKTFWIMYY-AYATCGQR-------RKVNQVLGLMC 500 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~ 500 (513)
+|.+.|..+.+.+ .-+..+|..+.- ++...|+. ++|.++|.+..
T Consensus 323 ~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8888888888765 334445553333 33456666 77777777653
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.66 E-value=3.8 Score=37.88 Aligned_cols=128 Identities=10% Similarity=0.058 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccHhhHH-
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCRSLYH- 442 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~- 442 (513)
.|..+....+.++++++.|+...+-. ...-...++-+|-..|.+..++++|.-+..+..+ .++.--..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 46666667778888888887766522 2222344677788888888899988877776532 22221111122
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 443 ----SKMVMYASQRRVEEMESVLKEMEN----YKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 443 ----~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.+..++-..|+.-+|.+.-+|..+ .|-.+ -......+.+.|...|+.|.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 233455567777777776665443 23222 2334446778888889988887766653
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.65 E-value=5.6 Score=36.39 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=11.4
Q ss_pred cccCCHHHHHHHHHHHHhc
Q 010292 167 GRINNVDLAADLFAEAANK 185 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~ 185 (513)
.+.|+++.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 3556666666666665543
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=1.9 Score=40.44 Aligned_cols=90 Identities=10% Similarity=-0.013 Sum_probs=45.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHhc-c----CC----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292 163 IKFAGRINNVDLAADLFAEAANK-H----LK----------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~-~----~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
-+.|.+.|++..|...|+..... + .+ -..+++.|..+|.+.+++.+|++.-+..... -++|+-
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchh
Confidence 34567888888888888875431 0 00 0223444444445555555555555444432 133333
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292 228 TYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..---..++...|+++.|+..|+++.+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 444444444444455555555554444
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.56 E-value=1 Score=40.58 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010292 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL 301 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 301 (513)
.++..++..+...|+.+.+...++++..... -|...|..+|.+|.+.|+...|+..|+.+.+ -|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3566677778888888888888888887654 3778888888888888888888888887765 477777766655
Q ss_pred HHHH
Q 010292 302 LLRG 305 (513)
Q Consensus 302 ll~~ 305 (513)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=2.5 Score=39.68 Aligned_cols=92 Identities=3% Similarity=-0.072 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010292 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413 (513)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 413 (513)
+..+.-+|.+.+++..|.+.-...-.+.+.+.... | --..+|...|+++.|...|+++++ ..|.+..+-+.++..-
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL-y-RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL-Y-RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH-H-HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 33444445555555544444444444444444443 2 244555555566666666655555 3333443334444333
Q ss_pred HhcCcHHH-HHHHHHHH
Q 010292 414 FRCNAVDK-LANFVKRA 429 (513)
Q Consensus 414 ~~~~~~~~-a~~~~~~m 429 (513)
.+...... ..++|..|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333222 23444444
No 264
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.43 E-value=11 Score=39.00 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=26.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 203 (513)
.+|-.|.|+|++++|.++..+....-......+-..+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3556667888888888888554443223455666667776664
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.19 E-value=5.7 Score=35.06 Aligned_cols=184 Identities=11% Similarity=0.049 Sum_probs=118.9
Q ss_pred cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010292 117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194 (513)
Q Consensus 117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 194 (513)
.|-...|...+..+ .++++.|...|+.+..+.- +-+....+.-.++.++-+.+++++|+..+++.....+. ....|-
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 46677899999988 5699999999999987643 34556777788888999999999999999999987764 445566
Q ss_pred HHHHHHHHc-------CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-
Q 010292 195 ALLGAYMYN-------GLS---DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT- 263 (513)
Q Consensus 195 ~li~~~~~~-------g~~---~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~- 263 (513)
.-|.+++.- ++. .+|+.-|+++.++ -||.. -..+|..-...+.. ...
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~d------~LA~ 168 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLND------ALAG 168 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHHH------HHHH
Confidence 666666542 233 3444555555544 24431 11222222222211 001
Q ss_pred H-HHHHHHHHHccCHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 264 Y-NYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 264 ~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
+ -.+...|.+.|.+..|..-+++|.+. .+- .....-.+..+|...|-.++|...-+-+..
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 1 12446677888888888888888775 211 234455667778888888877776655554
No 266
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=8 Score=36.56 Aligned_cols=177 Identities=11% Similarity=-0.009 Sum_probs=100.0
Q ss_pred CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292 224 PSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM--TAWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 224 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
|...+|-.+- .++...|+.++|..+--..++.. .+..+...+++.+ -.++.+.+...|++-+..+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 3334444332 44566788888887766665532 2344555555443 4667888888888877643 4432222
Q ss_pred H---H----------HHHHHhcCChHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010292 301 L---L----------LRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364 (513)
Q Consensus 301 ~---l----------l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (513)
. . -+-..+.|++..|.+.+.+.+.. ...+++..|........+.|+.+++..--.....+...-
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 1 1 12345788999999999888763 345566667666677777887776544333222221111
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010292 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407 (513)
Q Consensus 365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 407 (513)
+... ..-..++...++|++|.+-|++..+....+....++.
T Consensus 321 ikal--l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 321 IKAL--LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 1111 1122334445778888888887776544433333333
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.07 E-value=3.4 Score=32.13 Aligned_cols=91 Identities=9% Similarity=-0.133 Sum_probs=66.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHH---HHHHHHHHHH
Q 010292 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPNVFT---YNYLIAGYMT 273 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~---~~~li~~~~~ 273 (513)
-+.+..|+.+.|++.|.+.... .+-+...||.-..++.-.|+.++|+.=+++..+. |.. +... |.--...|..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 4567889999999999998863 4567788999999999999999999888888764 322 2222 2223344666
Q ss_pred ccCHHHHHHHHHHHHcCC
Q 010292 274 AWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g 291 (513)
.|+.+.|..=|+..-+-|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 778888877777665544
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.07 E-value=3.4 Score=36.68 Aligned_cols=102 Identities=13% Similarity=-0.008 Sum_probs=82.3
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHH
Q 010292 122 AFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALL 197 (513)
Q Consensus 122 ~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li 197 (513)
.|...+..+ .++...|.+.|....+.--. -......+--|...+...|+++.|..+|..+.+..+. -...+--|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 688888888 56788899888877665321 2345667778999999999999999999999987653 467888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
.+..+.|+.++|..+|+++.+++ |+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y---P~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY---PGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC---CCCH
Confidence 89999999999999999999873 5543
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.06 E-value=8.3 Score=36.61 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=37.2
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC---SKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
...+|..+...+-+.|+++.|...+..+...+... .....-.-.+.....|+.++|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666666533111 223344445556666666666666666655
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.61 E-value=0.5 Score=28.93 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 441 YHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555556666666666555554
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.26 E-value=0.36 Score=28.03 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 475 TFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888744
No 272
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.89 E-value=8.6 Score=34.05 Aligned_cols=230 Identities=11% Similarity=0.077 Sum_probs=143.7
Q ss_pred cccCchhHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc---cC-
Q 010292 115 RRHSNGYAFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK---HL- 187 (513)
Q Consensus 115 ~~~p~~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~- 187 (513)
+..||+..=+..-.+- ...|+.|+.-|+.+.++.+-.-..--.+...+|..+.+.|++++..+.+.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3466766655555433 2478899999998887754333334456778899999999999999999887632 11
Q ss_pred C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010292 188 K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV----TYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--- 258 (513)
Q Consensus 188 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--- 258 (513)
. +..+.|+++.....+.+.+.-.++|+.-.....-.-|.. |-+-|.+.|...|++....++++++.+..-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1 456788888888888887777777765332101111222 3345777788888888888888888743211
Q ss_pred --------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-----HhcCChHHHHH-HHHHHH
Q 010292 259 --------PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGY-----AHSGNLPRMEK-IYELVK 323 (513)
Q Consensus 259 --------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~-~~~~~~ 323 (513)
.=...|..=|..|....+-.+...+|++... ..-.|..... .+|+-| .+.|++++|.. +|+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1135677778888888888888888887654 2233444333 334433 46678877643 444444
Q ss_pred h---ccCCCcHH--HHHHHHHHHHhcC
Q 010292 324 H---HVDGKEFP--LIRAMICAYSKCS 345 (513)
Q Consensus 324 ~---~~~~~~~~--~~~~li~~~~~~g 345 (513)
. .|.+.... -|-.|.+++.+.|
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3 34332222 3445556666654
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=17 Score=37.42 Aligned_cols=104 Identities=10% Similarity=0.158 Sum_probs=71.2
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
-|+.+.+.+.+++|+++-+.....-.. ....+...|..+.-.|++++|-...-.|... +..-|--.+.-+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccc
Confidence 467778888899998887766543222 3567888889999999999999988888753 666777777777766
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010292 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
++.... +.-+.......+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 665543 2233332223456677777777665
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.82 E-value=0.23 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=20.0
Q ss_pred HHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 179 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
|++..+..+.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444446777777777777777777664
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.58 E-value=8.4 Score=33.31 Aligned_cols=226 Identities=8% Similarity=-0.063 Sum_probs=107.7
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292 239 LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555665555543221 12456666666777777777777777666542 22334555666666666666677777
Q ss_pred HHHHHHHhccCCCcHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 317 KIYELVKHHVDGKEFPLIRAMIC-AYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
+.+.........+. ........ .+...|+++.+...+......... .............+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 77766665433321 11111222 455556555555554443221111 0000001112222344555666666655555
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
...... ....+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+....
T Consensus 195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 532211 2233444555555555555555555555433221 1222222222333444555555555555443
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.38 E-value=3.2 Score=34.89 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
.+..+...|++.|+.++|++.|.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~ 63 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRAR 63 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34444444444444444444444444
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.22 E-value=5.9 Score=31.59 Aligned_cols=74 Identities=9% Similarity=-0.078 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 377 YAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
..+.|++++|.+.|+.+..+-... -....--.++.+|.+.+++++|...+++..+.....-..-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 345566666666666655532211 11222334566666666666666666666554433223334545555443
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.03 E-value=0.6 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 010292 193 YNALLGAYMYNGLSDKCQSLFRD 215 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~ 215 (513)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556666666666666666665
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.66 E-value=8.2 Score=32.45 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
+..+...|++.|+.+.|.+.+.++.+....+. ...+-.+|......+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455555555555555555555544332222 223344455555555555555555443
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.51 E-value=18 Score=35.30 Aligned_cols=155 Identities=10% Similarity=0.084 Sum_probs=88.0
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292 273 TAWMWGKVEEIYQMMKAGPVMPDTN-TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
+..+...-.++-++..+ +.||-. .|..|. --....+.++++++++..+.|-.. .-...... ..|.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~----- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH----- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc-----
Confidence 44455555555555555 345533 332222 123445788888888877653210 00000111 1110
Q ss_pred HHHHHHHhCCCCCccc--chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292 352 KIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 429 (513)
.. +....++..+ +.-..+..++-+.|+.++|++.++++++.....+...+...|+.++...+.+.++..++.+-
T Consensus 246 -~~---e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 246 -FW---EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred -hh---hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 01 1111222222 21224777778889999999999999876544456667888999999999999999999987
Q ss_pred HhcCCcc-cHhhHHHHH
Q 010292 430 ESAGWRL-CRSLYHSKM 445 (513)
Q Consensus 430 ~~~~~~~-~~~~~~~li 445 (513)
.+...+. -...|+..+
T Consensus 322 dDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 322 DDISLPKSATICYTAAL 338 (539)
T ss_pred ccccCCchHHHHHHHHH
Confidence 5443222 234465544
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.46 E-value=8.9 Score=31.61 Aligned_cols=124 Identities=9% Similarity=-0.005 Sum_probs=55.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHhcCcHH
Q 010292 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI--VSSYFRCNAVD 420 (513)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~ 420 (513)
+.+..+++..++..+++..-.++.......+.......|+-..|...|+++-.....|.-..-...| ...+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555544444433333222211123334455566666666666665543333211111111 11233455565
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
....-++-+...+-..-...-..|--+-.+.|++.+|.+.|..+.+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555444333332233334444444456666666666666554
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.42 E-value=8 Score=31.01 Aligned_cols=52 Identities=12% Similarity=-0.049 Sum_probs=33.2
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
..++.+++..+++.|.-..+.....-..-...+...|++++|+.+|+++...
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4677777777777777655533322222333456778888888888887754
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=3.8 Score=37.08 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=57.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
...+-..++..-....+++.+...+-+++.... ..|+.. -.+++..+. .-+.+.++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 444555555555555667777777766654210 112211 122233322 2355677777777677777777777777
Q ss_pred HHHHHHHccCHHHHHHHHHHHHc
Q 010292 267 LIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+|+.+.+.+++.+|.++.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777776666544
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.53 E-value=6.9 Score=28.95 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=41.9
Q ss_pred HHHHHccCHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292 269 AGYMTAWMWG--KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 269 ~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
..|....+.| +..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++..-. +....|..+++
T Consensus 16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 3444434333 5666666677777888888888888888888888888888887776422 22225655543
No 285
>PRK11906 transcriptional regulator; Provisional
Probab=89.48 E-value=20 Score=34.86 Aligned_cols=111 Identities=7% Similarity=-0.025 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
..+|.++-+...+. .+.|......+..+....++++.|...|++....+.. ...+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666666663 3445555555666667777899999999988765522 23444444445566889999999998
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010292 463 EMENYK-IDCSKKTFWIMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 463 ~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (513)
+..+.. .+--.......++.|+..+ .+.|.+++-
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 866543 1112233334444666654 456666554
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=14 Score=32.32 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRCIVSSYFRCNAVDKLANFV 426 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 426 (513)
.|-.+....++..|.+.+++-.+-+ ..+.+..+...|+.+| ..|+.+++.+++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3444445556666666665432221 2233445555555554 345555554443
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.21 E-value=37 Score=36.97 Aligned_cols=82 Identities=15% Similarity=0.070 Sum_probs=42.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 452 (513)
-+.+|..+|+|.+|..+..++...... ...+-..|+.-+...++.-+|-+++.+... . +.-.+..|++..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de--~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDE--LVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHH--HHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHh
Confidence 456666667777777666554332111 111123455566666666666666555432 1 122344566666
Q ss_pred CHHHHHHHHHHH
Q 010292 453 RVEEMESVLKEM 464 (513)
Q Consensus 453 ~~~~A~~~~~~m 464 (513)
.|++|..+...-
T Consensus 1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHhc
Confidence 677776665443
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=2.1 Score=38.69 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
++..-....+++.++..+-++...... .++...+ .+++.| -.-+.++++.++..=...|+-||..+++.+|+.+.+
T Consensus 70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk 147 (418)
T KOG4570|consen 70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK 147 (418)
T ss_pred hhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence 333334456677777766665543211 1112112 233333 334667888888888889999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010292 451 QRRVEEMESVLKEMENYK 468 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~ 468 (513)
.+++.+|..+.-.|..+.
T Consensus 148 ~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 148 KENYKDAASVVTEVMMQE 165 (418)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999888777654
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.17 E-value=11 Score=31.03 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~ 392 (513)
++..+...|++-+|.++.+.
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 44444455555555554433
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.99 E-value=13 Score=31.38 Aligned_cols=95 Identities=7% Similarity=0.102 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
.+...+...+++++|+..++..+.......- ..+=-.|.+.....|.+|+|+..++.....++.+ .....-.+.+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHH
Confidence 3567788889999999998877653222111 1111234556677889999999998877666543 222344577888
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010292 451 QRRVEEMESVLKEMENYK 468 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~ 468 (513)
.|+-++|..-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999888775
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.58 E-value=13 Score=30.78 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 010292 221 NISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~ 241 (513)
|++|+...|..+++.+.+.|+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 444444444444444444443
No 292
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.52 E-value=14 Score=32.19 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=41.2
Q ss_pred HHhcCcHHHHHHHHHHHHh-cC-----------CcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 413 YFRCNAVDKLANFVKRAES-AG-----------WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~m~~-~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
+...|++..|+.-+..-.. .| -.|.+.....++..|. .+++++|.+++.++-+.|+.|.- ..+.+.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~F 279 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLF 279 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 4567888888777765421 11 1355555555555443 56788888888888888876643 233444
Q ss_pred HHH
Q 010292 481 YAY 483 (513)
Q Consensus 481 ~~~ 483 (513)
+.+
T Consensus 280 Rv~ 282 (333)
T KOG0991|consen 280 RVV 282 (333)
T ss_pred HHH
Confidence 444
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=88.05 E-value=27 Score=33.95 Aligned_cols=159 Identities=11% Similarity=-0.002 Sum_probs=87.7
Q ss_pred HHH--HHHHHHhccc-----CCHHHHHHHHHHHH---hccCCCHhHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 010292 157 EEY--TKGIKFAGRI-----NNVDLAADLFAEAA---NKHLKTIGTYNALLGAYMY---------NGLSDKCQSLFRDLK 217 (513)
Q Consensus 157 ~~~--~~ll~~~~~~-----g~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 217 (513)
..| ...+.+.... -..+.|+.+|++.. +..+.....|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 24567788888877 4333234455444433322 223455666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-CCCC
Q 010292 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPD 295 (513)
Q Consensus 218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~ 295 (513)
+. -.-|......+..+..-.++++.|..+|++....+ || ..+|...-..+.-.|+.++|.+.+++..+.. .+.-
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 43 14466666666666677777888888888877643 33 3444444445556777888888877755421 1112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 010292 296 TNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.......++.|+.. .++.|.+++-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 23333334455443 3555555553
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.01 E-value=34 Score=34.98 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=41.4
Q ss_pred HhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKD-------SNLSPNVFTYNYLIAGYMTAW-----MWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
....|.+.|...|+...+ .| +....+-+-.+|.+.. +.+.|..+|.+.-+.|. |+.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 344566666666666544 33 2223344444444422 44556666666555552 34333322222
Q ss_pred HHHh-cCChHHHHHHHHHHHhccC
Q 010292 305 GYAH-SGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 305 ~~~~-~g~~~~a~~~~~~~~~~~~ 327 (513)
-... ..+...|.++|...-+.|.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC
Confidence 2222 2345566666666655543
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.82 E-value=8.8 Score=28.08 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
.++-..|...-+....|++.+..+.+++|-+.+++..|.++|+.++.+...+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 3444444444445567777777777777777777777777777666432223335555443
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.29 E-value=0.34 Score=39.13 Aligned_cols=85 Identities=9% Similarity=0.119 Sum_probs=47.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010292 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.++..+.+.+..+....+++.+... +..-+....+.++..|++.++.+...++++.. +..-...++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhc
Confidence 3455555666666666666666653 33445666666777777766666666665521 112234455556666
Q ss_pred cCHHHHHHHHHHH
Q 010292 275 WMWGKVEEIYQMM 287 (513)
Q Consensus 275 g~~~~a~~~~~~m 287 (513)
|.++++.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 6666666665554
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.94 E-value=15 Score=29.93 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=27.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHcC
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
.+.++.+++..+++-|.-. .|.......+ ...+.+.|++.+|.++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455666666666666542 2332222111 12244566677777777766554
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.65 E-value=20 Score=30.89 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
-+.+||-+--.+...|+++.|.+.|+...+.++.... ..|.-|. +--.|+++.|.+=|...-+. .|+..--...+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD---DPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc---CCCChHHHHHH
Confidence 4567888888888999999999999999887654222 2232222 33468899998888877764 23322222222
Q ss_pred HHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHH
Q 010292 234 SVFGRLLLVDHMEAAF-QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV------MPDTNTYLLLLRGY 306 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~p~~~t~~~ll~~~ 306 (513)
-.--..-+..+|..-+ ++..+ .|..-|...|-.|--. ++ ....+++..+...- +.=..||--|.+-+
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLg-ki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLG-KI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHh-hc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2223344566666544 33332 3544555444433221 11 11223333333111 01246788888889
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 010292 307 AHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~ 325 (513)
...|+.++|..+|+-.+..
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 9999999999999987765
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.51 E-value=0.97 Score=25.81 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHH
Q 010292 470 DCSKKTFWIMYYAYATCGQRRKVN 493 (513)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~ 493 (513)
+-|...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666666666666666666664
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.32 E-value=2 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 474 KTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777777654
No 301
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.94 E-value=27 Score=31.68 Aligned_cols=132 Identities=12% Similarity=0.064 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL-L-LVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
+..+.+|+.+|+....+..+--|..+...+++..... + ....-.++.+-+. +.|-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777763321113455666777777666552 2 2222233333333 23456777888888888888888888
Q ss_pred HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhccCCCcHHHH
Q 010292 280 VEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL-----VKHHVDGKEFPLI 334 (513)
Q Consensus 280 a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~ 334 (513)
-.++++.-... +..-|...|..+|+.....|+..-..++.++ +++.++..+...-
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~ 281 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELR 281 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHH
Confidence 88888876654 4556788888888888888887766666654 3344444444443
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.83 E-value=8.7 Score=28.12 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555666666777777777777777777777777777776663
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.79 E-value=47 Score=34.42 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=41.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHC
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-------VDHMEAAFQEIKDS 255 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 255 (513)
+...| .+|--|.|+|++++|.++..+... +.......+-..+..|....+ -+....-|++....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 34455 456778899999999999977765 345566677778888876532 23445555555543
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.74 E-value=2.5 Score=23.78 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+|..+..+|...|++++|++.|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777788888888888888888877653
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.57 E-value=11 Score=27.94 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
++-..|...-+....|++.+..+.+++|-+.+++..|.++|+.++.+-......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 333444444445567777777777777777777777777777766543222225655554
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.04 E-value=3.5 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.00 E-value=52 Score=34.25 Aligned_cols=116 Identities=9% Similarity=0.044 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010292 381 DCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458 (513)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 458 (513)
.+.+.|..++........... ...+...+.......+...++.+.+....... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 355777777776544322211 12223333333333322445555555433222 23344455555556788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..+..|.... .-...-.--+.+++...|+.++|..+|++.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887775432 223333335667767788888888888775
No 308
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=84.89 E-value=22 Score=29.86 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCc--------------ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292 408 CIVSSYFRCNAVDKLANFVKRAESAGWR--------------LCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
+++..|-+..++.++.++++.|.+..+. +--...|.....|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4566677777777777777777554322 222234455555566666666666655
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.88 E-value=19 Score=28.99 Aligned_cols=54 Identities=4% Similarity=0.003 Sum_probs=35.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010292 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399 (513)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (513)
.++.++++.++..++-+.++.....+ .-.-.+...|++++|.++|+++.+.+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 56667777777777776665554443 2344456778888888888887775544
No 310
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.56 E-value=32 Score=35.41 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CC-------HhHHHHHHHHHHHcCC
Q 010292 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KT-------IGTYNALLGAYMYNGL 205 (513)
Q Consensus 134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~-------~~~~~~li~~~~~~g~ 205 (513)
+++-...++.|+++-.....++..+-..++-.|-...+++...++.+.++...- -+ ...|...+.---+-|+
T Consensus 179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence 344445566666654444445556666666666677777777777776655310 00 1123333333333456
Q ss_pred hHHHHHHHHHHHHh-CCCCCCH
Q 010292 206 SDKCQSLFRDLKKE-ANISPSI 226 (513)
Q Consensus 206 ~~~A~~~~~~m~~~-~g~~p~~ 226 (513)
-++|+++.-.|.+. +.+.||.
T Consensus 259 RakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCce
Confidence 66666666555443 2344553
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.52 E-value=6.3 Score=39.09 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
..-|..|-++....|++..|.+.|...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 334555555555555555555544443
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.88 E-value=3.4 Score=23.09 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
..|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777888888888888888877653
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.75 E-value=4.2 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555556666666666666665554
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.43 E-value=3.2 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555543
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.32 E-value=36 Score=30.35 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=112.7
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHc---CCCC
Q 010292 221 NISPSIVTYNTLISVF-GRLLLVDHMEAAFQEIKDSNLSPNV---FTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVM 293 (513)
Q Consensus 221 g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~ 293 (513)
+-.||+..=|..-.+- .+..+.++|+.-|++..+..-+... ...-.+|..+.+.|++++..+.|.+|.. ..+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4467765444322221 2344788899999988875333333 3345567888889999999998888864 1121
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010292 294 --PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEFP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366 (513)
Q Consensus 294 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 366 (513)
-+..+.++++.-.....+.+.-.++++.-.+. .-..+.. |-+.|-..|...|.+.+..++++.+......+-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23556677777776666666655555432221 0001111 2234556666667666666666665544322111
Q ss_pred c----------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-----hcCcHHHHH
Q 010292 367 P----------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-----RCNAVDKLA 423 (513)
Q Consensus 367 ~----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~ 423 (513)
. -+|++-|..|....+-.....++++.+.-....|.+.+ ..+|+-|. +.|.+++|.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHH
Confidence 1 12445566666666667777777766654444444432 34454443 345566553
No 316
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.11 E-value=25 Score=28.28 Aligned_cols=81 Identities=6% Similarity=0.082 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNL-----SPNVFTYNYLIAGYMTAWM-WGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
.|.++.-....+++.....+++.+.-... ..+..+|++++.+..+... --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566666666666666666666532100 1244566777776655544 33456667777766667777777777
Q ss_pred HHHHHhc
Q 010292 303 LRGYAHS 309 (513)
Q Consensus 303 l~~~~~~ 309 (513)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776554
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=25 Score=35.18 Aligned_cols=132 Identities=15% Similarity=0.031 Sum_probs=89.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.-+.+.+.+.+.|-.++|+++--. +.. -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D-------~d~----rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD-------PDQ----RFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC-------hhh----hhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHh
Confidence 345555555666666555544221 111 1123345677777776655442 5678999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
+.|++..|.+.|..... |..|+-.+...|+.+....+-...++.|.. |...-++...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 99999999999987764 566777788888888777777777777632 334455677899999888
Q ss_pred HHHHH
Q 010292 318 IYELV 322 (513)
Q Consensus 318 ~~~~~ 322 (513)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 87543
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.85 E-value=0.31 Score=39.40 Aligned_cols=119 Identities=12% Similarity=0.173 Sum_probs=73.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 452 (513)
++..+.+.+..+....+++.+...+.. .+....+.++..|++.++.++..++++... + .-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence 788888888888888888888865433 346678888888888887777777777211 1 12245677778888
Q ss_pred CHHHHHHHHHHHHhCC--CC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 453 RVEEMESVLKEMENYK--ID--CSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~--~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.+++|.-++.++.... +. -....|...+..+.+.++.+-...+.+..
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~ 135 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYC 135 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 8888888887765322 11 12233344444455555544444444333
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.58 E-value=72 Score=32.65 Aligned_cols=149 Identities=11% Similarity=-0.016 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHH--HH-HHHcCChHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHhcC-
Q 010292 172 VDLAADLFAEAANKHLKTIGTYNALL--GA-YMYNGLSDKCQSLFRDLKK-------EANISPSIVTYNTLISVFGRLL- 240 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~~~~~m~~-------~~g~~p~~~~~~~li~~~~~~g- 240 (513)
...|.++++...+.|.......-.++ .+ +....+.+.|+.+|+...+ + | +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCC
Confidence 56788888888887653222222222 22 4567789999999998876 3 3 3335566666776643
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--hcCChH
Q 010292 241 ----LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA--HSGNLP 313 (513)
Q Consensus 241 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~ 313 (513)
+.+.|..++.+.-+.|. |+....-..+.-... ..+...|.++|...-+.|.. +..-+..++.... -..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56779999988888775 454433322222222 24577999999998888743 2222222222221 233677
Q ss_pred HHHHHHHHHHhcc
Q 010292 314 RMEKIYELVKHHV 326 (513)
Q Consensus 314 ~a~~~~~~~~~~~ 326 (513)
.|..++++..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888888776
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.55 E-value=5.2 Score=22.35 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 475 TFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777777776654
No 321
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.51 E-value=49 Score=30.67 Aligned_cols=162 Identities=6% Similarity=-0.071 Sum_probs=109.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcc
Q 010292 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY----NYLIAGYMTAW 275 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g 275 (513)
..-.|+..+|-..++++.++ .+-|...++..=.+|.-.|+.+.-...++++... -.+|...| ....-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 44568888999999999974 5778889999999999999999999999888743 12343332 33344556789
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC---cHHHHHHHHHHHHhcCChhHHHH
Q 010292 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK---EFPLIRAMICAYSKCSVTDRIKK 352 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~ 352 (513)
-+++|++.-++..+-+ +-|...-.++...+-..|+..++.++..+-...-... -..-|-...-.+...+.++.|.+
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999888744 2366677777778888899999988876544321111 11112222334555677887777
Q ss_pred HHH--HHHhCCCCCc
Q 010292 353 IEA--LMRLIPEKEY 365 (513)
Q Consensus 353 ~~~--~~~~~~~~~~ 365 (513)
++. +..+....+.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 743 4455555444
No 322
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=80.47 E-value=36 Score=29.14 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 432 (513)
+...+...+.++.|...+......... ....+..+...+...+..+.+...+......
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555666666666666553222 1222333333444555677777666665543
No 323
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.26 E-value=68 Score=32.21 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=55.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.|..+|.---.....+.+..+++.+...-+---.-|-.....=.+-|..+.+.++|++-.+ |++-+...|...+..++
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHh
Confidence 3334443333333334444444444432111222333333333444555555555555553 44444444444333322
Q ss_pred -hcCChhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 238 -RLLLVDHMEAAFQEIKDS-NLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 238 -~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
..|+.+.....|+..+.. |.. .....|...|..-...+++..+.++|++.++
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 234444444444444431 110 1233444444444445555555555555544
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.17 E-value=13 Score=31.89 Aligned_cols=57 Identities=14% Similarity=0.010 Sum_probs=33.7
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010292 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (513)
+..++.+.+.+.+.+|+...++-.+..+.+...-..+++.+|-.|++++|..-++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344555556666666666666555554445555566666666666666666555544
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.06 E-value=3.6 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 479 MYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666665543
No 326
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.98 E-value=62 Score=31.56 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=39.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHc
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVT--YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF--TYNYLIAGYMTA 274 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~ 274 (513)
..+..|+.+-+.. +.+. |..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..
T Consensus 8 ~A~~~g~~~iv~~----Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 8 DAILFGELDIARR----LLDI-GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHhCCHHHHHH----HHHC-CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3445566544433 3333 66666533 2345555566676653 34444556555432 112344555566
Q ss_pred cCHHHHHHHHH
Q 010292 275 WMWGKVEEIYQ 285 (513)
Q Consensus 275 g~~~~a~~~~~ 285 (513)
|+.+.+..+++
T Consensus 79 g~~~~v~~Ll~ 89 (413)
T PHA02875 79 GDVKAVEELLD 89 (413)
T ss_pred CCHHHHHHHHH
Confidence 77666555443
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.59 E-value=10 Score=32.53 Aligned_cols=73 Identities=12% Similarity=0.045 Sum_probs=43.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcccHhhHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYHSKMVM 447 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~ 447 (513)
.++.+.+.+.+.+|+....+-++. .|++...-..+++.+|-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 455666667777777776665553 3444444556777777777777777666655332 223344555555543
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.40 E-value=23 Score=30.19 Aligned_cols=72 Identities=10% Similarity=-0.078 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHhcCChHHH
Q 010292 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
+.|.+.|-++...+..-+....-.|...|. ..+.+++.+++....+ .+-.+|+..+.+|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444444333333333333333333 2344444444444332 12234444455555555554444443
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.26 E-value=4.5 Score=22.30 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=13.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 010292 196 LLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
+..++.+.|++++|.+.|+++..+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666665544
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.98 E-value=31 Score=30.98 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-----cCcHHHHHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-----CNAVDKLANFV 426 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~ 426 (513)
+-|-.|.+.+....+.++-..-+.....-... -|.+++..|.. .|.+++|+++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQDPSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCcccCCch-hhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34555556666665555555444432211111 24444444333 45666665555
No 331
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.81 E-value=32 Score=27.62 Aligned_cols=89 Identities=8% Similarity=0.078 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----cccHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGW-----RLCRSLYHSKMVMYASQRR-VEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
...|.++.-....++......+++.+..... ..+...|.+++.+..+..- ---+..+|+-|++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467777777777888888887777632111 2356679999999977666 445678888898888999999999
Q ss_pred HHHHHHHhcCCHhHH
Q 010292 478 IMYYAYATCGQRRKV 492 (513)
Q Consensus 478 ~li~~~~~~g~~~~A 492 (513)
.+|.++.+--..+..
T Consensus 120 ~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 120 CLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHHHcCCCCcch
Confidence 999999876444433
No 332
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.65 E-value=60 Score=30.65 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
...+..+.|+++...++....... .++...|.++... +.++.+++....+....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677888888855555555422 3455555555544 77888888887777664
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.64 E-value=1e+02 Score=32.74 Aligned_cols=223 Identities=10% Similarity=0.010 Sum_probs=116.9
Q ss_pred HccCHHHHHHHHHHHHcC----CCCCCHH---HHHHHHH-HHHhcCChHHHHHHHHHHHhc----cCCCcHHHHHHHHHH
Q 010292 273 TAWMWGKVEEIYQMMKAG----PVMPDTN---TYLLLLR-GYAHSGNLPRMEKIYELVKHH----VDGKEFPLIRAMICA 340 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~----g~~p~~~---t~~~ll~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~ 340 (513)
-..++++|..++.+.... +..+... .++.|-. .....|+++.|.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 467889998888876542 2222222 3333321 223467888888888776553 233455666777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCccc----chHHHHHHHHHhcCC--HHHHHHHHHHHHhc-----CCCCchHHHHHHH
Q 010292 341 YSKCSVTDRIKKIEALMRLIPEKEYRP----WLNVLLIRVYAKEDC--LEEMEKSINDAFEH-----KTSVTTVRIMRCI 409 (513)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~--~~~a~~~~~~~~~~-----~~~~~~~~~~~~l 409 (513)
..-.|++++|..+.+...++....-.. |.--.-...+...|+ +++.+..|...... +....-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888898888887777776664332222 210011223344453 33333333332221 1111223345555
Q ss_pred HHHHHhcCcHHHHHHHHH----HHHhcCCcccHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH
Q 010292 410 VSSYFRCNAVDKLANFVK----RAESAGWRLCRSL--YHSKMVMYASQRRVEEMESVLKEMENYKIDC----SKKTFWIM 479 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~~~----~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l 479 (513)
+.++.+ .+.+..-.. --......|-..- +..|...+...|+.++|...++++......+ +..+-...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555555 333322222 2122222222222 2366778888999999999999887653333 22222222
Q ss_pred HH--HHHhcCCHhHHHHHHHH
Q 010292 480 YY--AYATCGQRRKVNQVLGL 498 (513)
Q Consensus 480 i~--~~~~~g~~~~A~~~~~~ 498 (513)
++ .-..+|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23467888777776655
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.39 E-value=29 Score=29.57 Aligned_cols=73 Identities=8% Similarity=-0.064 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHccCHHHHH
Q 010292 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS---NLSPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
+.|++.|-.+... +.--+......|...|. ..+.++++.++.+..+. +-.+|...+..|.+.+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5666666666654 44444444455555554 44566666666665532 22456677777777777777766664
No 335
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=76.13 E-value=47 Score=28.05 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010292 443 SKMVMYASQRRVEEMESVLKEMENYK--------------IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
+++..|.+..++.+..++++.|.+.. ..+-...-|.....|.+.|..|.|+.+++ +...-.|.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~t 213 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIIST 213 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeecC
Confidence 56677888899999999999888742 22455677888899999999999999987 44444555
Q ss_pred CCC
Q 010292 509 NAF 511 (513)
Q Consensus 509 ~t~ 511 (513)
.+|
T Consensus 214 ~lW 216 (233)
T PF14669_consen 214 PLW 216 (233)
T ss_pred CCC
Confidence 444
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.99 E-value=54 Score=28.74 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=15.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 010292 449 ASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
+..+++.+|+.+|++.....+..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456777778888777766544433
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.89 E-value=44 Score=32.48 Aligned_cols=121 Identities=7% Similarity=-0.030 Sum_probs=78.0
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010292 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 245 (513)
-...|++-.|.+-+....++.+.++......-..+...|+++.+...+....+- +.....+...++....+.|+++.|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 334566665544443333332223333333444566779999999988887653 455667888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
..+-+.|....++ +...........-..|-+|++...+++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 9998888877664 444444333334455667777777777643
No 338
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=75.85 E-value=64 Score=29.48 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHHhcCcHHH-HHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTT---VRIMRCIVSSYFRCNAVDK-LANFVKRAESAGWRLCRSLYHSKMVMY 448 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~li~~~ 448 (513)
|..-......+++.....++-.++...|.. ..+|..++++-.-+++-+. |.+.++.+ .+|..|+.++
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af 331 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAF 331 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHH
Confidence 455555556677777666665555444432 1246666655443332221 33334332 3577788888
Q ss_pred HhcCCHHHHH
Q 010292 449 ASQRRVEEME 458 (513)
Q Consensus 449 ~~~g~~~~A~ 458 (513)
+..|+.+-++
T Consensus 332 ~s~g~sEL~L 341 (412)
T KOG2297|consen 332 CSQGQSELEL 341 (412)
T ss_pred hcCChHHHHH
Confidence 8888776554
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.81 E-value=7 Score=23.90 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=15.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 010292 302 LLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456666777777777777666654
No 340
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.79 E-value=52 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010292 405 IMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 431 (513)
||--+..-+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.69 E-value=1.3e+02 Score=32.43 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (513)
-.|......+-++.+++.+....-.++....+.++.-|++
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3567777888899999998877656677778888877764
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.66 E-value=5 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHhHHHHHHH
Q 010292 478 IMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~ 497 (513)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44455555555555555543
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.49 E-value=10 Score=21.13 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.04 E-value=6.3 Score=21.67 Aligned_cols=26 Identities=12% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 477 WIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
-.+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556677777788888877777654
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.82 E-value=71 Score=29.06 Aligned_cols=70 Identities=13% Similarity=0.011 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH-----HHCCCCCCCCCC
Q 010292 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM-----CKNGYDVPVNAF 511 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~t~ 511 (513)
++.....|..+|.+.+|.++-+.....+ +.+...|..|+..+...|+--.|.+-+++| .+.|+..|.+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4555678889999999999999999877 778888999999999999977777777766 345887777654
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.74 E-value=34 Score=25.36 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=35.5
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010292 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476 (513)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 476 (513)
..+.+.|++++|..+.+.. ..||..-|-.| +-.+.|-.+.+..-+.+|..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4455677777777766643 35666655544 2345666666666666777666 4544444
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.91 E-value=90 Score=30.44 Aligned_cols=139 Identities=13% Similarity=-0.015 Sum_probs=71.7
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCC-CH--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh
Q 010292 164 KFAGRINNVDLAADLFAEAANKHLK-TI--GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLISVFGR 238 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~~~~~ 238 (513)
...++.|+.+.+..+++ .|.. +. ....+.+...+..|+.+ +.+.+.+. |..|+.. ...+.+...+.
T Consensus 7 ~~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~-ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKH-GAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhC-CCCccccCCCcccHHHHHHH
Confidence 34456788776666654 4542 22 12344556667778865 44444543 6656543 12345566678
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHhcCChH
Q 010292 239 LLLVDHMEAAFQEIKDSNLSPNVF---TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT--YLLLLRGYAHSGNLP 313 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~ 313 (513)
.|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 888877666654 33222111 1123344455566654 4445555666554321 123344455677765
Q ss_pred HHHHHH
Q 010292 314 RMEKIY 319 (513)
Q Consensus 314 ~a~~~~ 319 (513)
.+..++
T Consensus 150 ~v~~Ll 155 (413)
T PHA02875 150 GIELLI 155 (413)
T ss_pred HHHHHH
Confidence 544443
No 348
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.69 E-value=59 Score=27.76 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=63.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 374 IRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
..-+.++|++++|..-|.+.+..-...+ ....|..-..++.+.+.++.|++--.+..+.+..- .....--..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHh
Confidence 4457788999999999998887433222 12234444556677888888887777766655321 1112222457788
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010292 451 QRRVEEMESVLKEMENYK 468 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~ 468 (513)
...+++|+.=|+.+.+.+
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 899999999999998875
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.60 E-value=56 Score=27.36 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010292 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
+++|.+.|++... ..|+..+|+.-+.... .|-+++.++.+++.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 4455555555554 4577777777776663 24555555555443
No 350
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.49 E-value=97 Score=30.04 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010292 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
...|+.-|.-.|++.+|...++++.--- --....+.+++.+..+.|+-...+.+++..-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 3456677777788877777776653211 12345677777777777777777777777666654
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.27 E-value=2.4e+02 Score=34.00 Aligned_cols=314 Identities=8% Similarity=-0.032 Sum_probs=158.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+-.+++.+..|...++.-.....+ ...-|..+...|+.-+++|....+...-.. .|+. ..-|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl---~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL---YQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH---HHHHHHHH
Confidence 3444556788888888888873211111 233445555588888888888777764222 2332 23444566
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHhcCChHHHH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL-LRGYAHSGNLPRME 316 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~ 316 (513)
..|++..|..-|+.+.+.+. +...+++-++......|.++.+.-..+-.... ..+....++++ +.+--+.+++|..+
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 78899999999999987643 23667777777777777777777655444332 12223333322 34445667777766
Q ss_pred HHHHHHHhccCCCcHHHHHH--HHHHHHhcCChhHH--HHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 317 KIYELVKHHVDGKEFPLIRA--MICAYSKCSVTDRI--KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 392 (513)
+.+. .. +..+|.+ +...+.+...-|.. .+..+..++..-. =+.++...|-+..+.++.-+
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~---------~lsa~s~~~Sy~~~Y~~~~k 1602 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE---------NLSACSIEGSYVRSYEILMK 1602 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh---------hHHHhhccchHHHHHHHHHH
Confidence 6655 11 1111211 12222221111110 0111111111000 00111111111111111100
Q ss_pred ---------HHh--cCCCCchHHH-----HHHHHHHHHhcCcHHHHHHHHH----HHHhcCCc-----ccHhhHHHHHHH
Q 010292 393 ---------AFE--HKTSVTTVRI-----MRCIVSSYFRCNAVDKLANFVK----RAESAGWR-----LCRSLYHSKMVM 447 (513)
Q Consensus 393 ---------~~~--~~~~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~----~m~~~~~~-----~~~~~~~~li~~ 447 (513)
+.+ .+..+.+... |-.-+. +.+....+.+-+- .+...... -...+|-...+.
T Consensus 1603 LH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAri 1679 (2382)
T KOG0890|consen 1603 LHLLLELENSIEELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARI 1679 (2382)
T ss_pred HHHHHHHHHHHHHhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 000 0011111111 111111 1121111222111 11111111 124557777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
.-+.|+++.|...+-+..+.+ .| ..+.-..+-..+.|+...|+.++++..+....
T Consensus 1680 aR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1680 ARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 778999999999887777766 33 45667778899999999999999998876543
No 352
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.36 E-value=19 Score=22.46 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=17.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
.+.|-+.++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555555444
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.56 E-value=72 Score=28.84 Aligned_cols=83 Identities=11% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh--
Q 010292 268 IAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-- 343 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 343 (513)
|.+++..+++.+++...-+--+. .+.|.+ ...-|-.|.+.+++..+.++-..-...--..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56666777777766654433321 233332 333344466677776666666555443222233335555555543
Q ss_pred ---cCChhHHHH
Q 010292 344 ---CSVTDRIKK 352 (513)
Q Consensus 344 ---~g~~~~a~~ 352 (513)
.|.+++|++
T Consensus 168 LlPLG~~~eAee 179 (309)
T PF07163_consen 168 LLPLGHFSEAEE 179 (309)
T ss_pred HhccccHHHHHH
Confidence 255554443
No 354
>PRK10941 hypothetical protein; Provisional
Probab=69.55 E-value=85 Score=28.50 Aligned_cols=78 Identities=10% Similarity=-0.036 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIA 269 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~ 269 (513)
..+.+-.+|.+.++++.|+++.+.+..- .|+ ..-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l---~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF---DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3456667788888888888888888753 344 4455556666888888888888777776543 2345555555554
Q ss_pred HHH
Q 010292 270 GYM 272 (513)
Q Consensus 270 ~~~ 272 (513)
..-
T Consensus 260 ~l~ 262 (269)
T PRK10941 260 SIE 262 (269)
T ss_pred HHh
Confidence 443
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.31 E-value=21 Score=22.30 Aligned_cols=30 Identities=7% Similarity=0.041 Sum_probs=13.5
Q ss_pred ccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
.|-..++..++++|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344444444444444444444444444333
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.23 E-value=47 Score=24.68 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 010292 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 205 ~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
..++|..|-+.+... +.. ...+--+-+..+.+.|++++|..+.+.+ ..||...|-.|-.. +.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHH
Confidence 356777777766643 211 2222223345566778888888777666 35788777766543 566666666666
Q ss_pred HHHHcCCCCCCHHHH
Q 010292 285 QMMKAGPVMPDTNTY 299 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~ 299 (513)
..|...| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666655 3333333
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.12 E-value=96 Score=28.26 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 429 (513)
....|..+|.+.+|.++.+..+. ..|-+...+-.+++.+...|+--.+.+-++++
T Consensus 285 va~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45566666777777766666555 23334445666666666666655555555544
No 358
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.07 E-value=1.1e+02 Score=28.85 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=31.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHhHHHHHHHHHHHCC
Q 010292 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY----ATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g 503 (513)
+.+.++..-|...+..|..+++..-..||.+|--.+ .+-+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 445566666666666666666655555665543332 23455566666666666554
No 359
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.85 E-value=2e+02 Score=31.85 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
+.+|..+|+|.+|+.+...+.... .--..+-..|+.-+...++.-+|-++..+...
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 455666677777766666553211 11112224566667777888788777777654
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.39 E-value=25 Score=24.73 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=28.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHH
Q 010292 379 KEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANF 425 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 425 (513)
...+.++|+..|...+++-..++ ...++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777666443332 334556666777777777666554
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.02 E-value=35 Score=24.53 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=6.2
Q ss_pred CChHHHHHHHHHHH
Q 010292 204 GLSDKCQSLFRDLK 217 (513)
Q Consensus 204 g~~~~A~~~~~~m~ 217 (513)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 362
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.94 E-value=46 Score=30.85 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=32.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
-|.+.|.+++|+..|..-.. +.| |.++|..-..+|.+...+..|+.=-+...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 46667777777777766553 244 66666666667776666666555444443
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.18 E-value=24 Score=24.83 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHH
Q 010292 450 SQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQV 495 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 495 (513)
...+.++|+..|+...++-..+. -.++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766665432222 23455666777777777666554
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.04 E-value=30 Score=29.55 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..|+..+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356666666666666666666666666666654
No 365
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=64.95 E-value=1.4e+02 Score=29.13 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
++...+.+++ ..+.-+..|-..=+.+.|-.|+++-...+.+.--.-.++|..-.+.|+-++.+ |+.+-|. .+.+
T Consensus 98 ~vVk~L~~~g-a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk-Gh~~I~q----yLle 171 (615)
T KOG0508|consen 98 EVVKLLLRRG-ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK-GHVDIAQ----YLLE 171 (615)
T ss_pred HHHHHHHHhc-CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc-CchHHHH----HHHH
Confidence 3444444444 33444444444556666667777766666644333333455555555555443 5544443 3444
Q ss_pred hCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHH
Q 010292 219 EANISPSIVTY--NTLISVFGRLLLVDHMEAAFQ 250 (513)
Q Consensus 219 ~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~ 250 (513)
. |..+|..++ |+.+.-|+..|.++-...++.
T Consensus 172 ~-gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 172 Q-GADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred h-CCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 3 667777666 778888888887765554443
No 366
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.39 E-value=18 Score=24.44 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=28.7
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010292 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486 (513)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (513)
|....++.++..+++..-+++++..+.+..+.|. .+..+|.--++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4444556666666666666666666666666663 4555555555555554
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.81 E-value=1.2e+02 Score=27.51 Aligned_cols=200 Identities=16% Similarity=0.110 Sum_probs=102.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHH----HHhccCCCcHHHHH
Q 010292 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN-------TYLLLLRGYAHSGNLPRMEKIYEL----VKHHVDGKEFPLIR 335 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~ 335 (513)
+.+-..+.+++++|+..|.++...|+..|.. +...+.+.|...|+...-.+.... |.+...+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4556678899999999999999999887654 455677888888887776666543 33333333444556
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHhCCCCCcccc----hHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHH
Q 010292 336 AMICAYSKCS-VTDRIKKIEALMRLIPEKEYRPW----LNVLLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIM 406 (513)
Q Consensus 336 ~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 406 (513)
+|++.+.... .++...++.....+...+.-..+ .-.-++..+.+.|++.+|+.+...+.. -...+.-..++
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 6666655432 23333333222222111111111 112467777778888887766544332 22223222222
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc----CCcccHhhHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 010292 407 RCIVSSYFRCNAVDKLANFVKRAESA----GWRLCRSLYHSKMVMY--ASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 466 (513)
-.=-.+|-...++.++..-+...+.. -++|-...---|+.+. |...++.-|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 11223344444444444444433211 1222222222233332 344556666666655543
No 368
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=62.14 E-value=1.4e+02 Score=29.93 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 430 (513)
-++.-|.+.+++++|..++..|-=......-....+.+.+.+.+..--++.+..++.+.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 36677777788888887776654321111122334445555555543444444444444
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.70 E-value=1.4e+02 Score=27.95 Aligned_cols=78 Identities=9% Similarity=0.079 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH---cCChHHHHHHH
Q 010292 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY---NGLSDKCQSLF 213 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 213 (513)
.+.+++...+. .+-+....-.+|+.+.+..+.++..+-++++....+.+...|-..|..... .-.++....+|
T Consensus 50 klsilerAL~~----np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 50 KLSILERALKH----NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34555555443 345677777778888888888888888888887766577777777765544 22455666666
Q ss_pred HHHHH
Q 010292 214 RDLKK 218 (513)
Q Consensus 214 ~~m~~ 218 (513)
.+..+
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55443
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.58 E-value=76 Score=24.76 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+..+-+.......+.|+.......+++|-+.+|+..|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666677788899999999999999999999999999888764
No 371
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=61.51 E-value=1.7e+02 Score=32.15 Aligned_cols=27 Identities=11% Similarity=0.373 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHhc
Q 010292 406 MRCIVSSYFRCN--AVDKLANFVKRAESA 432 (513)
Q Consensus 406 ~~~li~~~~~~~--~~~~a~~~~~~m~~~ 432 (513)
+..+|.+|++.+ ++++|+..+..+++.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 445556666655 566666666655533
No 372
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.49 E-value=1.6e+02 Score=30.70 Aligned_cols=185 Identities=10% Similarity=0.016 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010292 206 SDKCQSLFRDLKKEANISPSIVTYNT--LISVFGRLLLVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (513)
+.+.+...+.|-.. .-.| .....+ +=+.|...|++++|+++--... ...+.++...+..++.-|... -.+++.+
T Consensus 39 Isd~l~~IE~lyed-~~F~-er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~ 115 (929)
T KOG2062|consen 39 ISDSLPKIESLYED-ETFP-ERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASE 115 (929)
T ss_pred hhhhHHHHHHHhcc-CCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHH
Confidence 44555556666543 2223 333333 3367888899999887643332 234566666677666555432 2233444
Q ss_pred HHHHHH-cCCCCCC-HHHHHHHHHHHHhcCChHHHHHH---------HHH-HHhccCCCcHHHHHHHHHHHHhcCC-hhH
Q 010292 283 IYQMMK-AGPVMPD-TNTYLLLLRGYAHSGNLPRMEKI---------YEL-VKHHVDGKEFPLIRAMICAYSKCSV-TDR 349 (513)
Q Consensus 283 ~~~~m~-~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~---------~~~-~~~~~~~~~~~~~~~li~~~~~~g~-~~~ 349 (513)
.++.-. ..++.+- .....-++..|...+++..|+.+ +++ +.+.....+ ..+.+++.+....+ -+-
T Consensus 116 ~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~ef 193 (929)
T KOG2062|consen 116 TYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREF 193 (929)
T ss_pred HhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHH
Confidence 443222 1222221 23445555555555555544433 222 222222222 23333333332221 111
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
-.++++.+-+.-.+...|+ +..+..+|....+.+.+.++++++.++
T Consensus 194 R~~vlr~lv~~y~~~~~PD-y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 194 RNKVLRLLVKTYLKLPSPD-YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHccCCCCC-eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 1223333333223333333 224788888889999999999998874
No 373
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.13 E-value=1.3e+02 Score=27.36 Aligned_cols=115 Identities=7% Similarity=0.018 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010292 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK----DSNLSPNVFTYNYLI-AGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
|-.--...+..+...|++.++.+.+.++..+.. ..|.+-|+...-+-+ -.|....-.++-++..+.|.++|...+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 333345567777888888888888777665554 345555554333222 223333345677777778887775433
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010292 296 ----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337 (513)
Q Consensus 296 ----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (513)
-.+|.-+-. ....++.+|-.++-+....--......|...
T Consensus 190 RrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~ 233 (412)
T COG5187 190 RRNRYKVYKGIFK--MMRRNFKEAAILLSDILPTFESSELISYSRA 233 (412)
T ss_pred hhhhHHHHHHHHH--HHHHhhHHHHHHHHHHhccccccccccHHHH
Confidence 223333322 2234677777777665544333333334433
No 374
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=60.95 E-value=2.1e+02 Score=29.55 Aligned_cols=248 Identities=7% Similarity=0.025 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292 118 SNGYAFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 118 p~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
+.+..|..+++.+.. ..+.-.++++.+.. .. ...+..+++++...|--....-+.+.+....+.+...-..+
T Consensus 308 ~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~------~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~ 380 (574)
T smart00638 308 PAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK------KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLL 380 (574)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHH
Q ss_pred HHHHHHc-CChHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCH
Q 010292 197 LGAYMYN-GLSDKCQSLFRDLKKEANISPSI-------VTYNTLISVFGRLLL-------VDHMEAAFQEIKDSNLSPNV 261 (513)
Q Consensus 197 i~~~~~~-g~~~~A~~~~~~m~~~~g~~p~~-------~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~ 261 (513)
..+..-. .--.+.++.+.+|.+.....+.. .+|..+++-+|.... -+-...+.+.+.+.--.-|.
T Consensus 381 ~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 381 AVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--GNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
.--...|.++.+.|.......+-..+. .....+...-...+.++.+. ...+.+..++-.+....-.+...=..+++.
T Consensus 461 ~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 461 EEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred hheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHH
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 010292 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373 (513)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (513)
.....-.......+...+..-....+..+.++.|
T Consensus 540 lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 540 LMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.81 E-value=2.4e+02 Score=30.23 Aligned_cols=223 Identities=12% Similarity=0.037 Sum_probs=112.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC----H---HHHHHHHH-HHHHccCHHHHHHHHHHHHcC----CCCCCHHHHHHHHHH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPN----V---FTYNYLIA-GYMTAWMWGKVEEIYQMMKAG----PVMPDTNTYLLLLRG 305 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~----~---~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~ 305 (513)
...++++|..++.++...-..|+ . ..|+.+-. .....|++++|.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 45678888888777764322222 1 23443332 233567888888887776542 233456777778888
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHH---HHHHHH--HHHhcCChhHH--HHHHHHHHhCC-----CCCcccchHHHH
Q 010292 306 YAHSGNLPRMEKIYELVKHHVDGKEFPL---IRAMIC--AYSKCSVTDRI--KKIEALMRLIP-----EKEYRPWLNVLL 373 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~--~~~~~g~~~~a--~~~~~~~~~~~-----~~~~~~~~~~~l 373 (513)
..-.|++++|..+.....+..-.-+... |..+.. .+...|....+ +.++.....-. ..+....+...+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 8888999999888877655322223332 233222 23344522222 22222222211 111111222234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----cCCCCchHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----cHhhHHHH
Q 010292 374 IRVYAKEDCLEEMEKSINDAFE----HKTSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAGWRL----CRSLYHSK 444 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l 444 (513)
..++.+ ++.+..-.....+ ....+-+.. .+..|+......|+.++|...++++......+ +-..-...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444443 3333322222222 212222111 12356777888999999999988886543332 22221222
Q ss_pred HH--HHHhcCCHHHHHHHHHH
Q 010292 445 MV--MYASQRRVEEMESVLKE 463 (513)
Q Consensus 445 i~--~~~~~g~~~~A~~~~~~ 463 (513)
+. .-...|+.+.|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 22357777777766655
No 376
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.19 E-value=56 Score=27.36 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----C-------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----L-------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
+++|..-|++....++....++..+..+|...+ + +++|.+.|+..... .|+...|+.-+....
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH---
Confidence 345555555555555555566666666665433 2 45566666666543 788888888777763
Q ss_pred ChhHHHHHHHHHHHCCC
Q 010292 241 LVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~ 257 (513)
.|-++..++.+.+.
T Consensus 125 ---kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ---KAPELHMEIHKQGL 138 (186)
T ss_dssp ---THHHHHHHHHHSSS
T ss_pred ---hhHHHHHHHHHHHh
Confidence 35556666655543
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.16 E-value=26 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 441 YHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
--.+|.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345666666666666666665554
No 378
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.10 E-value=1.4e+02 Score=27.72 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCcccHhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 010292 404 RIMRCIVSSYFRCNAVDKLANFVKRA----ESAGWRLCRSLYHSKMV-MYASQRRVEEMESVLKEMENYKIDCSKK---- 474 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~---- 474 (513)
..+.....-||+.|+-+.|++.+++. ...|.+.|+..+.+-+- .|....-+.+-++..+.+.++|-.-+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34566778899999999999888765 35677888776554333 3344555667777778888888654432
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 475 TFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|..+ -|....++.+|..+|-+..
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 33322 2345667888888877654
No 379
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=59.78 E-value=79 Score=24.42 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010292 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
+.+..+++.+.+.|...|......++.....
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~ 39 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLR 39 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc
Confidence 3455666666776666666655566665554
No 380
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.34 E-value=9 Score=30.01 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (513)
.|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45556688888888888877764 77777654
No 381
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.14 E-value=65 Score=25.21 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHH
Q 010292 457 MESVLKEMENYKIDCSK-KTFWIMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 457 A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 497 (513)
..++|..|..+||--.. ..|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444445444443222 223334444444555555555443
No 382
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.08 E-value=17 Score=18.91 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 475 TFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.|..+...+...|+++.|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456666777777777777777776654
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.07 E-value=44 Score=22.25 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 194 NALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
-.+|.+|...|++++|.++.+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456666667777777666666654
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.05 E-value=75 Score=28.43 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~ 393 (513)
.|..-|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3555566666666666666554
No 385
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.41 E-value=64 Score=26.03 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=19.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010292 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
.+++.+...++.-.|.++++.+.+.+......|...-++.+...|-
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3344444444444455555555444443333333333444444443
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.17 E-value=27 Score=18.80 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292 171 NVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
+.+.|.++|+++....+.+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34445555555444332244444433
No 387
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.54 E-value=77 Score=29.27 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
...|..++.+|+...-.++|+..+++-.++
T Consensus 299 ~~l~kq~l~~~A~d~aieD~i~~L~~~~r~ 328 (365)
T KOG2391|consen 299 APLYKQILECYALDLAIEDAIYSLGKSLRD 328 (365)
T ss_pred chHHHHHHHhhhhhhHHHHHHHHHHHHHhc
Confidence 344555556665555555555566555543
No 388
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.37 E-value=1.6e+02 Score=27.30 Aligned_cols=97 Identities=7% Similarity=-0.046 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHcCCCCCC----HH
Q 010292 227 VTYNTLISVFGRLLLVDHMEAAFQEIK----DSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPD----TN 297 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~----~~ 297 (513)
..+-.....||+.||-+.|.+.+.+.. ..|.+.|+.-+-+-+..+. ...-+.+-++..+.|.+.|...+ -.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 445556667778888777777665544 3466666665555444332 22223344444555555554333 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 298 TYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+|..+- |....++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 444433 23345777887777666543
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.86 E-value=75 Score=23.21 Aligned_cols=22 Identities=5% Similarity=-0.041 Sum_probs=14.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 010292 197 LGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.......|+.++|...+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445556777777777776654
No 390
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.73 E-value=3.2e+02 Score=30.42 Aligned_cols=83 Identities=8% Similarity=0.002 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM---PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
-|-.++..+-+.+-.+.+.++-....+. +. |. ..+++++.+.....|.+-+|.+.+-.-.. .........-++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 3566777777778888888776665542 12 22 45677777888888887777665432111 111123455666
Q ss_pred HHHHhcCChh
Q 010292 339 CAYSKCSVTD 348 (513)
Q Consensus 339 ~~~~~~g~~~ 348 (513)
-.++.+|.++
T Consensus 1062 ivLfecg~l~ 1071 (1480)
T KOG4521|consen 1062 IVLFECGELE 1071 (1480)
T ss_pred HHHHhccchH
Confidence 6777777654
No 391
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.67 E-value=2.8e+02 Score=29.72 Aligned_cols=81 Identities=5% Similarity=-0.122 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH------hHHHH
Q 010292 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR------RKVNQ 494 (513)
Q Consensus 421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~------~~A~~ 494 (513)
.+..+++-....-..-+...+|.++..|++..+-+.-..+-..+...+ . ...-....++.|.+.+.. .-+++
T Consensus 611 ~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~-~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 611 QAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKS-R-VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccc-c-ceecHHHHHHHHHHhCccceeeeHHHHHH
Confidence 344444433332233467778888888887655433332222222211 1 112223455566555543 33455
Q ss_pred HHHHHHHCC
Q 010292 495 VLGLMCKNG 503 (513)
Q Consensus 495 ~~~~m~~~g 503 (513)
+|.++.+.-
T Consensus 689 l~~~aVdlA 697 (911)
T KOG2034|consen 689 LFEDAVDLA 697 (911)
T ss_pred HHHHHHHHH
Confidence 555555443
No 392
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.61 E-value=94 Score=26.14 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 010292 447 MYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~ 466 (513)
.|.+.|.+++|.++++...+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 44455555555555554443
No 393
>PRK09687 putative lyase; Provisional
Probab=56.33 E-value=1.6e+02 Score=26.92 Aligned_cols=234 Identities=9% Similarity=-0.050 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH----HHHHHHHHHHHcCCCCCCHHHH
Q 010292 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW----GKVEEIYQMMKAGPVMPDTNTY 299 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~t~ 299 (513)
+|....-..+.++...|. +.+...+..+.+. +|...-...+.++.+.|+. +++..++..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555555555555554 2222333333322 3555555555555555542 3455555555322 2454445
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010292 300 LLLLRGYAHSGNL-----PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374 (513)
Q Consensus 300 ~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 374 (513)
...+.++...+.. ..+.+.+..... .++..+-...+.++++.|+.+........+. ..+. +.....+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~--~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDEAAIPLLINLLK---DPNG--DVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhc---CCCH--HHHHHHH
Confidence 4555555444321 112222222221 2244444555666666554332221122221 1111 1111234
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010292 375 RVYAKED-CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 375 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 453 (513)
.++...+ ..+.+...+..++... +..+-...+.++.+.|+. .+...+-...+.+. .....+.+++..|.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D~----~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQDK----NEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 4444432 2334555555555322 233445566677777764 44444444443332 12356677777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
. +|...+.++.+.. ||..+-...+.++.
T Consensus 251 ~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 4 5777777777543 36555555555543
No 394
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.11 E-value=1.3e+02 Score=25.79 Aligned_cols=93 Identities=10% Similarity=-0.084 Sum_probs=60.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCccc---chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 010292 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 415 (513)
+-+.+.|+++.|..-+.....+.+..... ..|.--..++.+.+.++.|++-..+.++.+ |+....+-.-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 34778898888877777666665543321 112223456777888998888877777743 3333323333457778
Q ss_pred cCcHHHHHHHHHHHHhcC
Q 010292 416 CNAVDKLANFVKRAESAG 433 (513)
Q Consensus 416 ~~~~~~a~~~~~~m~~~~ 433 (513)
...++.|++=|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888888888888887654
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.64 E-value=65 Score=27.43 Aligned_cols=32 Identities=6% Similarity=-0.049 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 258 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666666666666677777777666666655
No 396
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=54.35 E-value=1.7e+02 Score=26.45 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT-----TVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 430 (513)
+..-|.+.|+++.|-.++--+........ ....-..++......++++-+.++.+-+.
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLK 247 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55566666666666655433322211111 11122234444455555555555555444
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.92 E-value=3.2e+02 Score=29.62 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467777777777777777777777764
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.69 E-value=29 Score=31.66 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010292 442 HSKMVMYASQRRVEEMESVLKEMENYKI 469 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~ 469 (513)
+.-|....+.||+++|+.+++|.++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4445555555555555555555555544
No 399
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.53 E-value=2.9e+02 Score=28.99 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=77.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
+.-++..-|+-++|..+.++|....... ....+| ++.-+|+-.|+-....+++.-... ...-|+.-+..+.-++.-.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~-t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMY-TLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHH-HHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEe
Confidence 4445566688888999999888754322 122333 456678888888777777766543 3344566666666677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHhHHHHHHHHHHH
Q 010292 452 RRVEEMESVLKEMENYKIDCSKKTFWIMY--YAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.+.+....+++-+.+. ..|-.+.=.++. -+|+-.|+ .+|..+++-|.+
T Consensus 585 ~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred cChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 8888887777766543 344443333333 33444443 677888877764
No 400
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=53.49 E-value=51 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC
Q 010292 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG 204 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 204 (513)
+.+.|..++..+......++..||++...+.+++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 4567777777776655557888888888777654
No 401
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.24 E-value=2.5e+02 Score=28.07 Aligned_cols=165 Identities=10% Similarity=0.055 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
|....-+++..+.....++-++.+-.+|...| -+...|-.++.+|... ..++-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44444556666666666666666666666544 2455566666666665 445555666655554322 3333333333
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCC--c---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHh
Q 010292 305 GYAHSGNLPRMEKIYELVKHHVDGK--E---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 379 (513)
-|-+ ++.+.+..+|..+...-++. + ..+|.-++..-. .+.+.........+.-...+.....+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555666665555442221 0 113333332211 11222222211121111111111111123455666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 010292 380 EDCLEEMEKSINDAFEH 396 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~ 396 (513)
..++.+|+++++.+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 77788888777766654
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.61 E-value=28 Score=31.74 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=20.5
Q ss_pred CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010292 223 SPSIVT-YNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258 (513)
Q Consensus 223 ~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 258 (513)
.||..+ ||..|....+.||+++|+.+++|.+..|+.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344443 345666666666666666666666665553
No 403
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.95 E-value=99 Score=31.66 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhH------HHHHHHHHHHCCCCCCHHHHHHH
Q 010292 195 ALLGAYMYNGLSDKCQSLFRDLKKEA-NISPSIVTYNTLISVFGRLLLVDH------MEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~~------A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+|+.+|..+|++-.+..+++.+.... |-+-=...||..|+.+.+.|.++- |.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999888876421 223334678888888888887642 333333333 45577888888
Q ss_pred HHHHHHccCHHHHHHHHHHHH
Q 010292 268 IAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~ 288 (513)
+.+-..--+-.-..-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655333333333444433
No 404
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.91 E-value=1e+02 Score=28.25 Aligned_cols=57 Identities=7% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010292 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (513)
++++.|.+.++.|.-+++.-+.-.+.+.=.+.+++.+++.+... ..-|..|+..||.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 45666666666666666665555555555666666666666552 2225555555553
No 405
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=51.86 E-value=51 Score=25.21 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 010292 207 DKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
+++.+.+.++++..|+.| |+..--++...+.....++. ..+ ...|++-+..||. |+++.....+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~l 71 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKDDSGLELNWKTFT---------GEYDDIYEAL 71 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCCCCCeEEeeeeec---------CchHHHHHHH
Confidence 566777777777777777 55444444444433322220 000 1123333333333 5555555544
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292 285 QMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
=++.. |...|...+...+.++...|
T Consensus 72 l~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 72 LKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 44433 45556666666666655444
No 406
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.00 E-value=86 Score=29.16 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcccHhhHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 405 IMRCIVSSYFRCNAVDKLANFVKRAESA---GWRLCRSLYH--SKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
....++....+.++.++|+++++++.+. --.|+...|. .....+...|+.+++.+++++..+
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445556666677788888888877532 2234555443 334555677888888888777666
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.62 E-value=2e+02 Score=26.23 Aligned_cols=124 Identities=13% Similarity=0.054 Sum_probs=81.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHccCHHHHHHHHHH----HHcCCCCCCHHHH
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY-------NYLIAGYMTAWMWGKVEEIYQM----MKAGPVMPDTNTY 299 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~t~ 299 (513)
.+.+...+.+++++|+..+.++...|+..|..+. ..+...|...|+....-+.... |.+-.-.......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3556677889999999999999999988776554 4566778888888766655543 3321111234555
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHHHhccCCCc-----HHHHHHHHHHHHhcCChhHHHHHH
Q 010292 300 LLLLRGYAHS-GNLPRMEKIYELVKHHVDGKE-----FPLIRAMICAYSKCSVTDRIKKIE 354 (513)
Q Consensus 300 ~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~ 354 (513)
.+|+..+-.. ..++..+++....++...... ...-..++..+.+.|.+.++...+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 6667666543 346777777766655322111 223346788899999998876654
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.25 E-value=1e+02 Score=24.82 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
.+.+.+++.|++++.. -..++..+.+.++.-.|.++|+++.+.+...+..|.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4556667778776554 445677777777778899999999888766666666666666666664
No 409
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.82 E-value=1.2e+02 Score=31.01 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=44.7
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChH------HHHHHHHHHHHhCCCCCCHHHHHH
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSD------KCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
+|+.+|...|++..+.++++.+...+-. -...||..|+.+.+.|.++ .|.+++++. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777777788887777777777654321 2456777777777777643 233333332 23456667766
Q ss_pred HHHHHH
Q 010292 232 LISVFG 237 (513)
Q Consensus 232 li~~~~ 237 (513)
|+.+-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 665543
No 410
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=49.76 E-value=56 Score=24.61 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010292 207 DKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (513)
++|.+.+.++++..|+.| |+..--++...+..-..+..+..- ...|++-|-.||. |+++.....+=
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~----~d~~~E~~~~T~~---------Ge~~~i~~alL 71 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIK----LDGNVEIDWYTFA---------GEYGDIYLALL 71 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccC----CCCCeEEEeeeec---------CchHHHHHHHH
Confidence 567777888877777877 654444444443332222211000 0122233333333 66665555443
Q ss_pred HHH--cCCCCCCHHHHHHHHHHHHhcC
Q 010292 286 MMK--AGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 286 ~m~--~~g~~p~~~t~~~ll~~~~~~g 310 (513)
++. ..|...|...+...+.++...|
T Consensus 72 kq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 72 KQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 322 4555666666666666665444
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.38 E-value=1.1e+02 Score=23.10 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 440 LYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
-|..|+..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777665
No 412
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=49.27 E-value=2.8e+02 Score=27.58 Aligned_cols=281 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (513)
+.|...++-..+. +...+...-.+.--..+.+....+|++..+. .|+...|+..|..|...-.......+...|
T Consensus 268 ~laqr~l~i~~~t---dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~ 341 (568)
T KOG2396|consen 268 DLAQRELEILSQT---DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTM 341 (568)
T ss_pred HHHHHHHHHHHHh---hccchhhhhhchhcchhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred H-----HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhc
Q 010292 253 K-----DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--GNLPRMEKIYELVKHH 325 (513)
Q Consensus 253 ~-----~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 325 (513)
. ..+......-+......+.......++...-..+...+++-|...|..-+....+. .---.-.+++......
T Consensus 342 ~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~ 421 (568)
T KOG2396|consen 342 CVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQ 421 (568)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q ss_pred cCCCcHHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010292 326 VDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404 (513)
Q Consensus 326 ~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (513)
-..+-...|++.. ..+.... ....++..+..+...+..+. -+.++..+-..|-+++|..++..+.. ..|+...
T Consensus 422 ~~s~~~~~w~s~~~~dsl~~~---~~~~Ii~a~~s~~~~~~~tl-~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~ 495 (568)
T KOG2396|consen 422 VCSELLISWASASEGDSLQED---TLDLIISALLSVIGADSVTL-KSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLD 495 (568)
T ss_pred hcchhHHHHHHHhhccchhHH---HHHHHHHHHHHhcCCceeeh-hHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHH
Q ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 405 IMRCIVSSYFRCN--AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 405 ~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.|..+|..=...- ++.-+.++++.|...-- -|+..|.-.+..-...|..+.+-.++.+...
T Consensus 496 l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 496 LFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 413
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.09 E-value=3e+02 Score=27.87 Aligned_cols=30 Identities=7% Similarity=-0.148 Sum_probs=18.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010292 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
..++.++. .|+.+.+++++++|...|..|.
T Consensus 250 ~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 250 FDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 33444433 3677777777777777776654
No 414
>PRK09857 putative transposase; Provisional
Probab=48.82 E-value=1.2e+02 Score=27.94 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
+.++.++-.++++.+.+. ++.......++..-+.+.|..+++.++.++|...|+.
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444444444444332 1222223333444444444444555555555555554
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.59 E-value=19 Score=28.23 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHcCCCCCC
Q 010292 276 MWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~ 295 (513)
.-..|..+|++|++.|-.||
T Consensus 110 sk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc
Confidence 33444455555555554444
No 416
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.19 E-value=81 Score=24.67 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 422 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
..++|..|...|+--. ...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455666655554432 2334455555556666666666664
No 417
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.12 E-value=3.2e+02 Score=28.84 Aligned_cols=19 Identities=21% Similarity=-0.167 Sum_probs=9.7
Q ss_pred cCHHHHHHHHHHHHcCCCC
Q 010292 275 WMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~ 293 (513)
++...+++++++|...|+.
T Consensus 259 ~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 4455555555555554443
No 418
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.01 E-value=1.1e+02 Score=25.37 Aligned_cols=37 Identities=5% Similarity=-0.000 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010292 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
++.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3334444555554444443333333333444444443
No 419
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=47.86 E-value=1.7e+02 Score=27.40 Aligned_cols=88 Identities=8% Similarity=-0.107 Sum_probs=51.3
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010292 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 244 (513)
-|.+.|.+++|++.|.......+.|.++|..-..+|.+..++..|..=.+...... ..-+..|.--+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHHH
Confidence 46778888888888887766555477777777788888777776665555544320 0111223333333333344555
Q ss_pred HHHHHHHHHH
Q 010292 245 MEAAFQEIKD 254 (513)
Q Consensus 245 A~~~~~~m~~ 254 (513)
|.+=++..++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 5554444444
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.60 E-value=1.1e+02 Score=22.19 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=6.0
Q ss_pred CChHHHHHHHHHHH
Q 010292 310 GNLPRMEKIYELVK 323 (513)
Q Consensus 310 g~~~~a~~~~~~~~ 323 (513)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444444
No 421
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.54 E-value=50 Score=33.89 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=27.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
+...-.-++..|.+.|-.+.|.++.+.+-.+ .-...-|..-+..+.+.|+...+..+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~---~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQR---LLKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555566677777777777777777766543 1123455666666666666655555544444
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.13 E-value=1.4e+02 Score=23.40 Aligned_cols=43 Identities=2% Similarity=-0.054 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010292 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
.+.++|..|..++........|......+...|++++|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444433334444444444444444444444443
No 423
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=46.70 E-value=2.4e+02 Score=26.16 Aligned_cols=126 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010292 190 IGTYNALLGAYMYNGL---SDKCQSLFRDLKKEANI---SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 263 (513)
...-..++...| |+ .++|.+.|++......- ..+......++....+.|+.+....+++..... .+..-
T Consensus 129 ~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~ 203 (324)
T PF11838_consen 129 RLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEE 203 (324)
T ss_dssp HHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHH
T ss_pred HHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHH
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHH
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL--PRMEKIYEL 321 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~~ 321 (513)
...++.+++...+.+...++++.....+..++.. ...++.++...+.. +.+.+.+..
T Consensus 204 k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 204 KRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHH
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.69 E-value=1.5e+02 Score=26.57 Aligned_cols=24 Identities=4% Similarity=-0.352 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
+...+..++.+.|+.+..+.+--+
T Consensus 220 ~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 220 VLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334444455555555555444333
No 425
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.55 E-value=42 Score=22.63 Aligned_cols=50 Identities=4% Similarity=-0.008 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 203 (513)
|....++.++..+++..-.++++..+++....|.-+..+|---++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44556677777777777777777777777776655566666656655553
No 426
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.28 E-value=1.3e+02 Score=22.76 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~ 393 (513)
.++..|...++.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3666777777888877777664
No 427
>PRK09687 putative lyase; Provisional
Probab=46.15 E-value=2.4e+02 Score=25.85 Aligned_cols=145 Identities=8% Similarity=-0.035 Sum_probs=65.1
Q ss_pred CHhHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCC
Q 010292 189 TIGTYNALLGAYMYNGLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-----DHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p 259 (513)
+...-...+.++..-|+. +++...+..+..+ .++..+-...+.+++..+.- ..+...+..... .+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~ 140 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DK 140 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CC
Confidence 334444444555555542 3455555555322 35555555555555444321 122233322222 23
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
+..+--..+.++.+.|+ +++...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44455555555555554 3444544444442 34444444455554432 12234444443332 23444455555
Q ss_pred HHHHhcCC
Q 010292 339 CAYSKCSV 346 (513)
Q Consensus 339 ~~~~~~g~ 346 (513)
.++++.|+
T Consensus 214 ~aLg~~~~ 221 (280)
T PRK09687 214 IGLALRKD 221 (280)
T ss_pred HHHHccCC
Confidence 56665554
No 428
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.51 E-value=2.4e+02 Score=25.75 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH----h
Q 010292 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-------NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA----S 450 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~ 450 (513)
+..+|..+|.+..+.|.... ......+-..|... .+...|...+.++...+ +......+...|. -
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 56667777766666655432 11112222222222 12235777777776665 2223333333332 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHhHHHHHHHHHHHCCCCC
Q 010292 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG---------------QRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p 506 (513)
..+.++|...|....+.|. ......+- .+...| +...|...+......|...
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 4477788888888877774 22222222 333333 6777777777777766554
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.39 E-value=1.3e+02 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=17.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666667777777777777766655
No 430
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.17 E-value=1.1e+02 Score=21.92 Aligned_cols=42 Identities=2% Similarity=-0.035 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
++|+-....|+..|..+|.++++.+.-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444445555555555555544444444444444444443
No 431
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.01 E-value=1.3e+02 Score=22.68 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
.-++|..+.+|+...++ ....+--.-+..+.+.|++++| +..-.....||...|-+|-. .+.|..+++...
T Consensus 21 cH~EA~tIa~wL~~~~~----~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE----MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTTT----THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 56678888888877542 1222223334556777888877 33333333356666665543 566777777777
Q ss_pred HHHHHH
Q 010292 213 FRDLKK 218 (513)
Q Consensus 213 ~~~m~~ 218 (513)
+.++..
T Consensus 92 l~rla~ 97 (116)
T PF09477_consen 92 LTRLAS 97 (116)
T ss_dssp HHHHCT
T ss_pred HHHHHh
Confidence 776654
No 432
>PRK09857 putative transposase; Provisional
Probab=44.17 E-value=2e+02 Score=26.48 Aligned_cols=64 Identities=8% Similarity=-0.067 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 293 (513)
+..++....+.++.++..++++.+.+. ........-++..-+.+.|.-+++.++.++|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344454445555555555555555543 1112222223333444444444455555555555544
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.77 E-value=1.6e+02 Score=27.05 Aligned_cols=58 Identities=10% Similarity=0.315 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010292 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
.++++.|... ++.|.-.++.-+.-.+.+.=.+.+++.+++.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 5778888865 8999999988888888888999999999999985 45558888888875
No 434
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.31 E-value=1.6e+02 Score=23.07 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Q 010292 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK 185 (513)
Q Consensus 150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (513)
+.+.|++.+...-+++|-+.+++..|..+|+-++.+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 457778888888888888888888888888877654
No 435
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=42.65 E-value=4.6e+02 Score=28.14 Aligned_cols=33 Identities=9% Similarity=-0.135 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
...+..++..+. .|+..+++++++++...|+..
T Consensus 246 ~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 246 QTYMVRLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 333444444333 367777777777777766543
No 436
>PRK12798 chemotaxis protein; Reviewed
Probab=41.62 E-value=3.4e+02 Score=26.36 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=50.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCChH
Q 010292 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDT----NTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~ 313 (513)
.|+..+|.+.|..+.-.-..+....|-.|+.+-.- ..+..+|+++|++..- .-|.+ ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57778888888777766666677777777765544 3467788888877654 22433 22233344456667776
Q ss_pred HHHHHHHH
Q 010292 314 RMEKIYEL 321 (513)
Q Consensus 314 ~a~~~~~~ 321 (513)
++..+-..
T Consensus 203 rf~~la~~ 210 (421)
T PRK12798 203 KFEALARN 210 (421)
T ss_pred HHHHHHHH
Confidence 66555443
No 437
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.26 E-value=3.4e+02 Score=27.48 Aligned_cols=87 Identities=7% Similarity=0.090 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-c------------ccHhhHHHHHHHHH
Q 010292 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-R------------LCRSLYHSKMVMYA 449 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~------------~~~~~~~~li~~~~ 449 (513)
.++..+.+....+.....-+......++.. ..|++..|..+++.+...|- . ++......+++++.
T Consensus 180 ~~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~ 257 (509)
T PRK14958 180 PLQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA 257 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 344445555554433222233334444433 36889999999887665431 1 11222233344433
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 010292 450 SQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
.|+.+.++.++++|...|..|.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 -AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred -cCCHHHHHHHHHHHHHcCCCHH
Confidence 4778888888888888886654
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.19 E-value=2.8e+02 Score=25.34 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=14.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
+...|++.++.+.+.++.++..+
T Consensus 121 ~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 121 IAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Confidence 55666666666666666555444
No 439
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.05 E-value=1.6e+02 Score=23.70 Aligned_cols=36 Identities=6% Similarity=0.178 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010292 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344555555555555444444444444455555553
No 440
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.57 E-value=2e+02 Score=29.14 Aligned_cols=100 Identities=5% Similarity=-0.069 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
.|+...|.+.+...........++. .-.|.+...+.|....|..++....... .-.+-++-.+..+|.-..+++.|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~-~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVP-LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhccc-HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 4777777777766655433322332 2235555666777777888777665544 2234455667777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH
Q 010292 460 VLKEMENYKIDCSKKTFWIMYYA 482 (513)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~ 482 (513)
.|++..+.. +.+..+-+.|...
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHHH
Confidence 888887765 3344444544443
No 441
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.46 E-value=4.5e+02 Score=27.39 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=59.1
Q ss_pred hHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH
Q 010292 121 YAFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199 (513)
Q Consensus 121 ~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 199 (513)
..|..+++.+.. +.+.-.+++..+.... .....+..+++++...|-.+.+.-+.+.+....+.+...-..++..
T Consensus 347 ~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-----~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l 421 (618)
T PF01347_consen 347 SKFSRLVRLLRTLSYEDLEELYKQLKSKS-----KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASL 421 (618)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHTTS--------HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 457788888866 4455556666553321 2467788889999999988888777777777555444443344333
Q ss_pred HHHc-CChHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc
Q 010292 200 YMYN-GLSDKCQSLFRDLKKEANISPSI-------VTYNTLISVFGRL 239 (513)
Q Consensus 200 ~~~~-g~~~~A~~~~~~m~~~~g~~p~~-------~~~~~li~~~~~~ 239 (513)
.... .=-.+.++.+.+|.+......+. .++..++.-+|..
T Consensus 422 ~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 422 PFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 3333 22334444444444321122232 2455666666665
No 442
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.35 E-value=2.7e+02 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHH
Q 010292 294 PDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 294 p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
-|...|..++.+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 46677788888887777665543
No 443
>PLN03025 replication factor C subunit; Provisional
Probab=40.00 E-value=2.9e+02 Score=25.78 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCCCHHHHHHHH
Q 010292 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY------------KIDCSKKTFWIMY 480 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------~~~p~~~~~~~li 480 (513)
+....+-+....+-..+.+.|+..+......++.... |++..|...++..... .-.+.......++
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i 232 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIV 232 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHH
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010292 481 YAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
.+... ++.+.|...+.+|...|+.|
T Consensus 233 ~~~~~-~~~~~a~~~l~~ll~~g~~~ 257 (319)
T PLN03025 233 RNCLK-GKFDDACDGLKQLYDLGYSP 257 (319)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 444
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.87 E-value=3.6e+02 Score=28.04 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-------------ccHhhHHHHHHHH
Q 010292 383 LEEMEKSINDAFE-HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-------------LCRSLYHSKMVMY 448 (513)
Q Consensus 383 ~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~~~~~~li~~~ 448 (513)
.++..+.+.+... .|... +...+..++. ...|++..++.++++....+.. .+......+++++
T Consensus 185 ~eei~~~L~~i~~~egi~i-e~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL 261 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPA-EPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL 261 (618)
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455555555444 34333 3344555544 3468999999988876544321 1222233344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC
Q 010292 449 ASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
. .|+...++.+++++.+.|..+
T Consensus 262 ~-~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 262 A-QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCH
Confidence 4 478888888888888887653
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.75 E-value=3.5e+02 Score=26.31 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh--cC-----CcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 407 RCIVSSYFRCNAVDKLANFVKRAES--AG-----WRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~m~~--~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
-.|++.++-.|++..|+++++.+.- .+ ....+.+|-.+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888886531 11 11234445566667778888888888888765
No 446
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=39.69 E-value=1.1e+02 Score=26.38 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCcc-cHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 422 LANFVKRAESAGWRL-CRSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 422 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
-.++++...+.|++- -+..|..+|+--.-.-+.++..+++..+
T Consensus 191 f~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 191 FEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 344444444444331 1234555554444444555555555544
No 447
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.23 E-value=4.1e+02 Score=27.70 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=16.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010292 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
.++.++.. |+...+++++++|...|..+
T Consensus 256 ~LldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 256 RLIDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 34444333 56666677776666666544
No 448
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=38.97 E-value=73 Score=26.13 Aligned_cols=21 Identities=19% Similarity=-0.035 Sum_probs=10.5
Q ss_pred HHHHHH-cCChHHHHHHHHHHH
Q 010292 125 ELMKQL-GSRPRLALEVLNWRR 145 (513)
Q Consensus 125 ~~l~~~-~~~~~~a~~~~~~~~ 145 (513)
.+..++ .++++.|.+++..+.
T Consensus 96 ~L~~aL~~~d~~~A~~Ih~~L~ 117 (157)
T PF07304_consen 96 QLAQALQARDYDAADEIHVDLM 117 (157)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 333444 356666666665543
No 449
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=38.38 E-value=1e+02 Score=21.78 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=8.2
Q ss_pred HHHHHHHHCCCCCCC
Q 010292 494 QVLGLMCKNGYDVPV 508 (513)
Q Consensus 494 ~~~~~m~~~g~~p~~ 508 (513)
++++.+.+.|..++.
T Consensus 73 ~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 73 EIVKLLLEHGADVNI 87 (89)
T ss_dssp HHHHHHHHTTT-TTS
T ss_pred HHHHHHHHcCCCCCC
Confidence 355555666666654
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.73 E-value=2.5e+02 Score=30.12 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=38.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
..+|+++.|++.-..+ -|..+|..|.....+.|+.+-|+..|+..+. |..|--.|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 3455666555543332 2556667777666666776666666665543 333333344455555544
Q ss_pred HHHHHH
Q 010292 317 KIYELV 322 (513)
Q Consensus 317 ~~~~~~ 322 (513)
++.+..
T Consensus 719 Km~~ia 724 (1202)
T KOG0292|consen 719 KMMKIA 724 (1202)
T ss_pred HHHHHH
Confidence 444433
No 451
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.63 E-value=4e+02 Score=26.05 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=12.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH
Q 010292 240 LLVDHMEAAFQEIKDSNLSPNVF 262 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~ 262 (513)
++.+.|...+..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555555555555544433
No 452
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.15 E-value=2.5e+02 Score=27.98 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=106.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHH-----HHHccCHHHHHHHHHHHHcCCCCCCH---HHHH
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT--YNYLIAG-----YMTAWMWGKVEEIYQMMKAGPVMPDT---NTYL 300 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~ 300 (513)
+.+...++.|+.+- ++.+.+.|..++... ....+.. .+..|.. ++.+.+.+.|..++. ...+
T Consensus 37 t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCc
Confidence 45555667777654 444456677666432 2233444 4444443 344445556655432 2233
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHhccCCCcHHH--HHHHHHHHHhcC--ChhHHHHHHHHHHhCCC----CCcccchHH
Q 010292 301 LLLRGYA-HSGNLPRMEKIYELVKHHVDGKEFPL--IRAMICAYSKCS--VTDRIKKIEALMRLIPE----KEYRPWLNV 371 (513)
Q Consensus 301 ~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g--~~~~a~~~~~~~~~~~~----~~~~~~~~~ 371 (513)
.|..+.. ..|+.+-+.. +.+.|..++... -...+...+..| +.+ +.+.+.+... .+....
T Consensus 109 pL~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~--- 177 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGY--- 177 (480)
T ss_pred hhhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCC---
Confidence 4443332 5666554444 444554443221 123445555566 444 3333332221 111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH---hhH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT-------TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR---SLY 441 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~ 441 (513)
.-+...+..|+.+-+.-+++ .|..+. ....+...+...+..|+ ...++++.+.+.|..++. ...
T Consensus 178 tpL~~A~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~ 251 (480)
T PHA03100 178 TPLHIAVEKGNIDVIKFLLD----NGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGF 251 (480)
T ss_pred CHHHHHHHhCCHHHHHHHHH----cCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCC
Confidence 24556667777666555443 332221 11111334444455555 112334444455655432 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW--IMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
+.| ...+..|+.+ +++.+.+.|..++..... +-+....+.++. ++++.+.+.|..
T Consensus 252 TpL-~~A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~----~iv~~Ll~~g~~ 308 (480)
T PHA03100 252 TPL-HYAVYNNNPE----FVKYLLDLGANPNLVNKYGDTPLHIAILNNNK----EIFKLLLNNGPS 308 (480)
T ss_pred CHH-HHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCH----HHHHHHHhcCCC
Confidence 333 3444566644 444445555444332111 223333445554 345555555653
No 453
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=36.76 E-value=4.3e+02 Score=27.92 Aligned_cols=86 Identities=5% Similarity=0.079 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---c----------ccHhhHHHHHHHHH
Q 010292 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW---R----------LCRSLYHSKMVMYA 449 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~----------~~~~~~~~li~~~~ 449 (513)
.++..+.+....+.....-+...+..++... .|++..++.+++.+...|- . .+......+++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4566666666665433333344455555443 6899999999988765431 1 12222334444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC
Q 010292 450 SQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p 471 (513)
.++...++.+++++...|+.+
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCH
Confidence 478888888888888888643
No 454
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.58 E-value=1.6e+02 Score=21.19 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 424 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
++|+-....|+..|...|.++++.+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777666666655556666666666654
No 455
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.38 E-value=4.7e+02 Score=26.46 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 010292 195 ALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 44555666666666666666553
No 456
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.57 E-value=5.3e+02 Score=26.83 Aligned_cols=48 Identities=4% Similarity=-0.038 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 439 SLYHSKMVMYASQRRVEEME-SVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
.....++..|...+.--+.. ..|..+.+ ..|+...+..+........+
T Consensus 558 ~v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~~P~~~~l~~i~~~l~~E~~ 606 (618)
T PF01347_consen 558 KVREILLPIFMNTTEDPEVRIAAYLILMR--CNPSPSVLQRIAQSLWNEPS 606 (618)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHHHHHH--T---HHHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHh--cCCCHHHHHHHHHHHhhCch
Confidence 33455555555544433321 12222222 23666666666555544333
No 457
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.37 E-value=97 Score=23.59 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=19.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010292 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333333344455555555544444444444444444554443
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.34 E-value=1.5e+02 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=8.3
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 010292 197 LGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m 216 (513)
+..|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444443
No 459
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.32 E-value=3.9e+02 Score=27.03 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh------------HHHHHHHH
Q 010292 382 CLEEMEKSINDAFE-HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL------------YHSKMVMY 448 (513)
Q Consensus 382 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~li~~~ 448 (513)
..++..+++....+ .|... +......++.. ..|++..+...++.+...+-..+... ...+++++
T Consensus 176 s~~el~~~L~~i~~~egi~i-~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREA-EPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34556666666554 34433 33445445433 36889999988888765432222211 22344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC
Q 010292 449 ASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
..++.++|+.+++++...|..|
T Consensus 253 -~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 253 -AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCH
Confidence 4588888988888888888544
No 460
>COG0819 TenA Putative transcription activator [Transcription]
Probab=35.20 E-value=2.5e+02 Score=24.61 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred HCCCCCCHHHHHHHHHHHHHccCHHHHH-----------HHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010292 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVE-----------EIYQMMKAGPVMPDTNTYLLLLRGYAH 308 (513)
Q Consensus 254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~-----------~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (513)
+....|....|...|...+..|++.+.. ++...+...+.......|...++.|+.
T Consensus 102 ~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s 167 (218)
T COG0819 102 KTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYAS 167 (218)
T ss_pred hcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCC
Confidence 3334455555555555555555544322 122233333332345567777777754
No 461
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.12 E-value=3.8e+02 Score=25.08 Aligned_cols=118 Identities=10% Similarity=0.040 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---ccCHHHHHHH
Q 010292 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT---AWMWGKVEEI 283 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~ 283 (513)
+.-+.++++..+. .+-+....-.+|..+.+..+.+...+.++++..... -+...|-..|..... .-.++.+.++
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4445555555543 223444555555666666666666666666665422 144555555544333 1134444444
Q ss_pred HHHHHc------CCC----CCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010292 284 YQMMKA------GPV----MPD-------TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 284 ~~~m~~------~g~----~p~-------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
|.+-.+ .|. .+- ...+.-+...+...|-.+.|..+++.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443221 111 011 12333334445678889999999988887544
No 462
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.06 E-value=1.7e+02 Score=23.38 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 171 NVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
++.+.+.+++.+.+...| ......-|.-++.+.+++++++.+.+.+.+. +||..--..|
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---e~~n~Qa~~L 110 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---EPNNRQALEL 110 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---CCCcHHHHHH
No 463
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.05 E-value=4.9e+02 Score=26.33 Aligned_cols=21 Identities=10% Similarity=-0.019 Sum_probs=13.8
Q ss_pred cCHHHHHHHHHHHHcCCCCCC
Q 010292 275 WMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p~ 295 (513)
|+.++|+.+++++...|..|.
T Consensus 271 ~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 271 RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 666777777777766665544
No 464
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.83 E-value=3.7e+02 Score=24.78 Aligned_cols=104 Identities=9% Similarity=0.007 Sum_probs=51.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhc
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHS 309 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~ 309 (513)
++....+.+++......++.+. ....-...+..+...|++..|++++.+..+. +.. .......|-
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~-~~~c~~~L~------ 170 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELK-GYSCVRHLS------ 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc-cchHHHHHh------
Confidence 4445555555555555555554 2333445566666778888888777766541 000 001111111
Q ss_pred CChHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHhcCChh
Q 010292 310 GNLPRMEKIYELVKH-----HVDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 310 g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
.++++-....+.+.+ --..-|...|..++.+|.-.|+.+
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhH
Confidence 112222222222221 111347778888888888777554
No 465
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.72 E-value=5.8e+02 Score=27.07 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
........|..+...|++++|-...-.|... +..-|..-+..+...++......+ +... .-..+...|..++.
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~-~~rL~p~vYemvLv 463 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELDQLTDIAPY---LPTG-PPRLKPLVYEMVLV 463 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhccccccchhhcc---CCCC-CcccCchHHHHHHH
Confidence 4567788888889999999998888888764 667777777777777765443332 3321 11234456666666
Q ss_pred HHHhcCChhHHHHHHHHHHHCC------------C-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSN------------L-------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g------------~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.|.. .+.. .+++...+.. . .-+...-..|...|...+++..|++++-..++
T Consensus 464 e~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 464 EFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 6655 2211 1222221110 0 01222233366677777777777777655543
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.58 E-value=4.9e+02 Score=26.14 Aligned_cols=168 Identities=10% Similarity=-0.006 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
.|....-+++..+..+-.+.-++.+-.+|..-| -+...|..++++|... ..+.-..+|+++.+..+ .|+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 466677788899998888899999999999855 5788999999999988 56778889999888755 3445455666
Q ss_pred HHHHhcCChhHHHHHHHH-HHhCCCCCcccch---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010292 339 CAYSKCSVTDRIKKIEAL-MRLIPEKEYRPWL---NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (513)
.-|-+ ++.+.+...+.. +.+..++...+.+ ..-++.. -..+.+....+..++............+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66666 544444443321 1222221111100 0011111 134566666666666654433333444555667788
Q ss_pred hcCcHHHHHHHHHHHHhcC
Q 010292 415 RCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 415 ~~~~~~~a~~~~~~m~~~~ 433 (513)
...++++|++++..+.++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 8889999999999776654
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.21 E-value=2.7e+02 Score=23.13 Aligned_cols=40 Identities=3% Similarity=-0.195 Sum_probs=19.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
..++.-.|.++++.+.+.+...+..|--.-|..+.+.|-+
T Consensus 37 ~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 37 LQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred hcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3344445555555555555444444444444445554433
No 468
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.16 E-value=1.5e+02 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=11.8
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccC
Q 010292 163 IKFAGRINNVDLAADLFAEAANKHL 187 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~ 187 (513)
|+.+.++...++|+++++.|.++|-
T Consensus 68 iD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 3334444445555555555544443
No 469
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=33.89 E-value=3.9e+02 Score=24.81 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292 230 NTLISVFGRLLLVDHMEAAFQEIKDSNL--SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
+-++.-..+.+..++...+|+++...=+ ..| ..-|.++..+.+.+..++-..+++.+.
T Consensus 22 sr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~-~~g~~vvq~~l~~~~~~~~~~i~~~~~ 81 (322)
T cd07920 22 SRFLQQKLEEATPEEKELIFDEILPHVVELMVD-PFGNYVIQKLFEHGTEEQRLQLLEKIL 81 (322)
T ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcC-ccccHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4455666666777777777777542100 001 112344445555555555555555443
No 470
>PRK10941 hypothetical protein; Provisional
Probab=33.83 E-value=3.7e+02 Score=24.48 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=25.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
+-.+|.+.++++.|..+.+.+-.+.+.+...+- --.-.|.+.|.+..|..=++..++.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~R--DRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIR--DRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 333444455555544444444444443332221 1222345555555555555444443
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.57 E-value=2.1e+02 Score=21.67 Aligned_cols=79 Identities=10% Similarity=-0.015 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 010292 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 205 ~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
..++|..|.+.+... +. -...+--+-+..+.+.|++++|. ..- .....||...|-+|-. .+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~--~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEAL--LLP--QCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHH--HHH--TTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHH--Hhc--ccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 456666666666653 21 12222223334455666666661 111 1123456666655433 3556666666666
Q ss_pred HHHHcCC
Q 010292 285 QMMKAGP 291 (513)
Q Consensus 285 ~~m~~~g 291 (513)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6665544
No 472
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=33.53 E-value=2.9e+02 Score=23.17 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=7.1
Q ss_pred HHHHHHHHcCCCCCC
Q 010292 281 EEIYQMMKAGPVMPD 295 (513)
Q Consensus 281 ~~~~~~m~~~g~~p~ 295 (513)
.++...+.+.++.++
T Consensus 38 ~ELr~kL~k~~~~~~ 52 (174)
T COG2137 38 KELRRKLAKKEFSEE 52 (174)
T ss_pred HHHHHHHHhccCCHH
Confidence 344455555554433
No 473
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.45 E-value=3.6e+02 Score=24.32 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=17.8
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHh
Q 010292 159 YTKGIKFAGRINNVDLAADLFAEAAN 184 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (513)
.+.++..+.+.+....|.++.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 46677777777777777777766643
No 474
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.24 E-value=3.4e+02 Score=23.86 Aligned_cols=20 Identities=5% Similarity=-0.092 Sum_probs=9.6
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 010292 233 ISVFGRLLLVDHMEAAFQEI 252 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m 252 (513)
|....+.|+++.|++....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33344555555555544444
No 475
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=33.17 E-value=5.4e+02 Score=26.24 Aligned_cols=186 Identities=9% Similarity=-0.012 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010292 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374 (513)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 374 (513)
+..+|..-+.--...|+.+.+.-+|++..-. +..-...|-..+.-....|+.+-+..+...-.++..+..... . ++-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i-~-L~~ 372 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII-H-LLE 372 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH-H-HHH
Confidence 4677888888888889988888888876542 111222344444444444766666555444333333332221 1 222
Q ss_pred HHH-HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHH---HHHHHHHhcCCcccHhhHHHHHHH---
Q 010292 375 RVY-AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA---NFVKRAESAGWRLCRSLYHSKMVM--- 447 (513)
Q Consensus 375 ~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~~~~~~~~~li~~--- 447 (513)
..+ -..|+.+.|..+++.....- |.....-..=+..-.+.|+.+.+. +++..... |.. +..+.+.+.--
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHH
Confidence 233 34579999999998887753 332222222344455677777777 33333322 211 22222222222
Q ss_pred --HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 448 --YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 448 --~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
+.-.++.+.|..++.++.+.. +++...|..+++.+..++.
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCCc
Confidence 234788999999999998764 7788888888888776663
No 476
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.16 E-value=1.8e+02 Score=20.60 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010292 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
++++.+.++.-.++|+++++-|..+| ..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 35666777777778888887777776 44443
No 477
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.99 E-value=5.2e+02 Score=25.93 Aligned_cols=100 Identities=10% Similarity=-0.062 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010292 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 208 ~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
+..+.+....+..|+..+......++.. ..|++..|+.++++....+ ....++..+ .+++
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V-------------~~~l--- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKI-------------RKMI--- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHH-------------HHHh---
Confidence 4444455544434666666666555533 3577888888887765321 011122221 1111
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcH
Q 010292 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331 (513)
Q Consensus 288 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 331 (513)
|+ .+...+..++.++...+....|..+++++.+.|..|..
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 32 25555566666655555556777777777777765543
No 478
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.83 E-value=86 Score=24.13 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=23.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 44444445444555666666666555555555444445555555543
No 479
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.70 E-value=1.2e+03 Score=30.11 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
.+.+.....++.+.|......|.-.-+|++-.. -.. +.....|.+.|.+++|..+|++...+
T Consensus 2450 ~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~----~~e--T~~a~s~eQ~G~~e~AQ~lyekaq~K 2511 (3550)
T KOG0889|consen 2450 TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAK----FPE--TMVALSYEQLGFWEEAQSLYEKAQVK 2511 (3550)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhc----cHH--HHHHHHHHHhhhHHHHhhHHHHHHHH
Confidence 456777888888888877766655555543221 122 23334577888999999998876543
No 480
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.49 E-value=2e+02 Score=21.93 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010292 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
+|+.+-+|...++|+++++-|.+.| ..+..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e 96 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPE 96 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4566667777777777777777776 34443
No 481
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.42 E-value=5.4e+02 Score=26.02 Aligned_cols=31 Identities=3% Similarity=-0.209 Sum_probs=19.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
...+++++ ..++.++|+.+++++...|..|.
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33344444 44777888888888777775443
No 482
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=31.80 E-value=6.1e+02 Score=26.41 Aligned_cols=158 Identities=10% Similarity=-0.044 Sum_probs=79.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHhcccCCHHHHHHHHHHHHhccC--C-C--HhHHHHH-HH
Q 010292 128 KQLGSRPRLALEVLNWRRRQAGYGTPMT---KEEYTKGIKFAGRINNVDLAADLFAEAANKHL--K-T--IGTYNAL-LG 198 (513)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~-~--~~~~~~l-i~ 198 (513)
-.-..+.+.|...++........ ...+ -.+...++..+.+.+... |...+++..+.-- + + ...|..+ +.
T Consensus 70 ~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~ 147 (608)
T PF10345_consen 70 LEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQ 147 (608)
T ss_pred HHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 33356777777777755433221 1111 111234455666665555 7777776554211 1 1 2223333 22
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCC---------CCCHHHHH
Q 010292 199 AYMYNGLSDKCQSLFRDLKKEANISPS--IVTYNTLISVFG--RLLLVDHMEAAFQEIKDSNL---------SPNVFTYN 265 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~ 265 (513)
.+...++...|++.++.+........| ..++-.++.+.. +.+..+++.+.++++..... .|-..+|.
T Consensus 148 l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ 227 (608)
T PF10345_consen 148 LALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALF 227 (608)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHH
Confidence 333346888888888777654322223 334444444433 34555666666666633211 23456666
Q ss_pred HHHHHHH--HccCHHHHHHHHHHH
Q 010292 266 YLIAGYM--TAWMWGKVEEIYQMM 287 (513)
Q Consensus 266 ~li~~~~--~~g~~~~a~~~~~~m 287 (513)
.++..++ ..|+++.+.+.++++
T Consensus 228 lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 228 LLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665544 466666666555444
No 483
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=31.79 E-value=2.4e+02 Score=21.69 Aligned_cols=22 Identities=0% Similarity=0.012 Sum_probs=10.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHH
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQ 285 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~ 285 (513)
+...+..+...|+++.|.++++
T Consensus 73 ~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 73 LEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3334444445555555555544
No 484
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.68 E-value=2.2e+02 Score=22.95 Aligned_cols=60 Identities=15% Similarity=0.004 Sum_probs=36.5
Q ss_pred HHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH
Q 010292 393 AFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 454 (513)
+.+.|...+... ..++..+... +..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 8 l~~~glr~T~qR--~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR--LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH--HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344454444332 3455555554 35667888888888777666666655566666666654
No 485
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.39 E-value=5.5e+02 Score=25.75 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=22.2
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010292 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
+...+..+++.....+....|+.++++|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 334445555555554555678888888888776543
No 486
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.19 E-value=4.4e+02 Score=26.79 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC------------CCCCHHHHHHHHHHHHhcCC----hHHHHH
Q 010292 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP------------VMPDTNTYLLLLRGYAHSGN----LPRMEK 317 (513)
Q Consensus 254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------------~~p~~~t~~~ll~~~~~~g~----~~~a~~ 317 (513)
+....|-.-+--.+-..|...|++++|.++--....+= +-.....|..++......++ -..--.
T Consensus 52 d~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~ 131 (926)
T COG5116 52 DDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDF 131 (926)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHH
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
+++.|.+.....+..-|-.=|.+++- ..+-+...+..-.+.++.++.-...|..-...|-..+..+.+-+..-..
T Consensus 132 v~e~i~~kc~~~se~~~~lgIa~eg~-----rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~ 206 (926)
T COG5116 132 VLEVIGAKCVDDSEIGYLLGIAAEGL-----RLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGK 206 (926)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 433 (513)
..|. |-.++.++...++.+.|.++++++.+.+
T Consensus 207 ~~pd----yf~v~k~vv~LnDa~~a~~L~~kL~~en 238 (926)
T COG5116 207 PKPD----YFYVIKAVVYLNDAEKAKALIEKLVKEN 238 (926)
T ss_pred CCCc----EEEEeEEEEEeccHHHHHHHHHHHHhhh
No 487
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=31.18 E-value=3.7e+02 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHH
Q 010292 478 IMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.+...+...++-+...+.+.+..
T Consensus 556 ~la~~f~~~~~a~vl~~al~e~l 578 (824)
T PRK07764 556 GLARRFASPGNAEVLVTALAEEL 578 (824)
T ss_pred HHHHHHhcccchHHHHHHHHHHh
Confidence 34555555555555555555543
No 488
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.41 E-value=1.1e+03 Score=29.00 Aligned_cols=283 Identities=8% Similarity=-0.013 Sum_probs=151.2
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 010292 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGR 238 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~ 238 (513)
-.+...|+..+++|...-+...-.. +. +...-|......|++..|...|+.+.+. .|+ ..+++-+++..-.
T Consensus 1424 fllq~lY~~i~dpDgV~Gv~~~r~a----~~-sl~~qil~~e~~g~~~da~~Cye~~~q~---~p~~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1424 FLLQNLYGSIHDPDGVEGVSARRFA----DP-SLYQQILEHEASGNWADAAACYERLIQK---DPDKEKHHSGVLKSMLA 1495 (2382)
T ss_pred HHHHHHHHhcCCcchhhhHHHHhhc----Cc-cHHHHHHHHHhhccHHHHHHHHHHhhcC---CCccccchhhHHHhhhc
Confidence 3444477778887777666663111 22 2333445567789999999999999864 455 6788888888778
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH--HHHHHhcC--ChH
Q 010292 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL--LRGYAHSG--NLP 313 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--l~~~~~~g--~~~ 313 (513)
.|.++.++...+....+ ..+....|+.+ +.+--+.+++|....... .. +..+|... .....+.. +.-
T Consensus 1496 ~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~ 1567 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEI 1567 (2382)
T ss_pred ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh--cc-----cccchhHHHHHHHHHhhcccchh
Confidence 88888888876666543 22333344433 345567888888777665 21 22233322 22222222 211
Q ss_pred HHHHHHHHHHhccC--------C-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CcccchHH-HHHHHHH
Q 010292 314 RMEKIYELVKHHVD--------G-KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-----EYRPWLNV-LLIRVYA 378 (513)
Q Consensus 314 ~a~~~~~~~~~~~~--------~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~-~li~~~~ 378 (513)
.-.+.++.+.+.-+ . .-...|..++....-. +.....+.+...... +...|.|. .....+.
T Consensus 1568 ~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~ 1643 (2382)
T KOG0890|consen 1568 ATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSF 1643 (2382)
T ss_pred hHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHhhccCccccccccchhHHHHHHHhchhH
Confidence 12223333332211 1 1123344444433322 111111111111111 11123221 1122222
Q ss_pred hcCCHHHHHHHHHH-HH----hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010292 379 KEDCLEEMEKSIND-AF----EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 379 ~~~~~~~a~~~~~~-~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 453 (513)
+ ..+-+--+++ +. ..+.......+|-...+.....|+++.|...+-...+.+ .| ..+--...-+-..|+
T Consensus 1644 ~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd 1717 (2382)
T KOG0890|consen 1644 R---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGD 1717 (2382)
T ss_pred H---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhcc
Confidence 2 1111111111 11 112223345678888888888999999998888777666 22 344455666778999
Q ss_pred HHHHHHHHHHHHhCC
Q 010292 454 VEEMESVLKEMENYK 468 (513)
Q Consensus 454 ~~~A~~~~~~m~~~~ 468 (513)
-..|+.++++-.+..
T Consensus 1718 ~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1718 ELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999888764
No 489
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=30.29 E-value=4.5e+02 Score=24.40 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=28.8
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292 160 TKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
+.++.-+.+.+..++...+|+.+...-.. ....-+.+++.+.+.+..+.-..+++.+.
T Consensus 22 sr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~ 81 (322)
T cd07920 22 SRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKIL 81 (322)
T ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555666666666664432111 11123445555666665555555555554
No 490
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.00 E-value=4e+02 Score=23.70 Aligned_cols=39 Identities=15% Similarity=-0.022 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010292 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332 (513)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (513)
.|.......++..|. .+++++|.+++..+.+.|+.|...
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 467777777777664 467888888888888888877543
No 491
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.57 E-value=5.1e+02 Score=24.81 Aligned_cols=128 Identities=12% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
.|....++-.+-.++...|+.+.|.+++++..-.- ..++......+........+ ++ .+...-|...|-+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~---e~~~~~~F~~~~~~~~~g~~-----rL--~~~~~eNR~ffla 105 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF---ERAFHPSFSPFRSNLTSGNC-----RL--DYRRPENRQFFLA 105 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHHHHHHhhhhhcccccCcc-----cc--CCccccchHHHHH
Confidence 45577777788888888888888888877754210 00111111000000000000 00 0111223333433
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHc
Q 010292 232 ---LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 232 ---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 289 (513)
-|..+.+.|.+..|.++.+-+......-|...--.+|+.|+ +.++++-.+++++....
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34556778888888888888877665556666666676665 56677777777776544
No 492
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=28.92 E-value=47 Score=22.26 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 010292 204 GLSDKCQSLFRDLKKEANISPS 225 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~ 225 (513)
-+++.|+..|.++.....++|+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChh
Confidence 3567777777777655445444
No 493
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=28.88 E-value=1.6e+02 Score=18.85 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=20.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
.+.-++.+.|++++|.+..+.+.+. .|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~---eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI---EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH---TTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh---CCCcHHHHHH
Confidence 3445667777777777777777653 5665444333
No 494
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.74 E-value=4.1e+02 Score=23.40 Aligned_cols=106 Identities=8% Similarity=0.095 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010292 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413 (513)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 413 (513)
|..+++++....+ .+-+++.+ .+..+...+|.-.-++.++...|+.+.|..+++.+.. ...+......++..
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~---~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALE---LLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHH---HhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-
Confidence 3455666554433 12223333 3344445455333577777777888888877765332 22222223333333
Q ss_pred HhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 414 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
..++.+.+|..+.+...+.. ....+..++..+..
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 45577777777777554321 13345555555553
No 495
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.72 E-value=2.3e+02 Score=20.55 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=16.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
|...--.+...+...|++++|++.+-++.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555556666666666666555554
No 496
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.59 E-value=3.7e+02 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=12.0
Q ss_pred HHHHccCHHHHHHHHHHHHc
Q 010292 270 GYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~ 289 (513)
.|.+.|.+++|.++++....
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45566666666666666554
No 497
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=28.48 E-value=4.3e+02 Score=23.57 Aligned_cols=44 Identities=5% Similarity=-0.062 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
++|..+++.-.. -..|..+...+..++...|+...+..+++.+.
T Consensus 116 ~kA~~~L~~~~~---~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 116 NKALNYLERHLD---NIQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHG---CTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---ccCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 445555544432 13455555555556666666666666666665
No 498
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=5.5e+02 Score=24.77 Aligned_cols=210 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 010292 83 QTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG 162 (513)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l 162 (513)
+.++..+..+.++.+....+...|-+....-....||..+-..++..+..-.+- .+|-.+++ ...-..|
T Consensus 69 ~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~Vteg--kIyvEvER---------arlTk~L 137 (439)
T KOG1498|consen 69 DLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEG--KIYVEVER---------ARLTKML 137 (439)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcC--ceEEeehH---------HHHHHHH
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH--
Q 010292 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL------------LGAYMYNGLSDKCQSLFRDLKKEANISPSIVT-- 228 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~-- 228 (513)
...+-..|++++|.+++.+. .+.||.++ ++.|...+++-.|.-+-.++..+.--.||...
T Consensus 138 ~~ike~~Gdi~~Aa~il~el------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 138 AKIKEEQGDIAEAADILCEL------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHcCCHHHHHHHHHhc------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Q ss_pred ---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292 229 ---YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 229 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
|+.++......+.+=.+-+.++..-..|.... ..........|.-+....+-.++........-.-...+|-
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k 291 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYK 291 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCccHH
Q ss_pred HHHHHHHhc
Q 010292 301 LLLRGYAHS 309 (513)
Q Consensus 301 ~ll~~~~~~ 309 (513)
.++..+...
T Consensus 292 ~lLklfv~~ 300 (439)
T KOG1498|consen 292 ELLKLFVTM 300 (439)
T ss_pred HHHHHHHhc
No 499
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=28.37 E-value=6.6e+02 Score=25.76 Aligned_cols=146 Identities=13% Similarity=-0.001 Sum_probs=85.2
Q ss_pred cCchhHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCCCCCCHHHHHH--HHHHhc-ccCCHHHHHHHHHHHHhccCC-
Q 010292 117 HSNGYAFVELMKQLGSR----PRLALEVLNWRRRQAGYGTPMTKEEYTK--GIKFAG-RINNVDLAADLFAEAANKHLK- 188 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~----~~~a~~~~~~~~~~~~~g~~~~~~~~~~--ll~~~~-~~g~~~~a~~~~~~m~~~~~~- 188 (513)
-|+..+.-..+..+... -+.+..++..|.. |+...|-. +...|- ..|+...|...+.......+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-------~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~ 640 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-------PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ 640 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-------CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhh
Confidence 35666666666666542 2224444444422 22222322 223333 458888888877766544332
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
..+..-.|.+...+.|...+|..++.+...- . ....-++-.+.+++.-..+++.|++.|++..+... .+...-+.|.
T Consensus 641 ~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~ 717 (886)
T KOG4507|consen 641 QDVPLVNLANLLIHYGLHLDATKLLLQALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLK 717 (886)
T ss_pred hcccHHHHHHHHHHhhhhccHHHHHHHHHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHH
Confidence 4445556666777777888888888777653 1 33445677777888888888888888888776532 2444445554
Q ss_pred HHHH
Q 010292 269 AGYM 272 (513)
Q Consensus 269 ~~~~ 272 (513)
..-|
T Consensus 718 ~i~c 721 (886)
T KOG4507|consen 718 LIRC 721 (886)
T ss_pred HHHH
Confidence 4333
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.31 E-value=1.8e+02 Score=19.31 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=4.6
Q ss_pred CCHHHHHHHHHHH
Q 010292 381 DCLEEMEKSINDA 393 (513)
Q Consensus 381 ~~~~~a~~~~~~~ 393 (513)
|++=+|-++++++
T Consensus 13 g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 13 GDFFEAHEVLEEL 25 (62)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHhHHHHHHH
Confidence 3333333333333
Done!