Query 010292
Match_columns 513
No_of_seqs 519 out of 2832
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 03:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-33 9E-38 286.6 44.4 401 84-502 86-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.9E-33 2.7E-37 283.1 38.0 373 118-503 82-546 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.1E-32 3.6E-37 271.2 25.6 204 137-344 9-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1E-30 3.4E-35 257.2 24.1 206 173-380 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-25 8.5E-30 214.8 45.7 357 131-502 12-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 9.9E-24 3.4E-28 203.5 45.3 341 131-487 46-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.8E-21 6E-26 191.6 38.9 339 153-499 23-406 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.5E-21 5E-26 195.5 36.2 358 131-503 19-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.1E-21 1.1E-25 189.8 37.5 318 174-502 10-358 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.1E-19 3.9E-24 181.8 33.6 337 156-502 6-444 (514)
11 3fp2_A TPR repeat-containing p 99.9 4.8E-19 1.6E-23 178.3 38.1 360 131-503 38-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 2.1E-18 7.1E-23 163.9 39.0 324 155-484 2-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.3E-17 4.3E-22 158.4 38.9 303 189-503 2-336 (359)
14 3spa_A Mtrpol, DNA-directed RN 99.8 4.5E-21 1.5E-25 193.8 10.4 152 189-345 126-286 (1134)
15 3fp2_A TPR repeat-containing p 99.8 1.2E-17 4.3E-22 168.0 34.5 336 156-502 25-457 (537)
16 3spa_A Mtrpol, DNA-directed RN 99.8 5.2E-21 1.8E-25 193.3 9.1 160 225-392 126-306 (1134)
17 3hym_B Cell division cycle pro 99.8 3.7E-17 1.3E-21 153.4 33.0 295 152-489 18-321 (330)
18 1fch_A Peroxisomal targeting s 99.8 9.9E-18 3.4E-22 160.0 23.6 306 165-498 34-355 (368)
19 3hym_B Cell division cycle pro 99.8 7.5E-16 2.6E-20 144.4 33.8 267 119-395 23-298 (330)
20 1fch_A Peroxisomal targeting s 99.8 3.7E-17 1.3E-21 156.0 23.0 289 132-462 39-354 (368)
21 2xm6_A Protein corresponding t 99.8 1.2E-13 4E-18 137.2 47.0 339 131-504 56-434 (490)
22 4eqf_A PEX5-related protein; a 99.8 1.9E-16 6.5E-21 151.0 24.5 235 155-394 64-308 (365)
23 4eqf_A PEX5-related protein; a 99.8 8E-17 2.7E-21 153.6 21.6 266 189-498 64-352 (365)
24 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.7E-20 143.1 25.3 96 158-255 23-118 (327)
25 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.9E-20 141.7 26.2 263 191-463 22-311 (327)
26 2ooe_A Cleavage stimulation fa 99.7 3.1E-13 1.1E-17 135.6 44.3 217 279-501 256-491 (530)
27 2xm6_A Protein corresponding t 99.7 4.4E-13 1.5E-17 133.0 44.5 320 155-503 38-397 (490)
28 1b89_A Protein (clathrin heavy 99.7 8.3E-18 2.8E-22 157.9 9.5 305 132-490 17-329 (449)
29 3mkr_A Coatomer subunit epsilo 99.7 2.1E-15 7.2E-20 138.4 25.3 278 163-494 6-286 (291)
30 1b89_A Protein (clathrin heavy 99.7 5.9E-17 2E-21 152.2 14.2 327 118-496 30-366 (449)
31 2ooe_A Cleavage stimulation fa 99.7 1.8E-13 6.1E-18 137.3 39.5 373 119-503 12-455 (530)
32 3mkr_A Coatomer subunit epsilo 99.7 6.9E-15 2.4E-19 134.9 26.0 223 267-502 40-264 (291)
33 4g1t_A Interferon-induced prot 99.7 5.9E-14 2E-18 138.7 30.7 366 126-511 59-469 (472)
34 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.8E-18 124.5 26.3 225 226-501 5-235 (258)
35 2pl2_A Hypothetical conserved 99.6 1.6E-13 5.6E-18 120.1 22.5 196 153-354 2-208 (217)
36 1xi4_A Clathrin heavy chain; a 99.6 1.3E-11 4.5E-16 129.5 39.9 323 117-499 984-1306(1630)
37 3uq3_A Heat shock protein STI1 99.6 2.7E-13 9.4E-18 121.9 24.1 225 156-430 5-234 (258)
38 1xi4_A Clathrin heavy chain; a 99.6 2.5E-11 8.5E-16 127.5 40.4 349 90-497 1056-1440(1630)
39 2vq2_A PILW, putative fimbrial 99.6 2.5E-12 8.6E-17 112.9 26.8 200 155-357 7-208 (225)
40 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-12 6.4E-17 116.1 26.0 165 157-324 38-203 (252)
41 4g1t_A Interferon-induced prot 99.6 1.3E-11 4.4E-16 121.8 34.3 359 91-468 59-460 (472)
42 3u4t_A TPR repeat-containing p 99.6 2.5E-12 8.6E-17 116.7 26.8 236 156-395 3-249 (272)
43 2pl2_A Hypothetical conserved 99.6 3.6E-13 1.2E-17 117.9 20.3 210 259-500 3-212 (217)
44 2h6f_A Protein farnesyltransfe 99.5 5.8E-12 2E-16 119.5 28.6 185 156-345 97-288 (382)
45 2ho1_A Type 4 fimbrial biogene 99.5 4.3E-12 1.5E-16 113.8 25.9 201 261-501 37-237 (252)
46 3u4t_A TPR repeat-containing p 99.5 2.7E-12 9.2E-17 116.5 23.5 246 193-481 6-263 (272)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-12 4.5E-17 118.7 21.0 249 201-496 16-269 (275)
48 2q7f_A YRRB protein; TPR, prot 99.5 2.4E-12 8.1E-17 114.7 22.3 200 155-359 22-221 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.1E-13 2.1E-17 121.0 18.2 244 168-426 17-269 (275)
50 2vq2_A PILW, putative fimbrial 99.5 8.6E-12 2.9E-16 109.5 25.1 202 260-465 7-209 (225)
51 1ouv_A Conserved hypothetical 99.5 7.1E-11 2.4E-15 107.3 31.2 228 155-433 5-252 (273)
52 2h6f_A Protein farnesyltransfe 99.5 6.7E-12 2.3E-16 119.1 24.8 236 189-464 96-344 (382)
53 4a1s_A PINS, partner of inscut 99.5 1.7E-12 5.8E-17 125.6 20.4 274 189-501 47-371 (411)
54 3ro2_A PINS homolog, G-protein 99.5 3.2E-12 1.1E-16 119.5 21.6 277 193-502 8-332 (338)
55 3sf4_A G-protein-signaling mod 99.5 5.8E-12 2E-16 121.5 23.5 276 189-466 8-335 (406)
56 4a1s_A PINS, partner of inscut 99.5 2.1E-12 7.1E-17 125.0 20.1 275 157-467 49-372 (411)
57 1ouv_A Conserved hypothetical 99.5 1.4E-10 4.8E-15 105.3 31.0 228 225-503 5-252 (273)
58 3sf4_A G-protein-signaling mod 99.5 7.2E-12 2.5E-16 120.8 23.4 302 153-454 6-363 (406)
59 2q7f_A YRRB protein; TPR, prot 99.5 3.2E-12 1.1E-16 113.8 19.0 201 226-468 23-223 (243)
60 3ro2_A PINS homolog, G-protein 99.5 7.5E-12 2.6E-16 117.1 21.9 279 158-467 7-332 (338)
61 3ulq_A Response regulator aspa 99.4 2.4E-11 8.2E-16 116.4 24.8 235 234-501 111-367 (383)
62 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6.1E-17 120.1 15.0 246 226-501 27-306 (311)
63 3vtx_A MAMA; tetratricopeptide 99.4 7.2E-11 2.5E-15 100.2 22.9 167 155-325 4-170 (184)
64 3e4b_A ALGK; tetratricopeptide 99.4 1E-10 3.6E-15 114.3 24.0 274 171-468 89-388 (452)
65 2ond_A Cleavage stimulation fa 99.4 1.8E-09 6.1E-14 99.8 31.2 179 173-357 33-229 (308)
66 4abn_A Tetratricopeptide repea 99.4 6.8E-11 2.3E-15 116.4 22.5 207 134-351 84-312 (474)
67 3nf1_A KLC 1, kinesin light ch 99.4 2.7E-11 9.3E-16 112.0 17.9 242 152-395 23-306 (311)
68 2ond_A Cleavage stimulation fa 99.4 1.3E-09 4.4E-14 100.8 28.9 236 189-467 7-270 (308)
69 3e4b_A ALGK; tetratricopeptide 99.3 6.9E-11 2.4E-15 115.5 20.7 340 131-504 16-389 (452)
70 3ulq_A Response regulator aspa 99.3 1.8E-10 6.3E-15 110.2 23.0 232 164-430 111-366 (383)
71 4abn_A Tetratricopeptide repea 99.3 7.8E-11 2.7E-15 115.9 19.4 148 172-324 84-249 (474)
72 3vtx_A MAMA; tetratricopeptide 99.3 3.4E-10 1.2E-14 95.9 20.7 166 295-466 4-169 (184)
73 3as5_A MAMA; tetratricopeptide 99.3 3.8E-10 1.3E-14 95.4 20.4 166 156-325 8-173 (186)
74 3q15_A PSP28, response regulat 99.3 7.3E-10 2.5E-14 105.8 24.6 316 152-501 6-364 (378)
75 1hz4_A MALT regulatory protein 99.3 4.1E-09 1.4E-13 100.3 29.1 303 191-503 15-350 (373)
76 4e6h_A MRNA 3'-END-processing 99.3 6.2E-08 2.1E-12 98.2 38.9 375 119-502 65-570 (679)
77 1hz4_A MALT regulatory protein 99.3 1.8E-08 6.1E-13 95.9 31.7 302 159-468 17-350 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.3 3.9E-10 1.3E-14 115.6 20.9 167 153-324 6-173 (723)
79 3q15_A PSP28, response regulat 99.2 2.4E-09 8.2E-14 102.2 23.6 230 163-393 108-362 (378)
80 3edt_B KLC 2, kinesin light ch 99.2 1E-09 3.5E-14 99.7 18.4 229 273-502 13-281 (283)
81 3as5_A MAMA; tetratricopeptide 99.2 3.5E-09 1.2E-13 89.3 19.4 164 190-358 8-171 (186)
82 3edt_B KLC 2, kinesin light ch 99.2 1.8E-09 6.2E-14 98.0 18.5 229 237-466 12-280 (283)
83 4gyw_A UDP-N-acetylglucosamine 99.2 3.3E-09 1.1E-13 108.7 21.9 165 189-359 8-173 (723)
84 4i17_A Hypothetical protein; T 99.1 1.5E-08 5E-13 89.1 22.9 197 154-364 5-213 (228)
85 4e6h_A MRNA 3'-END-processing 99.1 5.1E-07 1.7E-11 91.5 36.6 348 152-503 62-534 (679)
86 2fo7_A Synthetic consensus TPR 99.1 8.5E-09 2.9E-13 81.7 17.5 129 158-289 3-131 (136)
87 1qqe_A Vesicular transport pro 99.1 3E-08 1E-12 90.8 22.1 96 207-324 2-105 (292)
88 4i17_A Hypothetical protein; T 99.0 6.4E-08 2.2E-12 84.9 22.2 213 224-479 5-220 (228)
89 2fo7_A Synthetic consensus TPR 99.0 3.9E-08 1.3E-12 77.8 17.9 131 191-325 2-132 (136)
90 3qky_A Outer membrane assembly 99.0 5.9E-08 2E-12 87.1 19.9 171 154-325 13-224 (261)
91 1qqe_A Vesicular transport pro 99.0 5.2E-08 1.8E-12 89.2 19.5 162 163-324 44-227 (292)
92 3urz_A Uncharacterized protein 98.9 8.5E-08 2.9E-12 82.8 19.3 170 158-334 6-193 (208)
93 2r5s_A Uncharacterized protein 98.9 1.8E-08 6.2E-13 84.5 14.3 163 158-324 8-172 (176)
94 2pzi_A Probable serine/threoni 98.9 3.7E-08 1.3E-12 101.3 18.8 189 167-361 402-603 (681)
95 3mv2_B Coatomer subunit epsilo 98.9 2.6E-07 8.7E-12 83.3 21.7 57 161-217 105-163 (310)
96 3qou_A Protein YBBN; thioredox 98.9 8.6E-08 2.9E-12 87.4 18.9 177 139-323 104-282 (287)
97 3mv2_B Coatomer subunit epsilo 98.9 2.8E-07 9.5E-12 83.0 21.0 184 175-365 85-287 (310)
98 3dra_A Protein farnesyltransfe 98.9 3.5E-06 1.2E-10 76.6 27.2 171 133-311 48-235 (306)
99 3dra_A Protein farnesyltransfe 98.8 4E-06 1.4E-10 76.2 27.0 221 168-395 45-286 (306)
100 3qky_A Outer membrane assembly 98.8 4.1E-07 1.4E-11 81.6 20.5 189 224-433 13-225 (261)
101 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.4E-07 8.1E-12 81.1 18.5 192 155-365 3-218 (225)
102 4ga2_A E3 SUMO-protein ligase 98.8 4.3E-08 1.5E-12 79.7 12.4 144 162-310 3-148 (150)
103 2ifu_A Gamma-SNAP; membrane fu 98.8 4.7E-07 1.6E-11 83.4 20.5 205 203-465 4-222 (307)
104 2pzi_A Probable serine/threoni 98.8 1.6E-07 5.4E-12 96.6 18.5 175 131-311 404-583 (681)
105 2vsy_A XCC0866; transferase, g 98.8 2.6E-07 8.7E-12 93.3 19.0 152 170-325 3-157 (568)
106 3urz_A Uncharacterized protein 98.7 8E-07 2.7E-11 76.6 18.3 163 131-303 17-197 (208)
107 2uy1_A Cleavage stimulation fa 98.7 1.6E-05 5.4E-10 78.1 29.6 361 119-501 14-412 (493)
108 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.5E-06 8.4E-11 74.6 21.5 190 189-398 3-215 (225)
109 3u3w_A Transcriptional activat 98.7 6.8E-06 2.3E-10 75.0 25.3 199 116-324 42-265 (293)
110 2ifu_A Gamma-SNAP; membrane fu 98.7 1E-06 3.4E-11 81.2 19.8 165 158-323 38-222 (307)
111 3q7a_A Farnesyltransferase alp 98.7 2.5E-05 8.6E-10 71.8 28.5 167 174-345 72-256 (349)
112 3rjv_A Putative SEL1 repeat pr 98.7 1.7E-06 5.7E-11 74.8 19.3 176 137-327 5-199 (212)
113 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.6E-11 79.2 20.2 200 117-323 43-264 (293)
114 2vsy_A XCC0866; transferase, g 98.7 6.6E-07 2.3E-11 90.2 18.5 153 132-291 3-158 (568)
115 3u3w_A Transcriptional activat 98.7 6.7E-06 2.3E-10 75.0 23.6 128 373-500 121-264 (293)
116 4ga2_A E3 SUMO-protein ligase 98.7 7.2E-08 2.5E-12 78.3 9.2 113 372-488 36-149 (150)
117 1a17_A Serine/threonine protei 98.7 1.5E-06 5.2E-11 71.5 17.1 127 158-287 15-143 (166)
118 3qou_A Protein YBBN; thioredox 98.6 9.4E-07 3.2E-11 80.4 16.7 164 296-499 117-281 (287)
119 2r5s_A Uncharacterized protein 98.6 6.6E-07 2.3E-11 74.8 14.2 159 191-355 7-168 (176)
120 1na0_A Designed protein CTPR3; 98.6 2.4E-06 8.3E-11 66.2 16.3 98 156-255 9-106 (125)
121 2e2e_A Formate-dependent nitri 98.6 5.2E-07 1.8E-11 75.5 12.0 122 166-290 20-144 (177)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.6E-06 2.3E-10 70.9 19.2 128 193-326 9-151 (213)
123 3gw4_A Uncharacterized protein 98.6 7.2E-07 2.5E-11 76.3 12.9 158 167-324 3-175 (203)
124 2vyi_A SGTA protein; chaperone 98.6 3E-06 1E-10 66.2 15.3 117 157-276 13-129 (131)
125 4gco_A Protein STI-1; structur 98.5 3.7E-06 1.3E-10 65.7 15.3 96 158-255 15-110 (126)
126 3rjv_A Putative SEL1 repeat pr 98.5 1.7E-05 5.9E-10 68.4 21.0 142 174-325 4-158 (212)
127 2uy1_A Cleavage stimulation fa 98.5 4.5E-05 1.5E-09 74.8 25.9 328 156-499 15-380 (493)
128 2lni_A Stress-induced-phosphop 98.5 2.2E-06 7.5E-11 67.4 13.5 99 154-254 14-112 (133)
129 3gyz_A Chaperone protein IPGC; 98.5 2.9E-06 9.8E-11 68.6 13.9 101 400-502 33-133 (151)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.1E-05 3.9E-10 69.4 18.7 129 158-291 8-151 (213)
131 2qfc_A PLCR protein; TPR, HTH, 98.5 4.3E-05 1.5E-09 69.6 23.4 160 189-350 74-255 (293)
132 3q7a_A Farnesyltransferase alp 98.5 6.5E-05 2.2E-09 69.0 24.1 173 132-312 68-258 (349)
133 1a17_A Serine/threonine protei 98.5 8E-06 2.7E-10 67.0 16.7 130 190-323 13-144 (166)
134 1na0_A Designed protein CTPR3; 98.5 9.2E-06 3.1E-10 62.8 16.2 97 190-289 9-105 (125)
135 3gw4_A Uncharacterized protein 98.5 2.4E-06 8.2E-11 73.0 13.5 95 405-499 68-173 (203)
136 4f3v_A ESX-1 secretion system 98.5 2.7E-06 9.3E-11 75.6 13.6 189 130-326 18-238 (282)
137 4gco_A Protein STI-1; structur 98.4 4.8E-06 1.6E-10 65.1 13.2 93 373-468 19-111 (126)
138 1p5q_A FKBP52, FK506-binding p 98.4 7E-06 2.4E-10 76.5 16.3 149 170-323 127-292 (336)
139 2c2l_A CHIP, carboxy terminus 98.4 2.7E-06 9.2E-11 77.1 13.0 193 227-431 5-198 (281)
140 1p5q_A FKBP52, FK506-binding p 98.4 4.4E-07 1.5E-11 84.7 7.9 131 155-288 146-292 (336)
141 2vgx_A Chaperone SYCD; alterna 98.4 2.3E-06 7.7E-11 69.2 11.1 93 372-467 26-118 (148)
142 4f3v_A ESX-1 secretion system 98.4 4.6E-06 1.6E-10 74.1 13.9 127 372-502 107-237 (282)
143 2vyi_A SGTA protein; chaperone 98.4 1.3E-05 4.6E-10 62.4 15.3 120 189-312 11-130 (131)
144 3gyz_A Chaperone protein IPGC; 98.4 4.4E-06 1.5E-10 67.5 12.6 95 158-254 38-132 (151)
145 2vgx_A Chaperone SYCD; alterna 98.4 2E-06 6.8E-11 69.5 10.3 97 189-288 20-116 (148)
146 2e2e_A Formate-dependent nitri 98.4 1.9E-06 6.5E-11 72.0 10.3 120 379-502 22-144 (177)
147 2c2l_A CHIP, carboxy terminus 98.4 2.1E-06 7.3E-11 77.8 11.4 94 260-356 3-97 (281)
148 1elw_A TPR1-domain of HOP; HOP 98.3 3.2E-05 1.1E-09 58.9 15.6 95 158-254 6-100 (118)
149 2kck_A TPR repeat; tetratricop 98.3 9.1E-06 3.1E-10 61.4 12.2 98 156-255 6-106 (112)
150 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.4E-11 74.6 8.0 151 162-315 10-175 (198)
151 2lni_A Stress-induced-phosphop 98.3 1.7E-05 6E-10 62.1 14.2 98 189-289 15-112 (133)
152 3dss_A Geranylgeranyl transfer 98.3 0.0011 3.9E-08 60.5 27.7 164 174-342 48-238 (331)
153 3upv_A Heat shock protein STI1 98.3 1.8E-05 6.2E-10 61.6 13.9 96 157-254 5-100 (126)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 2E-05 6.9E-10 67.0 14.6 132 157-291 39-187 (198)
155 3upv_A Heat shock protein STI1 98.3 4.1E-05 1.4E-09 59.5 15.1 97 190-289 4-100 (126)
156 3q49_B STIP1 homology and U bo 98.3 6.3E-05 2.2E-09 59.3 16.5 99 154-254 7-105 (137)
157 2xcb_A PCRH, regulatory protei 98.3 1.7E-05 5.9E-10 63.4 13.0 93 372-467 23-115 (142)
158 1elr_A TPR2A-domain of HOP; HO 98.3 1.4E-05 4.7E-10 62.4 12.3 97 158-254 6-107 (131)
159 2kck_A TPR repeat; tetratricop 98.3 1.5E-05 5.3E-10 60.1 12.1 98 404-503 7-107 (112)
160 4gcn_A Protein STI-1; structur 98.2 2.3E-05 8E-10 61.2 12.8 97 158-254 10-111 (127)
161 2xcb_A PCRH, regulatory protei 98.2 2.3E-05 7.9E-10 62.6 13.0 94 159-254 21-114 (142)
162 3sz7_A HSC70 cochaperone (SGT) 98.2 3.6E-05 1.2E-09 63.2 14.3 99 155-255 10-108 (164)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 3.1E-05 1E-09 63.6 13.7 94 372-468 16-109 (164)
164 4b4t_Q 26S proteasome regulato 98.2 0.00077 2.6E-08 64.9 25.6 188 165-352 13-237 (434)
165 4gcn_A Protein STI-1; structur 98.2 4.8E-05 1.6E-09 59.4 13.6 105 190-298 8-118 (127)
166 1elw_A TPR1-domain of HOP; HOP 98.2 0.00016 5.4E-09 54.9 16.5 98 190-290 4-101 (118)
167 3q49_B STIP1 homology and U bo 98.2 5.2E-05 1.8E-09 59.8 13.8 93 372-467 14-106 (137)
168 2dba_A Smooth muscle cell asso 98.2 8.4E-05 2.9E-09 59.4 15.1 100 154-255 26-128 (148)
169 1elr_A TPR2A-domain of HOP; HO 98.2 3E-05 1E-09 60.4 12.1 109 190-302 4-118 (131)
170 4b4t_Q 26S proteasome regulato 98.1 0.00018 6.3E-09 69.4 20.1 197 269-465 12-243 (434)
171 1hxi_A PEX5, peroxisome target 98.1 3.9E-05 1.3E-09 59.3 11.5 92 161-254 22-113 (121)
172 3dss_A Geranylgeranyl transfer 98.1 0.0034 1.2E-07 57.3 25.8 185 133-325 45-267 (331)
173 3ro3_A PINS homolog, G-protein 98.1 4.1E-05 1.4E-09 62.2 12.0 96 158-253 11-116 (164)
174 3ro3_A PINS homolog, G-protein 98.0 5.3E-05 1.8E-09 61.5 12.0 135 190-324 9-157 (164)
175 1hxi_A PEX5, peroxisome target 98.0 9.4E-05 3.2E-09 57.1 12.5 95 192-289 19-113 (121)
176 2dba_A Smooth muscle cell asso 98.0 0.00018 6.1E-09 57.4 14.7 97 189-289 27-127 (148)
177 2xev_A YBGF; tetratricopeptide 98.0 0.00029 1E-08 54.7 15.5 91 162-255 8-105 (129)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00011 3.8E-09 71.5 15.3 123 189-316 267-405 (457)
179 1wao_1 Serine/threonine protei 98.0 2.8E-05 9.7E-10 76.1 11.1 121 162-285 12-134 (477)
180 1wao_1 Serine/threonine protei 98.0 2.4E-05 8.1E-10 76.7 9.7 121 374-498 13-135 (477)
181 3n71_A Histone lysine methyltr 97.9 8.2E-05 2.8E-09 72.4 13.1 128 375-502 317-464 (490)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 1.6E-05 5.6E-10 77.4 7.6 120 158-280 270-404 (457)
183 2xev_A YBGF; tetratricopeptide 97.9 0.00024 8.3E-09 55.1 13.1 92 194-289 6-104 (129)
184 1dce_A Protein (RAB geranylger 97.9 0.0014 4.7E-08 65.4 21.2 172 171-347 44-242 (567)
185 1ihg_A Cyclophilin 40; ppiase 97.9 0.00023 7.8E-09 67.1 14.1 121 158-281 225-361 (370)
186 3k9i_A BH0479 protein; putativ 97.8 4.5E-05 1.5E-09 58.5 7.3 89 379-468 2-91 (117)
187 3rkv_A Putative peptidylprolyl 97.8 0.00041 1.4E-08 56.6 13.1 98 156-255 11-126 (162)
188 3rkv_A Putative peptidylprolyl 97.7 0.0005 1.7E-08 56.0 12.8 100 189-289 10-125 (162)
189 1klx_A Cysteine rich protein B 97.7 0.00046 1.6E-08 54.6 12.0 114 380-505 8-129 (138)
190 3k9i_A BH0479 protein; putativ 97.7 8.5E-05 2.9E-09 56.9 7.0 85 169-255 3-90 (117)
191 1dce_A Protein (RAB geranylger 97.7 0.0023 8E-08 63.8 19.0 174 131-313 42-243 (567)
192 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00021 7.3E-09 66.4 10.8 146 157-324 180-327 (338)
193 1ihg_A Cyclophilin 40; ppiase 97.7 0.00048 1.6E-08 64.9 13.2 120 373-494 229-362 (370)
194 2hr2_A Hypothetical protein; a 97.7 0.002 6.8E-08 51.6 14.6 94 192-288 13-129 (159)
195 2hr2_A Hypothetical protein; a 97.7 0.00077 2.6E-08 54.0 12.1 94 408-501 16-130 (159)
196 2l6j_A TPR repeat-containing p 97.6 5.5E-05 1.9E-09 57.1 5.2 90 156-248 4-100 (111)
197 3ma5_A Tetratricopeptide repea 97.6 0.00038 1.3E-08 51.4 8.7 65 154-218 5-69 (100)
198 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00036 1.2E-08 64.9 10.3 144 189-354 178-322 (338)
199 1klx_A Cysteine rich protein B 97.5 0.0014 4.7E-08 51.8 11.9 110 171-291 10-127 (138)
200 2kat_A Uncharacterized protein 97.5 0.0012 4.2E-08 50.0 11.1 78 175-254 4-81 (115)
201 3n71_A Histone lysine methyltr 97.5 0.0013 4.5E-08 64.0 13.5 95 372-466 356-463 (490)
202 1na3_A Designed protein CTPR2; 97.4 0.0019 6.4E-08 46.2 11.1 79 156-236 9-87 (91)
203 2kat_A Uncharacterized protein 97.4 0.0012 4.1E-08 50.1 10.0 79 137-219 4-82 (115)
204 1na3_A Designed protein CTPR2; 97.3 0.0032 1.1E-07 44.9 10.9 82 403-486 9-90 (91)
205 2l6j_A TPR repeat-containing p 97.3 0.0013 4.5E-08 49.2 9.0 61 192-254 6-66 (111)
206 1zu2_A Mitochondrial import re 97.3 0.00086 3E-08 53.5 7.7 94 167-265 13-128 (158)
207 3ly7_A Transcriptional activat 97.2 0.017 6E-07 53.0 16.2 50 152-201 190-244 (372)
208 1zu2_A Mitochondrial import re 97.1 0.0021 7.2E-08 51.3 8.3 99 201-304 13-132 (158)
209 3ma5_A Tetratricopeptide repea 97.1 0.003 1E-07 46.5 8.7 67 400-467 4-70 (100)
210 3qww_A SET and MYND domain-con 96.8 0.0061 2.1E-07 58.3 10.6 88 379-466 310-410 (433)
211 3mkq_A Coatomer beta'-subunit; 96.8 0.052 1.8E-06 56.8 18.8 46 237-288 663-708 (814)
212 3qwp_A SET and MYND domain-con 96.7 0.0095 3.3E-07 57.0 11.1 94 373-466 293-399 (429)
213 3mkq_A Coatomer beta'-subunit; 96.7 0.076 2.6E-06 55.6 19.0 120 198-351 607-727 (814)
214 3qww_A SET and MYND domain-con 96.7 0.0078 2.7E-07 57.5 10.0 87 415-501 310-410 (433)
215 3qwp_A SET and MYND domain-con 96.5 0.013 4.3E-07 56.1 10.4 92 410-501 294-399 (429)
216 1wy6_A Hypothetical protein ST 96.4 0.17 5.7E-06 38.5 13.3 121 380-505 20-157 (172)
217 3ly7_A Transcriptional activat 96.4 0.23 7.9E-06 45.6 17.3 141 188-335 192-347 (372)
218 2kc7_A BFR218_protein; tetratr 96.2 0.053 1.8E-06 39.1 10.2 58 162-219 6-64 (99)
219 3bee_A Putative YFRE protein; 96.2 0.082 2.8E-06 37.9 10.8 67 153-219 3-72 (93)
220 1wy6_A Hypothetical protein ST 96.2 0.29 9.9E-06 37.2 13.9 60 373-434 97-156 (172)
221 2kc7_A BFR218_protein; tetratr 96.1 0.015 5.1E-07 42.2 6.8 59 373-433 6-65 (99)
222 3mkq_B Coatomer subunit alpha; 95.9 0.55 1.9E-05 38.0 16.6 102 164-286 13-114 (177)
223 3bee_A Putative YFRE protein; 95.8 0.07 2.4E-06 38.3 9.0 68 400-468 3-73 (93)
224 3u64_A Protein TP_0956; tetrat 95.8 0.13 4.4E-06 45.4 11.9 110 382-499 178-295 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.6 0.088 3E-06 38.7 9.3 64 155-218 4-74 (104)
226 3mkq_B Coatomer subunit alpha; 95.4 0.86 3E-05 36.8 16.7 45 273-323 17-61 (177)
227 1pc2_A Mitochondria fission pr 95.3 0.11 3.9E-06 40.9 9.1 87 381-472 12-103 (152)
228 1pc2_A Mitochondria fission pr 95.2 0.14 4.9E-06 40.3 9.4 77 176-254 18-99 (152)
229 3u64_A Protein TP_0956; tetrat 95.2 0.26 8.8E-06 43.5 11.7 94 171-267 178-283 (301)
230 4h7y_A Dual specificity protei 95.2 0.17 6E-06 39.3 9.4 51 452-503 74-124 (161)
231 2v5f_A Prolyl 4-hydroxylase su 94.7 0.19 6.4E-06 36.9 8.5 24 299-322 49-72 (104)
232 4b4t_P 26S proteasome regulato 94.7 3 0.0001 39.8 19.0 54 170-223 30-89 (445)
233 4ady_A RPN2, 26S proteasome re 94.4 2.8 9.5E-05 43.7 18.8 155 306-466 500-657 (963)
234 4ady_A RPN2, 26S proteasome re 94.3 2.3 7.8E-05 44.3 17.8 260 236-500 384-656 (963)
235 1nzn_A CGI-135 protein, fissio 92.8 1.4 4.8E-05 33.3 10.2 94 373-468 7-104 (126)
236 2ff4_A Probable regulatory pro 92.7 0.49 1.7E-05 44.4 9.5 72 192-265 173-249 (388)
237 3lvg_A Clathrin heavy chain 1; 92.6 2.4E-05 8.1E-10 73.2 -19.5 264 155-458 53-324 (624)
238 4h7y_A Dual specificity protei 92.4 2.4 8.1E-05 33.1 11.0 103 155-259 12-127 (161)
239 1nzn_A CGI-135 protein, fissio 92.3 2.8 9.7E-05 31.6 11.3 84 312-397 17-104 (126)
240 4fhn_B Nucleoporin NUP120; pro 91.8 3 0.0001 45.4 15.5 80 264-345 902-985 (1139)
241 4fhn_B Nucleoporin NUP120; pro 91.7 5 0.00017 43.7 17.1 130 370-501 902-1049(1139)
242 4gns_B Protein CSD3, chitin bi 91.5 2 6.9E-05 43.7 12.7 125 373-499 254-397 (754)
243 2ff4_A Probable regulatory pro 90.8 0.92 3.1E-05 42.5 9.0 57 407-464 175-231 (388)
244 1v54_E Cytochrome C oxidase po 90.2 3.8 0.00013 29.3 9.3 62 137-198 26-87 (109)
245 4gns_B Protein CSD3, chitin bi 89.1 2 6.7E-05 43.8 10.3 59 438-498 613-680 (754)
246 1qsa_A Protein (soluble lytic 88.6 21 0.00072 35.6 24.9 116 382-500 229-346 (618)
247 3txn_A 26S proteasome regulato 88.6 15 0.00053 34.1 16.6 93 372-464 104-207 (394)
248 1v54_E Cytochrome C oxidase po 88.5 3.2 0.00011 29.6 7.9 62 277-339 26-87 (109)
249 2y69_E Cytochrome C oxidase su 87.2 6.3 0.00021 29.9 9.2 62 137-198 69-130 (152)
250 3ffl_A Anaphase-promoting comp 84.9 4 0.00014 32.4 7.7 115 161-288 25-149 (167)
251 2y69_E Cytochrome C oxidase su 83.2 7.2 0.00025 29.6 7.9 60 279-339 71-130 (152)
252 3lvg_A Clathrin heavy chain 1; 82.5 0.017 5.9E-07 54.5 -7.7 180 155-350 82-281 (624)
253 4b4t_P 26S proteasome regulato 81.7 37 0.0012 32.3 24.9 95 372-466 142-246 (445)
254 3o48_A Mitochondria fission 1 81.3 16 0.00054 27.8 9.5 60 408-467 45-107 (134)
255 3ffl_A Anaphase-promoting comp 80.0 17 0.00057 28.9 9.5 26 474-499 123-148 (167)
256 3o48_A Mitochondria fission 1 79.3 18 0.00063 27.4 9.5 69 327-396 36-107 (134)
257 3esl_A Checkpoint serine/threo 79.3 15 0.0005 30.3 9.3 53 419-471 95-148 (202)
258 4b4t_R RPN7, 26S proteasome re 78.4 45 0.0016 31.4 14.6 95 372-466 136-236 (429)
259 2p58_C Putative type III secre 77.4 17 0.00058 25.9 8.4 79 204-291 21-99 (116)
260 2uwj_G Type III export protein 77.2 16 0.00056 25.9 7.6 79 204-291 20-98 (115)
261 1zbp_A Hypothetical protein VP 77.2 10 0.00034 32.9 8.1 116 375-502 5-129 (273)
262 3esl_A Checkpoint serine/threo 75.5 32 0.0011 28.3 10.3 59 380-438 92-150 (202)
263 2wpv_A GET4, UPF0363 protein Y 75.3 45 0.0015 29.8 22.4 187 172-394 13-215 (312)
264 3lpz_A GET4 (YOR164C homolog); 74.1 50 0.0017 29.8 22.8 166 193-394 38-214 (336)
265 4b4t_R RPN7, 26S proteasome re 73.1 25 0.00086 33.2 10.8 97 191-289 132-236 (429)
266 3eiq_C Programmed cell death p 73.0 32 0.0011 31.4 10.9 62 372-435 222-285 (358)
267 1wdy_A 2-5A-dependent ribonucl 72.7 5.9 0.0002 34.6 6.1 88 414-509 190-282 (285)
268 4a1g_A Mitotic checkpoint seri 71.7 20 0.0007 27.9 8.0 51 386-436 84-134 (152)
269 3txn_A 26S proteasome regulato 70.6 68 0.0023 29.8 20.4 134 190-324 19-167 (394)
270 3eiq_C Programmed cell death p 69.3 68 0.0023 29.3 12.9 78 405-483 219-298 (358)
271 1y8m_A FIS1; mitochondria, unk 67.9 39 0.0013 26.0 11.3 61 408-468 44-107 (144)
272 1k1a_A B-cell lymphoma 3-encod 67.2 31 0.001 28.9 9.4 26 269-294 14-39 (241)
273 1y8m_A FIS1; mitochondria, unk 66.5 42 0.0014 25.8 10.7 68 328-396 36-106 (144)
274 1wdy_A 2-5A-dependent ribonucl 64.8 26 0.00091 30.2 8.7 91 411-509 153-249 (285)
275 2wvi_A Mitotic checkpoint seri 64.3 19 0.00064 28.6 6.5 51 422-472 79-130 (164)
276 2p58_C Putative type III secre 62.9 39 0.0013 24.1 7.6 85 382-476 22-106 (116)
277 1n11_A Ankyrin; clathrin, BAND 62.9 26 0.0009 32.9 8.8 308 161-510 49-374 (437)
278 4aez_C MAD3, mitotic spindle c 62.4 25 0.00087 29.4 7.2 50 422-471 133-183 (223)
279 2uwj_G Type III export protein 62.4 38 0.0013 24.1 6.8 86 381-476 20-105 (115)
280 4a1g_A Mitotic checkpoint seri 61.9 24 0.00081 27.6 6.6 50 422-471 84-134 (152)
281 1zbp_A Hypothetical protein VP 61.1 82 0.0028 27.3 15.1 54 165-218 6-59 (273)
282 3e3v_A Regulatory protein RECX 58.6 70 0.0024 25.7 10.0 33 313-345 50-82 (177)
283 1n11_A Ankyrin; clathrin, BAND 58.5 44 0.0015 31.3 9.5 301 161-501 82-401 (437)
284 2wvi_A Mitotic checkpoint seri 58.3 35 0.0012 27.0 7.1 56 384-439 77-132 (164)
285 2d2s_A Exocyst complex compone 57.9 86 0.003 26.6 10.7 29 259-287 89-117 (235)
286 3kea_A K1L; tropism, ANK repea 56.6 33 0.0011 30.0 7.7 213 239-475 9-225 (285)
287 3kea_A K1L; tropism, ANK repea 55.6 13 0.00046 32.6 4.9 227 203-463 9-243 (285)
288 3d5l_A Regulatory protein RECX 53.6 75 0.0026 26.6 8.9 32 312-343 92-123 (221)
289 2wpv_A GET4, UPF0363 protein Y 52.2 1.3E+02 0.0044 26.8 22.1 78 368-465 135-215 (312)
290 3ltm_A Alpha-REP4; protein eng 51.7 96 0.0033 25.2 19.2 153 155-324 32-184 (211)
291 2qx5_A Nucleoporin NIC96; mRNA 50.1 2.1E+02 0.0072 28.7 20.3 43 161-203 157-199 (661)
292 4aez_C MAD3, mitotic spindle c 49.6 22 0.00076 29.8 4.8 55 383-437 130-184 (223)
293 2fu4_A Ferric uptake regulatio 48.2 60 0.002 21.8 6.5 31 279-309 35-65 (83)
294 3eu9_A Huntingtin-interacting 48.1 15 0.00052 30.8 3.9 14 414-427 218-231 (240)
295 2fe3_A Peroxide operon regulat 47.3 90 0.0031 23.9 7.9 62 285-347 11-72 (145)
296 1k1a_A B-cell lymphoma 3-encod 47.0 59 0.002 27.0 7.6 29 232-260 12-40 (241)
297 2zu6_B Programmed cell death p 47.0 1.5E+02 0.0053 26.2 12.1 25 229-253 6-30 (307)
298 3d9h_A CDNA FLJ77766, highly s 46.1 35 0.0012 29.8 6.1 20 230-249 16-35 (285)
299 2rfa_A Transient receptor pote 45.8 26 0.00088 29.3 5.0 19 163-181 41-59 (232)
300 2xig_A Ferric uptake regulatio 44.9 1.1E+02 0.0036 23.7 8.0 62 285-347 16-77 (150)
301 3pvs_A Replication-associated 44.2 2.1E+02 0.0072 27.0 12.1 38 273-310 267-304 (447)
302 3ljn_A Hypothetical protein; a 43.2 61 0.0021 29.4 7.5 96 155-257 17-112 (364)
303 2fe3_A Peroxide operon regulat 43.1 91 0.0031 23.9 7.3 62 250-312 11-72 (145)
304 2f6m_A Suppressor protein STP2 43.0 36 0.0012 22.0 3.9 45 441-486 5-49 (65)
305 4ets_A Ferric uptake regulatio 43.0 67 0.0023 25.3 6.6 57 254-311 26-84 (162)
306 3eu9_A Huntingtin-interacting 40.8 37 0.0013 28.2 5.3 25 479-503 213-237 (240)
307 3lpz_A GET4 (YOR164C homolog); 40.6 2E+02 0.007 25.8 22.7 135 158-311 37-182 (336)
308 3hra_A Ankyrin repeat family p 40.5 47 0.0016 26.7 5.7 15 271-285 12-26 (201)
309 2ion_A PDCD4, programmed cell 40.3 1.3E+02 0.0044 23.4 8.3 61 159-219 12-74 (152)
310 2f6m_A Suppressor protein STP2 40.3 43 0.0015 21.6 4.0 47 158-204 4-50 (65)
311 2ion_A PDCD4, programmed cell 40.0 1.3E+02 0.0045 23.4 9.3 61 372-434 14-76 (152)
312 4g8k_A 2-5A-dependent ribonucl 40.0 59 0.002 29.0 6.8 20 162-181 28-47 (337)
313 3ljn_A Hypothetical protein; a 39.5 99 0.0034 27.9 8.4 47 413-463 218-266 (364)
314 3jxi_A Vanilloid receptor-rela 39.5 21 0.00071 30.6 3.5 20 446-465 230-249 (260)
315 1ug3_A EIF4GI, eukaryotic prot 39.0 71 0.0024 28.9 7.0 64 192-257 13-77 (339)
316 3lxu_X Tripeptidyl-peptidase 2 38.6 4.3E+02 0.015 29.0 13.5 164 163-330 1115-1350(1354)
317 3bu8_A Telomeric repeat-bindin 37.7 1.7E+02 0.0057 24.3 7.9 14 383-396 88-101 (235)
318 3b7b_A Euchromatic histone-lys 37.5 21 0.00072 30.0 3.1 17 414-430 218-234 (237)
319 3aji_A 26S proteasome non-ATPa 37.5 1.7E+02 0.0058 23.9 9.3 20 267-286 9-28 (231)
320 2xai_A ASB-9, ankyrin repeat a 37.4 1.6E+02 0.0054 24.9 8.9 187 303-510 7-196 (261)
321 2fu4_A Ferric uptake regulatio 36.9 93 0.0032 20.8 6.0 62 285-347 6-68 (83)
322 2nsz_A Programmed cell death p 36.4 1.3E+02 0.0046 22.4 10.4 61 372-434 12-74 (129)
323 2etb_A Transient receptor pote 36.3 95 0.0033 26.2 7.3 21 198-218 7-27 (256)
324 1bpo_A Protein (clathrin); cla 36.1 2.3E+02 0.0078 26.9 9.7 134 178-322 348-482 (494)
325 1s6c_A KV4 potassium channel-i 35.8 1.4E+02 0.0049 23.3 7.9 8 280-287 142-149 (183)
326 3eyy_A Putative iron uptake re 35.7 1E+02 0.0035 23.7 6.5 59 285-345 8-66 (145)
327 2r9g_A AAA ATPase, central reg 35.1 1.9E+02 0.0064 23.7 9.1 30 240-270 28-57 (204)
328 1qsa_A Protein (soluble lytic 34.8 3.5E+02 0.012 26.8 29.9 113 276-395 229-347 (618)
329 2r9g_A AAA ATPase, central reg 34.7 1.9E+02 0.0064 23.7 10.1 62 267-329 17-86 (204)
330 2nsz_A Programmed cell death p 34.7 1.4E+02 0.0049 22.3 9.6 61 159-219 10-72 (129)
331 3eyy_A Putative iron uptake re 34.1 90 0.0031 23.9 6.0 61 250-312 8-68 (145)
332 3jxi_A Vanilloid receptor-rela 34.0 1.9E+02 0.0066 24.2 8.9 19 200-218 12-30 (260)
333 3b7b_A Euchromatic histone-lys 33.8 39 0.0013 28.2 4.3 17 484-500 218-234 (237)
334 3bge_A Predicted ATPase; struc 33.8 1.9E+02 0.0066 23.5 8.7 20 240-259 21-40 (201)
335 1mzb_A Ferric uptake regulatio 33.6 92 0.0031 23.5 5.9 60 287-347 9-69 (136)
336 2d2s_A Exocyst complex compone 33.6 2.2E+02 0.0074 24.0 9.2 91 373-466 24-119 (235)
337 2pnn_A Transient receptor pote 33.1 55 0.0019 28.1 5.2 21 236-256 20-40 (273)
338 4gq2_M Nucleoporin NUP120; bet 32.7 2E+02 0.0069 30.4 10.1 48 263-310 899-950 (950)
339 3ltm_A Alpha-REP4; protein eng 32.6 2E+02 0.0067 23.2 17.0 81 224-312 62-142 (211)
340 1ug3_A EIF4GI, eukaryotic prot 32.5 2.8E+02 0.0095 24.9 11.2 26 264-289 14-39 (339)
341 4fke_A Aminopeptidase N; zinc 32.5 4.6E+02 0.016 27.5 15.3 92 194-290 690-787 (909)
342 2keb_A DNA polymerase subunit 32.2 1.3E+02 0.0046 21.2 6.6 31 245-275 28-58 (101)
343 3bge_A Predicted ATPase; struc 32.0 2.1E+02 0.0071 23.4 8.0 55 273-327 19-78 (201)
344 1lsh_A Lipovitellin (LV-1N, LV 31.9 5E+02 0.017 27.8 22.3 77 136-217 289-366 (1056)
345 3mv2_A Coatomer subunit alpha; 31.8 2.8E+02 0.0095 24.7 12.7 53 277-329 186-240 (325)
346 2w57_A Ferric uptake regulatio 31.7 1.1E+02 0.0039 23.6 6.2 62 285-347 6-68 (150)
347 1bd8_A P19INK4D CDK4/6 inhibit 31.2 73 0.0025 24.2 5.2 6 485-490 142-147 (156)
348 3rjo_A Endoplasmic reticulum a 31.0 3.3E+02 0.011 25.3 17.4 166 194-364 201-374 (419)
349 2xig_A Ferric uptake regulatio 31.0 1.8E+02 0.0062 22.3 8.6 58 182-240 18-75 (150)
350 1wgl_A TOLL-interacting protei 30.7 51 0.0017 20.8 3.2 22 274-295 36-57 (59)
351 2w57_A Ferric uptake regulatio 30.5 1.1E+02 0.0036 23.7 5.9 62 250-312 6-68 (150)
352 4b4t_S RPN3, 26S proteasome re 30.3 3.8E+02 0.013 25.8 11.1 63 370-432 234-299 (523)
353 3ctd_A Putative ATPase, AAA fa 30.1 2.3E+02 0.008 23.3 9.8 54 274-327 48-106 (213)
354 2ijq_A Hypothetical protein; s 29.8 1.9E+02 0.0063 22.8 7.0 53 272-324 43-103 (161)
355 4fke_A Aminopeptidase N; zinc 29.5 5.1E+02 0.018 27.1 16.9 160 335-500 690-858 (909)
356 2jul_A Calsenilin; EF-hand, ca 29.0 1.7E+02 0.0059 24.7 7.7 147 173-323 91-256 (256)
357 4ets_A Ferric uptake regulatio 29.0 1.7E+02 0.0057 23.0 6.8 70 278-348 14-86 (162)
358 2etb_A Transient receptor pote 28.4 1.4E+02 0.0047 25.1 7.0 55 232-287 5-69 (256)
359 3bu8_A Telomeric repeat-bindin 28.2 2.6E+02 0.0088 23.2 7.6 48 171-218 87-142 (235)
360 3ltj_A Alpharep-4; protein eng 27.7 2.3E+02 0.0079 22.5 18.8 122 189-324 58-179 (201)
361 3t8k_A Uncharacterized protein 27.4 2.3E+02 0.008 22.5 8.4 134 373-506 41-184 (186)
362 3ygs_P Procaspase 9; apoptosis 27.3 94 0.0032 21.9 4.6 37 170-209 51-87 (97)
363 2yru_A Steroid receptor RNA ac 27.1 1.9E+02 0.0065 21.3 7.8 42 283-324 48-89 (118)
364 3aji_A 26S proteasome non-ATPa 27.1 1.6E+02 0.0055 24.1 7.0 52 232-284 9-60 (231)
365 1mzb_A Ferric uptake regulatio 26.5 1.8E+02 0.0063 21.8 6.5 36 241-276 33-68 (136)
366 3kae_A CDC27, possible protein 26.5 2.5E+02 0.0085 22.5 7.8 30 296-325 114-143 (242)
367 2p1h_A APAF-1, apoptotic prote 26.2 1.6E+02 0.0056 20.3 6.8 32 204-240 50-81 (94)
368 2dod_A Transcription elongatio 25.8 71 0.0024 21.8 3.5 33 206-239 16-48 (82)
369 3ctd_A Putative ATPase, AAA fa 25.3 2.9E+02 0.0098 22.8 8.5 38 238-275 47-84 (213)
370 2ijq_A Hypothetical protein; s 24.7 2.5E+02 0.0087 22.0 8.4 14 486-499 88-101 (161)
371 2o03_A Probable zinc uptake re 24.5 1E+02 0.0036 23.0 4.7 48 301-348 15-62 (131)
372 1z5h_A Tricorn protease intera 24.0 4E+02 0.014 27.3 10.3 86 336-431 591-677 (780)
373 3ygs_P Procaspase 9; apoptosis 24.0 1.9E+02 0.0065 20.3 6.5 32 276-311 52-83 (97)
374 2rfa_A Transient receptor pote 23.9 2.9E+02 0.01 22.4 9.3 28 479-506 157-184 (232)
375 3kae_A CDC27, possible protein 23.6 2.8E+02 0.0097 22.1 7.4 27 262-288 115-141 (242)
376 1wty_A Hypothetical protein TT 23.4 2E+02 0.0068 21.0 6.0 64 243-312 5-69 (119)
377 3mwm_A ZUR, putative metal upt 22.8 93 0.0032 23.7 4.1 47 301-347 18-64 (139)
378 2xdt_A Endoplasmic reticulum a 22.8 6.7E+02 0.023 26.2 15.8 157 194-357 684-849 (897)
379 4gq2_M Nucleoporin NUP120; bet 22.4 5.9E+02 0.02 26.8 11.5 26 441-466 900-925 (950)
380 3hra_A Ankyrin repeat family p 22.2 2.9E+02 0.0099 21.7 8.6 36 457-492 157-194 (201)
381 1uzc_A Hypothetical protein FL 22.1 80 0.0027 20.8 3.1 32 206-238 14-45 (71)
382 1oai_A Nuclear RNA export fact 22.0 62 0.0021 20.4 2.4 23 203-225 33-55 (59)
383 2dzn_A Probable 26S proteasome 21.4 1.6E+02 0.0056 23.9 6.0 14 167-180 10-23 (228)
384 1bd8_A P19INK4D CDK4/6 inhibit 21.4 80 0.0027 24.0 3.7 13 273-285 11-23 (156)
385 2p22_A Suppressor protein STP2 21.2 91 0.0031 24.9 3.8 59 434-493 107-165 (174)
386 2o03_A Probable zinc uptake re 20.9 1.6E+02 0.0053 22.0 5.1 47 266-312 15-61 (131)
387 3f3f_C Nucleoporin NUP85; stru 20.9 3E+02 0.01 26.8 7.9 88 191-281 480-569 (570)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-33 Score=286.63 Aligned_cols=401 Identities=9% Similarity=-0.066 Sum_probs=297.0
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010292 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161 (513)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 161 (513)
.+..++..+.. .++..++...+.++. +..|+..++..+...+ .++.+.|..+|+.+.. .+++..+++.
T Consensus 86 ~~~~~~~~~~~-~g~~~~A~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 155 (597)
T 2xpi_A 86 YLRLWRHDALM-QQQYKCAAFVGEKVL----DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-----YNRSSACRYL 155 (597)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-----GGTCHHHHHH
T ss_pred HHHHHHHHHHH-ccCchHHHHHHHHHH----hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-----cccchhHHHH
Confidence 34455555433 345566666665543 3356667777666666 4577788888876533 3567888888
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhc---------------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----
Q 010292 162 GIKFAGRINNVDLAADLFAEAANK---------------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN---- 221 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~---------------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g---- 221 (513)
++.+|.+.|++++|.++|+++... +.+ +..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 888888888888888888843222 122 477888888888888888888888888765410
Q ss_pred -----------------------------------------------------------------CCCCHHHHHHHHHHH
Q 010292 222 -----------------------------------------------------------------ISPSIVTYNTLISVF 236 (513)
Q Consensus 222 -----------------------------------------------------------------~~p~~~~~~~li~~~ 236 (513)
..++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 025666677777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
.+.|++++|..+|+++.+.+. .+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777777776543 256667777777777777777777777776432 346788888888888888888888
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.+.++.+.+..+.+...+. .++.+|.+.|++++|.++|+++.+.
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL--FLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH--HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH--HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888887752 346778888888888888888888887777666655554442 5888888888999999888888874
Q ss_pred CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010292 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470 (513)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 470 (513)
. +.+..+|+.++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +
T Consensus 471 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 471 F--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp C--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred C--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 3 445677888888888999999999888888765 55676 6788888888999999999999998888766 5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 471 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+..+|..+..+|.+.|++++|.++|+++.+.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 57888888889999999999999988888764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-33 Score=283.07 Aligned_cols=373 Identities=9% Similarity=-0.088 Sum_probs=300.8
Q ss_pred CchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010292 118 SNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195 (513)
Q Consensus 118 p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (513)
++...|..++..+ .++++.|..+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... .++..+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHH
Confidence 5777888998887 4688999999999875 4468899999999999999999999999998643 248899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010292 196 LLGAYMYNGLSDKCQSLFRDLKKEA--------------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--- 258 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--- 258 (513)
++.+|.+.|++++|+++|+++.... |..++..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 9999999999999999999643321 23446899999999999999999999999999765421
Q ss_pred -------------------------------------------------------------------CCHHHHHHHHHHH
Q 010292 259 -------------------------------------------------------------------PNVFTYNYLIAGY 271 (513)
Q Consensus 259 -------------------------------------------------------------------p~~~~~~~li~~~ 271 (513)
++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 4566667777777
Q ss_pred HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
.+.|++++|.++|++|.+.+. .+..++..++.++.+.|++++|.++++.+.+. .+.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777777765442 25566777777777777777777777777654 3457788888999999999998888
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010292 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 431 (513)
+.++.+.++.+.+...|. .++.+|.+.|++++|+++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWI--GFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887777666655555553 58889999999999999999988743 44566788899999999999999999999887
Q ss_pred cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY----KIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 432 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 470 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 470 LFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 653 36788999999999999999999999998776 66777 7889999999999999999999999988764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-32 Score=271.21 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=180.9
Q ss_pred HHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCC---------
Q 010292 137 ALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGL--------- 205 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~--------- 205 (513)
+..+...+++.. .... ...++.+|.+|++.|++++|+++|++|.+.|++ |..+||+||.+|++.+.
T Consensus 9 ~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 9 SENLSRKAKKKA---IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred HHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 334444444332 3333 346889999999999999999999999999994 99999999999998765
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010292 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (513)
+++|.++|++|... |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|+
T Consensus 86 l~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 68899999999986 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
+|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998864
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1e-30 Score=257.19 Aligned_cols=206 Identities=15% Similarity=0.118 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 010292 173 DLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL--------- 241 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--------- 241 (513)
..+..+.+++.+++.. +...++.+|.+|++.|++++|+++|++|.+. |++||..|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4456666777777764 3457899999999999999999999999987 999999999999999998765
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010292 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 321 (513)
++.|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc
Q 010292 322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE 380 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 380 (513)
|.+.|+.||..+|++||.+|++.|++++|.++++.|++........ ++..++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~-T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS-TFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH-HHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHHhcC
Confidence 9999999999999999999999998887777666665543332222 345677777654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.5e-25 Score=214.77 Aligned_cols=357 Identities=10% Similarity=-0.063 Sum_probs=301.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|.+.+..+.+. .|.+...+..+...+.+.|++++|...++...+..+.+..+|..+...|.+.|++++|+
T Consensus 12 ~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 56888899988877664 34467777888888899999999999999988877668999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+.|+++.+. .+.+..+|..+..++.+.|++++|...|+++.+... -+...+..+...+...|++++|.++|+++.+.
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999874 234466899999999999999999999999988643 24566777888888999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010292 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
. +-+..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++......+.....+
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-- 240 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-- 240 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH--
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH--
Confidence 3 2247899999999999999999999999998864 34677888999999999999998888776666655544444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010292 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 450 (513)
..+...|...|++++|.+.|+++++. .|.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+++.+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 25888999999999999999999884 34556678999999999999999999999998764 3467889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.|++++|...++++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999998764 556888999999999999999999999999864
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.9e-24 Score=203.51 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=293.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|..+++...+. .+.+..+|..+..+|.+.|++++|.+.|+++.+..+.+..+|..+..++.+.|++++|+
T Consensus 46 ~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 121 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121 (388)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred cCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 67889999999877764 45688999999999999999999999999999887668889999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 211 SLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+.|+++.+. .|+ ...+..+...+...|++++|...|+++.+... -+..+|+.+...+.+.|++++|.+.|+++.+
T Consensus 122 ~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 122 QAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999975 354 56777888999999999999999999998643 3678999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010292 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369 (513)
Q Consensus 290 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (513)
.+ +-+...|..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.++...+..+.....+
T Consensus 198 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 274 (388)
T 1w3b_A 198 LD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY- 274 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH-
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-
Confidence 54 2247889999999999999999999999988763 34678899999999999999999988887777665544444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 449 (513)
..+...+.+.|++++|.+.|+++++. .|.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|.
T Consensus 275 -~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 275 -CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ 350 (388)
T ss_dssp -HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 35889999999999999999999985 45567789999999999999999999999998654 335778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (513)
+.|++++|...|+++.+.. +-+...|..+...+...|
T Consensus 351 ~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 9999999999999999764 446677777777776655
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.8e-21 Score=191.60 Aligned_cols=339 Identities=9% Similarity=0.001 Sum_probs=249.0
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
+.+...+..+...+.+.|++++|.++|+++.+..+.+..+|..+..+|...|++++|++.|+++.+. -+.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 3456677777778888888888888888887766557778888888888888888888888888764 23456777888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHH------------HHHHHccCHHHHHHHHHHHHcCCCCCCH
Q 010292 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPN-V---FTYNYLI------------AGYMTAWMWGKVEEIYQMMKAGPVMPDT 296 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 296 (513)
..++.+.|++++|...|+++.+.. |+ . ..+..+. ..+.+.|++++|.++|+++.+.. ..+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 888888888888888888887653 33 3 4555443 33777888888888888877643 2357
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH------
Q 010292 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN------ 370 (513)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------ 370 (513)
.++..+..++.+.|++++|.++|+.+.+.. +.+..++..+...|...|++++|...++......+.....+..
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 778888888888888888888888877653 3466777888888888888887777776666554444333210
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHH
Q 010292 371 ----VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444 (513)
Q Consensus 371 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 444 (513)
..+...|...|++++|.+.|+++++.....+. ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 01378889999999999999999885433222 3468888999999999999999999987654 2367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CHhHHHHHHHHH
Q 010292 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA------------YATCG-----QRRKVNQVLGLM 499 (513)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m 499 (513)
..+|...|++++|...|+++.+.. +-+...+..+..+ |...| +.+++.+.++++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999998754 3355666666633 33344 556667777763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-21 Score=195.54 Aligned_cols=358 Identities=8% Similarity=-0.078 Sum_probs=294.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++++.|...|+.+.+.. |+...|..+..++.+.|++++|.+.|+++.+.++.+..+|..+..+|.+.|++++|+
T Consensus 19 ~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccHHHHHHHHHHHHhcC-----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH
Confidence 568889999999888743 588999999999999999999999999999887668889999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-----------------------------------------------------------------
Q 010292 211 SLFRDLKKEANISPS----------------------------------------------------------------- 225 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~----------------------------------------------------------------- 225 (513)
..|+++... + +++
T Consensus 94 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 94 FDLSVLSLN-G-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHS-S-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHhc-C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999988754 2 111
Q ss_pred --------------HHHHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHHcc
Q 010292 226 --------------IVTYNTLISVFGR---LLLVDHMEAAFQEIKD-----SNLS--------PNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 226 --------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~li~~~~~~g 275 (513)
...+......+.. .|++++|..+|+++.+ ..-. .+..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 2333333333443 8999999999999987 3111 23567888899999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
++++|.++|+++.+.. |+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...++
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998754 448889999999999999999999999998863 3467788999999999999999999888
Q ss_pred HHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Q 010292 356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 435 (513)
......+.....+ ..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+....
T Consensus 329 ~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 329 KAKELDPENIFPY--IQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHTCSSCSHHH--HHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhChhhHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 8777766655444 258889999999999999999998854 334456888999999999999999999988754321
Q ss_pred -cc----HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 436 -LC----RSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 436 -~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
++ ...+..+...+.. .|++++|...++++.+.+ +.+..++..+...|.+.|++++|.+.|++..+..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 3378889999999 999999999999998865 5577889999999999999999999999987653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.1e-21 Score=189.81 Aligned_cols=318 Identities=8% Similarity=-0.062 Sum_probs=258.4
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
.+...+.+.....+.+...|..+...+.+.|++++|+.+|+++.+. .+.+..+|..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555554558899999999999999999999999999975 35678999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH----HHHHHH------------HHHHHhcCChHHHHH
Q 010292 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT----NTYLLL------------LRGYAHSGNLPRMEK 317 (513)
Q Consensus 254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~ 317 (513)
+.+. .+..+|..+..+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|.+
T Consensus 88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8754 36889999999999999999999999999984 3553 555555 444889999999999
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010292 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
+++.+.+.. +.+..++..+..+|.+.|++++|.+.++...+..+.....+ ..+...|...|++++|.+.|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998863 45788899999999999999999888887766655554444 268899999999999999999998753
Q ss_pred CCCchHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCc-cc--HhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292 398 TSVTTVRIMRCI------------VSSYFRCNAVDKLANFVKRAESAGWR-LC--RSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 398 ~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
|.+...+..+ ...|.+.|++++|..+++.+.+.... +. ...|..+...+.+.|++++|...++
T Consensus 242 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 --QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344445444 88999999999999999999875422 11 4578889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
++.+.. +.+...|..+..+|...|++++|.+.++++.+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 998765 457899999999999999999999999999874
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-19 Score=181.78 Aligned_cols=337 Identities=7% Similarity=-0.144 Sum_probs=276.3
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...+......+.+.|++++|.+.|+++.+.+ |+...|..+..+|.+.|++++|++.|+++.+. .+.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHH
Confidence 4466777888999999999999999999876 48899999999999999999999999999975 24567899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC--------------------------------------------------------
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSP-------------------------------------------------------- 259 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p-------------------------------------------------------- 259 (513)
+.+.|++++|...|+++.+.+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998764210
Q ss_pred ----------------------CHHHHHHHHHHHHH---ccCHHHHHHHHHHHHc-----CCCC--------CCHHHHHH
Q 010292 260 ----------------------NVFTYNYLIAGYMT---AWMWGKVEEIYQMMKA-----GPVM--------PDTNTYLL 301 (513)
Q Consensus 260 ----------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~t~~~ 301 (513)
+...+......+.. .|++++|..+|+++.+ ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12333333333443 7999999999999887 3111 23578888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010292 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 381 (513)
+...+...|++++|.++++.+.+.... ...+..+...|...|+++.|...++......+.....+ ..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--YHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH--HHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH--HHHHHHHHHhC
Confidence 999999999999999999999887543 88889999999999999998888877776665554444 35888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010292 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (513)
++++|...|++..+.. +.+...+..+...+...|++++|..+++.+.+... .+...+..+...|.+.|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998854 33455788899999999999999999999887543 25677888999999999999999999
Q ss_pred HHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHC
Q 010292 462 KEMENYKID-CS----KKTFWIMYYAYAT---CGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 462 ~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 502 (513)
+++.+..-. ++ ...|..+...|.. .|++++|.+.++++.+.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 998764311 11 3489999999999 99999999999998765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=4.8e-19 Score=178.31 Aligned_cols=360 Identities=11% Similarity=-0.009 Sum_probs=277.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|...|+.+.+.. |.+..+|..+..+|.+.|++++|.+.|+++.+.++.+..+|..+..++...|++++|+
T Consensus 38 ~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 567788888888877653 4578888888999999999999999999988877668888889999999999999999
Q ss_pred HHHHHHHHhC-----------------------------------CCCCCHHH---------------------------
Q 010292 211 SLFRDLKKEA-----------------------------------NISPSIVT--------------------------- 228 (513)
Q Consensus 211 ~~~~~m~~~~-----------------------------------g~~p~~~~--------------------------- 228 (513)
+.|+.+.... ...|+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 8886432110 00111111
Q ss_pred ---HHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 229 ---YNTLISVFG--------RLLLVDHMEAAFQEIKDSNLSPN-------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 229 ---~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
...+...+. ..|++++|..+|+++.+.... + ..+|..+...+...|++++|.+.|++..+.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 111111111 124788999999999875432 2 335777778888999999999999999884
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010292 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
.|+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|+++.|...++...+..+.....+.
T Consensus 273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~- 348 (537)
T 3fp2_A 273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI- 348 (537)
T ss_dssp --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH-
T ss_pred --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence 4678889999999999999999999999998864 456788999999999999999999988877776666554442
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----cHhhHHHHH
Q 010292 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----CRSLYHSKM 445 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li 445 (513)
.+...+...|++++|.+.++++.+.. |.+..++..+...+...|++++|.+.++++.+..... ....+....
T Consensus 349 -~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 349 -QLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 58899999999999999999998854 4445678889999999999999999999986543211 111233445
Q ss_pred HHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 446 VMYASQ----------RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 446 ~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
..+.+. |++++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 667777 99999999999998875 5577889999999999999999999999987653
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.1e-18 Score=163.86 Aligned_cols=324 Identities=8% Similarity=-0.040 Sum_probs=222.5
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|...+..+...+.+.|++++|.+.|+++.+..+.+...|..+...+...|++++|+..|+++.+. .+-+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 34556667777777777777777777777766556777777777777777777777777777754 1335567777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYL------------IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
.+...|++++|...|++..+.... .+...+..+ ...+...|++++|.++|+++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 777777777777777777764320 133334333 466677777777777777776643 23566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch----------H
Q 010292 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL----------N 370 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~ 370 (513)
.+...+...|++++|.+.++.+.+. .+.+...+..+...|...|++++|...++...+..+.....+. .
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence 7777777777777777777777765 2345666777777777777777777666655555444433221 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010292 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV--RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 448 (513)
..+...+...|++++|.+.+++..+.....+.. ..+..+...+...|++++|.+.+++..+.. +.+...+..+...|
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 023566888899999999998888754332211 235557778888999999999999887754 22567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
.+.|++++|...|++..+.+ +-+...+..+..+..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 89999999999999988765 334555655555544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.3e-17 Score=158.41 Aligned_cols=303 Identities=7% Similarity=-0.049 Sum_probs=251.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
++..|..+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|...|+++.+... -+...|..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence 4567888899999999999999999999875 345688999999999999999999999999998643 3678999999
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMP----DTNTYLLL------------LRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (513)
..+...|++++|.+.|++..+. .| +...+..+ ...+...|++++|.++++.+.+.. +.+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 9999999999999999999884 35 34444444 578899999999999999998863 45778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH-----
Q 010292 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR----- 407 (513)
Q Consensus 333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 407 (513)
.+..+...+...|+++.|...++...+..+.....+ ..+...+...|++++|.+.|++..+..... ...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~ 231 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCccc--hHHHHHHHHH
Confidence 899999999999999999888887777665555444 258889999999999999999998854433 33232
Q ss_pred -------HHHHHHHhcCcHHHHHHHHHHHHhcCCcccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010292 408 -------CIVSSYFRCNAVDKLANFVKRAESAGWRLCR----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476 (513)
Q Consensus 408 -------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 476 (513)
.+...+...|++++|...++++.+.... +. ..+..+...+.+.|++++|...+++..+.+ +.+..+|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 2366788999999999999998875533 22 235567788999999999999999998865 4578899
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 477 WIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
..+...|...|++++|.+.|++..+..
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999998753
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.5e-21 Score=193.79 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=123.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE--ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
-..+||+||.+||+.|++++|.++|++|.+. .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3568999999999999999999999887631 27899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc------HHHHHHHHH
Q 010292 267 LIAGYMTAWMW-GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE------FPLIRAMIC 339 (513)
Q Consensus 267 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 339 (513)
||+++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+ +++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999974 789999999999999999999999987766543 33333333 2233333 445566777
Q ss_pred HHHhcC
Q 010292 340 AYSKCS 345 (513)
Q Consensus 340 ~~~~~g 345 (513)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.2e-17 Score=167.96 Aligned_cols=336 Identities=7% Similarity=-0.069 Sum_probs=259.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...|..+...+.+.|++++|.+.|+++.+..+.+..+|..+..+|.+.|++++|++.|+++.+. -+.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 4567778888999999999999999999988779999999999999999999999999999975 24567899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCC------------------------------------CCCHH-----------------
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNL------------------------------------SPNVF----------------- 262 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~------------------------------------~p~~~----------------- 262 (513)
+...|++++|...|+.+....- .|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999999964421100 01111
Q ss_pred -------------HHHHHHHHHH--------HccCHHHHHHHHHHHHcCCCCCC--------HHHHHHHHHHHHhcCChH
Q 010292 263 -------------TYNYLIAGYM--------TAWMWGKVEEIYQMMKAGPVMPD--------TNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 263 -------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~~ 313 (513)
....+...+. ..|++++|..+|+++.+.. |+ ..++..+...+...|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 1247889999999988743 44 335777778888999999
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 393 (513)
+|.+.++.+.+.. |+...+..+...|...|+++.|.+.++...+..+.....+ ..+...+...|++++|.+.|++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTY--YHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998864 4477888899999999999999888877776665554444 25888899999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 010292 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK----- 468 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 468 (513)
.+... .+...+..+...+...|++++|.++++++.+... .+...+..+...|...|++++|...|+++.+.+
T Consensus 337 ~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCT--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 88543 3445688899999999999999999999887653 356678888999999999999999999887642
Q ss_pred CCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHC
Q 010292 469 IDCSKKTFWIMYYAYATC----------GQRRKVNQVLGLMCKN 502 (513)
Q Consensus 469 ~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 502 (513)
.......+..+...+... |++++|...+++..+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 112233345556777787 9999999999998765
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=5.2e-21 Score=193.30 Aligned_cols=160 Identities=11% Similarity=0.096 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010292 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKD---SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 301 (513)
-..|||+||++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456999999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--------cchHHH
Q 010292 302 LLRGYAHSGNL-PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--------PWLNVL 372 (513)
Q Consensus 302 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~ 372 (513)
||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+ +++.++++.+ +.. ..+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~-------vL~~Vrkv~P-~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-------VLKAVHKVKP-TFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH-------HHHHHGGGCC-CCCCCCCCCCCCCCCTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH-------HHHHHHHhCc-ccCCCCCCcccccchHH
Confidence 99999999985 789999999999999999999999998776643 4444555432 111 112235
Q ss_pred HHHHHHhcC---------CHHHHHHHHHH
Q 010292 373 LIRVYAKED---------CLEEMEKSIND 392 (513)
Q Consensus 373 li~~~~~~~---------~~~~a~~~~~~ 392 (513)
|.+.|.+.+ ..++-.+.|++
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 677777655 24566666654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.7e-17 Score=153.39 Aligned_cols=295 Identities=8% Similarity=-0.058 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
.+.+...+..+...+...|++++|.++|+++.+..+.+...+..++..+...|++++|..+++++.+. .+.+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 34456677778888888899999999999888877667778888888888889999999999988875 2445678888
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292 232 LISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 232 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
+...+...| ++++|...|++..+... .+...|..+...+...|++++|.+.|++..+..- .+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 888888888 88889998888887543 3567788888888888888888888888876431 23566667888888888
Q ss_pred ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010292 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
++++|.+.++...+.. +.+...+..+...|...|++++ |...+
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~------------------------------------A~~~~ 216 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKT------------------------------------AEKWF 216 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH------------------------------------HHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHH------------------------------------HHHHH
Confidence 8888888888877753 2344455555555555555554 44444
Q ss_pred HHHHhcC-------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 391 NDAFEHK-------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 391 ~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
++..... ..+....++..+...+...|++++|...+++..+.... +...+..+...|.+.|++++|...|++
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4433311 01223345666777777777777777777777655422 456667777777778888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHH-HhcCCH
Q 010292 464 MENYKIDCSKKTFWIMYYAY-ATCGQR 489 (513)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~-~~~g~~ 489 (513)
..+.. +.+...+..+..++ ...|+.
T Consensus 296 al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 296 ALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHccC-CCchHHHHHHHHHHHHHhCch
Confidence 77654 34566666666666 344443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=9.9e-18 Score=160.04 Aligned_cols=306 Identities=10% Similarity=-0.044 Sum_probs=186.5
Q ss_pred HhcccCCHHHHHH-HHHHHHhccCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010292 165 FAGRINNVDLAAD-LFAEAANKHLK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 165 ~~~~~g~~~~a~~-~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
.+.-.|++++|.+ .|++....... +...+..+...+.+.|++++|+..|+++.+. .+.+..+|..+..++.+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 3445567777776 66654433221 2455667777777777777777777777753 244566777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 010292 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
|++++|...|+++.+... .+..+|..+...+...|++++|.+.|+++.... |+. ..+..+... ...
T Consensus 112 g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~--- 178 (368)
T 1fch_A 112 EQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AGG--- 178 (368)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------
T ss_pred cCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hhh---
Confidence 777777777777766543 356677777777777777777777777776633 221 111111000 000
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
..+ ...+. .+..+...|++++|...++...+..+....+..+..+...|...|++++|...|++++..
T Consensus 179 --------~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 246 (368)
T 1fch_A 179 --------AGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-- 246 (368)
T ss_dssp ----------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred --------hcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 000 00000 111122445555555544444443333212222234677777888888888888887774
Q ss_pred CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------
Q 010292 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID-------- 470 (513)
Q Consensus 399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------- 470 (513)
.|.+..++..+...+...|++++|...++++.+... .+...+..+...|.+.|++++|...|+++.+..-.
T Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 344566788888899999999999999998876542 35677888889999999999999999888764311
Q ss_pred --CCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292 471 --CSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 471 --p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
....+|..+..+|...|++++|..++++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1267899999999999999999888763
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=7.5e-16 Score=144.38 Aligned_cols=267 Identities=9% Similarity=-0.032 Sum_probs=197.8
Q ss_pred chhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
+............++.+.|..+++.+.+.. +.+...+..++..+.+.|++++|..+++++.+..+.+...|..+..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 333333333333679999999999887753 3456677778889999999999999999999987778899999999
Q ss_pred HHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010292 199 AYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 199 ~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
.+...| ++++|.+.|++..+. .+.+...|..+...+...|++++|...|++..+.... +...+..+...|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 999999 999999999999864 2445788999999999999999999999999986543 467777799999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC--------CCcHHHHHHHHHHHHhcCChhH
Q 010292 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD--------GKEFPLIRAMICAYSKCSVTDR 349 (513)
Q Consensus 278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~ 349 (513)
++|.+.|++..+.. ..+...+..+...+...|++++|.+.++...+... +....++..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998854 33578999999999999999999999998876421 2233455555555555555555
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
|...++...+..+.....+. .+...|...|++++|.+.|++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYS--AIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHH--HHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHH--HHHHHHHHhccHHHHHHHHHHHHc
Confidence 55544444433333222221 344444555555555555544443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.7e-17 Score=156.02 Aligned_cols=289 Identities=10% Similarity=-0.012 Sum_probs=188.7
Q ss_pred CChHHHHH-HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010292 132 SRPRLALE-VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 132 ~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
++.+.|.. .++...+........+...+..+...+.+.|++++|...|+++.+..+.+..+|..+...+...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555665 55533222111111135667888999999999999999999999987778999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHcc
Q 010292 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY---------------LIAGYMTAW 275 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g 275 (513)
+.|+++.+. .+.+..++..+...+...|++++|...|+++.+.... +...+.. .+..+...|
T Consensus 119 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 119 SALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 999999975 2557889999999999999999999999999986532 2222211 233333777
Q ss_pred CHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010292 276 MWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 354 (513)
++++|.++|+++.+.... ++..++..+...+...|++++|.+.++.+.+.. +.+...+..
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~------------------ 256 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK------------------ 256 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH------------------
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH------------------
Confidence 777777777777663211 136677777777777777777777777766642 223334444
Q ss_pred HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292 355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 434 (513)
+...+...|++++|...|+++++. .|.+...+..+...|...|++++|...++++.+...
T Consensus 257 ------------------l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 257 ------------------LGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp ------------------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 444455555555555555555543 233444566666666666666666666666543221
Q ss_pred cc----------cHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292 435 RL----------CRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 435 ~~----------~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
.. ....|..+..+|...|++++|..+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 10 14556666667777777777666654
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=1.2e-13 Score=137.21 Aligned_cols=339 Identities=10% Similarity=-0.033 Sum_probs=272.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY---- 202 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~---- 202 (513)
.++.+.|...|+...+.+ +...+..|-..|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC
Confidence 457888988888877643 67788888888888 899999999999988765 66778888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 010292 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----A 274 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 274 (513)
.+++++|++.|++.... | +...+..|...|.. .++.++|...|++..+.| +...+..+...|.. .
T Consensus 128 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC
Confidence 78999999999999864 3 67788888888887 789999999999998864 78888888888888 8
Q ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCC
Q 010292 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSV 346 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 346 (513)
++.++|.++|++..+.| +...+..+...|.. .+++++|.+.|+...+.+ +...+..+-..|.. .++
T Consensus 201 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999998865 67788888888886 789999999999988864 45566667777776 777
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---c
Q 010292 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-----DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---A 418 (513)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~ 418 (513)
.++|.+.++...+. +.... ...+...|... +++++|.+.|++..+.+. ...+..+...|...| +
T Consensus 275 ~~~A~~~~~~a~~~---~~~~a-~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 275 PLKALEWYRKSAEQ---GNSDG-QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----ATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp HHHHHHHHHHHHTT---TCHHH-HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHc---CCHHH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCccc
Confidence 77666655544332 22222 22466677766 899999999999888642 334666777777756 8
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHh
Q 010292 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRR 490 (513)
Q Consensus 419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 490 (513)
.++|.+++++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.+ .++++
T Consensus 347 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 899999999998775 56677788888888 899999999999999876 46778889999988 89999
Q ss_pred HHHHHHHHHHHCCC
Q 010292 491 KVNQVLGLMCKNGY 504 (513)
Q Consensus 491 ~A~~~~~~m~~~g~ 504 (513)
+|.++|++..+.|.
T Consensus 421 ~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 421 QAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999887763
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.9e-16 Score=151.04 Aligned_cols=235 Identities=9% Similarity=-0.066 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+...+..+...+.+.|++++|.++|+++.+..+.+..+|..+...|...|++++|++.|+++.+. .+.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 44557888888899999999999999998877668889999999999999999999999998875 2445788899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLS---------PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLR 304 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~ 304 (513)
++...|++++|...|+++.+.... .....+..+...+.+.|++++|.++|+++.+..-. .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999988864211 01223344567778888888888888888774311 25777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHH
Q 010292 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE 384 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 384 (513)
.+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...++...+..+.....+ ..+..+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR--YNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH--HHHHHHHHHCCCHH
Confidence 8888888888888888877652 23455555555555555555544444443333322222222 12344444444444
Q ss_pred HHHHHHHHHH
Q 010292 385 EMEKSINDAF 394 (513)
Q Consensus 385 ~a~~~~~~~~ 394 (513)
+|...|++.+
T Consensus 299 ~A~~~~~~al 308 (365)
T 4eqf_A 299 EAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=8e-17 Score=153.63 Aligned_cols=266 Identities=9% Similarity=-0.077 Sum_probs=179.4
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...|..+...+.+.|++++|+++|+++.+. .+.+..+|..+...+.+.|++++|+..|+++.+... .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 5566899999999999999999999999975 355788999999999999999999999999988643 3688999999
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHH
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMPD-----------TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRA 336 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 336 (513)
..|.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.++++++.+..... +..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999987632 22 2233445667777777777777777776653211 3444443
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010292 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416 (513)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (513)
+...|...|++++|.+.|++.++.. |.+..+|..+...|...
T Consensus 219 ------------------------------------l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 219 ------------------------------------LGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANG 260 (365)
T ss_dssp ------------------------------------HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred ------------------------------------HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 4445555566666666666655532 33455566666667777
Q ss_pred CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHh
Q 010292 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI-----------DCSKKTFWIMYYAYAT 485 (513)
Q Consensus 417 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~ 485 (513)
|++++|...++++.+... .+...|..+...|.+.|++++|...|+++.+..- ..+...|..+..++..
T Consensus 261 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 777777777766665432 2355666666677777777777777766654320 0135677777777777
Q ss_pred cCCHhHHHHHHHH
Q 010292 486 CGQRRKVNQVLGL 498 (513)
Q Consensus 486 ~g~~~~A~~~~~~ 498 (513)
.|+.+.+.++.++
T Consensus 340 ~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 340 MDQPELFQAANLG 352 (365)
T ss_dssp HTCHHHHHHHHTT
T ss_pred cCcHHHHHHHHHh
Confidence 7777777666543
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.1e-15 Score=143.13 Aligned_cols=96 Identities=10% Similarity=-0.084 Sum_probs=53.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+.+.|++++|..+|+++.+..+.+...|..+...+...|++++|.+.|+++.+. .+.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHH
Confidence 34444555555566666666666655544445555555555566666666666666655543 1234455555555555
Q ss_pred hcCChhHHHHHHHHHHHC
Q 010292 238 RLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~ 255 (513)
..|++++|...++++.+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS 118 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.7e-15 Score=141.73 Aligned_cols=263 Identities=11% Similarity=-0.017 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
..|..+...+...|++++|+.+|+++.+. .+.+...+..+..++...|++++|...|+++.+... .+..+|..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 34444555555555555555555555543 123444555555555555555555555555554322 244555555555
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhccCCCcHHHH
Q 010292 271 YMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLL--------------LR-GYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 334 (513)
+...|++++|.+.++++.+.. |+ ...+..+ .. .+...|++++|.++++.+.+.. +.+...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 555555555555555554421 11 1111111 11 2444555555555555555442 2244555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010292 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414 (513)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (513)
..+...|...|++++|...++...+..+.....+ ..+...+...|++++|.+.|++..+.. +.+...+..+...|.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW--NKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 5555555555555555555444444333332222 245666666677777777776666532 334455666677777
Q ss_pred hcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 415 RCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 415 ~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
..|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777777777665433221 355666777777777777777777653
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=3.1e-13 Score=135.56 Aligned_cols=217 Identities=7% Similarity=-0.004 Sum_probs=134.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010292 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-------SGNLP-------RMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
+|..+|++..... .-+...|......+.+ .|+++ +|.+++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4455555555421 1245566666665554 57766 7777777777532344567777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHhcCcHHHH
Q 010292 345 SVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS-YFRCNAVDKL 422 (513)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a 422 (513)
|++++|..+++...+..+.+. ..|. .++..+.+.|++++|.++|++.++.... ....|...... +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYI--QYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHH--HHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHH
Confidence 877777777766666544432 2332 4556666777788888888777764322 22222222211 2357778888
Q ss_pred HHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK-IDCS--KKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 423 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++++++
T Consensus 411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887765431 245667777777777788888888888777653 1222 336767777777778888887777776
Q ss_pred HH
Q 010292 500 CK 501 (513)
Q Consensus 500 ~~ 501 (513)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=4.4e-13 Score=133.05 Aligned_cols=320 Identities=8% Similarity=-0.054 Sum_probs=261.4
Q ss_pred CHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCH
Q 010292 155 TKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 155 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
+...+..+-..|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|++.... | +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 77788888888877 899999999999988764 67788899999999 89999999999999874 3 77
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292 227 VTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 227 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t 298 (513)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 788888888888 889999999999999875 67788888888887 789999999999998865 7888
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcccchH
Q 010292 299 YLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 299 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
+..+...|.. .++.++|.+.|+...+.+ +...+..+...|.. .++.++|...++...+. +.... .
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a-~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---GNSIA-Q 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---TCHHH-H
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHH-H
Confidence 8899999988 899999999999988864 55667778888875 67777666665544332 22222 2
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCCcccHhhH
Q 010292 371 VLLIRVYAK----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-----NAVDKLANFVKRAESAGWRLCRSLY 441 (513)
Q Consensus 371 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~ 441 (513)
..+...|.. .++.++|.+.|++..+.+ +...+..+...|... ++.++|...+++..+.+ +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 235566666 789999999999988754 234566677788877 89999999999998876 34566
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010292 442 HSKMVMYASQR---RVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 442 ~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 503 (513)
..+...|...| ++++|++.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 77777777756 8899999999999875 56788889999998 899999999999998876
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=8.3e-18 Score=157.92 Aligned_cols=305 Identities=11% Similarity=0.040 Sum_probs=139.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++.+.|.++++.+ ++..+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|+.
T Consensus 17 ~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3567787777643 24569999999999999999999999653 367799999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 77776653 4667889999999999999999988885 277789999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
..|..+..++.+.|++++|.+.+..+ .+..+|..++.+|...|+++.|..+.. .+. ..+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l---~L~---~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL---HIV---VHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT---TTT---TCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH---HHH---hCHhhHH
Confidence 36999999999999999999999887 378899999999999999998855422 111 1122122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCcc------cHhhHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC--NAVDKLANFVKRAESAGWRL------CRSLYHS 443 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~------~~~~~~~ 443 (513)
.++..|.+.|++++|..+++..+... +....+|+-+.-+|++- +++.+.++.|. .+.+++| +...|.-
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence 58889999999999999999888643 44567777777777764 34444444444 2334444 4667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010292 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490 (513)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 490 (513)
++-.|...++++.|... |.+. +++.---..+.....+..+.+
T Consensus 288 ~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 88899999999988763 4433 233222333444445555543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2.1e-15 Score=138.39 Aligned_cols=278 Identities=8% Similarity=0.003 Sum_probs=186.5
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 163 IKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 241 (513)
|+-....|++..|+..++......+.+ ....-.+.++|...|++++|+..++.. -.|+..++..+...+...|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence 344456688888888777655433222 345566677888888888887755431 24566777777788888888
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010292 242 VDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.++|++.++++...+..| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887766445 445555566777788888888888776 3466777777788888888888888888
Q ss_pred HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010292 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (513)
.+.+.. |+... ..+.. ..+..+...|++++|..+|+++.+. .|
T Consensus 155 ~~~~~~--p~~~~-~~l~~--------------------------------a~~~l~~~~~~~~eA~~~~~~~l~~--~p 197 (291)
T 3mkr_A 155 KMQDQD--EDATL-TQLAT--------------------------------AWVSLAAGGEKLQDAYYIFQEMADK--CS 197 (291)
T ss_dssp HHHHHC--TTCHH-HHHHH--------------------------------HHHHHHHCTTHHHHHHHHHHHHHHH--SC
T ss_pred HHHhhC--cCcHH-HHHHH--------------------------------HHHHHHhCchHHHHHHHHHHHHHHh--CC
Confidence 777653 33211 11111 1222333457888888888888875 35
Q ss_pred chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 010292 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE-MESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
.+..+++.+..++.+.|++++|...++++.+.... +..++..++..+...|+.++ +.++++++.+.+ |+.. .+
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~---~~ 271 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHP---FI 271 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCH---HH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCh---HH
Confidence 56777888888888888888888888888765532 56777778888888888865 567888887654 3322 23
Q ss_pred HHHHHhcCCHhHHHH
Q 010292 480 YYAYATCGQRRKVNQ 494 (513)
Q Consensus 480 i~~~~~~g~~~~A~~ 494 (513)
.+...+.+.++++..
T Consensus 272 ~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 272 KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=5.9e-17 Score=152.20 Aligned_cols=327 Identities=8% Similarity=-0.030 Sum_probs=151.3
Q ss_pred CchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010292 118 SNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195 (513)
Q Consensus 118 p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (513)
++..+|..+.++.. ++.+.|.+.|.. .+|..+|..++..+...|++++|+..++...+ ..+++.+.+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~ 99 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHH
Confidence 44457888877774 467778888853 24777999999999999999999997776665 3556788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010292 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|
T Consensus 100 Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 162 (449)
T ss_dssp ---------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence 9999999999999887773 377789999999999999999999999987 36999999999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|.++++...++
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998 278899999999999999999966554322 233435578899999999998777766
Q ss_pred HHHhCCCCCcccchHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010292 356 LMRLIPEKEYRPWLNVLLIRVYAKE--DCLEEMEKSINDAFEHKTSVT------TVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
.--.+.+.....++ -+.-.|++- +++.+.++.|. .+-..|+ ...+|..+.-.|.+.++++.|....
T Consensus 232 ~aL~le~ah~~~ft--el~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm- 305 (449)
T 1b89_A 232 AALGLERAHMGMFT--ELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM- 305 (449)
T ss_dssp HHTTSTTCCHHHHH--HHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHhCCcHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH-
Confidence 66555544444443 344444443 45555555553 2212221 3456777777888888888776632
Q ss_pred HHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010292 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496 (513)
Q Consensus 428 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (513)
.++ .++..--..+.+...+-.+.+--.+...=..+ -.|.. .+-|+.++...=++..+.++|
T Consensus 306 --~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 306 --MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp --HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHHHHHHHH
T ss_pred --HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcHHHHHHH
Confidence 222 12222233445555666665544444333332 23432 555555554444444444444
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.8e-13 Score=137.30 Aligned_cols=373 Identities=9% Similarity=-0.004 Sum_probs=263.5
Q ss_pred chhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHH
Q 010292 119 NGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197 (513)
Q Consensus 119 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li 197 (513)
+...|..++... .++.+.|..+|+.+.+. .|.+...|..++..+.+.|++++|..+|++..... |+...|...+
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence 455777777654 46888999999988764 56688899999999999999999999999999875 4777888777
Q ss_pred HHH-HHcCChHHHHH----HHHHHHHhCCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHH
Q 010292 198 GAY-MYNGLSDKCQS----LFRDLKKEANISP-SIVTYNTLISVFGR---------LLLVDHMEAAFQEIKDSNLSPNVF 262 (513)
Q Consensus 198 ~~~-~~~g~~~~A~~----~~~~m~~~~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 262 (513)
... ...|+.++|.+ +|+......|..| +...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45678777765 7777766546554 46678877776654 688999999999998731111124
Q ss_pred HHHHHHHHHH-------------HccCHHHHHHHHHHHH------cCC---CCCC--------HHHHHHHHHHHHhc---
Q 010292 263 TYNYLIAGYM-------------TAWMWGKVEEIYQMMK------AGP---VMPD--------TNTYLLLLRGYAHS--- 309 (513)
Q Consensus 263 ~~~~li~~~~-------------~~g~~~~a~~~~~~m~------~~g---~~p~--------~~t~~~ll~~~~~~--- 309 (513)
.|.......- +.+++++|..+++++. +.. +.|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 4444333211 2345677777777632 221 3444 24555555433322
Q ss_pred -CCh----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHh-CCCCCcccch
Q 010292 310 -GNL----PRMEKIYELVKHHVDGKEFPLIRAMICAYSK-------CSVTD-------RIKKIEALMRL-IPEKEYRPWL 369 (513)
Q Consensus 310 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~ 369 (513)
++. ..+..+|++.... .+.+...|..+...+.+ .|+++ .|..+++...+ ..+.....|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 3677889888876 34577888888888775 68876 55665554443 3333343442
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH-H
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV-M 447 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~ 447 (513)
.++..+...|++++|..+|+++++.. |.+ ..+|...+..+.+.|++++|.++|++..+.... +...|..... .
T Consensus 326 --~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 --AYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred --HHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 57888889999999999999999853 333 347888888899999999999999999865321 2233322222 2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
+...|++++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 346899999999999988764 4468899999999999999999999999998874
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=6.9e-15 Score=134.94 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=137.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHhcC
Q 010292 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g 345 (513)
+..+|...|++++|...++.. -.|+..++..+...+...++.++|.+.++++...+. +.+...+..+...|...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 334444444444444433221 123344444444444444444444444444443332 223333333444444444
Q ss_pred ChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHH
Q 010292 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425 (513)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 425 (513)
++++|.+.++ + +.+... ...++..|.+.|++++|.+.|+++.+............+.+..+...|++++|..+
T Consensus 116 ~~~~Al~~l~---~--~~~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 116 NPDAALRTLH---Q--GDSLEC--MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp CHHHHHHHHT---T--CCSHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CHHHHHHHHh---C--CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 4443333322 1 111111 22467778888888888888888887543221122223344445566999999999
Q ss_pred HHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHHC
Q 010292 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK-VNQVLGLMCKN 502 (513)
Q Consensus 426 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 502 (513)
|+++.+.. +.+...++.+..++.+.|++++|...|++..+.+ +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 189 ~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 189 FQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99998774 4578889999999999999999999999998876 5688899999999999999976 57888888754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=5.9e-14 Score=138.69 Aligned_cols=366 Identities=9% Similarity=0.008 Sum_probs=184.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc-----C---CCHhH
Q 010292 126 LMKQLGSRPRLALEVLNWRRRQ-----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-----L---KTIGT 192 (513)
Q Consensus 126 ~l~~~~~~~~~a~~~~~~~~~~-----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~---~~~~~ 192 (513)
.+....++.+.|++.|+...+. .....+-...+|+.+..+|...|++++|...+++..+.. . ....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3444456777777777766553 111122345567777777777777777777777665421 1 12455
Q ss_pred HHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010292 193 YNALLGAYMYN--GLSDKCQSLFRDLKKEANISPS-IVTYNTLISV---FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 193 ~~~li~~~~~~--g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|++.+++..+... .+..++..
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~ 214 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHH
Confidence 55555555543 3577777777777653 343 3344433333 3445666777777777665432 24555555
Q ss_pred HHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292 267 LIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 267 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
+...+.. .|++++|.+++++..... ..+...+..+...+...|++++|.+.+++..+.. +.+..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 5444443 345667777777766532 2246667777777777777777777777776652 334555665555554
Q ss_pred hcCC-------------------hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010292 343 KCSV-------------------TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403 (513)
Q Consensus 343 ~~g~-------------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 403 (513)
..+. .+.+...++...+..+.....+. .+...|...|++++|++.|++.+.....+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS--ILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH--HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh--hHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 3211 12222222222333333333331 35566666666666666666665533222111
Q ss_pred -HHHHHHHH-HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 404 -RIMRCIVS-SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481 (513)
Q Consensus 404 -~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (513)
.++..+.. .....|+.++|+..+++..+.. |+.... .+..+.+.++++.....+ +.+..+|..+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~ 438 (472)
T 4g1t_A 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSKN-GADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHHC-C-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 11122211 1234566666666666655433 221111 111233344444444444 556789999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCC-CCCCCCC
Q 010292 482 AYATCGQRRKVNQVLGLMCKNGY-DVPVNAF 511 (513)
Q Consensus 482 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~ 511 (513)
.|...|++++|++.|++..+.|- .|+..++
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHCC----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999988753 3555443
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.1e-13 Score=124.52 Aligned_cols=225 Identities=9% Similarity=-0.025 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CCCC----HHHH
Q 010292 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VMPD----TNTY 299 (513)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~ 299 (513)
...|..+...+...|++++|...|++..+.. .+..+|..+..++...|++++|.+.+++..+.. ..++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3566777777777888888888887777765 567777777777888888888888777766522 1112 4667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHh
Q 010292 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 379 (513)
..+...+...|++++|.+.++...+.. |+.. .+. .
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~------------------------------------~ 117 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILT------------------------------------K 117 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHH------------------------------------H
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHH------------------------------------H
Confidence 777777777777777777777766642 2321 222 3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
.|++++|.+.++++.. ..+.+...+..+...+...|++++|...++++.+.... +...|..+...|.+.|++++|..
T Consensus 118 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444455555544444 22333444555555555555555555555555443321 34445555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.+++..+.+ +.+...|..+..+|.+.|++++|.+.+++..+
T Consensus 195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555443 23345555555555555555555555555443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=1.6e-13 Score=120.09 Aligned_cols=196 Identities=13% Similarity=0.003 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
|++...+..+...+.+.|++++|...|++..+..+.+...|..+...+.+.|++++|+..|++..+. -+-+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4577788888888999999999999999998887778889999999999999999999999998875 24456788888
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010292 233 ISVFGRL-----------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301 (513)
Q Consensus 233 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 301 (513)
..++.+. |++++|+..|++..+... -+...|..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 888888888888887543 256778888888888888888888888887765 57788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010292 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 354 (513)
+..++...|++++|...|+...+.. +.+...+..+...+...|++++|...+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888888888888888887753 345666777777777777766655443
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=1.3e-11 Score=129.48 Aligned_cols=323 Identities=11% Similarity=0.067 Sum_probs=194.9
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010292 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
.|+.+.+..-.-...+.+.+|+++++.+.... ..+.-+...-+.++....+. +..+..+..+..... ...-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHHH
Confidence 44554444444445677777888887776332 11223445555566655555 445555555544321 12335
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
...+...|.+++|.++|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 6667777888888888877521 2223333433 5667788877777552 46677788888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 356 (513)
+++|.+.|.+. -|...|..++.+|.+.|++++|.+.+....+... +....+.++.+|.+.++++..+..
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH---
Confidence 88888888553 3667777788888888888888888877666542 222233477778887766643322
Q ss_pred HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010292 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 436 (513)
. ...+...+ . .+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++..
T Consensus 1190 I---~~~n~ad~-~-~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1190 I---NGPNNAHI-Q-QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred H---hCCCHHHH-H-HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence 1 12222222 2 3777777778888888887663 247777888888888888888777652
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 335555555555555555555554432 2223344555555566666666666555443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.7e-13 Score=121.91 Aligned_cols=225 Identities=13% Similarity=0.034 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYN 230 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~ 230 (513)
...+..+...+...|++++|.+.|++..+.. .+...|..+...+...|++++|++.|++..+.. ...++ ..+|.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3456667777777788888888888777766 677777777777888888888888877776531 01112 46677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
.+...+.+.|++++|...|++..+.. |+. ..+.+.|++++|.+.++++.... ..+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 77777777777777777777777642 342 33555667777777777776632 113556666777777777
Q ss_pred ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010292 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
++++|.+.++.+.+.. +.+..++..+... |...|++++|.+.|
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~------------------------------------~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAA------------------------------------LAKLMSFPEAIADC 196 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------------------------------------HHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHH------------------------------------HHHhCCHHHHHHHH
Confidence 7777777777766642 2234444444444 44445555555555
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 430 (513)
++.++.. |.+...+..+...+...|++++|.+.+++..
T Consensus 197 ~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 197 NKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5544422 2234445555555555555555555555544
No 38
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=2.5e-11 Score=127.48 Aligned_cols=349 Identities=11% Similarity=0.074 Sum_probs=240.3
Q ss_pred HHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010292 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169 (513)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 169 (513)
..++-..+...+++..+++.+. .......++. -.+.++.|.++.+.+ -+..+|..+..++.+.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie-~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIE-HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH-HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Confidence 3444555667777777777542 1122233333 234677777776633 1577888888889999
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010292 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (513)
|++++|.+.|.+. .+...|..++.+|.+.|++++|.+.|...++. .++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999998888653 37778888888999999999999998877653 244444445888888888887544332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
+ .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 256677777888888899999999999884 37888899999999999998888766 3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010292 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI 409 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 409 (513)
+..+|..+-.+|...|++..|..+..-+. ..+.....++..|.+.|.+++|+.+++..+... +....+|+-+
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftEL 1320 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTEL 1320 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHH
Confidence 55778888888888887777666532110 111112358889999999999999998877643 4456677666
Q ss_pred HHHHHhc--CcHHHHHHHHHHHHhcCCc------ccHhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCC
Q 010292 410 VSSYFRC--NAVDKLANFVKRAESAGWR------LCRSLYHSKMVMYASQRRVEEMESV-------------LKEMENYK 468 (513)
Q Consensus 410 i~~~~~~--~~~~~a~~~~~~m~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~~ 468 (513)
...|++. +++.++.++|..- .++. -+...|.-++-.|.+.|+++.|... |.+...
T Consensus 1321 aiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence 6666664 4555555555532 2222 2466789999999999999999832 222221
Q ss_pred CCCCHHHHHHHHHHHHhcC---------------CHhHHHHHHH
Q 010292 469 IDCSKKTFWIMYYAYATCG---------------QRRKVNQVLG 497 (513)
Q Consensus 469 ~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 497 (513)
-..|...|...+..|...+ +++.+.++|.
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 1356777777777777666 6666666665
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.5e-12 Score=112.91 Aligned_cols=200 Identities=14% Similarity=-0.026 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+...+..+...+...|++++|.+.|++..+..+.+...|..+...|...|++++|.+.|+++.+. .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 45667777777888888888888888877766557778888888888888888888888887764 2446677777888
Q ss_pred HHHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292 235 VFGRL-LLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 235 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
.+... |++++|...|+++.+.+..|+ ...|..+...+.+.|++++|.+.|+++.+.. ..+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888776322233 5667777777888888888888888776643 12467777777778888888
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
++|.++++.+.+.....+...+..+...+...|+.+.+...++.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888877766532134444555555555555555554444443
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.9e-12 Score=116.14 Aligned_cols=165 Identities=10% Similarity=-0.020 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+...|++++|.+.|+++.+....+...|..+...|...|++++|++.|+++.+. .+.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHH
Confidence 344455555555666666666666655544445555556666666666666666666665543 123445555555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
...|++++|...|+++.+.+..| +...|..+...+.+.|++++|.+.|++..+.. ..+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 56666666666665555422223 33445555555555556666665555554432 11345555555555555555555
Q ss_pred HHHHHHHHh
Q 010292 316 EKIYELVKH 324 (513)
Q Consensus 316 ~~~~~~~~~ 324 (513)
..+++.+.+
T Consensus 195 ~~~~~~~~~ 203 (252)
T 2ho1_A 195 RQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555555554
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.3e-11 Score=121.84 Aligned_cols=359 Identities=9% Similarity=-0.103 Sum_probs=229.2
Q ss_pred HHhhcCCChhHHHHHHhhhCCc-----cccccCc-hhHHHHHHHHH--cCChHHHHHHHHHHHHcCC----CCCCCCHHH
Q 010292 91 ELLANVDDLDKVFRVLDEKGSC-----LFRRHSN-GYAFVELMKQL--GSRPRLALEVLNWRRRQAG----YGTPMTKEE 158 (513)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~-~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~----~g~~~~~~~ 158 (513)
.+....++-.+++..+.+...- .....|+ ..+|..+-..+ .++.+.|...++...+... ........+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3334456677777777664211 0111232 33454443333 5789999999998876421 111224566
Q ss_pred HHHHHHHhcc--cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHH---HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 159 YTKGIKFAGR--INNVDLAADLFAEAANKHLKTIGTYNALLGAY---MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 159 ~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
+..+..++.+ .+++++|++.|++..+..+.+...+..+..++ ...++.++|++.|++..+. -+.+...+..+.
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHH
Confidence 7666555554 45799999999999988776777777666553 4567889999999998864 244566776666
Q ss_pred HHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHh
Q 010292 234 SVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAH 308 (513)
Q Consensus 234 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 308 (513)
..+.. .|++++|.+.+++...... .+..++..+...|.+.|++++|.+.|++..+. .| +..++..+...|..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 65554 4678899999999887654 47788999999999999999999999998874 34 46677777766643
Q ss_pred c-------------------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc-
Q 010292 309 S-------------------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW- 368 (513)
Q Consensus 309 ~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 368 (513)
. +..+.|...++...+.. +.+...+..+...|...|++++|.+.++....+........
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 23566777777776653 34556678889999999999999888776665544332211
Q ss_pred hHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHH
Q 010292 369 LNVLLIR-VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447 (513)
Q Consensus 369 ~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 447 (513)
.+..+.. .+...|+.++|+..|.+.++-.. .... ..+..+.+.++++...+.. +.+..+|..+...
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~----------~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSRE----------KEKMKDKLQKIAKMRLSKN-GADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHH----------HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHH----------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1111222 33467899999999999887433 2221 1122334455666555444 3367789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 010292 448 YASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~ 468 (513)
|...|++++|++.|++..+.|
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC-------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999988765
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.5e-12 Score=116.75 Aligned_cols=236 Identities=9% Similarity=-0.025 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--IVTYNTLI 233 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li 233 (513)
...+......+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|++.|++.... +-.++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHH
Confidence 3455667778889999999999999999877667888999999999999999999999999863 22222 34588899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
..+...|++++|+..|++..+... .+..+|..+...|...|++++|.+.|++..+.. .-+...|..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 366789999999999999999999999988752 224667777763555566999
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCccc------chHHHHHHHHHhcCCHH
Q 010292 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV---TDRIKKIEALMRLIPEKEYRP------WLNVLLIRVYAKEDCLE 384 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~ 384 (513)
+|.+.|+.+.+.. +.+...+..+...+...|+ .+.|...++...++......+ ..+..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999988863 3345666666666666665 444444433332221111100 11223444455555555
Q ss_pred HHHHHHHHHHh
Q 010292 385 EMEKSINDAFE 395 (513)
Q Consensus 385 ~a~~~~~~~~~ 395 (513)
+|.+.|++.++
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=3.6e-13 Score=117.93 Aligned_cols=210 Identities=12% Similarity=-0.029 Sum_probs=152.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
++...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 566778888888999999999999999988743 2257888888889999999999999999888763 33555666665
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
.+|.+.+ .. ... .+...|++++|+..|++.++. .|.+...+..+...+...|+
T Consensus 81 ~~~~~~~------------~~-~~~------------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 81 EAYVALY------------RQ-AED------------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHH------------HT-CSS------------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhh------------hh-hhh------------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC
Confidence 5555431 00 000 112348899999999998884 35566778888999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010292 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
+++|...+++..+.. .+...+..+...|...|++++|+..|++..+.+ +-+...+..+...+...|++++|.+.+++
T Consensus 134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998877 578888889999999999999999999998865 55778888999999999999999999887
Q ss_pred HH
Q 010292 499 MC 500 (513)
Q Consensus 499 m~ 500 (513)
..
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=5.8e-12 Score=119.47 Aligned_cols=185 Identities=8% Similarity=-0.051 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
..+|..+..++.+.|++++|++.|++..+..+.+...|+.+..++...|+ +++|+..|++..+. -+-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 34566667777788889999999998888777788888888888888886 99999999888875 2346678888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCChH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-SGNLP 313 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~ 313 (513)
++...|++++|+..|+++++... -+..+|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 88888999999999988887654 37788888888888888888999888888874422 57788888888888 55557
Q ss_pred HH-----HHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010292 314 RM-----EKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 314 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
+| ++.++..++.. +.+...|+.+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccC
Confidence 76 46777766652 335666666666666655
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=4.3e-12 Score=113.79 Aligned_cols=201 Identities=6% Similarity=-0.046 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (513)
...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667777777778888888888888776643 2256677777777778888888888877776652 2234444444444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010292 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420 (513)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 420 (513)
|.. .|++++|.+.++++...+..+.+...+..+...+...|+++
T Consensus 115 ~~~------------------------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 115 LYE------------------------------------QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HHH------------------------------------TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHH------------------------------------HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 444 45555555555544442222333444555555555555555
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 421 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|.+.++++.+... .+...+..+...|...|++++|..+++++.+.. +.+...+..+...+...|++++|.++++++.
T Consensus 159 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 159 QAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555544332 134445555555555555555555555555433 3344455555555555555555555555554
Q ss_pred H
Q 010292 501 K 501 (513)
Q Consensus 501 ~ 501 (513)
+
T Consensus 237 ~ 237 (252)
T 2ho1_A 237 R 237 (252)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=2.7e-12 Score=116.53 Aligned_cols=246 Identities=11% Similarity=-0.004 Sum_probs=125.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 010292 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP--NVFTYNYLIAG 270 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~ 270 (513)
+......+...|++++|+..|++..+. .+-+...+..+..++...|++++|+..|++..+.+..+ ...+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 334444555555555555555555542 11223345555555555555555555555555422111 12234445555
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010292 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 350 (513)
+...|++++|.+.|++..+.. .-+..++..+...+...|++++|.+.+++..+. .+.+...+..
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~-------------- 147 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYE-------------- 147 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHH--------------
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHH--------------
Confidence 555555555555555544421 112344444444455555555555544444433 1112222222
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc---HHHHHHHHH
Q 010292 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA---VDKLANFVK 427 (513)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~ 427 (513)
+...+...+++++|.+.|++.++.. |.+...+..+...+...|+ +++|...++
T Consensus 148 ----------------------l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 148 ----------------------LGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp ----------------------HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 2212223347777777777776643 3334455566666666676 666777777
Q ss_pred HHHhcC-Cccc------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 428 RAESAG-WRLC------RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481 (513)
Q Consensus 428 ~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (513)
++.+.. -.|+ ...|..+...|...|++++|.+.|++..+.+ +-+...+..+..
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 664331 1122 2456677777888888888888888887765 334444444433
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=1.3e-12 Score=118.72 Aligned_cols=249 Identities=10% Similarity=-0.025 Sum_probs=148.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010292 201 MYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (513)
...|++++|++.|+++.+.....+ +..+|..+...+...|++++|...|++..+... .+..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 345677888888888775311111 345677777778888888888888888776543 35777777777888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 358 (513)
+|.+.|++..+.. ..+..++..+...+...|++++|.+.++.+.+.. |+.......+.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~------------------- 152 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLY------------------- 152 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH-------------------
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHH-------------------
Confidence 8888887777632 1246677777777777788888877777776642 22221111222
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--
Q 010292 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-- 436 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-- 436 (513)
.+...|++++|...+.+........ ...+ .++..+...++.++|.+.++...+.....
T Consensus 153 -----------------~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 153 -----------------LAEQKLDEKQAKEVLKQHFEKSDKE--QWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp -----------------HHHHHHCHHHHHHHHHHHHHHSCCC--STHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred -----------------HHHHhcCHHHHHHHHHHHHhcCCcc--hHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 2233356666666665555432221 1122 24555555666666666666554322111
Q ss_pred -cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010292 437 -CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496 (513)
Q Consensus 437 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (513)
+...+..+...|.+.|++++|...|++....+ |+. +.....++...|++++|++.+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 14556667777777777777777777777654 321 223345566667777776655
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.4e-12 Score=114.67 Aligned_cols=200 Identities=10% Similarity=-0.014 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
....|..+...+.+.|++++|.+.|++..+..+.+...|..+...+...|++++|++.|+++.+. .+.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 45566667777778888888888888887766557778888888888888888888888887764 2346677777888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
.+...|++++|...|+++.+... .+...+..+...+.+.|++++|.+.++++.+.. ..+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888776543 366777777788888888888888888776642 2256677777777888888888
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
|.+.++.+.+.. +.+..++..+..+|.+.|++++|.+.++...+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 888887776652 23445555555555555555555554444433
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=6.1e-13 Score=120.95 Aligned_cols=244 Identities=9% Similarity=-0.065 Sum_probs=115.1
Q ss_pred ccCCHHHHHHHHHHHHhccC---C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292 168 RINNVDLAADLFAEAANKHL---K-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
..|++++|++.|+++.+... + +..+|..+...+...|++++|++.|+++.+. .+.+..+|..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 34555555555555554321 1 3445555555555555555555555555543 1223455555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
+|...|++..+... .+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555555554322 13445555555555555555555555555442 2333333333333444455555555555444
Q ss_pred hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR-----PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
... +++...+. ++..+...++.+.+... +.+....... +..+..+...|...|++++|...|++.+...
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMER---LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHH---HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHH---HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 432 12222222 33344444443332222 2222221110 1112246777777788888888887777643
Q ss_pred CCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010292 399 SVTTVRIMRCIVSSYFRCNAVDKLANFV 426 (513)
Q Consensus 399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~ 426 (513)
|.+...+ ..++...|++++|++-+
T Consensus 246 -p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTTCHHH---HHHHHHHHHHHHC----
T ss_pred -chhHHHH---HHHHHHHHHHHhhHHHH
Confidence 3222223 22455667777776654
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=8.6e-12 Score=109.45 Aligned_cols=202 Identities=6% Similarity=-0.091 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
+...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45667777788888888888888888877643 2346777778888888888888888888777652 234445555555
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010292 340 AYSKC-SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 340 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
.|... |++++|...++...+..........+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 55555 55554444443333310000001111124444444444444444444444422 2223334444444444444
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 419 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+++|.++++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44444444444332211123333334444444444444444444443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=7.1e-11 Score=107.26 Aligned_cols=228 Identities=12% Similarity=-0.009 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
+..++..+...+.+.|++++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+. + +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence 5666777777778888888888888877762 256677777788888 88888888888887764 3 677777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292 231 TLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 231 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .|++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77778877 888888888888877764 66777777777777 788888888888877755 56666777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010292 303 LRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA 378 (513)
Q Consensus 303 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 378 (513)
...+.. .+++++|.+.|+...+.+ +...+..+...|.. +..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~--------------------------------g~~ 197 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH--------------------------------GEG 197 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--------------------------------TCS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc--------------------------------CCC
Confidence 777776 777888888777766643 22333333333333 000
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcC
Q 010292 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAG 433 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 433 (513)
..+++++|.+.|++..+.+. ...+..+...|.. .+++++|.+.+++..+.+
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 05566666666665555422 2234455555665 666666666666666555
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=6.7e-12 Score=119.07 Aligned_cols=236 Identities=8% Similarity=-0.055 Sum_probs=170.8
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+...|+.+...+.+.|++++|++.|++..+. -+-+...|+.+..++...|+ +++|+..|++..+.... +...|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 6788999999999999999999999999975 24457889999999999996 99999999999987653 78899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-cCC
Q 010292 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSV 346 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 346 (513)
..++.+.|++++|+..|+++.+..- -+...|..+..++...|++++|++.++++++.. +.+...|+.+..+|.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999988542 268899999999999999999999999999874 3467788888877777 454
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHH
Q 010292 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLAN 424 (513)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~ 424 (513)
.++|. .+.+++.|++.+. ..|.+...|+.+...+...| ++++|++
T Consensus 251 ~~eA~-------------------------------~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 251 NDRAV-------------------------------LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp CSHHH-------------------------------HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred chHHH-------------------------------HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 35442 1112233333333 22334444555555555555 4555555
Q ss_pred HHHHHHhcCCcccHhhHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 010292 425 FVKRAESAGWRLCRSLYHSKMVMYASQR---------RVEEMESVLKEM 464 (513)
Q Consensus 425 ~~~~m~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 464 (513)
.+.++ +.. ..+...+..+...|.+.| .+++|+++|+++
T Consensus 298 ~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 298 QLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55554 221 223444555555555542 235666666666
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.7e-12 Score=125.64 Aligned_cols=274 Identities=9% Similarity=-0.051 Sum_probs=169.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-C
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I----VTYNTLISVFGRLLLVDHMEAAFQEIKDS----NL-S 258 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 258 (513)
....+..+...+...|++++|+..|++..+. .|+ . ..|..+...+...|++++|+..|++..+. +- .
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 3555667778889999999999999999875 333 3 47888889999999999999999988753 11 1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHH
Q 010292 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGN-----------------LPRME 316 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~ 316 (513)
....++..+...|...|++++|.+.|++..+. +-.+ ...++..+...+...|+ +++|.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 23467788888899999999999999887652 1111 24577778888888888 66676
Q ss_pred HHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292 317 KIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 317 ~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
+.+++..+. +..+ ...++.. +...|...|++++|.+.++
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~------------------------------------la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGN------------------------------------LGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH------------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------------------------------------HHHHHHHcCChHHHHHHHH
Confidence 666654431 0000 1122333 4455555555555555555
Q ss_pred HHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010292 392 DAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 392 ~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
+.++.. .......++..+...|...|++++|.+.+++..+.... ....++..+...|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 544321 11111224555666666666666666666655432110 113445556666666777777776666
Q ss_pred HHHhCC-----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 463 EMENYK-----IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 463 ~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+..... ......+|..+...|.+.|++++|.+.+++..+
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 655421 011133555666667777777777776666543
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=3.2e-12 Score=119.55 Aligned_cols=277 Identities=10% Similarity=-0.050 Sum_probs=167.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHH
Q 010292 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLS-PNVFT 263 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~ 263 (513)
+......+...|++++|+..|+++.+. . +.+ ...|..+...+...|++++|...+++..+. +-. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh-C-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 334445555666666666666666543 1 112 244555566666666666666666554421 111 12345
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPRMEKI 318 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~ 318 (513)
+..+...+...|++++|.+.+++..+..- .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66666677777777777777766543100 012 3466677777777777 6666666
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 010292 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH-- 396 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 396 (513)
+++..+. +...++ .......+..+...+...|++++|.+.+++..+.
T Consensus 166 ~~~a~~~---------------~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSL---------------VTALGD----------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHH---------------HHHHTC----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHhcCC----------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6544321 000010 0000111224666677778888888777776542
Q ss_pred --CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----Ccc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 010292 397 --KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG----WRL-CRSLYHSKMVMYASQRRVEEMESVLKEMENYK- 468 (513)
Q Consensus 397 --~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 468 (513)
+.......++..+...+...|++++|.+.+++..+.. ..+ ...++..+...|...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1112223367778888889999999999888765321 111 14567778888999999999999998876531
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 469 ----IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 469 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
......++..+...|.+.|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1112447778889999999999999999988765
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=5.8e-12 Score=121.46 Aligned_cols=276 Identities=10% Similarity=-0.072 Sum_probs=158.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLSP- 259 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 259 (513)
....+......+...|++++|+..|++..+. + +.+ ...|..+...+...|++++|...|++..+. +-.|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 5566777888899999999999999999875 1 223 357888888999999999999999887542 2111
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHH
Q 010292 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPR 314 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~ 314 (513)
...+|..+...|...|++++|...+++..+..- .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677888888899999999999988765210 012 4577788888888888 777
Q ss_pred HHHHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----ccchHHHHHHHHHhcCCHHH
Q 010292 315 MEKIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY----RPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 315 a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 385 (513)
|.+.++...+. +..+ ...++..+...|...|++++|...++...+...... ....+..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777665432 1111 123445555555555555555444333322211111 11112234445555555555
Q ss_pred HHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCHHH
Q 010292 386 MEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRVEE 456 (513)
Q Consensus 386 a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~ 456 (513)
|...+++.+.. +.......++..+...|...|++++|.+.+++..+. +..+ ....+..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555554431 111111233444555555555555555555544322 1111 12334444455555555555
Q ss_pred HHHHHHHHHh
Q 010292 457 MESVLKEMEN 466 (513)
Q Consensus 457 A~~~~~~m~~ 466 (513)
|...+++..+
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=2.1e-12 Score=125.01 Aligned_cols=275 Identities=11% Similarity=-0.049 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-CCCHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----GTYNALLGAYMYNGLSDKCQSLFRDLKKEA---NI-SPSIVT 228 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~-~p~~~~ 228 (513)
..+..+...+...|++++|.+.|++..+.+..+. ..|..+...|...|++++|++.|++..+.. +. ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444566677888999999999999888765543 578888888999999999999988876421 11 123457
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHH
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIKDS----N-LSPNVFTYNYLIAGYMTAWM-----------------WGKVEEIYQM 286 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 286 (513)
+..+...+...|++++|...|++..+. + ......+|..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888899999999999988887653 1 11134577888888999999 8999888887
Q ss_pred HHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-Cc----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 010292 287 MKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KE----FPLIRAMICAYSKCSVTDRIKKIEAL 356 (513)
Q Consensus 287 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 356 (513)
..+. +-.+ ...++..+...+...|++++|.+.+++..+.... .+ ...+..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------------------- 268 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN-------------------- 268 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH--------------------
Confidence 6541 1111 2457788888999999999999999887653110 01 112333
Q ss_pred HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010292 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 432 (513)
+...|...|++++|.+.+++.+... .......++..+...|...|++++|.+.+++..+.
T Consensus 269 ----------------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 269 ----------------LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp ----------------HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555555555444321 11112345566666666777777777766665432
Q ss_pred ----CC-cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 433 ----GW-RLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 433 ----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+. ......+..+...|.+.|++++|...+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 112345666667777777777777777776653
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.4e-10 Score=105.27 Aligned_cols=228 Identities=11% Similarity=-0.050 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010292 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
+..++..+...+...|++++|...|++..+. -+..++..+...|.. .|++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777888888888888888888888873 356677778888888 888888888888887765 677777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010292 301 LLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV 376 (513)
Q Consensus 301 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 376 (513)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-------------------------------- 123 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG-------------------------------- 123 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC--------------------------------
Confidence 88888888 888888888888777653 444444444444440
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh--
Q 010292 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS-- 450 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-- 450 (513)
....+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 000445555555555555432 12234444455554 556666666666555443 23444555555555
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010292 451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 503 (513)
.+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666665544 14455555566665 666666666666655544
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=7.2e-12 Score=120.78 Aligned_cols=302 Identities=11% Similarity=-0.062 Sum_probs=211.0
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCCC
Q 010292 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISPS 225 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p~ 225 (513)
......+......+.+.|++++|...|++..+.+..+ ..+|..+...|...|++++|...|++.... .+..|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455666777788888999999999999988876544 357888888899999999999998876532 111122
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHH
Q 010292 226 -IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGK 279 (513)
Q Consensus 226 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~ 279 (513)
..++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45677888888899999999998888764210 012 4477888888888999 888
Q ss_pred HHHHHHHHHc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC-CCc----HHHHHHHHHHHHhcCChhH
Q 010292 280 VEEIYQMMKA----GPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKE----FPLIRAMICAYSKCSVTDR 349 (513)
Q Consensus 280 a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~ 349 (513)
|.+.+++... .+-.+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 8888887644 12112 245778888888999999999999988765311 111 3367788888999999988
Q ss_pred HHHHHHHHHhCCCC----CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHH
Q 010292 350 IKKIEALMRLIPEK----EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDK 421 (513)
Q Consensus 350 a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~ 421 (513)
|...++....+... ......+..+...|...|++++|.+.+++.... +..+....++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 87776544433221 111222335788899999999999999887763 2222235567888899999999999
Q ss_pred HHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCH
Q 010292 422 LANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 422 a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~ 454 (513)
|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999986542 2221 234455566666665554
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=3.2e-12 Score=113.80 Aligned_cols=201 Identities=10% Similarity=-0.009 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010292 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
...|..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++|.+.|+++.+.. ..+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 34555556666666666666666666665432 245556666666666666666666666655432 1245555566666
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010292 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 385 (513)
+...|++++|.++++.+.+.. +.+...+. .+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~------------------------------------~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFY------------------------------------MLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHH------------------------------------HHHHHHHHTSCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHH------------------------------------HHHHHHHHhccHHH
Confidence 666666666666666555532 12222222 24444555555666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...|.+.|++++|...++++.
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666665555532 22344455566666666666666666666554432 234555666666666666666666666665
Q ss_pred hCC
Q 010292 466 NYK 468 (513)
Q Consensus 466 ~~~ 468 (513)
+.+
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 543
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=7.5e-12 Score=117.06 Aligned_cols=279 Identities=11% Similarity=-0.045 Sum_probs=194.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTY 229 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~ 229 (513)
.+......+...|++++|...|++..+....+ ...|..+...+...|++++|++.+++.... .+..| ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34455667788999999999999998876544 467888999999999999999999886542 11112 24577
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHHHHHHH
Q 010292 230 NTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGKVEEIY 284 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 284 (513)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999988764211 122 3478888889999999 89999888
Q ss_pred HHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010292 285 QMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 285 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
++.... +-.+ ...++..+...+...|++++|.+.++...+... +.++...
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~---------- 221 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK---------------EFGDKAA---------- 221 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------HHTCHHH----------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------------hcCChHH----------
Confidence 876531 1111 245677788888888999999888887654210 0000000
Q ss_pred CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---
Q 010292 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--- 432 (513)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 432 (513)
....+..+...+...|++++|.+.+++.... +.......++..+...+...|++++|...+++..+.
T Consensus 222 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 222 ------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 0001223566667777777777777766542 111122456777888888999999999988877543
Q ss_pred -CCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 433 -GWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 433 -~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+.. ....++..+...|.+.|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 12446777888899999999999999988764
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=2.4e-11 Score=116.39 Aligned_cols=235 Identities=6% Similarity=-0.105 Sum_probs=137.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC-CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CC-CHHHHHHH
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSN-LSP----NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MP-DTNTYLLL 302 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g-~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p-~~~t~~~l 302 (513)
..+...|++++|...|++..+.- -.+ ...+|..+...|...|++++|.+.+++..+. +- .+ ...++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34455556666666555554320 001 1234555555555555555555555554331 10 00 12344445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
...|...|++++|.+.++...+. .............+..+...|...|+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSM-------------------------------AEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH-------------------------------HHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 55555555555555555444331 11111111111112247777788888
Q ss_pred HHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcccHhhHHHHHHHHHhcCC-
Q 010292 383 LEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLCRSLYHSKMVMYASQRR- 453 (513)
Q Consensus 383 ~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~- 453 (513)
+++|.+.+++.++. +..+....++..+...|...|++++|.+.+++..+. +-......+..+...|...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 88888888877662 222445667888889999999999999998877543 222223335667777888888
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 454 --VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 454 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+++|+.++++.. ........+..+...|...|++++|.+.+++..+
T Consensus 320 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 320 EAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777662 1122345677888999999999999999998754
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.8e-12 Score=120.10 Aligned_cols=246 Identities=11% Similarity=-0.001 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CC
Q 010292 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PV 292 (513)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 292 (513)
..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|.+.|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777888888888888888877752 12224456777777777788888888877776542 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010292 293 MP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 293 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
.| ...++..+...+...|++++|.+.++++.+.... ... .........+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------~~~-----------------~~~~~~~~~~~ 157 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------VLG-----------------KDHPDVAKQLN 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------HHC-----------------TTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------hcC-----------------CCChHHHHHHH
Confidence 12 3556667777777777777777777766543100 000 00000011122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------CcccH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG-------WRLCR 438 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~ 438 (513)
.+...+...|++++|.+++++.... +..+....++..+...|...|++++|.++++++.+.. ..+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 3566666677777777777766553 2234445567777888888888888888888776421 11111
Q ss_pred -------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 439 -------SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 439 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
..+..+...+...+.+.+|...++...... +.+..+|..+..+|.+.|++++|.+++++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222333344555555666666665433 34567788899999999999999999998765
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=7.2e-11 Score=100.16 Aligned_cols=167 Identities=16% Similarity=0.019 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+..+|..+...|.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|++.+...... .+-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 67889999999999999999999999999988778999999999999999999999999999875 3456778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
.+...++++.|...+++..+... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999887643 367889999999999999999999999988743 2357889999999999999999
Q ss_pred HHHHHHHHHhc
Q 010292 315 MEKIYELVKHH 325 (513)
Q Consensus 315 a~~~~~~~~~~ 325 (513)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998874
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.37 E-value=1e-10 Score=114.26 Aligned_cols=274 Identities=12% Similarity=-0.004 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010292 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK---CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (513)
+.++|.+.|++..+.|.++ .+..|...|...+..++ +.+.+...... | +...+..|...|...+.++.+..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCHH
Confidence 4555666666555544322 45555555555443322 23333333322 1 23344445555555553333332
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHH
Q 010292 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAW---MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS----GNLPRMEKIYE 320 (513)
Q Consensus 248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~ 320 (513)
....+.+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|... +++++|.+.|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 2222211111112225555555555566 5566666666655554 22344334444444333 45666666666
Q ss_pred HHHhccCCCcHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC-----CHHHHHHHHHH
Q 010292 321 LVKHHVDGKEFPLIRAMICA-Y--SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED-----CLEEMEKSIND 392 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~ 392 (513)
... .| +...+..+-.. | ...++.++|.+.++...+. +...-.+ .+...|. .| ++++|.+.|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g~~~A~~-~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---DQPRAEL-LLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---TCHHHHH-HHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---CCHHHHH-HHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 555 22 33333444444 2 2344444443333332221 1111111 2333333 33 56666666655
Q ss_pred HHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010292 393 AFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEM 464 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 464 (513)
.. .+ +...+..|...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.++|...|+..
T Consensus 313 Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 313 AV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred Hh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 44 11 22233344444443 2256666666666555442 2233334444432 34566666666666
Q ss_pred HhCC
Q 010292 465 ENYK 468 (513)
Q Consensus 465 ~~~~ 468 (513)
.+.|
T Consensus 385 ~~~g 388 (452)
T 3e4b_A 385 KAQD 388 (452)
T ss_dssp HTTC
T ss_pred HHCC
Confidence 6555
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1.8e-09 Score=99.85 Aligned_cols=179 Identities=9% Similarity=-0.005 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010292 173 DLAADLFAEAANKHLKTIGTYNALLGAYMY-------NGLS-------DKCQSLFRDLKKEANISP-SIVTYNTLISVFG 237 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 237 (513)
++|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+ .+.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHHH
Confidence 678888888888766688888888877763 4776 888999988885 2345 4557888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-hcCChHH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPN-VF-TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPR 314 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~ 314 (513)
+.|++++|..+|++..+. .|+ .. +|..+...+.+.|++++|.++|++..+.+- .+...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 889999999999888874 343 33 788888888888888889888888887432 23444443333322 2688888
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
|.++|+...+.. +.+...|..++..+.+.|+.++|..+++..
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888877652 234555555555555555555444444333
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=6.8e-11 Score=116.36 Aligned_cols=207 Identities=10% Similarity=-0.043 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH-HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010292 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
.+.++..++..... .+.+...+..+...+...|++ ++|++.|++..+..+.+...|..+...|.+.|++++|++.
T Consensus 84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555666554432 344788899999999999999 9999999999988777899999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------c
Q 010292 213 FRDLKKEANISPSIVTYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA--------W 275 (513)
Q Consensus 213 ~~~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g 275 (513)
|++..+. .|+...+..+...+... |++++|+..|++..+... -+...|..+..+|... |
T Consensus 160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999863 68888999999999999 999999999999988654 3688899999999998 9
Q ss_pred CHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292 276 MWGKVEEIYQMMKAGPVMP----DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
++++|++.|++..+. .| +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.
T Consensus 236 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 236 ISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998874 34 78899999999999999999999999988863 345666777777777777555443
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.7e-11 Score=112.04 Aligned_cols=242 Identities=14% Similarity=0.055 Sum_probs=165.0
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA--- 220 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 220 (513)
.+.+..++..+...+...|++++|..+|+++.+. ..+ ...++..+...|...|++++|++.|++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4445677888889999999999999999988773 233 67788999999999999999999999887531
Q ss_pred --C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 221 --N-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS------NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 221 --g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+ ......++..+...+...|++++|...|++..+. +-.| ...++..+...+...|++++|.++|+++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1223567888999999999999999999988764 2222 3466888889999999999999999998763
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------CCCcH-------HHHHHHHHHHHhcCChhH
Q 010292 291 ------PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-------DGKEF-------PLIRAMICAYSKCSVTDR 349 (513)
Q Consensus 291 ------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~ 349 (513)
+-.| ...++..+...+...|++++|.+.++++.+.. ..+.. ..+..+...+...+.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 2123 35678888999999999999999999887531 11111 111122222222233332
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
+...++...... ......+..+...|...|++++|.+.|++.++
T Consensus 263 a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 263 YGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222222221111 11122233688999999999999999998776
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1.3e-09 Score=100.84 Aligned_cols=236 Identities=8% Similarity=0.022 Sum_probs=150.7
Q ss_pred CHhHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHH
Q 010292 189 TIGTYNALLGAYMYN----GLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------LLLV-------DHME 246 (513)
Q Consensus 189 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~ 246 (513)
+...|...+...-+. ++. ++|..+|++.... .+-+...|..++..+.. .|++ ++|.
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 355677777664443 232 6777888887764 24466677777776653 4665 7777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TN-TYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.+|++..+. .. -+...|..+...+.+.|++++|.++|++..+ +.|+ .. .|..+...+.+.|++++|.++|++..
T Consensus 85 ~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 85 NIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777777762 22 2455777777777777777777777777776 3343 22 67777777777777777777777776
Q ss_pred hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010292 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 403 (513)
+... .+...|...... .+...|++++|.++|++.++.. |.+.
T Consensus 162 ~~~p-~~~~~~~~~a~~-----------------------------------~~~~~~~~~~A~~~~~~al~~~--p~~~ 203 (308)
T 2ond_A 162 EDAR-TRHHVYVTAALM-----------------------------------EYYCSKDKSVAFKIFELGLKKY--GDIP 203 (308)
T ss_dssp TSTT-CCTHHHHHHHHH-----------------------------------HHHTSCCHHHHHHHHHHHHHHH--TTCH
T ss_pred hcCC-CCHHHHHHHHHH-----------------------------------HHHHcCCHHHHHHHHHHHHHhC--CCcH
Confidence 6422 222222111000 0112477777777777776632 3455
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-WRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
..|..++..+.+.|++++|..+|++..+.. ..| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777788888888888777652 343 3456777777777778888888887777654
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=6.9e-11 Score=115.53 Aligned_cols=340 Identities=9% Similarity=-0.023 Sum_probs=217.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH---HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV---DLAADLFAEAANKHLKTIGTYNALLGAYMYNG--- 204 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--- 204 (513)
.++.+.|.+.|+...+.+ +...+..|-..|...|+. ++|.+.|++..+. +...+..|...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT------CCTGGGTCC-------------------------------CHHHHHHHHHTC--CC
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCC
Confidence 468889999999887764 344566677777778888 8999999988865 6667777777565655
Q ss_pred --ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010292 205 --LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD---HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 205 --~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
+.++|++.|++.... |. ++ .+..|...|...+..+ .+.+.+......| +...+..|...|...+.+++
T Consensus 87 ~~~~~~A~~~~~~Aa~~-g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFAN-GE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHT-TC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 788999999999874 42 23 6677777777766544 3455555555544 34566677788888775555
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc----CChhHHHH
Q 010292 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC----SVTDRIKK 352 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~ 352 (513)
+......+.+.-...+...+..|...|...| +.++|.+.|+...+.|. ++...+..+...|... ++.++|.+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4444333322111123338888888999999 89999999999988864 4555556677777654 56665555
Q ss_pred HHHHHHhCCCCCcccchHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-----cHHHHHH
Q 010292 353 IEALMRLIPEKEYRPWLNVLLIRV-Y--AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-----AVDKLAN 424 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~ 424 (513)
.++.. . ++...-.+ .+... | ...+++++|.+.|++..+.+ +...+..|...|. .| ++++|.+
T Consensus 239 ~~~~a---a-~g~~~a~~-~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 239 LLEKI---A-PGYPASWV-SLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHH---G-GGSTHHHH-HHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHH---c-CCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 54443 3 33333223 35544 3 46899999999999998865 3444666777776 55 9999999
Q ss_pred HHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 010292 425 FVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVL 496 (513)
Q Consensus 425 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 496 (513)
.|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|..+|
T Consensus 309 ~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999877 44 45666667777765 4599999999999998884 3355666677764 56899999999
Q ss_pred HHHHHCCC
Q 010292 497 GLMCKNGY 504 (513)
Q Consensus 497 ~~m~~~g~ 504 (513)
+...+.|.
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 99988875
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=1.8e-10 Score=110.19 Aligned_cols=232 Identities=10% Similarity=0.021 Sum_probs=115.7
Q ss_pred HHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHHH
Q 010292 164 KFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNTL 232 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~l 232 (513)
..+...|++++|.+.|++..+.- .+ ...+|..+...|...|++++|++.+++......-.++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34455666666666666655421 11 2345666666666666666666666655432111111 2345555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHHH
Q 010292 233 ISVFGRLLLVDHMEAAFQEIKDSNLS-PN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLLL 302 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~l 302 (513)
...|...|++++|+..|++..+.... .+ ..+|+.+...|...|++++|.+.|++..+. +. .....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 66666666666666666555432100 11 134555556666666666666666555441 21 2224555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
...+.+.|++++|.+.+++..+.. .....+..... ...+...|...|+
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~-~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYS-------------------------------QKAGDVIYLSE-FEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHH-HHHHHHHHTSSCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHH-HHHHHHHHhCCCc
Confidence 666666666666666665544321 00001111111 1124444445555
Q ss_pred ---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010292 383 ---LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 383 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 430 (513)
+++|+.++++. +..+.....+..+...|...|++++|.+.+++..
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45555554443 2222233445566666677777777777766654
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=7.8e-11 Score=115.91 Aligned_cols=148 Identities=10% Similarity=-0.022 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS-DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (513)
++++.+.+++.......+...|..+...+...|++ ++|++.|++..+. -+-+...|..+..+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444333566666666666666666 6666666666653 12235566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------CChH
Q 010292 251 EIKDSNLSPNVFTYNYLIAGYMTA---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--------GNLP 313 (513)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~ 313 (513)
+..+.. |+...|..+...|... |++++|++.|++..+.. .-+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 665542 4455555566666655 66666666666555422 11345555555555555 5555
Q ss_pred HHHHHHHHHHh
Q 010292 314 RMEKIYELVKH 324 (513)
Q Consensus 314 ~a~~~~~~~~~ 324 (513)
+|.+.|++..+
T Consensus 239 ~A~~~~~~al~ 249 (474)
T 4abn_A 239 QALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=3.4e-10 Score=95.92 Aligned_cols=166 Identities=11% Similarity=0.034 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010292 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374 (513)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 374 (513)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..+|.+.|+++++...+.............+. .+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY--ILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH--HHH
Confidence 56677778888888888888888888777653 335566666666666666666655555544444333332221 244
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH
Q 010292 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 454 (513)
..+...++++.|.+.+.+..... |.+...+..+...|...|++++|++.+++..+... -+...|..+...|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCH
Confidence 44555555555555555555422 23344455555555555555555555555544332 1344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 010292 455 EEMESVLKEMEN 466 (513)
Q Consensus 455 ~~A~~~~~~m~~ 466 (513)
++|++.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=3.8e-10 Score=95.36 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...|..+...+...|++++|.+.|+++.+....+...|..+...+...|++++|.+.++++.+. .+.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 3456667777888888888888888887765557788888888888888888888888888764 24467778888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
+...|++++|...|+++.+... .+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888876543 367778888888888888888888888877643 23567788888888888888888
Q ss_pred HHHHHHHHhc
Q 010292 316 EKIYELVKHH 325 (513)
Q Consensus 316 ~~~~~~~~~~ 325 (513)
.+.++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877654
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=7.3e-10 Score=105.78 Aligned_cols=316 Identities=8% Similarity=-0.035 Sum_probs=169.0
Q ss_pred CCCCHHHHHHHHHHh--cccCCHHHHHHHHHHHHhcc--CC---CHhHHHHHHHH--HHHcCChHHHH---------HHH
Q 010292 152 TPMTKEEYTKGIKFA--GRINNVDLAADLFAEAANKH--LK---TIGTYNALLGA--YMYNGLSDKCQ---------SLF 213 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~--~~---~~~~~~~li~~--~~~~g~~~~A~---------~~~ 213 (513)
+.|+..+-+.|-.+| .+.+++++|.++++++.+.. .. +...|-.++.. ..-.+..+.+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 445666667777777 77788888888888775532 11 23333444332 11122333333 444
Q ss_pred HHHHHhCCCCCCH-H---HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccCHHHHHHHH
Q 010292 214 RDLKKEANISPSI-V---TYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 214 ~~m~~~~g~~p~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
+.+... ....+. . .|......+...|++++|+..|++..+.-. .++ ..++..+...|...|++++|.+.+
T Consensus 86 ~~i~~~-~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 86 ETIETP-QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcc-CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 444321 000010 0 112223334455666666666665553210 011 234555555555566666666655
Q ss_pred HHHHcC----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 285 QMMKAG----P-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358 (513)
Q Consensus 285 ~~m~~~----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 358 (513)
++..+. + ..+ ...+++.+...|...|++++|.+.+++..+. ..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-------------------------------~~ 213 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL-------------------------------AM 213 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------------------HH
Confidence 554431 1 011 1334455555555555555555555544331 11
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-
Q 010292 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW- 434 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~- 434 (513)
...........+..+...|...|++++|.+.|++.+.. ...+....++..+...|.+.|++++|...+++..+...
T Consensus 214 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 11111111111223667777778888888888776651 12233456677888888889999999988888765322
Q ss_pred ---cccHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 435 ---RLCRSLYHSKMVMYASQRR---VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 435 ---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
......+..+...|...++ +++|+.++++.. ........+..+...|...|++++|.+.|++..+
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1123345555556667777 777777777622 1122234566788889999999999988887754
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=4.1e-09 Score=100.32 Aligned_cols=303 Identities=9% Similarity=-0.027 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IV----TYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN---- 260 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 260 (513)
..+......+...|++++|...+++..... +++ .. .++.+...+...|++++|...+++..+... ..+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 344555566778999999999999988642 222 22 566777888899999999999998774211 112
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC----C
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVM--PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG----K 329 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~ 329 (513)
..+++.+...+...|++++|.+.+++.... +.. |. ...+..+...+...|++++|...+++..+.... .
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 234566778888999999999999987652 222 32 456677888889999999999999987764322 1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcc-cchHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ch
Q 010292 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEKEYR-PWLNV---LLIRVYAKEDCLEEMEKSINDAFEHKTSV--TT 402 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 402 (513)
....+..+...+...|++++|...++..... ...+.. .+... ..+..+...|++++|...+++........ ..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2456777788888889988888777665544 222222 22111 12234678899999999888876543221 11
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 403 VRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCR-SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
...+..+...+...|++++|...++.... .|..++. ..+..+...+...|+.++|...+++.....- . .
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~ 326 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----T 326 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----c
Confidence 22456677888888999999888887643 2322222 2556667778888999999998888876421 0 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
-.+..+...| +....+++.+....
T Consensus 327 g~~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 327 GFISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp CCCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred cHHHHHHHcc--HHHHHHHHHHHhCC
Confidence 1224444444 56667777766543
No 76
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=6.2e-08 Score=98.19 Aligned_cols=375 Identities=8% Similarity=0.041 Sum_probs=215.3
Q ss_pred chhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccC--CCHh
Q 010292 119 NGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHL--KTIG 191 (513)
Q Consensus 119 ~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~--~~~~ 191 (513)
|...|..++..+. +..+.+..+|+.+... .|.+...|...+..-.+.|+ ++.+.++|++.....+ +++.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 6667777777662 3566677777777654 56677777777777777777 8888888888777653 5677
Q ss_pred HHHHHHHHHHHcCCh--------HHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLS--------DKCQSLFRDLKKEANI-SPS-IVTYNTLISVFGR---------LLLVDHMEAAFQEI 252 (513)
Q Consensus 192 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m 252 (513)
.|..-+....+.++. +.+.++|+......|. .++ ...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 777777665554443 3344677776655566 453 4566666654332 23456677777776
Q ss_pred HHCCCCCCHHHHHH---HHHHH----------HHccCHHHHHHH------------------------------------
Q 010292 253 KDSNLSPNVFTYNY---LIAGY----------MTAWMWGKVEEI------------------------------------ 283 (513)
Q Consensus 253 ~~~g~~p~~~~~~~---li~~~----------~~~g~~~~a~~~------------------------------------ 283 (513)
+......-..+|.. +...+ -...+++.|...
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 64211111122211 11110 000112222223
Q ss_pred -------------------------------HHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhccCCCcH
Q 010292 284 -------------------------------YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME-KIYELVKHHVDGKEF 331 (513)
Q Consensus 284 -------------------------------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~ 331 (513)
|++.... +.-+...|...+.-+...|+.++|. ++|++.... .+.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 3332221 1112334444444455567777775 777777654 44566
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------CC----------cccchHHHHHHHHHhcCCHHHHHHHHH
Q 010292 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPE----------KE----------YRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
..|-..+...-+.|++++|.++++.+..... +. ..+..+...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666777777777877777777655543210 10 011112245555566677888888888
Q ss_pred HHHhc-CCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010292 392 DAFEH-KTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469 (513)
Q Consensus 392 ~~~~~-~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 469 (513)
+..+. +..... +|...+..-.+. ++.+.|..+|+...+. +.-+...+...++.....|+.+.|..+|+.......
T Consensus 459 ~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 459 KCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 77765 222222 232222222233 4478888888877654 223455566777777778888888888888776542
Q ss_pred CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 470 DC--SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 470 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+ ....|...+..-.+.|+.+.+.++.++|.+.
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 3456777777777888888888888888765
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=1.8e-08 Score=95.87 Aligned_cols=302 Identities=10% Similarity=-0.024 Sum_probs=204.9
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCC-CH----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHH
Q 010292 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TI----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTY 229 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~ 229 (513)
+......+...|++++|...+++....... +. .+++.+...+...|++++|.+.+++......-..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455667899999999999998775443 32 256777788999999999999999876531112233 346
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC----CCCHHH
Q 010292 230 NTLISVFGRLLLVDHMEAAFQEIKDS----NLS--P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV----MPDTNT 298 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t 298 (513)
+.+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++.....- .....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788899999999999999988752 221 2 245667788889999999999999999765321 112467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCCccc--chH
Q 010292 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIR----AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLN 370 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 370 (513)
+..+...+...|++++|...+++..+....++ ..... ..+..+...|+++.+...++............ ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 88888999999999999999998876422211 12111 23345778998887766654443322211111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292 371 VLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 446 (513)
..+...+...|++++|...+++..... ..+.. ..++..+..++...|+.++|...+++....... . -.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~--~----g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR--T----GFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--H----CCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--c----cHHH
Confidence 346788889999999999999876531 11112 235666778888999999999999988653211 1 1223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 010292 447 MYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
.+...| +....+++.+...+
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHcc--HHHHHHHHHHHhCC
Confidence 344444 56677777776654
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=3.9e-10 Score=115.62 Aligned_cols=167 Identities=10% Similarity=0.044 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
|-+..+|+.|..+|.+.|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|++.|++..+. -+-+...|+.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3357789999999999999999999999999987778999999999999999999999999999875 13357899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010292 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGN 311 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 311 (513)
..++.+.|++++|++.|++..+... -+...|+.+...|.+.|++++|++.|++..+. .|+ ...|..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc
Confidence 9999999999999999999998654 26789999999999999999999999999874 454 7899999999999999
Q ss_pred hHHHHHHHHHHHh
Q 010292 312 LPRMEKIYELVKH 324 (513)
Q Consensus 312 ~~~a~~~~~~~~~ 324 (513)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=2.4e-09 Score=102.18 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=143.6
Q ss_pred HHHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 010292 163 IKFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNT 231 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~ 231 (513)
...+...|++++|...|++..+.. .+ ...++..+...|...|++++|+..+++......-.++ ..+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 344567899999999998877542 12 3567888888899999999999988887653111122 356778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDS----NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL 301 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 301 (513)
+...|...|++++|...|++..+. +-.+ ...+++.+...|...|++++|.+.|++... .. .....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888888899999998888877642 1111 235677788888888888888888888765 32 223677788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 010292 302 LLRGYAHSGNLPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 377 (513)
+...+.+.|++++|.+.+++..+.. .+.....+..+...|...|+.+...+++..+.+..........+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 8888888888888888888876632 112223344444455555553334444444444222111111112244444
Q ss_pred HhcCCHHHHHHHHHHH
Q 010292 378 AKEDCLEEMEKSINDA 393 (513)
Q Consensus 378 ~~~~~~~~a~~~~~~~ 393 (513)
...|++++|.+.|++.
T Consensus 347 ~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4444444444444443
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=1e-09 Score=99.66 Aligned_cols=229 Identities=10% Similarity=0.001 Sum_probs=151.1
Q ss_pred HccCHHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCCC-cHHHHHHHH
Q 010292 273 TAWMWGKVEEIYQMMKA-------GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH------VDGK-EFPLIRAMI 338 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li 338 (513)
..|++++|+.+|++..+ ........++..+...+...|++++|...++++.+. +..| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45677777776666544 222234678889999999999999999999988764 2222 456788899
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHH
Q 010292 339 CAYSKCSVTDRIKKIEALMRLIP------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIM 406 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 406 (513)
..|...|++++|...++...... ........+..+...|...|++++|.+.+++.++. +..+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999998887766555442 11111222335788888999999999999988775 2345556678
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc-------CCcccH-hhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCC
Q 010292 407 RCIVSSYFRCNAVDKLANFVKRAESA-------GWRLCR-SLYHSKMVMYASQRR------VEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~-~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~ 472 (513)
..+...|...|++++|.++++++.+. ...+.. ..|..+...+...+. +..+...++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88899999999999999999987643 112222 223333333332222 2222222222211 11234
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 473 KKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
..++..+...|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999988753
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=3.5e-09 Score=89.33 Aligned_cols=164 Identities=10% Similarity=-0.025 Sum_probs=126.7
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|++.|+++.+. .+.+...+..+...+...|++++|...++++.+... .+...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 456777888888999999999999888753 345677888888899999999999999998887643 36778888888
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH
Q 010292 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 349 (513)
.+...|++++|.+.++++.+.. ..+...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8889999999999998887643 2367788888888888999999999988887763 3455666666667777776666
Q ss_pred HHHHHHHHH
Q 010292 350 IKKIEALMR 358 (513)
Q Consensus 350 a~~~~~~~~ 358 (513)
|...++...
T Consensus 163 A~~~~~~~~ 171 (186)
T 3as5_A 163 ALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554443
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=1.8e-09 Score=98.02 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=154.3
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CCCC-CHHHHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PVMP-DTNTYLLL 302 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~l 302 (513)
...|+++.|+..|++..+. .......++..+...|...|++++|.+.|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567787777777776641 22234678899999999999999999999998753 2222 36788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcc-------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC--CCcccch
Q 010292 303 LRGYAHSGNLPRMEKIYELVKHHV-------DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI----PE--KEYRPWL 369 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~ 369 (513)
...+...|++++|.+.+++..+.. .+.....+..+...|...|++++|...++..... .. .......
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987641 1234667888999999999999998887666554 11 1111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhcCCcc
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEH-------KTSVTTVRIMRCIVSSYFRCNA------VDKLANFVKRAESAGWRL 436 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~~~~~ 436 (513)
+..+...|...|++++|.+.+++.++. ...+.....+..+...+...+. +..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 335888999999999999999998863 1122222233333333333222 2222222222111 1122
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 437 CRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
....+..+...|...|++++|..+|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455688889999999999999999998775
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=3.3e-09 Score=108.74 Aligned_cols=165 Identities=11% Similarity=-0.028 Sum_probs=145.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+..+|+.|...|.+.|++++|++.|++..+. -+-+..+|+.+..++.+.|++++|+..|++..+.... +...|+.+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7889999999999999999999999999975 1335789999999999999999999999999986532 678999999
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
.+|.+.|++++|++.|++..+. .| +...|..+..++.+.|++++|++.|++..+.. +.+...+..+..+|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999999998874 45 48899999999999999999999999998863 34678899999999999999
Q ss_pred hHHHHHHHHHHh
Q 010292 348 DRIKKIEALMRL 359 (513)
Q Consensus 348 ~~a~~~~~~~~~ 359 (513)
++|.+.++...+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887665544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=1.5e-08 Score=89.10 Aligned_cols=197 Identities=10% Similarity=-0.060 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNT 231 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~ 231 (513)
.|+..+......+.+.|++++|.+.|++..+... ++...+..+..++...|++++|++.|++..+. .| +...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence 3567777778888888888888888888888776 56677777888888888888888888888763 34 4567778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC---HHHHHH
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNV-------FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD---TNTYLL 301 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ 301 (513)
+..++...|++++|+..|++..+... .+. ..|..+...+...|++++|++.|++..+. .|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 88888888888888888888876532 234 45677777778888888888888888773 454 456666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010292 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (513)
+..++...| ..+++.+...+. .+...|..... ...+.+++|...++...++.+.+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCC
Confidence 666665444 333444444321 22333333222 22233455555555555544443
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=5.1e-07 Score=91.54 Aligned_cols=348 Identities=9% Similarity=0.037 Sum_probs=214.0
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCCCHHH
Q 010292 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL---SDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
.+.|..+|..++..+.+.+.++.+..+|+.+...-+.....|..-+..-.+.|+ ++.+.++|++........|++..
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 456999999999999999999999999999998765588899999999888898 99999999999863111489999
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------HccCHHHHHHHHHHHH
Q 010292 229 YNTLISVFGRLLLV--------DHMEAAFQEIKD-SNL-SP-NVFTYNYLIAGYM---------TAWMWGKVEEIYQMMK 288 (513)
Q Consensus 229 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~ 288 (513)
|..-+....+.++. +.+.++|+.... .|. .+ +...|...+.... ..++++.+.++|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877766654 334578877664 466 55 4578888876543 2345778889998887
Q ss_pred cCCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHH----------------------------------
Q 010292 289 AGPVMPDTNTYL---LLLRGYA----------HSGNLPRMEKIYEL---------------------------------- 321 (513)
Q Consensus 289 ~~g~~p~~~t~~---~ll~~~~----------~~g~~~~a~~~~~~---------------------------------- 321 (513)
......-..+|. .+...+. ...+++.|...+.+
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 522111122221 1111100 00112222222222
Q ss_pred ---------------------------------HHhccCCCcHHHHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCccc
Q 010292 322 ---------------------------------VKHHVDGKEFPLIRAMICAYSKCSVTDRIK-KIEALMRLIPEKEYRP 367 (513)
Q Consensus 322 ---------------------------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~ 367 (513)
.... ++.....|-..+..+...|+.+.|. ++++......+....-
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 2221 1122333333333344455555553 5544444333333322
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCc-----------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010292 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK---------TSVT-----------TVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
|. ..+...-..|++++|.++|++++... ..|+ ...+|...+....+.|+.+.|..+|.
T Consensus 381 wl--~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 381 AF--SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HH--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32 35556666778888888888777531 0121 23356666777777788888888888
Q ss_pred HHHhcCCcccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 428 RAESAGWRLCRSLYHSKMVMYASQ-RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 428 ~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
++.+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|...++.....|+.+.|..+|++.....
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 876651111223333332223333 4478888888877765 34456666677777778888888888888877654
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=8.5e-09 Score=81.71 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=75.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.|..+...+...|++++|.++|+++.+.+..+...|..+...+...|++++|...|+++... .+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 34555556666666666666666666554445556666666666666666666666666543 1334455555666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
..|++++|...++++.+... .+..++..+...+.+.|++++|.+.|+++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666655432 2445555555556666666666666655543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=3e-08 Score=90.76 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010292 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRL--L-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (513)
.+|.+++.+..+. +++....| .+ + +. + ++++|...|++. ...|...|++++|.+.
T Consensus 2 ~~a~~~~~~a~k~--~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 2 SDPVELLKRAEKK--GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CCHHHHHHHHHHH--SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHH
T ss_pred CcHHHHHHHHHHH--hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 3566777777664 33322222 12 1 22 2 477777777665 3356677888888888
Q ss_pred HHHHHcC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 284 YQMMKAG----PVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 284 ~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
|++.... |-.++ ..+|+.+..+|...|++++|+..+++..+
T Consensus 60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8776542 21222 46788888888888898888888887665
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=6.4e-08 Score=84.91 Aligned_cols=213 Identities=8% Similarity=-0.024 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHH
Q 010292 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLL 302 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l 302 (513)
.|...+......+...|++++|+..|++..+....++...+..+..++.+.|++++|++.|++..+.. | +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 46678888888888999999999999988876654677777778888889999999999999888743 4 46778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
...+...|++++|.+.++...+.. +.+...+..+...+. .+...+...|+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~-----------------------------~~g~~~~~~~~ 132 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYL-----------------------------KEGQKFQQAGN 132 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-----------------------------HHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH-----------------------------HHhHHHHHhcc
Confidence 888889999999999998888753 223333333222222 35556677788
Q ss_pred HHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHH
Q 010292 383 LEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (513)
+++|++.|++.++. .|. +...+..+...|...|+ .+++++...+. .+...|.... ....+.+++|...
T Consensus 133 ~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~ 202 (228)
T 4i17_A 133 IEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDY 202 (228)
T ss_dssp HHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHH
Confidence 88888888888773 455 45667677766655443 34444444332 1233343333 3345668889999
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 010292 461 LKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 461 ~~~m~~~~~~p~~~~~~~l 479 (513)
+++..+.+ +-+..+...+
T Consensus 203 ~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 203 LGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHC-TTCHHHHHHH
T ss_pred HHHHhhcC-CCCHHHHHHH
Confidence 98888764 3344444433
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=3.9e-08 Score=77.78 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
..|..+...+...|++++|+.+|+++.+. .+.+...+..+...+...|++++|...|+++.+.+. .+...+..+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence 35778888899999999999999998865 245677888888999999999999999999887643 367788888889
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+.+.|++++|.++++++.+.. ..+...+..+...+...|++++|.+.++.+.+.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999887743 235778888888999999999999999887764
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=5.9e-08 Score=87.15 Aligned_cols=171 Identities=13% Similarity=0.032 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTY 229 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~ 229 (513)
.+...+-.+...+.+.|++++|.+.|+++.+..+.+ ...+..+..+|.+.|++++|+..|++..+...-.|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 356677777778888899999999999988876545 678888888899999999999999998875211122 3567
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHH
Q 010292 230 NTLISVFGR--------LLLVDHMEAAFQEIKDSNLSPNVFTY-----------------NYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 230 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~ 284 (513)
..+..++.. .|++++|+..|++..+.... +...+ ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 777778877 88899999999988875322 22222 34566777888888888888
Q ss_pred HHHHcCCCC-C-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 010292 285 QMMKAGPVM-P-DTNTYLLLLRGYAHS----------GNLPRMEKIYELVKHH 325 (513)
Q Consensus 285 ~~m~~~g~~-p-~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 325 (513)
+++.+..-. + ....+..+..++... |++++|...++.+.+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 887763211 1 244666677777655 7778888888887765
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=5.2e-08 Score=89.18 Aligned_cols=162 Identities=9% Similarity=-0.049 Sum_probs=104.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHhc----cCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 010292 163 IKFAGRINNVDLAADLFAEAANK----HLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTL 232 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~l 232 (513)
...|...|++++|.+.|++..+. |.+ ...+|+.+...|.+.|++++|+..|++......-..+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888888776553 211 2567888888888888888888888776643100111 3467777
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH------HHHH
Q 010292 233 ISVFGRL-LLVDHMEAAFQEIKDSNLSP-N----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT------NTYL 300 (513)
Q Consensus 233 i~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~ 300 (513)
...|... |++++|+..|++..+..... + ..+|+.+...+.+.|++++|+..|++..+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7777775 88888877777766421100 1 345667777777777777777777777663322111 1456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 010292 301 LLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.+..++...|++++|...|++..+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666677777777777777777655
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=8.5e-08 Score=82.81 Aligned_cols=170 Identities=12% Similarity=0.005 Sum_probs=124.5
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHhCC
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA----------------LLGAYMYNGLSDKCQSLFRDLKKEAN 221 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~g 221 (513)
.+-.....+.+.|++++|...|++..+..+.+...|.. +..+|.+.|++++|+..|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 34444556678899999999999888876556667777 888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHHH
Q 010292 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNTY 299 (513)
Q Consensus 222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~ 299 (513)
-+-+...|..+..++...|++++|+..|++..+... -+..+|..+...|...|+ .+.+...++.... ..|....+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 244678889999999999999999999999988654 367788888888776654 3455666655543 22333344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHH
Q 010292 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 334 (513)
.....++...|++++|...|++..+. .|+....
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 44556667788999999999998875 4554433
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=1.8e-08 Score=84.53 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=123.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-F 236 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~ 236 (513)
.+..+...+.+.|++++|...|++..+..+.+...|..+...+...|++++|+..|++.... .|+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 45566677888999999999999988876668889999999999999999999999988754 3455443332212 2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 315 (513)
...+....|...|++..+... -+...+..+...+...|++++|...|+++.+..-.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 232344457888888887543 257888888899999999999999999988754322 356788888999999999999
Q ss_pred HHHHHHHHh
Q 010292 316 EKIYELVKH 324 (513)
Q Consensus 316 ~~~~~~~~~ 324 (513)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876554
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=3.7e-08 Score=101.29 Aligned_cols=189 Identities=12% Similarity=-0.038 Sum_probs=150.9
Q ss_pred cccCCHHHHHHHHHHHH--------hccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 167 GRINNVDLAADLFAEAA--------NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
...|++++|++.+++.. +..+.+...|..+...+...|++++|++.|++..+. -+-+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 78899999999999998 554557889999999999999999999999999875 24467889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010292 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
.|++++|+..|++..+.... +...|..+..++.+.|++++ ++.|++..+.. .-+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999876532 67888899999999999999 99999988743 12578899999999999999999999
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHhCC
Q 010292 319 YELVKHHVDGKEFPLIRAMICAYSKCSV-----TDRIKKIEALMRLIP 361 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~ 361 (513)
|++..+.. +.+...+..+..++...+. .+...++.+.+....
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99887753 2345667677777766554 345556666666554
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=2.6e-07 Score=83.28 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=24.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
.+..++...|++++|++++.+....+. .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444444444444433332 134444444444444444444444444443
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=8.6e-08 Score=87.40 Aligned_cols=177 Identities=10% Similarity=-0.076 Sum_probs=130.4
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.+++... .+.+...+..+...+.+.|++++|...|++..+..+.+...+..+...+.+.|++++|...|++...
T Consensus 104 ~l~~~l~~~----lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXV----LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHH----SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHH----cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 444444443 2445666777778888889999999999988887777888888888888899999999998888875
Q ss_pred hCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCH
Q 010292 219 EANISPSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDT 296 (513)
Q Consensus 219 ~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~ 296 (513)
. .|+........ ..+...++.+.|...|++..+... .+...+..+...+...|++++|...|+++.+..-. .+.
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 3 46654333322 335667778888888888877643 36778888888888888888888888888774311 125
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 297 NTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
..+..+...+...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 678888888888888888887776644
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=2.8e-07 Score=83.05 Aligned_cols=184 Identities=12% Similarity=-0.011 Sum_probs=138.1
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
|+..|++....+.++..++..+..++...|++++|++++.+.... |- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888887766556666678889999999999999999998653 22 1366788899999999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HHcc--CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 254 DSNLSP-----NVFTYNYLIAGY--MTAW--MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 254 ~~g~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
+. .| +..+...|..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 45 356666666663 3334 899999999999875 36644555666689999999999999998766
Q ss_pred cc---------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 010292 325 HV---------DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365 (513)
Q Consensus 325 ~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 365 (513)
.. -+.+..+...+|......|+ .+.+.++.+.+..+.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 41 14467777566666666675 56666666666655443
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=3.5e-06 Score=76.57 Aligned_cols=171 Identities=9% Similarity=-0.048 Sum_probs=111.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHHHhccCCCHhHHHHHHHHH----HHc---
Q 010292 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN--NVDLAADLFAEAANKHLKTIGTYNALLGAY----MYN--- 203 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----~~~--- 203 (513)
..+.|+..++.+... .|-+..+|+.--.++...| ++++++++++.+...++++..+|+.--..+ ...
T Consensus 48 ~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 445677777666654 2335666676666666667 888888888888877776777777665555 444
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-----
Q 010292 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD--HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM----- 276 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----- 276 (513)
+++++++++++.+.+. -+-|-.+|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.-...+.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 6777888888888764 2456677777766677777777 77777777777655 367777766666666554
Q ss_pred -HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292 277 -WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 277 -~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
++++++.++++...... |...|+.+-..+.+.|+
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 55566666655553322 45555555555555554
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=4e-06 Score=76.24 Aligned_cols=221 Identities=6% Similarity=-0.082 Sum_probs=157.7
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc--
Q 010292 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG--LSDKCQSLFRDLKKEANISPSIVTYNTLISVF----GRL-- 239 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~----~~~-- 239 (513)
+....++|+++++.+...++.+..+|+.--.++...| ++++++++++.+... -+-+..+|+.--..+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccc
Confidence 3344578999999999988878889999888888888 999999999999975 234455666554444 455
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----
Q 010292 240 -LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG--KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN----- 311 (513)
Q Consensus 240 -g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----- 311 (513)
+++++++.+++++.+... .|..+|+.-...+.+.|.++ ++++.++++.+.... |...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 789999999999998765 48899999998899999988 999999999986644 77788777777777666
Q ss_pred -hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cc-cchHHHHHHHHHhcCCHHHH
Q 010292 312 -LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE---YR-PWLNVLLIRVYAKEDCLEEM 386 (513)
Q Consensus 312 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a 386 (513)
++++++.++.++... +.|...|+-+-..+.+.|..... +.....+....+ .. +.....+...|.+.|+.++|
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQ--LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGG--GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHH--HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 788888888888763 45778888777777777753321 122222221111 11 11111355555566666666
Q ss_pred HHHHHHHHh
Q 010292 387 EKSINDAFE 395 (513)
Q Consensus 387 ~~~~~~~~~ 395 (513)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666544
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=4.1e-07 Score=81.59 Aligned_cols=189 Identities=10% Similarity=0.004 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC-HHH
Q 010292 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD-TNT 298 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~t 298 (513)
.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|...|++..+..- .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45667777888888999999999999999876432 3 56788888889999999999999999887421 122 456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010292 299 YLLLLRGYAH--------SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 299 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
+..+..++.. .|++++|...|+.+.+... .+......+..... +...+.. .+ +
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~----------~~~~~~~-------~~-~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRE----------LRAKLAR-------KQ-Y 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHH----------HHHHHHH-------HH-H
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHH----------HHHHHHH-------HH-H
Confidence 7777778888 8899999999998887532 22222222111110 0000000 01 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcC
Q 010292 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRC----------NAVDKLANFVKRAESAG 433 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~ 433 (513)
.+...|...|++++|+..|+++++..... .....+..+..+|... |++++|...++.+.+..
T Consensus 153 -~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 -EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 46777888888888888888887754322 2344566667777655 77777777777776543
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=2.4e-07 Score=81.12 Aligned_cols=192 Identities=10% Similarity=-0.015 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN 230 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~ 230 (513)
+...+-.+...+.+.|++++|...|+++.+..+.+ ...+..+..+|.+.|++++|++.|+++.+...-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566677788899999999999888765432 4577788888888999999999999888652111221 2344
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010292 231 TLISVFGR------------------LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292 (513)
Q Consensus 231 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 292 (513)
.+..++.+ .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 44444443 35566666666666654211 11111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 010292 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365 (513)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 365 (513)
......+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.+.|.+.++.+....+.+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 00112445567777777777777777776532111 23566677777777777777777776666555443
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=4.3e-08 Score=79.72 Aligned_cols=144 Identities=7% Similarity=-0.110 Sum_probs=96.5
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 241 (513)
|-..+...|++++|++.++......+.+...+..+...|.+.|++++|++.|++..+. -+-+..+|..+..++.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3445566778888888887776644335666777788888888888888888888764 23456777888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHcCCCCC-CHHHHHHHHHHHHhcC
Q 010292 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMP-DTNTYLLLLRGYAHSG 310 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~t~~~ll~~~~~~g 310 (513)
+++|+..|++..+... -+..+|..+...|.+.|++++|.+. +++..+ +.| +...|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 8888888888776543 2567777777777777777665544 466555 234 3555655555555554
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=4.7e-07 Score=83.41 Aligned_cols=205 Identities=8% Similarity=-0.013 Sum_probs=110.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010292 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (513)
.|++++|.+++++..+.. +.. + +...++++.|...|++. ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777666531 111 0 11146666666666554 335666777777777
Q ss_pred HHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 283 IYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 283 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
.|.+.... |-.. -..+|+.+...|...|++++|...|++..+. +...|+...+..+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~a~~---- 118 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVENGTPDTAAMA---- 118 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTTTCHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHcCCHHHHHHH----
Confidence 77665431 1111 1346777777888888888888888776542 1122222111111
Q ss_pred HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 010292 358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA- 432 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 432 (513)
+..+...|.. |++++|++.|++.+... .......+++.+...|...|++++|+..+++..+.
T Consensus 119 ------------~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 119 ------------LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp ------------HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1124444445 66666666665544311 11111345666666777777777777777765432
Q ss_pred ---CCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 433 ---GWRLC-RSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 433 ---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+..+. ...+..+...+...|++++|...|++..
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11111 1244455555666677777777777766
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.6e-07 Score=96.62 Aligned_cols=175 Identities=12% Similarity=-0.032 Sum_probs=144.2
Q ss_pred cCChHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh
Q 010292 131 GSRPRLALEVLNWRRRQ----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS 206 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 206 (513)
.++++.|++.++...+. .....+.+...+..+..++.+.|++++|.+.|++..+.++.+...|..+..+|...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 56889999999887610 00113457788999999999999999999999999998877999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
++|++.|++..+. -+-+...|..+..++.+.|++++ +..|++..+... -+...|..+..++.+.|++++|++.|++
T Consensus 484 ~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 484 DSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999875 23456889999999999999999 999999998654 3678899999999999999999999999
Q ss_pred HHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010292 287 MKAGPVMPD-TNTYLLLLRGYAHSGN 311 (513)
Q Consensus 287 m~~~g~~p~-~~t~~~ll~~~~~~g~ 311 (513)
..+ +.|+ ...+..+..++...++
T Consensus 560 al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 560 VPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp SCT--TSTTHHHHHHHHHHHTC----
T ss_pred hcc--cCcccHHHHHHHHHHHHccCC
Confidence 887 3465 5677777777766554
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=2.6e-07 Score=93.26 Aligned_cols=152 Identities=9% Similarity=-0.126 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010292 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (513)
|++++|.+.|++..+..+.+...|..+...+...|++++|++.|++..+. .+-+...|..+..++...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34445555555544443334445555555555555555555555555432 1223444455555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS---GNLPRMEKIYELVKHH 325 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 325 (513)
++..+... -+...|..+..+|.+.|++++|.+.|++..+.. .-+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 55444322 134445555555555555555555555544421 11244444555555555 5555555555554443
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=8e-07 Score=76.62 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=121.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHH----------------HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTK----------------GIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 194 (513)
.++++.|...|+...+.. |-+...|.. +..+|.+.|++++|...|++..+..+.+...|.
T Consensus 17 ~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 92 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE 92 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 467788888887776532 224455555 888999999999999999999998877999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010292 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL--VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (513)
.+...+...|++++|++.|++..+. -+-+..+|..+..++...|+ .+.+...++.... ..|....+.....++.
T Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 93 ACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence 9999999999999999999999975 24467788888888866554 4455666666542 2233334444566677
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
..|++++|...|++..+ +.|+......+.
T Consensus 169 ~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 169 FTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 78999999999999988 568865544433
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=1.6e-05 Score=78.07 Aligned_cols=361 Identities=9% Similarity=0.002 Sum_probs=223.4
Q ss_pred chhHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC-HHHHHHHHHHHHhc-c--CCCHhHH
Q 010292 119 NGYAFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN-VDLAADLFAEAANK-H--LKTIGTY 193 (513)
Q Consensus 119 ~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-~--~~~~~~~ 193 (513)
-..+|...+..+. +..+.+..+|+.... ..|+...|...+....+.+. .+....+|+..... | +.+...|
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4567888888885 788889999987654 34699999999988877764 46677888887764 3 2377888
Q ss_pred HHHHHHHH----HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHCC
Q 010292 194 NALLGAYM----YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------------LLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 194 ~~li~~~~----~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g 256 (513)
...+..+. ..|+.+.+.++|+..... ...--...|......-.. .+.+..|..+++++...-
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88887654 346788999999999852 111112233322221111 112333444454444210
Q ss_pred CCCCHHHHHHHHHHHHHcc--C-----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292 257 LSPNVFTYNYLIAGYMTAW--M-----WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 257 ~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
...+...|...+..--..+ - .+.+..+|+++.... .-+...|...+.-+.+.|+++.|..++++.... +.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~ 244 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD 244 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 0013445655554422211 1 345678899887743 345778888888889999999999999999987 44
Q ss_pred cHHHHHHHHHHHHhcCChhHH-HHHHHHHHhCC-------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010292 330 EFPLIRAMICAYSKCSVTDRI-KKIEALMRLIP-------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 401 (513)
+...+.. |......+.. ..+.+.+.... ........+...+..+.+.+..+.|..+|+.. .... .
T Consensus 245 ~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~ 317 (493)
T 2uy1_A 245 GMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--V 317 (493)
T ss_dssp SSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--C
T ss_pred cHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--C
Confidence 4443332 2222111111 11111110000 00000011223555556678899999999988 3222 2
Q ss_pred hHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 402 TVRIMRCIVSSYFR-CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 402 ~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
...+|......-.. .++.+.|..+|+...+.... +...+...++...+.|+.+.|..+|+... .....|...+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 34445432222222 33699999999988764322 34556677888888999999999999973 2567888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 010292 481 YAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~m~~ 501 (513)
..-...|+.+.+.++++++.+
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888889999999998888764
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=2.5e-06 Score=74.55 Aligned_cols=190 Identities=11% Similarity=-0.050 Sum_probs=123.4
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--FTYN 265 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~ 265 (513)
+...+..+...+.+.|++++|+..|+++.+...-.|. ...+..+..++.+.|++++|+..|+++.+....-.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3456667778889999999999999999875211121 357888899999999999999999999875432111 2444
Q ss_pred HHHHHHHH------------------ccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292 266 YLIAGYMT------------------AWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 266 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
.+..++.+ .|++++|...|+++.+.. |+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 44444443 466777777777777632 332 111111100 00001110
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010292 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
.....+...|.+.|+++.|...++.+.+..+.+. .+.....+..+|.+.|+.++|.+.++.+...+.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1123456778899999999888777666544432 222233689999999999999999998887543
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=6.8e-06 Score=75.00 Aligned_cols=199 Identities=7% Similarity=-0.098 Sum_probs=122.9
Q ss_pred ccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHhcccCCHHHHHHHHHHHHhccCCCH--
Q 010292 116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY---TKGIKFAGRINNVDLAADLFAEAANKHLKTI-- 190 (513)
Q Consensus 116 ~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-- 190 (513)
..|+..++..+...+.-.++. ++. .. ...+...+ ...+..+...|++++|.+++++..+....+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~---~~~----~~---~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~ 111 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIH---FYE----VL---IYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF 111 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHH---HHH----TT---TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHH---HhC----CC---CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH
Confidence 367888888888777766542 221 11 11123322 3336667788888888888888776433221
Q ss_pred ----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----C-CC
Q 010292 191 ----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKD----S-NL 257 (513)
Q Consensus 191 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~ 257 (513)
..+..+...+...|++++|++.|++......-.++ ..+|+.+..+|...|++++|+..|++..+ . +.
T Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 12334556666667888888888887763111222 23577788888888888888888877763 1 11
Q ss_pred CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 010292 258 SPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMPD-TNTYLLLLRGYAHSGN-LPRMEKIYELVKH 324 (513)
Q Consensus 258 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~ 324 (513)
.+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. ..+|..+..++.+.|+ +++|.+.+++...
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 111 23667777777788888888877776543 222222 5667777777777774 5777777766543
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=1e-06 Score=81.17 Aligned_cols=165 Identities=8% Similarity=-0.018 Sum_probs=107.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccC----C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCC-CHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHL----K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA---NISP-SIV 227 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~p-~~~ 227 (513)
.|......|...|++++|.+.|.+..+... + -..+|+.+...|.+.|++++|++.|++..... |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344455667777888888888877655321 1 14577778888888888888888888765421 1111 134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCCC-HH
Q 010292 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-----NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMPD-TN 297 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ 297 (513)
+++.+...|.. |++++|+..|++..+..... ...+++.+...|.+.|++++|++.|++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 66777777777 88888888887766421100 1356777777888888888888888776641 21111 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 298 TYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.+..+..++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55566666777788888888887776
No 111
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=2.5e-05 Score=71.80 Aligned_cols=167 Identities=9% Similarity=-0.085 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHHH
Q 010292 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL-L-LVDHMEAAFQ 250 (513)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~ 250 (513)
+|+++++.+...++.+..+|+.--..+...| .+++++++++.+... .+-+..+|+.-...+.+. + ++++++++++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4444444444444434444444444444444 244444444444432 122333444433333333 3 4444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-------hHHH
Q 010292 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWG--------KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-------LPRM 315 (513)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~a 315 (513)
++.+... .|..+|+.-...+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+. ++++
T Consensus 150 k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 150 GSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHH
Confidence 4444332 24444444444443333333 555555555553322 44455554444444443 4566
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010292 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
++.++..+.. .+.|...|+-+-..+.+.|
T Consensus 228 Le~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 228 LIYILKSIHL-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 6666665554 2345666655555555444
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=1.7e-06 Score=74.82 Aligned_cols=176 Identities=10% Similarity=-0.119 Sum_probs=137.3
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHH
Q 010292 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSL 212 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 212 (513)
|+..|+...+.+ +...+..+-..|...+++++|.+.|++..+.| +...+..|...|.. + +.++|++.
T Consensus 5 A~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 455565555543 77888888888888999999999999988764 66778888888877 6 89999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----ccCHHHHHHH
Q 010292 213 FRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMT----AWMWGKVEEI 283 (513)
Q Consensus 213 ~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~ 283 (513)
|++..+. -+...+..|...|.. .+++++|...|++..+.|.. .+...+..|-..|.. .+++++|.++
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998763 367788888888877 78999999999998876531 026788888888888 7789999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhccC
Q 010292 284 YQMMKAGPVMPDTNTYLLLLRGYAHS-G-----NLPRMEKIYELVKHHVD 327 (513)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~~ 327 (513)
|++..+. ..+...+..|-..|... | ++++|.+.|+...+.|.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998875 23455677777777653 3 88999999998888764
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=1.6e-06 Score=79.18 Aligned_cols=200 Identities=9% Similarity=-0.052 Sum_probs=114.2
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH------
Q 010292 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI------ 190 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------ 190 (513)
.|+..++..+...++-.++.-......-. +.....+...+..+...|++++|.+.+++..+......
T Consensus 43 ~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~ 115 (293)
T 2qfc_A 43 YPSMDILQGIAAKLQIPIIHFYEVLIYSD-------IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFL 115 (293)
T ss_dssp CCCHHHHHHHTTTSCCCTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCHHHHhccccccc-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHH
Confidence 46666655555555544443222221110 11233445566677777888888877776665433211
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-----
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPN----- 260 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~----- 260 (513)
..+..+...+...|++++|++.|++...... ..+. ..+|+.+...|...|++++|...|++..+. ...|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 2233445556666777788777777664210 1111 346777777777777777777777776521 00111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRM-EKIYELVK 323 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~ 323 (513)
..+|+.+...|.+.|++++|.+.+++..+. +... -..+|..+...+.+.|++++| ...++...
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 146677777777777777777777765431 1111 155667777777777777777 55565544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=6.6e-07 Score=90.24 Aligned_cols=153 Identities=8% Similarity=-0.094 Sum_probs=117.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++.+.|.+.++...+. .+-+...|..+...+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4566777777766543 234678889999999999999999999999998877688899999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHH
Q 010292 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WMWGKVEEIYQMMK 288 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 288 (513)
.|++..+. .+.+...|..+..++.+.|++++|.+.|++..+... -+...+..+...+... |++++|.+.+++..
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999875 244578899999999999999999999999887643 3678888899999999 99999999999987
Q ss_pred cCC
Q 010292 289 AGP 291 (513)
Q Consensus 289 ~~g 291 (513)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 743
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=6.7e-06 Score=75.01 Aligned_cols=128 Identities=7% Similarity=-0.037 Sum_probs=95.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----c-CCccc-HhhHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTT----VRIMRCIVSSYFRCNAVDKLANFVKRAES----A-GWRLC-RSLYH 442 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~ 442 (513)
+...+...|++++|+..|++.+.......+ ..+++.+...|...|++++|..+++++.+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 566667778999999999988873222222 34688899999999999999999998763 1 22222 34678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCC-HhHHHHHHHHHH
Q 010292 443 SKMVMYASQRRVEEMESVLKEMENY----KIDCS-KKTFWIMYYAYATCGQ-RRKVNQVLGLMC 500 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 500 (513)
.+...|.+.|++++|...+++..+. +..+. ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8888999999999999999877642 22222 6788899999999995 699999888764
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.68 E-value=7.2e-08 Score=78.35 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
.+...|.+.|++++|++.|++.++. .|.+...|..+...|...|++++|...|++..+.... +...|..+...|.+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4777788888888888888888774 3556667888888888888888888888888765532 466777788888888
Q ss_pred CCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 452 RRVEEMESV-LKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 452 g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
|++++|.+. +++..+.+ +-+...|......+...|+
T Consensus 113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888766654 46666654 4456677766666666664
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=1.5e-06 Score=71.48 Aligned_cols=127 Identities=7% Similarity=-0.108 Sum_probs=72.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|++.|++..+. .+.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 44455555666666666666666666655445666666666666666666666666666653 1334556666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI--AGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m 287 (513)
..|++++|...|++..+... .+...+..+. ..+.+.|++++|.+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666655432 1333332222 2244555666666555543
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=9.4e-07 Score=80.45 Aligned_cols=164 Identities=7% Similarity=-0.090 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 010292 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375 (513)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 375 (513)
...+..+...+...|++++|...|++..+.. +.+...+..+...|...|+++
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~--------------------------- 168 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSE--------------------------- 168 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHH---------------------------
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHH---------------------------
Confidence 4445555556666666666666666665542 223444444555555555444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010292 376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (513)
+|...+++...... ............+...++.+.|...+++..+... -+...+..+...|...|+++
T Consensus 169 ---------~A~~~l~~~~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 169 ---------DAEAVLXTIPLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp ---------HHHHHHTTSCGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHHhCchhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHH
Confidence 44444444333211 1111111112223334444445555554444332 13444455555555555555
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 456 EMESVLKEMENYKID-CSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
+|...|+++.+.+-. .+...+..++..|...|+.++|...+++.
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 555555555543311 11345555555555555555555555443
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.64 E-value=6.6e-07 Score=74.82 Aligned_cols=159 Identities=8% Similarity=-0.056 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
..+..+...+...|++++|+..|++..+. -+-+...+..+...+.+.|++++|+..|++..+.. |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 45566777888999999999999987754 24466788889999999999999999999887653 344433332212
Q ss_pred -HHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHhcCCh
Q 010292 271 -YMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 271 -~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 347 (513)
+.+.++..+|...|++..+. .| +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 22333445578888887763 34 47888888899999999999999999888865432 355677777888888877
Q ss_pred hHHHHHHH
Q 010292 348 DRIKKIEA 355 (513)
Q Consensus 348 ~~a~~~~~ 355 (513)
+++...++
T Consensus 161 ~~A~~~y~ 168 (176)
T 2r5s_A 161 NAIASKYR 168 (176)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 76665543
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=2.4e-06 Score=66.15 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...+..+...+.+.|++++|.++|+++.+....+..+|..+...+.+.|++++|+.+|+++.+. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 3455555566666666666666666666554445556666666666666666666666666543 13345555566666
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 010292 236 FGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~ 255 (513)
+...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=5.2e-07 Score=75.50 Aligned_cols=122 Identities=9% Similarity=0.077 Sum_probs=89.3
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 010292 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-FGRLLLV-- 242 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~-- 242 (513)
+...|++++|.+.++...+..+.+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 3556788888888888777766677888888888888888888888888887641 3456677777777 6677887
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010292 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
++|...|++..+... -+...|..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888877543 25677777778888888888888888887764
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=6.6e-06 Score=70.89 Aligned_cols=128 Identities=9% Similarity=-0.060 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010292 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (513)
+..+...+...|++++|++.|++.. .|+...|..+...+.+.|++++|+..|++..+... .+...|..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 4445555666666666666666542 34566666666666666666666666666665432 24566666666666
Q ss_pred HccCHHHHHHHHHHHHcCC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292 273 TAWMWGKVEEIYQMMKAGP--------------VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g--------------~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
..|++++|.+.|++..+.. ..| ....+..+..++...|++++|.+.|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6777777777766665532 111 13566777777777777777777777777653
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=7.2e-07 Score=76.30 Aligned_cols=158 Identities=11% Similarity=-0.023 Sum_probs=104.9
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHHHHHHHHHHhcCCh
Q 010292 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTYNTLISVFGRLLLV 242 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~ 242 (513)
...|++++|.++++.+.........++..+...+...|++++|.+.|++.... .|..+ ...+++.+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45688888888555554322125677888888888888888888888877652 11111 235677777888888888
Q ss_pred hHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCC-CCHHHHHHHHHHHHhcCC
Q 010292 243 DHMEAAFQEIKDS----NLSP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVM-PDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 243 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~-p~~~t~~~ll~~~~~~g~ 311 (513)
++|...+++..+. +-.+ ...++..+...+...|++++|.+.+++... .+-. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888876642 2111 234577777888888888888888887653 1211 113345677778888888
Q ss_pred hHHHHHHHHHHHh
Q 010292 312 LPRMEKIYELVKH 324 (513)
Q Consensus 312 ~~~a~~~~~~~~~ 324 (513)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=3e-06 Score=66.24 Aligned_cols=117 Identities=10% Similarity=-0.036 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+...|++++|.+.|++.....+.+...|..+...+...|++++|++.+++.... .+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 344445555555556666666665555544445555555555555555666666555555543 122344555555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
.+.|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 555555555555555554322 134444444444444443
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=3.7e-06 Score=65.70 Aligned_cols=96 Identities=9% Similarity=-0.063 Sum_probs=58.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+......|.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|++.|++..+. -+.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 34445555666666666666666666655556666666666666666666666666666643 1334556666666666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 010292 238 RLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~ 255 (513)
..|++++|+..|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666553
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=1.7e-05 Score=68.37 Aligned_cols=142 Identities=9% Similarity=-0.034 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 010292 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----LVDHMEAAF 249 (513)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 249 (513)
+|++.|++..+.| +...+..|...|...+++++|++.|++..+. | +...+..|...|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777766653 6777888888888888888888888888764 3 66777777777776 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAH----SGNLPRMEKIYE 320 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~ 320 (513)
++..+.| +...+..|-..|.. .+++++|+++|++..+.|.. -+...+..|-..|.. .+++++|.+.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887754 56677777777766 67888888888888776521 016677777777777 677888888887
Q ss_pred HHHhc
Q 010292 321 LVKHH 325 (513)
Q Consensus 321 ~~~~~ 325 (513)
+..+.
T Consensus 154 ~A~~~ 158 (212)
T 3rjv_A 154 GSSSL 158 (212)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77665
No 127
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.53 E-value=4.5e-05 Score=74.84 Aligned_cols=328 Identities=7% Similarity=-0.073 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISP-SIVTYNTLI 233 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p-~~~~~~~li 233 (513)
..+|...+..+-. |+++.+..+|++.... .|++..|..-+....+.+. .+....+|+......|..| +...|...+
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 3444555555443 8999999999998884 4688999999988877763 4678889998887656434 667888877
Q ss_pred HHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHcCCCCCCH
Q 010292 234 SVFG----RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-------------AWMWGKVEEIYQMMKAGPVMPDT 296 (513)
Q Consensus 234 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~g~~p~~ 296 (513)
..+. ..++++.+..+|++.+.....--...|......-.. .+.+..|..+++++...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 346788999999999974221112333333221111 12233445555554431000133
Q ss_pred HHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010292 297 NTYLLLLRGYAHSG--N-----LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369 (513)
Q Consensus 297 ~t~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (513)
..|...+.--...+ - .+.+..+|+++... .+.....|...+.-+.+.|+.+.|..+++..... +.+..-|.
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence 45555444432221 1 24567788888875 3456778888888888999999998887766666 44332221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEHK-----------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 438 (513)
.|....+.++. ++.+...- .......+|...+....+.++.+.|..+|+++ +.. ..+.
T Consensus 251 ------~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 251 ------YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp ------HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred ------HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 22222111221 22222110 00112345777777777788999999999998 321 1233
Q ss_pred hhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 439 SLYHSKMVMYAS-QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 439 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..|......-.. .++.+.|..+|+...+.- +-+...|...++...+.|+.+.|..+|++.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344322222222 336999999999988753 334556777888888999999999998875
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=2.2e-06 Score=67.41 Aligned_cols=99 Identities=10% Similarity=-0.045 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
.+...+..+...+.+.|++++|.+.|++..+....+...|..+...+...|++++|++.|++..+. .+.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 344555555555566666666666666655544445555555556666666666666666655543 123445555555
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 010292 234 SVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~ 254 (513)
.++.+.|++++|...|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555566666555555554
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=2.9e-06 Score=68.61 Aligned_cols=101 Identities=4% Similarity=0.013 Sum_probs=56.0
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010292 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
|.+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++....+ +-+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 334444555555555666666666666655544321 34555555555666666666666666655544 3344555556
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC
Q 010292 480 YYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
..+|.+.|++++|.+.|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666655543
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.50 E-value=1.1e-05 Score=69.38 Aligned_cols=129 Identities=12% Similarity=-0.024 Sum_probs=105.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+...|++++|.+.|++... ++...|..+...|...|++++|++.|++..+. .+.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 345566677888999999999988742 37788999999999999999999999998875 2456788889999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSP---------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
..|++++|...|++..+..... ....|..+..+|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988753221 12678888899999999999999999988743
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=4.3e-05 Score=69.63 Aligned_cols=160 Identities=5% Similarity=-0.132 Sum_probs=116.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL---SP 259 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p 259 (513)
....+...+..+...|++++|.+.+.+..+.. +.+. ..+..+...+...|++++|+..|++..+... .+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44566677888999999999999999888642 2222 2344466677888999999999999875321 12
Q ss_pred C--HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----C
Q 010292 260 N--VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMP--DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV----D 327 (513)
Q Consensus 260 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~ 327 (513)
. ..+|+.+...|...|++++|.+.|++..+ .+-.+ ...+|..+...|...|++++|.+.+++..+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 2 45889999999999999999999998763 11111 12688889999999999999999998876531 1
Q ss_pred CC-cHHHHHHHHHHHHhcCChhHH
Q 010292 328 GK-EFPLIRAMICAYSKCSVTDRI 350 (513)
Q Consensus 328 ~~-~~~~~~~li~~~~~~g~~~~a 350 (513)
.. -..+|..+...|.+.|+.++|
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHH
Confidence 11 145666677777777777666
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=6.5e-05 Score=69.05 Aligned_cols=173 Identities=10% Similarity=-0.055 Sum_probs=129.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc-C-ChHH
Q 010292 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN-NVDLAADLFAEAANKHLKTIGTYNALLGAYMYN-G-LSDK 208 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-g-~~~~ 208 (513)
...+.|+++++.+... .+-+..+|+.--.++...| .+++++++++.+...++++..+|+.-...+.+. + ++++
T Consensus 68 e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 68 EKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp CCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 3455678888777765 2446677777777777777 599999999999988888888998888777776 7 8899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC----
Q 010292 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD--------HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM---- 276 (513)
Q Consensus 209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---- 276 (513)
++++++.+.+. -+-|-..|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence 99999999863 3556777877666665555565 88999999988765 488899988888888776
Q ss_pred ---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292 277 ---WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 277 ---~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
++++++.++++..... -|...|+-+-..+.+.|+.
T Consensus 221 ~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 6788888888877432 2567777666666665543
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=8e-06 Score=67.03 Aligned_cols=130 Identities=8% Similarity=-0.037 Sum_probs=99.2
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...|++..+... .+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 556778888888999999999999998865 244678888888889999999999999988887543 36778888888
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 010292 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY--LLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
++.+.|++++|.+.|++..+..- .+...+ ..+...+...|++++|.+.++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999999999988876431 134444 333444667788888888776654
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=9.2e-06 Score=62.77 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=64.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|.+.|+++.+. .+.+..++..+...+.+.|++++|...|+++.+... .+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 456666777777777777777777777654 234556666677777777777777777777665432 35566666666
Q ss_pred HHHHccCHHHHHHHHHHHHc
Q 010292 270 GYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~ 289 (513)
.+.+.|++++|.+.|+++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66677777777777766655
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=2.4e-06 Score=72.98 Aligned_cols=95 Identities=4% Similarity=-0.197 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc--ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCH
Q 010292 405 IMRCIVSSYFRCNAVDKLANFVKRAESA----GWR--LCRSLYHSKMVMYASQRRVEEMESVLKEMENY----KID-CSK 473 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~ 473 (513)
++..+...+...|++++|.+.+++..+. +-. .....+..+...+...|++++|...+++.... +-. .-.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444455555555555555555544321 101 11223444445555555555555555544321 100 011
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 474 KTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.++..+...+...|++++|.+.+++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 22344555555555555555555544
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=2.7e-06 Score=75.56 Aligned_cols=189 Identities=6% Similarity=-0.073 Sum_probs=117.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHhcccCCHHHHHHHHHHHHhccCC------C-------
Q 010292 130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG-------IKFAGRINNVDLAADLFAEAANKHLK------T------- 189 (513)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~~~~------~------- 189 (513)
..+++..|.+.|..+.+.. |-....|.-+ ...+.+.++..+++..+..-.+..+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 3456777777777776652 3355666655 34455544455555444444331100 1
Q ss_pred --------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 010292 190 --------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN- 260 (513)
Q Consensus 190 --------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 260 (513)
...+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 223344566677788888888888777642 3554455556667778888888888887554421 111
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010292 261 -VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 261 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
...+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23566677778888888888888888775433243 3355666667778888888888888887753
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=4.8e-06 Score=65.07 Aligned_cols=93 Identities=8% Similarity=0.007 Sum_probs=53.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 452 (513)
....|.+.|++++|++.|++.++. .|.+..+|..+..+|...|++++|++.+++..+.... +...|..+..+|...|
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCC
Confidence 455556666666666666665553 2334455555666666666666666666665544322 3455555666666666
Q ss_pred CHHHHHHHHHHHHhCC
Q 010292 453 RVEEMESVLKEMENYK 468 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~ 468 (513)
++++|.+.|++..+.+
T Consensus 96 ~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 96 EWSKAQRAYEDALQVD 111 (126)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC
Confidence 6666666666665543
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=7e-06 Score=76.48 Aligned_cols=149 Identities=7% Similarity=-0.035 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------HHHHHHHH
Q 010292 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----------------IVTYNTLI 233 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------------~~~~~~li 233 (513)
+++++|.+.|+...+..+.+...|..+...|.+.|++++|+..|++.... .|+ ...|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHH
Confidence 33444444443333222224555566666666666666666666665543 222 35666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
.++.+.|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+.. .-+...+..+..++.+.|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665432 255666666666666666666666666665532 113555666666666666666
Q ss_pred HH-HHHHHHHH
Q 010292 314 RM-EKIYELVK 323 (513)
Q Consensus 314 ~a-~~~~~~~~ 323 (513)
++ .++++.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65 33444443
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=2.7e-06 Score=77.13 Aligned_cols=193 Identities=6% Similarity=-0.112 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
..+..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|.+.+++..+.. .-+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444445555555555555555555544321 144555555555555555555555555555422 11345555555556
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010292 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 386 (513)
...|++++|...|+...+.... +...+...+....+.. ....... ......+. .+.... .+..+ ..|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~-~~~i~~-~l~~l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRWNS-IEERRIHQ-ESELHS-YLTRL-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHHHH-HHHTCCCC-CCHHHH-HHHHH-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHHHH-HHHHHHhh-hHHHHH-HHHHH-HHHHHHHH
Confidence 6666666666666554442110 0000000111111110 1111111 11111111 111111 12222 25777777
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh
Q 010292 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES 431 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~ 431 (513)
.+.+++..+ ..|.+......+...+.+. +.+++|.++|..+.+
T Consensus 155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777766655 3344444444444444444 567778888876643
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=4.4e-07 Score=84.67 Aligned_cols=131 Identities=8% Similarity=-0.160 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
+...+..+...|.+.|++++|...|++..+....+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566666777777777777777777777665544 467777777777777777777777777764
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHH
Q 010292 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV-EEIYQMMK 288 (513)
Q Consensus 220 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 288 (513)
.+.+...|..+..++...|++++|+..|++..+... -+...+..+..++.+.|+.++| ..+|+.|.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566777777777777777777777777776543 2566677777777777777766 34555554
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=2.3e-06 Score=69.18 Aligned_cols=93 Identities=9% Similarity=-0.087 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|+..|++.+.. .|.+...|..+..+|...|++++|...+++..+.... +...+..+..+|...
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 3666777778888888888877764 3445666777777788888888888888877765432 456666777778888
Q ss_pred CCHHHHHHHHHHHHhC
Q 010292 452 RRVEEMESVLKEMENY 467 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~ 467 (513)
|++++|...|++..+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888777654
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=4.6e-06 Score=74.11 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYA 449 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~ 449 (513)
.+...+...|++++|.++|..+...+ |.+. ..-.+...+.+.+++++|+..|+...... .|. ...+..+-.++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 35677888899999999998776643 3334 45556668889999999999998554332 121 235677788899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 450 SQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999885443253 346677888899999999999999998765
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=1.3e-05 Score=62.41 Aligned_cols=120 Identities=5% Similarity=-0.130 Sum_probs=80.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...|..+...+...|++++|++.|++.... .+.+...+..+...+...|++++|...+++..+... .+...|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHH
Confidence 4556777777777788888888888877754 234566777777777777777777777777776432 2466667777
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
..+.+.|++++|.+.|++..+.. ..+...+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777766532 12455566666666555543
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.40 E-value=4.4e-06 Score=67.48 Aligned_cols=95 Identities=8% Similarity=-0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+.+.|++++|...|++.....+.+...|..+..+|...|++++|++.|++..+. -+-+...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHH
Confidence 34444444555555555555555555554445555555555555555555555555555543 1223345555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 010292 238 RLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~ 254 (513)
+.|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=2e-06 Score=69.48 Aligned_cols=97 Identities=8% Similarity=-0.089 Sum_probs=42.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...+..+...+...|++++|+..|++.... -+.+...|..+..++...|++++|+..|++...... -+...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 3334444444444455555555555544432 122344444444444444444444444444443321 1233344444
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 010292 269 AGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~ 288 (513)
.+|...|++++|.+.|++..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444433
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=1.9e-06 Score=71.97 Aligned_cols=120 Identities=7% Similarity=0.019 Sum_probs=60.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHH-HHhcCCH--H
Q 010292 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM-YASQRRV--E 455 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~ 455 (513)
..|++++|...+++.+... |.+...+..+...|...|++++|...+++..+.... +...+..+... +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 3455555555555555432 233444555555555666666666666555443311 33444444444 4455555 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+|...+++..+.+ +-+...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666665555543 234455555555566666666666666555544
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=2.1e-06 Score=77.80 Aligned_cols=94 Identities=6% Similarity=-0.145 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010292 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
+...+..+...+.+.|++++|...|++.... .| +...|..+..++.+.|++++|.+.++...+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4556666777777777777777777777663 23 56677777777777777777777777776642 23455555555
Q ss_pred HHHHhcCChhHHHHHHHH
Q 010292 339 CAYSKCSVTDRIKKIEAL 356 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~ 356 (513)
.+|...|++++|...++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 556666655555554443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=3.2e-05 Score=58.91 Aligned_cols=95 Identities=16% Similarity=0.030 Sum_probs=50.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+...|++++|.+.|+......+.+...|..+...+...|++++|...+++..+. .+.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 44445555555555555555555555544445555555555555555555555555555543 1223444555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 010292 238 RLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~ 254 (513)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
No 149
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=9.1e-06 Score=61.44 Aligned_cols=98 Identities=13% Similarity=-0.021 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLI 233 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li 233 (513)
...+..+...+.+.|++++|...|++..+....+...|..+...+...|++++|++.|++..+. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence 3445555666666666666666666666655445666666666666666666666666666643 122 355666666
Q ss_pred HHHHhc-CChhHHHHHHHHHHHC
Q 010292 234 SVFGRL-LLVDHMEAAFQEIKDS 255 (513)
Q Consensus 234 ~~~~~~-g~~~~A~~~~~~m~~~ 255 (513)
.++.+. |++++|.+.|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=1.3e-06 Score=74.63 Aligned_cols=151 Identities=5% Similarity=-0.085 Sum_probs=82.5
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------------HH
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------------IV 227 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------------~~ 227 (513)
.+......|+++++.+.|+.-..........+..+...+...|++++|++.|++......-.|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3444455567777776666444332235667777788888888888888888888763111111 15
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHH
Q 010292 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGY 306 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~ 306 (513)
.|..+..++.+.|++++|+..+++..+... .+...|..+..+|...|++++|.+.|++..+. .| +...+..+..++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence 566666666666666666666666665432 24556666666666666666666666666552 22 344455555454
Q ss_pred HhcCChHHH
Q 010292 307 AHSGNLPRM 315 (513)
Q Consensus 307 ~~~g~~~~a 315 (513)
...++.+++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444444433
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.32 E-value=1.7e-05 Score=62.07 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=56.8
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...|..+...+...|++++|++.|++..+. .+.+...+..+...+...|++++|...|++..+... .+...|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 4555666666666666666666666666542 123455566666666666666666666666655432 2445555555
Q ss_pred HHHHHccCHHHHHHHHHHHHc
Q 010292 269 AGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.++.+.|++++|.+.|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555566666666666655544
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.31 E-value=0.0011 Score=60.47 Aligned_cols=164 Identities=7% Similarity=-0.084 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 010292 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL--L 241 (513)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~ 241 (513)
+|+++++.+...++.+..+|+.--..+...+. +++++.+++.+... -+-+..+|+.-.-.+.+.| +
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCccc
Confidence 55555555555554444455443333322222 45555555555543 1334455555444444444 2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------
Q 010292 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS----------- 309 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 309 (513)
+++++.+++++.+... .|..+|+.-...+.+.|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence 5556666666655443 255555555555555555 35556665555554322 444454444443333
Q ss_pred ---CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010292 310 ---GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 310 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
+.++++++.++..... .+.|...|+-+-..+.
T Consensus 204 ~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLG 238 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 2355666666665554 2345555554333333
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.8e-05 Score=61.63 Aligned_cols=96 Identities=8% Similarity=-0.106 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+.+.|++++|.+.|++..+..+.+...|..+..+|.+.|++++|++.|++..+. -+-+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 345555556666666666666666666655556666666666666666666666666666653 123455666666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~ 254 (513)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666654
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=2e-05 Score=67.03 Aligned_cols=132 Identities=12% Similarity=-0.084 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----------------hHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----------------GTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 220 (513)
..+..+...+.+.|++++|.+.|++..+....+. ..|..+..+|.+.|++++|+..+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 3556677778889999999999998887544333 78888999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHcCC
Q 010292 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGP 291 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g 291 (513)
.+.+...|..+..++...|++++|...|++..+... -+...+..+..++...++.+++. ..|..|...|
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 245678899999999999999999999999887643 36777888888888877777766 5555555433
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.1e-05 Score=59.54 Aligned_cols=97 Identities=8% Similarity=0.046 Sum_probs=66.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+.+.|++++|++.|++..+. .+.+...|..+..++.+.|++++|+..|++..+... -+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 445666667777777777777777777754 234566777777777777777777777777776543 24666666777
Q ss_pred HHHHccCHHHHHHHHHHHHc
Q 010292 270 GYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~ 289 (513)
++...|++++|.+.|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777776655
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=6.3e-05 Score=59.31 Aligned_cols=99 Identities=12% Similarity=-0.069 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
.+...+..+...+.+.|++++|...|+......+.+...|..+..++...|++++|+..|++..+. .+.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 466777777777788888888888888777766657777788888888888888888888877764 234566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 010292 234 SVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~ 254 (513)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777788888888877777764
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=1.7e-05 Score=63.36 Aligned_cols=93 Identities=5% Similarity=-0.126 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|...|++.+... |.+...|..+..+|...|++++|...+++..+.... +...+..+..+|...
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 36667778888888888888887743 445667778888888888888888888888766532 456677778888888
Q ss_pred CCHHHHHHHHHHHHhC
Q 010292 452 RRVEEMESVLKEMENY 467 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~ 467 (513)
|++++|...|+...+.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888887764
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=1.4e-05 Score=62.38 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=53.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCC----HHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPS----IVTYNTL 232 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~----~~~~~~l 232 (513)
.+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|...|++...... ..++ ..+|..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4455555556666666666666666555444555666666666666666666666665554310 0111 4455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 010292 233 ISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..++.+.|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=1.5e-05 Score=60.12 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 010292 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC--SKKTFWIMYY 481 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~ 481 (513)
..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3455566666677777777777776665442 245556666777777777777777777777654 33 4667777777
Q ss_pred HHHhc-CCHhHHHHHHHHHHHCC
Q 010292 482 AYATC-GQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 482 ~~~~~-g~~~~A~~~~~~m~~~g 503 (513)
.+.+. |++++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777776553
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=2.3e-05 Score=61.20 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=52.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYNTL 232 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~~l 232 (513)
++..+...+.+.|++++|++.|++..+..+.+...|+.+..+|.+.|++++|++.|++..+.. ...++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344555556666666666666666665554456666666666666666666666666554320 00111 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 010292 233 ISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555443
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=2.3e-05 Score=62.59 Aligned_cols=94 Identities=11% Similarity=-0.122 Sum_probs=52.9
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
+..+...+.+.|++++|...|+.....++.+...|..+..+|.+.|++++|+..|++.... -+-+...|..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 3344445555666666666666665555445556666666666666666666666665543 12334455555555666
Q ss_pred cCChhHHHHHHHHHHH
Q 010292 239 LLLVDHMEAAFQEIKD 254 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~ 254 (513)
.|++++|...|++..+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655554
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=3.6e-05 Score=63.17 Aligned_cols=99 Identities=11% Similarity=-0.037 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+...+..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..|++..+. .+-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 44556666666777777777777777777665556677777777777777777777777777654 1334566677777
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 010292 235 VFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~ 255 (513)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777766653
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=3.1e-05 Score=63.60 Aligned_cols=94 Identities=5% Similarity=-0.095 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|++.|++.++.. |.+...|..+..+|...|++++|+..+++..+.... +...|..+..+|...
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 57788889999999999999998853 456777888999999999999999999998876533 577888899999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 010292 452 RRVEEMESVLKEMENYK 468 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~ 468 (513)
|++++|...|++..+..
T Consensus 93 g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999988754
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.00077 Score=64.94 Aligned_cols=188 Identities=9% Similarity=-0.108 Sum_probs=95.7
Q ss_pred HhcccCCHHHHHHHHHHHHhccCC--C---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010292 165 FAGRINNVDLAADLFAEAANKHLK--T---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~--~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
.+.+.|++++|.+.|..+.+.... + ..++..+...|...|++++|.+.+..+....+..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345556666666666666554321 1 11355566666666666666666666544211122221
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CC--CC
Q 010292 228 ----TYNTLISVFGRLLLVDHMEAAFQEIKD----SNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PV--MP 294 (513)
Q Consensus 228 ----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p 294 (513)
+.+.+-..+...|+.+.|..++++... .+..+. ..++..+...|...|++++|..++++.... +. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 122222333344666666666655542 222222 345556666666667777766666665431 11 11
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCC-C-c--HHHHHHHHHHHHhcCChhHHHH
Q 010292 295 -DTNTYLLLLRGYAHSGNLPRMEKIYELVKHH--VDG-K-E--FPLIRAMICAYSKCSVTDRIKK 352 (513)
Q Consensus 295 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~a~~ 352 (513)
...+|..++..|...|++++|..+++..... ... | . ...+..+...+...|+++.|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1445666666666667777766666654431 111 1 1 2234444445555566655543
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=4.8e-05 Score=59.36 Aligned_cols=105 Identities=8% Similarity=-0.056 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~ 263 (513)
...+..+...+.+.|++++|++.|++..+. .+-+...|+.+..+|.+.|++++|+..|++..+... .++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 456677777888888888888888887764 234566777778888888888888888877765321 111 235
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 298 (513)
|..+..++...|++++|++.|++... ..||..+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 56666666777777777777776655 2345433
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.17 E-value=0.00016 Score=54.89 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=68.2
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..+... .+...|..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 455666777777778888888888777754 233566777777777777777777777777766532 25666677777
Q ss_pred HHHHccCHHHHHHHHHHHHcC
Q 010292 270 GYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~ 290 (513)
++...|++++|.+.|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777776663
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=5.2e-05 Score=59.83 Aligned_cols=93 Identities=8% Similarity=-0.101 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|...|.+.+... |.+...+..+...+...|++++|...++...+.... +...+..+...|...
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence 46667777777777777777776643 334556777777777777777777777777665432 455666777777777
Q ss_pred CCHHHHHHHHHHHHhC
Q 010292 452 RRVEEMESVLKEMENY 467 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~ 467 (513)
|++++|...|++..+.
T Consensus 91 ~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 91 ESYDEAIANLQRAYSL 106 (137)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7777777777776653
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=8.4e-05 Score=59.37 Aligned_cols=100 Identities=9% Similarity=-0.067 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
.+...+..+...+.+.|++++|.+.|++..+....+ ...|..+...|...|++++|++.|++..+. .+.+...|.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 355666666667777777777777777766654433 566666667777777777777777776653 123455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666667777777777777666654
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=3e-05 Score=60.41 Aligned_cols=109 Identities=7% Similarity=-0.037 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~ 263 (513)
...|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..+... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456667777777788888888888877764 244566777777777777777777777777765321 112 556
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
|..+...+.+.|++++|.+.|++..+. .|+......+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 666666777777777777777776653 2444444333
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.00018 Score=69.38 Aligned_cols=197 Identities=11% Similarity=-0.002 Sum_probs=105.2
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcH
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMP-D---------------TNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEF 331 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 331 (513)
..+.+.|++++|++.|.++.+..-.. + ...+..+...|...|++++|.+.+..+.+. +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678899999999999987743221 1 124677888889999999998888876552 111222
Q ss_pred H----HHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 010292 332 P----LIRAMICAYSKCSVTDRIKKIEALMRL----IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTS 399 (513)
Q Consensus 332 ~----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~ 399 (513)
. +.+.+-..+...|+.+.+.+.++.... ..........+..+...|...|++++|..++++.... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 122222223334555555544433322 1111111122234566666666666666666654432 222
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+....++..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333445556666666666666666666654321 11111 2334444455555666666666655554
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=3.9e-05 Score=59.30 Aligned_cols=92 Identities=11% Similarity=-0.068 Sum_probs=54.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
.+...+.+.|++++|...|++..+..+.+...|..+..++...|++++|+..|++..+. -+-+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445556666666666666666655555666666666666666666666666666543 1224455555666666666
Q ss_pred ChhHHHHHHHHHHH
Q 010292 241 LVDHMEAAFQEIKD 254 (513)
Q Consensus 241 ~~~~A~~~~~~m~~ 254 (513)
++++|+..|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666554
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.0034 Score=57.32 Aligned_cols=185 Identities=10% Similarity=-0.040 Sum_probs=128.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHHHH
Q 010292 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAYMY 202 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 202 (513)
..+.|++.++.+... .|-+..+|+.--.++...+. +++++.+++.+...++++..+|+.-...+.+
T Consensus 45 ~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 45 LDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 445677777777653 23345555544333333332 6788899999988887888899888888888
Q ss_pred cCC--hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----
Q 010292 203 NGL--SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA----- 274 (513)
Q Consensus 203 ~g~--~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 274 (513)
.|+ +++++++++.+.+. -+-|-..|+.-.-.+...|. ++++++.++++.+..+ -|..+|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 121 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccc
Confidence 774 78999999999875 35677888887777778887 5889999999988765 4888888887777665
Q ss_pred ---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhc
Q 010292 275 ---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-----------GNLPRMEKIYELVKHH 325 (513)
Q Consensus 275 ---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~ 325 (513)
+.++++++.+++...... -|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 457788888888776431 2566666544444443 2345555556555553
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=4.1e-05 Score=62.16 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=48.5
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IV 227 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ 227 (513)
++..+...+...|++++|.+.+++..+.... ...++..+...+...|++++|.+.|++......-..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666665443111 1235555666666666666666666655432100011 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 228 TYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
.+..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444555555555555554443
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=5.3e-05 Score=61.47 Aligned_cols=135 Identities=11% Similarity=-0.063 Sum_probs=95.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS-PN---- 260 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 260 (513)
..++..+...+...|++++|++.+++..+...-.++. .++..+...+...|++++|...+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4577888888999999999999998876531111221 46777888888999999999988887642100 11
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
..++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777778888888888888888876542 2111 145667777778888888888888877654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.03 E-value=9.4e-05 Score=57.10 Aligned_cols=95 Identities=4% Similarity=-0.174 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
.+..+...+.+.|++++|+..|++..+. -+-+...|..+..++...|++++|+..|++..+.... +...|..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4556667788889999999999988875 2446778888888888999999999999888876432 667888888888
Q ss_pred HHccCHHHHHHHHHHHHc
Q 010292 272 MTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~ 289 (513)
.+.|++++|...|++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888999999998888876
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00018 Score=57.38 Aligned_cols=97 Identities=7% Similarity=-0.102 Sum_probs=68.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 264 (513)
+...+..+...+...|++++|++.|++..+. .|+ ...|..+..++...|++++|+..+++..+... .+...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence 5667777777778888888888888877743 455 46667777777777777777777777766432 255666
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 265 NYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
..+..++...|++++|.+.|++..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777777777777665
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=0.00029 Score=54.67 Aligned_cols=91 Identities=15% Similarity=-0.008 Sum_probs=58.8
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLIS 234 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~ 234 (513)
+...+.+.|++++|.+.|+...+..+.+. ..+..+..++...|++++|+..|++..+. .|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHH
Confidence 44555667777777777777666544333 46666667777777777777777776654 233 455666666
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 010292 235 VFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~ 255 (513)
++.+.|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777777766654
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=0.00011 Score=71.55 Aligned_cols=123 Identities=6% Similarity=-0.038 Sum_probs=66.8
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---------------IVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
....|..+...|.+.|++++|+..|++..+.. +.+ ...|..+..++.+.|++++|+..|++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44555555555555555555555555555421 111 3555666666666666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010292 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
+... .+...|..+..+|...|++++|...|++..+. .| +...+..+..++.+.++.+++.
T Consensus 345 ~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 345 GLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 24555666666666666666666666666553 23 2345555555555555555544
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=2.8e-05 Score=76.08 Aligned_cols=121 Identities=7% Similarity=-0.116 Sum_probs=96.4
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 241 (513)
+...+.+.|++++|.+.|++..+..+.+...|..+..+|.+.|++++|++.|++..+. -+-+...|..+..++.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3445678899999999999999887768999999999999999999999999999874 24467889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHccCHHHHHHHHH
Q 010292 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAG--YMTAWMWGKVEEIYQ 285 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 285 (513)
+++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999875432 33455555555 888899999999998
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=2.4e-05 Score=76.65 Aligned_cols=121 Identities=11% Similarity=-0.064 Sum_probs=93.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010292 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 453 (513)
...+.+.|++++|++.|++.++. .|.+...|..+..+|.+.|++++|.+.+++..+... -+...|..+..+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 34466789999999999998885 455677889999999999999999999999987653 257788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHH
Q 010292 454 VEEMESVLKEMENYKIDCSKKTFWIMYYA--YATCGQRRKVNQVLGL 498 (513)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 498 (513)
+++|.+.|++..+.+ +-+...+..+..+ +.+.|++++|++++++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999988764 3344556656555 8888999999999883
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=8.2e-05 Score=72.45 Aligned_cols=128 Identities=9% Similarity=-0.010 Sum_probs=94.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-cc-cHhhH
Q 010292 375 RVYAKEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RL-CRSLY 441 (513)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~-~~~~~ 441 (513)
..+...|++++|+.++++.++. | ..|....+++.|...|...|++++|..++++..+ .|. .| ...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456779999999988877652 1 2344567789999999999999999998887643 232 22 34568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010292 442 HSKMVMYASQRRVEEMESVLKEMENY-----KI-DC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+.|...|...|++++|+.++++..+- |- .| ...+.+.+-.++...|.+++|..+++++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998876541 31 12 2345566778888899999999999998763
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=1.6e-05 Score=77.43 Aligned_cols=120 Identities=8% Similarity=-0.144 Sum_probs=52.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 222 (513)
.|..+...|.+.|++++|...|++..+....+ ...|..+..+|.+.|++++|+..|++..+. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--D 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 33444444444555555555555444433222 344444444455555555555555544432 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH
Q 010292 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280 (513)
Q Consensus 223 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 280 (513)
+.+...|..+..+|...|++++|+..|++..+... -+...+..+..++.+.|+.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 22344444444445555555555555554444321 1233444444444444444433
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=0.00024 Score=55.15 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHH
Q 010292 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I---VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNY 266 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ 266 (513)
..+...+...|++++|.+.|++..+. .|+ . ..+..+..++.+.|++++|...|++..+.... + ..++..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 34555666777777777777777654 232 2 35666667777777777777777777654321 2 455666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHc
Q 010292 267 LIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+..++.+.|++++|.+.|+++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777776665
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.0014 Score=65.40 Aligned_cols=172 Identities=6% Similarity=-0.103 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
..++|++.++.+...++.+..+|+.--.++.+.|+ ++++++.++.+.+. -+-+..+|+.-.-++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34566777777777666666677666666665555 77777777777764 2345566766666666777
Q ss_pred --ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------
Q 010292 241 --LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-------- 309 (513)
Q Consensus 241 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------- 309 (513)
+++++++.++++.+... -|..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 55777777777777654 36777777777777777 677777777777765433 566666666555552
Q ss_pred ------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 310 ------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 310 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.++++.+.++...... +.+...|.-+-..+.+.+..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45678888888877753 45777888777777776653
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=0.00023 Score=67.06 Aligned_cols=121 Identities=6% Similarity=-0.114 Sum_probs=76.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHh----------------ccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAAN----------------KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~----------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 221 (513)
.+..+...+.+.|++++|++.|++..+ ....+...|..+..+|.+.|++++|++.+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 466677777888888888888887765 21124566666677777777777777777776642
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010292 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
-+-+...|..+..++...|++++|+..|++..+... -+...+..+...+.+.++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 123455666666677777777777777776665432 14555555555555555555444
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=4.5e-05 Score=58.47 Aligned_cols=89 Identities=8% Similarity=-0.083 Sum_probs=69.8
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHH
Q 010292 379 KEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 457 (513)
..|++++|+..|++.++.+. .|.+...+..+...|...|++++|...+++..+.... +...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 46888999999999888531 3556677888999999999999999999998876643 467788888999999999999
Q ss_pred HHHHHHHHhCC
Q 010292 458 ESVLKEMENYK 468 (513)
Q Consensus 458 ~~~~~~m~~~~ 468 (513)
...+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887653
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00041 Score=56.56 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhc------------------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANK------------------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
...+......+.+.|++++|++.|++.... ...+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777778888888888888887664 22234567777777777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010292 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
+. -+.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 1345667777777777777777777777777664
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.0005 Score=56.02 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=55.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA------NI----------SPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------g~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (513)
....+......+.+.|++++|+..|.+..... .- +-+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45677788888999999999999999887530 00 011234444444455555555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.+... .+...|..+..+|...|++++|...|++...
T Consensus 90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44322 1344444444445555555555555444443
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00046 Score=54.57 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHH
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVE 455 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 455 (513)
.+++++|.++|++..+.+... . . +...|...+.+++|.++|++..+.| +...+..|-..|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--G--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--H--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--h--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 356888999998888876332 2 2 6666777788888999999888776 45666777777877 88999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 010292 456 EMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 505 (513)
+|..+|++..+.| +...+..|...|.. .++.++|.++|++..+.|..
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999998876 45677788888888 88999999999998888753
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.70 E-value=8.5e-05 Score=56.89 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010292 169 INNVDLAADLFAEAANKH---LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245 (513)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 245 (513)
.|++++|+..|++..+.+ +.+...|..+...|...|++++|++.|++..+. .+-+...+..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 456666666666666653 225566666666666777777777777766654 133455666666666677777777
Q ss_pred HHHHHHHHHC
Q 010292 246 EAAFQEIKDS 255 (513)
Q Consensus 246 ~~~~~~m~~~ 255 (513)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7766666543
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.0023 Score=63.76 Aligned_cols=174 Identities=11% Similarity=-0.006 Sum_probs=138.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010292 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAY 200 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 200 (513)
+...++|++.++.+... .|-+..+|+.--.++.+.|+ ++++++.++.+.+..+++..+|+.-.-.+
T Consensus 42 ~~~~eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44566788888887765 34466777776666666666 99999999999999888999999999889
Q ss_pred HHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 010292 201 MYNG--LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA--- 274 (513)
Q Consensus 201 ~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--- 274 (513)
.+.| +++++++.++++.+. -+-|...|+.-..++.+.| .++++++.++++.+..+. |..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 9999 679999999999986 2567889998888888888 899999999999987653 889999988887773
Q ss_pred -----------cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChH
Q 010292 275 -----------WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 275 -----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 313 (513)
+.++++++.+++..... | |...|..+-..+.+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence 56788999998887633 4 5677777766676666643
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=0.00021 Score=66.40 Aligned_cols=146 Identities=8% Similarity=-0.068 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010292 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+.+.|++++|...|++.......+.. +...|+.+++... +. ...|+.+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~---l~--------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALA---VK--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHH---HH--------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHH---HH--------HHHHHHHHHHH
Confidence 34556666777777777777777776654322210 0111111111111 10 02455566666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH-HHhcCChHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRG-YAHSGNLPR 314 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~ 314 (513)
.+.|++++|+..+++..+... -+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655432 24556666666666666666666666665542 232 2233333332 122344555
Q ss_pred HHHHHHHHHh
Q 010292 315 MEKIYELVKH 324 (513)
Q Consensus 315 a~~~~~~~~~ 324 (513)
+.++|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 5556655544
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.00048 Score=64.85 Aligned_cols=120 Identities=8% Similarity=-0.024 Sum_probs=88.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--------------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEH--------------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 438 (513)
+...+.+.|++++|++.|++.++. ...+....+|..+..+|.+.|++++|++.+++..+... -+.
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~ 307 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNT 307 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhH
Confidence 444555556666666555555430 02234566788889999999999999999999987553 256
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010292 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (513)
..|..+..+|...|++++|...|++..+.. +-+...+..+...+...++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999988765 4467777788888888887777654
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.67 E-value=0.002 Score=51.56 Aligned_cols=94 Identities=9% Similarity=-0.084 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------I-----VTYNTLISVFGRLLLVDHMEAAFQEIKDS--- 255 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 255 (513)
.+......+.+.|++++|++.|++..+- .|+ . ..|+.+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4445555566667777777777666643 233 1 25555555566666666666655555542
Q ss_pred --CCCCC-HHHH----HHHHHHHHHccCHHHHHHHHHHHH
Q 010292 256 --NLSPN-VFTY----NYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 256 --g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
.+.|+ ...| .....++...|++++|+..|++..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 01232 2344 555555555566666665555544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.00077 Score=53.95 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=55.8
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC
Q 010292 408 CIVSSYFRCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----KIDC 471 (513)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p 471 (513)
.....+...|++++|...|++..+..... +...|..+..++.+.|++++|+..+++..+. .+.|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 34444445555555555555544322110 1225666666777777777777777776664 1123
Q ss_pred -CHHHH----HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 472 -SKKTF----WIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 472 -~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+...| .....++...|++++|+..|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44566 6777777788888888887777654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=5.5e-05 Score=57.06 Aligned_cols=90 Identities=9% Similarity=-0.094 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------HHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-------IVT 228 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-------~~~ 228 (513)
...+..+...+.+.|++++|.+.|++..+..+.+...|..+..++.+.|++++|++.|++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHHH
Confidence 4455566666666677777777777666655556666666666666777777777777666642 343 334
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 010292 229 YNTLISVFGRLLLVDHMEAA 248 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~ 248 (513)
+..+..++...|+.+.|...
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHhHhhhHhH
Confidence 44444444444444444433
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.56 E-value=0.00038 Score=51.43 Aligned_cols=65 Identities=17% Similarity=0.064 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
-+...+..+..+|.+.|++++|++.|++..+..+.+...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36667777778888888888888888888777666777788888888888888888888877664
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.55 E-value=0.00036 Score=64.87 Aligned_cols=144 Identities=6% Similarity=-0.037 Sum_probs=88.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
....|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHH
Confidence 3556778888889999999999999998864 455432 22233334433222 1 13788899
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-hcCCh
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS-KCSVT 347 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 347 (513)
.+|.+.|++++|+..+++..+.. .-+...|..+..+|...|++++|.+.|+...+.. +.+...+..+..... ..+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988743 2368899999999999999999999999988753 224445555554423 23434
Q ss_pred hHHHHHH
Q 010292 348 DRIKKIE 354 (513)
Q Consensus 348 ~~a~~~~ 354 (513)
+.+...+
T Consensus 316 ~~a~~~~ 322 (338)
T 2if4_A 316 QKQKEMY 322 (338)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.52 E-value=0.0014 Score=51.76 Aligned_cols=110 Identities=7% Similarity=-0.164 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 010292 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHME 246 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 246 (513)
++++|.+.|++..+.|.+... |...|...+.+++|++.|++..+. -+...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 445555555555554432222 444444444455555555555442 244444445555544 44555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCC
Q 010292 247 AAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 291 (513)
..|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554432 34444444444444 445555555555544433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.0012 Score=49.96 Aligned_cols=78 Identities=9% Similarity=-0.091 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292 175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
|++.|++..+..+.+...|..+...|...|++++|+..|++..+. .+.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555544445556666666666666666666666666543 123345555566666666666666666665543
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.0013 Score=63.99 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCCc-c-cH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGWR-L-CR 438 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~-~-~~ 438 (513)
.|...|...|++++|+.++++.++- ...|....+++.|...|...|++++|+.++++..+ .|.. | ..
T Consensus 356 nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 356 IASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 4677777778888887777765541 23445566788999999999999999998887643 3322 2 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 439 SLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.+.+.+-.++...+.+++|+.+|..+++
T Consensus 436 ~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 436 DLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888999999999998876
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.0019 Score=46.21 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...+..+...+.+.|++++|.+.|++..+..+.+...|..+...+.+.|++++|++.|++..+. .+-+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 3445555555566666666666666665554445555666666666666666666666665543 12234444444444
Q ss_pred H
Q 010292 236 F 236 (513)
Q Consensus 236 ~ 236 (513)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.0012 Score=50.06 Aligned_cols=79 Identities=11% Similarity=-0.140 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010292 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (513)
|+..++...+. .+.+...+..+...|.+.|++++|.+.|++..+..+.+...|..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566655543 34478889999999999999999999999999887778899999999999999999999999998
Q ss_pred HHh
Q 010292 217 KKE 219 (513)
Q Consensus 217 ~~~ 219 (513)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.32 E-value=0.0032 Score=44.94 Aligned_cols=82 Identities=9% Similarity=-0.005 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482 (513)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (513)
...+..+...+...|++++|...+++..+... .+...+..+...+.+.|++++|...+++..+.+ +-+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44566666777777888888887777765542 245566677777778888888888888777654 3355566666655
Q ss_pred HHhc
Q 010292 483 YATC 486 (513)
Q Consensus 483 ~~~~ 486 (513)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.0013 Score=49.17 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
.|..+...+...|++++|++.|++..+. .+.+...|..+..++.+.|++++|+..|++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444444444444444444432 122334444444444444444444444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.26 E-value=0.00086 Score=53.55 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=62.7
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010292 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS----------DKCQSLFRDLKKEANISP-SIVTYNTLISV 235 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~ 235 (513)
.+.+.+++|.+.++...+..+.+...|+.+..++...+++ ++|+..|++..+. .| +...|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence 4556778888888888887777888888887777777664 4777777777754 34 45677777777
Q ss_pred HHhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 010292 236 FGRLL-----------LVDHMEAAFQEIKDSNLSPNVFTYN 265 (513)
Q Consensus 236 ~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~ 265 (513)
|...| ++++|+..|++..+. .|+...|.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 76654 566666666665553 34444443
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.017 Score=53.00 Aligned_cols=50 Identities=10% Similarity=-0.040 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 010292 152 TPMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLKTIGTYNALLGAYM 201 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 201 (513)
.+.+...|...+++... ..+..+|..+|++..+..+.....|..+..+|.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567777777766532 234578888888888877666666666555554
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.09 E-value=0.0021 Score=51.30 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=67.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV----------DHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
.+.+++++|++.++...+. -+-+...|+.+..++...+++ ++|+..|++.++.... +..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 4556788888888888865 245677888788888777664 4788888877775432 56677777777
Q ss_pred HHHcc-----------CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010292 271 YMTAW-----------MWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 271 ~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
|...| ++++|++.|++..+ +.|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 77664 67777777777666 4466555544443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.08 E-value=0.003 Score=46.47 Aligned_cols=67 Identities=4% Similarity=-0.007 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
|.+...+..+...|...|++++|...+++..+.... +...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556677888999999999999999999998876533 5667888999999999999999999887653
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0061 Score=58.25 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=65.9
Q ss_pred hcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-ccc-HhhHHHHH
Q 010292 379 KEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RLC-RSLYHSKM 445 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li 445 (513)
..|++++|+.++++.++. | ..|....+++.|..+|...|++++|+.++++..+ .|. .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999888876652 1 2234456788999999999999999999887643 231 233 45588888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 010292 446 VMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~ 466 (513)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999887654
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.052 Score=56.82 Aligned_cols=46 Identities=4% Similarity=0.011 Sum_probs=22.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445555555543322 234455555555555555555555555443
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.0095 Score=56.97 Aligned_cols=94 Identities=6% Similarity=-0.007 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cC-Ccc-cHh
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHK------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AG-WRL-CRS 439 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~~-~~~ 439 (513)
.+..+...|++++|+.++++.++.. ..+....+++.+..+|...|++++|+.++++..+ .| ..| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667789999999998887632 2233466789999999999999999999997753 22 123 345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 440 LYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688899999999999999999987664
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.076 Score=55.59 Aligned_cols=120 Identities=3% Similarity=-0.032 Sum_probs=76.0
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 198 GAYMYNGLSDKCQS-LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 198 ~~~~~~g~~~~A~~-~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.++-. .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 34456778888766 44221 112233677777888888888877653211 11234456788
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
+++|.++.+.+ .+...|..+...+.+.++++.|+++|..+.+ |..+...|...|+.+...
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 88888876544 3567888888888888888888888887655 334555555566555433
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.0078 Score=57.50 Aligned_cols=87 Identities=6% Similarity=-0.018 Sum_probs=67.7
Q ss_pred hcCcHHHHHHHHHHHHhc---CCc---c-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHH
Q 010292 415 RCNAVDKLANFVKRAESA---GWR---L-CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDC-SKKTFWIMY 480 (513)
Q Consensus 415 ~~~~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~li 480 (513)
..|++++|+.++++..+. -+. | ...+++.|..+|...|++++|+.++++..+- | -.| ...+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999876532 111 2 3467899999999999999999999887652 2 123 346788999
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 010292 481 YAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~m~~ 501 (513)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.52 E-value=0.013 Score=56.14 Aligned_cols=92 Identities=8% Similarity=-0.117 Sum_probs=71.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcC---Cc----ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHH
Q 010292 410 VSSYFRCNAVDKLANFVKRAESAG---WR----LCRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDC-SKKT 475 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~m~~~~---~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~ 475 (513)
+..+...|++++|++++++..+.. +. ....+++.+...|...|++++|+.++++...- | -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999886431 11 23566889999999999999999999877642 2 123 3467
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 476 FWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
++.|...|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988653
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.40 E-value=0.17 Score=38.52 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C----------------CcccHhhHH
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-G----------------WRLCRSLYH 442 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----------------~~~~~~~~~ 442 (513)
.|.+++..++..+..... +..-||-+|--....-+-+-..++++.+-+. . ...+...++
T Consensus 20 dG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd 95 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 95 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred hhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence 466677777777666532 2223555555444455555555555544210 0 012344567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010292 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
..++.+..+|+-|+-.+++.++.. +.+|++...-.+..+|.+-|+..+|.+++.+.-+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 778888999999999999999754 44788999999999999999999999999999999975
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.39 E-value=0.23 Score=45.61 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=95.4
Q ss_pred CCHhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--ChhHH---HHHHHHHH
Q 010292 188 KTIGTYNALLGAYMY--NG---LSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGR---LL--LVDHM---EAAFQEIK 253 (513)
Q Consensus 188 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~---~g--~~~~A---~~~~~~m~ 253 (513)
.+...|...+++... .+ ...+|+.+|++..+. .|+ ...|..+.-++.- .+ .-... ...++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 388899998877543 33 358999999999975 566 3445443333321 11 11111 11222211
Q ss_pred H-CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010292 254 D-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332 (513)
Q Consensus 254 ~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (513)
. .....+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1124578888888877777899999999999998854 78888888888889999999999999988875 35555
Q ss_pred HHH
Q 010292 333 LIR 335 (513)
Q Consensus 333 ~~~ 335 (513)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.20 E-value=0.053 Score=39.14 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=46.3
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 162 GIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
....+.+.|++++|.+.|++..+..+.+.. .|..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566778888888888888877666777 8888888888888888888888888765
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.19 E-value=0.082 Score=37.94 Aligned_cols=67 Identities=7% Similarity=-0.037 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010292 153 PMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
+.|...+..+..++...++ .++|..+|++..+..+.++.....+...+.+.|++++|+..|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456666666666543333 577777777777776667777777777777777777777777777753
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.16 E-value=0.29 Score=37.23 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 434 (513)
.+..+...|+-++..+++.++.. ..++++..+-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444444555555444444322 2222233344455555555555555555555544443
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.12 E-value=0.015 Score=42.24 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=36.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 433 (513)
....+...|++++|.+.|++.++.. |.+.. .+..+..+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445566677777777776666632 33444 56666666666677777777666665543
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.55 Score=37.96 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=56.2
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010292 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... |..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 3445566666666666554 2456666666666666776666666665541 223344444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010292 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
.-.++-+.....|- +|....++.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444443333331 44444555556666666666644
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.83 E-value=0.07 Score=38.33 Aligned_cols=68 Identities=7% Similarity=-0.036 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010292 400 VTTVRIMRCIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
|.+...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+++.+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4455566666666654444 67888888887765533 45666666777778888888888888887765
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.76 E-value=0.13 Score=45.37 Aligned_cols=110 Identities=6% Similarity=-0.033 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc-CCHH
Q 010292 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ-RRVE 455 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~ 455 (513)
....|...+++.++....-.+...|..+...|.. -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3566677777777744333355678888888888 489999999999988766433466677777888874 8899
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 456 EMESVLKEMENYKID--CSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
+|.+.+++....... |+....+.+-+ ++|..+++++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~ 295 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHh
Confidence 999999998887665 66544443332 4555555544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.64 E-value=0.088 Score=38.70 Aligned_cols=64 Identities=19% Similarity=0.070 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+...+-.+...+.+.|+++.|...|+...+. +......+..|..++.+.|++++|+..+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4555556666667777777777777665543 122455666666667777777777777766664
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.86 Score=36.83 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=21.5
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010292 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
+.|+++.|.++.+++ -+...|..|.......|+++-|+++|....
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344555555544443 134445555555555555555555554433
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.34 E-value=0.11 Score=40.86 Aligned_cols=87 Identities=10% Similarity=0.012 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHH
Q 010292 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---AVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~ 455 (513)
+.+..+.+.|.+....+. .+..+...+..++++++ +.+++..+++...+.. .| ....+-.+.-+|.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 456677777877766544 34455556888899988 6779999999988765 23 3445555677889999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 010292 456 EMESVLKEMENYKIDCS 472 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~ 472 (513)
+|.+.++.+.+. .|+
T Consensus 89 ~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 89 KALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHhc--CCC
Confidence 999999999885 454
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.23 E-value=0.14 Score=40.29 Aligned_cols=77 Identities=12% Similarity=-0.091 Sum_probs=30.6
Q ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 010292 176 ADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAAFQ 250 (513)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (513)
.+-|.+....+.++..+...+..++++++ +.++++.+|++..+. . .| +...+-.|.-++.+.|+++.|.+.++
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33333333333334444444444444444 333444444444433 1 12 12222223333344444444444444
Q ss_pred HHHH
Q 010292 251 EIKD 254 (513)
Q Consensus 251 ~m~~ 254 (513)
.+.+
T Consensus 96 ~lL~ 99 (152)
T 1pc2_A 96 GLLQ 99 (152)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.16 E-value=0.26 Score=43.46 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-C
Q 010292 171 NVDLAADLFAEAANKHLK--TIGTYNALLGAYMY-----NGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRL-L 240 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~-g 240 (513)
....|..++++..+..+. +...|..+...|.+ .|+.++|.+.|++..+. .| +..++......+++. |
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 457788888888887765 67789999999999 49999999999999875 56 378888888888885 9
Q ss_pred ChhHHHHHHHHHHHCCCC--CCHHHHHHH
Q 010292 241 LVDHMEAAFQEIKDSNLS--PNVFTYNYL 267 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~--p~~~~~~~l 267 (513)
+.++|.+.+++....... |+....|.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999999987666 665544443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.16 E-value=0.17 Score=39.32 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
++.++|.++|+.+.+..-+- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44444444444443321111 3334444444444444444444444444433
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.70 E-value=0.19 Score=36.88 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 010292 299 YLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
+..+..++.+.|+++.|...+++.
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 333333333333333333333333
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.67 E-value=3 Score=39.82 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhcc-----CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 010292 170 NNVDLAADLFAEAANKH-----LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~ 223 (513)
|+++.|++.+-.+.+.. .+ +......++..|...|+++...+.+..+.+..|..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql 89 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL 89 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh
Confidence 67888888776665431 22 45667788888888899988888887776554443
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.40 E-value=2.8 Score=43.71 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=77.9
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA--YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 383 (513)
++-.|+-+....++..+.+.. +..+...+.-+ +...|+.+.+..+.+.+.....+......-..+..+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 334566666666666655431 22333333333 3356777777777676665433222211111344566677777
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHH
Q 010292 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLK 462 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 462 (513)
....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|+.++.
T Consensus 577 ~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 66666776666532 2233323333334444555555556655544433 34444444444444444443 56666777
Q ss_pred HHHh
Q 010292 463 EMEN 466 (513)
Q Consensus 463 ~m~~ 466 (513)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7653
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.28 E-value=2.3 Score=44.33 Aligned_cols=260 Identities=8% Similarity=-0.065 Sum_probs=136.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CC-----CCHHHHHHHHHHH
Q 010292 236 FGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VM-----PDTNTYLLLLRGY 306 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~-----p~~~t~~~ll~~~ 306 (513)
....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++....... +. +....-.++--++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566777878777766554211122 2333444455666776667777776655421 10 1111122232233
Q ss_pred HhcCC-hHHHHHHHHHHHhccCCCcHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010292 307 AHSGN-LPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383 (513)
Q Consensus 307 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 383 (513)
+-.|. -+++.+.+..+..... ....... +|--.+...|+-+....++..+.+-...++. . ...+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vr-R-~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNIT-R-GLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHH-H-HHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHH-H-HHHHHHHhhhCCCh
Confidence 33332 2345555555544321 1111122 2333345667766666666665543222111 1 12344445567888
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
+.+..+++.+............-.++.-+|+..|+.....+++..+.... ..++.....+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 88888877776532211111112244557788889888888998887543 22344344444455556776667777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 010292 464 MENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMC 500 (513)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 500 (513)
+.+.+ .|..+--..+..+....|+. .+|.+++..+.
T Consensus 620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66544 45555555566666666665 56777777765
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.85 E-value=1.4 Score=33.26 Aligned_cols=94 Identities=11% Similarity=0.008 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcCCc-ccHhhHHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK---LANFVKRAESAGWR-LCRSLYHSKMVMY 448 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~ 448 (513)
++........+..+.+-|.+....+. +. ..+--.+..++.++.+... ++.+++.+.+.+.+ -.....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s-~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VS-KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CC-HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-Cc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34444455566677777776666544 33 3333457778888876665 88888888765421 1333444566788
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 010292 449 ASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~ 468 (513)
.+.|++++|.+.++.+.+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 89999999999999988753
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.70 E-value=0.49 Score=44.41 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD-----SNLSPNVFTYN 265 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 265 (513)
+...++..+...|++++|+..+..+... .+-+...|..+|.++.+.|+..+|++.|+++.+ .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4556777788888888888888888764 355777888888888888888888888887653 48888876544
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.56 E-value=2.4e-05 Score=73.19 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
.+.+|..|.++..+.+++.+|++.|-+. .|+..|..+|.+..+.|.+++-+..+.-.++. .-+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence 3446777888887777777765544221 26677888888888888888888877755543 233344457888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
+|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 8888888766443321 25665566677777788888877777765543 2233333445555554
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 393 (513)
|.+. .....+..||..+-.+|...+.+..|..+ +.+. ...+-.. .++..|-..|.+++.+.+++..
T Consensus 189 AVda------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhadeL~----elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 189 AVDG------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELE----ELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp STTT------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSCCS----GGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHH------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHHHH----HHHHHHHhCCCHHHHHHHHHHH
Confidence 4322 11223555667777777777766655433 1111 1222222 2566677777777777777766
Q ss_pred HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCc------ccHhhHHHHHHHHHhcCCHHHHH
Q 010292 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWR------LCRSLYHSKMVMYASQRRVEEME 458 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~------~~~~~~~~li~~~~~~g~~~~A~ 458 (513)
+. .......+|+-|.-.|++- +.++.++.++..- +.+++ -....|.-++-.|++-.++|.|.
T Consensus 256 lg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 256 LG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 53 3444566777777667665 3333333333211 11111 12334666777777777777664
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.43 E-value=2.4 Score=33.08 Aligned_cols=103 Identities=8% Similarity=-0.011 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHhcccCCH------HHHHHHHHHHHhccCCC-HhHHHHHHHH------HHHcCChHHHHHHHHHHHHhCC
Q 010292 155 TKEEYTKGIKFAGRINNV------DLAADLFAEAANKHLKT-IGTYNALLGA------YMYNGLSDKCQSLFRDLKKEAN 221 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~-~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~~g 221 (513)
|..+|-..+...-+.|+. ++.+++|++....-+|+ ...|..-|.. +...++.++|.++|+.+... +
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-C 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-C
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-h
Confidence 555666666666655666 66667777666543332 1111111111 12236777777777777653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010292 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 259 (513)
-+- ...|......=.+.|++..|.+++......+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 121 5555555566667777777777777777666543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.26 E-value=2.8 Score=31.60 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc----cchHHHHHHHHHhcCCHHHHH
Q 010292 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR----PWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~ 387 (513)
+..+.+-+......|. ++..+-..+..++.+..+.....+.+.++.+....+.. ...| .+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY-~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF-YLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH-HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHhhhHHHHH
Confidence 3444555554444443 55666666777777777777766777777666554411 1113 3677788888888888
Q ss_pred HHHHHHHhcC
Q 010292 388 KSINDAFEHK 397 (513)
Q Consensus 388 ~~~~~~~~~~ 397 (513)
+.++.+++..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8888887743
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.82 E-value=3 Score=45.38 Aligned_cols=80 Identities=10% Similarity=0.018 Sum_probs=43.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCC--CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVM--PD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
|..++..+-+.|.++.+.++-+...+..-. ++ ...|..+.+++...|++++|...+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 566666666667666666665554432111 11 12456666777777777777666655554322 2333445555
Q ss_pred HHHhcC
Q 010292 340 AYSKCS 345 (513)
Q Consensus 340 ~~~~~g 345 (513)
.+|..|
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 555443
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.75 E-value=5 Score=43.66 Aligned_cols=130 Identities=8% Similarity=0.051 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKT-SVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 446 (513)
|.-++..+.+.+.++.+.++-+..++... ..+ ....|..+..++...|++++|...+-.+.....+ ......||.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 44567777788888888877766555322 121 1235778888888889999888888777654433 344566666
Q ss_pred HHHhcCCHHH------------HHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHhHHHH-HHHHHHH
Q 010292 447 MYASQRRVEE------------MESVLKEMEN-Y-KIDCSKKTFWIMYYAYATCGQRRKVNQ-VLGLMCK 501 (513)
Q Consensus 447 ~~~~~g~~~~------------A~~~~~~m~~-~-~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~ 501 (513)
.+|..|..+. ..+++..-.+ . .+...+.-|..|-.-+...|++..|.. +|+...+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 6666655443 3334432211 1 111122346666666777888866554 4555544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.51 E-value=2 Score=43.73 Aligned_cols=125 Identities=6% Similarity=-0.034 Sum_probs=74.2
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhc------CCcc-cH-----
Q 010292 373 LIRVYAKEDC-LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA-VDKLANFVKRAESA------GWRL-CR----- 438 (513)
Q Consensus 373 li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~~-~~----- 438 (513)
++..+...++ ++.|.++|+++....... ......+++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 4555555555 577888888877753322 12222233333333332 22344444443211 1111 11
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 439 -----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 439 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
...+.=.+.+...|+++-|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.|
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 011111345567899999999999988753 456889999999999999999999888876
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.83 E-value=0.92 Score=42.54 Aligned_cols=57 Identities=7% Similarity=0.114 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010292 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
..++..+...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555555555555444322 224445555555555555555555555543
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.21 E-value=3.8 Score=29.29 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
..++-..|...-+....|++.+..+.+++|-+.+++..|.++|+.++.+-.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33444444444445567777777777777777777777777777766543223345555554
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.10 E-value=2 Score=43.82 Aligned_cols=59 Identities=7% Similarity=-0.064 Sum_probs=43.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHhHHHHHHHH
Q 010292 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG---------QRRKVNQVLGL 498 (513)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~ 498 (513)
..-|..|....-+.+++++|.+.|+..... +-+...+.-|+..|...+ +.+..+.+.-+
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ik 680 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIK 680 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHH
Confidence 334788877788888899999988888864 467788888888888776 55555554433
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.59 E-value=21 Score=35.57 Aligned_cols=116 Identities=9% Similarity=0.025 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010292 382 CLEEMEKSINDAFEHKTSVTTV--RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
+.+.|...+..........+.. .....+.......+...++...+....... .+.......+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 5677777776665433221111 112222223333342334444444433222 222233344444456677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010292 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.|+.|..... ....-.--+.+++...|+.++|..+|+++.
T Consensus 307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777765321 122223345556677777777777777654
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.58 E-value=15 Score=34.06 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcccHhhHH---
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKT----SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYH--- 442 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~--- 442 (513)
-++..|...|++.+|.+++.++.+.-. ...-..+|..-+..|...+++.++...+...... .+.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777777888887777776665211 1122344556667777778888777777765422 1212222211
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHH
Q 010292 443 -SKMVMYA-SQRRVEEMESVLKEM 464 (513)
Q Consensus 443 -~li~~~~-~~g~~~~A~~~~~~m 464 (513)
+-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122334 677777777766554
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.47 E-value=3.2 Score=29.65 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
.-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.... ....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 335666666666667777888888888888888888888888777665422 22334554443
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.16 E-value=6.3 Score=29.91 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010292 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
..++-..|...-+....|++.+....+++|-+.+++..|..+|+-++.+-.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33444444444455577777777777777777777777777777776543333445655554
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.90 E-value=4 Score=32.41 Aligned_cols=115 Identities=5% Similarity=-0.152 Sum_probs=62.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcc--CCC-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKH--LKT-------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN 230 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~ 230 (513)
.-++.+...|.++.|+-+.+.+.... .++ ..++..+..++...|++.+|...|++..+....-+.. .++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34667778888888887777654321 112 2366777888999999999999999865432221211 1111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
.+- ....... ......+...---+-.||.+.|++++|+.+++.+.
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 110 0000000 00111233333346677777888888888776653
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.16 E-value=7.2 Score=29.61 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010292 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
+..+-++.+....+.|+.......+++|-+.+|+..|.++|+-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666667778888888888888888888888888888776642 223344555443
No 252
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.51 E-value=0.017 Score=54.45 Aligned_cols=180 Identities=9% Similarity=0.079 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|+..|..+|.+..+.|.+++-...+...++ ..++...=+.|+-+|++.++..+-.+++ . .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~ke~~IDteLi~ayAk~~rL~elEefl----~----~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCCSTTTTHHHHHHHHTSCSSSTTTSTT----S----CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HhcccccHHHHHHHHHhhCcHHHHHHHH----c----CCCcccHHHHHH
Confidence 556677788888888888777777664433 3445556677788888887765543322 1 256555566677
Q ss_pred HHHhcCChhHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSN--------------------LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
-|...|.++.|.-+|..+.... -.-++.||-.+-.+|...+++.-|.-.--.+.-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 7777777777766665543211 1236678888888888888877665544443321 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010292 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350 (513)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 350 (513)
| -...++..|-..|.+++-+.+++.-... -......|+.|.-.|+|-. .++.
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKl 281 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKM 281 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHH
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHH
Confidence 1 1234556677888888888888876642 2347788999999999874 4433
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.67 E-value=37 Score=32.25 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCccc--HhhH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHK-TSVT---TVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLC--RSLY 441 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~ 441 (513)
.|...|...|++.+|.+++.++...- ...+ -...+...++.|...+++..|..+++++.. ....|+ ...|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 57888999999999999998876431 1111 245677788899999999999999998742 222232 3446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 442 HSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
...+..+...+++.+|...|.+..+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7778888899999999988887754
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.32 E-value=16 Score=27.79 Aligned_cols=60 Identities=2% Similarity=-0.168 Sum_probs=41.1
Q ss_pred HHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010292 408 CIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 408 ~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
....++.++.+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35556666654 4467788887776653223455556667888888888888888888864
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.01 E-value=17 Score=28.91 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010292 474 KTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..---+..+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 33345778889999999999888754
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.35 E-value=18 Score=27.40 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY---RPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
..|+..+--.+..++.+..+.+...+.+.++.++-..+. ....| .+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LY-yLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLY-YLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344555555566666666666555555555444332221 11112 3666677777777777777776663
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.31 E-value=15 Score=30.27 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010292 419 VDKLANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 419 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
..++.++|..|...|+.-. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544443221 2334444444555555555555555555544444
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.43 E-value=45 Score=31.40 Aligned_cols=95 Identities=17% Similarity=0.098 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cCCcccHhh--HHHHH
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTS-VTTVRIMRCIVSSYFRCNAVDKLANFVKRAES---AGWRLCRSL--YHSKM 445 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~--~~~li 445 (513)
.+...|.+.|++++|.+.|.++...... .....++-.+++.+...+++..+...+.++.. .+..++... ...-.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 5888888999999999999888764221 23456677788888899999999988887743 232232221 11112
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 010292 446 VMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~ 466 (513)
..+...+++.+|...|-+...
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhc
Confidence 223467889998888877654
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.40 E-value=17 Score=25.92 Aligned_cols=79 Identities=6% Similarity=-0.090 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010292 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (513)
.+.++|..|-+.+... |. ...+--+-+..+.+.|++++|..+.+.+. .||...|-.|-.. +.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 3567777777777654 21 22222233345677888888888776664 5788887776543 66777777777
Q ss_pred HHHHHcCC
Q 010292 284 YQMMKAGP 291 (513)
Q Consensus 284 ~~~m~~~g 291 (513)
+..+...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 76776655
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.23 E-value=16 Score=25.95 Aligned_cols=79 Identities=8% Similarity=-0.085 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010292 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (513)
.+.++|..|-+.+... |. ...+--+-+..+.+.|++++|..+.+.+. .||...|-.|-. .+.|..+++...
T Consensus 20 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3567777777777654 21 22222233345677888888887766654 578887776654 367777777777
Q ss_pred HHHHHcCC
Q 010292 284 YQMMKAGP 291 (513)
Q Consensus 284 ~~~m~~~g 291 (513)
+..+...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 77777665
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.15 E-value=10 Score=32.92 Aligned_cols=116 Identities=6% Similarity=-0.063 Sum_probs=69.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cccHhhHHHHHHHHHhcC
Q 010292 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW--RLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g 452 (513)
....+.|.+++|++...+-++. .|.+...=..++..+|-.|++++|.+-++...+... .|...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 3456778888888888777774 355555566788888888999988888887765432 2223334444432
Q ss_pred CHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCCHhHHHHHHHHHHHC
Q 010292 453 RVEEMESVLKEMENYKIDC-----SKKTFWIMYYAYA--TCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 502 (513)
+..=.++..-+-.| ...-...++.+.. ..|+.++|.++-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333222111 2223335555543 568888888887777543
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.53 E-value=32 Score=28.32 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010292 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 438 (513)
.+...++.++|..|..++........|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34467889999999998887777888888889999999999999999998888888743
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.32 E-value=45 Score=29.76 Aligned_cols=187 Identities=7% Similarity=-0.059 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH----
Q 010292 172 VDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM---- 245 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A---- 245 (513)
+++.+.-++.-.+.|-- -...|.++..-|.+.+++++|++++..-... +.+.|+...|
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~----------------ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALS----------------FLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------HHHCCCcchHHHHH
Confidence 33444444444443321 2345666777788888888888887654332 3334544333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHc----CC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010292 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG-KVEEIYQMMKA----GP--VMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
.-+.+-..+.+++++......++..+.....-+ .=.++++++.+ .| -.-|......+...|.+.|++.+|+..
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 334555566677777777777776665533211 12333333332 22 123677888888999999999888876
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 319 YELVKHHVDGKEFPLIRAMICAYSKC---SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
|-. |...+...+..++.-+.+. |...++.-. ..-.+-.|...++...|..+|+...
T Consensus 157 ~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf----------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 157 FML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF----------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH----------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH----------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 641 1111344455444444443 433222111 1123445567788888888887654
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.15 E-value=50 Score=29.75 Aligned_cols=166 Identities=8% Similarity=-0.049 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH----MEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
|.++..-|.+.+++++|++++-.--.. +.+.|+... +.-+++-..+.++++|......++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~~----------------ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQT----------------LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHH----------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344445566667777776665433221 222333322 222334444455555655555555
Q ss_pred HHHHHccCHH-HHHHHHHHHHc----CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 010292 269 AGYMTAWMWG-KVEEIYQMMKA----GP--VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341 (513)
Q Consensus 269 ~~~~~~g~~~-~a~~~~~~m~~----~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (513)
..+.....-+ .=.++.+++.+ .| -.-|......+...|.+.+++.+|+..|- .|..+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 5554433211 11222333221 12 23366777778888888888888877762 23333345665555544
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
.+.+...++.- + .+-.+--|...++...|...++...
T Consensus 178 ~~~~~~~e~dl---------------f-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHTAPL---------------Y-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGGHHH---------------H-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCccHHH---------------H-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44432221111 0 1124555666778888887665544
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.14 E-value=25 Score=33.21 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH----
Q 010292 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD---SNLSPNVF---- 262 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~---- 262 (513)
.++..+...|.+.|++++|.++|.++.... +..--...+-.+|..+...+++..|...+++... .+-.|+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 345556666666666666666666665431 1112234555566666666666666666655542 22222211
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.|..+ .+...+++.+|.+.|-+...
T Consensus 212 ~~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhChHHHHHHHHHHHhc
Confidence 11111 12235667776666666543
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.99 E-value=32 Score=31.40 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCc
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLANFVKRAESAGWR 435 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~ 435 (513)
.++.-|...|+.++|.+.++++... ......+..++..++-+.+ ..+...+++..+...|+-
T Consensus 222 ~lL~EY~~s~D~~EA~~ci~EL~~p--~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 222 MLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCT--TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhccCCCHHHHHHHHHHccCC--cchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4777888888999999888887542 1112334455555555543 345567777777766654
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.67 E-value=5.9 Score=34.57 Aligned_cols=88 Identities=8% Similarity=0.132 Sum_probs=45.3
Q ss_pred HhcCcHHHHHHHHHHHHhcCCcccHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 010292 414 FRCNAVDKLANFVKRAESAGWRLCRSL--YHSKMVMYASQRRVEEMESVLKEMENYKIDCSK---KTFWIMYYAYATCGQ 488 (513)
Q Consensus 414 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~ 488 (513)
+..++.....++++.+.+.|..++... -.+.+...++.|+.+-+..+++. .|..++. .-. +.+....+.|+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~-t~l~~A~~~~~ 265 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGK-TALLLAVELKL 265 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSC-CHHHHHHHTTC
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCC-cHHHHHHHcCc
Confidence 345554444566666666776654321 12344555667777655555542 3333321 111 23344455566
Q ss_pred HhHHHHHHHHHHHCCCCCCCC
Q 010292 489 RRKVNQVLGLMCKNGYDVPVN 509 (513)
Q Consensus 489 ~~~A~~~~~~m~~~g~~p~~~ 509 (513)
. ++.+.+.+.|..|+..
T Consensus 266 ~----~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 266 K----KIAELLCKRGASTDCG 282 (285)
T ss_dssp H----HHHHHHHHHSSCSCCS
T ss_pred H----HHHHHHHHcCCCCCcc
Confidence 5 3455556677777654
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.66 E-value=20 Score=27.94 Aligned_cols=51 Identities=4% Similarity=0.016 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010292 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 436 (513)
+.++|..|..++........|......+...|++.+|.++++.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555555544445555555555555566666666665555555554
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.61 E-value=68 Score=29.76 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=84.4
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHH-
Q 010292 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI---VTYNTLISVFGRL-LLVDHMEAAFQEIKDSNLSPNVFTY- 264 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~- 264 (513)
......|...|.+.|+.++..+++...+.-.+.-|-. .....+++.+... +..+.-.++..+..+..- -+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4567778899999999999999998876433333333 2456777777664 334444455544443210 011223
Q ss_pred -----HHHHHHHHHccCHHHHHHHHHHHHcC--CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 265 -----NYLIAGYMTAWMWGKVEEIYQMMKAG--PVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 265 -----~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.-+...|...|++.+|.+++.++.+. .+.. -...|..-++.|...+++..+...+.....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 24677788888888888888777652 1111 134556667777788888888888876654
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=69.35 E-value=68 Score=29.26 Aligned_cols=78 Identities=10% Similarity=0.134 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010292 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR--VEEMESVLKEMENYKIDCSKKTFWIMYYA 482 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (513)
..+.++.-|...|+.++|.+.++++....+.+ ...+..+..++-+.++ .+...+++..+...|+-........+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35778889999999999999999986433332 3334555556655443 45678888888888866544444444443
Q ss_pred H
Q 010292 483 Y 483 (513)
Q Consensus 483 ~ 483 (513)
+
T Consensus 298 l 298 (358)
T 3eiq_C 298 Y 298 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.94 E-value=39 Score=25.98 Aligned_cols=61 Identities=2% Similarity=-0.159 Sum_probs=41.8
Q ss_pred HHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010292 408 CIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 408 ~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
...+++.++.+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+..
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45666777664 44677888877765432233444456668889999999999998888753
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.15 E-value=31 Score=28.92 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=13.4
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
...++.|+.+.+..+++.+.+.|..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33445556655555555555444433
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.49 E-value=42 Score=25.81 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010292 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY---RPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
.++..+--.+..++.++.+.+...+.+.++.++-..+. ....| .+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLY-yLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLY-YLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHH-HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44555555566666666666555555555544332111 11122 3666777777777777777777763
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.76 E-value=26 Score=30.19 Aligned_cols=91 Identities=7% Similarity=-0.056 Sum_probs=46.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 010292 411 SSYFRCNAVDKLANFVKRAESAGWRLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT--FWIMYYAYAT 485 (513)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~ 485 (513)
...+..|+.+-+..+++. .|..++ ....+.+ ...+..++.....++++.+.+.|..++... -.+.+...++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 334456776655554442 143332 2222333 334455665555667777777776654321 1234455566
Q ss_pred cCCHhHHHHHHHHHHH-CCCCCCCC
Q 010292 486 CGQRRKVNQVLGLMCK-NGYDVPVN 509 (513)
Q Consensus 486 ~g~~~~A~~~~~~m~~-~g~~p~~~ 509 (513)
.|+.+.+. .+.+ .|..++..
T Consensus 229 ~~~~~~v~----~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 229 KKHLGLVQ----RLLEQEHIEINDT 249 (285)
T ss_dssp TTCHHHHH----HHHHSSSCCTTCC
T ss_pred cCCHHHHH----HHHhccCCCcccc
Confidence 77765444 4444 56666544
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.34 E-value=19 Score=28.60 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010292 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 422 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
..++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4456666655554322 33455555556666667777776666666665553
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.93 E-value=39 Score=24.14 Aligned_cols=85 Identities=12% Similarity=-0.073 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010292 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (513)
..++|.-|-+-+...+. . ..+-..-+..+.+.|++++|..+.+.. ..||...|..| +-.+.|-.+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--E-EAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--H-HHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 56777766655555433 1 211112234556677777777766532 35666655544 334667777777767
Q ss_pred HHHHhCCCCCCHHHH
Q 010292 462 KEMENYKIDCSKKTF 476 (513)
Q Consensus 462 ~~m~~~~~~p~~~~~ 476 (513)
.++..+| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6776666 4444443
No 277
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.88 E-value=26 Score=32.89 Aligned_cols=308 Identities=14% Similarity=0.085 Sum_probs=137.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT--YNTLISVFGR 238 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~--~~~li~~~~~ 238 (513)
..+...++.|+.+-+..+++.-..-+..+..-+ +.+...+..|+.+- ++.+.+. |..++... -.+.+...++
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~----v~~Ll~~-ga~~~~~~~~g~t~L~~A~~ 122 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNM----VKLLLEN-NANPNLATTAGHTPLHIAAR 122 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHH----HHHHHHH-TCCTTCCCTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHH----HHHHHhC-CCCCCCCCCCCCcHHHHHHH
Confidence 345556777887766666654222111222222 33444456677643 3444443 54444321 1234445566
Q ss_pred cCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHhcCChH
Q 010292 239 LLLVDHMEAAFQEIKDSNLSP---NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN--TYLLLLRGYAHSGNLP 313 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~ 313 (513)
.|+.+.+..+++. |..+ +..-++ .+...+..|+.+-+. .+.+.|..++.. .-.+.+...+..|+.+
T Consensus 123 ~g~~~~v~~Ll~~----~~~~~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 193 (437)
T 1n11_A 123 EGHVETVLALLEK----EASQACMTKKGFT-PLHVAAKYGKVRVAE----LLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193 (437)
T ss_dssp HTCHHHHHHHHHT----TCCSCCCCTTSCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCSSCCCHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHhC----CCCCcCCCCCCCC-HHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 7777666655543 3222 222222 344455667765443 344445444321 1112334445667654
Q ss_pred HHHHHHHHHHhccCCCcHH---HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010292 314 RMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
+++.+.+.|..++.. .++ .+...+..|+.+-+...++.-......+.... ..+...+..|+.+-+..++
T Consensus 194 ----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~---t~L~~A~~~g~~~~v~~Ll 265 (437)
T 1n11_A 194 ----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQYGGSANAESVQGV---TPLHLAAQEGHAEMVALLL 265 (437)
T ss_dssp ----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC---CHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC---CHHHHHHHCCCHHHHHHHH
Confidence 344444555443321 122 33344556665533332221111111222222 1344455667766555443
Q ss_pred HHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh---hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 391 NDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---LYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 391 ~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+.+..+. +..-.+ .+...+..|+.+-+..++ +.|..++.. ..+ .+...+..|+.+-+..+ .
T Consensus 266 ----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~L----l 331 (437)
T 1n11_A 266 ----SKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLI----KHGVMVDATTRMGYT-PLHVASHYGNIKLVKFL----L 331 (437)
T ss_dssp ----TTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCC-HHHHHHHSSCSHHHHHH----H
T ss_pred ----hcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCC-HHHHHHHcCcHHHHHHH----H
Confidence 3322111 111111 233344566665444443 445444321 222 34445567776544444 4
Q ss_pred hCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCC
Q 010292 466 NYKIDCSKK---TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510 (513)
Q Consensus 466 ~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 510 (513)
+.|..++.. -++ -+...++.|+.+ +.+.+.+.|..|+...
T Consensus 332 ~~gad~n~~~~~g~t-~L~~A~~~g~~~----iv~~Ll~~ga~~~~~~ 374 (437)
T 1n11_A 332 QHQADVNAKTKLGYS-PLHQAAQQGHTD----IVTLLLKNGASPNEVS 374 (437)
T ss_dssp HTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCSCCCC
T ss_pred hcCCCCCCCCCCCCC-HHHHHHHCChHH----HHHHHHHCcCCCCCCC
Confidence 445444322 222 333444566654 5556667888887643
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=62.44 E-value=25 Score=29.41 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010292 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 422 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
..++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444333221 2234444444445555555555555544444444
No 279
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.38 E-value=38 Score=24.14 Aligned_cols=86 Identities=10% Similarity=-0.065 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHH
Q 010292 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460 (513)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (513)
...++|.-|-+-+...+. . ..+-..-+..+.+.|++++|..+.+. ...||...|..| +-.+.|-.+++..-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~-E~v~lIR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--D-EAARLIRISSLANQGRYQEALAFAHG----NPWPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHHHTTCHHHHHGGGTT----CCCGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--H-HHHHHHHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHH--HHHhcccHHHHHHH
Confidence 356777766655555433 1 21111223455667777777766553 235666655544 34467777777777
Q ss_pred HHHHHhCCCCCCHHHH
Q 010292 461 LKEMENYKIDCSKKTF 476 (513)
Q Consensus 461 ~~~m~~~~~~p~~~~~ 476 (513)
+.++..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777666 4444444
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.94 E-value=24 Score=27.57 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010292 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 422 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
+.++|..|...|+--. ...|......+...|++++|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6778888876665433 4456777777778888888888888888777777
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.05 E-value=82 Score=27.29 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=35.0
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.+.|++++|++....-.+..+.|...-..+++.+|-.|++++|..-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345666666666666666665555666666666777777777777666666554
No 282
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=58.63 E-value=70 Score=25.68 Aligned_cols=33 Identities=6% Similarity=-0.073 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010292 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
+.+..+++.+.+.|...|......++....+.|
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~ 82 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTS 82 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc
Confidence 345666677777777666666666666655443
No 283
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.46 E-value=44 Score=31.33 Aligned_cols=301 Identities=12% Similarity=0.020 Sum_probs=137.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP---SIVTYNTLISVFG 237 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---~~~~~~~li~~~~ 237 (513)
..+...++.|+.+-+.-+++.-..-+..+..-++ .+...+..|+.+-+..+++. |..+ +...+ +.+...+
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~-t~L~~A~ 154 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEK-----EASQACMTKKGF-TPLHVAA 154 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHT-----TCCSCCCCTTSC-CHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhC-----CCCCcCCCCCCC-CHHHHHH
Confidence 3455567788887666665542221122332233 34445667887665555432 3222 22222 3455556
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHhcCChH
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNVFT--YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT--YLLLLRGYAHSGNLP 313 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~ 313 (513)
..|+.+-+.. +.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 155 ~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 226 (437)
T 1n11_A 155 KYGKVRVAEL----LLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226 (437)
T ss_dssp HTTCHHHHHH----HHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred HcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 7787765544 445555443211 112344455667654 4445555554443211 122344556777776
Q ss_pred HHHHHHHHHHhccCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C---CcccchHHHHHHHHHhcCCHHHH
Q 010292 314 RMEKIYELVKHHVDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLIPE-K---EYRPWLNVLLIRVYAKEDCLEEM 386 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~---~~~~~~~~~li~~~~~~~~~~~a 386 (513)
.+..++ +.|..++. ...+ .+...+..|+.+- .+.+.+... . +...+ ..+...+..|+.+-+
T Consensus 227 ~~~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~---t~L~~A~~~~~~~~~ 294 (437)
T 1n11_A 227 VARSLL----QYGGSANAESVQGVT-PLHLAAQEGHAEM----VALLLSKQANGNLGNKSGL---TPLHLVAQEGHVPVA 294 (437)
T ss_dssp HHHHHH----HTTCCTTCCCTTCCC-HHHHHHHTTCHHH----HHHHHTTTCCTTCCCTTCC---CHHHHHHHHTCHHHH
T ss_pred HHHHHH----HcCCCCCCCCCCCCC-HHHHHHHCCCHHH----HHHHHhcCCCCCCCCCCCC---CHHHHHHHcCCHHHH
Confidence 555554 34433221 2222 3344456666553 333332211 1 11112 234455677887766
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh---hHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---LYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
..+++.-..- ...+..-.+ .+...+..|+.+-+. .+.+.|..++.. -++. +...++.|+.+- ++.
T Consensus 295 ~~Ll~~g~~~--~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~gad~n~~~~~g~t~-L~~A~~~g~~~i----v~~ 362 (437)
T 1n11_A 295 DVLIKHGVMV--DATTRMGYT-PLHVASHYGNIKLVK----FLLQHQADVNAKTKLGYSP-LHQAAQQGHTDI----VTL 362 (437)
T ss_dssp HHHHHHTCCT--TCCCSSCCC-HHHHHHHSSCSHHHH----HHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHH----HHH
T ss_pred HHHHhCCccC--CCCCCCCCC-HHHHHHHcCcHHHHH----HHHhcCCCCCCCCCCCCCH-HHHHHHCChHHH----HHH
Confidence 5555432111 111111112 233345567765444 444456555432 2233 344456677654 444
Q ss_pred HHhCCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010292 464 MENYKIDCSKKT--FWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 464 m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+.+.|..|+... -.+-+....+.|. ....++++....
T Consensus 363 Ll~~ga~~~~~~~~g~t~l~~A~~~g~-~~~~~~l~~~~~ 401 (437)
T 1n11_A 363 LLKNGASPNEVSSDGTTPLAIAKRLGY-ISVTDVLKVVTD 401 (437)
T ss_dssp HHHTTCCSCCCCSSSCCHHHHHHHTTC-HHHHHHHHHHCC
T ss_pred HHHCcCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHHhccc
Confidence 445565554321 1123333445555 445566665543
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.26 E-value=35 Score=27.00 Aligned_cols=56 Identities=7% Similarity=-0.036 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010292 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 439 (513)
+.+.++|..|..++........|......+...|++.+|.++|..-.+.+-.|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34677888888888777777788888888888999999999999888888787543
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.94 E-value=86 Score=26.55 Aligned_cols=29 Identities=0% Similarity=-0.043 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010292 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
.+...-...+..+.+.|+.++|.++|=+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34555555566666677777777666443
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.57 E-value=33 Score=30.01 Aligned_cols=213 Identities=8% Similarity=-0.016 Sum_probs=94.8
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010292 239 LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
..+..+..+++.. .++. .|..-++ .+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHS-ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCC-HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 3445555555543 2221 2333333 3445556777766555544 3433332212334445566777665544
Q ss_pred HHHHHHhccCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010292 318 IYELVKHHVDGKE---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 318 ~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
++ +.|..++ ..-++. +...+..|+.+-++..++.-......+...+ . ..+...+..|+.+-+..+ +
T Consensus 81 Ll----~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-~-t~L~~A~~~~~~~~v~~L----l 149 (285)
T 3kea_A 81 LL----FSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW-K-TSFYHAVMLNDVSIVSYF----L 149 (285)
T ss_dssp HH----HTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGG-G-SHHHHHHHTTCHHHHHHH----H
T ss_pred HH----HCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCccCCCCC-C-CHHHHHHHcCCHHHHHHH----H
Confidence 44 3444332 222223 3344556666543333332111111222221 1 234445566776554443 3
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010292 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
+.+....+...-...+...+..|+.+-+..+++.-...... +..-++..+...++.|+. ++++.+.+.|..++..
T Consensus 150 ~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 150 SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp TTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred hCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 43433322201223344556677777666665543222211 222223334444556664 3455556667666655
Q ss_pred H
Q 010292 475 T 475 (513)
Q Consensus 475 ~ 475 (513)
.
T Consensus 225 ~ 225 (285)
T 3kea_A 225 N 225 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.65 E-value=13 Score=32.62 Aligned_cols=227 Identities=8% Similarity=-0.061 Sum_probs=110.0
Q ss_pred cCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010292 203 NGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
..+.++..+++..- ++ ..|..-++ .+...+..|+.+-+..+++. |..++..--.+.+...+..|+.+-+.
T Consensus 9 ~~~~~~v~~lL~~~----~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 9 TWKSKQLKSFLSSK----DTFKADVHGHS-ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GCCHHHHHHHHHST----TTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred hcCHHHHHHHHHhC----CCCccCCCCCC-HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 34455555555431 22 23333333 45555677887766655544 43333221233455556677766544
Q ss_pred HHHHHHHcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcH---HHHHHHHHHHHhcCChhHHHHHHH
Q 010292 282 EIYQMMKAGPVMPD---TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF---PLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 282 ~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
.+ .+.|..++ ..-++ .+...+..|+.+-+..+++. |..++. .-+.+.+...+..|+.+ +.+
T Consensus 80 ~L----l~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~ 146 (285)
T 3kea_A 80 IL----LFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVS 146 (285)
T ss_dssp HH----HHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHH
T ss_pred HH----HHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHH
Confidence 44 44565543 22223 34444567887665555544 333322 12123444555667655 334
Q ss_pred HHHhCCCCCccc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010292 356 LMRLIPEKEYRP-WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 434 (513)
.+.+........ ... ..+...+..|+.+-+.-+++............ .+..+...+..|+. ++.+.+.+.|.
T Consensus 147 ~Ll~~g~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g--~t~~L~~A~~~~~~----~~v~~Ll~~ga 219 (285)
T 3kea_A 147 YFLSEIPSTFDLAILL-SCIHITIKNGHVDMMILLLDYMTSTNTNNSLL--FIPDIKLAIDNKDI----EMLQALFKYDI 219 (285)
T ss_dssp HHHTTSCTTCCCSTHH-HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCB--CCTTHHHHHHHTCH----HHHHHHTTSCB
T ss_pred HHHhCCCccccccCCc-cHHHHHHHcChHHHHHHHHHcCCCCCcccCCC--CChHHHHHHHcCCH----HHHHHHHHcCC
Confidence 443333222221 212 35666678888887777776644422211111 12223333445664 45555667788
Q ss_pred cccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010292 435 RLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
.++.... .-+..|+.+-+.-+++.
T Consensus 220 d~~~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 220 NIYSANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp CSTTTTG-----GGGTTTCHHHHHHHHHH
T ss_pred CCCCCCh-----hhhhcCCHHHHHHHHHc
Confidence 7776542 11345665555444443
No 288
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=53.60 E-value=75 Score=26.61 Aligned_cols=32 Identities=6% Similarity=-0.011 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010292 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
.+.+..+++.+.+.|...|.......+....+
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~ 123 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMIN 123 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34556677777777777666665666665554
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.24 E-value=1.3e+02 Score=26.81 Aligned_cols=78 Identities=10% Similarity=0.035 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcCCcccHhhHHHH
Q 010292 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC---NAVDKLANFVKRAESAGWRLCRSLYHSK 444 (513)
Q Consensus 368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~l 444 (513)
.....+...|.+.|++.+|...|- . +. ..+...+..++.-+... |...++--++. -.
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i--~--~~-~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~---------------Ra 194 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFM--L--GT-HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS---------------RL 194 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--T--SC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHH--h--CC-CccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------HH
Confidence 335567888888888888887662 1 11 11234455554444333 33333211111 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 010292 445 MVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~ 465 (513)
+--|.-.|+...|..+|+...
T Consensus 195 VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 223455778888888887664
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.70 E-value=96 Score=25.21 Aligned_cols=153 Identities=9% Similarity=-0.080 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+...-...+..+++.|..+. ...+..+... ++...-...+.++.+.+.. ++...+.++.. .+|...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERA-VEPLIKALKD--EDAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTTC--SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccH-HHHHHHHHcC--CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHH
Confidence 44444455555555555322 2222222222 2444555555666666653 33444444442 366666677777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
++.+.|+.+.. ..+.++.+ .++..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++.+.+.. +
T Consensus 104 aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~ 174 (211)
T 3ltm_A 104 ALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-R 174 (211)
T ss_dssp HHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-H
T ss_pred HHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-h
Confidence 77777765433 33334443 366666667777777776643 4444444443 25666666777777777653 3
Q ss_pred HHHHHHHHHh
Q 010292 315 MEKIYELVKH 324 (513)
Q Consensus 315 a~~~~~~~~~ 324 (513)
+...+..+.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.15 E-value=2.1e+02 Score=28.66 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=25.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010292 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 203 (513)
.+|-.|.|+|++++|.++.++....--.-...+-..+..|+..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 4566778999999999998776542111224666666777643
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.65 E-value=22 Score=29.78 Aligned_cols=55 Identities=5% Similarity=-0.008 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 010292 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 437 (513)
.+.+.++|..|..++........|......+...|++.+|.++|..-.+.+-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4677788888888887777777888888888899999999999998888777773
No 293
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=48.19 E-value=60 Score=21.80 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010292 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (513)
.+.++++.+.+.+...+..|..-.+..+.+.
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3444444444333333333333333333333
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.13 E-value=15 Score=30.82 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=6.4
Q ss_pred HhcCcHHHHHHHHH
Q 010292 414 FRCNAVDKLANFVK 427 (513)
Q Consensus 414 ~~~~~~~~a~~~~~ 427 (513)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 34455544444444
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.34 E-value=90 Score=23.93 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=38.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.|.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345667777654 23345555555666667888888887776555666655566666666643
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.00 E-value=59 Score=27.05 Aligned_cols=29 Identities=0% Similarity=-0.142 Sum_probs=19.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPN 260 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 260 (513)
.+...++.|+.+.+..+++.+.+.|..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 44555677888877777777766665544
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.99 E-value=1.5e+02 Score=26.22 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 010292 229 YNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
...+|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4566777777788888887777764
No 298
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=46.08 E-value=35 Score=29.81 Aligned_cols=20 Identities=5% Similarity=-0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 010292 230 NTLISVFGRLLLVDHMEAAF 249 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~ 249 (513)
.+.+...+..|+.+...++.
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~ 35 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSK 35 (285)
T ss_dssp --------------------
T ss_pred HHHHHHHhhcCCCCCcccCC
Confidence 44555555566655555543
No 299
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.79 E-value=26 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=10.3
Q ss_pred HHHhcccCCHHHHHHHHHH
Q 010292 163 IKFAGRINNVDLAADLFAE 181 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~ 181 (513)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444555666665555554
No 300
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.94 E-value=1.1e+02 Score=23.73 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=39.3
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.|.+.|++++. --..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345667776443 34456666666666778888888888776666666655566667766643
No 301
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.22 E-value=2.1e+02 Score=26.98 Aligned_cols=38 Identities=11% Similarity=-0.147 Sum_probs=23.8
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010292 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
+.++.+.|+.++.+|.+.|..|....-..+..+.-..|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34577777777777777776665555555555554444
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.18 E-value=61 Score=29.37 Aligned_cols=96 Identities=17% Similarity=0.046 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010292 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|..-++.| ...+..|+.+.+..+++.-..-+..+..-++. +...+..|+.+-+ +.+.+. |..++...-.+.+.
T Consensus 17 d~~g~t~L-~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~-g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 17 DDENMEKI-HVAARKGQTDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVDTA----KYLASV-GEVHSLWHGQKPIH 89 (364)
T ss_dssp CHHHHHHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHHHH----HHHHHH-CCCCCCBTTBCHHH
T ss_pred CCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHHHH----HHHHHC-CCCccccCCCCHHH
Confidence 44433333 33355666665555554311111112222223 3334445555333 333332 33333211222344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC
Q 010292 235 VFGRLLLVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~ 257 (513)
..+..|+.+-+..+++.-...|.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHhccccCC
Confidence 44556676666666665444343
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.13 E-value=91 Score=23.91 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=42.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|..--|+.+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4466677766554 3345555556666778888888888777666777777777777777643
No 304
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.05 E-value=36 Score=21.99 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010292 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (513)
++.+++.+++..-+++++-.+.+..+.| ..+..+|---++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3444445555445555555555555555 34444454444444443
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.01 E-value=67 Score=25.32 Aligned_cols=57 Identities=12% Similarity=0.006 Sum_probs=26.1
Q ss_pred HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCC
Q 010292 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~ 311 (513)
+.|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|.---|+.+...|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444332 233344444444444555555555544 434444444444555555553
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.81 E-value=37 Score=28.24 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCC
Q 010292 479 MYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
.+....+.|+.+.+..+++...+.|
T Consensus 213 ~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 213 ALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHcCcHHHHHHHHHhhhccC
Confidence 3444556666666655555544443
No 307
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=40.59 E-value=2e+02 Score=25.80 Aligned_cols=135 Identities=9% Similarity=0.021 Sum_probs=80.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL----FRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~g~~p~~~~~~~li 233 (513)
+|.++..=|.+.+++++|++++-.-- ..+.+.|+...|-++ .+...+. ++++|.....-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 44555666778888888888765532 234445555444333 3444443 6777777777777
Q ss_pred HHHHhcCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010292 234 SVFGRLLLVD-HMEAAFQEIKD----SN--LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 234 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
..+.....-+ .=..+.+++.+ .| ..-|......+...|.+.+++.+|..-| +. |-.++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHH
Confidence 7766555322 11233344432 22 3346777788889999999999998877 22 3334446776666555
Q ss_pred HhcCC
Q 010292 307 AHSGN 311 (513)
Q Consensus 307 ~~~g~ 311 (513)
...+.
T Consensus 178 ~~~~~ 182 (336)
T 3lpz_A 178 YKQDE 182 (336)
T ss_dssp HHTSC
T ss_pred HHhcC
Confidence 55443
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.46 E-value=47 Score=26.74 Aligned_cols=15 Identities=33% Similarity=0.142 Sum_probs=7.6
Q ss_pred HHHccCHHHHHHHHH
Q 010292 271 YMTAWMWGKVEEIYQ 285 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~ 285 (513)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344555555555443
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.29 E-value=1.3e+02 Score=23.39 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHh
Q 010292 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL--SDKCQSLFRDLKKE 219 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~ 219 (513)
.+.++.-|...|+.++|...++++.........+...+..++-+.++ .+.+..++..+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~ 74 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 34566666667777777777776643211123333444444443222 34455566655543
No 310
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=40.25 E-value=43 Score=21.61 Aligned_cols=47 Identities=2% Similarity=-0.043 Sum_probs=31.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC
Q 010292 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG 204 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 204 (513)
.++.+++.+++..-+++++..+++..+.|.-+...|---++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777666666666666665543
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.96 E-value=1.3e+02 Score=23.36 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCC
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLANFVKRAESAGW 434 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~ 434 (513)
.++.-|...|+.++|.+.++++... ......+..++..++-+.+ ..+.+..++..+...++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 5788888888888888888887431 1112233444555555532 24456667776665554
No 312
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.95 E-value=59 Score=29.04 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=11.1
Q ss_pred HHHHhcccCCHHHHHHHHHH
Q 010292 162 GIKFAGRINNVDLAADLFAE 181 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~ 181 (513)
.+...++.|+++.+..+++.
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444566776666555543
No 313
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.51 E-value=99 Score=27.89 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=24.5
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcccHhh--HHHHHHHHHhcCCHHHHHHHHHH
Q 010292 413 YFRCNAVDKLANFVKRAESAGWRLCRSL--YHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
.+..|+.+-+ +.+.+.|..++... -.+-+...++.|+.+-+..+++.
T Consensus 218 A~~~g~~~~v----~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDVA----MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 4456666543 33444565544221 11234445567777777777664
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.47 E-value=21 Score=30.59 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 010292 446 VMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~ 465 (513)
...++.|+.+-+..+++.-.
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCC
Confidence 33445566655555555443
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.96 E-value=71 Score=28.88 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCC
Q 010292 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~ 257 (513)
-...++.-|...|+.++|.+.++++... ... ...++..+..++-+.. ..+.+..++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASP-SLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCG-GGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 4567888888888998888888877521 111 1122233333332211 23445566666666554
No 316
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=38.63 E-value=4.3e+02 Score=29.04 Aligned_cols=164 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC------------------------------------Ch
Q 010292 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG------------------------------------LS 206 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g------------------------------------~~ 206 (513)
+..+.+. +.+++.++|+++.+..+.....+-.+++.+-... ..
T Consensus 1115 ~~~~~k~-~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193 (1354)
T 3lxu_X 1115 CSQIVKC-ELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSAL 1193 (1354)
T ss_dssp HHHHTTS-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHHHHHHHH
T ss_pred HHHHhhc-ChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhhhHHHHH
Q ss_pred HHHHHHHHHHHHh---------CCCCCCHHHH------------HHHHHHHHh---------------cCChhHHHHHHH
Q 010292 207 DKCQSLFRDLKKE---------ANISPSIVTY------------NTLISVFGR---------------LLLVDHMEAAFQ 250 (513)
Q Consensus 207 ~~A~~~~~~m~~~---------~g~~p~~~~~------------~~li~~~~~---------------~g~~~~A~~~~~ 250 (513)
++.+++-++..+. +|.+-|...= +.|++++++ ....+...+.|.
T Consensus 1194 ~~ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~ 1273 (1354)
T 3lxu_X 1194 ERIVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYT 1273 (1354)
T ss_dssp HHHHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc
Q 010292 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330 (513)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (513)
++.+.=-.-|....-..+.--.+.|++..|++++.++.+.. |+...|..++..+...| ++....+.+.+.-...++.
T Consensus 1274 el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1274 EIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINRMMITAFPSS 1350 (1354)
T ss_dssp HHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHSCSS
T ss_pred HHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHhhhhhhCccc
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.70 E-value=1.7e+02 Score=24.33 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhc
Q 010292 383 LEEMEKSINDAFEH 396 (513)
Q Consensus 383 ~~~a~~~~~~~~~~ 396 (513)
++-|+.+|+.+.+.
T Consensus 88 LESAl~v~~~I~~e 101 (235)
T 3bu8_A 88 LESAINVLEMIKTE 101 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666655554
No 318
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.55 E-value=21 Score=29.97 Aligned_cols=17 Identities=12% Similarity=-0.111 Sum_probs=8.8
Q ss_pred HhcCcHHHHHHHHHHHH
Q 010292 414 FRCNAVDKLANFVKRAE 430 (513)
Q Consensus 414 ~~~~~~~~a~~~~~~m~ 430 (513)
+..|+.+.+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555544
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.48 E-value=1.7e+02 Score=23.93 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=13.3
Q ss_pred HHHHHHHccCHHHHHHHHHH
Q 010292 267 LIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~ 286 (513)
.+...++.|+.+.+..+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35556667777777777665
No 320
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=37.45 E-value=1.6e+02 Score=24.94 Aligned_cols=187 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010292 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
+...+..|+.+.+..+++. ...+......-.+.+...+..|+.+-++..++.-......+...++ -+...+..|+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t---~L~~A~~~~~ 81 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---PLFNACVSGS 81 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC---HHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHcCC
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHH--HHHHHHHhcCCHHHHHHH
Q 010292 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH--SKMVMYASQRRVEEMESV 460 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~ 460 (513)
.+ +++.+++.+..+....--...+...+..|+.+ +++.+.+.|..++..... +.+...+..|+.+-+..+
T Consensus 82 ~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (261)
T 2xai_A 82 WD----CVNLLLQHGASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153 (261)
T ss_dssp HH----HHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCC
Q 010292 461 LKEMENYKIDCSKKTFW-IMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510 (513)
Q Consensus 461 ~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 510 (513)
++. |..++..... +.+...++.|+. ++.+.+.+.|..++...
T Consensus 154 l~~----g~~~~~~~~g~t~Lh~A~~~~~~----~~v~~Ll~~gad~~~~d 196 (261)
T 2xai_A 154 LES----GADVNQGKGQDSPLHAVARTASE----ELACLLMDFGADTQAKN 196 (261)
T ss_dssp HHH----TCCTTCCBTTBCHHHHHHHHTCH----HHHHHHHHTTCCTTCCC
T ss_pred HHc----CCCCCCCCCCCChHHHHHHcCCH----HHHHHHHHcCCCCCCcC
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.94 E-value=93 Score=20.78 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=40.3
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 285 QMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34666787776544 45556665554 4566788888887776556666666667777766643
No 322
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.36 E-value=1.3e+02 Score=22.45 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCC
Q 010292 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLANFVKRAESAGW 434 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~ 434 (513)
.++.-|...|+.++|.+.++++... ......+..++..++-+.+ ..+.+..++..+...|+
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4677777777788887777776421 1111223344444444443 23455566666655543
No 323
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.30 E-value=95 Score=26.17 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=10.7
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 010292 198 GAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~ 218 (513)
...++.|+.+.+..+++.+..
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~ 27 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRW 27 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334455555555555555544
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=36.11 E-value=2.3e+02 Score=26.85 Aligned_cols=134 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010292 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 178 ~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 256 (513)
.+.-..+.|+| -...|-.-...+...|++++|.++--.-.+ |+-.+..|.+.+-..=...|+..--..+|.-+.+.|
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010292 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 257 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
- .+..---.++..-...|+.+-.++++.+ |.-+++.=+.-+.+..+...|..+|.+.
T Consensus 426 ~-Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 426 Q-LNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp C-CCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred c-cchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 325
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=35.81 E-value=1.4e+02 Score=23.32 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 010292 280 VEEIYQMM 287 (513)
Q Consensus 280 a~~~~~~m 287 (513)
+.++|+.+
T Consensus 142 ~~~~f~~~ 149 (183)
T 1s6c_A 142 VDVFFQKM 149 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33344433
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.70 E-value=1e+02 Score=23.65 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010292 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3455667766543 233444444445 5567777777777665555555544555565555
No 327
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.12 E-value=1.9e+02 Score=23.73 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010292 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
+|.+.|+-.+.+|++.| .|....-..++.+
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~A 57 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIG 57 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 45555555555555555 4433333333333
No 328
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.76 E-value=3.5e+02 Score=26.81 Aligned_cols=113 Identities=6% Similarity=-0.011 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010292 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY----AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
+.+.|..++....+.+ ..+......+-..+ ...+...++...+....... .+.....-.+....+.|+++.+.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765432 22332222222222 22332445555555543322 23222333334444567666544
Q ss_pred HHHHHHHhCCCCC--cccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 352 KIEALMRLIPEKE--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 352 ~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
. .+..+.... ...|.| =+..++...|+.++|..+|.++..
T Consensus 306 ~---~~~~l~~~~~~~~r~~Y-W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 T---WLARLPMEAKEKDEWRY-WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H---HHHHSCTTGGGSHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H---HHHHccccccccHhHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4 444444432 122222 255666677888888887777654
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.74 E-value=1.9e+02 Score=23.69 Aligned_cols=62 Identities=10% Similarity=-0.010 Sum_probs=40.5
Q ss_pred HHHHHH---HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhccCCC
Q 010292 267 LIAGYM---TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----LPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 267 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~ 329 (513)
+|+++. +..+.+.|+-++-+|.+.| .|.-..-..++-+.-..|. +..|...++.....|.+-
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 444444 4568888888888998888 7666666667777666664 334555555556666543
No 330
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.74 E-value=1.4e+02 Score=22.29 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHh
Q 010292 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL--SDKCQSLFRDLKKE 219 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~ 219 (513)
...++.-|...|+.++|...++++.........+...+..++-+.+. .+.+..++..+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 34566666677777777777777642211123333444444444322 34556666666543
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.06 E-value=90 Score=23.95 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.---|+.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 44566777766543 33445555555 678888998888877677777777777777777643
No 332
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.02 E-value=1.9e+02 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=10.1
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 010292 200 YMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~ 218 (513)
.++.|+.+....+++.+..
T Consensus 12 A~~~g~~~~v~~ll~~l~~ 30 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLT 30 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 3445555555555555544
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.84 E-value=39 Score=28.20 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=7.8
Q ss_pred HhcCCHhHHHHHHHHHH
Q 010292 484 ATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 484 ~~~g~~~~A~~~~~~m~ 500 (513)
...|+.+.+.++.+.++
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444444444444443
No 334
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.76 E-value=1.9e+02 Score=23.55 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=9.5
Q ss_pred CChhHHHHHHHHHHHCCCCC
Q 010292 240 LLVDHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p 259 (513)
+|.+.|+-.+.+|++.|-.|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444555555554444433
No 335
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.64 E-value=92 Score=23.53 Aligned_cols=60 Identities=5% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 287 MKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44455554432 223344444443 4445666666665554444444444455555555543
No 336
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.55 E-value=2.2e+02 Score=24.05 Aligned_cols=91 Identities=9% Similarity=-0.073 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCc---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEH--KTSVT---TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 447 (513)
-++.+....++++|.+++++..+. +.... ...+....+..-.....-.-+..+.+++.. ..+...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 577777788888888877765542 11110 001112222222222223333444444422 2334444455666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010292 448 YASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~ 466 (513)
+.+.|+-++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6777777777777766554
No 337
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.08 E-value=55 Score=28.12 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=11.3
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 010292 236 FGRLLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g 256 (513)
.++.|+.+.+..+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 345556665555555555444
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.67 E-value=2e+02 Score=30.40 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcC
Q 010292 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSG 310 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g 310 (513)
=|..++..+-+.+.++.+.++-+...+.--.-| ...|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 578899999999999999988887765311112 346777788777655
No 339
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.59 E-value=2e+02 Score=23.23 Aligned_cols=81 Identities=5% Similarity=-0.142 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010292 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
+|...-...+.++.+.++.+.. ..+.++.. .+|..+-...+.++.+.|+.+. ...+.++.. .++...-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHH
Confidence 4555555555556655553332 22222222 2455555555556665555332 233333332 24555555555
Q ss_pred HHHHhcCCh
Q 010292 304 RGYAHSGNL 312 (513)
Q Consensus 304 ~~~~~~g~~ 312 (513)
.++.+.|+.
T Consensus 134 ~aL~~~~~~ 142 (211)
T 3ltm_A 134 FALGEIGDE 142 (211)
T ss_dssp HHHHHHCCG
T ss_pred HHHHHcCCH
Confidence 555555543
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.46 E-value=2.8e+02 Score=24.93 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=20.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010292 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
...++.=|...|+.++|.+.++++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 56677778888888888888887754
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.46 E-value=4.6e+02 Score=27.48 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 194 NALLGAYMYNGL---SDKCQSLFRDLKKEA---NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 194 ~~li~~~~~~g~---~~~A~~~~~~m~~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
..++...|+.|. .++|.+.|+...... .+.||... .+...-.+.|+.++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345666677665 456777777765421 14555432 2222233456666666666666653 344445667
Q ss_pred HHHHHHccCHHHHHHHHHHHHcC
Q 010292 268 IAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+.+++...+.+...++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77777777777777777766553
No 342
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.25 E-value=1.3e+02 Score=21.20 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010292 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
|.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4444555555555555555555555444443
No 343
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.04 E-value=2.1e+02 Score=23.37 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=32.7
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhccC
Q 010292 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----LPRMEKIYELVKHHVD 327 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 327 (513)
+..+.+.|+-++-+|++.|-.|.-..-..++-+.-..|. +..|...++.....|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 345777777777777777766666666666666555553 2334445555555444
No 344
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=31.89 E-value=5e+02 Score=27.77 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHH
Q 010292 136 LALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFR 214 (513)
Q Consensus 136 ~a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (513)
.+.+++..+.+.....+..+ ...|..|+.. .+.=+.++-.++++++.. ....-+.++++....|-.+...-+.+
T Consensus 289 ~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~-lR~~~~e~L~~l~~~~~~----~~~~r~~~lDal~~aGT~~a~~~i~~ 363 (1056)
T 1lsh_A 289 EIHTVLKHLVENNQLSVHEDAPAKFLRLTAF-LRNVDAGVLQSIWHKLHQ----QKDYRRWILDAVPAMATSEALLFLKR 363 (1056)
T ss_dssp HHHHHHHHHHHHCSSSCCTTHHHHHHHHHHH-HTTSCHHHHHHHHHHHTT----SHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCcchHHHHHHHHHH-HhcCCHHHHHHHHHHHhc----cHHHHHHHHHHhHhcCCHHHHHHHHH
Confidence 34455555544432222222 2333444443 334455555566665543 12233346666666666544444444
Q ss_pred HHH
Q 010292 215 DLK 217 (513)
Q Consensus 215 ~m~ 217 (513)
.+.
T Consensus 364 ~i~ 366 (1056)
T 1lsh_A 364 TLA 366 (1056)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 345
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.82 E-value=2.8e+02 Score=24.74 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010292 277 WGKVEEIYQMMKAGPVMPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
.....++-..|-.-.++|. .-+....+..+.+.+++..|..+-+++.+.+..+
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 3445555555555555554 3455666778889999999999999999876533
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.65 E-value=1.1e+02 Score=23.56 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=35.4
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 285 QMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455667665542 233444444444 5556777777777765555655555555666666533
No 347
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.19 E-value=73 Score=24.20 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.3
Q ss_pred hcCCHh
Q 010292 485 TCGQRR 490 (513)
Q Consensus 485 ~~g~~~ 490 (513)
..|+.+
T Consensus 142 ~~~~~~ 147 (156)
T 1bd8_A 142 QRGAQD 147 (156)
T ss_dssp HSCCHH
T ss_pred HcCcHH
Confidence 334433
No 348
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=31.04 E-value=3.3e+02 Score=25.30 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010292 194 NALLGAYMYNGL---SDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 194 ~~li~~~~~~g~---~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
..++...|..|+ .++|.+.|+......+- ......-..+...-.+. .++-..+++..... .+..--+.++.
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~--~~~~~~l~~~y~~s---~~~~ek~~ll~ 275 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFS---LSSTEKSQIEF 275 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS--HHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC--HHHHHHHHHHHhcC---CCHHHHHHHHH
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH---HHhccCCCcHHHHHHHHHHHHhc-C
Q 010292 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL---VKHHVDGKEFPLIRAMICAYSKC-S 345 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~-g 345 (513)
+++...+.+...++++......+.........+........-.+.|.+.+.. ........+......++...... .
T Consensus 276 aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~ 355 (419)
T 3rjo_A 276 ALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFS 355 (419)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCC
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcCC
Q ss_pred ChhHHHHHHHHHHhCCCCC
Q 010292 346 VTDRIKKIEALMRLIPEKE 364 (513)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~ 364 (513)
..++..++...+......+
T Consensus 356 t~~~l~e~~~Ff~~~~~~~ 374 (419)
T 3rjo_A 356 TRTRLEEVKGFFSSLKENG 374 (419)
T ss_dssp SHHHHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHHHHHHhCcccc
No 349
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.96 E-value=1.8e+02 Score=22.34 Aligned_cols=58 Identities=9% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 182 m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
+.+.|.+....=..++..+...+..-.|.++++.+.++ +-..+..|.---|+.+...|
T Consensus 18 l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 33444443334444444444444455555555555543 33334444333444444444
No 350
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.68 E-value=51 Score=20.82 Aligned_cols=22 Identities=14% Similarity=-0.044 Sum_probs=12.0
Q ss_pred ccCHHHHHHHHHHHHcCCCCCC
Q 010292 274 AWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
.|+.+.|++.+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4555666666555555444443
No 351
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.49 E-value=1.1e+02 Score=23.70 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292 250 QEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
+.|.+.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--|+.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446667777665433 3445555555 6677888888888877667777777777777777754
No 352
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.33 E-value=3.8e+02 Score=25.84 Aligned_cols=63 Identities=10% Similarity=0.010 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH--HHH-HHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010292 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV--RIM-RCIVSSYFRCNAVDKLANFVKRAESA 432 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~li~~~~~~~~~~~a~~~~~~m~~~ 432 (513)
.+.++..|...+.++.|..+..+..-.....++. ..| --+...+.-.+++.+|.+.+......
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4478899999999999999988764321112221 122 22355666788999999888887643
No 353
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.14 E-value=2.3e+02 Score=23.35 Aligned_cols=54 Identities=9% Similarity=-0.115 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhccC
Q 010292 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----LPRMEKIYELVKHHVD 327 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 327 (513)
..+.+.|+-++-+|++.|-.|.-..-..++-+.-..|. +..|...++.....|.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 45666777777777776666655555555555554443 2234444444444444
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.82 E-value=1.9e+02 Score=22.78 Aligned_cols=53 Identities=2% Similarity=-0.070 Sum_probs=35.7
Q ss_pred HHccCHHHHHHHHHHHHcCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 010292 272 MTAWMWGKVEEIYQMMKAGPVMP--DTNTYLLLLR-G-----YAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~-~-----~~~~g~~~~a~~~~~~~~~ 324 (513)
...|++-+|.+++++.=...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888888888775543344 4566777777 2 2457888888888877654
No 355
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.47 E-value=5.1e+02 Score=27.11 Aligned_cols=160 Identities=9% Similarity=-0.066 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC----CCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010292 335 RAMICAYSKCSVTDRIKKIEALMRLIPE----KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410 (513)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 410 (513)
..++...|..|+.+-...+.+.|..... ..+.+.....+...-.+.|..++-..+++...... +..--..++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~----~~~ek~~ll 765 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ----LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC----SHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC----CHHHHHHHH
Confidence 4566777888877766666666654321 12333332233344445566665555555555432 122234577
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcC-CcccHhhHHHHHHHHHh-cCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHh
Q 010292 411 SSYFRCNAVDKLANFVKRAESAG-WRLCRSLYHSKMVMYAS-QRRVEEMESVLKEMEN---YKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~ 485 (513)
.+++...+.+...++++...... +++ ..... ++.+... ....+.|.+.+.+=-+ ..+..+...+..++.+...
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRK-QDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 77777888887777777665433 332 23333 3333332 2223445555443111 1122233345666666655
Q ss_pred cCCHhHHHHHHHHHH
Q 010292 486 CGQRRKVNQVLGLMC 500 (513)
Q Consensus 486 ~g~~~~A~~~~~~m~ 500 (513)
.-.-++-.+-++...
T Consensus 844 ~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 844 RFSSEFELQQLEQFK 858 (909)
T ss_dssp TCCSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH
Confidence 444444444444443
No 356
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=29.02 E-value=1.7e+02 Score=24.73 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010292 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (513)
++...+|+.+...+.....++.-+..++...+.. ..+..+|..+-....=.-+..-|..++..+......+....+
T Consensus 91 ~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~ 170 (256)
T 2jul_A 91 KELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWA 170 (256)
T ss_dssp HHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc----c-----------CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010292 249 FQEIKDSNLSPNVFTYNYLIAGYMTA----W-----------MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~~~----g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
|+.+-..| -...++.-+...+... | .-+.+..+|+.+-..| -...+|.-++..+.+...+-
T Consensus 171 F~~~D~d~--dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~ 246 (256)
T 2jul_A 171 FNLYDINK--DGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIM 246 (256)
T ss_dssp HHHTCCSS--SSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHH
T ss_pred HHHhCCCC--CCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHH
Q ss_pred HHHHHHHHHH
Q 010292 314 RMEKIYELVK 323 (513)
Q Consensus 314 ~a~~~~~~~~ 323 (513)
++...|+.++
T Consensus 247 ~~l~~~d~~~ 256 (256)
T 2jul_A 247 NSMQLFENVI 256 (256)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHhhcccC
No 357
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.02 E-value=1.7e+02 Score=22.97 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=48.1
Q ss_pred HHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHhcCChh
Q 010292 278 GKVEEIYQM-MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH--VDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 278 ~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
+.+.+-+.+ +.+.|++.+. --..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444444443 5567888765 4456677777777888899999999887 66667666555667777777443
No 358
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.40 E-value=1.4e+02 Score=25.12 Aligned_cols=55 Identities=4% Similarity=-0.089 Sum_probs=30.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHc---cCHHHHHHHHHHH
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNV-------FTYNYLIAGYMTA---WMWGKVEEIYQMM 287 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~---g~~~~a~~~~~~m 287 (513)
.+...++.|+.+.+..+++.+.+.|..++. .-++.|..+ +.. |+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcC
Confidence 344556677777777777777666654432 223333333 333 6665555555543
No 359
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.18 E-value=2.6e+02 Score=23.23 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHhccC-CC--HhH-----HHHHHHHHHHcCChHHHHHHHHHHHH
Q 010292 171 NVDLAADLFAEAANKHL-KT--IGT-----YNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~-~~--~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
-++.|+.+|+.+.+.-. ++ ... --..+..|.+.|.+++|.++|++...
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 35777888887776432 11 111 11234457777888888888877764
No 360
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.68 E-value=2.3e+02 Score=22.53 Aligned_cols=122 Identities=10% Similarity=-0.115 Sum_probs=66.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...-...+.++.+.|.. ++...+.++.. .++...-...+.++.+.++.+....+ .++.. .++..+-...+
T Consensus 58 ~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAVALGQIGDERAVEPL-IKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHH
Confidence 333444444555555554 33344444432 35666667777777777765433333 33333 35666666667
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.++.+.|+.+ +...+..+.. .++...-...+.++.+.|.. ++...+..+.+
T Consensus 129 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 129 FALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 7777766543 4444444443 24666666777777777653 34444444443
No 361
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.44 E-value=2.3e+02 Score=22.47 Aligned_cols=134 Identities=10% Similarity=-0.019 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCcccHhh---HHHHHH
Q 010292 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFR-CNAVDKLANFVKRAESAGWRLCRSL---YHSKMV 446 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~ 446 (513)
.+...+..|+.+.-.++.+-+++.|..+. +..-.+.|..++.. ..+.....++.+.+.+.|..++... .++.+.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh 120 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTG
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHH
Confidence 45555566666655556666666665443 11112333333222 2334445566677777776665432 112232
Q ss_pred HHHhcCCH-HHHHHHHHHHHh-CCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010292 447 MYASQRRV-EEMESVLKEMEN-YKIDCSKKTFW--IMYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 447 ~~~~~g~~-~~A~~~~~~m~~-~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
..+..+.. ..-..+++-+.+ .|..++..... +-+....+.|+.+-+.-+.+.+.+.+++.
T Consensus 121 ~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 23333322 344556666666 67666554433 45555566666655555555555555543
No 362
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.29 E-value=94 Score=21.88 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010292 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 209 (513)
.+.++|.++++.++.+|. ..|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~---~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS---QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT---THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcCh---HHHHHHHHHHHHcCcHHHH
Confidence 355666666666666533 3566666666554554444
No 363
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.15 E-value=1.9e+02 Score=21.32 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010292 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
+|+.+....+.|++...-.-|..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666655554444445555677788888888776655
No 364
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.12 E-value=1.6e+02 Score=24.08 Aligned_cols=52 Identities=13% Similarity=-0.055 Sum_probs=27.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 010292 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
.+...++.|+++....+++.-...--.+|..-++.| ...+..|+.+-+..++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll 60 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVEFLL 60 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHHHHHH
Confidence 456677788888888887764321112233333333 3345566655444333
No 365
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.49 E-value=1.8e+02 Score=21.79 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010292 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344555555555555444444444444444444443
No 366
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.45 E-value=2.5e+02 Score=22.46 Aligned_cols=30 Identities=17% Similarity=-0.207 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010292 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
...|+.+...|...|+.++|+..+..--..
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 356667777788888999998888765543
No 367
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.18 E-value=1.6e+02 Score=20.28 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=13.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010292 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
...++|..+++.+..+ ....|..++.++.+.+
T Consensus 50 t~~~kar~Lld~l~~k-----G~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKK-----DNDSYVSFYNALLHEG 81 (94)
T ss_dssp SHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHcC
Confidence 3444444444444322 2334444444444443
No 368
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.79 E-value=71 Score=21.79 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010292 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
.++|...|.+|+.+.++.|+. +|...|...+..
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~D 48 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccC
Confidence 456667777776666655553 555555554443
No 369
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.31 E-value=2.9e+02 Score=22.82 Aligned_cols=38 Identities=16% Similarity=0.034 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010292 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
+-+|.+.|+-.+.+|++.|-.|....-..++.+.-.-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34677777777777777776655555555555544444
No 370
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.68 E-value=2.5e+02 Score=21.99 Aligned_cols=14 Identities=0% Similarity=-0.002 Sum_probs=6.8
Q ss_pred cCCHhHHHHHHHHH
Q 010292 486 CGQRRKVNQVLGLM 499 (513)
Q Consensus 486 ~g~~~~A~~~~~~m 499 (513)
.||...|..++.+.
T Consensus 88 rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 88 FEDDDGMRSLFRTS 101 (161)
T ss_dssp HCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 44555555544444
No 371
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.53 E-value=1e+02 Score=23.03 Aligned_cols=48 Identities=2% Similarity=0.081 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010292 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 344444455555566666666666554455555555566666666443
No 372
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=24.01 E-value=4e+02 Score=27.34 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010292 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC-LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414 (513)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (513)
.++...|..|+.+-.. +.+.|... ..+.+.....+.....+.|. ++. +++..... ++..--..++.+++
T Consensus 591 ~~~~~a~~~~~~~~~~-a~~~f~~~--~~i~~~lr~~v~~~~~~~g~~~~~---l~~~~~~~----~~~~~~~~~l~al~ 660 (780)
T 1z5h_A 591 RVSRLYVMVDESYAEE-MSKLFKDF--DSAEPEMRSSIATAYALVTGDLKG---LLEKFRSV----DRDEDRVRIISAFG 660 (780)
T ss_dssp HHHHHHHHHCHHHHHH-HHTTGGGG--GGSCHHHHHHHHHHHHHHTCCHHH---HHHHHHSC----CSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHhc--CCCCHHHHHHHHHHHHHcCcHHHH---HHHHHhcC----CCHHHHHHHHHHhc
Confidence 4456666766544444 55555443 22333322222222233333 333 33332221 12222456677777
Q ss_pred hcCcHHHHHHHHHHHHh
Q 010292 415 RCNAVDKLANFVKRAES 431 (513)
Q Consensus 415 ~~~~~~~a~~~~~~m~~ 431 (513)
...+.+...++++....
T Consensus 661 ~~~~~~~~~~~l~~~~~ 677 (780)
T 1z5h_A 661 KLKSNTDLSTVYGMVEK 677 (780)
T ss_dssp TCCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhc
Confidence 77888777777777765
No 373
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.99 E-value=1.9e+02 Score=20.26 Aligned_cols=32 Identities=6% Similarity=0.143 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010292 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
..++|.++++.+...|- ..|..++.++...|.
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCc
Confidence 34455555555544431 134444444444343
No 374
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.93 E-value=2.9e+02 Score=22.42 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=18.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010292 479 MYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
.+...+..|+.+.+.++++.+.+.|-.+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 4455556677777777777777776654
No 375
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.57 E-value=2.8e+02 Score=22.14 Aligned_cols=27 Identities=11% Similarity=-0.219 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010292 262 FTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
.-|+.+...|.+.|+.++|++.|..--
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 456667778888999999999886543
No 376
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=23.36 E-value=2e+02 Score=21.04 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCh
Q 010292 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
..|..-+++..+. .+|......++..+-.. ++.++++.+...+ .|+ ++.++...++...+.|-+
T Consensus 5 ~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 5 ARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp HHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCC
Confidence 3444444444332 23444444444443332 3344444433322 333 233444444444444443
No 377
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.82 E-value=93 Score=23.67 Aligned_cols=47 Identities=6% Similarity=0.150 Sum_probs=24.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010292 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444444444555666666665555444555544455555555543
No 378
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=22.75 E-value=6.7e+02 Score=26.18 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010292 194 NALLGAYMYNGL---SDKCQSLFRDLKKEA---NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 194 ~~li~~~~~~g~---~~~A~~~~~~m~~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
..++...|+.|. .++|.+.|++..... .+.||.......... |.-++-..+++...+. .+..--+.+
T Consensus 684 ~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~----g~~~~~~~l~~~y~~~---~~~~ek~~l 756 (897)
T 2xdt_A 684 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----QSTEGWDFLYSKYQFS---LSSTEKSQI 756 (897)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT----TSHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec----CCHHHHHHHHHHHHcc---CCHHHHHHH
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH---HHhccCCCcHHHHHHHHHHHHhc
Q 010292 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL---VKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
+.+++...+.....++++.....+..........+........-.+.|.+.+.. -.......+......++......
T Consensus 757 l~aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~~i~~~~~~ 836 (897)
T 2xdt_A 757 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQ 836 (897)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHHHHHHTTTT
T ss_pred HHHhccCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhc
Q ss_pred CChhHHHHHHHHH
Q 010292 345 SVTDRIKKIEALM 357 (513)
Q Consensus 345 g~~~~a~~~~~~~ 357 (513)
-..+.-.+-++.|
T Consensus 837 ~~t~~~~~~~~~f 849 (897)
T 2xdt_A 837 FSTRTRLEEVKGF 849 (897)
T ss_dssp CCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
No 379
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.40 E-value=5.9e+02 Score=26.81 Aligned_cols=26 Identities=4% Similarity=-0.147 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010292 441 YHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
|..++..|-+.+-++.+.++-+...+
T Consensus 900 Y~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 900 YLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55666666666666666666655554
No 380
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.23 E-value=2.9e+02 Score=21.73 Aligned_cols=36 Identities=14% Similarity=-0.043 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHhHH
Q 010292 457 MESVLKEMENYKIDCSKKTFW--IMYYAYATCGQRRKV 492 (513)
Q Consensus 457 A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A 492 (513)
-.++++.+.+.|..++..... +-+....+.|+.+-+
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~ 194 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHH
Confidence 345555556666555433221 334444455555433
No 381
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=22.12 E-value=80 Score=20.80 Aligned_cols=32 Identities=13% Similarity=0.389 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010292 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
.++|.+.|.+|..+.++.|+ .+|...+..++.
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~ 45 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMIIN 45 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHcc
Confidence 46666677776666555544 355555555443
No 382
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.99 E-value=62 Score=20.39 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=16.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCCC
Q 010292 203 NGLSDKCQSLFRDLKKEANISPS 225 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~ 225 (513)
.-+++.|+..|.++...+.++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 45788888888888765455554
No 383
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.44 E-value=1.6e+02 Score=23.91 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=5.8
Q ss_pred cccCCHHHHHHHHH
Q 010292 167 GRINNVDLAADLFA 180 (513)
Q Consensus 167 ~~~g~~~~a~~~~~ 180 (513)
++.|+.+.+..+++
T Consensus 10 ~~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 10 CMENEFFKVQELLH 23 (228)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHh
Confidence 34444444444333
No 384
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.42 E-value=80 Score=23.99 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=5.2
Q ss_pred HccCHHHHHHHHH
Q 010292 273 TAWMWGKVEEIYQ 285 (513)
Q Consensus 273 ~~g~~~~a~~~~~ 285 (513)
+.|+.+.+..+++
T Consensus 11 ~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 11 ARGDVQEVRRLLH 23 (156)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 3344444444433
No 385
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.25 E-value=91 Score=24.87 Aligned_cols=59 Identities=10% Similarity=-0.107 Sum_probs=0.0
Q ss_pred CcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 010292 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493 (513)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 493 (513)
+.|....++.++..++...-+++++-++.+....| ..+..+|---++.+++...+..|.
T Consensus 107 v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~ral 165 (174)
T 2p22_A 107 AVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVRWH 165 (174)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHH
No 386
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.93 E-value=1.6e+02 Score=22.03 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010292 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
.++..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45555656666677788888877766566666666666666666643
No 387
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.89 E-value=3e+02 Score=26.84 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010292 191 GTYNALLGAYMYN--GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 191 ~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
..|..-|..+..+ ...+.......++..+..+. +..----++..|.+.|-.+.|.++++.+-..-+ -+...| .-|
T Consensus 480 sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~-Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL 556 (570)
T 3f3f_C 480 ELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFV-TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESI 556 (570)
T ss_dssp TTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred cchhHHHHHHhcCCccchhHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHH
Confidence 3444444444432 33445556666665543222 233455667777777777777777777665433 244445 555
Q ss_pred HHHHHccCHHHHH
Q 010292 269 AGYMTAWMWGKVE 281 (513)
Q Consensus 269 ~~~~~~g~~~~a~ 281 (513)
..|.|+|+++.+.
T Consensus 557 ~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 557 ANFSRAGKYELVK 569 (570)
T ss_dssp -------------
T ss_pred HHHHHcCChhhcc
Confidence 6677777766553
Done!