BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010293
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYI 386
AD+N K G++ LH AA++ ++ LL GA +E +SDG T +AI +R+ YI
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL----GYI 390
Query: 387 EAT 389
T
Sbjct: 391 SVT 393
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTR 381
A+ NL GHT LH+AAR ++ LL K A + T G T + + + +
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 15/77 (19%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
Y D +VV+G + HR +L+A S +F +LF +N SAV E +P V
Sbjct: 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLF----NNSRSAVVE----------LP-AAV 77
Query: 125 GYEAFNVILYYFYTGKL 141
++F IL + YTG+L
Sbjct: 78 QPQSFQQILSFCYTGRL 94
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYI 386
AD+N K++ G T LH AA+ ++ L+SKGA + + SDG+T + + R +
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 387 EATKQG 392
KQG
Sbjct: 154 LLEKQG 159
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
AD+N K++ G T LH AA+ ++ L+SKGA + SDG+T
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 105
Score = 36.2 bits (82), Expect = 0.046, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 314 NPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
N K+++ G AD+N ++ G T LH AA+ ++ L+SKGA + SDG+T
Sbjct: 16 NKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 72
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
+V K +L+ G AD N K++ G T LH+AA V+ LLS+GA + + SDG+T + +
Sbjct: 84 EVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL 142
Query: 376 CRRMTRRKDYIEATKQG 392
R + KQG
Sbjct: 143 AREHGNEEVVKLLEKQG 159
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
+V K +L+ G AD N K++ G T LH+AA V+ LLS+GA + SDG+T + +
Sbjct: 51 EVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL 109
Query: 376 CRRMTRRKDYIEATKQGQETN 396
++ QG + N
Sbjct: 110 AAENGHKEVVKLLLSQGADPN 130
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 314 NPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAV 373
N K++L G AD+N ++ G T LH+AA V+ LLS+GA + SDG+T +
Sbjct: 16 NKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 374 AICRRMTRRKDYIEATKQGQETN 396
+ ++ QG + N
Sbjct: 75 HLAAENGHKEVVKLLLSQGADPN 97
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
++ K +L+ G AD N K++ G T LH AA ++ LLSKGA + + SDG+T + +
Sbjct: 84 EIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
Query: 376 CRRMTRRKDYIEATKQG 392
R + KQG
Sbjct: 143 AREHGNEEIVKLLEKQG 159
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
++ K +L+ G AD N K++ G T LH AA ++ LLSKGA + SDG+T
Sbjct: 51 EIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT 105
Score = 35.0 bits (79), Expect = 0.092, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 314 NPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
N K++L G AD N ++ G T LH AA ++ LLSKGA + SDG+T
Sbjct: 16 NKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT 72
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
+V K +++ G AD+N K++ G T LH AA V+ L+SKGA + + SDG+T + +
Sbjct: 84 EVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142
Query: 376 CRRMTRRKDYIEATKQG 392
R + KQG
Sbjct: 143 AREHGNEEVVKLLEKQG 159
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
+V K +++ G AD+N K++ G T LH AA V+ L+SKGA + SDG+T
Sbjct: 51 EVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 105
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 314 NPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
N K+++ G AD+N ++ G T LH AA V+ L+SKGA + SDG+T
Sbjct: 16 NKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 72
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 67 DADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGY 126
D I+VEG+ HR +L+A SQ+F +LF G D V E V
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYE------------IDFVSA 84
Query: 127 EAFNVILYYFYTGKLKPSPSEV 148
EA ++ + YT L S + V
Sbjct: 85 EALTALMDFAYTATLTVSTANV 106
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 319 KEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
K++L+ G AD+N ++ G+T LH+AA+ ++ LL+KGA + + DG T + ++
Sbjct: 26 KKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
EVL AD+N K+ G+T LH+AAR ++ LL GA + DG T + + R
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
AD+N K+ G+T LH+AAR ++ LL GA + DG T + + R
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N K+ G+T LH+AAR ++ LL GA + G+TA I
Sbjct: 97 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 67 DADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGY 126
D I+VEG+ HR +L+A SQ+F +LF G D V E V
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYE------------IDFVSA 74
Query: 127 EAFNVILYYFYTGKLKPSPSEV 148
EA ++ + YT L S + V
Sbjct: 75 EALTALMDFAYTATLTVSTANV 96
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
EVL AD+N K+ G+T LH+AAR ++ LL GA + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
AD+N K+ G+T LH+AAR ++ LL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
EVL AD+N K+ G+T LH+AAR ++ LL GA + G+T
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
EVL AD+N K+ G+T LH+AAR ++ LL GA + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
AD+N K+ G+T LH+AAR ++ LL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
EVL AD+N K+ G+T LH+AAR ++ LL GA + G+T + R
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIR 143
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
EVL AD+N K++ G T LH+AARR ++ LL GA + + S G T + + +
Sbjct: 64 EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N ++ G T LH+AA+R ++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 17/77 (22%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
+ D ++VE + H+ ILSA S +FH+LF + ++V +
Sbjct: 33 FCDVTVIVEDRKFRAHKNILSASSTYFHQLFS-----------------VAGQVVELSFI 75
Query: 125 GYEAFNVILYYFYTGKL 141
E F IL Y Y+ K+
Sbjct: 76 RAEIFAEILNYIYSSKI 92
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 17/77 (22%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
+ D ++VE + H+ ILSA S +FH+LF + ++V +
Sbjct: 31 FCDVTVIVEDRKFRAHKNILSASSTYFHQLFS-----------------VAGQVVELSFI 73
Query: 125 GYEAFNVILYYFYTGKL 141
E F IL Y Y+ K+
Sbjct: 74 RAEIFAEILNYIYSSKI 90
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
+TD + V G+ H+ IL+ARS F +F+ + E K V V
Sbjct: 25 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH-------EMEESKKNR-----VEINDV 72
Query: 125 GYEAFNVILYYFYTGK 140
E F ++ + YTGK
Sbjct: 73 EPEVFKEMMCFIYTGK 88
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
+V K +L G AD+N K+ G T LH+AAR V+ LL GA + +G+T + +
Sbjct: 16 EVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 74
Query: 376 CRR 378
R
Sbjct: 75 AAR 77
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGA 360
+V K +L G AD+N K+ G T LH+AAR V+ LL GA
Sbjct: 49 EVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
+V K +L G AD+N K+ G T LH+AAR V+ LL GA + +G+T +
Sbjct: 16 EVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-- 72
Query: 376 CRRMTRRKDYIEATKQGQETNKD 398
+ R ++E K E D
Sbjct: 73 --HLAARNGHLEVVKLLLEAGAD 93
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
+V K +L G AD+N K+ G T LH+AAR V+ LL GA + +G+T + +
Sbjct: 49 EVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Query: 376 CRR 378
R
Sbjct: 108 AAR 110
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGA 360
+V K +L G AD+N K+ G T LH+AAR V+ LL GA
Sbjct: 82 EVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
AD+N K+ G+T LH+AAR ++ LL GA + G+TA I
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N K+ G T LH+AA R ++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
Y DA + V G H +L+ S FF L+ G+ + GS V +P G
Sbjct: 24 YCDATLDVGGLVFKAHWSVLACCSHFFQSLY--GDGSGGSVV------------LPAGFA 69
Query: 125 GYEAFNVILYYFYTGKL 141
E F ++L +FYTG L
Sbjct: 70 --EIFGLLLDFFYTGHL 84
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N + GHT LH+AA ++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N ++A G T LH+AA R ++ LL GA + G+TA I
Sbjct: 97 EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
AD+N + +G T LH+AA P ++ LL GA + +DG T
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWT 82
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 329 LNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
L+ K A G+T LH AA +P L LL A G+TA+ I R+
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N + GHT LH+AA+ ++ LL GA + G+TA I
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
EVL AD+N + G T LH+AA ++ LL GA + +DG T + + +
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK 122
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 329 LNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEA 388
L+ K A G+T LH AA +P L LL A G+TA+ I R+ K+ E
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK-KHHKECEEL 277
Query: 389 TKQGQ 393
+Q Q
Sbjct: 278 LEQAQ 282
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 321 VLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
+L AD+N + GHT LH+AA ++ LL GA + T + G+T
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT 82
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N G T LH+AA ++ LL GA + G+TA I
Sbjct: 64 EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
+TD + V G+ H+ IL+ARS F +F+ + E K V V
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH-------EMEESKKNR-----VEINDV 221
Query: 125 GYEAFNVILYYFYTGK 140
E F ++ + YTGK
Sbjct: 222 EPEVFKEMMCFIYTGK 237
>pdb|2WYH|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYH|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYI|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
pdb|2WYI|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
Length = 923
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 402 IDVLEREMRRNSMSGNLALSSEVMADDFQMKLNY---LENRVAFARL--LFPSEARVAMH 456
ID+ ER+ RR+ L L++ + + +L + +N++ RL LFP+ + H
Sbjct: 652 IDITERQARRSQEKAELTLTTLIRMEKNNPRLQFTTRFDNQMTNHRLRVLFPTHLKTDHH 711
Query: 457 IADA 460
+AD+
Sbjct: 712 LADS 715
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
Y DA + V G H +L+ S FF ++ G+ GS V +P G
Sbjct: 25 YCDATLDVGGLVFKAHWSVLACCSHFFQRIY--GDGTGGSVV------------LPAGFA 70
Query: 125 GYEAFNVILYYFYTGKL 141
E F ++L +FYTG L
Sbjct: 71 --EIFGLLLDFFYTGHL 85
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 66 TDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVG 125
TD IVV + H+ +L A S F+ +F + S ++ L E+ P
Sbjct: 30 TDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVIN------LDPEINP----- 78
Query: 126 YEAFNVILYYFYTGKL 141
E FN++L + YT +L
Sbjct: 79 -EGFNILLDFMYTSRL 93
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACA-SETTSDGQTAVAICRRMTRRKDY 385
AD+N++ RG T L +A +K ++ LL + ++T SDG+TA+ + + +K
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Query: 386 IEATKQGQETNKDRLCIDVLEREMRRN 412
K+G T+ C D++ RRN
Sbjct: 290 ELLCKRGASTD----CGDLV-MTARRN 311
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
AD+N + +G+T LH+AA ++ LL GA + +DG T
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST 82
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACA-SETTSDGQTAVAICRRMTRRKDY 385
AD+N++ RG T L +A +K ++ LL + ++T SDG+TA+ + + +K
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 386 IEATKQGQETN 396
K+G T+
Sbjct: 270 ELLCKRGASTD 280
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 67 DADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGY 126
D ++VEG+ HR +L+A S +FH D + +T +P +V
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE------------LTVTLP-EEVTV 84
Query: 127 EAFNVILYYFYTGKLKPSPSEV 148
+ F ++ + YT KL S V
Sbjct: 85 KGFEPLIQFAYTAKLILSKDNV 106
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N K+ G T LH+AA ++ LL GA + G+TA I
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGA 360
AD+N + GHT LH+AA+ ++ LL GA
Sbjct: 38 ADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
AD+N + G T LH+AA+R ++ LL GA + + S G+T
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N ++ G T LH+AA ++ LL GA + G+TA I
Sbjct: 64 EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
AD+ K+ G T LH+AAR V+ LL GA G+TA I
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378
EVL AD++ + G+T LH+AA ++ LL GA + SDG T + + +
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N ++ G T LH+AA+ ++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
EVL AD+N ++ G T LH+AA R V+ LL GA + +G T
Sbjct: 64 EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFT 115
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N + G T LH+AA ++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
AD+ K+ G T LH+AAR V+ LL GA + G+TA I
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
EVL AD+N + G T LH+AA+R ++ LL GA + + G T
Sbjct: 64 EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 327 ADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYI 386
AD+N ++ G T LH+AAR ++ LL GA + G T + + + +
Sbjct: 38 ADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 387 EATKQGQETNKD 398
K G + N D
Sbjct: 98 VLLKYGADVNAD 109
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N + +G+T LH+AA ++ LL GA + G+TA I
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 28.9 bits (63), Expect = 7.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQT 371
EVL AD+N + G T LH+AA R ++ LL GA + G T
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT 115
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 328 DLNLKNARGHTVLHVAARRKEPAVLVTLLSKGA 360
+LN +N G T LH AA + ++ LL+KGA
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|2R0F|A Chain A, Ligand Free Structure Of Fungal Lectin Cgl3
pdb|2R0F|B Chain B, Ligand Free Structure Of Fungal Lectin Cgl3
pdb|2R0H|A Chain A, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
pdb|2R0H|B Chain B, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
pdb|2R0H|C Chain C, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
pdb|2R0H|D Chain D, Fungal Lectin Cgl3 In Complex With Chitotriose
(Chitotetraose)
Length = 164
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 328 DLNLKNARGHTVLHVAARRKEPAVLVTLLSKG 359
++NL NA+G +LH+ RR+E A + + G
Sbjct: 47 NVNLINAKGDVLLHIGIRRRENAFVFNSIPYG 78
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N ++ G T LH+AA R ++ LL GA + G+TA I
Sbjct: 64 EVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 67 DADIVVEGKSVAVHRCILSARSQFFH 92
D I VEG+ HR +L+A S +FH
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFH 56
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 65 YTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124
+TD + V G+ H+ IL+ARS F F+ + K + + ++ P
Sbjct: 34 FTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEES------KKNRVEINDVEP---- 83
Query: 125 GYEAFNVILYYFYTGK 140
E F + YTGK
Sbjct: 84 --EVFKEXXCFIYTGK 97
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 316 KVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAV 373
K E+L A++N KN T LHVAA R V+ L GA + S GQTA+
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N + G T LH+AA ++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N K+A G T L++AA ++ LL GA + G+TA I
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 320 EVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAI 375
EVL AD+N ++ G T LH+AA ++ LL GA + G+TA I
Sbjct: 64 EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,576,260
Number of Sequences: 62578
Number of extensions: 352085
Number of successful extensions: 970
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 149
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)