BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010296
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H V V LS D S S DG + WD+++G +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR----------------- 466
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT--RIQEHI-QAFPGHRGPVSCLT 269
R +K +L++A S D R + S DR I LW+T + I + GHR VSC+
Sbjct: 467 --RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR 524
Query: 270 FRQGTSE--LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV--GRDR 325
F T + + S S+D+TVK+WN + STL GH V T+ + + L G+D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV-AVSPDGSLCASGGKDG 583
Query: 326 SMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPV 378
+ LW + E +L S + CF N +L + + I++W L K V
Sbjct: 584 VVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV 636
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 158 HRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA 216
H VTA+A D++ SAS+D SI+ W ++ K++G Q R
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD------------KAYGVA--QRRL 426
Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE 276
T S + + +SSDG++ SG D + LWD + F GH V + F +
Sbjct: 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 277 LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR------KERVLTVGRDRSMQLW 330
+ S S DRT+K+WN + G + + C+R + +++ D+++++W
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Query: 331 KVPEESRLVFRAPASSLECCCFISNDEFL--SGSDDGSIELWSLLRKKPVY 379
+ A + +S D L SG DG + LW L K +Y
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 40/155 (25%)
Query: 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQ 213
L H V+ VA+S D S S KDG +L WD++ GK + L
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---------------- 599
Query: 214 GRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF----------PGHRG 263
++ ++ S RY + I +WD + ++ + G
Sbjct: 600 -----EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654
Query: 264 P-------VSC--LTFRQGTSELFSGSFDRTVKIW 289
P + C L + S LFSG D +++W
Sbjct: 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 37/247 (14%)
Query: 132 SGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG 191
SG R + +V E + L H +V + L E + S S+D ++ WD+ +G
Sbjct: 174 SGSTDRTL--KVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG 229
Query: 192 KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI 251
+ + VL H A V DGR + SG D + +WD
Sbjct: 230 QCL-------HVLMGHVAA--------------VRCVQYDGRRVVSGAYDFMVKVWDPET 268
Query: 252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID 311
+ + GH V L F + SGS D ++++W+ E I TL GHQS LT
Sbjct: 269 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSG 324
Query: 312 CLRKERVLTVGR-DRSMQLWKVPEESRL-VFRAP---ASSLECCCFISNDEF-LSGSDDG 365
K+ +L G D ++++W + L + P S++ C F N F ++ SDDG
Sbjct: 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDG 382
Query: 366 SIELWSL 372
+++LW L
Sbjct: 383 TVKLWDL 389
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNA 291
G + SG D + +W + ++ GH G V R + SGS DRT+K+WNA
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNA 186
Query: 292 EDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECC 350
E I TL+GH S V + L ++RV++ RD ++++W + L V +++ C
Sbjct: 187 ETGECIHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 351 CFISNDEFLSGSDDGSIELW 370
+ +SG+ D +++W
Sbjct: 246 QY-DGRRVVSGAYDFMVKVW 264
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 34/179 (18%)
Query: 136 RRVIAS------RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVS 189
RRV++ +V PE L H V +L D S S D SI WDV
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVE 307
Query: 190 SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249
+G + L + + KD L SG D + +WD
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKD---------------------NILVSGNADSTVKIWDI 346
Query: 250 RIQEHIQAFPG---HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS 305
+ + +Q G H+ V+CL F + + + + S D TVK+W+ + +I L +S
Sbjct: 347 KTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 25/252 (9%)
Query: 127 EQLEESGRVRRVIASRVQKPEATDEF--RVLLKHRQSVTAVALSEDDSKGFSASKDGSIL 184
+ + + R + +I ++ + E R L H V+ V +S D S S DG++
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 185 HWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHI 244
WD+++G + R +K +L++A SSD R + SG D+ I
Sbjct: 112 LWDLTTGTTTR-------------------RFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 245 HLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAYISTLF 301
LW+T + ++ H VSC+ F +S + S +D+ VK+WN + +
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 302 GHQSEVLTIDCLRKERVLTV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLS 360
GH + T+ + G+D LW + E L + CF N +L
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 361 GSDDGSIELWSL 372
+ SI++W L
Sbjct: 273 AATGPSIKIWDL 284
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +I+ W ++ + ++G PQ RA + H ++ + +SSDG+
Sbjct: 55 LSASRDKTIIMWKLTRDE------------TNYGI--PQ-RALRGHSHFVSDVVISSDGQ 99
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
+ SG D + LWD + F GH V + F ++ SGS D+T+K+WN
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159
Query: 294 RAYISTLFGHQSEVLTIDCLR------KERVLTVGRDRSMQLWKVPEESRLVFRAPASSL 347
+ SE + C+R +++ G D+ +++W + +
Sbjct: 160 VCKYTVQDESHSEW--VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217
Query: 348 ECCCFISNDEFL--SGSDDGSIELWSLLRKKPVYIV 381
+S D L SG DG LW L K +Y +
Sbjct: 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 54/272 (19%)
Query: 235 LASGGLDRHIHLWDTRIQEHIQAFP-----GHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289
+ S D+ I +W E P GH VS + SGS+D T+++W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLE 348
+ GH +VL++ R + G RD++++LW + + + S
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173
Query: 349 CCCF-----ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403
C SN +S D +++W+L K +K H
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHI----------------- 212
Query: 404 GHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463
GH+ G LN TV L ASG +G LW + + LY
Sbjct: 213 GHT--GYLN--------------TVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT 252
Query: 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
L +N+L F+ + +L A G P + W
Sbjct: 253 LDGGDIINALCFSPNRYWLCAATG--PSIKIW 282
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 34/177 (19%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV-KYLWPSEE-------VL 204
R + H + V +VA S D+ + S S+D +I W+ GV KY E V
Sbjct: 122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT---LGVCKYTVQDESHSEWVSCVR 178
Query: 205 KSHGAKDP---------------------QGRATKQSKHILALAVSSDGRYLASGGLDRH 243
S + +P + + ++ + VS DG ASGG D
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238
Query: 244 IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300
LWD +H+ G ++ L F L + + ++KIW+ E + + L
Sbjct: 239 AMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDEL 293
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 299 TLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEES------RLVFRAPASSLECC 350
TL GH V I + + +L+ RD+++ +WK+ + + R + +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 351 CFISNDEF-LSGSDDGSIELWSL 372
S+ +F LSGS DG++ LW L
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDL 115
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 25/252 (9%)
Query: 127 EQLEESGRVRRVIASRVQKPEATDEF--RVLLKHRQSVTAVALSEDDSKGFSASKDGSIL 184
+ + + R + +I ++ + E R L H V+ V +S D S S DG++
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 185 HWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHI 244
WD+++G + R +K +L++A SSD R + SG D+ I
Sbjct: 89 LWDLTTGTTTR-------------------RFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 245 HLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAYISTLF 301
LW+T + ++ H VSC+ F +S + S +D+ VK+WN + +
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 302 GHQSEVLTIDCLRKERVLTV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLS 360
GH + T+ + G+D LW + E L + CF N +L
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249
Query: 361 GSDDGSIELWSL 372
+ SI++W L
Sbjct: 250 AATGPSIKIWDL 261
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +I+ W ++ + ++G PQ RA + H ++ + +SSDG+
Sbjct: 32 LSASRDKTIIMWKLTRDE------------TNYGI--PQ-RALRGHSHFVSDVVISSDGQ 76
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
+ SG D + LWD + F GH V + F ++ SGS D+T+K+WN
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 136
Query: 294 RAYISTLFGHQSEVLTIDCLR------KERVLTVGRDRSMQLWKVPEESRLVFRAPASSL 347
+ SE + C+R +++ G D+ +++W + +
Sbjct: 137 VCKYTVQDESHSEW--VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 194
Query: 348 ECCCFISNDEFL--SGSDDGSIELWSLLRKKPVYIV 381
+S D L SG DG LW L K +Y +
Sbjct: 195 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 230
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 54/272 (19%)
Query: 235 LASGGLDRHIHLWDTRIQEHIQAFP-----GHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289
+ S D+ I +W E P GH VS + SGS+D T+++W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRLVFRAPASSLE 348
+ GH +VL++ R + G RD++++LW + + + S
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 150
Query: 349 CCCF-----ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403
C SN +S D +++W+L K +K H
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHI----------------- 189
Query: 404 GHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463
GH+ G LN TV L ASG +G LW + + LY
Sbjct: 190 GHT--GYLN--------------TVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYT 229
Query: 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
L +N+L F+ + +L A G P + W
Sbjct: 230 LDGGDIINALCFSPNRYWLCAATG--PSIKIW 259
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 34/177 (19%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV-KYLWPSEE-------VL 204
R + H + V +VA S D+ + S S+D +I W+ GV KY E V
Sbjct: 99 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT---LGVCKYTVQDESHSEWVSCVR 155
Query: 205 KSHGAKDP---------------------QGRATKQSKHILALAVSSDGRYLASGGLDRH 243
S + +P + + ++ + VS DG ASGG D
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 215
Query: 244 IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300
LWD +H+ G ++ L F L + + ++KIW+ E + + L
Sbjct: 216 AMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDEL 270
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 299 TLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEES------RLVFRAPASSLECC 350
TL GH V I + + +L+ RD+++ +WK+ + + R + +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 351 CFISNDEF-LSGSDDGSIELWSL 372
S+ +F LSGS DG++ LW L
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDL 92
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 130
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 131 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
+ L H V+AV + D S S+S DG WD +SG+ +K L
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------------- 211
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
+ + + S +G+Y+ + LD + LWD + ++ + GH+ C+
Sbjct: 212 ----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 267
Query: 272 ---QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL---TVGRDR 325
G + SGS D V IWN + + + L GH V++ C E ++ + D+
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 327
Query: 326 SMQLWK 331
+++LWK
Sbjct: 328 TIKLWK 333
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 34 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------EKTI 85
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 86 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 131
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 132 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 248
Query: 376 K 376
K
Sbjct: 249 K 249
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 112
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 113 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 124 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 182 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 16 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 67
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 68 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 230
Query: 376 K 376
K
Sbjct: 231 K 231
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 128
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 129 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
+ L H V+AV + D S S+S DG WD +SG+ +K L
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------------- 209
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
+ + + S +G+Y+ + LD + LWD + ++ + GH+ C+
Sbjct: 210 ----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 265
Query: 272 ---QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL---TVGRDR 325
G + SGS D V IWN + + + L GH V++ C E ++ + D+
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325
Query: 326 SMQLWK 331
+++LWK
Sbjct: 326 TIKLWK 331
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 32 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------EKTI 83
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 84 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 129
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 246
Query: 376 K 376
K
Sbjct: 247 K 247
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 111
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 112 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 123 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 181 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 223 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 283 HTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 15 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 66
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 67 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 112
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 113 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 172
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 173 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 229
Query: 376 K 376
K
Sbjct: 230 K 230
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 121 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + +P K S +G+Y+ + LD +
Sbjct: 179 WDTASGQCLKTLIDDD---------NPPVSFVK---------FSPNGKYILAATLDNTLK 220
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 200 SEEVLKSHGAKDPQGRATKQSKHILAL---AVSSDGRYLASGGLDRHIHLWDTRIQEHIQ 256
+++++K GA D + T S H L + A SSD L S D+ + +WD + ++
Sbjct: 46 ADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 257 AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK- 315
GH V C F ++ + SGSFD +V+IW+ + + TL H V + R
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 316 ERVLTVGRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIEL 369
+++ D ++W L P S ++ F N ++ L+ + D +++L
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKL 221
Query: 370 WSLLRKK 376
W + K
Sbjct: 222 WDYSKGK 228
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 123
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 124 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 135 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 193 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 235 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 295 HTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 27 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 78
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 79 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 124
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 125 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 184
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 185 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 241
Query: 376 K 376
K
Sbjct: 242 K 242
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 121 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + +P K S +G+Y+ + LD +
Sbjct: 179 WDTASGQCLKTLIDDD---------NPPVSFVK---------FSPNGKYILAATLDNTLK 220
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++L+K
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLFK 312
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 99/245 (40%), Gaps = 34/245 (13%)
Query: 141 SRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPS 200
S KP +F L H ++V++V S + S+S D I W GK
Sbjct: 9 SEFVKPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------F 60
Query: 201 EEVLKSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF 258
E+ + H G D +A SSD L S D+ + +WD + ++
Sbjct: 61 EKTISGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ER 317
GH V C F ++ + SGSFD +V+IW+ + + TL H V + R
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 318 VLTVGRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWS 371
+++ D ++W L P S ++ F N ++ L+ + D +++LW
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWD 223
Query: 372 LLRKK 376
+ K
Sbjct: 224 YSKGK 228
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 121 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + +P K S +G+Y+ + LD +
Sbjct: 179 WDTASGQCLKTLIDDD---------NPPVSFVK---------FSPNGKYILAATLDNTLK 220
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++L+K
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLYK 312
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 99/245 (40%), Gaps = 34/245 (13%)
Query: 141 SRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPS 200
S KP +F L H ++V++V S + S+S D I W GK
Sbjct: 9 SEFVKPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------F 60
Query: 201 EEVLKSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF 258
E+ + H G D +A SSD L S D+ + +WD + ++
Sbjct: 61 EKTISGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ER 317
GH V C F ++ + SGSFD +V+IW+ + + TL H V + R
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 318 VLTVGRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWS 371
+++ D ++W L P S ++ F N ++ L+ + D +++LW
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWD 223
Query: 372 LLRKK 376
+ K
Sbjct: 224 YSKGK 228
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 112
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 113 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 124 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 182 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 16 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 67
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 68 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 230
Query: 376 K 376
K
Sbjct: 231 K 231
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 107
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 108 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 119 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 177 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 219 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 279 HTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 11 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 62
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 63 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 108
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 109 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 168
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 225
Query: 376 K 376
K
Sbjct: 226 K 226
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 106
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 107 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 118 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 176 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 10 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 61
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 62 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 224
Query: 376 K 376
K
Sbjct: 225 K 225
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 112
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 113 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 124 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + +P K S +G+Y+ + LD +
Sbjct: 182 WDTASGQCLKTLIDDD---------NPPVSFVK---------FSPNGKYILAATLDNTLK 223
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 16 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 67
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 68 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 230
Query: 376 K 376
K
Sbjct: 231 K 231
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 105
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 106 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 117 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 175 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 217 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 277 HTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 34/247 (13%)
Query: 139 IASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW 198
+ S KP +F L H ++V++V S + S+S D I W GK
Sbjct: 3 LGSTPVKPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------ 55
Query: 199 PSEEVLKSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ 256
E+ + H G D +A SSD L S D+ + +WD + ++
Sbjct: 56 -FEKTISGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 100
Query: 257 AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK- 315
GH V C F ++ + SGSFD +V+IW+ + + TL H V + R
Sbjct: 101 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 160
Query: 316 ERVLTVGRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIEL 369
+++ D ++W L P S ++ F N ++ L+ + D +++L
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKL 217
Query: 370 WSLLRKK 376
W + K
Sbjct: 218 WDYSKGK 224
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 102
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 103 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 114 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 172 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 214 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 274 HTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 6 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 57
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 58 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 103
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 104 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 163
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 220
Query: 376 K 376
K
Sbjct: 221 K 221
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 106
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + + ++ P H PVS + F +
Sbjct: 107 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 26/212 (12%)
Query: 126 QEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILH 185
Q L SG + R+ + + L H V+AV + D S S+S DG
Sbjct: 118 QSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245
WD +SG+ +K L + + + S +G+Y+ + LD +
Sbjct: 176 WDTASGQCLKTL------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 246 LWDTRIQEHIQAFPGHRGPVSCLTFR---QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302
LWD + ++ + GH+ C+ G + SGS D V IWN + + + L G
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 303 HQSEVLTIDCLRKERVL---TVGRDRSMQLWK 331
H V++ C E ++ + D++++LWK
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL 204
KP +F L H ++V++V S + S+S D I W GK E+ +
Sbjct: 10 KPNYALKF-TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTI 61
Query: 205 KSH--GAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
H G D +A SSD L S D+ + +WD + ++ GH
Sbjct: 62 SGHKLGISD--------------VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTV 321
V C F ++ + SGSFD +V+IW+ + + TL H V + R +++
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 322 GRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRK 375
D ++W L P S ++ F N ++ L+ + D +++LW +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKG 224
Query: 376 K 376
K
Sbjct: 225 K 225
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + ++ P H PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D +++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
+ L H V+AV + D S S+S DG WD +SG+ +K L + +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---------N 195
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
P K S +G+Y+ + LD + LWD + ++ + GH+ C+
Sbjct: 196 PPVSFVK---------FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 272 ---QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL---TVGRDR 325
G + SGS D V IWN + + + L GH V++ C E ++ + D+
Sbjct: 247 FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 326 SMQLWK 331
+++LWK
Sbjct: 307 TIKLWK 312
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 200 SEEVLKSHGAKDPQGRATKQSKHILAL---AVSSDGRYLASGGLDRHIHLWDTRIQEHIQ 256
+++++K GA D + T S H L + A SSD L S D+ + +WD + ++
Sbjct: 46 ADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 257 AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
GH V C F ++ + SGSFD +V+IW+ + + TL H V
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +++ W ++ G K+ P R+ K HI+ +++DG
Sbjct: 34 LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
Y S D+ + LWD E Q F GH+ V + + S + SGS D+T+K+W +
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
+ ++TL GH V + + E+ +++ G D+ ++ W + + + F S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
++ + + S DG I LW+L KK Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 32/130 (24%)
Query: 150 DEFRV---LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLK- 205
++F++ + H ++ + S D + SA KDG I W++++ K L +EV
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSL 243
Query: 206 -------------SHGAK----DPQ-----------GRATKQSKHILALAVSSDGRYLAS 237
+ G K DPQ G + H ++LA S+DG+ L +
Sbjct: 244 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 238 GGLDRHIHLW 247
G D I +W
Sbjct: 304 GYTDNVIRVW 313
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 17/162 (10%)
Query: 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA 209
+ ++ + H+ V +V + + S S S+D +I W + KG L H
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI---KG-----QCLATLLGHND 149
Query: 210 KDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCL 268
Q R K D + S G D+ + W+ Q I+A F GH ++ L
Sbjct: 150 WVSQVRVVPNEK------ADDDSVTIISAGNDKXVKAWNLN-QFQIEADFIGHNSNINTL 202
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
T + + S D + +WN + TL Q EV ++
Sbjct: 203 TASPDGTLIASAGKDGEIXLWNLAAKKAXYTL-SAQDEVFSL 243
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +++ W ++ G K+ P R+ K HI+ +++DG
Sbjct: 34 LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
Y S D+ + LWD E Q F GH+ V + + S + SGS D+T+K+W +
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
+ ++TL GH V + + E+ +++ G D+ ++ W + + + F S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
++ + + S DG I LW+L KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 32/138 (23%)
Query: 142 RVQKPEATDEFRV---LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW 198
++ K ++F++ + H ++ + S D + SA KDG I+ W++++ K + L
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 199 PSEEVLK--------------SHGAK----DPQ-----------GRATKQSKHILALAVS 229
+EV + G K DPQ G + H ++LA S
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 230 SDGRYLASGGLDRHIHLW 247
+DG+ L +G D I +W
Sbjct: 296 ADGQTLFAGYTDNVIRVW 313
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA 209
+ ++ + H+ V +V + + S S S+D +I W + KG L H
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KG-----QCLATLLGHND 149
Query: 210 KDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCL 268
Q R K D + S G D+ + W+ Q I+A F GH ++ L
Sbjct: 150 WVSQVRVVPNEK------ADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTL 202
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
T + + S D + +WN + + TL Q EV ++
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSL 243
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 26/233 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+ + H+ ++ VA S D + SAS D ++ WDVSSGK +K LK H
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------TLKGH----- 109
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ 272
S ++ + + SG D + +WD + ++ P H PVS + F +
Sbjct: 110 -------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 273 GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL--RKERVLTVGRDRSMQLW 330
S + S S+D +IW+ + TL + ++ + +L D ++LW
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 331 KVPEESRLVFRAPASSLECCCFIS-----NDEFLSGSDDGSIELWSLLRKKPV 378
+ L + + C F + +SGS+D + +W+L K+ V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
+ L H V+AV + D S S+S DG WD +SG+ +K L
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------------- 190
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
+ + + S +G+Y+ + LD + LWD + ++ + GH+ C+
Sbjct: 191 ----IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 272 ---QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL---TVGRDR 325
G + SGS D V IWN + + + L GH V++ C E ++ + D+
Sbjct: 247 FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 326 SMQLWK 331
+++LWK
Sbjct: 307 TIKLWK 312
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 200 SEEVLKSHGAKDPQGRATKQSKHILAL---AVSSDGRYLASGGLDRHIHLWDTRIQEHIQ 256
+++++K GA D + T S H L + A SSD L S D+ + +WD + ++
Sbjct: 46 ADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 257 AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
GH V C F ++ + SGSFD +V+IW+ + + TL H V
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +++ W ++ G K+ P R+ K HI+ +++DG
Sbjct: 28 LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 72
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
Y S D+ + LWD E Q F GH+ V + + S + SGS D+T+K+W +
Sbjct: 73 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 132
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
+ ++TL GH V + + E+ +++ G D+ ++ W + + + F S
Sbjct: 133 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 191
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
++ + + S DG I LW+L KK +Y +
Sbjct: 192 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 32/138 (23%)
Query: 142 RVQKPEATDEFRV---LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW 198
++ K ++F++ + H ++ + S D + SA KDG I+ W++++ K + L
Sbjct: 170 KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Query: 199 PSEEVLK--------------SHGAK----DPQ-----------GRATKQSKHILALAVS 229
+EV + G K DPQ G + H ++LA S
Sbjct: 230 AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 230 SDGRYLASGGLDRHIHLW 247
+DG+ L +G D I +W
Sbjct: 290 ADGQTLFAGYTDNVIRVW 307
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)
Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
R+ + ++ + H+ V +V + + S S S+D +I W + KG
Sbjct: 84 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KG-----QCL 135
Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPG 260
L H Q R K D + S G D+ + W+ Q I+A F G
Sbjct: 136 ATLLGHNDWVSQVRVVPNEK------ADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIG 188
Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
H ++ LT + + S D + +WN + + TL Q EV ++
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSL 237
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +++ W ++ G K+ P R+ K HI+ +++DG
Sbjct: 34 LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
Y S D+ + LWD E Q F GH+ V + + S + SGS D+T+K+W +
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
+ ++TL GH V + + E+ +++ G D+ ++ W + + + F S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
++ + + S DG I LW+L KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 32/138 (23%)
Query: 142 RVQKPEATDEFRV---LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW 198
++ K ++F++ + H ++ + S D + SA KDG I+ W++++ K + L
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 199 PSEEVLK--------------SHGAK----DPQ-----------GRATKQSKHILALAVS 229
+EV + G K DPQ G + H ++LA S
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 230 SDGRYLASGGLDRHIHLW 247
+DG+ L +G D I +W
Sbjct: 296 ADGQTLFAGYTDNVIRVW 313
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA 209
+ ++ + H+ V +V + + S S S+D +I W + KG L H
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KG-----QCLATLLGHND 149
Query: 210 KDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCL 268
Q R K D + S G D+ + W+ Q I+A F GH ++ L
Sbjct: 150 WVSQVRVVPNEK------ADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTL 202
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
T + + S D + +WN + + TL Q EV ++
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSL 243
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +++ W ++ G K+ P R+ K HI+ +++DG
Sbjct: 34 LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
Y S D+ + LWD E Q F GH+ V + + S + SGS D+T+K+W +
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
+ ++TL GH V + + E+ +++ G D+ ++ W + + + F S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
++ + + S DG I LW+L KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 32/138 (23%)
Query: 142 RVQKPEATDEFRV---LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW 198
++ K ++F++ + H ++ + S D + SA KDG I+ W++++ K + L
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 199 PSEEVLK--------------SHGAK----DPQ-----------GRATKQSKHILALAVS 229
+EV + G K DPQ G + H ++LA S
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 230 SDGRYLASGGLDRHIHLW 247
+DG+ L +G D I +W
Sbjct: 296 ADGQTLFAGYTDNVIRVW 313
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA 209
+ ++ + H+ V +V + + S S S+D +I W + KG L H
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KG-----QCLATLLGHND 149
Query: 210 KDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCL 268
Q R K D + S G D+ + W+ Q I+A F GH ++ L
Sbjct: 150 WVSQVRVVPNEK------ADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTL 202
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
T + + S D + +WN + + TL Q EV ++
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSL 243
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 26/217 (11%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGR 233
SAS+D +++ W ++ G K+ P R+ K HI+ +++DG
Sbjct: 34 LSASRDKTLISWKLT-GDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
Y S D+ + LWD E Q F GH+ V + + S + SGS D+T+K+W +
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Query: 294 RAYISTLFGHQSEVLTIDCLRKER-------VLTVGRDRSMQLWKVPE-ESRLVFRAPAS 345
+ ++TL GH V + + E+ +++ G D+ ++ W + + + F S
Sbjct: 139 QC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 346 SLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIV 381
++ + + S DG I LW+L KK +Y +
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 32/138 (23%)
Query: 142 RVQKPEATDEFRV---LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLW 198
++ K ++F++ + H ++ + S D + SA KDG I+ W++++ K + L
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 199 PSEEVLK--------------SHGAK----DPQ-----------GRATKQSKHILALAVS 229
+EV + G K DPQ G + H ++LA S
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 230 SDGRYLASGGLDRHIHLW 247
+DG+ L +G D I +W
Sbjct: 296 ADGQTLFAGYTDNVIRVW 313
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 17/170 (10%)
Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
R+ + ++ + H+ V +V + + S S S+D +I W + KG
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---KG-----QCL 141
Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPG 260
L H Q R K D + S G D+ + W+ Q I+A F G
Sbjct: 142 ATLLGHNDWVSQVRVVPNEK------ADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIG 194
Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
H ++ LT + + S D + +WN + + TL Q EV ++
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSL 243
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 24/222 (10%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
+ L H SV VA S D SAS D ++ W+ +G+ ++ L
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-------------- 217
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
T S + +A S DG+ +AS D+ + LW+ R + +Q GH V+ + FR
Sbjct: 218 -----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID-CLRKERVLTVGRDRSMQLW 330
+ S S D+TVK+WN + + TL GH S V + + + + D++++LW
Sbjct: 272 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 331 KVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWS 371
+ +SS+ F + + + S SDD +++LW+
Sbjct: 331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
+ L H SV VA S D SAS D ++ W+ +G+ ++ L
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTL-------------- 340
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
T S + +A S DG+ +AS D+ + LW+ R + +Q GH V + F
Sbjct: 341 -----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 394
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLW 330
+ S S D+TVK+WN + + TL GH S V + ++ + + D++++LW
Sbjct: 395 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Query: 331 KVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWS 371
+ +SS+ F + + + S SDD +++LW+
Sbjct: 454 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 24/223 (10%)
Query: 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAK 210
E L H SV VA S D SAS D ++ W+ +G+ ++ L
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL------------- 53
Query: 211 DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTF 270
T S + +A S DG+ +AS D+ + LW+ R + +Q GH V + F
Sbjct: 54 ------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 106
Query: 271 RQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID-CLRKERVLTVGRDRSMQL 329
+ S S D+TVK+WN + + TL GH S V + + + + D++++L
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 330 WKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWS 371
W + +SS+ F + + + S SDD +++LW+
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 4/168 (2%)
Query: 206 SHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV 265
SH + R S + +A S DG+ +AS D+ + LW+ R + +Q GH V
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 60
Query: 266 SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID-CLRKERVLTVGRD 324
+ F + S S D+TVK+WN + + TL GH S V + + + + D
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 325 RSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWS 371
++++LW + +SS+ F + + + S SDD +++LW+
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
+ L H SV VA S DD SAS D ++ W+ +G+ ++ L
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTL-------------- 463
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
T S + +A S DG+ +AS D+ + LW+ R + +Q GH V + F
Sbjct: 464 -----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 517
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID-CLRKERVLTVGRDRSMQLW 330
+ S S D+TVK+WN + + TL GH S V + + + + D++++LW
Sbjct: 518 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Query: 331 K 331
Sbjct: 577 N 577
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 40/245 (16%)
Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSE 201
RV + L+ H ++V + L ++ + SKD SI WD++S +
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITL----R 249
Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH 261
VL H A V D +Y+ S DR I +W+T E ++ GH
Sbjct: 250 RVLVGHRAA--------------VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295
Query: 262 RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR--KERVL 319
+ ++CL +R + SGS D T+++W+ E A + L GH+ + C+R +R++
Sbjct: 296 KRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKRIV 350
Query: 320 TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN---------DEF--LSGSDDGSIE 368
+ D +++W + + L RAPA +L + + DEF +S S D +I
Sbjct: 351 SGAYDGKIKVWDLV--AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 408
Query: 369 LWSLL 373
+W L
Sbjct: 409 IWDFL 413
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 25/243 (10%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD---------VSSGKGVKYLWPSEEV 203
R+ + S L DD K S +D +I WD ++ G +E
Sbjct: 125 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 184
Query: 204 LKSHGAKDPQGRA----TKQSKHIL------ALAVSSDGRYLASGGLDRHIHLWDTRIQE 253
+ G+ D R T + + L L + + + + DR I +WD
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 244
Query: 254 HI---QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
I + GHR V+ + F + S S DRT+K+WN ++ TL GH+ + +
Sbjct: 245 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302
Query: 311 DCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELW 370
R V++ D +++LW + + L L C N +SG+ DG I++W
Sbjct: 303 Q-YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361
Query: 371 SLL 373
L+
Sbjct: 362 DLV 364
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 21/251 (8%)
Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
D + + SG D I +WD E + GH G V CL + + + +GS D TV++W+
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWD 199
Query: 291 AEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF-------RAP 343
++TL H VL + ++T +DRS+ +W + + + RA
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 344 ASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403
+ ++ + +S S D +I++W+ + V + N H G+ + + + +
Sbjct: 259 VNVVD----FDDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHK--RGIACLQYRDRLVVS 311
Query: 404 GHSENG----NLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKDIQ 459
G S+N ++ G + + SGA +G +++W + +
Sbjct: 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA 371
Query: 460 PLYNLPLVGFV 470
P L L V
Sbjct: 372 PAGTLCLRTLV 382
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H + A+ D SAS+DG ++ WD + V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
+S ++ A + G Y+A GGLD +++ + +E + GH G +SC
Sbjct: 94 ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
F +++ + S D T +W+ E +T GH +V+++ R+ G D S
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
+LW V E R F S + CF N + F +GSDD + L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 53/310 (17%)
Query: 211 DPQGRATKQSKH--------ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
DP GR +++ I A+ +D R L S D + +WD+ + A P
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR---AYIS-TLFGHQSEVLTIDCLRKERV 318
V + + + G D I+N + R +S L GH + L ++
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKK 376
+T D + LW + + + ++ D F+SG+ D S +LW +R+
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREG 216
Query: 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDL 436
H E D I NGN
Sbjct: 217 MCRQTFTGH---------ESDINAIC--FFPNGN-------------------------A 240
Query: 437 AASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496
A+G+ + + RL+ + ++ + + ++ + G + S++F+KSG+ L+AG + W
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGY-DDFNCNVWD 298
Query: 497 HLPAARNGVL 506
L A R GVL
Sbjct: 299 ALKADRAGVL 308
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 14/190 (7%)
Query: 188 VSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247
SSG LW E ++ G +++L+++ D R SG D LW
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTG-------DVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
D R Q F GH ++ + F + +GS D T ++++ + T + H + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNII 270
Query: 308 LTIDCL---RKERVLTVGRDR-SMQLWKVPEESRLVFRAPASSLECCCFISND--EFLSG 361
I + + R+L G D + +W + R A + C +++D +G
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 362 SDDGSIELWS 371
S D +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H + A+ D SAS+DG ++ WD + V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
+S ++ A + G Y+A GGLD +++ + +E + GH G +SC
Sbjct: 94 ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
F +++ + S D T +W+ E +T GH +V+++ R+ G D S
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
+LW V E R F S + CF N + F +GSDD + L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 116/310 (37%), Gaps = 53/310 (17%)
Query: 211 DPQGRATKQSKH--------ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHR 262
DP GR +++ I A+ +D R L S D + +WD+ + A P
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR---AYIS-TLFGHQSEVLTIDCLRKERV 318
V + + + G D I+N + R +S L GH + L ++
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKK 376
+T D + LW + + + ++ D F+SG+ D S +LW +R+
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREG 216
Query: 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGXXXXXXXXXXXXXXTVCGGSDL 436
H E D I NGN
Sbjct: 217 MCRQTFTGH---------ESDINAIC--FFPNGN-------------------------A 240
Query: 437 AASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496
A+G+ + + RL+ + ++ + + ++ + G + S++F+KSG+ L+AG + W
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGY-DDFNCNVWD 298
Query: 497 HLPAARNGVL 506
L A R GVL
Sbjct: 299 ALKADRAGVL 308
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 14/190 (7%)
Query: 188 VSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247
SSG LW E ++ G +++L+++ D R SG D LW
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTG-------DVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
D R Q F GH ++ + F + +GS D T ++++ + T + H + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNII 270
Query: 308 LTIDCL---RKERVLTVGRDR-SMQLWKVPEESRLVFRAPASSLECCCFISND--EFLSG 361
I + + R+L G D + +W + R A + C +++D +G
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 362 SDDGSIELWS 371
S D +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H + A+ D SAS+DG ++ WD + V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
+S ++ A + G Y+A GGLD +++ + +E + GH G +SC
Sbjct: 94 ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
F +++ + S D T +W+ E +T GH +V+++ R+ G D S
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
+LW V E R F S + CF N + F +GSDD + L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 14/190 (7%)
Query: 188 VSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247
SSG LW E ++ G +++L+++ D R SG D LW
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTG-------DVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
D R Q F GH ++ + F + +GS D T ++++ + T + H + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNII 270
Query: 308 LTIDCL---RKERVLTVGRDR-SMQLWKVPEESRLVFRAPASSLECCCFISND--EFLSG 361
I + + R+L G D + +W + R A + C +++D +G
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 362 SDDGSIELWS 371
S D +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H + A+ D SAS+DG ++ WD + V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------- 93
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
+S ++ A + G Y+A GGLD +++ + +E + GH G +SC
Sbjct: 94 ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
F +++ + S D T +W+ E +T GH +V+++ R+ G D S
Sbjct: 150 RFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
+LW V E R F S + CF N + F +GSDD + L+ L
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 14/190 (7%)
Query: 188 VSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247
SSG LW E ++ G +++L+++ D R SG D LW
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTG-------DVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
D R Q F GH ++ + F + +GS D T ++++ + T + H + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNII 270
Query: 308 LTIDCL---RKERVLTVGRDR-SMQLWKVPEESRLVFRAPASSLECCCFISND--EFLSG 361
I + + R+L G D + +W + R A + C +++D +G
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 362 SDDGSIELWS 371
S D +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H + A+ D SAS+DG ++ WD + V +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--------------- 104
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCL 268
+S ++ A + G Y+A GGLD +++ + +E + GH G +SC
Sbjct: 105 ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 160
Query: 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSM 327
F +++ + S D T +W+ E +T GH +V+++ R+ G D S
Sbjct: 161 RFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 328 QLWKVPE-ESRLVFRAPASSLECCCFISN-DEFLSGSDDGSIELWSL 372
+LW V E R F S + CF N + F +GSDD + L+ L
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 14/190 (7%)
Query: 188 VSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247
SSG LW E ++ G +++L+++ D R SG D LW
Sbjct: 170 TSSGDTTCALWDIETGQQTTTFTGHTG-------DVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
D R Q F GH ++ + F + +GS D T ++++ + T + H + +
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNII 281
Query: 308 LTIDCL---RKERVLTVGRDR-SMQLWKVPEESRLVFRAPASSLECCCFISND--EFLSG 361
I + + R+L G D + +W + R A + C +++D +G
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 362 SDDGSIELWS 371
S D +++W+
Sbjct: 342 SWDSFLKIWN 351
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
PQ + + + + Y+ +G D+ I ++D+ ++ + GH G V L +
Sbjct: 112 PQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER---VLTVGRDRSMQ 328
G L SGS DRTV++W+ + GH S V +D + + ++T RD ++
Sbjct: 172 HG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 329 LWKVPEESR-----------LVFRAPASSLECCCFI------------SNDEFLSGSDDG 365
+WK+P+ES LVF P + + + +SGS D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDN 290
Query: 366 SIELWSLLRKKPVYIV 381
++ +W + + K +YI+
Sbjct: 291 TLIVWDVAQXKCLYIL 306
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Query: 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV 286
VS G + SG D + +WD + + GH + + S S D T+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 287 KIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR-LVFRAPAS 345
+IW+ E+ TL GH + V + L + +++ D S++ W + SR +
Sbjct: 335 RIWDLENGELXYTLQGHTALVGLLR-LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 393
Query: 346 SLECCCFISNDEFLSGSDDGSIELWSLLRKKPVY--IVKNA 384
S ++S++ +SGS++ +++L K V+ I+K+A
Sbjct: 394 SAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDA 433
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
PQ + + + + Y+ +G D+ I ++D+ ++ + GH G V L +
Sbjct: 112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER---VLTVGRDRSMQ 328
G L SGS DRTV++W+ + GH S V +D + + ++T RD ++
Sbjct: 172 HG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 329 LWKVPEESR-----------LVFRAPASSLECCCFI------------SNDEFLSGSDDG 365
+WK+P+ES LVF P + + + +SGS D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 290
Query: 366 SIELWSLLRKKPVYIV 381
++ +W + + K +YI+
Sbjct: 291 TLIVWDVAQMKCLYIL 306
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Query: 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV 286
VS G + SG D + +WD + + GH + + S S D T+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 287 KIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR-LVFRAPAS 345
+IW+ E+ + TL GH + V + L + +++ D S++ W + SR +
Sbjct: 335 RIWDLENGELMYTLQGHTALVGLLR-LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 393
Query: 346 SLECCCFISNDEFLSGSDDGSIELWSLLRKKPVY--IVKNA 384
S ++S++ +SGS++ +++L K V+ I+K+A
Sbjct: 394 SAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDA 433
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL-------W-----PSEEVLK 205
H+ V +V +S S+S D I WD+ +GK +K + W P + L
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138
Query: 206 S--HGAK---------DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH 254
+ H K + + K IL++A S DG+YLASG +D I+++D +
Sbjct: 139 TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198
Query: 255 IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310
+ GH P+ LTF + L + S D +KI++ + TL GH S VL +
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 7/155 (4%)
Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSC--LTFRQGTSELFSG 280
++++ +S AS LD HI LWD + I++ GPV L F + L +G
Sbjct: 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATG 140
Query: 281 SFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSMQLWKVPEESRL- 338
+ V I+ E +L +L+I + L G D + ++ + L
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 200
Query: 339 VFRAPASSLECCCFISNDEFL-SGSDDGSIELWSL 372
A + F + + L + SDDG I+++ +
Sbjct: 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 25/238 (10%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H V+ VALS + + SAS D S+ W++ +G+
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQC------------------- 101
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFR 271
Q + +K +L++A S D R + SGG D + +W+ + + H + H VSC+ F
Sbjct: 102 QYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFS 161
Query: 272 QGTSE--LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRS--M 327
+ SG +D VK+W+ ++ L GH + V ++ + + L D+
Sbjct: 162 PSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT-VSPDGSLCASSDKDGVA 220
Query: 328 QLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAH 385
+LW + + L A + + CF N ++ + + I ++ L K + + H
Sbjct: 221 RLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEH 278
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 25/245 (10%)
Query: 155 LLKHRQSVTAVALS---EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
L HR VT++A E +K S S+D ++L W + + S E S+G
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRH------SSEC--SYGL-- 58
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
P R S + +A+S++G + S D + LW+ + + F GH V + F
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR------KERVLTVGRDR 325
++ SG D +++WN + + G ++ + C+R +++ G D
Sbjct: 119 PDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTD--WVSCVRFSPSLDAPVIVSGGWDN 176
Query: 326 SMQLWKVPEESRLV--FRAPASSLECCCFISNDEFLSGSD-DGSIELWSLLRKKPVYIVK 382
+++W + RLV + + + + + SD DG LW L + + + +
Sbjct: 177 LVKVWDL-ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 383 NAHPL 387
P+
Sbjct: 236 AGAPI 240
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 28/148 (18%)
Query: 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG 214
L H VT+V +S D S S+ KDG WD++ G E L A P
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG----------EALSEMAAGAP-- 239
Query: 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGP------VSC 267
+ S RY ++ I ++D ++ I + P H+G
Sbjct: 240 ---------INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVS 290
Query: 268 LTFRQGTSELFSGSFDRTVKIWNAEDRA 295
+ + S L+SG D +++W + A
Sbjct: 291 IAWSADGSTLYSGYTDNVIRVWGVSENA 318
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 41/198 (20%)
Query: 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQ 213
+L H Q + ++ K S S D ++ WD+ +G+ L + V
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT--------- 210
Query: 214 GRATKQSKHILALAVS-SDGRYLASGGLDRHIHLWDT-------RIQEHIQAFPGHRGPV 265
+AVS DG+Y+A+G LDR + +WD+ R+ ++ GH+ V
Sbjct: 211 -----------TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Query: 266 SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS------------TLFGHQSEVLTIDCL 313
+ F + + SGS DR+VK+WN ++ S T GH+ VL++
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 319
Query: 314 RK-ERVLTVGRDRSMQLW 330
+ E +L+ +DR + W
Sbjct: 320 QNDEYILSGSKDRGVLFW 337
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAK 210
E L H V V S +D + + + + + VS G V L S++ S K
Sbjct: 56 ELHKSLDHTSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARL--SDD---SAANK 109
Query: 211 DPQGRATKQSK----HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS 266
DP+ T S +I ++ S DG++LA+G DR I +WD ++ + GH +
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 267 CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGR-D 324
L + +L SGS DRTV+IW+ S + V T+ + + + G D
Sbjct: 170 SLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 228
Query: 325 RSMQLWKVPEESRLVFRAPA---------SSLECCCFISNDE-FLSGSDDGSIELWSL 372
R++++W E LV R + S+ F + + +SGS D S++LW+L
Sbjct: 229 RAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK 192
+ H+ V +VA +++D S SKD +L WD SG
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 30/223 (13%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
H ++A + + D + +AS DG+ WDV SG+ + + HGA
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-------QSFHGHGAD------- 198
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL 277
L LA S G SGG D+ +WD R + +QAF H V+ + +
Sbjct: 199 ---VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF 255
Query: 278 FSGSFDRTVKIWN--AEDRAYI----STLFGHQSEVLTIDCLRKERVLTVG-RDRSMQLW 330
SGS D T ++++ A+ I S +FG S +D R+L G D ++ +W
Sbjct: 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASS----VDFSLSGRLLFAGYNDYTINVW 311
Query: 331 KVPEESRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWS 371
V + SR+ + +S D F SGS D ++ +W+
Sbjct: 312 DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 36/277 (12%)
Query: 121 AKILQQEQLEESGRVRRVIASRV-QKPEATDEF-----RVLLKHRQSVTAVALSEDDSKG 174
A+ L+ + EE ++ V +V ++ EA +F R L H V + +D +
Sbjct: 20 AESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRI 79
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
S+S+DG ++ WD S K H P ++A A + G
Sbjct: 80 VSSSQDGKVIVWD------------SFTTNKEHAVTMP-------CTWVMACAYAPSGCA 120
Query: 235 LASGGLDRHIHLW------DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI 288
+A GGLD ++ + + ++ H +S +F ++ + S D T +
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180
Query: 289 WNAEDRAYISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPE-ESRLVFRAPA 344
W+ E + + GH ++VL +D E ++ G D+ +W + + F
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 345 SSLECCCFI-SNDEFLSGSDDGSIELWSLLRKKPVYI 380
S + + S D F SGSDD + L+ L + V I
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 42/238 (17%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
HR VT V S SAS+D +I WD +G E LK H
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGH---------- 149
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL 277
+ + ++ G+ LAS D I LWD + E I+ GH VS ++ +
Sbjct: 150 --TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKV-PEE 335
S S D+T+K+W + + T GH+ V + + ++ + D+++++W V +E
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267
Query: 336 SRLVFRAPASSLECCCFISNDEF---------------------LSGSDDGSIELWSL 372
+ R +EC + + LSGS D +I++W +
Sbjct: 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 44/224 (19%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL-----W-----PSE 201
R + H +V++V++ + SAS+D +I W+V +G VK W P++
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 202 E-VLKSHGAKDPQGR----ATKQSK-------HI--------------LALAVSSD---- 231
+ L + + D R ATK+ K H+ ++ A S+
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304
Query: 232 ---GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI 288
G +L SG D+ I +WD + GH V + F G + S + D+T+++
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 289 WNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR-DRSMQLWK 331
W+ +++ + TL H+ V ++D + + G D+++++W+
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 257 AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE 316
A GHR PV+ + F S + S S D T+K+W+ E + TL GH V I
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 317 RVL-TVGRDRSMQLWKVP--EESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSL 372
++L + D +++LW E R + + + D +S S D +I++W +
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 25/216 (11%)
Query: 121 AKILQQEQLEESGRVRR--VIASRVQKPEATDEFRVLLK-HRQSVTAVALSEDDSKGFSA 177
+++ QQ +L+ V + + K T+ R++++ H +V SED + S
Sbjct: 580 SEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASC 639
Query: 178 SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237
D ++ + +G E++L+ +D +L A S+D R++A+
Sbjct: 640 GADKTLQVFKAETG---------EKLLEIKAHEDE----------VLCCAFSTDDRFIAT 680
Query: 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF--SGSFDRTVKIWNAEDRA 295
+D+ + +W++ E + + H V+C F + L +GS D +K+W+ +
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Query: 296 YISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLW 330
+T+FGH + V +++L + D +++LW
Sbjct: 741 CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV 286
S DG+ +AS G D+ + ++ E + H V C F + + S D+ V
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 287 KIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR---DRSMQLWKVPE-ESRLVFRA 342
KIWN+ + T H +V L + D ++LW + + E R
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG 747
Query: 343 PASSLECCCFISNDEFL-SGSDDGSIELW 370
+S+ C F +D+ L S S DG+++LW
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV-KYLWPS 200
+V K E ++ + H V A S DD + S D + W+ +G+ V Y S
Sbjct: 646 QVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS 705
Query: 201 EEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG 260
E+V H T S H+L LA+G D + LWD +E G
Sbjct: 706 EQVNCCH--------FTNSSHHLL----------LATGSSDCFLKLWDLNQKECRNTMFG 747
Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNA 291
H V+ F L S S D T+K+W+A
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 102/262 (38%), Gaps = 46/262 (17%)
Query: 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK-----GVKYLW-----PSEE-- 202
+ H SV S DD S S DG++ WD +S VK + P E+
Sbjct: 745 MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDME 804
Query: 203 -VLKSHGAKDPQGRATKQSKH-ILALAVSSDG---------------------RYLASGG 239
++K R +K+ I + + G +LA
Sbjct: 805 VIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 240 LDRH-IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298
L ++ + LW+T + + GH V + F S + S D+T+++W + S
Sbjct: 865 LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNS 924
Query: 299 TLFGHQSEVLTIDCLRKER---VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN 355
+ Q +D + +E VL V R +QL + + + + + CCC +
Sbjct: 925 AVMLKQE----VDVVFQENEVMVLAVDHIRRLQL--INGRTGQIDYLTEAQVSCCCLSPH 978
Query: 356 DEFLS-GSDDGSIELWSLLRKK 376
++++ G ++G+IE+ L+ +
Sbjct: 979 LQYIAFGDENGAIEILELVNNR 1000
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 22/195 (11%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
F+ +H+++V + + D+ S+S D I W+ K + L+ H
Sbjct: 1002 FQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--------FLRGHQETV 1053
Query: 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271
R K S+ L S D + +W+ + F H+G V
Sbjct: 1054 KDFRLLKNSR-------------LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDIS 1100
Query: 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDR-SMQLW 330
++ S S D+T KIW+ + + L GH V +L G D +++W
Sbjct: 1101 HDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Query: 331 KVPEESRLVFRAPAS 345
V L AP S
Sbjct: 1161 NVSNGELLHLCAPLS 1175
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA 209
D+ L H+++V L ++ S+ S S DG++ W++ +G E+ H
Sbjct: 1041 DKCIFLRGHQETVKDFRLLKN-SRLLSWSFDGTVKVWNIITGN-------KEKDFVCH-- 1090
Query: 210 KDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLT 269
QG +L+ +S D +S D+ +W + + GH G V C
Sbjct: 1091 ---QGT-------VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSA 1140
Query: 270 FRQGTSELFSGSFDRTVKIWNAED 293
F ++ L +G + ++IWN +
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSN 1164
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 36/243 (14%)
Query: 154 VLLKHRQSVTAVAL------SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSH 207
+L H VT++ +ED S S+D +++ W + + Y + L H
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 208 GAKDPQGRATKQSKHILA-LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS 266
H ++ LA+S + + S D+ + LWD R + F GH+ V
Sbjct: 76 -------------NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122
Query: 267 CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL------- 319
+ F ++ S +R +K+WN S+ ++ + C+R ++
Sbjct: 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA-EKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 320 -------TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWS 371
+VG D +++W + R F+A S++ N +++ +G D + +W
Sbjct: 182 PFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Query: 372 LLR 374
+L
Sbjct: 242 ILN 244
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 50/297 (16%)
Query: 118 SLVAKILQQEQ-----LEESGRVRRVIASRVQKPEATDEF----RVLLKHRQSVTAVALS 168
S+VA Q+E L R + V+ ++ + E F + L H V+ +ALS
Sbjct: 26 SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS 85
Query: 169 EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228
+++ S+S D ++ WD+ +G K R + ++A
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYK-------------------RFVGHQSEVYSVAF 126
Query: 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAF--PGHRGPVSCLTFR---------QGTSEL 277
S D R + S G +R I LW+ + + H VSC+ + Q +
Sbjct: 127 SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 278 F-SGSFDRTVKIWNAEDRAYISTLFGHQSEV--LTIDCLRKERVLTVGRDRSMQLWKVPE 334
F S +D +K+WN + T H+S V L+I K + T G+D+ + +W +
Sbjct: 187 FASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILN 244
Query: 335 ES--RLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR--KKPVYIVKNAHPL 387
+ + F A S++ F ++++ D +++++L+ K PV ++ A P+
Sbjct: 245 LTYPQREFDA-GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIE-AEPI 299
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV 286
S DG+ +AS G D+ + ++ E + H V C F S + + S D+ V
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 287 KIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL---TVGRDRSMQLWKVPE-ESRLVFRA 342
KIW++ + T H +V K L T D ++LW + + E R
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 343 PASSLECCCFISNDEFL-SGSDDGSIELWSL 372
+S+ C F +DE L S S DG++ LW +
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 128 QLEESGRVRRVIASRVQKPEATDEFRVLLK-HRQSVTAVALSEDDSKGFSASKDGSILHW 186
Q ++ G R+ + K + R++++ H +V S+D + S D ++ +
Sbjct: 590 QAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 649
Query: 187 DVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHL 246
+G E++L +D +L A SSD Y+A+ D+ + +
Sbjct: 650 KAETG---------EKLLDIKAHED----------EVLCCAFSSDDSYIATCSADKKVKI 690
Query: 247 WDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF--SGSFDRTVKIWNAEDRAYISTLFGHQ 304
WD+ + + + H V+C F ++ L +GS D +K+W+ + +T+FGH
Sbjct: 691 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 750
Query: 305 SEVLTIDCLRKERVL-TVGRDRSMQLWKV 332
+ V + +L + D +++LW V
Sbjct: 751 NSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHG 208
T ++ L H+++V L +D S+ S S DG++ W+V +G+ E H
Sbjct: 1041 TGDYVFLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGR-------IERDFTCH- 1091
Query: 209 AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCL 268
QG +L+ A+SSD +S D+ +W + + GH G V C
Sbjct: 1092 ----QGT-------VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1140
Query: 269 TFRQGTSELFSGSFDRTVKIWNAED 293
F L +G + ++IWN D
Sbjct: 1141 AFSLDGILLATGDDNGEIRIWNVSD 1165
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 97/258 (37%), Gaps = 46/258 (17%)
Query: 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK-----GVKYLWPSEE------- 202
+ H SV S DD S S DG++ WDV S VK + S E
Sbjct: 746 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 805
Query: 203 --VLKSHGAKDPQGRATKQSKHILALAVSSDG---------------------RYLASGG 239
V + D +L + + G +LA
Sbjct: 806 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865
Query: 240 LDRH-IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298
L ++ + LW+ + + GH V + F S + S D+T+++W + S
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 925
Query: 299 TLFGHQSEVLTIDCLRKER---VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN 355
+ Q ID + +E VL V R +QL + ++ + P + + CCC +
Sbjct: 926 AIVLKQE----IDVVFQENETMVLAVDNIRGLQL--IAGKTGQIDYLPEAQVSCCCLSPH 979
Query: 356 DEFLS-GSDDGSIELWSL 372
E+++ G +DG+I++ L
Sbjct: 980 LEYVAFGDEDGAIKIIEL 997
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 97/249 (38%), Gaps = 29/249 (11%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWD---------VSSGKGVKYLWPSEE--VLKS 206
H V V S D S +AS D +I W+ + + + ++ E VL
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 947
Query: 207 HGAKDPQGRATKQSK-------HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP 259
+ Q A K + + +S Y+A G D I + + +
Sbjct: 948 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1007
Query: 260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319
GH+ V + F L S S D +++WN + Y+ L HQ V L+ R+L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL 1066
Query: 320 TVGRDRSMQLWKV----PEESRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLL 373
+ D ++++W V E + S C IS+D +F S S D + ++WS
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLS----CAISSDATKFSSTSADKTAKIWSFD 1122
Query: 374 RKKPVYIVK 382
P++ +K
Sbjct: 1123 LLSPLHELK 1131
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 22/192 (11%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
H+++V + + D S+S+D I W+ +G V L++H R
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--------FLQAHQETVKDFRLL 1060
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL 277
+ S+ L S D + +W+ + F H+G V ++
Sbjct: 1061 QDSR-------------LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1107
Query: 278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDR-SMQLWKVPEES 336
S S D+T KIW+ + + + L GH V +L G D +++W V +
Sbjct: 1108 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Query: 337 RLVFRAPASSLE 348
L AP S E
Sbjct: 1168 LLHSCAPISVEE 1179
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV 286
S DG+ +AS G D+ + ++ E + H V C F S + + S D+ V
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 287 KIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL---TVGRDRSMQLWKVPE-ESRLVFRA 342
KIW++ + T H +V K L T D ++LW + + E R
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 343 PASSLECCCFISNDEFL-SGSDDGSIELWSL 372
+S+ C F +DE L S S DG++ LW +
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 128 QLEESGRVRRVIASRVQKPEATDEFRVLLK-HRQSVTAVALSEDDSKGFSASKDGSILHW 186
Q ++ G R+ + K + R++++ H +V S+D + S D ++ +
Sbjct: 583 QAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 642
Query: 187 DVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHL 246
+G E++L +D +L A SSD Y+A+ D+ + +
Sbjct: 643 KAETG---------EKLLDIKAHED----------EVLCCAFSSDDSYIATCSADKKVKI 683
Query: 247 WDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF--SGSFDRTVKIWNAEDRAYISTLFGHQ 304
WD+ + + + H V+C F ++ L +GS D +K+W+ + +T+FGH
Sbjct: 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743
Query: 305 SEVLTIDCLRKERVL-TVGRDRSMQLWKV 332
+ V + +L + D +++LW V
Sbjct: 744 NSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHG 208
T ++ L H+++V L +D S+ S S DG++ W+V +G+ E H
Sbjct: 1034 TGDYVFLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGR-------IERDFTCH- 1084
Query: 209 AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCL 268
QG +L+ A+SSD +S D+ +W + + GH G V C
Sbjct: 1085 ----QGT-------VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1133
Query: 269 TFRQGTSELFSGSFDRTVKIWNAED 293
F L +G + ++IWN D
Sbjct: 1134 AFSLDGILLATGDDNGEIRIWNVSD 1158
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 97/258 (37%), Gaps = 46/258 (17%)
Query: 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK-----GVKYLWPSEE------- 202
+ H SV S DD S S DG++ WDV S VK + S E
Sbjct: 739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798
Query: 203 --VLKSHGAKDPQGRATKQSKHILALAVSSDG---------------------RYLASGG 239
V + D +L + + G +LA
Sbjct: 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Query: 240 LDRH-IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298
L ++ + LW+ + + GH V + F S + S D+T+++W + S
Sbjct: 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918
Query: 299 TLFGHQSEVLTIDCLRKER---VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN 355
+ Q ID + +E VL V R +QL + ++ + P + + CCC +
Sbjct: 919 AIVLKQE----IDVVFQENETMVLAVDNIRGLQL--IAGKTGQIDYLPEAQVSCCCLSPH 972
Query: 356 DEFLS-GSDDGSIELWSL 372
E+++ G +DG+I++ L
Sbjct: 973 LEYVAFGDEDGAIKIIEL 990
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 97/249 (38%), Gaps = 29/249 (11%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWD---------VSSGKGVKYLWPSEE--VLKS 206
H V V S D S +AS D +I W+ + + + ++ E VL
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940
Query: 207 HGAKDPQGRATKQSK-------HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP 259
+ Q A K + + +S Y+A G D I + + +
Sbjct: 941 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000
Query: 260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319
GH+ V + F L S S D +++WN + Y+ L HQ V L+ R+L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL 1059
Query: 320 TVGRDRSMQLWKV----PEESRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLL 373
+ D ++++W V E + S C IS+D +F S S D + ++WS
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLS----CAISSDATKFSSTSADKTAKIWSFD 1115
Query: 374 RKKPVYIVK 382
P++ +K
Sbjct: 1116 LLSPLHELK 1124
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 22/192 (11%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
H+++V + + D S+S+D I W+ +G V L++H R
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--------FLQAHQETVKDFRLL 1053
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL 277
+ S+ L S D + +W+ + F H+G V ++
Sbjct: 1054 QDSR-------------LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1100
Query: 278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDR-SMQLWKVPEES 336
S S D+T KIW+ + + + L GH V +L G D +++W V +
Sbjct: 1101 SSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Query: 337 RLVFRAPASSLE 348
L AP S E
Sbjct: 1161 LLHSCAPISVEE 1172
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
VL HR + +V ++D + S + + W+V SG +++ E S A++
Sbjct: 142 LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201
Query: 212 PQGRATKQSKHILALAVS--SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLT 269
G + L + V D +++ G I ++ + GH GP+S L
Sbjct: 202 HSGDGS------LGVDVEWVDDDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPISVLE 254
Query: 270 FRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQL 329
F L S S D T++IW+ + + +GH +++ + ++V++ D S++L
Sbjct: 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRL 314
Query: 330 WKVPEESRLVF 340
W + + + L
Sbjct: 315 WSLKQNTLLAL 325
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 71/172 (41%), Gaps = 22/172 (12%)
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSEL 277
K + + LA S DG + +G + + LW+ + + HR P+ + + + + +
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 278 FSGSFDRTVKIWNAEDRAYISTL---------------FGHQSEVLTIDCLRKERVLTVG 322
S + +WN + G S + ++ + ++ + G
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
Query: 323 RDRSMQLWKVPEES---RLV-FRAPASSLECCCFISNDEFLSGSDDGSIELW 370
++ ++++ E++ +L+ P S LE +N LS SDDG++ +W
Sbjct: 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFND--TNKLLLSASDDGTLRIW 274
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 226 LAVSSDGRYLASGGLDRHIHLW----DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS 281
LA + G LAS G DR I +W D+ I + + + GH+ V + + + L S S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASAS 80
Query: 282 FDRTVKIW--NAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEE 335
FD T IW N +D ++TL GH++EV ++ +L T RD+S+ +W+V EE
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFS 279
+ ++A + G LA+ D+ + +W+ + E + H V + + L S
Sbjct: 108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167
Query: 280 GSFDRTVKIWNAEDRAYI--STLFGHQSEV--LTIDCLRKERVLTVGRDRSMQLWK--VP 333
S+D TVK++ E+ ++ +TL GH+S V L D +R+ + DR++++W+ +P
Sbjct: 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLP 226
Query: 334 -EESRLVFRAPASSLECCCFIS 354
E + S +C C +S
Sbjct: 227 GNEQGVACSGSDPSWKCICTLS 248
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 21/145 (14%)
Query: 150 DEFRVLLK---HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKS 206
D+F + H V +VA + + + S+D S+ W+V + + VL S
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV----SVLNS 148
Query: 207 HGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI--QAFPGHRGP 264
H T+ KH++ LAS D + L+ + + GH
Sbjct: 149 H---------TQDVKHVV---WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST 196
Query: 265 VSCLTFRQGTSELFSGSFDRTVKIW 289
V L F L S S DRTV+IW
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFR-QGTSELFS 279
+I ++AV Y+ SG D + LW+ + Q F GH V C+ F + S S
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
G DRTVK+W+ + + G + V +D K ++T D ++++W +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
S + S++ F +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
D Y+ + D I +WD + + + GH VS F + SGS D T+KIWN
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 291 AEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRS 326
+ + E+ L VG +RS
Sbjct: 257 SS-------------------TYKVEKTLNVGLERS 273
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292
++ G D I +++ E + F H + + + SGS D TVK+WN E
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 293 DRAYISTLF-GHQSEVLTIDCLRKE-RVLTVG-RDRSMQLWKVPEESRLVFRAP-----A 344
+ + F GH+ V+ + K+ G DR++++W + + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 345 SSLECCCFISNDEFLSGSDDGSIELWSLLRKKPV 378
+ ++ ++ SDD +I++W K V
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 130 EESGRVRRVIASRVQKPEATDEFRVLL-------------KHRQSVTAVALSEDDSKGFS 176
E R + IA + +D+FR+ + H + ++A+ S
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-SDGRYL 235
S D ++ W+ + W E+ + H ++ +A + D
Sbjct: 115 GSDDLTVKLWNWENN------WALEQTFEGH------------EHFVMCVAFNPKDPSTF 156
Query: 236 ASGGLDRHIHLWDT-RIQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAE 292
ASG LDR + +W + + G V+ + + + + + S D T+KIW+ +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 293 DRAYISTLFGHQSEV 307
++ ++TL GH S V
Sbjct: 217 TKSCVATLEGHMSNV 231
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFR-QGTSELFS 279
+I ++AV Y+ SG D + LW+ + Q F GH V C+ F + S S
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
G DRTVK+W+ + + G + V +D K ++T D ++++W +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
S + S++ F +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
D Y+ + D I +WD + + + GH VS F + SGS D T+KIWN
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 291 AEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRS 326
+ + E+ L VG +RS
Sbjct: 257 SS-------------------TYKVEKTLNVGLERS 273
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292
++ G D I +++ E + F H + + + SGS D TVK+WN E
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 293 DRAYISTLF-GHQSEVLTIDCLRKE-RVLTVG-RDRSMQLWKVPEESRLVFRAPASSLEC 349
+ + F GH+ V+ + K+ G DR++++W + +S F
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG-QSTPNFTLTTGQERG 186
Query: 350 CCFI------SNDEFLSGSDDGSIELWSLLRKKPV 378
++ ++ SDD +I++W K V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 35/191 (18%)
Query: 134 RVRRVIASRVQKPEATDEFRVLL-------------KHRQSVTAVALSEDDSKGFSASKD 180
R + IA + +D+FR+ + H + ++A+ S S D
Sbjct: 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-SDGRYLASGG 239
++ W+ + W E+ + H ++ +A + D ASG
Sbjct: 119 LTVKLWNWENN------WALEQTFEGH------------EHFVMCVAFNPKDPSTFASGC 160
Query: 240 LDRHIHLWDT-RIQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAY 296
LDR + +W + + G V+ + + + + + S D T+KIW+ + ++
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 297 ISTLFGHQSEV 307
++TL GH S V
Sbjct: 221 VATLEGHMSNV 231
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQGTSELF-S 279
+I ++AV Y+ SG D + LW+ + Q F GH V C+ F F S
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
G DRTVK+W+ + + G + V +D K ++T D ++++W +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
S + S++ F +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
D Y+ + D I +WD + + + GH VS F + SGS D T+KIWN
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 291 A 291
+
Sbjct: 257 S 257
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 8/153 (5%)
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
++ G D I +++ E + F H + + + SGS D TVK+WN E+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 294 RAYISTLF-GHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAP-----AS 345
+ F GH+ V+ + K+ + DR++++W + + + +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 346 SLECCCFISNDEFLSGSDDGSIELWSLLRKKPV 378
++ ++ SDD +I++W K V
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 130 EESGRVRRVIASRVQKPEATDEFRVLL-------------KHRQSVTAVALSEDDSKGFS 176
E R + IA + +D+FR+ + H + ++A+ S
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-SDGRYL 235
S D ++ W+ + W E+ + H ++ +A + D
Sbjct: 115 GSDDLTVKLWNWENN------WALEQTFEGH------------EHFVMCVAFNPKDPSTF 156
Query: 236 ASGGLDRHIHLWDT-RIQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAE 292
ASG LDR + +W + + G V+ + + + + + S D T+KIW+ +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 293 DRAYISTLFGHQSEV 307
++ ++TL GH S V
Sbjct: 217 TKSCVATLEGHMSNV 231
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQGTSELF-S 279
+I ++AV Y+ SG D + LW+ + Q F GH V C+ F F S
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 280 GSFDRTVKIWN-AEDRAYISTLFGHQSEVLTIDCL---RKERVLTVGRDRSMQLWKVPEE 335
G DRTVK+W+ + + G + V +D K ++T D ++++W +
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 336 SRL-VFRAPASSLECCCFISN-DEFLSGSDDGSIELWS 371
S + S++ F +SGS+DG++++W+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
D Y+ + D I +WD + + + GH VS F + SGS D T+KIWN
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 291 A 291
+
Sbjct: 257 S 257
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 8/153 (5%)
Query: 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293
++ G D I +++ E + F H + + + SGS D TVK+WN E+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 294 RAYISTLF-GHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAP-----AS 345
+ F GH+ V+ + K+ + DR++++W + + + +
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 346 SLECCCFISNDEFLSGSDDGSIELWSLLRKKPV 378
++ ++ SDD +I++W K V
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 130 EESGRVRRVIASRVQKPEATDEFRVLL-------------KHRQSVTAVALSEDDSKGFS 176
E R + IA + +D+FR+ + H + ++A+ S
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-SDGRYL 235
S D ++ W+ + W E+ + H ++ +A + D
Sbjct: 115 GSDDLTVKLWNWENN------WALEQTFEGH------------EHFVMCVAFNPKDPSTF 156
Query: 236 ASGGLDRHIHLWDT-RIQEHIQAFPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAE 292
ASG LDR + +W + + G V+ + + + + + S D T+KIW+ +
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Query: 293 DRAYISTLFGHQSEV 307
++ ++TL GH S V
Sbjct: 217 TKSCVATLEGHMSNV 231
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 225 ALAVSSDGRYLASGGLDRHIH---LWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS 281
++ S+ L GG D I+ L+ T ++ + GH+G V L+F+ G + SGS
Sbjct: 64 SVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGV--VISGS 121
Query: 282 FDRTVKIWNAEDRAYISTLFGHQSEVLT--IDCLRKERVLTVGRDRSMQLWKVPEESRLV 339
+D+T K+W Y L H + V + + + LT D++++LW+ + +
Sbjct: 122 WDKTAKVWKEGSLVY--NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTF 179
Query: 340 FRAPASSLECCCFISNDEFLSGSDDGSIEL 369
+ + + F+S S+DG I+L
Sbjct: 180 SGIHNDVVRHLAVVDDGHFISCSNDGLIKL 209
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289
S+ ++L + D+ I LW + I+ F G V S S D +K+
Sbjct: 154 SENKFLTASA-DKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV 210
Query: 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES-RLVFRAPASSLE 348
+ + T GH+S V I L +++ G DR++++W S + V PA S+
Sbjct: 211 DXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIW 270
Query: 349 CCCFISNDEFLSGSDDGSIELWS 371
SN + + GS D + ++S
Sbjct: 271 SVDCXSNGDIIVGSSDNLVRIFS 293
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Query: 197 LWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT----RIQ 252
+W EE D + +A S+DG YLA+ D+ + +W+T
Sbjct: 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY--ISTLFGHQSEVLTI 310
E I H V + + + L S S+D TV+IW D + ++ L GH+ V +
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203
Query: 311 DCLRKE---RVLTVGRDRSMQLWK 331
D + E R+ + D ++++WK
Sbjct: 204 DFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 235 LASGGLDRHIHL----WDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290
LA+G DR I L +D + H+ + + +R TS L +GSFD TV IW
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 291 AE---DRAY----ISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPE 334
E DR + ++ + GH++EV + L T RD+S+ +W+ E
Sbjct: 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA 209
D ++ H V VA S D + S+D S+ W+ G +Y VL+ H
Sbjct: 98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES-GEEY--ECISVLQEH-- 152
Query: 210 KDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ--EHIQAFPGHRGPVSC 267
++ KH++ + LAS D + +W E + GH G V
Sbjct: 153 -------SQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202
Query: 268 LTF--RQGTSELFSGSFDRTVKIW 289
F +G L SGS D TV++W
Sbjct: 203 SDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 37/238 (15%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R L H V ++ + + + SAS+DG ++ W+ + + K+H K
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ------------KTHAIK-- 105
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH-------IQAFPGHRG-P 264
++ A + +G+ +A GGLD +++ Q + GH+G
Sbjct: 106 -----LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 265 VSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-----FGHQSEV--LTIDCLRKER 317
SC + L +GS D+T +W+ IS GH ++V L+I+ L
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 318 VLTVGRDRSMQLWKVPEESRLV--FRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372
++ D +++LW + SR V + + F + + F +GSDDG+ L+ +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 153 RVLLKHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKD 211
RVL H+ ++ D +++ + S D + + WDV++G+ + G++
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF----------GSEF 200
Query: 212 PQGRATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLT 269
P G + +L+L+++S + SG D + LWD RI ++ + GH G ++ +
Sbjct: 201 PSG----HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK 256
Query: 270 FRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307
F +GS D T ++++ GHQ +V
Sbjct: 257 FFPDGQRFGTGSDDGTCRLFDMRT--------GHQLQV 286
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
R H + +V D + + S DG+ +D+ +G ++ ++P
Sbjct: 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY-----------NREP 291
Query: 213 QGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF----PGHRGPVSCL 268
R + + ++A S GR L +G + ++WDT + E + H G +SCL
Sbjct: 292 D-RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 269 TFRQGTSELFSGSFDRTVKIW 289
S L +GS+D+ +KIW
Sbjct: 351 GLSSDGSALCTGSWDKNLKIW 371
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 46/211 (21%)
Query: 208 GAKDPQGRA--TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV 265
A P+ +A T + ALA+S D + S D +I +WD Q ++ F GH
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186
Query: 266 SCLTFRQGTSELFSGSFDRTVKIWN------AEDRAYISTLFG----------------- 302
SC+ ++L++G D TV+ W+ + + S +F
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS 246
Query: 303 -----------------HQSEVLTID-CLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA 344
H+S VL++ + ++ G+D + W+ P + +F++
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQSKE 305
Query: 345 SSLECCCFISNDE--FLSGSDDGSIELWSLL 373
SS C IS D+ ++GS D ++ ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Query: 202 EVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAF 258
V K GA + + I ++A S++G +L + R + + H ++
Sbjct: 473 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 532
Query: 259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---DRAYISTLFGHQSEVLTIDCLRK 315
H V+C+++ L +GS D +V +WN D I S V ++ L +
Sbjct: 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 592
Query: 316 ERVLTVGRDRSMQLWKVP 333
+++ G+D +++ W VP
Sbjct: 593 TTIVSAGQDSNIKFWNVP 610
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 112/281 (39%), Gaps = 47/281 (16%)
Query: 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG------------- 191
PE +V H +++TA++ S D FSA +G I WD+S+G
Sbjct: 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369
Query: 192 --------KGVKYLWPSEEVLK-----SHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238
KG + ++ LK G + A K S L LAVS+DG +A
Sbjct: 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVA 428
Query: 239 GLDRHIHLWD-TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIW--NAEDRA 295
+HI ++ ++ E ++ SC+ + G D V ++ + +
Sbjct: 429 ACYKHIAIYSHGKLTEVPISYNS-----SCVALSNDKQFVAVGGQDSKVHVYKLSGASVS 483
Query: 296 YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQL--WKVPEESRLV----FRAPASSLEC 349
+ T+ H +E+ ++ V D+S ++ + V L + + + C
Sbjct: 484 EVKTIV-HPAEITSV-AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 541
Query: 350 CCFI-SNDEFLSGSDDGSIELWSLLRKK--PVYIVKNAHPL 387
+ N +GS D S+ +W++ + P+ I+K AH +
Sbjct: 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI-IIKGAHAM 581
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVK--------------YLWPSE 201
+ H SV + S D +K SAS D +I W+V++ K K +W ++
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TK 294
Query: 202 EVLKSHGAK------DPQGRATKQ-----SKHILALAVSSDGRYLASGGLDRHIHLWDTR 250
+ L S A +P+ + Q +K I AL+ S+DG+ L S + HI+ WD
Sbjct: 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354
Query: 251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI 288
+ FP + +LF+ S+D +K+
Sbjct: 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP-------GHRGPVSCLTF 270
+ +K + ++ + DG AS G D I L++ F H G V LT+
Sbjct: 188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 271 RQGTSELFSGSFDRTVKIWN 290
+++ S S D+T+KIWN
Sbjct: 248 SPDGTKIASASADKTIKIWN 267
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI--QAFPGHRGPV 265
T+ S S G Y ASG + ++ +WDT HI P GPV
Sbjct: 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 106
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE 276
T +S ++ ++ S DG +L+ G + + ++D Q ++ GH+ V CL++ +
Sbjct: 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHV-- 188
Query: 277 LFSGS-----FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQL 329
L SGS V+I N + I TL GH SEV + R + ++ + G D +Q+
Sbjct: 189 LSSGSRSGAIHHHDVRIANHQ----IGTLQGHSSEVCGL-AWRSDGLQLASGGNDNVVQI 243
Query: 330 W----KVPEESRLVFRAPASSLECCCFISNDEFLS---GSDDGSIELWS 371
W +P+ ++ A ++ C + SN L+ G+ D I W+
Sbjct: 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSN--LLATGGGTMDKQIHFWN 290
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
Query: 147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKS 206
E+ + R + H+ V LS + S S+ G+I H DV + +
Sbjct: 164 ESQTKLRTMAGHQARVGC--LSWNRHVLSSGSRSGAIHHHDVR--------------IAN 207
Query: 207 HGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS 266
H QG S + LA SDG LASGG D + +WD R H V
Sbjct: 208 HQIGTLQG----HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263
Query: 267 CLTFRQGTSELFS---GSFDRTVKIWNAEDRAYISTL-FGHQSEVLTIDCLRKERVLTVG 322
+ + S L + G+ D+ + WNA A ++T+ G Q L KE + T G
Sbjct: 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHG 323
Query: 323 -RDRSMQLW 330
D ++ +W
Sbjct: 324 FPDNNLSIW 332
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 30/145 (20%)
Query: 157 KHRQSVTAVALSEDDSKGFSA---SKDGSILHWDVSSGKGVK----------YLWP--SE 201
H +V AVA S + + D I W+ ++G V +W S+
Sbjct: 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSK 316
Query: 202 EVLKSHGAKD--------PQGRATKQ------SKHILALAVSSDGRYLASGGLDRHIHLW 247
E++ +HG D TKQ +L A+S DGR L++ D ++ W
Sbjct: 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Query: 248 DTRIQEHIQ-AFPGHRGPVSCLTFR 271
+H++ P + P S +T R
Sbjct: 377 RVYDGDHVKRPIPITKTPSSSITIR 401
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
SAS D ++ WD+++G + ++ + H A + H+L ++
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA-----VVEDVAWHLLHESL------ 244
Query: 235 LASGGLDRHIHLWDTR---IQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWN 290
S D+ + +WDTR + H V+CL+F + + +GS D+TV +W+
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 291 AED-RAYISTLFGHQSEVLTID-CLRKERVL-TVGRDRSMQLWKV 332
+ + + T H+ E+ + E +L + G DR + +W +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
SAS D ++ WD+++G + ++ + H A + H+L ++
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA-----VVEDVAWHLLHESL------ 244
Query: 235 LASGGLDRHIHLWDTR---IQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWN 290
S D+ + +WDTR + H V+CL+F + + +GS D+TV +W+
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 291 AED-RAYISTLFGHQSEVLTID-CLRKERVL-TVGRDRSMQLWKV 332
+ + + T H+ E+ + E +L + G DR + +W +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 26/172 (15%)
Query: 154 VLLKHRQSVTAVALS-EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212
+L HRQ + AV+ S D +AS D + WDV G L H K
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI------TLDQHNGKKS 234
Query: 213 QGRATKQSKH---ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI---------QAFPG 260
Q + + H + L +SDG +L + G D + LW++ E+ + G
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC 312
+ VSC +SE + T+ ++ I+ L GH T+DC
Sbjct: 295 LKFTVSC----GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK---TVDC 339
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPG-------------HRGPVSCLTFRQGTSEL 277
+GRY+ SGG D I L+D + HR V + + + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 278 F-SGSFDRTVKIWN------AEDRAYISTLFGHQ-SEVLTIDCL 313
F S SFD+T+K+W+ A+ + T++ H S V T CL
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL 158
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
SAS D +I WD+S+ + ++ + H A S H+L ++
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA-----VVEDVSWHLLHESL------ 242
Query: 235 LASGGLDRHIHLWDTR---IQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWN 290
S D+ + +WDTR + + H V+CL+F + + +GS D+TV +W+
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 291 AED-RAYISTLFGHQSEVLTID-CLRKERVL-TVGRDRSMQLWKV 332
+ + + + H+ E+ + E +L + G DR + +W +
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 21/150 (14%)
Query: 205 KSHGAKDPQGRATKQSKHILALAVSSDGRY-LASGGLDRHIHLWDTR-IQEHIQAFPGHR 262
+S+ P + + L+ + + LA+G D+ + LWD R ++ + +F H+
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 317
Query: 263 GPVSCLTFRQGTSELFSGS-FDRTVKIW------------NAEDRAYISTLF---GHQSE 306
+ + + + + S DR + +W +AED LF GH ++
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED-GPPELLFIHGGHTAK 376
Query: 307 VLTIDCLRKER--VLTVGRDRSMQLWKVPE 334
+ E + +V D MQ+W++ E
Sbjct: 377 ISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPG----HRGPVSCLTFRQGTSELFSGSFDRTVK 287
G +L +G + W+ +Q+ Q P H GPV + + S++F+ S D+T K
Sbjct: 54 GNFLIAGSWANDVRCWE--VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 288 IWNAEDRAYISTLFGHQSEVLTIDCLRKER---VLTVGRDRSMQLW 330
+W+ I + H + V TI ++ V+T D++++ W
Sbjct: 112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217
H V V S+D SK F+AS D + WD+SS + ++ V H K P
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC- 143
Query: 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTR 250
+ +G D+ + WDTR
Sbjct: 144 -----------------VMTGSWDKTLKFWDTR 159
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT--SELFSG 280
+L + S DG + + D+ +WD + IQ H PV + + + S + +G
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 281 SFDRTVKIWNA 291
S+D+T+K W+
Sbjct: 148 SWDKTLKFWDT 158
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
I+ + GH ++ L F + + L S S D +++WN + ++ + GH+ EVL+
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
D L E++++ G D S++LW++
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRI 190
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
I+ + GH ++ L F + + L S S D +++WN + ++ + GH+ EVL+
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
D L E++++ G D S++LW++
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRI 226
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
I+ + GH ++ L F + + L S S D +++WN + ++ + GH+ EVL+
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
D L E++++ G D S++LW++
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRI 185
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
I+ + GH ++ L F + + L S S D +++WN + ++ + GH+ EVL+
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
D L E++++ G D S++LW++
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 255 IQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYIST---LFGHQSEVLTI 310
I+ + GH ++ L F + + L S S D +++WN + ++ + GH+ EVL+
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 311 DC-LRKERVLTVGRDRSMQLWKV 332
D L E++++ G D S++LW++
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 34/211 (16%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
+ + D S+ W SSG ++ L + + ++I ++A +G Y
Sbjct: 130 LAVALDNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNY 172
Query: 235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294
LA G + LWD + Q+ ++ H V L++ + L SGS R+ I + + R
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGS--RSGHIHHHDVR 228
Query: 295 A---YISTLFGHQSEVLTIDCLRKERVLTV-GRDRSMQLWK--------VPEESRLVFRA 342
+++TL GH EV + R L G D + +W VP ++ +
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 343 PASSLECCCFISNDEFL-SGSDDGSIELWSL 372
++ C + SN G+ D I +W++
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 51/167 (30%)
Query: 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGT 274
S+ + L + DGR+LASGG D +++W + E +Q F H+G V + +
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 275 SELFS---GSFDRTVKIWN----------------------------------AEDR--- 294
S + + G+ DR ++IWN A+++
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 359
Query: 295 ------AYISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPE 334
A ++ L GH S VL++ V + D +++LW+ E
Sbjct: 360 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292
R G + I + D+ + H ++ L F L S S D +KIW+ +
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 293 DRAYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWK 331
D + TL GH++ V I + + R VL+ D +++LW+
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF 282
I L G L S D + +W + + + GHR V+ + + S S
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 198
Query: 283 DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF 340
D T+++W I T ++ ++ + L VG DR + +++ L F
Sbjct: 199 DGTIRLWECGTGTTIHTFNRKENPHDGVNSI----ALFVGTDRQLHEISTSKKNNLEF 252
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV 194
R L+ HR +VT +A+ + SAS DG+I W+ +G +
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292
R G + I + D+ + H ++ L F L S S D +KIW+ +
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 293 DRAYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWK 331
D + TL GH++ V I + + R VL+ D +++LW+
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF 282
I L G L S D + +W + + + GHR V+ + + S S
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201
Query: 283 DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF 340
D T+++W I T ++ ++ + L VG DR + +++ L F
Sbjct: 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSI----ALFVGTDRQLHEISTSKKNNLEF 255
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV 194
R L+ HR +VT +A+ + SAS DG+I W+ +G +
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 254 HIQA--FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV--LT 309
H++A GH P++ + + + LFS S D + +W + + + TL GH + +
Sbjct: 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID 81
Query: 310 IDCLRKERVLTVGRDRSMQLWKV 332
+DC K +T D S++LW V
Sbjct: 82 VDCFTK-YCVTGSADYSIKLWDV 103
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 36/85 (42%)
Query: 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT 274
+ T + + + + +G L S D +W + E + GH G + + T
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 275 SELFSGSFDRTVKIWNAEDRAYIST 299
+GS D ++K+W+ + ++T
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVAT 111
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 34/211 (16%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
+ + D S+ W SSG ++ L + + ++I ++A +G Y
Sbjct: 119 LAVALDNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNY 161
Query: 235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294
LA G + LWD + Q+ ++ H V L++ + L SGS R+ I + + R
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGS--RSGHIHHHDVR 217
Query: 295 A---YISTLFGHQSEVLTIDCLRKERVLTV-GRDRSMQLWK--------VPEESRLVFRA 342
+++TL GH EV + R L G D + +W VP ++ +
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 343 PASSLECCCFISNDEFL-SGSDDGSIELWSL 372
++ C + SN G+ D I +W++
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 51/167 (30%)
Query: 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGT 274
S+ + L + DGR+LASGG D +++W + E +Q F H+G V + +
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 275 SELFS---GSFDRTVKIWN----------------------------------AEDR--- 294
S + + G+ DR ++IWN A+++
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348
Query: 295 ------AYISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPE 334
A ++ L GH S VL++ V + D +++LW+ E
Sbjct: 349 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 34/211 (16%)
Query: 175 FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234
+ + D S+ W SSG ++ L + + ++I ++A +G Y
Sbjct: 39 LAVALDNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNY 81
Query: 235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294
LA G + LWD + Q+ ++ H V L++ + L SGS R+ I + + R
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGS--RSGHIHHHDVR 137
Query: 295 A---YISTLFGHQSEVLTIDCLRKERVLTV-GRDRSMQLWK--------VPEESRLVFRA 342
+++TL GH EV + R L G D + +W VP ++ +
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 343 PASSLECCCFISNDEFL-SGSDDGSIELWSL 372
++ C + SN G+ D I +W++
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 51/167 (30%)
Query: 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGT 274
S+ + L + DGR+LASGG D +++W + E +Q F H+G V + +
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 275 SELFS---GSFDRTVKIWNAEDRAYIST-------------------------------- 299
S + + G+ DR ++IWN A +S
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 268
Query: 300 -----------LFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPE 334
L GH S VL++ V + D +++LW+ E
Sbjct: 269 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 188 VSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247
V+S G LW E+L+ + + + L+V SDG SGG D + +W
Sbjct: 110 VASDSGAVELW---EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166
Query: 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWN 290
D + ++++ H V+C+ G +F S D + +W+
Sbjct: 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI-DCLRKERV- 318
H V L+ ++ SG D +VK+W+ +A + + H SEV + C K+ +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFIS-----------NDEFLSGSDDGSI 367
L+ G D + LW + PA+ ++ C + +D F G + G++
Sbjct: 198 LSCGEDGRILLWDTRKPK------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251
Query: 368 EL 369
L
Sbjct: 252 SL 253
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 317 RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLEC--CCFISNDEFLSGSDDGSIELWSLL 373
+ ++ G+D S+++W + +++ L + A +S + C C + FLS +DG I LW
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Query: 374 RKKP 377
+ KP
Sbjct: 213 KPKP 216
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR- 215
+H V +++ D ++ S KD S+ WD+S + VLKS+ A +
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS----------QKAVLKSYNAHSSEVNC 186
Query: 216 -ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR 250
A K + L+ DGR L LWDTR
Sbjct: 187 VAACPGKDTIFLSCGEDGRIL----------LWDTR 212
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 227 AVSSDGRYLASGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTS------ELFS 279
A S RYLA+G ++H+W+ E + + GH+ ++ + G E+ +
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 280 GSFDRTVKIWNAEDR 294
GS D TVK+W+ +
Sbjct: 135 GSRDGTVKVWDPRQK 149
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 232 GRYLASGGLDRHIHLWDTRI--QEHIQAFPGHRGPVSCLTFRQGT--SELFSGSFDRTVK 287
G LA+ DR + ++D R Q I GH GPV + + + L S S+DR V
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 288 IWNAEDRAYIST--LFGHQSEVLTI 310
IW E+ + + GH S V ++
Sbjct: 85 IWREENGTWEKSHEHAGHDSSVNSV 109
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 28/138 (20%)
Query: 235 LASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIW--- 289
LA+G D+ + LWD R ++ + +F H+ + + + + + S DR + +W
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 290 ---------NAEDRAYISTLF---GHQSEVLTIDCLRKER--VLTVGRDRSMQLWKVPEE 335
+AED LF GH +++ E + +V D MQ+W++ E
Sbjct: 355 KIGEEQSTEDAEDGP-PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
Query: 336 SRLVF-----RAPASSLE 348
V+ PAS LE
Sbjct: 414 ---VYNDEEPEIPASELE 428
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 28/138 (20%)
Query: 235 LASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIW--- 289
LA+G D+ + LWD R ++ + +F H+ + + + + + S DR + +W
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 290 ---------NAEDRAYISTLF---GHQSEVLTIDCLRKER--VLTVGRDRSMQLWKVPEE 335
+AED LF GH +++ E + +V D MQ+W++ E
Sbjct: 353 KIGEEQSTEDAEDGP-PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
Query: 336 SRLVF-----RAPASSLE 348
V+ PAS LE
Sbjct: 412 ---VYNDEEPEIPASELE 426
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 250 RIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAED-------RAYISTLF 301
R+ +++ GH PV + + + SGS D TV +W D R + TL
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 302 GHQSEVLTI--DCLRKERVLTVGRDRSMQLWKV 332
GH V + + +L+ G D + +W V
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 235 LASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIW--- 289
LA+G D+ + LWD R ++ + +F H+ + + + + + S DR + +W
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 290 ---------NAEDRAYISTLF---GHQSEVLTIDCLRKER--VLTVGRDRSMQLWKVPE 334
+AED LF GH +++ E + +V D MQ+W++ E
Sbjct: 357 KIGEEQSTEDAED-GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGS 281
+ ++V S G SG D I +WD Q + ++ H V+C+ +F S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 282 FDRTVKIWN 290
D + +W+
Sbjct: 190 EDNRILLWD 198
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 18/95 (18%)
Query: 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA 216
+H V+ V++ ++ S SKD I WD++ + VL S+ A Q
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA----------QQVVLSSYRAHAAQVTC 174
Query: 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI 251
S H D +L S D I LWDTR
Sbjct: 175 VAASPH-------KDSVFL-SCSEDNRILLWDTRC 201
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC-LRKERV- 318
H VS ++ ++ SGS D +K+W+ + +S+ H ++V + K+ V
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 319 LTVGRDRSMQLW 330
L+ D + LW
Sbjct: 186 LSCSEDNRILLW 197
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230
D F + G ++H V + K V + ++ K++ R +K LA A+ +
Sbjct: 247 DKAIFPGIQGGPLMH--VIAAKAVAFGEALQDDFKAYAK-----RVVDNAKR-LASALQN 298
Query: 231 DGRYLASGGLDRHIHLWDTRIQE 253
+G L SGG D H+ L D R Q+
Sbjct: 299 EGFTLVSGGTDNHLLLVDLRPQQ 321
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 250 RIQEHIQAFPGHRGPVSCLTF-RQGTSELFSGSFDRTVKIWNAED-------RAYISTLF 301
R+ +++ GH PV + + + + SGS D TV +W D R + TL
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 302 GHQSEVLTI--DCLRKERVLTVGRDRSMQLWKV 332
GH V + + +L+ G D + +W V
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 18/152 (11%)
Query: 362 SDDGSIELWSLL---RKKPV--YIVKNAHPLLDGLKNFEQDEGKISNGHSE-------NG 409
S D S+ELWSLL +KP+ V + LD N + G + NG E N
Sbjct: 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN 101
Query: 410 NLNPGXXXXXXXXXXXXXXTVCGGSDLAASGAGNGSVRLWAIESETKD------IQPLYN 463
+N ++ ASG NG + +W + T+ + P +
Sbjct: 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS 161
Query: 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495
+ V V SLA+ +S + A G W
Sbjct: 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA-VSSDGRYL 235
+ D SIL WD+ + P + + + H K IL+L D L
Sbjct: 236 SDNDPSILIWDLRNANT-----PLQTLNQGH------------QKGILSLDWCHQDEHLL 278
Query: 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDRTVKI 288
S G D + LW+ E + FP F +LF+ SFD +++
Sbjct: 279 LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,730,514
Number of Sequences: 62578
Number of extensions: 496520
Number of successful extensions: 1990
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1149
Number of HSP's gapped (non-prelim): 355
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)