Query 010296
Match_columns 513
No_of_seqs 877 out of 4038
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 22:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0299 U3 snoRNP-associated p 100.0 5.6E-59 1.2E-63 406.9 38.4 469 1-512 1-470 (479)
2 KOG0271 Notchless-like WD40 re 100.0 2.5E-50 5.5E-55 344.4 25.6 292 149-500 105-441 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-49 5.5E-54 342.6 26.7 280 157-496 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 3.6E-49 7.9E-54 337.4 25.0 296 140-496 138-479 (480)
5 KOG0286 G-protein beta subunit 100.0 3.1E-45 6.8E-50 302.7 31.1 285 153-496 49-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-44 5.7E-49 311.6 19.6 253 142-450 200-458 (459)
7 KOG0279 G protein beta subunit 100.0 7.1E-42 1.5E-46 281.2 29.3 293 151-498 7-313 (315)
8 KOG0285 Pleiotropic regulator 100.0 2.2E-41 4.7E-46 287.4 26.3 294 147-500 139-441 (460)
9 KOG0295 WD40 repeat-containing 100.0 4.9E-41 1.1E-45 286.0 26.4 288 150-497 99-405 (406)
10 KOG0315 G-protein beta subunit 100.0 1.8E-40 3.8E-45 268.4 27.2 277 172-503 11-293 (311)
11 KOG0296 Angio-associated migra 100.0 4E-39 8.7E-44 274.5 32.5 319 152-498 57-398 (399)
12 KOG0273 Beta-transducin family 100.0 5E-40 1.1E-44 288.9 27.3 303 151-501 171-485 (524)
13 KOG0279 G protein beta subunit 100.0 9E-40 2E-44 268.8 25.7 275 131-452 33-313 (315)
14 KOG0318 WD40 repeat stress pro 100.0 1.2E-38 2.7E-43 283.8 32.9 306 144-503 175-565 (603)
15 KOG0645 WD40 repeat protein [G 100.0 1.5E-38 3.2E-43 260.6 29.0 290 150-498 5-311 (312)
16 KOG0282 mRNA splicing factor [ 100.0 2.9E-40 6.3E-45 291.5 18.7 294 148-496 203-503 (503)
17 KOG0286 G-protein beta subunit 100.0 1.5E-38 3.2E-43 263.3 27.3 252 216-506 51-311 (343)
18 KOG0265 U5 snRNP-specific prot 100.0 8E-39 1.7E-43 265.9 25.8 289 150-494 38-334 (338)
19 KOG0273 Beta-transducin family 100.0 2.7E-38 5.9E-43 278.0 30.2 277 159-498 235-523 (524)
20 KOG0284 Polyadenylation factor 100.0 4E-40 8.7E-45 284.4 17.9 281 159-499 96-381 (464)
21 KOG0263 Transcription initiati 100.0 1.1E-38 2.5E-43 298.1 25.6 299 149-485 368-703 (707)
22 cd00200 WD40 WD40 domain, foun 100.0 1E-36 2.2E-41 280.7 35.9 285 152-496 2-289 (289)
23 KOG0315 G-protein beta subunit 100.0 1.7E-37 3.7E-42 251.1 26.3 276 141-475 22-308 (311)
24 KOG0293 WD40 repeat-containing 100.0 4E-38 8.7E-43 272.4 23.2 299 147-500 212-515 (519)
25 KOG0316 Conserved WD40 repeat- 100.0 3.5E-37 7.7E-42 247.3 24.8 287 149-496 7-297 (307)
26 KOG0291 WD40-repeat-containing 100.0 1.1E-36 2.4E-41 282.5 31.2 298 144-500 292-614 (893)
27 KOG0266 WD40 repeat-containing 100.0 3E-36 6.6E-41 290.3 31.7 289 153-498 152-454 (456)
28 KOG0263 Transcription initiati 100.0 5.6E-37 1.2E-41 286.9 22.7 243 220-503 378-654 (707)
29 PLN00181 protein SPA1-RELATED; 100.0 4.4E-35 9.6E-40 303.6 38.9 292 155-497 479-792 (793)
30 KOG0318 WD40 repeat stress pro 100.0 2.8E-35 6E-40 262.5 31.7 332 148-501 136-520 (603)
31 KOG0278 Serine/threonine kinas 100.0 2.9E-37 6.2E-42 250.0 16.4 290 154-504 9-303 (334)
32 KOG0276 Vesicle coat complex C 100.0 4.3E-36 9.2E-41 272.9 25.4 282 152-493 6-294 (794)
33 KOG0291 WD40-repeat-containing 100.0 4.8E-35 1E-39 271.6 30.2 343 152-501 182-553 (893)
34 KOG0284 Polyadenylation factor 100.0 7.3E-37 1.6E-41 264.3 16.0 257 143-454 122-382 (464)
35 KOG0281 Beta-TrCP (transducin 100.0 1.3E-36 2.8E-41 257.5 16.3 275 158-502 196-481 (499)
36 KOG2055 WD40 repeat protein [G 100.0 1.4E-34 3.1E-39 254.0 28.0 281 157-497 211-511 (514)
37 KOG0319 WD40-repeat-containing 100.0 4.8E-35 1E-39 271.2 25.8 339 138-500 83-537 (775)
38 KOG0296 Angio-associated migra 100.0 3.7E-35 8.1E-40 250.4 22.8 254 143-452 90-398 (399)
39 KOG0288 WD40 repeat protein Ti 100.0 9.4E-36 2E-40 257.9 18.5 297 145-495 161-458 (459)
40 KOG0292 Vesicle coat complex C 100.0 9.9E-35 2.2E-39 273.8 26.5 287 155-500 5-323 (1202)
41 KOG0313 Microtubule binding pr 100.0 3.7E-34 8.1E-39 245.4 27.1 283 157-499 103-419 (423)
42 KOG0295 WD40 repeat-containing 100.0 8.1E-35 1.8E-39 248.2 22.6 253 143-451 134-405 (406)
43 KOG0275 Conserved WD40 repeat- 100.0 6.5E-35 1.4E-39 245.1 18.6 290 157-496 211-507 (508)
44 KOG0772 Uncharacterized conser 100.0 1.8E-33 3.9E-38 250.3 27.8 291 152-495 160-484 (641)
45 KOG1407 WD40 repeat protein [F 100.0 2.8E-33 6E-38 228.4 26.1 276 153-488 14-293 (313)
46 KOG0643 Translation initiation 100.0 2.5E-33 5.3E-38 229.5 25.1 286 154-500 5-319 (327)
47 KOG0319 WD40-repeat-containing 100.0 1.1E-33 2.5E-38 262.1 25.2 295 145-500 309-621 (775)
48 KOG0285 Pleiotropic regulator 100.0 1.3E-33 2.9E-38 240.1 22.7 265 142-454 176-441 (460)
49 KOG0265 U5 snRNP-specific prot 100.0 2E-33 4.3E-38 233.9 22.8 251 211-499 38-297 (338)
50 KOG0647 mRNA export protein (c 100.0 3.3E-32 7.2E-37 226.8 29.4 306 154-511 22-337 (347)
51 KOG0310 Conserved WD40 repeat- 100.0 7.9E-33 1.7E-37 245.1 26.7 277 159-495 26-306 (487)
52 KOG0268 Sof1-like rRNA process 100.0 3.1E-34 6.8E-39 244.4 14.9 292 150-506 57-353 (433)
53 KOG0306 WD40-repeat-containing 100.0 1.6E-32 3.4E-37 254.9 26.7 284 153-499 367-665 (888)
54 KOG0289 mRNA splicing factor [ 100.0 5.8E-32 1.3E-36 235.8 28.1 324 115-496 166-504 (506)
55 KOG0645 WD40 repeat protein [G 100.0 4.7E-32 1E-36 222.5 24.8 252 148-452 49-311 (312)
56 KOG0278 Serine/threonine kinas 100.0 1.7E-33 3.6E-38 228.2 15.8 251 147-454 47-299 (334)
57 KOG0300 WD40 repeat-containing 100.0 5.9E-32 1.3E-36 226.7 25.2 294 148-500 137-478 (481)
58 KOG0283 WD40 repeat-containing 100.0 1.8E-32 3.8E-37 259.0 24.2 310 151-500 258-578 (712)
59 KOG0292 Vesicle coat complex C 100.0 8.8E-32 1.9E-36 254.1 28.7 225 143-386 35-293 (1202)
60 KOG0281 Beta-TrCP (transducin 100.0 2.4E-33 5.3E-38 237.7 16.4 255 142-454 220-479 (499)
61 KOG0266 WD40 repeat-containing 100.0 4.5E-32 9.8E-37 261.4 27.2 247 151-452 195-454 (456)
62 KOG1446 Histone H3 (Lys4) meth 100.0 7E-31 1.5E-35 220.9 30.6 287 152-498 7-303 (311)
63 KOG0316 Conserved WD40 repeat- 100.0 3.4E-32 7.3E-37 218.8 21.0 245 215-501 12-260 (307)
64 KOG0640 mRNA cleavage stimulat 100.0 2.8E-32 6E-37 228.0 21.1 308 152-498 105-426 (430)
65 KOG0277 Peroxisomal targeting 100.0 6.2E-32 1.3E-36 219.7 21.7 280 162-497 11-308 (311)
66 KOG1036 Mitotic spindle checkp 100.0 1.4E-30 2.9E-35 218.1 29.0 297 158-511 12-316 (323)
67 KOG0301 Phospholipase A2-activ 100.0 3.9E-31 8.5E-36 243.7 25.5 283 151-500 6-290 (745)
68 KOG0306 WD40-repeat-containing 100.0 6.8E-31 1.5E-35 244.1 27.0 334 142-501 90-583 (888)
69 KOG0282 mRNA splicing factor [ 100.0 1.2E-32 2.7E-37 243.4 14.5 248 215-500 209-464 (503)
70 KOG0274 Cdc4 and related F-box 100.0 6.3E-31 1.4E-35 252.0 27.2 281 157-504 206-488 (537)
71 KOG0294 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 219.0 24.9 268 150-476 34-306 (362)
72 KOG0641 WD40 repeat protein [G 100.0 1.5E-29 3.2E-34 202.4 29.7 300 157-498 30-349 (350)
73 cd00200 WD40 WD40 domain, foun 100.0 3.5E-30 7.5E-35 237.0 30.3 251 144-450 36-289 (289)
74 KOG0299 U3 snoRNP-associated p 100.0 1E-30 2.2E-35 230.0 24.5 239 156-449 199-453 (479)
75 KOG0276 Vesicle coat complex C 100.0 2.9E-31 6.4E-36 241.6 21.8 244 216-500 9-259 (794)
76 KOG0973 Histone transcription 100.0 7.7E-31 1.7E-35 254.3 25.1 299 155-500 9-357 (942)
77 KOG0293 WD40 repeat-containing 100.0 4E-31 8.7E-36 229.2 20.0 252 146-454 256-515 (519)
78 PTZ00421 coronin; Provisional 100.0 2.4E-29 5.3E-34 241.1 32.8 277 158-479 19-315 (493)
79 KOG0305 Anaphase promoting com 100.0 3E-30 6.4E-35 237.9 24.8 254 143-454 201-463 (484)
80 KOG0310 Conserved WD40 repeat- 100.0 6.9E-30 1.5E-34 226.5 24.2 253 144-454 53-311 (487)
81 PLN00181 protein SPA1-RELATED; 100.0 4.9E-29 1.1E-33 258.7 34.5 250 158-451 531-792 (793)
82 KOG0305 Anaphase promoting com 100.0 1.6E-29 3.5E-34 233.0 27.0 276 163-503 181-466 (484)
83 PTZ00420 coronin; Provisional 100.0 9.7E-29 2.1E-33 237.7 33.4 247 177-480 50-319 (568)
84 KOG0313 Microtubule binding pr 100.0 7.1E-30 1.5E-34 219.3 22.6 250 148-452 133-418 (423)
85 KOG2096 WD40 repeat protein [G 100.0 1E-28 2.2E-33 207.5 26.2 300 151-501 78-405 (420)
86 KOG0274 Cdc4 and related F-box 100.0 2.4E-29 5.1E-34 241.2 25.4 251 142-454 231-484 (537)
87 KOG0294 WD40 repeat-containing 100.0 1.1E-28 2.3E-33 207.2 25.1 276 174-502 4-285 (362)
88 KOG1446 Histone H3 (Lys4) meth 100.0 9.7E-28 2.1E-32 202.1 29.3 253 217-506 11-270 (311)
89 KOG0277 Peroxisomal targeting 100.0 2.4E-29 5.1E-34 204.7 18.8 240 158-451 59-308 (311)
90 KOG0643 Translation initiation 100.0 2E-28 4.4E-33 200.8 24.1 234 216-490 6-254 (327)
91 KOG0275 Conserved WD40 repeat- 100.0 6.9E-30 1.5E-34 215.0 15.5 242 154-450 258-507 (508)
92 PTZ00421 coronin; Provisional 100.0 8.6E-28 1.9E-32 230.4 31.2 246 219-501 19-293 (493)
93 KOG0973 Histone transcription 100.0 6.6E-29 1.4E-33 241.0 23.4 268 150-454 60-357 (942)
94 KOG0639 Transducin-like enhanc 100.0 6.6E-29 1.4E-33 220.7 20.3 283 157-497 417-703 (705)
95 KOG1539 WD repeat protein [Gen 100.0 9.1E-28 2E-32 226.0 28.1 331 141-498 184-648 (910)
96 KOG0308 Conserved WD40 repeat- 100.0 6E-29 1.3E-33 227.7 19.2 290 157-500 19-329 (735)
97 PTZ00420 coronin; Provisional 100.0 2.5E-27 5.5E-32 228.0 31.4 230 238-500 50-295 (568)
98 KOG0772 Uncharacterized conser 100.0 8.4E-29 1.8E-33 220.7 19.1 250 216-499 163-446 (641)
99 KOG1407 WD40 repeat protein [F 100.0 3.5E-28 7.6E-33 198.7 21.0 246 215-502 15-265 (313)
100 KOG1408 WD40 repeat protein [F 100.0 3.6E-28 7.9E-33 224.7 23.5 324 137-498 347-713 (1080)
101 KOG0300 WD40 repeat-containing 100.0 4.3E-28 9.4E-33 203.6 18.7 280 142-454 173-478 (481)
102 KOG0288 WD40 repeat protein Ti 100.0 7.9E-29 1.7E-33 215.1 13.9 247 215-502 170-421 (459)
103 KOG0646 WD40 repeat protein [G 100.0 2E-27 4.4E-32 209.7 22.4 281 172-498 51-350 (476)
104 KOG1274 WD40 repeat protein [G 100.0 1.4E-26 3E-31 220.6 29.6 276 156-495 10-297 (933)
105 KOG1332 Vesicle coat complex C 100.0 8.9E-28 1.9E-32 194.5 17.4 249 216-500 7-288 (299)
106 KOG0640 mRNA cleavage stimulat 100.0 1.3E-27 2.7E-32 200.2 18.3 253 215-503 107-388 (430)
107 KOG1332 Vesicle coat complex C 100.0 1.6E-27 3.4E-32 193.1 17.3 251 154-454 6-288 (299)
108 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.2E-25 2.6E-30 208.7 32.7 275 172-502 2-283 (300)
109 KOG0289 mRNA splicing factor [ 100.0 1.4E-26 3.1E-31 202.4 23.6 252 144-451 246-505 (506)
110 KOG2106 Uncharacterized conser 100.0 3.8E-25 8.1E-30 197.1 32.8 293 144-495 185-518 (626)
111 KOG0301 Phospholipase A2-activ 100.0 1.2E-26 2.6E-31 214.4 23.4 239 150-453 48-289 (745)
112 KOG0308 Conserved WD40 repeat- 100.0 4.5E-27 9.8E-32 215.5 20.4 334 131-502 42-397 (735)
113 KOG0268 Sof1-like rRNA process 100.0 1.1E-27 2.3E-32 204.8 14.9 253 140-454 90-347 (433)
114 KOG4283 Transcription-coupled 100.0 5.6E-26 1.2E-30 189.1 24.7 303 153-498 37-365 (397)
115 KOG2106 Uncharacterized conser 100.0 4.4E-25 9.5E-30 196.7 30.8 298 140-503 135-482 (626)
116 KOG0641 WD40 repeat protein [G 100.0 3.9E-25 8.5E-30 177.1 26.5 251 150-452 80-349 (350)
117 KOG0650 WD40 repeat nucleolar 100.0 2.1E-26 4.5E-31 209.2 21.5 292 145-495 386-732 (733)
118 KOG0264 Nucleosome remodeling 99.9 1.5E-26 3.2E-31 203.9 19.4 266 156-453 121-405 (422)
119 KOG0647 mRNA export protein (c 99.9 1.2E-25 2.5E-30 187.9 23.5 244 218-499 25-282 (347)
120 KOG0264 Nucleosome remodeling 99.9 6.2E-26 1.4E-30 200.0 19.7 246 216-498 120-404 (422)
121 KOG4328 WD40 protein [Function 99.9 1.7E-25 3.6E-30 197.1 21.8 299 149-498 176-495 (498)
122 KOG0269 WD40 repeat-containing 99.9 7.8E-26 1.7E-30 211.5 19.8 286 159-497 39-339 (839)
123 KOG0639 Transducin-like enhanc 99.9 8.5E-26 1.9E-30 201.0 18.8 255 141-451 445-703 (705)
124 KOG2048 WD40 repeat protein [G 99.9 2.1E-24 4.6E-29 199.2 28.4 283 156-496 22-317 (691)
125 KOG0646 WD40 repeat protein [G 99.9 3.7E-25 8.1E-30 195.5 22.5 263 177-499 13-308 (476)
126 KOG1034 Transcriptional repres 99.9 2.5E-25 5.5E-30 188.0 20.4 307 154-499 33-384 (385)
127 KOG1036 Mitotic spindle checkp 99.9 1.3E-24 2.8E-29 182.4 23.5 243 219-502 12-266 (323)
128 KOG1273 WD40 repeat protein [G 99.9 7.9E-25 1.7E-29 183.9 21.8 286 162-500 26-324 (405)
129 KOG1539 WD repeat protein [Gen 99.9 1.3E-24 2.8E-29 205.0 25.1 319 162-502 162-610 (910)
130 KOG0283 WD40 repeat-containing 99.9 1.4E-25 3E-30 212.6 18.3 240 218-498 265-532 (712)
131 KOG0321 WD40 repeat-containing 99.9 1.4E-24 3E-29 198.9 21.8 293 158-501 46-394 (720)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-23 7E-28 192.3 31.6 269 144-477 16-300 (300)
133 KOG1273 WD40 repeat protein [G 99.9 1.7E-24 3.6E-29 182.0 20.4 242 223-501 26-283 (405)
134 KOG2445 Nuclear pore complex c 99.9 8.3E-24 1.8E-28 177.3 23.0 264 156-454 10-320 (361)
135 KOG2048 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 192.3 27.6 336 144-501 95-508 (691)
136 KOG1063 RNA polymerase II elon 99.9 7.4E-24 1.6E-28 195.9 24.0 352 147-502 179-606 (764)
137 KOG1063 RNA polymerase II elon 99.9 7.5E-24 1.6E-28 195.9 23.3 297 154-500 262-650 (764)
138 KOG0270 WD40 repeat-containing 99.9 2.2E-23 4.8E-28 183.3 24.9 241 223-501 176-452 (463)
139 KOG0267 Microtubule severing p 99.9 7.5E-26 1.6E-30 210.0 9.9 253 169-486 2-257 (825)
140 KOG0267 Microtubule severing p 99.9 9.3E-26 2E-30 209.3 10.5 236 153-444 22-260 (825)
141 KOG0269 WD40 repeat-containing 99.9 6E-25 1.3E-29 205.6 15.8 242 162-458 90-346 (839)
142 KOG4378 Nuclear protein COP1 [ 99.9 5.6E-24 1.2E-28 189.3 21.1 260 162-479 37-305 (673)
143 KOG1408 WD40 repeat protein [F 99.9 1.9E-23 4.2E-28 193.8 24.2 290 162-501 327-674 (1080)
144 KOG2445 Nuclear pore complex c 99.9 8.2E-23 1.8E-27 171.4 25.6 247 216-498 9-318 (361)
145 KOG1274 WD40 repeat protein [G 99.9 2.5E-23 5.4E-28 198.6 25.5 250 217-499 10-263 (933)
146 KOG0302 Ribosome Assembly prot 99.9 2.5E-23 5.4E-28 179.1 20.8 216 156-375 148-380 (440)
147 KOG4283 Transcription-coupled 99.9 1.4E-22 3E-27 169.0 24.0 225 215-463 38-287 (397)
148 KOG2055 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 177.8 24.1 239 219-495 212-464 (514)
149 KOG1009 Chromatin assembly com 99.9 2.1E-22 4.6E-27 175.1 22.7 290 159-499 13-373 (434)
150 KOG4227 WD40 repeat protein [G 99.9 3.7E-22 8E-27 172.8 23.1 299 152-497 49-386 (609)
151 KOG0270 WD40 repeat-containing 99.9 8.2E-23 1.8E-27 179.7 18.4 258 162-454 176-451 (463)
152 KOG0302 Ribosome Assembly prot 99.9 1.8E-22 3.9E-27 173.9 19.2 242 216-495 147-435 (440)
153 KOG1445 Tumor-specific antigen 99.9 1.3E-22 2.7E-27 186.0 18.5 131 150-293 70-201 (1012)
154 KOG1538 Uncharacterized conser 99.9 5.6E-22 1.2E-26 182.8 22.1 272 161-500 14-295 (1081)
155 KOG4378 Nuclear protein COP1 [ 99.9 3.2E-22 7E-27 178.2 18.7 263 177-500 8-282 (673)
156 KOG2919 Guanine nucleotide-bin 99.9 4.4E-21 9.5E-26 162.2 22.0 284 162-488 52-361 (406)
157 KOG0321 WD40 repeat-containing 99.9 2E-21 4.3E-26 178.4 20.8 250 152-454 93-393 (720)
158 KOG0650 WD40 repeat nucleolar 99.9 1.1E-21 2.4E-26 178.7 19.1 241 215-496 395-678 (733)
159 KOG0322 G-protein beta subunit 99.9 8.1E-22 1.8E-26 161.9 15.1 285 149-497 4-322 (323)
160 KOG0303 Actin-binding protein 99.9 2.5E-21 5.4E-26 167.9 18.4 215 152-379 74-300 (472)
161 KOG4328 WD40 protein [Function 99.9 2.6E-21 5.7E-26 170.9 18.2 252 215-500 181-452 (498)
162 KOG1007 WD repeat protein TSSC 99.9 2.2E-20 4.8E-25 155.5 21.5 250 216-503 59-366 (370)
163 KOG0642 Cell-cycle nuclear pro 99.9 1.4E-21 3E-26 177.1 15.6 292 172-498 243-561 (577)
164 KOG0307 Vesicle coat complex C 99.9 1.1E-21 2.4E-26 192.1 14.6 242 219-501 63-330 (1049)
165 KOG2096 WD40 repeat protein [G 99.9 6.3E-20 1.4E-24 154.9 22.8 243 160-450 133-400 (420)
166 KOG1034 Transcriptional repres 99.9 5.5E-21 1.2E-25 162.0 16.1 243 157-452 87-383 (385)
167 KOG0644 Uncharacterized conser 99.9 6.9E-22 1.5E-26 186.6 11.8 283 149-500 180-470 (1113)
168 COG2319 FOG: WD40 repeat [Gene 99.9 1.4E-18 3E-23 170.0 35.7 290 154-501 60-362 (466)
169 KOG1538 Uncharacterized conser 99.9 1.1E-20 2.3E-25 174.4 18.5 249 143-453 37-294 (1081)
170 KOG1188 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 160.1 18.0 281 172-497 41-345 (376)
171 KOG0649 WD40 repeat protein [G 99.9 7.3E-19 1.6E-23 143.0 26.0 278 160-495 11-313 (325)
172 KOG0307 Vesicle coat complex C 99.9 4.6E-21 1E-25 187.8 15.7 247 159-455 64-330 (1049)
173 PRK11028 6-phosphogluconolacto 99.9 9E-19 1.9E-23 163.9 30.7 273 176-498 7-304 (330)
174 KOG0642 Cell-cycle nuclear pro 99.9 4.4E-21 9.6E-26 173.9 13.8 252 154-454 289-563 (577)
175 KOG0303 Actin-binding protein 99.9 1.8E-19 3.8E-24 156.5 22.5 230 215-480 76-322 (472)
176 KOG1009 Chromatin assembly com 99.9 6.1E-20 1.3E-24 160.0 19.5 266 150-454 56-374 (434)
177 KOG1587 Cytoplasmic dynein int 99.9 2.4E-19 5.1E-24 171.1 24.4 259 181-499 222-517 (555)
178 KOG2919 Guanine nucleotide-bin 99.9 1.7E-19 3.7E-24 152.6 20.4 239 223-499 52-328 (406)
179 COG2319 FOG: WD40 repeat [Gene 99.8 2E-17 4.3E-22 161.8 35.8 287 149-499 145-443 (466)
180 KOG1963 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 165.6 26.3 293 156-499 202-539 (792)
181 KOG1188 WD40 repeat protein [G 99.8 1.4E-19 3E-24 154.4 17.0 258 140-453 51-347 (376)
182 KOG1524 WD40 repeat-containing 99.8 2.9E-19 6.2E-24 161.1 18.8 265 157-489 12-278 (737)
183 KOG1517 Guanine nucleotide bin 99.8 1.2E-18 2.5E-23 169.2 24.2 296 155-502 1060-1385(1387)
184 KOG1963 WD40 repeat protein [G 99.8 5.7E-18 1.2E-22 162.0 27.9 327 143-497 41-486 (792)
185 KOG1334 WD40 repeat protein [G 99.8 1.2E-19 2.7E-24 161.7 15.5 305 150-500 133-468 (559)
186 KOG1007 WD repeat protein TSSC 99.8 1.4E-18 3E-23 144.9 17.4 207 151-373 114-361 (370)
187 KOG0649 WD40 repeat protein [G 99.8 6.3E-17 1.4E-21 131.8 24.3 209 151-374 54-275 (325)
188 KOG1587 Cytoplasmic dynein int 99.8 1.2E-17 2.6E-22 159.6 23.4 247 157-454 240-518 (555)
189 KOG1310 WD40 repeat protein [G 99.8 1.1E-18 2.5E-23 157.8 14.6 165 151-333 42-231 (758)
190 KOG0290 Conserved WD40 repeat- 99.8 7.8E-17 1.7E-21 134.7 23.5 271 160-487 45-356 (364)
191 KOG0644 Uncharacterized conser 99.8 2E-19 4.4E-24 170.1 8.4 243 215-506 185-434 (1113)
192 KOG1240 Protein kinase contain 99.8 5E-17 1.1E-21 160.4 24.9 318 149-496 1038-1431(1431)
193 KOG2110 Uncharacterized conser 99.8 1.9E-16 4.1E-21 136.9 24.5 236 220-500 5-250 (391)
194 PRK11028 6-phosphogluconolacto 99.8 5.3E-16 1.2E-20 145.2 29.3 265 158-475 33-327 (330)
195 KOG4497 Uncharacterized conser 99.8 1.3E-16 2.8E-21 135.7 22.2 309 164-499 13-392 (447)
196 KOG1272 WD40-repeat-containing 99.8 8.8E-19 1.9E-23 155.4 9.5 263 160-485 130-397 (545)
197 KOG1445 Tumor-specific antigen 99.8 1.5E-17 3.3E-22 153.0 17.8 264 167-481 587-873 (1012)
198 KOG2110 Uncharacterized conser 99.8 2.7E-15 5.8E-20 129.9 29.8 280 159-500 5-332 (391)
199 KOG2139 WD40 repeat protein [G 99.8 3.5E-16 7.6E-21 134.8 23.7 303 159-497 98-430 (445)
200 KOG4227 WD40 repeat protein [G 99.8 4.8E-17 1E-21 141.4 18.5 253 215-500 51-324 (609)
201 KOG0771 Prolactin regulatory e 99.8 2E-17 4.3E-22 145.6 16.0 194 224-454 148-356 (398)
202 KOG1524 WD40 repeat-containing 99.8 3.8E-17 8.2E-22 147.6 17.3 209 172-451 76-285 (737)
203 KOG0771 Prolactin regulatory e 99.8 9.8E-17 2.1E-21 141.2 19.2 198 266-499 148-355 (398)
204 KOG1523 Actin-related protein 99.8 1.3E-16 2.8E-21 135.3 18.4 210 146-372 42-277 (361)
205 KOG2321 WD40 repeat protein [G 99.7 3.2E-16 7E-21 142.9 22.1 275 157-495 49-340 (703)
206 PRK01742 tolB translocation pr 99.7 1.7E-16 3.7E-21 153.1 21.0 231 180-478 183-426 (429)
207 KOG1523 Actin-related protein 99.7 3.1E-16 6.8E-21 133.0 19.7 238 220-478 10-260 (361)
208 KOG0290 Conserved WD40 repeat- 99.7 4.2E-16 9E-21 130.4 19.1 244 221-502 45-322 (364)
209 PF02239 Cytochrom_D1: Cytochr 99.7 9.2E-15 2E-19 136.2 28.5 297 146-502 23-351 (369)
210 KOG1517 Guanine nucleotide bin 99.7 7.5E-16 1.6E-20 150.1 21.3 272 143-454 1090-1383(1387)
211 KOG0322 G-protein beta subunit 99.7 1.5E-16 3.3E-21 131.2 13.7 248 144-451 40-322 (323)
212 KOG1272 WD40-repeat-containing 99.7 1.5E-17 3.2E-22 147.7 8.2 228 221-496 130-360 (545)
213 KOG2111 Uncharacterized conser 99.7 4.8E-14 1.1E-18 119.9 28.3 234 162-454 8-258 (346)
214 KOG1310 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 144.1 13.3 160 215-374 45-232 (758)
215 PRK01742 tolB translocation pr 99.7 1.2E-15 2.5E-20 147.3 20.2 206 152-382 196-412 (429)
216 KOG2111 Uncharacterized conser 99.7 2E-14 4.4E-19 122.1 23.3 235 223-500 8-258 (346)
217 PRK03629 tolB translocation pr 99.7 5.7E-14 1.2E-18 135.2 27.1 233 181-478 179-428 (429)
218 KOG1240 Protein kinase contain 99.7 2E-14 4.2E-19 142.5 23.9 251 215-503 1043-1339(1431)
219 KOG2315 Predicted translation 99.7 7.4E-14 1.6E-18 127.6 25.8 272 159-499 34-391 (566)
220 KOG4497 Uncharacterized conser 99.7 1.1E-13 2.3E-18 118.2 24.5 268 159-490 48-424 (447)
221 PRK05137 tolB translocation pr 99.6 1.1E-13 2.3E-18 134.2 26.2 232 181-478 182-433 (435)
222 PF10282 Lactonase: Lactonase, 99.6 9.1E-13 2E-17 123.4 31.4 247 221-498 37-322 (345)
223 KOG2394 WD40 protein DMR-N9 [G 99.6 3.5E-15 7.6E-20 135.2 14.4 156 159-314 219-384 (636)
224 KOG1354 Serine/threonine prote 99.6 3.4E-14 7.5E-19 121.9 17.8 271 158-454 24-361 (433)
225 PRK04922 tolB translocation pr 99.6 1.1E-13 2.4E-18 133.9 23.7 232 181-477 184-432 (433)
226 KOG1334 WD40 repeat protein [G 99.6 9.6E-15 2.1E-19 130.9 14.0 254 215-500 137-426 (559)
227 KOG2139 WD40 repeat protein [G 99.6 9.4E-13 2E-17 114.0 25.4 167 159-332 140-308 (445)
228 KOG3881 Uncharacterized conser 99.6 2.2E-13 4.7E-18 119.1 20.4 266 157-478 53-342 (412)
229 PRK02889 tolB translocation pr 99.6 4.5E-13 9.7E-18 129.2 24.1 216 218-478 193-425 (427)
230 TIGR02658 TTQ_MADH_Hv methylam 99.6 1.2E-11 2.7E-16 112.5 31.4 264 181-501 27-333 (352)
231 PRK03629 tolB translocation pr 99.6 5.8E-13 1.3E-17 128.3 24.0 205 153-381 192-413 (429)
232 KOG0974 WD-repeat protein WDR6 99.6 7.3E-13 1.6E-17 129.8 24.2 202 157-374 85-289 (967)
233 PF02239 Cytochrom_D1: Cytochr 99.6 1.4E-12 3.1E-17 121.6 25.3 280 172-500 6-304 (369)
234 PRK05137 tolB translocation pr 99.6 1.1E-12 2.3E-17 127.2 25.4 213 242-499 182-413 (435)
235 KOG2321 WD40 repeat protein [G 99.6 6E-13 1.3E-17 121.9 21.3 253 217-502 48-306 (703)
236 COG2706 3-carboxymuconate cycl 99.6 4.3E-11 9.3E-16 104.5 31.1 276 180-499 15-322 (346)
237 PF08662 eIF2A: Eukaryotic tra 99.6 2.6E-13 5.6E-18 114.9 16.8 111 343-498 58-179 (194)
238 PF08662 eIF2A: Eukaryotic tra 99.5 9.7E-13 2.1E-17 111.4 19.7 151 163-336 9-182 (194)
239 PRK04922 tolB translocation pr 99.5 1E-12 2.2E-17 127.3 22.5 212 242-498 184-411 (433)
240 COG5354 Uncharacterized protei 99.5 5.1E-12 1.1E-16 114.4 25.0 292 143-500 16-397 (561)
241 KOG1409 Uncharacterized conser 99.5 6.7E-13 1.5E-17 114.1 18.5 250 150-454 15-272 (404)
242 KOG2394 WD40 protein DMR-N9 [G 99.5 1.7E-13 3.8E-18 124.4 15.1 171 168-353 182-383 (636)
243 PRK02889 tolB translocation pr 99.5 2.7E-12 5.8E-17 123.8 24.3 210 242-496 176-399 (427)
244 KOG1354 Serine/threonine prote 99.5 7E-13 1.5E-17 114.0 17.6 258 220-502 25-363 (433)
245 PF10282 Lactonase: Lactonase, 99.5 1.1E-10 2.5E-15 109.3 31.8 266 159-475 36-345 (345)
246 KOG2041 WD40 repeat protein [G 99.5 5.5E-12 1.2E-16 118.6 22.2 298 158-504 13-343 (1189)
247 TIGR02800 propeller_TolB tol-p 99.5 9.3E-12 2E-16 121.0 25.0 157 218-376 187-357 (417)
248 KOG2314 Translation initiation 99.5 2.2E-11 4.7E-16 111.5 24.6 277 161-499 212-526 (698)
249 KOG0280 Uncharacterized conser 99.5 2.3E-11 5E-16 102.7 21.6 268 180-502 45-337 (339)
250 KOG3881 Uncharacterized conser 99.5 5.1E-12 1.1E-16 110.7 18.2 210 155-382 101-329 (412)
251 PRK00178 tolB translocation pr 99.5 3.9E-11 8.4E-16 116.7 26.4 216 218-478 196-428 (430)
252 COG2706 3-carboxymuconate cycl 99.5 9.2E-10 2E-14 96.4 31.0 273 153-476 33-345 (346)
253 TIGR02800 propeller_TolB tol-p 99.4 3.4E-11 7.3E-16 117.0 24.5 205 242-491 170-388 (417)
254 PRK04792 tolB translocation pr 99.4 4.9E-11 1.1E-15 115.4 24.7 215 218-477 215-446 (448)
255 KOG1064 RAVE (regulator of V-A 99.4 6.9E-13 1.5E-17 136.3 12.1 199 156-385 2205-2410(2439)
256 PF04762 IKI3: IKI3 family; I 99.4 7.3E-10 1.6E-14 114.9 31.4 335 157-497 118-518 (928)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 9.7E-10 2.1E-14 100.2 28.3 235 167-454 53-332 (352)
258 KOG0974 WD-repeat protein WDR6 99.4 1.9E-11 4.1E-16 120.1 18.2 191 226-454 93-290 (967)
259 KOG2314 Translation initiation 99.4 2.1E-10 4.6E-15 105.1 23.5 268 161-487 251-557 (698)
260 PRK00178 tolB translocation pr 99.4 1.9E-10 4.1E-15 111.9 25.2 208 243-495 180-401 (430)
261 PRK01029 tolB translocation pr 99.4 5.1E-10 1.1E-14 107.5 26.6 218 219-479 183-426 (428)
262 PRK01029 tolB translocation pr 99.4 2.6E-10 5.6E-15 109.5 23.9 208 153-380 178-410 (428)
263 KOG1064 RAVE (regulator of V-A 99.4 4.9E-12 1.1E-16 130.3 12.4 189 217-454 2205-2400(2439)
264 TIGR03300 assembly_YfgL outer 99.4 7.2E-10 1.6E-14 106.0 26.7 263 170-502 64-342 (377)
265 COG4946 Uncharacterized protei 99.4 2E-09 4.3E-14 97.1 27.2 165 170-357 331-501 (668)
266 KOG4547 WD40 repeat-containing 99.3 3.7E-10 8E-15 104.6 22.7 189 168-374 2-221 (541)
267 KOG4547 WD40 repeat-containing 99.3 1E-10 2.2E-15 108.2 19.1 195 272-508 3-230 (541)
268 KOG1409 Uncharacterized conser 99.3 1.2E-10 2.6E-15 100.5 17.9 200 158-375 67-272 (404)
269 PRK04792 tolB translocation pr 99.3 5.3E-10 1.1E-14 108.3 24.7 208 243-495 199-420 (448)
270 COG5354 Uncharacterized protei 99.3 1.3E-09 2.8E-14 99.1 24.7 274 159-485 71-417 (561)
271 KOG0280 Uncharacterized conser 99.3 4.5E-10 9.8E-15 95.0 19.5 204 159-375 69-286 (339)
272 PLN02919 haloacid dehalogenase 99.3 9.9E-09 2.1E-13 108.8 32.7 256 224-501 571-891 (1057)
273 PF04762 IKI3: IKI3 family; I 99.3 4.1E-09 8.8E-14 109.5 29.0 310 158-498 74-456 (928)
274 KOG2315 Predicted translation 99.3 9E-10 1.9E-14 101.4 21.2 271 220-499 34-345 (566)
275 TIGR03300 assembly_YfgL outer 99.3 3.2E-09 6.9E-14 101.5 26.1 258 170-495 104-376 (377)
276 KOG1912 WD40 repeat protein [G 99.3 8.6E-09 1.9E-13 98.6 27.5 211 145-374 41-305 (1062)
277 KOG2041 WD40 repeat protein [G 99.3 9E-11 1.9E-15 110.7 14.0 240 219-489 13-279 (1189)
278 KOG4190 Uncharacterized conser 99.3 2.5E-11 5.5E-16 111.0 9.4 289 152-494 728-1032(1034)
279 COG5170 CDC55 Serine/threonine 99.2 8.3E-10 1.8E-14 94.1 16.0 258 219-499 25-368 (460)
280 KOG0309 Conserved WD40 repeat- 99.2 1.3E-10 2.8E-15 110.1 12.0 283 159-499 24-340 (1081)
281 KOG4532 WD40-like repeat conta 99.2 5.4E-09 1.2E-13 87.5 19.4 235 231-500 83-333 (344)
282 COG5170 CDC55 Serine/threonine 99.2 5.7E-10 1.2E-14 95.1 13.9 268 159-452 26-367 (460)
283 COG4946 Uncharacterized protei 99.2 9.5E-09 2.1E-13 92.8 22.3 143 154-317 354-501 (668)
284 PLN02919 haloacid dehalogenase 99.2 7.3E-08 1.6E-12 102.3 31.8 260 163-454 571-890 (1057)
285 KOG4532 WD40-like repeat conta 99.2 1.2E-08 2.6E-13 85.4 20.2 243 163-454 71-333 (344)
286 PF15492 Nbas_N: Neuroblastoma 99.2 3.3E-08 7.3E-13 84.2 22.6 218 226-454 3-261 (282)
287 PRK04043 tolB translocation pr 99.1 6.8E-08 1.5E-12 92.3 25.7 210 242-499 169-399 (419)
288 PF07433 DUF1513: Protein of u 99.1 2.2E-07 4.8E-12 81.8 25.2 205 161-383 6-257 (305)
289 KOG1832 HIV-1 Vpr-binding prot 99.1 1.1E-10 2.4E-15 112.7 4.9 201 150-382 1092-1300(1516)
290 KOG4649 PQQ (pyrrolo-quinoline 99.1 3.6E-07 7.7E-12 76.6 24.3 189 171-381 23-223 (354)
291 PF08450 SGL: SMP-30/Gluconola 99.1 6.1E-07 1.3E-11 80.1 28.3 217 225-485 4-243 (246)
292 KOG3914 WD repeat protein WDR4 99.0 2.8E-09 6.1E-14 94.3 12.0 164 161-338 64-228 (390)
293 KOG1912 WD40 repeat protein [G 99.0 6.2E-08 1.4E-12 92.9 21.7 283 158-499 14-365 (1062)
294 PF07433 DUF1513: Protein of u 99.0 5.8E-07 1.2E-11 79.3 26.0 227 223-485 7-274 (305)
295 PF08450 SGL: SMP-30/Gluconola 99.0 1.1E-06 2.5E-11 78.4 28.5 194 164-384 4-223 (246)
296 PF13360 PQQ_2: PQQ-like domai 99.0 2.2E-07 4.8E-12 82.7 23.8 215 180-455 2-233 (238)
297 PRK04043 tolB translocation pr 99.0 4.9E-07 1.1E-11 86.5 26.5 152 222-377 189-361 (419)
298 KOG3914 WD repeat protein WDR4 99.0 6.7E-09 1.4E-13 92.0 12.0 159 223-383 65-233 (390)
299 KOG4714 Nucleoporin [Nuclear s 99.0 1.6E-08 3.5E-13 84.3 12.8 205 162-374 39-255 (319)
300 PRK11138 outer membrane biogen 99.0 6.6E-07 1.4E-11 85.9 25.9 256 171-496 120-392 (394)
301 PRK11138 outer membrane biogen 98.9 5.1E-07 1.1E-11 86.7 24.4 272 170-501 68-356 (394)
302 KOG2066 Vacuolar assembly/sort 98.9 1.3E-07 2.8E-12 91.4 19.3 155 155-334 54-234 (846)
303 KOG4190 Uncharacterized conser 98.9 1.1E-08 2.3E-13 94.2 10.7 250 149-448 774-1032(1034)
304 KOG3617 WD40 and TPR repeat-co 98.9 1.6E-07 3.4E-12 91.1 18.7 110 162-292 18-131 (1416)
305 PF13360 PQQ_2: PQQ-like domai 98.9 8.8E-07 1.9E-11 78.9 22.8 189 170-380 35-237 (238)
306 KOG2695 WD40 repeat protein [G 98.9 7.6E-09 1.7E-13 89.7 8.6 120 219-339 251-382 (425)
307 KOG4714 Nucleoporin [Nuclear s 98.9 3.8E-08 8.3E-13 82.1 11.7 171 146-334 76-255 (319)
308 KOG0309 Conserved WD40 repeat- 98.9 2.8E-08 6.1E-13 94.6 12.2 179 162-356 70-257 (1081)
309 PF08553 VID27: VID27 cytoplas 98.8 3.3E-06 7.2E-11 84.7 26.9 135 239-373 501-647 (794)
310 PF15492 Nbas_N: Neuroblastoma 98.8 3.1E-06 6.7E-11 72.4 22.7 196 268-499 3-260 (282)
311 KOG1275 PAB-dependent poly(A) 98.8 1.1E-07 2.3E-12 93.1 15.6 184 231-451 146-341 (1118)
312 PF00400 WD40: WD domain, G-be 98.8 5.3E-09 1.2E-13 63.0 4.5 38 150-187 2-39 (39)
313 KOG0882 Cyclophilin-related pe 98.8 8.9E-08 1.9E-12 86.2 13.7 255 218-501 7-308 (558)
314 KOG2066 Vacuolar assembly/sort 98.8 4E-07 8.6E-12 88.1 18.8 187 220-453 39-234 (846)
315 KOG1645 RING-finger-containing 98.8 1.1E-06 2.3E-11 78.3 20.0 149 139-294 116-268 (463)
316 KOG1832 HIV-1 Vpr-binding prot 98.8 5.5E-09 1.2E-13 101.4 5.4 215 215-485 1096-1319(1516)
317 KOG0882 Cyclophilin-related pe 98.8 9.2E-08 2E-12 86.1 12.7 274 157-454 7-307 (558)
318 KOG2695 WD40 repeat protein [G 98.8 4.2E-08 9.1E-13 85.2 9.3 156 227-386 218-389 (425)
319 KOG3621 WD40 repeat-containing 98.8 3.6E-06 7.8E-11 80.6 22.8 144 158-320 32-185 (726)
320 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.9E-05 4E-10 74.5 27.7 260 168-488 1-348 (353)
321 KOG1275 PAB-dependent poly(A) 98.7 2.4E-07 5.1E-12 90.7 14.1 178 170-371 146-340 (1118)
322 PF00400 WD40: WD domain, G-be 98.7 4.8E-08 1E-12 58.7 5.8 39 252-290 1-39 (39)
323 PF06433 Me-amine-dh_H: Methyl 98.7 2.4E-05 5.1E-10 70.1 23.7 268 181-502 17-324 (342)
324 PF04053 Coatomer_WDAD: Coatom 98.7 1.3E-05 2.9E-10 76.4 23.4 223 156-453 29-263 (443)
325 KOG1920 IkappaB kinase complex 98.6 9.6E-06 2.1E-10 82.5 22.7 261 159-480 68-347 (1265)
326 PRK02888 nitrous-oxide reducta 98.6 5E-05 1.1E-09 73.7 25.3 250 174-453 69-405 (635)
327 KOG2114 Vacuolar assembly/sort 98.5 4.8E-05 1E-09 74.7 23.1 201 161-384 27-254 (933)
328 KOG3617 WD40 and TPR repeat-co 98.5 3.3E-06 7.1E-11 82.3 14.6 109 223-333 18-131 (1416)
329 KOG1920 IkappaB kinase complex 98.5 2E-05 4.3E-10 80.3 19.8 231 220-497 68-321 (1265)
330 PF06433 Me-amine-dh_H: Methyl 98.5 0.00033 7.1E-09 63.0 25.4 249 162-464 38-331 (342)
331 cd00216 PQQ_DH Dehydrogenases 98.5 0.00025 5.4E-09 70.0 27.4 237 172-456 111-428 (488)
332 cd00216 PQQ_DH Dehydrogenases 98.5 0.00014 3.1E-09 71.6 25.7 197 171-383 61-329 (488)
333 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00048 1E-08 58.4 24.1 104 171-294 63-167 (354)
334 PF08596 Lgl_C: Lethal giant l 98.4 4.7E-05 1E-09 71.8 20.4 223 161-384 3-301 (395)
335 KOG2114 Vacuolar assembly/sort 98.4 0.0001 2.2E-09 72.6 22.5 190 227-454 30-245 (933)
336 PF08553 VID27: VID27 cytoplas 98.4 0.00017 3.7E-09 72.8 23.2 132 282-451 502-646 (794)
337 PF11768 DUF3312: Protein of u 98.3 0.00038 8.2E-09 66.2 23.7 75 420-500 257-331 (545)
338 KOG1645 RING-finger-containing 98.3 2.4E-05 5.2E-10 70.0 14.8 93 244-337 175-270 (463)
339 PF03178 CPSF_A: CPSF A subuni 98.3 0.00068 1.5E-08 63.2 25.3 214 242-494 2-261 (321)
340 PRK02888 nitrous-oxide reducta 98.3 8.2E-05 1.8E-09 72.3 18.5 181 167-374 200-405 (635)
341 PF14583 Pectate_lyase22: Olig 98.3 0.0033 7.2E-08 57.8 30.3 301 135-496 6-379 (386)
342 PF00780 CNH: CNH domain; Int 98.3 0.0015 3.2E-08 59.5 26.1 146 169-339 5-171 (275)
343 KOG1008 Uncharacterized conser 98.3 2.9E-07 6.4E-12 86.7 1.6 200 221-453 57-276 (783)
344 PF11768 DUF3312: Protein of u 98.3 1.5E-05 3.2E-10 75.4 12.6 75 157-252 257-331 (545)
345 PF08596 Lgl_C: Lethal giant l 98.2 0.00098 2.1E-08 63.0 23.4 225 222-485 3-324 (395)
346 PF04053 Coatomer_WDAD: Coatom 98.2 0.00044 9.5E-09 66.2 20.6 219 220-497 32-261 (443)
347 PF02897 Peptidase_S9_N: Proly 98.1 0.0087 1.9E-07 58.2 29.2 202 161-382 125-366 (414)
348 PF06977 SdiA-regulated: SdiA- 98.1 0.0027 5.8E-08 55.7 22.1 198 154-370 16-247 (248)
349 PF04841 Vps16_N: Vps16, N-ter 98.1 0.002 4.3E-08 61.8 23.1 67 226-294 34-111 (410)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.014 3.1E-07 58.0 29.8 199 171-380 69-340 (527)
351 KOG3621 WD40 repeat-containing 98.0 0.0001 2.3E-09 70.9 13.2 116 219-334 32-155 (726)
352 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0024 5.1E-08 60.2 21.7 84 421-505 306-405 (415)
353 COG3391 Uncharacterized conser 98.0 0.012 2.7E-07 56.0 27.1 195 222-454 75-285 (381)
354 KOG1008 Uncharacterized conser 98.0 2.6E-06 5.6E-11 80.5 1.6 199 158-374 55-276 (783)
355 COG0823 TolB Periplasmic compo 98.0 0.0013 2.8E-08 62.8 19.6 156 220-377 192-362 (425)
356 KOG2395 Protein involved in va 98.0 0.00043 9.2E-09 64.7 15.4 142 231-373 344-500 (644)
357 PF03178 CPSF_A: CPSF A subuni 97.9 0.0019 4.2E-08 60.1 20.1 174 285-499 3-203 (321)
358 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0015 3.2E-08 48.3 14.9 100 265-369 2-110 (111)
359 PF15390 DUF4613: Domain of un 97.9 0.011 2.3E-07 56.7 23.5 182 154-362 14-220 (671)
360 COG3391 Uncharacterized conser 97.9 0.024 5.3E-07 54.0 26.9 243 222-500 32-285 (381)
361 PF06977 SdiA-regulated: SdiA- 97.9 0.015 3.3E-07 51.0 23.8 201 218-449 19-247 (248)
362 COG3490 Uncharacterized protei 97.9 0.0073 1.6E-07 52.3 20.1 204 162-382 70-319 (366)
363 PRK13616 lipoprotein LpqB; Pro 97.9 0.0015 3.3E-08 65.2 19.0 183 159-368 349-563 (591)
364 PF07995 GSDH: Glucose / Sorbo 97.9 0.012 2.5E-07 54.9 23.6 70 423-493 253-330 (331)
365 COG3386 Gluconolactonase [Carb 97.9 0.018 3.9E-07 52.5 24.0 194 166-384 31-253 (307)
366 COG0823 TolB Periplasmic compo 97.8 0.0017 3.7E-08 62.0 17.9 202 244-489 175-391 (425)
367 PF00780 CNH: CNH domain; Int 97.8 0.023 5.1E-07 51.6 25.2 229 231-501 6-258 (275)
368 KOG4640 Anaphase-promoting com 97.8 0.00012 2.6E-09 69.7 9.3 94 220-314 20-115 (665)
369 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0093 2E-07 56.4 22.2 67 229-297 1-76 (353)
370 PF02897 Peptidase_S9_N: Proly 97.8 0.042 9.1E-07 53.4 29.4 242 222-502 125-408 (414)
371 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.031 6.7E-07 55.6 26.4 151 172-338 121-338 (527)
372 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0033 7.1E-08 46.5 14.3 99 223-328 2-109 (111)
373 KOG4640 Anaphase-promoting com 97.8 0.00019 4E-09 68.4 9.7 96 157-272 18-115 (665)
374 PF04841 Vps16_N: Vps16, N-ter 97.7 0.047 1E-06 52.5 28.7 157 221-383 81-256 (410)
375 KOG2079 Vacuolar assembly/sort 97.7 0.00099 2.1E-08 67.6 14.7 102 170-291 98-202 (1206)
376 smart00320 WD40 WD40 repeats. 97.7 5.7E-05 1.2E-09 44.6 4.0 36 152-187 5-40 (40)
377 KOG2079 Vacuolar assembly/sort 97.7 0.0013 2.9E-08 66.8 15.1 100 231-332 98-202 (1206)
378 COG3386 Gluconolactonase [Carb 97.7 0.038 8.2E-07 50.4 22.9 223 227-489 31-277 (307)
379 KOG1897 Damage-specific DNA bi 97.6 0.1 2.3E-06 53.3 27.2 287 159-500 530-858 (1096)
380 KOG2395 Protein involved in va 97.6 0.0014 3.1E-08 61.3 13.0 142 272-452 343-500 (644)
381 COG3490 Uncharacterized protei 97.6 0.014 3E-07 50.6 17.8 101 223-323 70-180 (366)
382 smart00320 WD40 WD40 repeats. 97.5 0.00027 5.9E-09 41.5 4.9 38 253-290 3-40 (40)
383 PF05694 SBP56: 56kDa selenium 97.4 0.037 7.9E-07 51.7 19.7 245 231-497 86-400 (461)
384 PRK13616 lipoprotein LpqB; Pro 97.4 0.023 4.9E-07 57.0 19.0 146 221-372 350-524 (591)
385 KOG2444 WD40 repeat protein [G 97.4 0.00037 8.1E-09 58.0 5.4 140 277-454 33-179 (238)
386 PRK10115 protease 2; Provision 97.2 0.34 7.3E-06 50.2 29.8 192 160-373 127-344 (686)
387 COG3204 Uncharacterized protei 97.2 0.13 2.8E-06 45.3 20.6 199 258-485 81-301 (316)
388 KOG3630 Nuclear pore complex, 97.2 0.0095 2.1E-07 61.2 13.9 109 264-372 102-227 (1405)
389 KOG1897 Damage-specific DNA bi 97.1 0.42 9E-06 49.2 27.8 197 160-374 488-702 (1096)
390 PHA02713 hypothetical protein; 97.1 0.074 1.6E-06 53.5 19.9 64 433-500 463-535 (557)
391 PHA02713 hypothetical protein; 97.1 0.17 3.6E-06 51.1 22.1 64 231-296 303-379 (557)
392 PF15390 DUF4613: Domain of un 97.1 0.013 2.9E-07 56.1 13.2 156 305-500 20-188 (671)
393 KOG2444 WD40 repeat protein [G 97.1 0.0034 7.3E-08 52.5 8.1 105 171-293 70-178 (238)
394 TIGR02604 Piru_Ver_Nterm putat 97.0 0.37 8.1E-06 45.8 25.3 139 222-362 15-201 (367)
395 PF14583 Pectate_lyase22: Olig 96.9 0.33 7.2E-06 45.1 24.2 221 227-487 42-302 (386)
396 KOG4441 Proteins containing BT 96.9 0.21 4.5E-06 50.3 21.0 190 169-378 283-504 (571)
397 COG3204 Uncharacterized protei 96.9 0.25 5.4E-06 43.5 19.1 164 155-336 81-266 (316)
398 PRK10115 protease 2; Provision 96.9 0.63 1.4E-05 48.2 32.2 110 221-332 127-254 (686)
399 PF10647 Gmad1: Lipoprotein Lp 96.9 0.3 6.6E-06 43.5 21.1 141 161-323 25-184 (253)
400 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0048 1E-07 38.0 5.6 33 159-192 11-43 (47)
401 PF05096 Glu_cyclase_2: Glutam 96.9 0.29 6.3E-06 43.0 23.5 196 253-485 34-248 (264)
402 PF10168 Nup88: Nuclear pore c 96.8 0.61 1.3E-05 48.1 22.9 75 220-295 84-182 (717)
403 KOG4441 Proteins containing BT 96.8 0.19 4.2E-06 50.5 19.3 144 230-376 283-455 (571)
404 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0068 1.5E-07 37.3 5.5 34 220-254 11-44 (47)
405 PF05096 Glu_cyclase_2: Glutam 96.7 0.4 8.7E-06 42.1 20.3 157 222-382 46-212 (264)
406 TIGR03074 PQQ_membr_DH membran 96.6 1.1 2.5E-05 46.6 24.8 240 171-455 194-480 (764)
407 TIGR03074 PQQ_membr_DH membran 96.6 0.68 1.5E-05 48.1 22.2 70 232-301 194-287 (764)
408 PF10647 Gmad1: Lipoprotein Lp 96.5 0.32 6.9E-06 43.4 17.0 152 306-494 25-192 (253)
409 KOG3616 Selective LIM binding 96.5 0.26 5.6E-06 48.9 17.1 69 158-248 13-81 (1636)
410 PRK13684 Ycf48-like protein; P 96.5 0.77 1.7E-05 42.9 20.4 113 262-376 172-290 (334)
411 COG5167 VID27 Protein involved 96.4 0.2 4.3E-06 47.4 15.1 141 231-373 478-632 (776)
412 PF05694 SBP56: 56kDa selenium 96.3 0.78 1.7E-05 43.2 18.5 195 273-502 86-346 (461)
413 KOG2280 Vacuolar assembly/sort 96.3 0.32 6.9E-06 48.5 16.8 166 284-454 64-248 (829)
414 PHA03098 kelch-like protein; P 96.3 0.69 1.5E-05 46.7 20.3 104 231-337 294-418 (534)
415 PF14870 PSII_BNR: Photosynthe 96.3 0.84 1.8E-05 41.6 32.5 278 159-495 16-301 (302)
416 PF14781 BBS2_N: Ciliary BBSom 96.2 0.32 7E-06 37.5 12.8 113 267-380 3-132 (136)
417 KOG3630 Nuclear pore complex, 96.2 0.11 2.5E-06 53.8 13.3 197 163-362 45-261 (1405)
418 KOG1916 Nuclear protein, conta 96.1 0.0058 1.3E-07 61.1 4.1 203 153-374 126-375 (1283)
419 KOG4499 Ca2+-binding protein R 96.1 0.74 1.6E-05 39.2 17.5 124 262-387 108-255 (310)
420 KOG2247 WD40 repeat-containing 96.1 0.002 4.3E-08 59.9 0.7 145 160-325 35-180 (615)
421 PLN00033 photosystem II stabil 96.0 0.9 2E-05 43.3 17.7 144 222-370 240-396 (398)
422 KOG4499 Ca2+-binding protein R 95.9 0.89 1.9E-05 38.7 18.8 219 232-489 27-276 (310)
423 COG5167 VID27 Protein involved 95.9 0.052 1.1E-06 51.1 8.9 142 170-333 478-632 (776)
424 PHA02790 Kelch-like protein; P 95.7 1.1 2.5E-05 44.3 18.2 141 231-375 318-472 (480)
425 PHA02790 Kelch-like protein; P 95.7 1.9 4E-05 42.8 19.5 139 231-375 271-425 (480)
426 PHA03098 kelch-like protein; P 95.6 0.76 1.6E-05 46.4 17.1 142 231-376 342-514 (534)
427 PF08728 CRT10: CRT10; InterP 95.5 1.3 2.9E-05 44.9 17.5 169 159-332 40-245 (717)
428 TIGR02604 Piru_Ver_Nterm putat 95.4 0.69 1.5E-05 44.0 15.0 143 160-323 14-202 (367)
429 COG3292 Predicted periplasmic 95.3 3 6.5E-05 40.6 20.3 309 159-498 164-491 (671)
430 PRK13684 Ycf48-like protein; P 95.3 2.6 5.6E-05 39.5 30.0 155 304-496 172-329 (334)
431 PF14870 PSII_BNR: Photosynthe 95.2 2.4 5.2E-05 38.6 29.1 151 224-377 107-264 (302)
432 TIGR03118 PEPCTERM_chp_1 conse 95.1 2.4 5.1E-05 38.0 19.5 218 264-503 24-284 (336)
433 PF08728 CRT10: CRT10; InterP 94.9 1.1 2.4E-05 45.4 15.1 74 424-497 165-245 (717)
434 KOG2280 Vacuolar assembly/sort 94.9 4.8 0.0001 40.6 18.8 180 180-383 63-256 (829)
435 PF14727 PHTB1_N: PTHB1 N-term 94.7 4.1 9E-05 39.0 29.9 146 170-332 36-203 (418)
436 COG4590 ABC-type uncharacteriz 94.7 0.37 8E-06 45.0 10.2 161 254-454 212-388 (733)
437 KOG2247 WD40 repeat-containing 94.6 0.0084 1.8E-07 55.9 -0.3 148 222-371 36-186 (615)
438 PF14781 BBS2_N: Ciliary BBSom 94.6 1.7 3.6E-05 33.7 13.3 124 163-300 2-133 (136)
439 COG5276 Uncharacterized conser 94.5 3.2 7E-05 36.8 23.6 152 223-381 89-249 (370)
440 PF12234 Rav1p_C: RAVE protein 94.5 0.94 2E-05 45.4 13.4 108 224-332 33-155 (631)
441 PF13449 Phytase-like: Esteras 94.4 4.3 9.3E-05 37.9 18.1 158 305-485 20-232 (326)
442 KOG1900 Nuclear pore complex, 94.4 2.3 5E-05 45.6 16.3 160 280-454 95-274 (1311)
443 PF12234 Rav1p_C: RAVE protein 94.4 1.7 3.7E-05 43.7 14.9 108 264-372 31-155 (631)
444 PF07569 Hira: TUP1-like enhan 94.4 0.55 1.2E-05 40.7 10.3 83 167-255 18-100 (219)
445 PF10313 DUF2415: Uncharacteri 94.3 0.2 4.2E-06 29.9 5.0 31 160-190 1-34 (43)
446 PF10313 DUF2415: Uncharacteri 94.1 0.13 2.8E-06 30.6 4.0 33 468-501 1-36 (43)
447 PF10433 MMS1_N: Mono-function 94.0 7.3 0.00016 39.0 24.5 252 168-477 219-503 (504)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 93.9 0.76 1.7E-05 43.8 10.9 84 218-301 305-407 (415)
449 PF10446 DUF2457: Protein of u 93.8 0.032 7E-07 51.5 1.6 12 230-241 190-201 (458)
450 PF07569 Hira: TUP1-like enhan 93.7 0.48 1E-05 41.0 8.7 28 270-297 18-45 (219)
451 KOG1900 Nuclear pore complex, 93.6 8.4 0.00018 41.7 18.5 135 240-374 97-273 (1311)
452 PF07995 GSDH: Glucose / Sorbo 93.5 2.1 4.6E-05 39.9 13.2 30 346-376 3-32 (331)
453 KOG2377 Uncharacterized conser 93.5 3.3 7.2E-05 39.1 13.7 142 309-487 27-173 (657)
454 COG1520 FOG: WD40-like repeat 93.3 7.7 0.00017 37.0 27.7 149 234-383 70-227 (370)
455 COG1520 FOG: WD40-like repeat 93.3 7.7 0.00017 37.0 26.7 192 173-383 70-278 (370)
456 KOG2377 Uncharacterized conser 93.2 1.5 3.2E-05 41.3 11.1 120 157-293 64-186 (657)
457 COG4257 Vgb Streptogramin lyas 93.1 5.7 0.00012 35.0 21.1 153 222-375 63-220 (353)
458 PF08801 Nucleoporin_N: Nup133 93.1 5.2 0.00011 39.0 15.8 31 424-454 191-221 (422)
459 COG5276 Uncharacterized conser 93.0 6.4 0.00014 35.1 26.7 154 159-337 86-245 (370)
460 TIGR03606 non_repeat_PQQ dehyd 92.8 10 0.00022 36.9 31.3 54 221-274 30-90 (454)
461 PF12657 TFIIIC_delta: Transcr 92.8 1.7 3.6E-05 36.2 10.3 30 424-453 87-122 (173)
462 COG3823 Glutamine cyclotransfe 92.7 5.5 0.00012 33.5 14.1 151 231-383 55-214 (262)
463 KOG4460 Nuclear pore complex, 92.6 11 0.00023 36.6 18.0 81 220-300 103-206 (741)
464 PF14761 HPS3_N: Hermansky-Pud 92.5 5.9 0.00013 33.7 14.6 102 233-336 29-166 (215)
465 PF12657 TFIIIC_delta: Transcr 92.3 1.4 3E-05 36.7 9.2 30 221-250 86-121 (173)
466 PLN00033 photosystem II stabil 92.0 12 0.00026 35.9 33.7 148 307-495 241-396 (398)
467 PF10168 Nup88: Nuclear pore c 91.8 18 0.00039 37.7 24.2 91 263-374 85-180 (717)
468 TIGR03118 PEPCTERM_chp_1 conse 91.4 11 0.00023 34.1 23.9 220 221-477 23-307 (336)
469 TIGR03548 mutarot_permut cycli 91.3 12 0.00027 34.8 23.2 102 273-375 72-196 (323)
470 PF13449 Phytase-like: Esteras 91.1 13 0.00029 34.6 18.2 120 158-282 18-166 (326)
471 KOG3616 Selective LIM binding 91.0 6 0.00013 39.9 12.9 70 219-291 13-82 (1636)
472 PF14761 HPS3_N: Hermansky-Pud 90.7 4.1 8.9E-05 34.6 10.2 113 347-499 20-164 (215)
473 KOG1983 Tomosyn and related SN 90.7 7.2 0.00016 42.3 14.6 32 159-190 35-66 (993)
474 PF14727 PHTB1_N: PTHB1 N-term 90.4 18 0.00038 34.9 24.4 142 232-374 37-205 (418)
475 COG4257 Vgb Streptogramin lyas 90.3 12 0.00027 33.0 15.9 194 264-496 63-260 (353)
476 KOG1898 Splicing factor 3b, su 90.2 15 0.00033 38.8 15.4 168 286-492 855-1042(1205)
477 PLN02153 epithiospecifier prot 90.1 17 0.00036 34.2 24.1 66 231-297 85-172 (341)
478 KOG2063 Vacuolar assembly/sort 89.7 23 0.0005 37.5 16.5 80 166-254 21-100 (877)
479 COG4590 ABC-type uncharacteriz 89.6 1.6 3.5E-05 41.0 7.5 159 219-378 219-391 (733)
480 KOG1916 Nuclear protein, conta 89.5 0.54 1.2E-05 47.9 4.7 116 162-297 186-328 (1283)
481 PF11635 Med16: Mediator compl 89.4 32 0.00069 36.4 19.6 71 422-493 259-345 (753)
482 COG5290 IkappaB kinase complex 88.9 31 0.00066 35.5 17.1 202 154-357 107-349 (1243)
483 PF11715 Nup160: Nucleoporin N 88.6 3.7 8E-05 41.6 10.3 90 169-258 156-256 (547)
484 PF07676 PD40: WD40-like Beta 88.4 1.1 2.4E-05 26.1 4.0 29 467-495 8-38 (39)
485 KOG1189 Global transcriptional 87.7 0.51 1.1E-05 47.0 3.3 6 23-28 867-872 (960)
486 PF11715 Nup160: Nucleoporin N 87.6 2.8 6E-05 42.5 8.7 71 230-300 156-256 (547)
487 PF07676 PD40: WD40-like Beta 87.2 2 4.4E-05 25.0 4.6 30 157-186 6-38 (39)
488 COG3823 Glutamine cyclotransfe 87.1 17 0.00038 30.7 13.7 109 273-382 55-167 (262)
489 PF12768 Rax2: Cortical protei 86.7 18 0.00039 32.7 12.2 93 242-334 16-124 (281)
490 PF02333 Phytase: Phytase; In 86.1 31 0.00068 32.6 20.1 188 272-500 66-292 (381)
491 PLN02153 epithiospecifier prot 86.1 30 0.00066 32.5 23.6 65 231-296 32-113 (341)
492 TIGR02276 beta_rpt_yvtn 40-res 86.0 3.6 7.9E-05 24.2 5.4 41 230-271 1-42 (42)
493 PF12768 Rax2: Cortical protei 85.8 25 0.00054 31.8 12.6 113 183-314 18-146 (281)
494 TIGR02276 beta_rpt_yvtn 40-res 85.8 4.6 0.0001 23.8 5.8 41 272-313 1-42 (42)
495 PLN02193 nitrile-specifier pro 85.4 41 0.00088 33.4 24.9 225 231-494 175-459 (470)
496 PF03066 Nucleoplasmin: Nucleo 85.2 0.27 5.8E-06 39.3 0.0 41 39-79 109-149 (149)
497 KOG3522 Predicted guanine nucl 85.0 5.1 0.00011 41.0 8.5 172 170-363 546-725 (925)
498 TIGR03606 non_repeat_PQQ dehyd 84.9 41 0.00088 32.9 20.4 172 297-501 22-263 (454)
499 KOG1983 Tomosyn and related SN 84.2 37 0.0008 37.1 15.1 241 217-512 32-277 (993)
500 PF07250 Glyoxal_oxid_N: Glyox 84.1 20 0.00043 31.6 10.9 153 319-511 3-161 (243)
No 1
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.6e-59 Score=406.93 Aligned_cols=469 Identities=50% Similarity=0.829 Sum_probs=394.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCcccccCCCCCcccccccccCCHHHHHhH
Q 010296 1 MKYKNTKKKGPAPRGKGKFSINQDPFFAGEPKKRRKIDYDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRKR 80 (513)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ee~~~~~~~~ 80 (513)
||...+|+..+|.+++...+....||...++..++..-.++++.++.++|++++- ...++++|+|.++|+..++|.|
T Consensus 1 mk~~~kkkg~~a~~~gK~~~~~~~~~~~~~~~~~~~~~~~~ed~eei~Sd~Een~---~~g~~e~e~e~~~Eta~ekr~R 77 (479)
T KOG0299|consen 1 MKDGKKKKGKGAKRKGKPGSGGGKPFKSEEEAERKKNRDDDEDAEEIESDEEENS---LAGEEEEEDEFEEETAGEKRLR 77 (479)
T ss_pred CCccccccCccccCCCCCCCCCCCCccccchhhccccCCchhhhhhhcccccccc---ccchhhhcccchhcchhHHHHH
Confidence 6777444445667777777888888877666555211111111222222211111 1115556667778899999999
Q ss_pred HHHHHHHHHHHHHhhhccccccCcccccccccccchhHHHHHHhhHHHHHhcCceeEEeeccccCCCcccchhhhhccCC
Q 010296 81 VATAYLEKIREIARREKEEEEDGDEGREVGEKEGERDSLVAKILQQEQLEESGRVRRVIASRVQKPEATDEFRVLLKHRQ 160 (513)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (513)
+++.++.+.++..+ +..+ .....+..++..|+.++.+..|+.++.++.++..+.... ++.+..|.-
T Consensus 78 lA~e~L~~i~e~~E-~~~d------------~~~~~~e~va~rLked~le~~Gr~~r~~a~~v~~~~s~~-~~~~~~H~~ 143 (479)
T KOG0299|consen 78 LAEEYLDEIREIEE-DNFD------------ADDLDDELVASRLKEDVLEQSGRVRRLVADKVQAPESSD-FRVIGKHQL 143 (479)
T ss_pred HHHHHHHHHHhhhh-cccc------------cchhhHHHHHHHHHHHHHHhcceeehhhhhhcccccccc-ceeeccccC
Confidence 99999998872221 1110 112233689999999999999999999999999999888 899999999
Q ss_pred CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296 161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL 240 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 240 (513)
+|+||+++|+.+++++++.+++|.-|++.+++....+++...++..+........ ..|...|.+++.+++|+|||+|+.
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCcEEEecCC
Confidence 9999999999999999999999999999999998888888777776665544444 599999999999999999999999
Q ss_pred CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEE
Q 010296 241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLT 320 (513)
Q Consensus 241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 320 (513)
|..|.||+..+.+.++.+.+|.+.|.+++|-.....|++++.|++|++|++.....+.++.+|+..|..|......++++
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEE
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999998899986
Q ss_pred Ee-CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcC
Q 010296 321 VG-RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEG 399 (513)
Q Consensus 321 ~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
++ .|+++++|++.....+.+.++...+.|++|..+..|++|+.+|.|.+|++.+.+|+++....|+.....
T Consensus 303 VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~-------- 374 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL-------- 374 (479)
T ss_pred eccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCc--------
Confidence 55 999999999999899999999999999999999999999999999999999999999999888754221
Q ss_pred ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC
Q 010296 400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG 479 (513)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 479 (513)
....++.||++|+..|...++|+|+.+|.|++|.+..+...+.++..++..+.|++++|+++|
T Consensus 375 -----------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 375 -----------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred -----------------cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence 012333689999999999999999999999999999998889999999999999999999999
Q ss_pred CEEEEEecCCCcccccccCCCcccceEEEeccc
Q 010296 480 QFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKL 512 (513)
Q Consensus 480 ~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~~ 512 (513)
++|++|.|...++..|-+.+..++...+.++.|
T Consensus 438 k~ivagiGkEhRlGRW~~~k~~~~~~~v~~~~l 470 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRWWCLKSGKNSGVVSPRRL 470 (479)
T ss_pred CEEEEecccccccceeeEeecccccceeeeeee
Confidence 999999999999999999999999888887765
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-50 Score=344.41 Aligned_cols=292 Identities=24% Similarity=0.412 Sum_probs=258.7
Q ss_pred ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
..+-..+.||.++|.|++|+|+|..|+||+.|.++++||+.+.....+ ..+|..-|.|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvaw 165 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAW 165 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEE
Confidence 456677899999999999999999999999999999999999887664 4899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCccee-eeccCcCCCeEEEEEec-----CCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGHRGPVSCLTFRQ-----GTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
+|||+.||+|+.||.|++||..+++++ ..|.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+
T Consensus 166 sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 166 SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 999999999999999999999988765 67999999999999965 567899999999999999999999999999
Q ss_pred ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec-----------C---------------
Q 010296 303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS-----------N--------------- 355 (513)
Q Consensus 303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~-----------~--------------- 355 (513)
|..+|+|+.|-.++.+++++.|++|++|+...+... .+.+|...|+.++.+. .
T Consensus 246 HT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 246 HTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred CccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 999999999998999999999999999999887655 6788888888887761 0
Q ss_pred -----------CeEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc
Q 010296 356 -----------DEFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS 423 (513)
Q Consensus 356 -----------~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 423 (513)
.++++|+.|.++.+|+....+ ++..+ .+|..
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm-------------------------------------tgHq~ 368 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM-------------------------------------TGHQA 368 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEecccccccchhhh-------------------------------------hchhh
Confidence 148999999999999976543 55544 44555
Q ss_pred eEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
-|+.+.||||++++|+++-|..|++|+-.++ +.+..+.. |-++|..|+|+.|.++|+++ +.|.+|++|++.+.
T Consensus 369 lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRG--Hv~~VYqvawsaDsRLlVS~-SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRG--HVAAVYQVAWSADSRLLVSG-SKDSTLKVWDVRTK 441 (480)
T ss_pred heeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhh--ccceeEEEEeccCccEEEEc-CCCceEEEEEeeee
Confidence 5999999999999999999999999999998 55555554 89999999999999999998 99999999998754
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-49 Score=342.65 Aligned_cols=280 Identities=19% Similarity=0.328 Sum_probs=259.7
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC--CCE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD--GRY 234 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~ 234 (513)
+-+.+|..+.|++++..|+||+.+|.++||+..+...+.++ .+|...|.++.|+|. +..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-------------------~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-------------------RGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-------------------eccccceeeEEEccCCCccc
Confidence 66889999999999999999999999999999998776654 899999999999996 668
Q ss_pred EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296 235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR 314 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 314 (513)
||+|+.||++++|++.+..++..+.+|...|..++|+|+|++|+|++.|.+-++||++++..+....+|...|.+++|++
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred eeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCC
Q 010296 315 KERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGL 391 (513)
Q Consensus 315 ~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 391 (513)
+|.++ +|+.|..-+|||++++.++ .+.+|...|..+.|+|+|+ +++|+.|++++|||++...+++++.
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip--------- 384 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP--------- 384 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---------
Confidence 99777 8889999999999999887 6778999999999999997 8899999999999999999988874
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEE
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFV 470 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v 470 (513)
+|..-|+.++|+| .|.+|+|++.|++++||...+. .+++.+.. |.+.|
T Consensus 385 ----------------------------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaG--He~kV 433 (459)
T KOG0272|consen 385 ----------------------------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAG--HEGKV 433 (459)
T ss_pred ----------------------------cccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcC--Cccce
Confidence 4444599999999 7899999999999999999888 66666665 89999
Q ss_pred EEEEeecCCCEEEEEecCCCcccccc
Q 010296 471 NSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 471 ~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.++.++|++.+++++ +.|.++++|.
T Consensus 434 ~s~Dis~d~~~i~t~-s~DRT~KLW~ 458 (459)
T KOG0272|consen 434 ISLDISPDSQAIATS-SFDRTIKLWR 458 (459)
T ss_pred EEEEeccCCceEEEe-ccCceeeecc
Confidence 999999999999999 9999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-49 Score=337.35 Aligned_cols=296 Identities=26% Similarity=0.411 Sum_probs=264.9
Q ss_pred eccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296 140 ASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ 219 (513)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (513)
..++|++....+..+.++|...|.|++|+|||+.||+|+.||+|++||..+++++-. .+.+|
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~------------------~l~gH 199 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR------------------ALRGH 199 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc------------------cccCc
Confidence 456899999999999999999999999999999999999999999999999887653 36899
Q ss_pred cccEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 220 SKHILALAVSS-----DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 220 ~~~v~~~~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
...|++++|.| ..++||+++.||.|+|||+..+.++..+.+|+.+|+|+.|-.+ .+|++++.|++|++|+...|
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence 99999999987 5679999999999999999999999999999999999999765 48999999999999999999
Q ss_pred ceeEEeecccCCeEEEEeeCC-------------------------------------CeEEEEeCCCcEEEEecCCCe-
Q 010296 295 AYISTLFGHQSEVLTIDCLRK-------------------------------------ERVLTVGRDRSMQLWKVPEES- 336 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~-------------------------------------~~~~~~~~d~~i~iwd~~~~~- 336 (513)
.+...+.+|...|+.++.+.+ .++++++.|.++.+|+....+
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 999999999999999988711 148899999999999986544
Q ss_pred ee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC
Q 010296 337 RL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG 414 (513)
Q Consensus 337 ~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 414 (513)
++ ...+|..-|..+.|+|+++ +++++.|..|++|+.++|+.+.++.
T Consensus 359 pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-------------------------------- 406 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-------------------------------- 406 (480)
T ss_pred chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--------------------------------
Confidence 33 6778999999999999997 6799999999999999999988874
Q ss_pred CcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEEecCCCccc
Q 010296 415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVGQEPRLG 493 (513)
Q Consensus 415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~ 493 (513)
+|-..|+.++|+.|.++|++|+.|.++++|++++. +....++ |...|.++.|+|||+.+++| |.|..++
T Consensus 407 -----GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk----Kl~~DLpGh~DEVf~vDwspDG~rV~sg-gkdkv~~ 476 (480)
T KOG0271|consen 407 -----GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK----KLKQDLPGHADEVFAVDWSPDGQRVASG-GKDKVLR 476 (480)
T ss_pred -----hccceeEEEEeccCccEEEEcCCCceEEEEEeeee----eecccCCCCCceEEEEEecCCCceeecC-CCceEEE
Confidence 45555999999999999999999999999999987 2333333 89999999999999999998 9999999
Q ss_pred ccc
Q 010296 494 RWG 496 (513)
Q Consensus 494 ~W~ 496 (513)
+|.
T Consensus 477 lw~ 479 (480)
T KOG0271|consen 477 LWR 479 (480)
T ss_pred eec
Confidence 995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-45 Score=302.73 Aligned_cols=285 Identities=24% Similarity=0.430 Sum_probs=255.0
Q ss_pred hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
++|++|.+.|+++.|++|+++|++++.||.+.|||.-+....+.+ .-....|..++|+|.|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-------------------pl~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-------------------PLPSSWVMTCAYSPSG 109 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-------------------ecCceeEEEEEECCCC
Confidence 789999999999999999999999999999999999887766544 2345679999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCc------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296 233 RYLASGGLDRHIHLWDTRIQ------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE 306 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 306 (513)
+++|+|+.|+...||++.+. ...+.+.+|.+.+.|+.|.++ .+|+|++.|.+..+||+.+++.+..|.+|.+.
T Consensus 110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD 188 (343)
T KOG0286|consen 110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGD 188 (343)
T ss_pred CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCccc
Confidence 99999999999999999855 345678999999999999884 67999999999999999999999999999999
Q ss_pred eEEEEeeC-CC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEee
Q 010296 307 VLTIDCLR-KE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVK 382 (513)
Q Consensus 307 v~~~~~~~-~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~ 382 (513)
|.+++++| ++ .|++++.|+..++||++.+... .|.+|...|.++.|.|+|. |++|+.|+++++||++..+.+..+.
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 99999999 54 7789999999999999998766 7899999999999999996 9999999999999999999888876
Q ss_pred cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY 462 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~ 462 (513)
.. .....|++++||..|++|++|..|.++.+||.-.+ .....+.
T Consensus 269 ~~-----------------------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~ 312 (343)
T KOG0286|consen 269 HD-----------------------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA 312 (343)
T ss_pred cC-----------------------------------cccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee
Confidence 32 22234999999999999999999999999999877 3444454
Q ss_pred ecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 463 NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 463 ~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
. |...|+|+..+|||..+++| +.|..|+||.
T Consensus 313 G--HeNRvScl~~s~DG~av~Tg-SWDs~lriW~ 343 (343)
T KOG0286|consen 313 G--HENRVSCLGVSPDGMAVATG-SWDSTLRIWA 343 (343)
T ss_pred c--cCCeeEEEEECCCCcEEEec-chhHheeecC
Confidence 4 99999999999999999999 9999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-44 Score=311.59 Aligned_cols=253 Identities=20% Similarity=0.333 Sum_probs=234.2
Q ss_pred cccCCCcccchhhhhccCCCeEEEEECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296 142 RVQKPEATDEFRVLLKHRQSVTAVALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ 219 (513)
Q Consensus 142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (513)
++|..+....+.+|.+|++.|.++.|+|. +..||||+.||++++|++.+...+.. +.+|
T Consensus 200 kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-------------------l~gH 260 (459)
T KOG0272|consen 200 KVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-------------------LEGH 260 (459)
T ss_pred eEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh-------------------hhcc
Confidence 46788888999999999999999999997 66899999999999999998777664 4799
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 299 (513)
...|..++|+|+|++|+|++.|.+-++||+.++..+....+|...|.+++|.|+|.++++|+.|..-+|||+++++++..
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~ 340 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF 340 (459)
T ss_pred hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec-CCe-EEEEeCCCCEEEEecCCC
Q 010296 300 LFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS-NDE-FLSGSDDGSIELWSLLRK 375 (513)
Q Consensus 300 ~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~-~~~-~~~~~~dg~i~iwd~~~~ 375 (513)
+.+|..+|.++.|+|+|+. ++|+.|++++|||++....+ .+..|.+-|..+.|+| .|. |++++.|++++||...+.
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 9999999999999999965 58999999999999987765 6788999999999998 454 779999999999999999
Q ss_pred CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
.++..+. +|.+.|.++.+++++.+|+|++.|.++++|.
T Consensus 421 ~~~ksLa-------------------------------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLA-------------------------------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhc-------------------------------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9998884 4555599999999999999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-42 Score=281.16 Aligned_cols=293 Identities=24% Similarity=0.353 Sum_probs=244.1
Q ss_pred chhhhhccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 151 EFRVLLKHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 151 ~~~~~~~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
...++.+|++.|+.++..+. ...|++++.|.++.+|++...... ...++..+.+|...|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~--------------~G~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK--------------YGVPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc--------------cCceeeeeeccceEecceEEc
Confidence 34578899999999999987 567789999999999999765321 123445678999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc-cCCeE
Q 010296 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH-QSEVL 308 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~ 308 (513)
++|+++++++.|+++++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|++............ ...|.
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999998765443333322 78999
Q ss_pred EEEeeCCC---eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 309 TIDCLRKE---RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 309 ~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
|+.|+|+. .+++++.|++|++||+++.+.. .+.+|...++.+.++|+|. +++|+.||.+.+||++.++.++.+..
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a 232 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA 232 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC
Confidence 99999973 6779999999999999987766 7889999999999999997 66999999999999999999888754
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
.. .|.+++|+|+.-+|+.+... .|+|||+.+. ..+..+..
T Consensus 233 ~~--------------------------------------~v~sl~fspnrywL~~at~~-sIkIwdl~~~-~~v~~l~~ 272 (315)
T KOG0279|consen 233 FD--------------------------------------IVNSLCFSPNRYWLCAATAT-SIKIWDLESK-AVVEELKL 272 (315)
T ss_pred CC--------------------------------------eEeeEEecCCceeEeeccCC-ceEEEeccch-hhhhhccc
Confidence 33 39999999998777766544 5999999887 22222211
Q ss_pred c--C-----cccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 464 L--P-----LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 464 ~--~-----~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
- . ..-...+++|++||..|+++ -.|+.|++|.+.
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g-~td~~irv~qv~ 313 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAG-YTDNVIRVWQVA 313 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEee-ecCCcEEEEEee
Confidence 0 0 12235778999999999999 889999999764
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=287.40 Aligned_cols=294 Identities=25% Similarity=0.420 Sum_probs=259.5
Q ss_pred CcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296 147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL 226 (513)
Q Consensus 147 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 226 (513)
.+.+..+.+.+|.+.|.|+++.|...+|+||+.|++|+|||+.+++...++ .+|...|..+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------------------tGhi~~vr~v 199 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------------------TGHIETVRGV 199 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-------------------cchhheeeee
Confidence 356788999999999999999999999999999999999999999988755 7899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE 306 (513)
Q Consensus 227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 306 (513)
++|+-..||++++.|+.|+.||+...+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeC-CCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 307 VLTIDCLR-KERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 307 v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
|.++.+.| +.++++++.|++|++||++.++.. ....|...+.+++.+|... |++++.| .|+-|++..+..+..+
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl-- 356 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL-- 356 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc--
Confidence 99999988 679999999999999999988765 6778889999999999876 5555554 6999999999877765
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
..|...|.+++...|+ ++++|+.+|.|.+||.+++. .++....
T Consensus 357 -----------------------------------sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~-nyQ~~~t 399 (460)
T KOG0285|consen 357 -----------------------------------SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH-NYQRGQT 399 (460)
T ss_pred -----------------------------------ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCc-ccccccc
Confidence 3444449999998886 88999999999999999883 2333221
Q ss_pred ------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 464 ------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 464 ------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
+.....|.+.+|...|..|+++ ..|.+|++|.-...
T Consensus 400 ~vqpGSl~sEagI~as~fDktg~rlit~-eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 400 IVQPGSLESEAGIFASCFDKTGSRLITG-EADKTIKMYKEDEH 441 (460)
T ss_pred cccCCccccccceeEEeecccCceEEec-cCCcceEEEecccc
Confidence 1234568999999999999999 99999999965443
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-41 Score=285.98 Aligned_cols=288 Identities=24% Similarity=0.437 Sum_probs=260.3
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+ .+|...|..|+|+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-------------------rGHt~sv~di~~~ 159 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-------------------RGHTDSVFDISFD 159 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-------------------hccccceeEEEEe
Confidence 344567789999999999999999999999999999999999987644 8999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 230 SDGRYLASGGLDRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
..|++|++++.|-.+++||..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|.
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred cCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 9999999999999999999876 567888889999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecC---------------C-eEEEEeCCCCEEEE
Q 010296 309 TIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISN---------------D-EFLSGSDDGSIELW 370 (513)
Q Consensus 309 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~---------------~-~~~~~~~dg~i~iw 370 (513)
.+..+.||.++ +++.|.+|++|-+.++.+. .++.|..+|.|++|.|. + .+++++.|++|++|
T Consensus 240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 99999999777 7889999999999988665 67889999999998652 1 36799999999999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
|+.++.++.++ .+|..||..++|+|.|+||+++..|+++++||
T Consensus 320 dv~tg~cL~tL-------------------------------------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 320 DVSTGMCLFTL-------------------------------------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred eccCCeEEEEE-------------------------------------ecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 99999999998 56778899999999999999999999999999
Q ss_pred eCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
+++. +..+.+. +|...|+++.|+.+..++++| +-|.++++|..
T Consensus 363 l~~~-~cmk~~~--ah~hfvt~lDfh~~~p~VvTG-sVdqt~KvwEc 405 (406)
T KOG0295|consen 363 LKNL-QCMKTLE--AHEHFVTSLDFHKTAPYVVTG-SVDQTVKVWEC 405 (406)
T ss_pred eccc-eeeeccC--CCcceeEEEecCCCCceEEec-cccceeeeeec
Confidence 9998 4444444 488899999999999999999 99999999964
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=268.38 Aligned_cols=277 Identities=18% Similarity=0.340 Sum_probs=233.6
Q ss_pred CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010296 172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI 251 (513)
Q Consensus 172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~ 251 (513)
-+|+++|.|.+|++|...+|.+..++ ....+.|..+...|+++.||+++. ..|++||+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-------------------qh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-------------------QHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-------------------ecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence 47889999999999999999998876 334567999999999999999884 6799999998
Q ss_pred cc--eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-CeEEEEeCCCcEE
Q 010296 252 QE--HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQ 328 (513)
Q Consensus 252 ~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~ 328 (513)
+. ++.+|.+|...|+++.|..+|+.+++|+.||+++|||++...+.+.+. |..+|+++..+|+ +.|+++..+|.|+
T Consensus 71 ~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 71 NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEE
Confidence 75 588999999999999999999999999999999999999976666555 7899999999996 5889999999999
Q ss_pred EEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296 329 LWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH 405 (513)
Q Consensus 329 iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 405 (513)
+||+...... ........+.++.+.|+|. ++++...|+.++|++-+......+...+..
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~------------------ 211 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF------------------ 211 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe------------------
Confidence 9999987654 3344457899999999997 667778899999999875544444332221
Q ss_pred CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296 406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 485 (513)
..|.+.+..+.+||++++||++|.|.+++||++.+..+.-..+. .|...+..++||.||+||+++
T Consensus 212 -------------~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 212 -------------QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred -------------ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEec
Confidence 66778899999999999999999999999999988622222222 378899999999999999999
Q ss_pred ecCCCcccccccCCCccc
Q 010296 486 VGQEPRLGRWGHLPAARN 503 (513)
Q Consensus 486 ~~~dg~v~~W~~~~~~~~ 503 (513)
+.|+.+++|++..+.+.
T Consensus 277 -ssd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 277 -SSDHTARLWDLSAGKEV 293 (311)
T ss_pred -CCCCceeecccccCcee
Confidence 88899999999887643
No 11
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4e-39 Score=274.54 Aligned_cols=319 Identities=18% Similarity=0.223 Sum_probs=258.4
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
+..|..|+++|++++.+|+.++++|||.|..-.||++.++..... +.+|...|+++.|+.+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fshd 117 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSHD 117 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEccC
Confidence 457889999999999999999999999999999999999986654 4899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID 311 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 311 (513)
|.+||+|..+|.|+||...++.....+......|.-|.|+|-+..|++|+.||.|.+|.+.++...+.+.+|..++++-.
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 99999999999999999999998888876677888999999999999999999999999999888889999999999999
Q ss_pred eeCCC-eEEEEeCCCcEEEEecCCCeeeEEec--CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296 312 CLRKE-RVLTVGRDRSMQLWKVPEESRLVFRA--PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL 387 (513)
Q Consensus 312 ~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (513)
|.|+| +++++..||+|++|++.+++++.... ......++.++..+. ++.|+.++.+++....+++.+.......+.
T Consensus 198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred ccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 99998 56688899999999999998774332 234566777777775 668888999999998888887776631111
Q ss_pred c--------cCCCCc-----------ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296 388 L--------DGLKNF-----------EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL 448 (513)
Q Consensus 388 ~--------~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v 448 (513)
. ..+.+. ..-.+.|.++......+ -+...|...|+.+.|-+ ..+|++++.+|.|+.
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL----RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh----heeccCCCceEEEEEcC-cchheeeccCceEEe
Confidence 1 111111 11112222222211111 12245677799999999 689999999999999
Q ss_pred EEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 449 WAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 449 wd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
||.+++ +....+.. |...|.+++++|+.++++++ +.|++.+++++.
T Consensus 353 wDaRtG-~l~~~y~G--H~~~Il~f~ls~~~~~vvT~-s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTG-QLKFTYTG--HQMGILDFALSPQKRLVVTV-SDDNTALVFEVP 398 (399)
T ss_pred eecccc-ceEEEEec--CchheeEEEEcCCCcEEEEe-cCCCeEEEEecC
Confidence 999999 44444443 89999999999999999999 999999998763
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5e-40 Score=288.86 Aligned_cols=303 Identities=22% Similarity=0.362 Sum_probs=251.3
Q ss_pred chhhhhccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 151 EFRVLLKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 151 ~~~~~~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
.++.+. |..+|.+++|+|-.. .|++|+.|-+.++|++......... ...++ +.. .........+..|++++|+
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lr-h~~-~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLR-HCI-REGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---hhhhh-hhh-hhhcccCCccCCcceEEec
Confidence 344555 999999999999766 8899999999999999751110000 00000 000 0000112335679999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT 309 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 309 (513)
.+|..||+|+.+|.+++|+. .|..+.+|..|.++|.++.|+..|.||++++.|+++.+||..++.....+.-|..+...
T Consensus 245 ~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 99999999999999999995 57888999999999999999999999999999999999999999999999889888889
Q ss_pred EEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296 310 IDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL 387 (513)
Q Consensus 310 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (513)
+.|-.+..|++++.|+.|+++.+....+. ++.+|...|.++.|.|.+. |++++.|++++||..........+.
T Consensus 324 VdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~----- 398 (524)
T KOG0273|consen 324 VDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ----- 398 (524)
T ss_pred eEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-----
Confidence 99999999999999999999999877665 7888999999999999997 6799999999999988877766663
Q ss_pred ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC---------CEEEEecCCCcEEEEEeCCCCcce
Q 010296 388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS---------DLAASGAGNGSVRLWAIESETKDI 458 (513)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~g~~dg~v~vwd~~~~~~~~ 458 (513)
.|...|..+.|+|.| ..|++++.|++|++||+..+ .++
T Consensus 399 --------------------------------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i 445 (524)
T KOG0273|consen 399 --------------------------------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPI 445 (524)
T ss_pred --------------------------------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-cee
Confidence 344448999999865 47999999999999999998 455
Q ss_pred eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 459 QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 459 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
..+. .|..+|.+|+|||+|+|||+| +.||.|.+|+...++
T Consensus 446 ~~f~--kH~~pVysvafS~~g~ylAsG-s~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 446 HTLM--KHQEPVYSVAFSPNGRYLASG-SLDGCVHIWSTKTGK 485 (524)
T ss_pred Eeec--cCCCceEEEEecCCCcEEEec-CCCCeeEeccccchh
Confidence 5443 399999999999999999999 999999999887664
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9e-40 Score=268.79 Aligned_cols=275 Identities=26% Similarity=0.413 Sum_probs=233.1
Q ss_pred hcCceeEEeecccc--CCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCC
Q 010296 131 ESGRVRRVIASRVQ--KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHG 208 (513)
Q Consensus 131 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (513)
...+....+.+.+- +.....+++.+.||...|..+..+++|++.++++.|+++++||+.+++..+.|
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f----------- 101 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF----------- 101 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-----------
Confidence 33444555555553 34556678899999999999999999999999999999999999999766644
Q ss_pred CCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecC--CCeEEEEeCCCc
Q 010296 209 AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQG--TSELFSGSFDRT 285 (513)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~ 285 (513)
.+|...|.+++|+|+.+.+++|+.|.+|++|++........... +...|+|+.|+|+ ..+|++++.|++
T Consensus 102 --------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 102 --------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred --------EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 79999999999999999999999999999999875444333332 3789999999998 678999999999
Q ss_pred EEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCC
Q 010296 286 VKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDD 364 (513)
Q Consensus 286 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d 364 (513)
|++||+++.+....+.+|.+.++.+.++|||.++ +|+.||.+.+||++.++.+....+...|.+++|+|+...++...+
T Consensus 174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred EEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC
Confidence 9999999999999999999999999999999766 888999999999999999999999999999999999987777777
Q ss_pred CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296 365 GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG 444 (513)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg 444 (513)
..|+|||+.++..+..+....... ..........+++|+++|..|++|-.|+
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~----------------------------s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGP----------------------------SSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred CceEEEeccchhhhhhcccccccc----------------------------ccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 789999999999888776432210 0012223378899999999999999999
Q ss_pred cEEEEEeC
Q 010296 445 SVRLWAIE 452 (513)
Q Consensus 445 ~v~vwd~~ 452 (513)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999875
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-38 Score=283.77 Aligned_cols=306 Identities=17% Similarity=0.271 Sum_probs=251.5
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (513)
..-++.+.-.++..|..-|+|+.|+|||.+++|++.||+|.+||=.+++.+..+. ...+|.+.|
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~----------------~~~aHkGsI 238 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE----------------DSDAHKGSI 238 (603)
T ss_pred eeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec----------------CCCCccccE
Confidence 3345556667788899999999999999999999999999999999999887661 135899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee-------------------------------------------ccC
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-------------------------------------------FPG 260 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------------~~~ 260 (513)
++|+|+||+..|++++.|.+++|||+.+.+++.+ +.+
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence 9999999999999999999999999877654433 358
Q ss_pred cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-
Q 010296 261 HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL- 338 (513)
Q Consensus 261 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~- 338 (513)
|...|+++..+|++++|++|+.||.|.-|+..++..-... .+|...|.+++.+..+.+++++.|.++++.++......
T Consensus 319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence 9999999999999999999999999999999988765443 67999999999998899999999999999976422100
Q ss_pred -------------------------------EEe--------cCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee
Q 010296 339 -------------------------------VFR--------APASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV 378 (513)
Q Consensus 339 -------------------------------~~~--------~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~ 378 (513)
.+. .......+++++|++. +++|+.||.|+||.+......
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 000 1123455778888886 678999999999998876543
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI 458 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~ 458 (513)
..... ..|..+|+++++||++.+||+|...+.|.+||+.+...
T Consensus 479 ee~~~-----------------------------------~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-- 521 (603)
T KOG0318|consen 479 EEAKL-----------------------------------LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-- 521 (603)
T ss_pred ceeee-----------------------------------ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--
Confidence 33221 44556699999999999999999999999999998743
Q ss_pred eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296 459 QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN 503 (513)
Q Consensus 459 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~ 503 (513)
..-...-|...|++|+|+|+..++|+| +-|-.|.||++.+..+.
T Consensus 522 ~~~~w~FHtakI~~~aWsP~n~~vATG-SlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 522 KTNRWAFHTAKINCVAWSPNNKLVATG-SLDTNVIIYSVKKPAKH 565 (603)
T ss_pred ecceeeeeeeeEEEEEeCCCceEEEec-cccceEEEEEccChhhh
Confidence 333333389999999999999999999 99999999999887765
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=260.58 Aligned_cols=290 Identities=21% Similarity=0.318 Sum_probs=236.5
Q ss_pred cchhhhhccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 150 DEFRVLLKHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
..++.+.+|++.|..++|+|- |..|||||.|+.|+||+...+...... . ..-.+|...|.+++|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck----~-----------vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK----T-----------VLDDGHKRSVRSVAW 69 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEE----E-----------eccccchheeeeeee
Confidence 346778899999999999998 889999999999999999853221110 0 013479999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCc--ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC---CceeEEeecc
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQ--EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED---RAYISTLFGH 303 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~ 303 (513)
+|.|++|++++.|.++.||.-..+ +++.++.+|...|.|++|+++|.+||+|+.|..|.||.+.. ..++..+..|
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 999999999999999999986544 67899999999999999999999999999999999999874 3568889999
Q ss_pred cCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCe
Q 010296 304 QSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 304 ~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~ 377 (513)
...|..+.|+|. +.|++++.|++|++|.-.... ...+.+|...|.+++|.+.| +|++++.|++++||.+.+.
T Consensus 150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-- 227 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-- 227 (312)
T ss_pred cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--
Confidence 999999999995 567799999999999876322 34677888899999999988 6999999999999986522
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC--C
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE--T 455 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~--~ 455 (513)
+. ..|...+..++|. ...|++++.|+.|+||.-... .
T Consensus 228 ---~~------------------------------------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~ 266 (312)
T KOG0645|consen 228 ---LS------------------------------------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE 266 (312)
T ss_pred ---cc------------------------------------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC
Confidence 11 3444559999998 448999999999999987653 1
Q ss_pred cceeeee--ecCcccEEEEEEeecC-CCEEEEEecCCCcccccccC
Q 010296 456 KDIQPLY--NLPLVGFVNSLAFAKS-GQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 456 ~~~~~~~--~~~~~~~v~~v~~sp~-~~~l~~~~~~dg~v~~W~~~ 498 (513)
..+..+. ...|...|++|+|.|. ...|+++ |+||.|++|.+.
T Consensus 267 p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~-~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 267 PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG-GDDGIVNFWELE 311 (312)
T ss_pred chHHHHHhhhcccccccceEEEcCCCCCceeec-CCCceEEEEEec
Confidence 1222221 2236778999999996 4566666 999999999764
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.9e-40 Score=291.46 Aligned_cols=294 Identities=17% Similarity=0.307 Sum_probs=247.2
Q ss_pred cccchhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCC-CccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296 148 ATDEFRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSS-GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA 225 (513)
Q Consensus 148 ~~~~~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (513)
+...++++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. +.++++ +.+|..+|..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vrd 263 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVRD 263 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhhh
Confidence 3456778999999999999999 889999999999999999987 666664 4799999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeeccc
Q 010296 226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQ 304 (513)
Q Consensus 226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 304 (513)
++|+++|..|++++.|+.|++||+++|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 9999999999999999999999999999999987 45678999999998 778899999999999999999999999999
Q ss_pred CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE
Q 010296 305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVF--RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
+.|..+.|.+++ ++++.+.+++++||+.+....+.+ ........|+..+|++. +++-+.|+.|.||.+...-.+..
T Consensus 343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence 999999999987 788999999999999988776633 34445677899999987 66778999999998654322211
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP 460 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~ 460 (513)
-+. +......++-..+.|||||.+|++|+.||.+.+||.++- +.+..
T Consensus 423 kK~--------------------------------feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~ 469 (503)
T KOG0282|consen 423 KKR--------------------------------FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSK 469 (503)
T ss_pred hhh--------------------------------hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhc
Confidence 110 001223345788999999999999999999999999886 45555
Q ss_pred eeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
+.. |.+++..+.|+|...--++++|.+|.|++|+
T Consensus 470 lka--h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKA--HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccc--CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 554 7899999999998876665669999999996
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=263.30 Aligned_cols=252 Identities=23% Similarity=0.374 Sum_probs=229.3
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR- 294 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~- 294 (513)
+.+|...|+++.|+++.++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++++|+.|+...||++.+.
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d 130 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD 130 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc
Confidence 4699999999999999999999999999999999999888888888999999999999999999999999999999865
Q ss_pred -----ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec-CC-eEEEEeCCCC
Q 010296 295 -----AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS-ND-EFLSGSDDGS 366 (513)
Q Consensus 295 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~-~~-~~~~~~~dg~ 366 (513)
+..+.+.+|.+.+.++.|.+++.+++++.|.++.+||+.+++.. .+.+|...|.++.++| ++ .|++|+-|+.
T Consensus 131 ~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 131 AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc
Confidence 34567889999999999999999999999999999999998876 7889999999999999 55 4999999999
Q ss_pred EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296 367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV 446 (513)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v 446 (513)
.+|||++.+.+.++|..+ ..-|++++|.|+|.-|++|+.|++.
T Consensus 211 aklWD~R~~~c~qtF~gh-------------------------------------esDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEGH-------------------------------------ESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred eeeeeccCcceeEeeccc-------------------------------------ccccceEEEccCCCeeeecCCCcee
Confidence 999999999999998544 3449999999999999999999999
Q ss_pred EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296 447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL 506 (513)
Q Consensus 447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~ 506 (513)
|+||++.. +.+..+.......+|++|+||..|++|++| ..|.++.+||..++++.+++
T Consensus 254 RlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 254 RLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred EEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEee-ecCCceeEeeccccceEEEe
Confidence 99999998 555555554557889999999999999999 89999999999999887776
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8e-39 Score=265.87 Aligned_cols=289 Identities=19% Similarity=0.289 Sum_probs=241.2
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
.++..+.+|.+.|+.+.|+|+|.+|||||.|..|.+|++....... ..+.+|.++|..+.|.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM 99 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence 4556788999999999999999999999999999999975433221 1346999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
++++.|++++.|.+|+.||+++|+.++.+++|..-|+++.-+.-|.. +.+++.|+++++||+++...++++. ...+++
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 99999999999999999999999999999999999999996555554 5588999999999999988888775 567899
Q ss_pred EEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe----eEEe
Q 010296 309 TIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP----VYIV 381 (513)
Q Consensus 309 ~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~----~~~~ 381 (513)
++.|...+ .+++++-|+.|++||++.+... ...+|...|+.+..++.|. +++-+.|.++++||++...+ +..+
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred EEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence 99998865 7889999999999999877655 7889999999999999996 67999999999999986543 3333
Q ss_pred ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL 461 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~ 461 (513)
..+. .........++|+|+++.+.+|+.|..+++||.... .. .+
T Consensus 259 ~g~~---------------------------------hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~--ly 302 (338)
T KOG0265|consen 259 QGHI---------------------------------HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR-RI--LY 302 (338)
T ss_pred ecch---------------------------------hhhhhhcceeeccCCCCccccccccceEEEeecccc-cE--EE
Confidence 3211 111122667899999999999999999999999875 22 22
Q ss_pred eecCcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296 462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGR 494 (513)
Q Consensus 462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~ 494 (513)
....|.+.|++++|+|...+|.++ +.|.+|.+
T Consensus 303 klpGh~gsvn~~~Fhp~e~iils~-~sdk~i~l 334 (338)
T KOG0265|consen 303 KLPGHYGSVNEVDFHPTEPIILSC-SSDKTIYL 334 (338)
T ss_pred EcCCcceeEEEeeecCCCcEEEEe-ccCceeEe
Confidence 223489999999999999999999 88888765
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-38 Score=277.97 Aligned_cols=277 Identities=19% Similarity=0.329 Sum_probs=244.0
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
+..|++++|+.+|.+||+|+.||.++||+..... +. .+..|.++|.++.|+..|+||+++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~-------------------tl~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS-------------------TLGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh-hh-------------------hhhccCCceEEEEEcCCCCEEEec
Confidence 3679999999999999999999999999977543 33 247899999999999999999999
Q ss_pred eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE
Q 010296 239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV 318 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 318 (513)
+.|+++.+||..++...+.+.-|..+-..+.|-.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|.|.+.|
T Consensus 295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L 373 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL 373 (524)
T ss_pred cCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCce
Confidence 99999999999999999999999988788899754 56899999999999999999999999999999999999998866
Q ss_pred E-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC----------eEEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296 319 L-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND----------EFLSGSDDGSIELWSLLRKKPVYIVKNAHP 386 (513)
Q Consensus 319 ~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~----------~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 386 (513)
+ +++.|++++||++...... .+..|...|..+.|+|.| .+++++.|++|++||+..+.++..+
T Consensus 374 LaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----- 448 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----- 448 (524)
T ss_pred EEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-----
Confidence 5 8999999999998665544 678888899999999854 2789999999999999999999998
Q ss_pred cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCc
Q 010296 387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~ 466 (513)
..|..+|.+++|+|+|+++|+|+.||.|.+|+++++ +.+..+..
T Consensus 449 --------------------------------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~ 492 (524)
T KOG0273|consen 449 --------------------------------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQG 492 (524)
T ss_pred --------------------------------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----heeEeecC
Confidence 445556999999999999999999999999999988 44555556
Q ss_pred ccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
.+.|..|+|+.+|.+|.++ -.|+.+++-|+.
T Consensus 493 ~~~Ifel~Wn~~G~kl~~~-~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 TGGIFELCWNAAGDKLGAC-ASDGSVCVLDLR 523 (524)
T ss_pred CCeEEEEEEcCCCCEEEEE-ecCCCceEEEec
Confidence 7889999999999988888 778888876653
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4e-40 Score=284.40 Aligned_cols=281 Identities=21% Similarity=0.340 Sum_probs=242.0
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
..+|..|.|.|+|+.|+||+..|.+.+|+..+-.... ....|..+|.++.|++++.++++|
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt-------------------ilQaHDs~Vr~m~ws~~g~wmiSg 156 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET-------------------ILQAHDSPVRTMKWSHNGTWMISG 156 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHH-------------------HhhhhcccceeEEEccCCCEEEEc
Confidence 4589999999999999999999999999985433222 246899999999999999999999
Q ss_pred eCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-C
Q 010296 239 GLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-E 316 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~ 316 (513)
+.+|.|++|+..-.. +..+.+ |...|.+++|+|+...+++|+.||+|+|||....+.-..+.+|.-.|.+++|+|. +
T Consensus 157 D~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg 235 (464)
T KOG0284|consen 157 DKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG 235 (464)
T ss_pred CCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc
Confidence 999999999976544 444444 5599999999999999999999999999999999888889999999999999995 6
Q ss_pred eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296 317 RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF 394 (513)
Q Consensus 317 ~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.+++++.|..|++||.+++.++ .+..|...|..+.|++++. |++++.|..+++||+++.+.++++..
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~----------- 304 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG----------- 304 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-----------
Confidence 7779999999999999999887 6778899999999999986 78999999999999998888877754
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSL 473 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v 473 (513)
|...|+++.|+| ...+|.+|+.||.|..|.+... .++.. ....|.+.|+++
T Consensus 305 --------------------------Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~-i~~AHd~~iwsl 356 (464)
T KOG0284|consen 305 --------------------------HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE-IPPAHDGEIWSL 356 (464)
T ss_pred --------------------------chhhheeeccccccccceeeccCCCceEEEecccc-ccccC-CCcccccceeee
Confidence 334499999999 4568999999999999999843 22222 223488999999
Q ss_pred EeecCCCEEEEEecCCCcccccccCC
Q 010296 474 AFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 474 ~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
+|+|-|..|++| +.|.++++|....
T Consensus 357 ~~hPlGhil~tg-snd~t~rfw~r~r 381 (464)
T KOG0284|consen 357 AYHPLGHILATG-SNDRTVRFWTRNR 381 (464)
T ss_pred eccccceeEeec-CCCcceeeeccCC
Confidence 999999999998 9999999997543
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-38 Score=298.15 Aligned_cols=299 Identities=22% Similarity=0.346 Sum_probs=244.5
Q ss_pred ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChh-------------hhccCCCCCCCCC
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEE-------------VLKSHGAKDPQGR 215 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 215 (513)
..++.++..-...++|..|++++.+||.|..|..|++|.+...+... +..... .............
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-LKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc-ccchhhhccccccccchhhhhccccCCceeEE
Confidence 34455555556789999999999999999999999999998543211 110000 0000111222334
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
+.+|.++|+.+.|+|+.++|++|+.|++|++|.+.+..++..+++|..+|+.+.|+|.|-|++|++.|++.++|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296 296 YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~ 372 (513)
+++.+.+|.+.|.|+.|+|+. ++++|+.|.+|++||+.++..+ .+.+|..+|.+++|+|+|+ |++|+.||.|.|||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 999999999999999999987 5558999999999999988776 7889999999999999997 779999999999999
Q ss_pred CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
.+++++..+..+ .+.|.++.||.+|..||+|+.|++|++||+.
T Consensus 607 ~~~~~v~~l~~H-------------------------------------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 607 ANGSLVKQLKGH-------------------------------------TGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCcchhhhhcc-------------------------------------cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 999998887543 4449999999999999999999999999986
Q ss_pred CCCcce-------e-------------eeeec-CcccEEEEEEeecCCCEEEEE
Q 010296 453 SETKDI-------Q-------------PLYNL-PLVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 453 ~~~~~~-------~-------------~~~~~-~~~~~v~~v~~sp~~~~l~~~ 485 (513)
...... . .+..+ ....+|.+|.|...+..|++|
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 650 KVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred hhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 542220 0 01111 134578888888776555554
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-36 Score=280.68 Aligned_cols=285 Identities=29% Similarity=0.488 Sum_probs=246.7
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
++.+.+|.++|++++|+|++++|++++.+|.|++|++.++..... ...|...+..+.|+|+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 356789999999999999999999999999999999988765443 2567788999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID 311 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 311 (513)
+++|++++.+|.|++|++.+++.+..+..|...|.++.|++++.++++++.++.|.+|++.+++.+..+..|...+.++.
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999999999888888888999999999999988888888899999999998888888888999999999
Q ss_pred eeCCCeEEEEeC-CCcEEEEecCCCeee-EEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296 312 CLRKERVLTVGR-DRSMQLWKVPEESRL-VFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLL 388 (513)
Q Consensus 312 ~~~~~~~~~~~~-d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 388 (513)
|+|++.+++++. ++.|++||+...... .+..+...+.++.|+|++ .+++++.++.|++||+..++++..+..
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----- 217 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG----- 217 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----
Confidence 999887776555 999999999876654 555677789999999998 588888899999999998777666532
Q ss_pred cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296 389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
+...+.+++|+|++.++++++.+|.|++|++.++ .....+. .|..
T Consensus 218 --------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~--~~~~ 262 (289)
T cd00200 218 --------------------------------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLS--GHTN 262 (289)
T ss_pred --------------------------------cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEcc--ccCC
Confidence 2234999999999999999988999999999876 3344444 3678
Q ss_pred EEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 469 FVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.|.+++|+|++++|+++ +.||.|++|+
T Consensus 263 ~i~~~~~~~~~~~l~~~-~~d~~i~iw~ 289 (289)
T cd00200 263 SVTSLAWSPDGKRLASG-SADGTIRIWD 289 (289)
T ss_pred cEEEEEECCCCCEEEEe-cCCCeEEecC
Confidence 89999999999999999 8999999995
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=251.14 Aligned_cols=276 Identities=16% Similarity=0.353 Sum_probs=230.6
Q ss_pred ccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc
Q 010296 141 SRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS 220 (513)
Q Consensus 141 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (513)
-++|......+.++++...+.|+.+.+.|++++||+++. ..|++||+.++... |...+.+|.
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----------------Pv~t~e~h~ 83 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----------------PVATFEGHT 83 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----------------ceeEEeccC
Confidence 467899999999999988999999999999999999986 67999999987642 334568999
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296 221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
..|+++.|..+|+++++|+.||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+...+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 999999999999999999999999999999976666666 8899999999999999999999999999999998776655
Q ss_pred ec-ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-------EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296 301 FG-HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-------VFRAPASSLECCCFISNDE-FLSGSDDGSIELW 370 (513)
Q Consensus 301 ~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw 370 (513)
.. ....|.++...|+|..+ ++...|++++|++...... .+..|...+..+.++|+++ |++++.|.+++||
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 43 44578999999999666 5667899999999764322 5778899999999999997 7899999999999
Q ss_pred ecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296 371 SLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449 (513)
Q Consensus 371 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw 449 (513)
+..+. +.-..+ .+|..|+..++||.+|.||+||+.|+.+++|
T Consensus 243 n~~~~~kle~~l-------------------------------------~gh~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 243 NTDDFFKLELVL-------------------------------------TGHQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred ecCCceeeEEEe-------------------------------------ecCCceEEeeeeccCccEEEecCCCCceeec
Confidence 99887 222222 5677889999999999999999999999999
Q ss_pred EeCCCCcceeeeeecCcccEEEEEEe
Q 010296 450 AIESETKDIQPLYNLPLVGFVNSLAF 475 (513)
Q Consensus 450 d~~~~~~~~~~~~~~~~~~~v~~v~~ 475 (513)
++..+ +.+..... |.....|++.
T Consensus 286 ~~~~~-k~v~qy~g--h~K~~vc~~l 308 (311)
T KOG0315|consen 286 DLSAG-KEVRQYQG--HHKAAVCVAL 308 (311)
T ss_pred ccccC-ceeeecCC--cccccEEEEe
Confidence 99988 33333322 4444455544
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-38 Score=272.37 Aligned_cols=299 Identities=20% Similarity=0.298 Sum_probs=247.0
Q ss_pred CcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296 147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL 226 (513)
Q Consensus 147 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 226 (513)
.+.+..+++..|+..|.-+.||++|+|||+++.|.+..||.+.....+.. ..++.+|..+|..+
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~yi 275 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSYI 275 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEEE
Confidence 45567788999999999999999999999999999999999876554221 12457899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc-c
Q 010296 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH-Q 304 (513)
Q Consensus 227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~ 304 (513)
.||||.++|++|+.+..+.+||+.+|.....+.. |...+.+++|.|||..+++|+.|++|..||+... .+....+. .
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~ 354 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRD 354 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhccccccc
Confidence 9999999999999999999999999998877763 4578999999999999999999999999999654 34344333 2
Q ss_pred CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCeeEEee
Q 010296 305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYIVK 382 (513)
Q Consensus 305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~~~~~~ 382 (513)
..|.+++..+|| .+++.+.|..|++|+..+...........++++++.+.+++++ +.-.+..|++||+...+.+..+.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 468999999998 5568889999999999877666666777899999999999855 77789999999999777666655
Q ss_pred cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPL 461 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~ 461 (513)
++.. ...|..-||-. +..++++||.|+.|+||+..++ +++..+
T Consensus 435 Ghkq-----------------------------------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~L 478 (519)
T KOG0293|consen 435 GHKQ-----------------------------------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVL 478 (519)
T ss_pred cccc-----------------------------------cceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEee
Confidence 4321 22255556654 4479999999999999999998 666666
Q ss_pred eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
.+ |...|+||+|+|..+.+++++|+||+|+||...+.
T Consensus 479 sG--Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 479 SG--HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cC--CcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 65 88999999999999877777699999999987654
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-37 Score=247.28 Aligned_cols=287 Identities=21% Similarity=0.308 Sum_probs=243.8
Q ss_pred ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
.+.++.+..|.++|.++.|+-+|+|.+||+.|.+|++|+...+.+++++ .+|...|..++.
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-------------------sghG~EVlD~~~ 67 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-------------------SGHGHEVLDAAL 67 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-------------------cCCCceeeeccc
Confidence 4567788899999999999999999999999999999999999988865 789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC--ceeEEeecccCC
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR--AYISTLFGHQSE 306 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~ 306 (513)
+.|+..|++|+.|..|.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. ++++.+......
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999864 568888888888
Q ss_pred eEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296 307 VLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH 385 (513)
Q Consensus 307 v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (513)
|.++... ...+++++.||+++.||++.+... ......+|++++|++++. .++++-++++++.|-.+|+.+...+.+.
T Consensus 148 V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 148 VSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred eeEEEec-ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence 9998875 456889999999999999988754 233456899999999997 6789999999999999999988876543
Q ss_pred CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC
Q 010296 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~ 465 (513)
. ..+-...+++.....+++|++||.|++||+... ..+..+..
T Consensus 226 n-----------------------------------~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~-- 267 (307)
T KOG0316|consen 226 N-----------------------------------MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSV-- 267 (307)
T ss_pred c-----------------------------------ceeeeeeeecccceeEEeccCCceEEEEEeccc-eeeeeecc--
Confidence 2 122456677777789999999999999999887 22222221
Q ss_pred cccE-EEEEEeecCCCEEEEEecCCCcccccc
Q 010296 466 LVGF-VNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 466 ~~~~-v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
+... |++++++|.-..+++++ ++.+.+|-
T Consensus 268 ~~~v~v~dl~~hp~~~~f~~A~--~~~~~~~~ 297 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPTMDDFITAT--GHGDLFWY 297 (307)
T ss_pred CCceeEEeeecccCccceeEec--CCceecee
Confidence 3444 79999999988888773 34566773
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=282.49 Aligned_cols=298 Identities=18% Similarity=0.300 Sum_probs=249.6
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCC-ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKD-GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
...+....++.+.--..+|..++|+..|.+||.|+.. |.+.||++++..-+.. ..+|...
T Consensus 292 yelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-------------------QQgH~~~ 352 (893)
T KOG0291|consen 292 YELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-------------------QQGHSDR 352 (893)
T ss_pred EecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------------------ccccccc
Confidence 4445556667776677899999999999999988754 8999999998765543 3689999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
+++++++|||.++|+|+.||.|+|||..++-|+.+|..|+..|+.++|+..++.|++.+.||+|+.||+...+..+++..
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888864
Q ss_pred c-cCCeEEEEeeCCCeEEEEe-CC-CcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC-C
Q 010296 303 H-QSEVLTIDCLRKERVLTVG-RD-RSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK-K 376 (513)
Q Consensus 303 ~-~~~v~~~~~~~~~~~~~~~-~d-~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~-~ 376 (513)
. +....|++..|.|.+++++ .| =.|++|++.+++.+ .+.+|.++|.+++|+|.+. |+++++|.+|++||+-.. .
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 3 3356788888889888555 44 35999999999988 7889999999999999986 889999999999998654 3
Q ss_pred eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK 456 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~ 456 (513)
.+.++...+. +..++|+|+|+-|++++-||.|.+||+....+
T Consensus 513 ~vEtl~i~sd--------------------------------------vl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 513 TVETLEIRSD--------------------------------------VLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred eeeeEeeccc--------------------------------------eeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 3444443332 99999999999999999999999999976521
Q ss_pred ceeee------------------eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 457 DIQPL------------------YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 457 ~~~~~------------------~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
. ..+ .......+.+.+++|+||.+|++| |....|++|++..+
T Consensus 555 ~-~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg-G~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 555 V-GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG-GESNSICIYDVPEG 614 (893)
T ss_pred e-ccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec-CCcccEEEEECchh
Confidence 1 000 000123578999999999999999 99999999987655
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-36 Score=290.26 Aligned_cols=289 Identities=26% Similarity=0.404 Sum_probs=247.1
Q ss_pred hhhhc-cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc--cccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 153 RVLLK-HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK--GVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 153 ~~~~~-h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
..+.+ |...|+|+.|+|+|++|++++.++.+++|+..+.. ... .+.+|...|..++|+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs 212 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFS 212 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEEC
Confidence 34434 48899999999999999999999999999996665 222 236899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC-CCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 230 SDGRYLASGGLDRHIHLWDT-RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
|++.++++++.|++|+|||+ ..+..++++.+|...|++++|+|.++++++|+.|++|+|||+++++++..+.+|...|.
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 99999999999999999999 55688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEE-EEeCCCcEEEEecCCCee--e-EEecCCC--CeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296 309 TIDCLRKERVL-TVGRDRSMQLWKVPEESR--L-VFRAPAS--SLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 309 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~--~-~~~~~~~--~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
+++|++++.++ +++.|+.|++||+.++.. . ....+.. .+.++.|+|++. +++++.|+.+++|++..+..+..+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999988555 778899999999999883 2 3333333 589999999996 778999999999999999988887
Q ss_pred ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL 461 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~ 461 (513)
..+... ...+.+..+++.+.++++|+.|+.|++|++.++ ..++.+
T Consensus 373 ~~~~~~----------------------------------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l 417 (456)
T KOG0266|consen 373 TGHSNL----------------------------------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRL 417 (456)
T ss_pred cccCCc----------------------------------ceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhh
Confidence 654321 012566667889999999999999999999986 444444
Q ss_pred eecCc-ccEEEEEEeecCCCEEEEEec--CCCcccccccC
Q 010296 462 YNLPL-VGFVNSLAFAKSGQFLIAGVG--QEPRLGRWGHL 498 (513)
Q Consensus 462 ~~~~~-~~~v~~v~~sp~~~~l~~~~~--~dg~v~~W~~~ 498 (513)
.. | ...+..+.|+|...+++++ + .|+.+++|...
T Consensus 418 ~~--h~~~~~~~~~~~~~~~~~~s~-s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EG--HSKAAVSDLSSHPTENLIASS-SFEGDGLIRLWKYD 454 (456)
T ss_pred cC--CCCCceeccccCCCcCeeeec-CcCCCceEEEecCC
Confidence 44 5 7889999999999999988 5 78999999653
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.6e-37 Score=286.85 Aligned_cols=243 Identities=23% Similarity=0.446 Sum_probs=217.2
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-------------------------------eeeeccCcCCCeEEE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-------------------------------HIQAFPGHRGPVSCL 268 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-------------------------------~~~~~~~~~~~v~~~ 268 (513)
...++|..|++++.+||.|..|..|++|.+...+ ...++.+|.++|...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4569999999999999999999999999976311 123467899999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCC
Q 010296 269 TFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASS 346 (513)
Q Consensus 269 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~ 346 (513)
.|+|+.++|++++.|++|++|.+.+..++..+.+|..+|+.+.|+|.| +|++++.|++.++|........ .+.+|.+.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD 537 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD 537 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence 999999999999999999999999999999999999999999999988 5669999999999999876665 78899999
Q ss_pred eeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296 347 LECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV 425 (513)
Q Consensus 347 v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 425 (513)
|.|+.|+|+.. +++|+.|.+|++||+.+|..++.+. +|.++|
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-------------------------------------GH~~~V 580 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-------------------------------------GHKGPV 580 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-------------------------------------CCCCce
Confidence 99999999986 7799999999999999999999884 455669
Q ss_pred EEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296 426 SSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN 503 (513)
Q Consensus 426 ~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~ 503 (513)
++++|||+|++|++|+.||.|.|||+.++ ..+..+.. |.+.|.++.||.+|..||++ |.|.+|++||+......
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~--Ht~ti~SlsFS~dg~vLasg-g~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKG--HTGTIYSLSFSRDGNVLASG-GADNSVRLWDLTKVIEL 654 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhc--ccCceeEEEEecCCCEEEec-CCCCeEEEEEchhhccc
Confidence 99999999999999999999999999998 45555555 79999999999999999999 99999999998766544
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.4e-35 Score=303.63 Aligned_cols=292 Identities=15% Similarity=0.194 Sum_probs=232.8
Q ss_pred hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCC
Q 010296 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGR 233 (513)
Q Consensus 155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 233 (513)
+..|.+.|++++|+|++++||+|+.|++|+||++......... ...+... ..+...|.+++|+| .+.
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~-----------~~~~~~~-~~~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD-----------IHYPVVE-LASRSKLSGICWNSYIKS 546 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc-----------cccceEE-ecccCceeeEEeccCCCC
Confidence 4458999999999999999999999999999998642110000 0000001 12345799999987 478
Q ss_pred EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC 312 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 312 (513)
+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+.. ...+.++.|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~ 625 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQF 625 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEE
Confidence 999999999999999999999999999999999999997 788999999999999999999988888774 467899999
Q ss_pred eC-CC-eEEEEeCCCcEEEEecCCCee--eEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC------CeeEEee
Q 010296 313 LR-KE-RVLTVGRDRSMQLWKVPEESR--LVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK------KPVYIVK 382 (513)
Q Consensus 313 ~~-~~-~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~------~~~~~~~ 382 (513)
++ ++ .+++++.|+.|++||++.... ..+..|...|.++.|.+...+++++.|++|+|||+..+ +++..+
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~- 704 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF- 704 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-
Confidence 65 45 566899999999999987642 35678888999999987677999999999999998753 233333
Q ss_pred cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee--
Q 010296 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP-- 460 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~-- 460 (513)
.+|...+.+++|+|++.+|++|+.||.|++|+..........
T Consensus 705 ------------------------------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 705 ------------------------------------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred ------------------------------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 334455899999999999999999999999998654211100
Q ss_pred --------eeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 461 --------LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 461 --------~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
+....+...|.+++|+|++.+|+++ +.+|.|++|++
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~-~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA-NSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEe-cCCCcEEEEec
Confidence 0111245679999999999999999 88999999986
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-35 Score=262.52 Aligned_cols=332 Identities=17% Similarity=0.230 Sum_probs=225.5
Q ss_pred cccchhhhhccCCCeEEEEECCCCCe-EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296 148 ATDEFRVLLKHRQSVTAVALSEDDSK-GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL 226 (513)
Q Consensus 148 ~~~~~~~~~~h~~~V~~~~~s~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 226 (513)
.....-.+.||...|++++|-|...+ ++||+.|++|.+|+=.-.+... ....|..-|.|+
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~-------------------s~r~HskFV~~V 196 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKS-------------------SFREHSKFVNCV 196 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeee-------------------cccccccceeeE
Confidence 34556678899999999999998764 7899999999999854333322 357789999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc---CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP---GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH 303 (513)
Q Consensus 227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 303 (513)
.|+|||.+|++.+.||+|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+.+++.++...
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 999999999999999999999999999999987 79999999999999999999999999999999888776665422
Q ss_pred c---CCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCee
Q 010296 304 Q---SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPV 378 (513)
Q Consensus 304 ~---~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~ 378 (513)
. .....+.|. .+.|++.+.+|+|.+++....... .+.+|...|+++..++++ .|++|+.||.|.-|+..++..-
T Consensus 277 ~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 1 122233333 445555555555555555544432 455555555555555554 5555555555555555443211
Q ss_pred -----------EEeecCC-C------------------------------cccCCCCcccCcCccccccCCCCC-CC-CC
Q 010296 379 -----------YIVKNAH-P------------------------------LLDGLKNFEQDEGKISNGHSENGN-LN-PG 414 (513)
Q Consensus 379 -----------~~~~~~~-~------------------------------~~~~~~~~~~~~~~i~~~~~~~~~-~~-~~ 414 (513)
..+.... . .++.......++....+.....-. +. ..
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 1111100 0 000000000010000000000000 00 00
Q ss_pred CcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296 415 SYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGR 494 (513)
Q Consensus 415 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~ 494 (513)
............+++++|++..++.|+.||.|+||.+.... .........|.++|++|++|||+.|||++ ...+.|-+
T Consensus 436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~-l~ee~~~~~h~a~iT~vaySpd~~yla~~-Da~rkvv~ 513 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE-LKEEAKLLEHRAAITDVAYSPDGAYLAAG-DASRKVVL 513 (603)
T ss_pred cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc-ccceeeeecccCCceEEEECCCCcEEEEe-ccCCcEEE
Confidence 00001122337899999999999999999999999998863 23334455699999999999999999999 88999999
Q ss_pred cccCCCc
Q 010296 495 WGHLPAA 501 (513)
Q Consensus 495 W~~~~~~ 501 (513)
|++....
T Consensus 514 yd~~s~~ 520 (603)
T KOG0318|consen 514 YDVASRE 520 (603)
T ss_pred EEcccCc
Confidence 9987654
No 31
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-37 Score=249.98 Aligned_cols=290 Identities=17% Similarity=0.287 Sum_probs=257.0
Q ss_pred hhhccCCCeEEEEECC---CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296 154 VLLKHRQSVTAVALSE---DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 230 (513)
+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+-++ .+|.+.|++..+..
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-------------------eghkgavw~~~l~~ 69 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-------------------EGHKGAVWSATLNK 69 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-------------------eccCcceeeeecCc
Confidence 4568999999999986 7889999999999888888887766644 89999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEE
Q 010296 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLT 309 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~ 309 (513)
+....|+++.|-+.+|||.-+|..+..|. |..-|.+++|+.+.++|++|+.+..++|||++..+ +...+.+|.+.|..
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRT 148 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCccee
Confidence 98899999999999999999999999987 99999999999999999999999999999998754 46678899999999
Q ss_pred EEeeC-CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296 310 IDCLR-KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLL 388 (513)
Q Consensus 310 ~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 388 (513)
+.|.. +..+++.+.|++|++||.+++..+.......+|.++.++++|.+++....+.|.+||..+..++..++....
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n-- 226 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN-- 226 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc--
Confidence 99976 557888899999999999999999888888999999999999999999999999999999988887764332
Q ss_pred cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296 389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
|.+..++|+..++++|+.|..++.||..++.. +... ...|.+
T Consensus 227 ------------------------------------V~SASL~P~k~~fVaGged~~~~kfDy~TgeE-i~~~-nkgh~g 268 (334)
T KOG0278|consen 227 ------------------------------------VESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-IGSY-NKGHFG 268 (334)
T ss_pred ------------------------------------cccccccCCCceEEecCcceEEEEEeccCCce-eeec-ccCCCC
Confidence 89999999999999999999999999999833 3332 235899
Q ss_pred EEEEEEeecCCCEEEEEecCCCcccccccCCCcccc
Q 010296 469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNG 504 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~ 504 (513)
+|.||.|+|+|...++| +.||+|+||-+.++...+
T Consensus 269 pVhcVrFSPdGE~yAsG-SEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASG-SEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred ceEEEEECCCCceeecc-CCCceEEEEEecCCCchh
Confidence 99999999999999999 999999999887765443
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-36 Score=272.86 Aligned_cols=282 Identities=20% Similarity=0.306 Sum_probs=249.0
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
.+.+..|+..|.++.|||..++++++-..|.|.||+.++...++.+ .-..-+|.+..|-+-
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-------------------eV~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-------------------EVSEVPVRAAKFIAR 66 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-------------------eecccchhhheeeec
Confidence 3456679999999999999999999999999999999999888765 344667999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEE
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTI 310 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~ 310 (513)
.+++++|+.|..|+||+..+++.+..|..|...|.+++.+|.-.+++++|.|-+|++||.... .+.+++.+|..-|.++
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999865 6788999999999999
Q ss_pred EeeCC--CeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC---eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296 311 DCLRK--ERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND---EFLSGSDDGSIELWSLLRKKPVYIVKNA 384 (513)
Q Consensus 311 ~~~~~--~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~---~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (513)
+|+|. +.|++++-|++|++|.+....+. ++.+|...|.|+.+.+.| .+++|+.|.+|+|||..+..++.++..+
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH 226 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH 226 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc
Confidence 99994 48999999999999999876654 788999999999999988 6999999999999999999999998643
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~ 464 (513)
...|..++|+|.-.++++|+.||+||||+..+- +.-..+.-
T Consensus 227 -------------------------------------t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~- 267 (794)
T KOG0276|consen 227 -------------------------------------TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY- 267 (794)
T ss_pred -------------------------------------cccceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc-
Confidence 333999999999999999999999999998775 22222221
Q ss_pred CcccEEEEEEeecCCCEEEEEecCCCccc
Q 010296 465 PLVGFVNSLAFAKSGQFLIAGVGQEPRLG 493 (513)
Q Consensus 465 ~~~~~v~~v~~sp~~~~l~~~~~~dg~v~ 493 (513)
..+.|+||+-.+.+..+++| .+.|.|.
T Consensus 268 -gleRvW~I~~~k~~~~i~vG-~Deg~i~ 294 (794)
T KOG0276|consen 268 -GLERVWCIAAHKGDGKIAVG-FDEGSVT 294 (794)
T ss_pred -CCceEEEEeecCCCCeEEEe-ccCCcEE
Confidence 46789999999988888888 6777664
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=271.64 Aligned_cols=343 Identities=18% Similarity=0.231 Sum_probs=273.1
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccc--c------------ccCCChhhhccCCC-CCCCCCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV--K------------YLWPSEEVLKSHGA-KDPQGRA 216 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~--~------------~~~~~~~~~~~~~~-~~~~~~~ 216 (513)
...+.+|++.|.++-|..+...|+|.+.||.+.+|.+...-.. . .....++....... .....-+
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 5678899999999999999999999999999999998722100 0 00000000000000 0001112
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCc
Q 010296 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRA 295 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 295 (513)
......|++.+|++..+.||+|-..|.+.+|.+..-.+++.+.-...+|..++|+..|..|+.|+. -|.+.||+..+..
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 223377999999999999999999999999999999999999888889999999999999998776 4899999999999
Q ss_pred eeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~ 372 (513)
.+....+|...+.+++++|||.++ +|+.||.|++||...+-+. ++..|.+.|+.+.|+..|+ +++.+-||+|+.||+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 999999999999999999999655 8889999999999988776 8889999999999999987 779999999999999
Q ss_pred CCCCeeEEeecCCCcccCCCCcccCcCcc----------ccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296 373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKI----------SNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG 442 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~ 442 (513)
...+..+++....+..-...+..+.+..+ .+|....|++.-. ..+|.++|.+++|+|.+..|++||+
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi---LsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI---LSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh---hcCCCCcceeeEEccccCeEEeccc
Confidence 99999999887776654444444444333 3333334433222 2789999999999999999999999
Q ss_pred CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
|.+||+|++-.......++ .+...+..++|+|+|+-|+++ .-||.|.+||...+.
T Consensus 499 DkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAV 553 (893)
T ss_pred cceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEE-EecceEEEEEhhhce
Confidence 9999999997764334433 366779999999999999999 899999999976554
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.3e-37 Score=264.30 Aligned_cols=257 Identities=21% Similarity=0.343 Sum_probs=225.6
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
+|.......-..+++|..+|.++.|++++.++++|..+|.|++|+..-...... ...|...
T Consensus 122 LWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~-------------------~ahh~ea 182 (464)
T KOG0284|consen 122 LWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII-------------------QAHHAEA 182 (464)
T ss_pred EecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh-------------------hHhhhhh
Confidence 455544455567889999999999999999999999999999999765443321 2456689
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
|++++|+|+...|++++.||+|+|||....+.-..+.+|.-.|.++.|+|....|++++.|..|++||.+++.++.++.+
T Consensus 183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred hheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCee
Q 010296 303 HQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPV 378 (513)
Q Consensus 303 ~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~ 378 (513)
|...|..+.|++++ .|++++.|..+++||+++.+.+ .+++|...++++.|+|-. .|.+|+.||.|..|.+...+++
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence 99999999999987 5559999999999999965544 788899999999999965 4789999999999999877777
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
..+. .+|...|++++|+|=|.+|++|+.|.++++|.-...
T Consensus 343 ~~i~------------------------------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 343 GEIP------------------------------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cCCC------------------------------------cccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 7666 444555999999999999999999999999986544
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=257.54 Aligned_cols=275 Identities=22% Similarity=0.397 Sum_probs=230.7
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
....|+|+.+. ...+++|..|++|+|||..+..++..+ .+|++.|.|+.|. .+.|++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-------------------~GHtGSVLCLqyd--~rviis 252 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-------------------TGHTGSVLCLQYD--ERVIVS 252 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-------------------hcCCCcEEeeecc--ceEEEe
Confidence 45789999994 457999999999999999988877754 7999999999996 569999
Q ss_pred EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc---eeEEeecccCCeEEEEeeC
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA---YISTLFGHQSEVLTIDCLR 314 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~ 314 (513)
|+.|.+|+|||+++++++.++-.|...|..+.|+. .++++++.|.+|.+||+.... +.+.+.+|...|+.+.|..
T Consensus 253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred cCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence 99999999999999999999999999999999974 589999999999999998764 3456789999999999964
Q ss_pred CCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296 315 KERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK 392 (513)
Q Consensus 315 ~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 392 (513)
. .+++++.|.+|++|++.+...+ ++.+|...|.|+.+ .++ +++|++|.+|++||+..|+++..++.+..
T Consensus 331 k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe------ 401 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE------ 401 (499)
T ss_pred c-eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH------
Confidence 4 7789999999999999998877 67788888887765 344 67999999999999999999998865443
Q ss_pred CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce------eeeeecCc
Q 010296 393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI------QPLYNLPL 466 (513)
Q Consensus 393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~------~~~~~~~~ 466 (513)
-|.++.|. .+.+++|+.||+|+|||+..+..+. .......|
T Consensus 402 -------------------------------LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h 448 (499)
T KOG0281|consen 402 -------------------------------LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH 448 (499)
T ss_pred -------------------------------hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc
Confidence 39999995 5689999999999999998874332 22233357
Q ss_pred ccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
.+.|..+.|. ...++++ +.|.+|.+||...+..
T Consensus 449 sgRVFrLQFD--~fqIvss-sHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 449 SGRVFRLQFD--EFQIISS-SHDDTILIWDFLNGPP 481 (499)
T ss_pred cceeEEEeec--ceEEEec-cCCCeEEEEEcCCCCc
Confidence 8999999994 4556666 7788999999876543
No 36
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=254.03 Aligned_cols=281 Identities=16% Similarity=0.246 Sum_probs=225.3
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-EE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR-YL 235 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 235 (513)
...++|++|.|+|....|++|+.|++++||.+........ ..+.-...+|.+.+|+|+|. .+
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l-----------------qS~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL-----------------QSIHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhh-----------------eeeeeccCccceeeecCCCceEE
Confidence 3468999999999999999999999999999986543321 12234467899999999999 88
Q ss_pred EEEeCCCcEEEEeCCCcceee--eccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQ--AFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC 312 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 312 (513)
++++....++.||+.+.+... .+.++. ..+.....++++++|+..+..|.|.+....+++.+..++ ..+.|..++|
T Consensus 274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~f 352 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTF 352 (514)
T ss_pred EecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEE
Confidence 999999999999999887543 333333 356778889999999999999999999999999999887 7788999999
Q ss_pred eCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCC--eeEEEeecCCe-EEEEeCCCCEEEEecCC------CCeeEEee
Q 010296 313 LRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASS--LECCCFISNDE-FLSGSDDGSIELWSLLR------KKPVYIVK 382 (513)
Q Consensus 313 ~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~-~~~~~~dg~i~iwd~~~------~~~~~~~~ 382 (513)
+.++ .+++++.+|.|++||++...++......+. -+++|.++++. |++|+..|.|.|||..+ .+|+..+.
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 9988 456888899999999999987754444444 35677778885 78999999999999654 34444443
Q ss_pred cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--CCCcEEEEEeCCCCcceee
Q 010296 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--GNGSVRLWAIESETKDIQP 460 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~v~vwd~~~~~~~~~~ 460 (513)
+.. ..|++|.|+|++++||.+| ....+|+-.+.+. ..
T Consensus 433 NLt-------------------------------------t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~----TV 471 (514)
T KOG2055|consen 433 NLT-------------------------------------TAITSLQFNHDAQILAIASRVKKNALRLVHVPSC----TV 471 (514)
T ss_pred hhh-------------------------------------eeeeeeeeCcchhhhhhhhhccccceEEEeccce----ee
Confidence 222 2399999999999999887 4578999999876 33
Q ss_pred eeecC----cccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 461 LYNLP----LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 461 ~~~~~----~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
+..+| .-+.|+|++|||.|.+||+| ...|+|.+|.+
T Consensus 472 FsNfP~~n~~vg~vtc~aFSP~sG~lAvG-Ne~grv~l~kL 511 (514)
T KOG2055|consen 472 FSNFPTSNTKVGHVTCMAFSPNSGYLAVG-NEAGRVHLFKL 511 (514)
T ss_pred eccCCCCCCcccceEEEEecCCCceEEee-cCCCceeeEee
Confidence 33333 35679999999999999999 99999999975
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=271.21 Aligned_cols=339 Identities=19% Similarity=0.279 Sum_probs=258.7
Q ss_pred EeeccccCCCcccchhhhhc-cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCC
Q 010296 138 VIASRVQKPEATDEFRVLLK-HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRA 216 (513)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (513)
...-++|..+....++.++. |++||.-++|+|.+..|++|+.|+.|+|||+..+.+.+.+
T Consensus 83 s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f------------------- 143 (775)
T KOG0319|consen 83 SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF------------------- 143 (775)
T ss_pred cceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-------------------
Confidence 34556788888899999998 9999999999999999999999999999999999988865
Q ss_pred CCCcccEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 010296 217 TKQSKHILALAVSSDGR--YLASGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 293 (513)
.+|.+.|.++.|+|+-+ .|++|..|+.+++||+.+... +..+..|.+.|++++|++++..+++++.|..+.|||+.+
T Consensus 144 kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 144 KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence 89999999999999755 588999999999999996654 888899999999999999999999999999999998732
Q ss_pred CceeEEe-------------------------------------------------------------------------
Q 010296 294 RAYISTL------------------------------------------------------------------------- 300 (513)
Q Consensus 294 ~~~~~~~------------------------------------------------------------------------- 300 (513)
.+...++
T Consensus 224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 224 YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence 2111100
Q ss_pred ----------------ecccCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEE
Q 010296 301 ----------------FGHQSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSG 361 (513)
Q Consensus 301 ----------------~~~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~ 361 (513)
.+....|..+.|.. +..+++++..+.+++|++.+..+..+.+|...|.++.....| .|++|
T Consensus 304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG 383 (775)
T ss_pred eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe
Confidence 12233444555433 235678888899999999988888999999999999966666 68899
Q ss_pred eCCCCEEEEecCCCCe----eEEeecCCCcccCCCCcccCcCccccccCCCCCC----------------CCCCcCCCCC
Q 010296 362 SDDGSIELWSLLRKKP----VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNL----------------NPGSYHSSSA 421 (513)
Q Consensus 362 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~ 421 (513)
+.|.++++|.+..+.. +... ..|........+......+.+..+....+ ....+....|
T Consensus 384 sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred cCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 9999999998844322 1111 22222222222222222222111111111 1112234567
Q ss_pred cceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 422 YSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 422 ~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
..-|++++++|+.++|||||.|.+.+||++... .....+.. |...|.+|.|+|..+.|+++ +.|++|+||.....
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsG--H~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSG--HTRGVWCVSFSKNDQLLATC-SGDKTVKIWSISTF 537 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCc-eEEEEeeC--CccceEEEEeccccceeEec-cCCceEEEEEeccc
Confidence 888999999999999999999999999999955 44555554 89999999999999999999 89999999987653
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.7e-35 Score=250.38 Aligned_cols=254 Identities=14% Similarity=0.249 Sum_probs=216.1
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
+|.......+..+.+|+..|+|+.|+.+|.+||||+.+|.|+||...++.....+ ......
T Consensus 90 lW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-------------------~~e~~d 150 (399)
T KOG0296|consen 90 LWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-------------------DQEVED 150 (399)
T ss_pred EEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-------------------ecccCc
Confidence 4556666678889999999999999999999999999999999999999877654 234556
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|++++++..||+|++|++.+++++..+..
T Consensus 151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~ 230 (399)
T KOG0296|consen 151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ 230 (399)
T ss_pred eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecc
Confidence 88899999999999999999999999999888999999999999999999999999999999999999999988766541
Q ss_pred c---------------------------------------------------cCCeEEEEeeCC---Ce-EEEEeCCCcE
Q 010296 303 H---------------------------------------------------QSEVLTIDCLRK---ER-VLTVGRDRSM 327 (513)
Q Consensus 303 ~---------------------------------------------------~~~v~~~~~~~~---~~-~~~~~~d~~i 327 (513)
. ...+.++.+.|- =. .++++.||+|
T Consensus 231 ~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i 310 (399)
T KOG0296|consen 231 AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI 310 (399)
T ss_pred cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE
Confidence 0 001111122221 11 3467789999
Q ss_pred EEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCC
Q 010296 328 QLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSE 407 (513)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (513)
.|||+..........|..+|..+.|.+...+++++.+|.|++||.++|+.+.++
T Consensus 311 ~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-------------------------- 364 (399)
T KOG0296|consen 311 AIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-------------------------- 364 (399)
T ss_pred EEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE--------------------------
Confidence 999999888888888999999999999667999999999999999999999888
Q ss_pred CCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 408 NGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 408 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
.+|...|.+++++|++++++|+|.|++.+||++.
T Consensus 365 -----------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 365 -----------TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -----------ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 4555669999999999999999999999999864
No 39
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=9.4e-36 Score=257.88 Aligned_cols=297 Identities=20% Similarity=0.288 Sum_probs=249.2
Q ss_pred CCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL 224 (513)
Q Consensus 145 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (513)
+.-+......+..|.+.|..+.|-++...|+||+.|..|++|++...+... ...+.+..++|+
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it 223 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNIT 223 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCcc
Confidence 334556677888999999999999999999999999999999998776221 113467788899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc
Q 010296 225 ALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ 304 (513)
Q Consensus 225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 304 (513)
++.|.++++++++++.|+.+++|++...+...++.+|+..|+++.|......+++|+.|.+|++||+....|..++. ..
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~ 302 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PG 302 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cc
Confidence 99999999999999999999999999999999999999999999998877779999999999999999988887765 34
Q ss_pred CCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 305 SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 305 ~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
..+..|.+. ...++++..|++|++||+++..........+.|+++..++++. +++++.|.++.++|+++......+..
T Consensus 303 S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 303 SQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ccccceEec-ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 455666654 4456788899999999999998887777777999999999996 88889999999999999988877753
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
..- ....-.+.+.|||++.|+++||.||.|+||++.++ +.-..+..
T Consensus 382 ~g~---------------------------------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~ 427 (459)
T KOG0288|consen 382 EGF---------------------------------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSL 427 (459)
T ss_pred ccc---------------------------------ccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEecc
Confidence 221 11112889999999999999999999999999998 33333333
Q ss_pred cCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
......|++++|+|.|.+|+++ +.++.+.+|
T Consensus 428 s~s~~aI~s~~W~~sG~~Llsa-dk~~~v~lW 458 (459)
T KOG0288|consen 428 STSNAAITSLSWNPSGSGLLSA-DKQKAVTLW 458 (459)
T ss_pred CCCCcceEEEEEcCCCchhhcc-cCCcceEec
Confidence 2223379999999999999999 999999999
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-35 Score=273.84 Aligned_cols=287 Identities=20% Similarity=0.338 Sum_probs=247.6
Q ss_pred hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234 (513)
Q Consensus 155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 234 (513)
+..-+..|..++|+|...+++++-..|.|++||..-+.++..+ ..|.++|..++|+|.+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-------------------deHdGpVRgv~FH~~qpl 65 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-------------------DEHDGPVRGVDFHPTQPL 65 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-------------------hccCCccceeeecCCCCe
Confidence 4456788999999999999999999999999999999988755 789999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296 235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR 314 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 314 (513)
|++|+.|..|+||+..+.+++.++.+|-..|..+.|++.-.+++++|.|.+|+||+..+++++..+.+|..-|.|..|+|
T Consensus 66 FVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred EEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCeEEEEeCCCcEEEEecCCCe------------------------------eeEEecCCCCeeEEEeecCC-eEEEEe
Q 010296 315 -KERVLTVGRDRSMQLWKVPEES------------------------------RLVFRAPASSLECCCFISND-EFLSGS 362 (513)
Q Consensus 315 -~~~~~~~~~d~~i~iwd~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~-~~~~~~ 362 (513)
...+++++-|.+|++||+..-+ ...+.+|...|..++|+|.- .+++|+
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 4577799999999999985311 01356788899999999976 478999
Q ss_pred CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296 363 DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG 442 (513)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~ 442 (513)
.|..|++|.+...+.=.. .. -.+|...|+++-|+|...++++.|.
T Consensus 226 DDRqVKlWrmnetKaWEv-Dt----------------------------------crgH~nnVssvlfhp~q~lIlSnsE 270 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEV-DT----------------------------------CRGHYNNVSSVLFHPHQDLILSNSE 270 (1202)
T ss_pred CcceeeEEEeccccceee-hh----------------------------------hhcccCCcceEEecCccceeEecCC
Confidence 999999999876442111 10 0566677999999999999999999
Q ss_pred CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
|++|+|||+... ..++.+.. ..+..+.++-+|..+++++| .|+.+.++.+...
T Consensus 271 DksirVwDm~kR-t~v~tfrr--endRFW~laahP~lNLfAAg--HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 271 DKSIRVWDMTKR-TSVQTFRR--ENDRFWILAAHPELNLFAAG--HDSGMIVFKLERE 323 (1202)
T ss_pred CccEEEEecccc-cceeeeec--cCCeEEEEEecCCcceeeee--cCCceEEEEEccc
Confidence 999999999887 45555554 46789999999999988776 4555667876654
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.7e-34 Score=245.45 Aligned_cols=283 Identities=23% Similarity=0.390 Sum_probs=235.3
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC---C
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG---R 233 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~ 233 (513)
.|.+.|.++... +++++||+.||.++||+..... ... ..+|.++|.+++|.... .
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~~-------------------~~Ght~~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IKT-------------------IVGHTGPIKSVAWVIKNSSSC 160 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EEE-------------------EecCCcceeeeEEEecCCccc
Confidence 489999999988 7899999999999999987544 332 36999999988886543 3
Q ss_pred EEEEEeCCCcEEEEeCCCcce----eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-----------------
Q 010296 234 YLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE----------------- 292 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----------------- 292 (513)
.|++++.|.++++|.++.+.. +..-.+|...|-++...+++..+++|+.|.+|.||+..
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 599999999999999887653 33445899999999999999999999999999999931
Q ss_pred --------CCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC
Q 010296 293 --------DRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSD 363 (513)
Q Consensus 293 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 363 (513)
++.++..+.+|..+|.++.|++.+.+++++.|.+|+.||+.++...........+.|+..+|... +++|+.
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC
Confidence 12356678899999999999998899999999999999999999988778888999999999775 779999
Q ss_pred CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecC
Q 010296 364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAG 442 (513)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~ 442 (513)
|..|++||.+++.-..... ...+|..+|.++.|+|.. ..|++|+.
T Consensus 321 dr~irl~DPR~~~gs~v~~----------------------------------s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQ----------------------------------SLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred CCceeecCCCCCCCceeEE----------------------------------eeecchhhhhheecCCCCceEEEEEec
Confidence 9999999998863211111 016777889999999965 57889999
Q ss_pred CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
||++++||+++...++-.+.. |...|.++.|+ .+.+|++| |.|.+|+++...+
T Consensus 367 D~t~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSG-GaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSG-GADNKLRIFKGSP 419 (423)
T ss_pred CCeEEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEec-cCcceEEEecccc
Confidence 999999999998545555544 88999999997 45678888 9999999986544
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-35 Score=248.17 Aligned_cols=253 Identities=20% Similarity=0.308 Sum_probs=229.6
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSK 221 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (513)
+|+....+..+.++||++.|..|+|+..|++|++++.|-.+++||..+. .+++ ...+|..
T Consensus 134 v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-------------------s~~gh~h 194 (406)
T KOG0295|consen 134 VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-------------------SLIGHEH 194 (406)
T ss_pred EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-------------------HhcCccc
Confidence 4666778889999999999999999999999999999999999999863 3333 2468899
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
.|.+++|-|.|.++++++.|.+|+.|++.++.++.+|.+|...|..+..+.||..+++++.|.+|++|-+.++++...+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeeCC----------C------eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeC
Q 010296 302 GHQSEVLTIDCLRK----------E------RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSD 363 (513)
Q Consensus 302 ~~~~~v~~~~~~~~----------~------~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~ 363 (513)
.|.-+|-+++|.|. + .+.+++.|++|++||+.++.++ .+.+|...|..++|+|.|+ |+++..
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 99999999999762 1 3558899999999999999877 7889999999999999997 669999
Q ss_pred CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296 364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN 443 (513)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 443 (513)
|+++++||+++++++.++. .|...++++.|..+..+++||+-|
T Consensus 355 Dktlrvwdl~~~~cmk~~~-------------------------------------ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCMKTLE-------------------------------------AHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred CCcEEEEEeccceeeeccC-------------------------------------CCcceeEEEecCCCCceEEecccc
Confidence 9999999999999998885 333449999999999999999999
Q ss_pred CcEEEEEe
Q 010296 444 GSVRLWAI 451 (513)
Q Consensus 444 g~v~vwd~ 451 (513)
..+++|..
T Consensus 398 qt~KvwEc 405 (406)
T KOG0295|consen 398 QTVKVWEC 405 (406)
T ss_pred ceeeeeec
Confidence 99999974
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=245.12 Aligned_cols=290 Identities=20% Similarity=0.295 Sum_probs=243.0
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
+..+.+-|..|+|||+||++|+.||.|-||++.+|+..+-+. ...+..+--+..+|.|+.||.|...||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-----------YQAqd~fMMmd~aVlci~FSRDsEMlA 279 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----------YQAQDNFMMMDDAVLCISFSRDSEMLA 279 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-----------hhhhcceeecccceEEEeecccHHHhh
Confidence 456779999999999999999999999999999998765331 011113345778999999999999999
Q ss_pred EEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 237 SGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
+|+.||.|+||.+.+|.+++.|. .|+..|+|+.|+.++..+++++.|.++++.-+.+|+++..+.+|...|+...|.++
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 99999999999999999999997 79999999999999999999999999999999999999999999999999999998
Q ss_pred C-eEEEEeCCCcEEEEecCCCeeeE-Ee--cCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCccc
Q 010296 316 E-RVLTVGRDRSMQLWKVPEESRLV-FR--APASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD 389 (513)
Q Consensus 316 ~-~~~~~~~d~~i~iwd~~~~~~~~-~~--~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 389 (513)
| .+++++.||+|++|+.++..++. +. +...+|..+...|.+ .++++...++|+|.++. |+.+..+.....
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR--- 435 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR--- 435 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc---
Confidence 8 67799999999999999888763 32 344577788877766 48899999999999864 556666653321
Q ss_pred CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccE
Q 010296 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGF 469 (513)
Q Consensus 390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 469 (513)
..+...+.+.||.|.++++.+.|+.++.|.+.++ ..-..+.. |...
T Consensus 436 -------------------------------EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~V--hEkd 481 (508)
T KOG0275|consen 436 -------------------------------EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPV--HEKD 481 (508)
T ss_pred -------------------------------cCCceEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeec--cccc
Confidence 1122567789999999999999999999999998 33333332 6677
Q ss_pred EEEEEeecCCCEEEEEecCCCcccccc
Q 010296 470 VNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 470 v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
|..++-+|..+.||+- +.||.+++|.
T Consensus 482 vIGl~HHPHqNllAsY-sEDgllKLWk 507 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASY-SEDGLLKLWK 507 (508)
T ss_pred ccccccCcccchhhhh-cccchhhhcC
Confidence 8889999998888887 9999999995
No 44
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=250.31 Aligned_cols=291 Identities=16% Similarity=0.224 Sum_probs=220.2
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
-..+++|+..|+++++.|.|..|++|+.|.+|++||+.........+. .........|.++.|++.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr--------------~l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR--------------QLQPCETHQINSLQYSVT 225 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhh--------------ccCcccccccceeeecCC
Confidence 346789999999999999999999999999999999987553321110 012234556999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceee------------eccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCce-e
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQ------------AFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAY-I 297 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~ 297 (513)
|..|++.+....++|+|-...+.+. .-++|...++|.+|+|..+ .+++++.||+++||++...+. +
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 9999988888999999965433322 2367999999999999764 588999999999999986543 3
Q ss_pred EEee-----cccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCee----eEEecCCC--CeeEEEeecCCe-EEEEeCC
Q 010296 298 STLF-----GHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESR----LVFRAPAS--SLECCCFISNDE-FLSGSDD 364 (513)
Q Consensus 298 ~~~~-----~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~----~~~~~~~~--~v~~~~~~~~~~-~~~~~~d 364 (513)
..+. +..-++++++|++++.++ +++.||.|.+|+...... .....|.. .|+|+.|+++|. |++-+.|
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 3332 234478999999999666 778899999999854332 24455655 899999999997 7799999
Q ss_pred CCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--
Q 010296 365 GSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-- 441 (513)
Q Consensus 365 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-- 441 (513)
+++++||++..+ ++...... ....+-+.++|||+.++|++|.
T Consensus 386 ~tLKvWDLrq~kkpL~~~tgL-----------------------------------~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPLNVRTGL-----------------------------------PTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred CceeeeeccccccchhhhcCC-----------------------------------CccCCCCccccCCCceEEEecccc
Confidence 999999998754 44443321 1112267899999999999986
Q ss_pred ----CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 442 ----GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 442 ----~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
..|.+.+||..+. ..+..+.. ....|..+.|+|.-+.|+++ +.||.++++
T Consensus 431 ~~~~~~g~L~f~d~~t~-d~v~ki~i--~~aSvv~~~WhpkLNQi~~g-sgdG~~~vy 484 (641)
T KOG0772|consen 431 PNGMTAGTLFFFDRMTL-DTVYKIDI--STASVVRCLWHPKLNQIFAG-SGDGTAHVY 484 (641)
T ss_pred cCCCCCceEEEEeccce-eeEEEecC--CCceEEEEeecchhhheeee-cCCCceEEE
Confidence 3478999998776 22222222 36778899999998888888 667888877
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=228.41 Aligned_cols=276 Identities=17% Similarity=0.220 Sum_probs=236.3
Q ss_pred hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-C
Q 010296 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-D 231 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~ 231 (513)
+.+++|.+.|.+|+|+-+|..|++|+.|+++.+|++........+ ...+|...|-.++|+| +
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCC
Confidence 667899999999999999999999999999999999877544433 4578999999999998 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEE
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTID 311 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 311 (513)
...|++++.|.+|++||+++++++..+....+. .-+.|+|+|.++++++.|..|.+.|.++.+.+.... ....+.-++
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence 678999999999999999999999888754444 458999999999999999999999999988776654 556678888
Q ss_pred eeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296 312 CLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL 388 (513)
Q Consensus 312 ~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 388 (513)
|+.++.++ .....|.|.|.....-+++ .+..|.....|+.|+|.|+ |++|+.|..+.+||+...-+++.+..
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR----- 229 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR----- 229 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----
Confidence 88766544 5555699999998876665 6788999999999999996 88999999999999999888888743
Q ss_pred cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296 389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
+.-+|..|.||.+|++||+||.|..|-|=++.++ ..+..+++.+
T Consensus 230 --------------------------------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG----d~~~eI~~~~ 273 (313)
T KOG1407|consen 230 --------------------------------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG----DRVWEIPCEG 273 (313)
T ss_pred --------------------------------ccCceEEEEeccCcceeeccCccceEEeEecccC----CeEEEeeccC
Confidence 3334999999999999999999999999999999 4556667889
Q ss_pred EEEEEEeecCCCEEEEEecC
Q 010296 469 FVNSLAFAKSGQFLIAGVGQ 488 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~ 488 (513)
+...|+|+|...+||.++++
T Consensus 274 ~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 274 PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CceeEEecCCCceeeEEecC
Confidence 99999999999999988543
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-33 Score=229.46 Aligned_cols=286 Identities=16% Similarity=0.260 Sum_probs=239.8
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR 233 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 233 (513)
.++||..+|+.|.|+.+|.+|++|+.|.++.||-..+|+.+-++ .+|.+.|+|++...+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-------------------~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-------------------DGHTGAVWCCDIDWDSK 65 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-------------------cCCCceEEEEEecCCcc
Confidence 57899999999999999999999999999999999888887754 89999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-----CCcEEEEeCC-------CCceeEEee
Q 010296 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-----DRTVKIWNAE-------DRAYISTLF 301 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~ 301 (513)
+|++|+.|.++++||+.+|+++..++ ...+|..+.|+++|++++.+.. .+.|.++|++ ...+...+.
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 99999999999999999999999998 6678999999999998876654 4679999998 445677788
Q ss_pred cccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296 302 GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~ 377 (513)
.+...++.+.|.|-+ .+++|..+|.|.+||++++... ....|...|+.+.++++.. |++++.|.+-++||..+...
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence 888999999999976 5568889999999999998665 3456788999999999985 88999999999999999999
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC--
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET-- 455 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~-- 455 (513)
+.++....+ |++.+++|....++.|+.....-|=-.....
T Consensus 225 ~Kty~te~P--------------------------------------vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GK 266 (327)
T KOG0643|consen 225 LKTYTTERP--------------------------------------VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGK 266 (327)
T ss_pred EEEeeeccc--------------------------------------ccceecccccceEEecCCceeeeeeeecccccc
Confidence 998876554 9999999988888777654333222222110
Q ss_pred -----------cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 456 -----------KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 456 -----------~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
..+..+. .|-++|++|+|+|+|+..++| |.||.|++....+.
T Consensus 267 FEArFyh~i~eEEigrvk--GHFGPINsvAfhPdGksYsSG-GEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 267 FEARFYHLIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSG-GEDGYVRLHHFDSN 319 (327)
T ss_pred hhhhHHHHHHHHHhcccc--ccccCcceeEECCCCcccccC-CCCceEEEEEeccc
Confidence 0111122 388999999999999999988 99999999865543
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=262.11 Aligned_cols=295 Identities=18% Similarity=0.299 Sum_probs=251.2
Q ss_pred CCCcccchhhhhccCCCeEEEEE-CCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296 145 KPEATDEFRVLLKHRQSVTAVAL-SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223 (513)
Q Consensus 145 ~~~~~~~~~~~~~h~~~V~~~~~-s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (513)
+.........+.|..+.|..|+| .|..++||+++..+.+++|++.+..+. .+.+|...|
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--------------------ii~GH~e~v 368 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--------------------IIPGHTEAV 368 (775)
T ss_pred EccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--------------------EEeCchhhe
Confidence 45666777888899999999998 467899999999999999988877654 247999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCce--
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAY-- 296 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-- 296 (513)
.++....+|-+|++|+.|.++++|.++.+. ++....+|.+.|.+++++..+ .+|+++|.|++|++|++...+.
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 999966678899999999999999874432 456678899999999997755 5788999999999999976221
Q ss_pred ---e----EEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296 297 ---I----STLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGS 366 (513)
Q Consensus 297 ---~----~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~ 366 (513)
+ .+...|...|++++++|+..++ +|+.|.+.++|++...... ++.+|...+.|+.|++..+ +++++.|++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence 1 1235699999999999988665 8999999999999966655 7899999999999999986 779999999
Q ss_pred EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296 367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV 446 (513)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v 446 (513)
|+||.+.+..++.++. +|...|..+.|-.+++.|++++.||.|
T Consensus 529 vKIW~is~fSClkT~e-------------------------------------GH~~aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 529 VKIWSISTFSCLKTFE-------------------------------------GHTSAVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EEEEEeccceeeeeec-------------------------------------CccceeEeeeeeeCCcEEEeccCCCcE
Confidence 9999999999999995 444559999999999999999999999
Q ss_pred EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
+||++++. .....+.. |...|++++-+|...++++| +.||+|.+|.-.+.
T Consensus 572 KlWnikt~-eC~~tlD~--H~DrvWaL~~~~~~~~~~tg-g~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 572 KLWNIKTN-ECEMTLDA--HNDRVWALSVSPLLDMFVTG-GGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccch-hhhhhhhh--ccceeEEEeecCccceeEec-CCCeEEEEeecCcH
Confidence 99999998 45555554 89999999999999988888 99999999965443
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=240.13 Aligned_cols=265 Identities=20% Similarity=0.348 Sum_probs=234.8
Q ss_pred cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK 221 (513)
Q Consensus 142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (513)
.+|+....+...++.||...|..+++|+...||++++.|+.|+.||+...+.++.+ .+|-.
T Consensus 176 kIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-------------------hGHlS 236 (460)
T KOG0285|consen 176 KIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-------------------HGHLS 236 (460)
T ss_pred EEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-------------------ccccc
Confidence 36888888999999999999999999999999999999999999999999988754 79999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
.|+|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++...++.
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt 316 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT 316 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred cccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296 302 GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
.|...|.+++.+|...+++.+....|+-|++..+..+ .+.+|...+.+++...++.+++|+.+|.|.+||.+++-..+.
T Consensus 317 ~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 317 HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred cccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccc
Confidence 9999999999999887776666678999999887765 567888899999999999999999999999999999866554
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
+...... |. ......|++.+|...|..|++|..|.+|++|.-...
T Consensus 397 ~~t~vqp---------------------GS--------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 397 GQTIVQP---------------------GS--------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccccccC---------------------Cc--------cccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 4321110 00 112233999999999999999999999999986554
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=233.87 Aligned_cols=251 Identities=22% Similarity=0.356 Sum_probs=215.5
Q ss_pred CCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEE
Q 010296 211 DPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIW 289 (513)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 289 (513)
.|.....+|.+.|+.+.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.|..+.|.++++.|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3455678999999999999999999999999999999954 345567788999999999999999999999999999999
Q ss_pred eCCCCceeEEeecccCCeEEEEeeCCC-eEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCCCC
Q 010296 290 NAEDRAYISTLFGHQSEVLTIDCLRKE-RVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDDGS 366 (513)
Q Consensus 290 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~ 366 (513)
|++++++++.+++|..-|+++....-| .++ +++.|+++++||+++...+........++++.|...+ .+++|+-|+.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999999999999999999999855545 444 7778999999999998888777778899999999887 4899999999
Q ss_pred EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296 367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV 446 (513)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v 446 (513)
|++||++....++++. +|..+|+.+..+|+|.++.+-+.|.+|
T Consensus 198 ikvWd~r~~d~~~~ls-------------------------------------Gh~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLS-------------------------------------GHADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred eeeeccccCcceEEee-------------------------------------cccCceeeEEeccCCCccccccccceE
Confidence 9999999999998884 455559999999999999999999999
Q ss_pred EEEEeCCC---CcceeeeeecCcc--cEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 447 RLWAIESE---TKDIQPLYNLPLV--GFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 447 ~vwd~~~~---~~~~~~~~~~~~~--~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
++||++.. .+.+..+....|. -....++|+|++.++.++ +.|..+.+||...
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag-s~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG-SADRFVYVWDTTS 297 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc-cccceEEEeeccc
Confidence 99999754 2224444443332 335678999999999888 8899999998765
No 50
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=226.75 Aligned_cols=306 Identities=19% Similarity=0.345 Sum_probs=232.1
Q ss_pred hhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 154 VLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
.-..-.+.|.+|+||| ...+|+.++.||+||+|+++.. .... .....|.++|.+++|+.+
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsdd 83 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDD 83 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccC
Confidence 3345578999999999 4556668999999999999874 2221 123578999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC--eEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS--ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT 309 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 309 (513)
|..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... .|+||++|.+|+.||++...++.++. -...+++
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 9999999999999999999995 455667999999999988665 68999999999999999988888876 5667777
Q ss_pred EEeeCCCeEEEEeCCCcEEEEecCCCeee---EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC--CeeEEeec
Q 010296 310 IDCLRKERVLTVGRDRSMQLWKVPEESRL---VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK--KPVYIVKN 383 (513)
Q Consensus 310 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~--~~~~~~~~ 383 (513)
+..- ...++++..++.|.+|++..+... ........+.|++..++.. ++.|+..|.+-|..+..+ +.-.+++.
T Consensus 162 ~Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 162 ADVL-YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred hhcc-CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 7653 345667888999999999765443 2223445678888887764 899999999999988876 33444443
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
+..... . ...-..|++|+|+|.-..|+|++.||++.+||-... ..++..
T Consensus 241 HR~~~~---------------------~-------~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s-- 289 (347)
T KOG0647|consen 241 HRSTNS---------------------V-------NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTS-- 289 (347)
T ss_pred eccCCC---------------------C-------CCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhcc--
Confidence 332110 0 011234999999999999999999999999998776 222222
Q ss_pred cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceEEEecc
Q 010296 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIK 511 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~ 511 (513)
..+..+|++.+|+.+|.++|.+.|.|-.-.-=...+..++.+++++..
T Consensus 290 ~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~~I~l~~~~ 337 (347)
T KOG0647|consen 290 ETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKPQIFLHPVS 337 (347)
T ss_pred CcCCCccceeEecCCCCEEEEEeecccccccccCCCCCCCeEEEeecc
Confidence 337899999999999999999989882221112344556778887754
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-33 Score=245.06 Aligned_cols=277 Identities=19% Similarity=0.287 Sum_probs=232.0
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
..+|++++|+|..++=+.....-.|.||+..+......+ ......|+++.|..||++|++|
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~-------------------srFk~~v~s~~fR~DG~LlaaG 86 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTF-------------------SRFKDVVYSVDFRSDGRLLAAG 86 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhH-------------------HhhccceeEEEeecCCeEEEcc
Confidence 478999999997665333333468999999887766643 4557789999999999999999
Q ss_pred eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-
Q 010296 239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE- 316 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 316 (513)
...|.|+|+|+.+...++.+.+|+.+|..+.|+|.++. |++|+.|+.+++||+.+......+.+|...|.|.+|+|..
T Consensus 87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAND 166 (487)
T ss_pred CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCC
Confidence 99999999998887788999999999999999997654 6688889999999999988766889999999999999954
Q ss_pred -eEEEEeCCCcEEEEecCCC-eeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296 317 -RVLTVGRDRSMQLWKVPEE-SRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF 394 (513)
Q Consensus 317 -~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.+++|+.||.|++||++.. ..+....|..+|..+.+.|.|.+++......|+|||+.+|..+....
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~------------ 234 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM------------ 234 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh------------
Confidence 4669999999999999987 56677889999999999999876666667789999999664433322
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA 474 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~ 474 (513)
..|...|+|+++..++..|++|+-|+.|++|++.+. +........++|.+++
T Consensus 235 ------------------------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----Kvv~s~~~~~pvLsia 286 (487)
T KOG0310|consen 235 ------------------------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----KVVHSWKYPGPVLSIA 286 (487)
T ss_pred ------------------------hcccceEEEEEeecCCceEeecccccceEEEEccce----EEEEeeecccceeeEE
Confidence 224455999999999999999999999999997664 5566666789999999
Q ss_pred eecCCCEEEEEecCCCccccc
Q 010296 475 FAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 475 ~sp~~~~l~~~~~~dg~v~~W 495 (513)
.+|+++.+++| ..+|.+.+=
T Consensus 287 vs~dd~t~viG-msnGlv~~r 306 (487)
T KOG0310|consen 287 VSPDDQTVVIG-MSNGLVSIR 306 (487)
T ss_pred ecCCCceEEEe-cccceeeee
Confidence 99999999999 778777655
No 52
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-34 Score=244.44 Aligned_cols=292 Identities=15% Similarity=0.273 Sum_probs=239.7
Q ss_pred cchhhhhccCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 150 DEFRVLLKHRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
..+..|.+|...|.|++=+|.. ..+++|+.||.|+|||+....+...+ ..|.+.|..|++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-------------------~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-------------------KAHEGLVRGICV 117 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-------------------ecccCceeeEEe
Confidence 4456778999999999999987 78999999999999999988877754 789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
.. ..+++++.|.+|+.|.+.. .++.++. ....+..+.-+..+..++||+. .|.|||.....++..+.-....|.
T Consensus 118 ~~--~~~~tvgdDKtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 118 TQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred cc--cceEEecCCcceeeeeccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCcee
Confidence 86 6788999999999999764 4666665 3455677777777778888875 599999998889998887888899
Q ss_pred EEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC-eeEEeecC
Q 010296 309 TIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK-PVYIVKNA 384 (513)
Q Consensus 309 ~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~-~~~~~~~~ 384 (513)
++.|+|-. .|+++++|+.|.+||++...++...........++|+|... |++++.|..++.||++... ++...
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~--- 268 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH--- 268 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh---
Confidence 99999964 45577799999999999998886666666777899999765 8899999999999998754 33222
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~ 464 (513)
..|.+.|.++.|||.|+-|++||.|.+|+||.++.+. . ..++..
T Consensus 269 ----------------------------------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-S-RdiYht 312 (433)
T KOG0268|consen 269 ----------------------------------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-S-RDIYHT 312 (433)
T ss_pred ----------------------------------cccceeEEEeccCCCcchhccccccceEEEeecCCCc-c-hhhhhH
Confidence 4455669999999999999999999999999998872 1 122211
Q ss_pred CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296 465 PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL 506 (513)
Q Consensus 465 ~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~ 506 (513)
.-...|.||.||-|.+|+++| ++|+.|++|......+.+++
T Consensus 313 kRMq~V~~Vk~S~Dskyi~SG-Sdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 313 KRMQHVFCVKYSMDSKYIISG-SDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred hhhheeeEEEEeccccEEEec-CCCcceeeeecchhhhcCCC
Confidence 235679999999999999999 99999999987777666654
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=254.92 Aligned_cols=284 Identities=19% Similarity=0.297 Sum_probs=245.0
Q ss_pred hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
..+.+|+..|.++++|.+...+++|+ .+.|+||+..+.++++++ ...-+.+..|-|.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi---------------------~~~y~l~~~Fvpgd 424 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTI---------------------TCGYILASKFVPGD 424 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEe---------------------ccccEEEEEecCCC
Confidence 35679999999999999988787776 478999999999998876 12368899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-----Cce--eEEe-----
Q 010296 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-----RAY--ISTL----- 300 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~--~~~~----- 300 (513)
+++++|...|.+.+||+.+...+.++++|.+.|++++.+|++..+++|+.|.+|++||..- +.. +-.+
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 9999999999999999999999999999999999999999999999999999999999742 111 1111
Q ss_pred ecccCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296 301 FGHQSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~ 377 (513)
..-...|.|+.++|++++++++ -|++|++|-+.+-+.. .+.+|.-+|.|+..+|++. +++|+.|.+|+||-+.-|.+
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 1246689999999999888655 7999999999987765 7789999999999999997 77999999999999999988
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD 457 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~ 457 (513)
...+ .+|...|+++.|.|...++++++.|+.|+-||-..- ..
T Consensus 585 HKS~-------------------------------------fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~ 626 (888)
T KOG0306|consen 585 HKSF-------------------------------------FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EE 626 (888)
T ss_pred hhhh-------------------------------------hcccCceeEEEEcccceeEEEecCcceEEeechhhh-hh
Confidence 7776 445555999999999999999999999999997765 45
Q ss_pred eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
++.+.. |...|+|++.+|+|.+++++ +.|.+|++|....
T Consensus 627 iq~L~~--H~~ev~cLav~~~G~~vvs~-shD~sIRlwE~td 665 (888)
T KOG0306|consen 627 IQKLDG--HHSEVWCLAVSPNGSFVVSS-SHDKSIRLWERTD 665 (888)
T ss_pred heeecc--chheeeeeEEcCCCCeEEec-cCCceeEeeeccC
Confidence 555554 88999999999999999999 9999999997654
No 54
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=235.83 Aligned_cols=324 Identities=16% Similarity=0.277 Sum_probs=265.3
Q ss_pred chhHHHHHHhhHHHHHhcCceeE--EeeccccCCCcccchhhhhccC-------CCeEEEEECCCCCeEEEEeCCceEEE
Q 010296 115 ERDSLVAKILQQEQLEESGRVRR--VIASRVQKPEATDEFRVLLKHR-------QSVTAVALSEDDSKGFSASKDGSILH 185 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~-------~~V~~~~~s~~~~~l~t~~~dg~v~i 185 (513)
....++.............+..+ .++..+.......++.....|. -.|+++...|..+.++||+.|..+.+
T Consensus 166 ~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ilTGG~d~~av~ 245 (506)
T KOG0289|consen 166 LSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATTDELSCLLQVASHTGLHSTSTPGITALDIIPSSSKILTGGEDKTAVL 245 (506)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhccccCCcccccHHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCcceecCCCCceEE
Confidence 34445555554444444444333 6777777777777777766665 46889999998889999999999999
Q ss_pred EeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCe
Q 010296 186 WDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPV 265 (513)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 265 (513)
+|..+++.+..+ .+|...|+.+.|+|+...+++++.|..|+||.............|..+|
T Consensus 246 ~d~~s~q~l~~~-------------------~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V 306 (506)
T KOG0289|consen 246 FDKPSNQILATL-------------------KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPV 306 (506)
T ss_pred Eecchhhhhhhc-------------------cCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccc
Confidence 999998888754 8999999999999999999999999999999998888888888999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc--cCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEe
Q 010296 266 SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH--QSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFR 341 (513)
Q Consensus 266 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~ 341 (513)
+.+..+|.|.||++++.|++..+.|++++.++...... .-.+++.+|+|||.++ ++..|+.|++||+..+... .|.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 99999999999999999999999999999988776532 2358999999999777 7889999999999988765 788
Q ss_pred cCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296 342 APASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS 420 (513)
Q Consensus 342 ~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 420 (513)
+|.++|..++|+.+|+ +++++.|+.|++||++..+...++......
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~--------------------------------- 433 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK--------------------------------- 433 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc---------------------------------
Confidence 8999999999999997 779999999999999998877777643321
Q ss_pred CcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.+.++.|.+.|.+|+.++.+ |+||-+....+.+..+.... |.+..+++.|....++|+++ |.|..++++.
T Consensus 434 ---~v~s~~fD~SGt~L~~~g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~-smd~~l~~~a 504 (506)
T KOG0289|consen 434 ---EVNSLSFDQSGTYLGIAGSD--LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAST-SMDAILRLYA 504 (506)
T ss_pred ---cceeEEEcCCCCeEEeecce--eEEEEEecccccceeeehhhhcccccceeeecccceEEeec-cchhheEEee
Confidence 38999999999999999776 55555543334455554443 67789999999999999999 8888877764
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-32 Score=222.50 Aligned_cols=252 Identities=25% Similarity=0.356 Sum_probs=205.8
Q ss_pred cccchhhh-hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296 148 ATDEFRVL-LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL 226 (513)
Q Consensus 148 ~~~~~~~~-~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 226 (513)
...+...+ .+|+..|.+++|+|.|++|++|+.|.++.||.-..+..... ..+.+|.+.|.|+
T Consensus 49 s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv-----------------~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 49 SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV-----------------ATLEGHENEVKCV 111 (312)
T ss_pred cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE-----------------eeeeccccceeEE
Confidence 34444444 37999999999999999999999999999999776543321 1458999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCc---ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---CCceeEEe
Q 010296 227 AVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---DRAYISTL 300 (513)
Q Consensus 227 ~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~ 300 (513)
+|+++|++||+++.|..|-||.+..+ .++..+..|+..|..+.|+|...+|++++.|.+|++|.-. .-.++.++
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl 191 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL 191 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence 99999999999999999999998744 4678899999999999999999999999999999999876 23678999
Q ss_pred ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC--Ce
Q 010296 301 FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK--KP 377 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~--~~ 377 (513)
.+|...|.+++|.+.| ++++++.|++++||-..+. ....|...+..+.|. ++.+++++.|+.|++|..... .+
T Consensus 192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p 267 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEP 267 (312)
T ss_pred cCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCc
Confidence 9999999999999977 8899999999999986532 223455678888898 888999999999999986532 11
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEecCCCcEEEEEeC
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~dg~v~vwd~~ 452 (513)
...+.. -....|..-|+++.|.|. ..+|++|+.||.|++|.+.
T Consensus 268 ~~~l~~--------------------------------~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 268 SWNLLA--------------------------------KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hHHHHH--------------------------------hhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111100 001445556999999994 6899999999999999874
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=228.21 Aligned_cols=251 Identities=20% Similarity=0.382 Sum_probs=227.8
Q ss_pred CcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296 147 EATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL 226 (513)
Q Consensus 147 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 226 (513)
....=+.++.+|.+.|.+..++.+....|+++.|-+-+|||..++..+..+ .|..-|.++
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--------------------~hkhivk~~ 106 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--------------------EHKHIVKAV 106 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--------------------hhhheeeeE
Confidence 444556788999999999999999999999999999999999999988765 678889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCcc-eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296 227 AVSSDGRYLASGGLDRHIHLWDTRIQE-HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS 305 (513)
Q Consensus 227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 305 (513)
+|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.+++++.|++|++||.+++..++++. ...
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s 185 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNS 185 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCC
Confidence 999999999999999999999998654 567788999999999999988999999999999999999999999987 678
Q ss_pred CeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296 306 EVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNA 384 (513)
Q Consensus 306 ~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (513)
+|+++.++++|++++....+.|.+||..+-..+........|.+.+.+|+.. |++|+.|..++.||..++..+..+.
T Consensus 186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-- 263 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-- 263 (334)
T ss_pred CCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--
Confidence 8999999999999999999999999999988888777788899999999875 8899999999999999998877642
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.+|.++|.|+.|+|+|...++||.||+|+||.+..+
T Consensus 264 ----------------------------------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 264 ----------------------------------KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ----------------------------------cCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 556677999999999999999999999999998776
No 57
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-32 Score=226.74 Aligned_cols=294 Identities=23% Similarity=0.393 Sum_probs=250.9
Q ss_pred cccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 148 ATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 148 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
....++.+.||.+.|..++.....+.+.+++.|.+.+||.++++.++..+ .+|.+.|.+|+
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-------------------~GH~GSVNsik 197 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-------------------TGHTGSVNSIK 197 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-------------------cccccceeeEE
Confidence 45667889999999999999988889999999999999999999998855 89999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC------CC----------------------------------cceeeeccCcCCCeEE
Q 010296 228 VSSDGRYLASGGLDRHIHLWDT------RI----------------------------------QEHIQAFPGHRGPVSC 267 (513)
Q Consensus 228 ~s~~~~~l~s~~~dg~i~vwd~------~~----------------------------------~~~~~~~~~~~~~v~~ 267 (513)
|++.+.++++++.|++..||.. .. ..++..|.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999971 11 0134567889999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCe--eeEEecCC
Q 010296 268 LTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEES--RLVFRAPA 344 (513)
Q Consensus 268 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~--~~~~~~~~ 344 (513)
..|...|+.++++++|.+..+||+.++..+..+.+|....+.++.+|..+|+ +.+.|.+.++||++..- ...|.+|.
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 9999999999999999999999999999999999999999999999988776 78889999999998543 23789999
Q ss_pred CCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc
Q 010296 345 SSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS 423 (513)
Q Consensus 345 ~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 423 (513)
..|+++.|..+.++++|+.|.+|+|||+++. .++.++....+
T Consensus 358 dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~------------------------------------- 400 (481)
T KOG0300|consen 358 DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP------------------------------------- 400 (481)
T ss_pred cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCc-------------------------------------
Confidence 9999999999999999999999999999886 46666654433
Q ss_pred eEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee--eecCcccEEEEEEeecCCC--EEEEEecCCCcccccccCC
Q 010296 424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL--YNLPLVGFVNSLAFAKSGQ--FLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~--~l~~~~~~dg~v~~W~~~~ 499 (513)
++.++++..+.+|+.--.+..|++||++.. ...... ....|...|+|++|..+.. -|+++ |-|..+.-|.+..
T Consensus 401 -~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftc-GFDR~v~gW~in~ 477 (481)
T KOG0300|consen 401 -ANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTC-GFDRMVAGWKINT 477 (481)
T ss_pred -cceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccCcccccccc-cccceeeeeEecc
Confidence 889999999899999999999999999875 222211 2234778899999986644 46677 8999999998765
Q ss_pred C
Q 010296 500 A 500 (513)
Q Consensus 500 ~ 500 (513)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=259.03 Aligned_cols=310 Identities=14% Similarity=0.231 Sum_probs=223.7
Q ss_pred chhhhh-ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 151 EFRVLL-KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 151 ~~~~~~-~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
..+.+. +|.+.|.+|.||+||+|||+||.|+.|+||.+........-......+. +.....+...++..-.-.
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~------~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMY------FEYNANSQIEPSTSSEEK 331 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhh------hhhhhccccCcccccccc
Confidence 334555 8999999999999999999999999999999987443211000000000 000000000000000000
Q ss_pred CCCC--EEEEEeCCCcEEEEeCC----CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296 230 SDGR--YLASGGLDRHIHLWDTR----IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH 303 (513)
Q Consensus 230 ~~~~--~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 303 (513)
..++ ..-.+.....+ +.... ..+++..|.+|.+.|..|.|+.+ ++|++++.|.+|++|++....|+..|. |
T Consensus 332 ~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-H 408 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-H 408 (712)
T ss_pred ccccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-c
Confidence 0011 11122222222 22211 34678889999999999999976 689999999999999999999999987 9
Q ss_pred cCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE
Q 010296 304 QSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 304 ~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
..-|+|++|+| +.+|++|+-|+.|+||++...+.........-|++++|.|+|. .++|+.+|.+++|+....+....
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 99999999999 4578899999999999999998887777778999999999997 66999999999999999887776
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCccee
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQ 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~ 459 (513)
+........ ...+. .|+.+.|.|.. ..|++.+.|..|||||.++. ..+.
T Consensus 489 ~~I~~~~~K----------------------------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~ 538 (712)
T KOG0283|consen 489 FHIRLHNKK----------------------------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVH 538 (712)
T ss_pred eeEeeccCc----------------------------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhh
Confidence 653322110 02222 69999999854 35777788999999999776 5566
Q ss_pred eeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 460 PLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 460 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
.+..+.....-....|+.||++|+++ ++|..|++|+....
T Consensus 539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~-seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 539 KFKGFRNTSSQISASFSSDGKHIVSA-SEDSWVYIWKNDSF 578 (712)
T ss_pred hhcccccCCcceeeeEccCCCEEEEe-ecCceEEEEeCCCC
Confidence 66665555556677999999999999 79999999997443
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-32 Score=254.08 Aligned_cols=225 Identities=19% Similarity=0.323 Sum_probs=201.2
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
+|+-.-...+..+..|.++|..++|+|.+.++++||.|..|+||++.+.+++.++ .+|..-
T Consensus 35 lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-------------------~GHlDY 95 (1202)
T KOG0292|consen 35 LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-------------------LGHLDY 95 (1202)
T ss_pred eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-------------------ccccce
Confidence 5666777888999999999999999999999999999999999999999988755 799999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-------
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA------- 295 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------- 295 (513)
|..+.|++.-.+++++|.|.+|+||++.+++++..+.+|...|.|..|+|....++++|.|.+|+|||+..-+
T Consensus 96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984210
Q ss_pred ----------------------eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee---EEecCCCCeeE
Q 010296 296 ----------------------YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL---VFRAPASSLEC 349 (513)
Q Consensus 296 ----------------------~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~ 349 (513)
....+.+|...|+-++|+|.- .+++|+.|..|++|.+...+.. +..+|...|.+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 123457899999999999965 5668999999999999766554 67899999999
Q ss_pred EEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296 350 CCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHP 386 (513)
Q Consensus 350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 386 (513)
+.|+|... +++.+.|++|+|||+...+.+.++...+.
T Consensus 256 vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend 293 (1202)
T KOG0292|consen 256 VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND 293 (1202)
T ss_pred EEecCccceeEecCCCccEEEEecccccceeeeeccCC
Confidence 99999764 77999999999999999999999875543
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.4e-33 Score=237.73 Aligned_cols=255 Identities=22% Similarity=0.405 Sum_probs=214.0
Q ss_pred cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK 221 (513)
Q Consensus 142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (513)
.+|+.....+.+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+++++++.++ .+|..
T Consensus 220 kiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-------------------ihHce 278 (499)
T KOG0281|consen 220 KIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-------------------IHHCE 278 (499)
T ss_pred EEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-------------------hhhcc
Confidence 357788889999999999999999995 468999999999999999999998865 68999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
.|..+.|+ ..++++++.|.+|.|||+.+.. +.+.+.+|...|+.+.|+. +++++++.|.+|++|++.++.+++
T Consensus 279 aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvR 354 (499)
T KOG0281|consen 279 AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVR 354 (499)
T ss_pred eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeeh
Confidence 99999998 5699999999999999997654 3466789999999999964 699999999999999999999999
Q ss_pred EeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296 299 TLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK 376 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 376 (513)
++.+|...|.|+.+ .++| ++|++|.+|++||+..+.++ .+.+|..-|.|+.|.. .++++|+.||+|+|||+..+.
T Consensus 355 tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 355 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-ceeeeccccceEEEEeccccc
Confidence 99999999999887 4555 48899999999999999887 6788989999999854 479999999999999998764
Q ss_pred eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
........- ...+...|.+.|..+.|. ...+++++.|.+|.|||+.++
T Consensus 432 dpra~~~~~----------------------------Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 432 DPRAPASTL----------------------------CLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred CCcccccch----------------------------HHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 322111000 001114566679999995 457899999999999999887
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.5e-32 Score=261.37 Aligned_cols=247 Identities=27% Similarity=0.500 Sum_probs=211.3
Q ss_pred chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
..+.+.+|...|++++|+|++.++++++.|++|+|||+ ..+..++++ .+|...|++++|+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-------------------~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-------------------KGHSTYVTSVAFS 255 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-------------------cCCCCceEEEEec
Confidence 66777899999999999999999999999999999999 444666644 7999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc--eeEEeecccCC-
Q 010296 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA--YISTLFGHQSE- 306 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~- 306 (513)
|+++++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+.|+|||+.++. ++..+..+...
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA 335 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998 56666666555
Q ss_pred -eEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCCee---EEEeecCCe-EEEEeCCCCEEEEecCCCCeeE
Q 010296 307 -VLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASSLE---CCCFISNDE-FLSGSDDGSIELWSLLRKKPVY 379 (513)
Q Consensus 307 -v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~---~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~ 379 (513)
++++.|+|++. +++++.|+.+++|++...... .+..|...+. ....++.+. +++|+.|+.|++|++.++..+.
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence 99999999885 558888999999999977655 5556655432 233455665 7799999999999999987777
Q ss_pred EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--CCCcEEEEEeC
Q 010296 380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--GNGSVRLWAIE 452 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~v~vwd~~ 452 (513)
.+..+. ...+..+.++|...++++++ .|+.|++|...
T Consensus 416 ~l~~h~------------------------------------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 RLEGHS------------------------------------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhcCCC------------------------------------CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 765431 33489999999999999998 78899999754
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-31 Score=220.92 Aligned_cols=287 Identities=17% Similarity=0.247 Sum_probs=231.5
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
.+.+..-.+.|++|.|+++|.+|++++.|.+++|||..+++.++++ ..+.-.|..+.|...
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-------------------~skkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-------------------NSKKYGVDLACFTHH 67 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-------------------ecccccccEEEEecC
Confidence 3455556889999999999999999999999999999999988865 445556888888777
Q ss_pred CCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296 232 GRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT 309 (513)
Q Consensus 232 ~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 309 (513)
.+.++.++. |.+|+..++.+.+.++.|.||...|++|+.+|-+..+++++.|++|++||++..++...+..... ..
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi 145 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PI 145 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cc
Confidence 777777765 88999999999999999999999999999999999999999999999999998888777653333 45
Q ss_pred EEeeCCCeEEEEeCC-CcEEEEecCCCee---eEEe---cCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296 310 IDCLRKERVLTVGRD-RSMQLWKVPEESR---LVFR---APASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 310 ~~~~~~~~~~~~~~d-~~i~iwd~~~~~~---~~~~---~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
++|.|.|.+++.+.. ..|++||++.-.. ..+. ........+.|+|+|+ ++.++..+.+++.|.-+|..+.++
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 678899977755554 4999999986421 2222 3356788999999997 678888999999999999988887
Q ss_pred ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL 461 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~ 461 (513)
....... .--...+|+|+++++++|+.||+|.+|++.++. .+..+
T Consensus 226 s~~~~~~----------------------------------~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~-~v~~~ 270 (311)
T KOG1446|consen 226 SGYPNAG----------------------------------NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK-KVAVL 270 (311)
T ss_pred eeccCCC----------------------------------CcceeEEECCCCcEEEEecCCCcEEEEEcCCCc-EeeEe
Confidence 6433210 013577899999999999999999999999983 33333
Q ss_pred eecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
.. ++.+++.++.|+|.-.+++++ +..+-+|-..
T Consensus 271 ~~-~~~~~~~~~~fnP~~~mf~sa---~s~l~fw~p~ 303 (311)
T KOG1446|consen 271 RG-PNGGPVSCVRFNPRYAMFVSA---SSNLVFWLPD 303 (311)
T ss_pred cC-CCCCCccccccCCceeeeeec---CceEEEEecc
Confidence 33 268899999999998877777 3478888544
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=218.75 Aligned_cols=245 Identities=17% Similarity=0.268 Sum_probs=210.3
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
.+..+.++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.+...|++|+.|..|.+||+.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee---EEecCCCCeeEEEeecCCeEEEEeCCCCEEEE
Q 010296 295 AYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL---VFRAPASSLECCCFISNDEFLSGSDDGSIELW 370 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iw 370 (513)
+.++.+.+|.+.|+.+.|+.... +++++.|.++++||.++.... .+......|.++.+.. ..+++|+.||+++.|
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTY 170 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCCcEEEE
Confidence 99999999999999999998765 558999999999999876543 3444556677776643 358899999999999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
|++.|....-.. ..+|++++|+++++..++++-|++|++.|
T Consensus 171 diR~G~l~sDy~---------------------------------------g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 171 DIRKGTLSSDYF---------------------------------------GHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred Eeecceeehhhc---------------------------------------CCcceeEEecCCCCEEEEeeccceeeecc
Confidence 999987544332 12399999999999999999999999999
Q ss_pred eCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
-.++ +.++..........-...+++.....+++| +.||.|.+||+..+.
T Consensus 212 k~tG-klL~sYkGhkn~eykldc~l~qsdthV~sg-SEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 212 KETG-KLLKSYKGHKNMEYKLDCCLNQSDTHVFSG-SEDGKVYFWDLVDET 260 (307)
T ss_pred cchh-HHHHHhcccccceeeeeeeecccceeEEec-cCCceEEEEEeccce
Confidence 9998 666666664445556677888777888887 999999999987654
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=227.95 Aligned_cols=308 Identities=17% Similarity=0.226 Sum_probs=238.3
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccc---cccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV---KYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
...+..|++++.+.+|+|||.++|||+.|-.|+|.|+...-.. ..+.+... .. .......+..|...|+++.|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~-qa---~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT-QA---RHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc-cc---CCceEeehhhccCcccceee
Confidence 3456789999999999999999999999999999998732111 10100000 00 01223467889999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe---ecc
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL---FGH 303 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~ 303 (513)
+|....|++|+.|++|+++|+......+.++ ....+|.++.|+|.|.+|+.|..-.++++||+.+.++.... ..|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999999987543332222 25678999999999999999999999999999998876543 358
Q ss_pred cCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEE--ecC-CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee
Q 010296 304 QSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVF--RAP-ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV 378 (513)
Q Consensus 304 ~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~--~~~-~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~ 378 (513)
.+.|+++.+++.+.+. +++.||.|++||--+++++.. ..| ...|.+..|..+++ +++.+.|..+++|.+.+++++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8899999999988655 899999999999988877632 233 45788889999997 668999999999999999999
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcc
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKD 457 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~ 457 (513)
......... +....-+...|+....+++.-. ..+.+.-||.++..+
T Consensus 341 ~~YtGAg~t--------------------------------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr- 387 (430)
T KOG0640|consen 341 KEYTGAGTT--------------------------------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR- 387 (430)
T ss_pred EEEecCCcc--------------------------------cchhhhhhhhhcCccceEEccccccCceeeccccchhh-
Confidence 988754321 1111134455666666766554 346899999988733
Q ss_pred eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
..+....|.+.+..+.-||.+.-++++ ++|.+.++|-..
T Consensus 388 -~~l~slgHn~a~R~i~HSP~~p~FmTc-sdD~raRFWyrr 426 (430)
T KOG0640|consen 388 -VALLSLGHNGAVRWIVHSPVEPAFMTC-SDDFRARFWYRR 426 (430)
T ss_pred -hhhcccCCCCCceEEEeCCCCCceeee-cccceeeeeeec
Confidence 445556799999999999999999999 999999999543
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-32 Score=219.70 Aligned_cols=280 Identities=19% Similarity=0.328 Sum_probs=222.9
Q ss_pred eEEEEECCC-CCeEEEEe-------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-C
Q 010296 162 VTAVALSED-DSKGFSAS-------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-G 232 (513)
Q Consensus 162 V~~~~~s~~-~~~l~t~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~ 232 (513)
=+++.|||- .++||++. ..|++.|-++.....+... ....-...+..++|+++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~-----------------~s~d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQEC-----------------QSYDTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEE-----------------EeeecccceeEeeecCCCc
Confidence 367899992 33344332 3688999998755444322 11234667999999995 4
Q ss_pred CEEEEEeCCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296 233 RYLASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 310 (513)
+.+++++.||++++||+. ...++..++.|...|.++.|++-. ..+++++.|++|++|+...++.+.++.+|...|+..
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA 153 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence 578888899999999964 345789999999999999998854 457788999999999999999999999999999999
Q ss_pred EeeCC--CeEEEEeCCCcEEEEecCCC-eeeEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCC-eeEEeecC
Q 010296 311 DCLRK--ERVLTVGRDRSMQLWKVPEE-SRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKK-PVYIVKNA 384 (513)
Q Consensus 311 ~~~~~--~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~-~~~~~~~~ 384 (513)
.|+|. +.+++++.|+++++||++.. +.+.+..|...+.|+.|+.-+ .+++|+.|+.|++||+++.+ |+..+
T Consensus 154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--- 230 (311)
T KOG0277|consen 154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--- 230 (311)
T ss_pred ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---
Confidence 99994 56779999999999999764 445688888999999998765 37899999999999998864 44444
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
.+|.-.|..+.|||.. .+||+++.|=++||||...+...+.....
T Consensus 231 ----------------------------------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 231 ----------------------------------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred ----------------------------------cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence 4455569999999965 68999999999999999866444444443
Q ss_pred cCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
|...|..+.||+-..-.++.+|.|..+.||+.
T Consensus 277 --HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 --HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --cceEEeccccccccCceeeecccccceeeecc
Confidence 88999999999876655555599999999973
No 66
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-30 Score=218.08 Aligned_cols=297 Identities=19% Similarity=0.314 Sum_probs=228.9
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
-...|+.|.|+|.+..|+++++||++++|++........ ..|..++.+++|.+ ...+++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 367899999999999999999999999999998755443 37899999999997 557899
Q ss_pred EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER 317 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 317 (513)
|+.||.|+++|+.++.... +..|..+|.||.+++-...+++|++|++|++||.+....+..+. ....|.++... +.+
T Consensus 71 G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~-g~~ 147 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS-GNR 147 (323)
T ss_pred eccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-CCE
Confidence 9999999999999887554 44599999999999988899999999999999999866665554 44478888764 568
Q ss_pred EEEEeCCCcEEEEecCCCeeeE---EecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC----CeeEEeecCCCccc
Q 010296 318 VLTVGRDRSMQLWKVPEESRLV---FRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK----KPVYIVKNAHPLLD 389 (513)
Q Consensus 318 ~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~ 389 (513)
|++|+.+..+.+||+++..... .......+.|+++.|++. +++++.+|.|.+=.+... +..+.++.+.....
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~ 227 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK 227 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence 8899999999999999866543 333456788999999765 999999999988655554 33334433221110
Q ss_pred CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccE
Q 010296 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGF 469 (513)
Q Consensus 390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 469 (513)
. .....+|++|+|+|-...||||+.||.|.+||+.+. +.+..+.. ....
T Consensus 228 ~----------------------------~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~--~~~S 276 (323)
T KOG1036|consen 228 D----------------------------TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAK--YETS 276 (323)
T ss_pred C----------------------------ceEEEEeceeEeccccceEEecCCCceEEEccCcch-hhhhhccC--CCCc
Confidence 0 122245999999999999999999999999999987 44444444 2567
Q ss_pred EEEEEeecCCCEEEEEecCCCcccccccCCCcccceEEEecc
Q 010296 470 VNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIK 511 (513)
Q Consensus 470 v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~ 511 (513)
|.+++|+-+|..||++++.--.-. +..+...+++.|+.|.
T Consensus 277 I~slsfs~dG~~LAia~sy~ye~~--~~~~~~~~~i~I~~l~ 316 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASSYQYERA--DTPTHERNAIFIRDLT 316 (323)
T ss_pred eEEEEeccCCCeEEEEechhhhcC--CCCCCCCCceEEEecc
Confidence 999999999999999965432111 1124456777777653
No 67
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-31 Score=243.69 Aligned_cols=283 Identities=23% Similarity=0.381 Sum_probs=236.6
Q ss_pred chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE-EEEc
Q 010296 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVS 229 (513)
Q Consensus 151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s 229 (513)
.-+.+.+|..-|..+++.+.. .++++|.||++++|+-.....+... .+.+|.+-|.+ ++|-
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSICYA 67 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccceec
Confidence 346788999999999987654 7999999999999998666544321 23456666666 7777
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 230 S-DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 230 ~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
+ ++-.|++|+.|.+|.+|.+.+..++.++++|...|.++....++. |++||+|.++++|-. +++...+.+|+..|+
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVW 144 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchhee
Confidence 5 455699999999999999999999999999999999999887776 999999999999986 556677999999999
Q ss_pred EEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296 309 TIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLL 388 (513)
Q Consensus 309 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 388 (513)
++...|.+.+++|+.|.+|++|.- .....++.+|...|..+++.+++.|++++.||.|++|++ ++.++...
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~------- 215 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEM------- 215 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeee-------
Confidence 999999999999999999999986 333447889999999999999999999999999999998 77777776
Q ss_pred cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc
Q 010296 389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
.+|...|.+++..+++..++++++|++++||+... ..+.+.. ...
T Consensus 216 ------------------------------~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e---~~q~I~l--Ptt 260 (745)
T KOG0301|consen 216 ------------------------------HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE---CVQVITL--PTT 260 (745)
T ss_pred ------------------------------eccceEEEEEEecCCCCeEEEecCCceEEEeecCc---eEEEEec--Ccc
Confidence 45556699999888889999999999999999863 3333332 244
Q ss_pred EEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
.|+++.+-++|. |++| +.||.||+|...+.
T Consensus 261 siWsa~~L~NgD-Ivvg-~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 261 SIWSAKVLLNGD-IVVG-GSDGRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeeCCC-EEEe-ccCceEEEEEeccc
Confidence 799999999887 5566 78999999987654
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-31 Score=244.10 Aligned_cols=334 Identities=18% Similarity=0.279 Sum_probs=259.0
Q ss_pred cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK 221 (513)
Q Consensus 142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (513)
++|+.......-++.+|..+|+++.|...|..|++||.|+.|.+||+-....... +.+|..
T Consensus 90 qif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r-------------------L~GHkd 150 (888)
T KOG0306|consen 90 QIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR-------------------LRGHKD 150 (888)
T ss_pred EeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE-------------------eecchH
Confidence 4566666677788999999999999999999999999999999999987776654 489999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC--------
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-------- 293 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 293 (513)
.|+.+-|....++|++.+.|+.|++||+.+..+..+.-.|.+.|+++++.+ +.+++++.|+.+++|++..
T Consensus 151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~ 228 (888)
T KOG0306|consen 151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN 228 (888)
T ss_pred HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc
Confidence 999999998889999999999999999999999999999999999999988 7799999999999998700
Q ss_pred ---------------------------Cc---------------------------------------------------
Q 010296 294 ---------------------------RA--------------------------------------------------- 295 (513)
Q Consensus 294 ---------------------------~~--------------------------------------------------- 295 (513)
.+
T Consensus 229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 00
Q ss_pred --------------------------e------------------------------eEEeecccCCeEEEEeeCCCeEE
Q 010296 296 --------------------------Y------------------------------ISTLFGHQSEVLTIDCLRKERVL 319 (513)
Q Consensus 296 --------------------------~------------------------------~~~~~~~~~~v~~~~~~~~~~~~ 319 (513)
. ...+.+|...|.+++++.+..++
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~ 388 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL 388 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence 0 00012466678888888888788
Q ss_pred EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCc
Q 010296 320 TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE 398 (513)
Q Consensus 320 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (513)
..+..+.|++|+..+.+++...... .+.+..|.|.+. +++|...|.+.+||+.+...+.++..+....-.+...+...
T Consensus 389 ~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 389 ASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred eecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 8888899999999988887554444 788889999886 77999999999999999888877774444333332222222
Q ss_pred CccccccCC-------------CCC----CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296 399 GKISNGHSE-------------NGN----LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL 461 (513)
Q Consensus 399 ~~i~~~~~~-------------~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~ 461 (513)
+.+...... ++. +....-....-...|.|+.+||||++||++--|++|+||-+.+. +....+
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsL 546 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSL 546 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeee
Confidence 222211111 010 00000011122345999999999999999999999999999987 333334
Q ss_pred eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
+ .|.-||.|+.+|||++++++| |.|..|++|.+.-+.
T Consensus 547 Y--GHkLPV~smDIS~DSklivTg-SADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 547 Y--GHKLPVLSMDISPDSKLIVTG-SADKNVKIWGLDFGD 583 (888)
T ss_pred c--ccccceeEEeccCCcCeEEec-cCCCceEEeccccch
Confidence 4 499999999999999999999 999999999877653
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=243.40 Aligned_cols=248 Identities=19% Similarity=0.391 Sum_probs=213.9
Q ss_pred CCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 010296 215 RATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 292 (513)
.+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.++++|.+|..+|..++|+++|..+++++.|+.|++||+.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence 4679999999999999 899999999999999999876 88999999999999999999999999999999999999999
Q ss_pred CCceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296 293 DRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIE 368 (513)
Q Consensus 293 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~ 368 (513)
+|+++..+. ....++|+.|+|++ .|++|+.|+.|+.||++++..+ .+..|-..|..+.|.++|. |++.+.|++++
T Consensus 289 TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~r 367 (503)
T KOG0282|consen 289 TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVR 367 (503)
T ss_pred cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEE
Confidence 999999886 55678999999976 6779999999999999999876 5667778999999999985 99999999999
Q ss_pred EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL 448 (513)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v 448 (513)
||+...+-++..+..... ....++..+|+++++++-+.|+.|.+
T Consensus 368 iWe~~~~v~ik~i~~~~~------------------------------------hsmP~~~~~P~~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 368 IWENRIPVPIKNIADPEM------------------------------------HTMPCLTLHPNGKWFAAQSMDNYIAI 411 (503)
T ss_pred EEEcCCCccchhhcchhh------------------------------------ccCcceecCCCCCeehhhccCceEEE
Confidence 999998877765543221 22789999999999999999999999
Q ss_pred EEeCCCCc--ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 449 WAIESETK--DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 449 wd~~~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
|.+....+ .-+.+......|.-..|.|||||.+|++| ..||.+.+||..+.
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG-dsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG-DSDGKVNFWDWKTT 464 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee-cCCccEEEeechhh
Confidence 99865421 11233333346777889999999999999 99999999997654
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=6.3e-31 Score=252.02 Aligned_cols=281 Identities=25% Similarity=0.396 Sum_probs=240.6
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
.|...|.|..|+ ..++++++.+++|++|+..++..+.. .+.+|.+.|++++|..-+.+|+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 367789999998 56899999999999999999887764 1479999999999998788999
Q ss_pred EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296 237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE 316 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 316 (513)
+|+.|.+++|||..+|+++..+.+|...|.++...+ .++++|+.|.+|++|++.++.++..+.+|..+|+++... .+
T Consensus 266 sgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~ 342 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EP 342 (537)
T ss_pred EEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CC
Confidence 999999999999999999999999999999998765 468889999999999999999999999999999999998 77
Q ss_pred eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCc
Q 010296 317 RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNF 394 (513)
Q Consensus 317 ~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 394 (513)
.+++++.|++|++|++.+.+++ .+.+|...|.++.+.+...+++|+.|++|++||+.++ +++.++..+..
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-------- 414 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-------- 414 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcc--------
Confidence 8899999999999999988887 6788999999998877667999999999999999999 88887754332
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA 474 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~ 474 (513)
.+..+.+ .+++|++++.||+|++||..++ ..++.+... +.+.|.+++
T Consensus 415 -----------------------------~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~-~~~~v~~l~ 461 (537)
T KOG0274|consen 415 -----------------------------LVSSLLL--RDNFLVSSSADGTIKLWDAEEG-ECLRTLEGR-HVGGVSALA 461 (537)
T ss_pred -----------------------------ccccccc--ccceeEeccccccEEEeecccC-ceeeeeccC-CcccEEEee
Confidence 2544444 4569999999999999999998 455555443 567888888
Q ss_pred eecCCCEEEEEecCCCcccccccCCCcccc
Q 010296 475 FAKSGQFLIAGVGQEPRLGRWGHLPAARNG 504 (513)
Q Consensus 475 ~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~ 504 (513)
+. ...++++ +.++++++||+..+....
T Consensus 462 ~~--~~~il~s-~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 462 LG--KEEILCS-SDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cC--cceEEEE-ecCCeeEEEecccCchhh
Confidence 76 3556666 899999999988775443
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=218.97 Aligned_cols=268 Identities=20% Similarity=0.260 Sum_probs=217.5
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
.++-.+..|.++|++++. ++.|+|+||.|-+|+|||+.....+..+ ..|.+.|+++.|.
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l-------------------l~HagsitaL~F~ 92 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL-------------------LSHAGSITALKFY 92 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce-------------------eccccceEEEEec
Confidence 345667899999999999 5799999999999999999988776644 6789999999999
Q ss_pred CCCC--EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296 230 SDGR--YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307 (513)
Q Consensus 230 ~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 307 (513)
+.-. .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-+|+....++ -....
T Consensus 93 ~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~a 171 (362)
T KOG0294|consen 93 PPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKA 171 (362)
T ss_pred CCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcc
Confidence 9765 89999999999999999999999999999999999999999999999999999999999988765554 23334
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296 308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPL 387 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (513)
..+.|+|.|..++.+....|-+|.+..............+.|+.|...+.+++|..++.|.+||.....+...+.
T Consensus 172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~----- 246 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL----- 246 (362)
T ss_pred eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeee-----
Confidence 559999998756555566799999887776655555567888889888899999999999999999988877773
Q ss_pred ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE--ecCCCEEEEecCCCcEEEEEeCCCCc-ceeeeeec
Q 010296 388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV--CGGSDLAASGAGNGSVRLWAIESETK-DIQPLYNL 464 (513)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~g~~dg~v~vwd~~~~~~-~~~~~~~~ 464 (513)
+|...|-.+.+ .|.+.+|+|+|.||.|+|||+....+ ....+..+
T Consensus 247 --------------------------------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~ 294 (362)
T KOG0294|consen 247 --------------------------------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL 294 (362)
T ss_pred --------------------------------cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe
Confidence 44455777774 46778999999999999999987522 22233333
Q ss_pred CcccEEEEEEee
Q 010296 465 PLVGFVNSLAFA 476 (513)
Q Consensus 465 ~~~~~v~~v~~s 476 (513)
.....++|+...
T Consensus 295 n~~~RltCl~~~ 306 (362)
T KOG0294|consen 295 NTNVRLTCLRVK 306 (362)
T ss_pred ecCCccceeeeh
Confidence 335556665543
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-29 Score=202.44 Aligned_cols=300 Identities=14% Similarity=0.146 Sum_probs=231.4
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
..+..|.+++|+|.|.+.++|+...+++|.....-..++.-. +. ..............|.+.|+|.+|+|+|.+|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h---ea-~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH---EA-AKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCccccc---cc-ccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 356789999999999999999999999998765332221100 00 00000011123467899999999999999999
Q ss_pred EEeCCCcEEEEeCCCcce-----eeeccCcCCCeEEEEEecC----CCeEEEEe-CCCcEEEEeCCCCceeEEeecccCC
Q 010296 237 SGGLDRHIHLWDTRIQEH-----IQAFPGHRGPVSCLTFRQG----TSELFSGS-FDRTVKIWNAEDRAYISTLFGHQSE 306 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 306 (513)
+|+.|.+|++.-++...+ -..|.-|.+.|..++|..+ +..|++++ .|..|++-|..+++....+.+|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 999999999987654332 2345669999999999643 45566554 4788999999999999999999999
Q ss_pred eEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEec--------CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296 307 VLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRA--------PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 307 v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~ 377 (513)
|.++---.+..+++++.|.+|++||++-+..+.... ..+.|..+++.|.|+ +++|-.|....+||++.+++
T Consensus 186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 998865556678899999999999999887763322 125688999999998 66888999999999999999
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC-c
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET-K 456 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~-~ 456 (513)
++.+.. |...|.|+.|||...||++++.|..|++-|+...- .
T Consensus 266 iq~f~p-------------------------------------hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 266 IQRFHP-------------------------------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred eeeeCC-------------------------------------CccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence 998843 44449999999999999999999999999997641 1
Q ss_pred ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 457 DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 457 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
.+..+....|...+..+.|+|..-.++++ +.|.++.+|-..
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d~sfiss-sadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQDFSFISS-SADKTATLWALN 349 (350)
T ss_pred cCceEEEEeccCceEEEEecCccceeeec-cCcceEEEeccC
Confidence 22222333478888889999998777777 899999999653
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-30 Score=237.05 Aligned_cols=251 Identities=28% Similarity=0.465 Sum_probs=216.6
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (513)
|+.........+..|...|.++.|+|++++|++++.+|.|++|++.++.....+ ..|...|
T Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-------------------~~~~~~i 96 (289)
T cd00200 36 WDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-------------------TGHTSYV 96 (289)
T ss_pred EEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-------------------eccCCcE
Confidence 444444456677889999999999999999999999999999999987555433 4677789
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH 303 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 303 (513)
.++.|+|++.++++++.++.|.+|++.+++.+..+..|...|.+++|+|++.++++++.++.|++||+++++.+..+..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 97 SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 99999999889998888999999999989988889899999999999999888888888999999999999888888889
Q ss_pred cCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCeeEE
Q 010296 304 QSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR-APASSLECCCFISNDEFL-SGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 304 ~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~~~~ 380 (513)
...+.++.|+|++ .+++++.++.|++|++......... .+...+.++.|++++.++ +++.+|.|++|++.+++++..
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence 8899999999988 6778888999999999987666444 777799999999987655 555599999999998887777
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
+.. +...|.+++|+|++++|++++.||.|++|+
T Consensus 257 ~~~-------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 LSG-------------------------------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccc-------------------------------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 652 223399999999999999999999999996
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-30 Score=230.02 Aligned_cols=239 Identities=18% Similarity=0.314 Sum_probs=197.8
Q ss_pred hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
.+|...|.+++.++||+|||+|+.|..|.||+..+.+.++.+ .+|.+.|.+++|-.....|
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-------------------~ghr~~V~~L~fr~gt~~l 259 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-------------------KGHRGAVSSLAFRKGTSEL 259 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-------------------cccccceeeeeeecCccce
Confidence 489999999999999999999999999999999999887754 7999999999999888899
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
++++.|+.|++|++.....+.++.+|...|.+|....-++.+-+|+.|+++++|++.. .....+.++.+.+-|++|..+
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~ 338 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND 338 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc
Confidence 9999999999999999999999999999999999888777777888999999999944 334456788999999999999
Q ss_pred CeEEEEeCCCcEEEEecCCCeeeEEe--cC-----------CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe-eEE
Q 010296 316 ERVLTVGRDRSMQLWKVPEESRLVFR--AP-----------ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP-VYI 380 (513)
Q Consensus 316 ~~~~~~~~d~~i~iwd~~~~~~~~~~--~~-----------~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~-~~~ 380 (513)
..|++|+.+|.|.+|++...+++... .| ...|++++..|... +++|+.+|.|++|-+..+-. +..
T Consensus 339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 99999999999999999888776321 11 12678888888875 77999999999999987722 111
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEE
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLW 449 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vw 449 (513)
+.. ....+.|++|+|+++|++|++|. ....+-=|
T Consensus 419 l~~-----------------------------------ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 419 LYS-----------------------------------LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred eee-----------------------------------cccccEEEEEEEccCCCEEEEeccccccccee
Confidence 110 22335599999999999776663 33333333
No 75
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-31 Score=241.56 Aligned_cols=244 Identities=19% Similarity=0.327 Sum_probs=221.1
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
+..+...|.++.|+|...+++++-.+|.|.||+.++...+..+.-..-+|.+..|-+-.+.+++|+.|..|+||+..+++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 34578899999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEE
Q 010296 296 YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISND--EFLSGSDDGSIELW 370 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iw 370 (513)
.+..+..|..-|++++.+|.. .+++++.|-+|++|+....- ...+.+|...|++++|.|.. .|++++-|++|+||
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 999999999999999999965 77799999999999998754 34889999999999999976 49999999999999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC--CEEEEecCCCcEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS--DLAASGAGNGSVRL 448 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~g~~dg~v~v 448 (513)
.+.+..+..++..+ ...|+|+.+-+.| .+|++|+.|.+|+|
T Consensus 169 slgs~~~nfTl~gH-------------------------------------ekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 169 SLGSPHPNFTLEGH-------------------------------------EKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred EcCCCCCceeeecc-------------------------------------ccCcceEEeccCCCcceEEecCCCceEEE
Confidence 99999999998633 3349999998855 69999999999999
Q ss_pred EEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 449 WAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 449 wd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
||..+. ..++++.. |...|..+.|+|.-+.+++| +.||+|+||+..+-
T Consensus 212 WDyQtk-~CV~TLeG--Ht~Nvs~v~fhp~lpiiisg-sEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 212 WDYQTK-SCVQTLEG--HTNNVSFVFFHPELPIIISG-SEDGTVRIWNSKTY 259 (794)
T ss_pred eecchH-HHHHHhhc--ccccceEEEecCCCcEEEEe-cCCccEEEecCcce
Confidence 999997 66777776 88889999999999999999 99999999976553
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=7.7e-31 Score=254.33 Aligned_cols=299 Identities=19% Similarity=0.241 Sum_probs=232.6
Q ss_pred hhccCCCeEEEEECCCCCeEEEEe--CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 155 LLKHRQSVTAVALSEDDSKGFSAS--KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 155 ~~~h~~~V~~~~~s~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
+..+...|.+|..+|+|..++||| .|+.++||+...--.....+ .............|.+.|+|+.|+|||
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~-------~~~l~k~l~~m~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK-------NENLPKHLCTMDDHDGSVNCVRFSPDG 81 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhh-------hcccchhheeeccccCceeEEEECCCC
Confidence 345577899999999999999999 89999999976322111100 001233444567899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC------------------cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 233 RYLASGGLDRHIHLWDTRI------------------QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
.+||+|+.|+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.||+..+.
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence 9999999999999998662 1356788899999999999999999999999999999999999
Q ss_pred ceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeE-Ee------cCCCCeeEEEeecCCeEE-EE----
Q 010296 295 AYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLV-FR------APASSLECCCFISNDEFL-SG---- 361 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~-~~------~~~~~v~~~~~~~~~~~~-~~---- 361 (513)
+.+..+.+|.+.|..+.|.|-|+++ +-+.|++|++|.+..-.... .. .....+..+.|+|+|.++ +.
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999999999999999999988655 78899999999976644332 11 223457789999999754 32
Q ss_pred eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-----CC-
Q 010296 362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-----SD- 435 (513)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~- 435 (513)
+.-.++.|.+..+.+.-..+ .+|..++.++.|+|. .+
T Consensus 242 ~~~~~~~IieR~tWk~~~~L-------------------------------------vGH~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDL-------------------------------------VGHSAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred CCcceeEEEecCCceeeeee-------------------------------------ecCCCceEEEEeChHHhcccccc
Confidence 22345677776665555444 556666999999871 11
Q ss_pred -----------EEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 436 -----------LAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 436 -----------~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
.+|+|+.|++|-||..... +++.....+ ....|..++|+|||-.|+++ +.||+|.+..+...
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~l-f~~SI~DmsWspdG~~Lfac-S~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNL-FNKSIVDMSWSPDGFSLFAC-SLDGTVALIHFEEK 357 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCC-Cchhhhhhh-hcCceeeeeEcCCCCeEEEE-ecCCeEEEEEcchH
Confidence 6889999999999999665 343333332 36779999999999999999 99999999977543
No 77
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4e-31 Score=229.16 Aligned_cols=252 Identities=19% Similarity=0.331 Sum_probs=205.4
Q ss_pred CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296 146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA 225 (513)
Q Consensus 146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (513)
....+..+++.+|..+|..|.||||.++|++|+.+..+.+||+.++.....+ ..+|...+.+
T Consensus 256 d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y------------------~~~~~~S~~s 317 (519)
T KOG0293|consen 256 DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY------------------PSGLGFSVSS 317 (519)
T ss_pred CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc------------------ccCcCCCcce
Confidence 3336668899999999999999999999999999999999999999987755 2345688999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc
Q 010296 226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ 304 (513)
Q Consensus 226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 304 (513)
++|.|||..+++|+.|++|..||+. |.......+ ....|.++++++||+++++.+.|..|++++..+......+. ..
T Consensus 318 c~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~ 395 (519)
T KOG0293|consen 318 CAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EE 395 (519)
T ss_pred eEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-cc
Confidence 9999999999999999999999986 444555554 23569999999999999999999999999998766554433 56
Q ss_pred CCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCC--eeEEEeecCC--eEEEEeCCCCEEEEecCCCCee
Q 010296 305 SEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASS--LECCCFISND--EFLSGSDDGSIELWSLLRKKPV 378 (513)
Q Consensus 305 ~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~--v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~ 378 (513)
.+|++++.+.+++++ +.-.+..+++||+.....+ .+.+|... +..-||-..+ .+++|+.|+.|+||+..+++++
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 789999999999877 5557999999999966554 45555543 2233443322 3779999999999999999999
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCC
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~ 454 (513)
..+. +|...|++++|+|.. .+||+++.||+||||-....
T Consensus 476 ~~Ls-------------------------------------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 476 AVLS-------------------------------------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred Eeec-------------------------------------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9984 455569999999954 68999999999999987643
No 78
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=2.4e-29 Score=241.06 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=208.8
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCC-CCCCCCCCCCcccEEEEEEcC-CCCEE
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGA-KDPQGRATKQSKHILALAVSS-DGRYL 235 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l 235 (513)
|-..|....+++++..+++++.+.....|+...+..+..+ ...+. ......+.+|...|++++|+| ++.+|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~-------~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH-------TDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeec-------cccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456777778888888899999999999987765432211 00000 011123578999999999999 88999
Q ss_pred EEEeCCCcEEEEeCCCc-------ceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296 236 ASGGLDRHIHLWDTRIQ-------EHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 307 (513)
++|+.|++|++||+.++ .++..+.+|...|.+++|+|++ ++|++++.|++|+|||+.+++.+..+.+|...|
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 99999999999999765 3567788999999999999985 689999999999999999999999999999999
Q ss_pred EEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-EEecCCCC-eeEEEeecCC-eEEEEe----CCCCEEEEecCCCC-ee
Q 010296 308 LTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-VFRAPASS-LECCCFISND-EFLSGS----DDGSIELWSLLRKK-PV 378 (513)
Q Consensus 308 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~-v~~~~~~~~~-~~~~~~----~dg~i~iwd~~~~~-~~ 378 (513)
.+++|+|++. +++++.|+.|++||++++..+ .+..|... +..+.|.+++ .+++++ .|+.|++||+++.. ++
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999885 558889999999999988765 44555543 3456777765 455443 47999999998754 33
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcc
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKD 457 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~ 457 (513)
....... ...+....|++++++|++|+ .||.|++|++.++. .
T Consensus 252 ~~~~~d~------------------------------------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~ 294 (493)
T PTZ00421 252 STVDLDQ------------------------------------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-L 294 (493)
T ss_pred eEeccCC------------------------------------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-e
Confidence 3222111 11266678999999999887 59999999999872 2
Q ss_pred eeeeeecCcccEEEEEEeecCC
Q 010296 458 IQPLYNLPLVGFVNSLAFAKSG 479 (513)
Q Consensus 458 ~~~~~~~~~~~~v~~v~~sp~~ 479 (513)
+. ...+....++..++|.|.-
T Consensus 295 ~~-~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 295 TF-CSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EE-EeeccCCCCCcceEecccc
Confidence 22 2333355678888888853
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=237.88 Aligned_cols=254 Identities=24% Similarity=0.333 Sum_probs=220.9
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCC-Ccc
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATK-QSK 221 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 221 (513)
+|+...........-+...|+++.|+++|.+|++|..+|.|.|||....+.+..+ .. |..
T Consensus 201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------~~~h~~ 261 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------RGSHAS 261 (484)
T ss_pred EEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-------------------cCCcCc
Confidence 3555444433333344899999999999999999999999999999988877654 44 899
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee-ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
.|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..++|++++.+|++|+.|+.+.|||.....++..+
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~ 339 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF 339 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence 99999998 77899999999999999998876555 8889999999999999999999999999999999888889999
Q ss_pred ecccCCeEEEEeeC--CCeEEEEe--CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE--EEeCCCCEEEEecC
Q 010296 301 FGHQSEVLTIDCLR--KERVLTVG--RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL--SGSDDGSIELWSLL 373 (513)
Q Consensus 301 ~~~~~~v~~~~~~~--~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~--~~~~dg~i~iwd~~ 373 (513)
..|...|.+++|+| .+.|++|+ .|+.|++||..++..+........|..+.|++... |+ .|..++.|.||++.
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 99999999999999 45677655 69999999999999998888889999999999874 55 45678899999999
Q ss_pred CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296 374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~ 453 (513)
+.+.+..+ .+|...|..++++|+|..+++|+.|.++++|++-.
T Consensus 420 s~~~~~~l-------------------------------------~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 420 SMKLVAEL-------------------------------------LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccceeeee-------------------------------------cCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 98887777 55666699999999999999999999999999976
Q ss_pred C
Q 010296 454 E 454 (513)
Q Consensus 454 ~ 454 (513)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-30 Score=226.48 Aligned_cols=253 Identities=19% Similarity=0.303 Sum_probs=214.9
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (513)
+........+.+......|+++.|..||++||+|...|.|+|||+.+...+.. +..|..+|
T Consensus 53 y~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~-------------------~~ah~apv 113 (487)
T KOG0310|consen 53 YSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ-------------------LYAHQAPV 113 (487)
T ss_pred EecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH-------------------HhhccCce
Confidence 34444555666777889999999999999999999999999999776555543 37899999
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCC-ceeEEe
Q 010296 224 LALAVSSD-GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDR-AYISTL 300 (513)
Q Consensus 224 ~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~ 300 (513)
..+.|+|+ +..|++|+.|+.+++||+.+......+.+|+..|.|.+|+|... .++||+.||.|++||++.. ..+..+
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 99999995 55778899999999999999988778999999999999999654 6889999999999999987 556666
Q ss_pred ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCe
Q 010296 301 FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~ 377 (513)
. |..+|-.+.+.|.|.+++......|++||+.++... ....|...|+|+.+..++. |++++-|+.|++||+.+.+.
T Consensus 194 n-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 194 N-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred c-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 5 999999999999988887777889999999965544 3344899999999998875 99999999999999999888
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
+..+....+ |.+++.+|+++.++.|..+|.+.+-+....
T Consensus 273 v~s~~~~~p--------------------------------------vLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 273 VHSWKYPGP--------------------------------------VLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred EEeeecccc--------------------------------------eeeEEecCCCceEEEecccceeeeehhhcc
Confidence 888765433 999999999999999999998887754443
No 81
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.9e-29 Score=258.68 Aligned_cols=250 Identities=19% Similarity=0.315 Sum_probs=205.9
Q ss_pred cCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEE
Q 010296 158 HRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYL 235 (513)
Q Consensus 158 h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 235 (513)
+...|.+++|+| .+.+|++++.||+|+|||+.++..+..+ .+|...|++++|+| ++.+|
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-------------------~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-------------------KEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------------------cCCCCCEEEEEEcCCCCCEE
Confidence 456899999987 4789999999999999999988766543 67999999999997 78999
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEe-cCCCeEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEEEEee
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLTIDCL 313 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~ 313 (513)
++|+.||+|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.||.|++||+++.. .+..+.+|...|.++.|.
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred EEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe
Confidence 99999999999999999988888754 689999995 568999999999999999998765 466778899999999998
Q ss_pred CCCeEEEEeCCCcEEEEecCCC-------eeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296 314 RKERVLTVGRDRSMQLWKVPEE-------SRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH 385 (513)
Q Consensus 314 ~~~~~~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (513)
+...+++++.|++|++||+... ....+.+|...+.+++|++++. |++|+.|+.|++|+.....++..+....
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~ 750 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT 750 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence 7778889999999999999743 2235677888899999999875 7799999999999988776665543221
Q ss_pred CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
..... ......+...|.+++|+|++.+|++|+.+|.|+||++
T Consensus 751 ~~~~~------------------------~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 751 IDPVS------------------------GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCccc------------------------ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 11000 0000233456999999999999999999999999996
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-29 Score=233.03 Aligned_cols=276 Identities=21% Similarity=0.308 Sum_probs=228.3
Q ss_pred EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 010296 163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDR 242 (513)
Q Consensus 163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 242 (513)
+-+.|+ ..+.||+|. ...|++|+..++...... ..+...|+++.|+++|.+|++|..+|
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~-------------------~~~~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELC-------------------SFGEELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeE-------------------ecCCCceEEEEECCCCCEEEEeecCC
Confidence 345677 345666665 457999999988854422 22377899999999999999999999
Q ss_pred cEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeCCC-eEE
Q 010296 243 HIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLRKE-RVL 319 (513)
Q Consensus 243 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~ 319 (513)
.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..+.|++++ .++
T Consensus 240 ~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lA 317 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLA 317 (484)
T ss_pred eEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeec
Confidence 999999999999999998 99999999998 56789999999999999998776554 88899999999999998 555
Q ss_pred EEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCC--eEEEE--eCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296 320 TVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISND--EFLSG--SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF 394 (513)
Q Consensus 320 ~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~--~~~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
+++.|+.+.|||...... ..+..|...|..++|+|-. .||+| +.|++|++||..+++.+..+.....
T Consensus 318 SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ-------- 389 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ-------- 389 (484)
T ss_pred cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc--------
Confidence 899999999999955444 4788999999999999964 47754 4799999999999998887754333
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe--cCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG--AGNGSVRLWAIESETKDIQPLYNLPLVGFVNS 472 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g--~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 472 (513)
|++|.|++..+-|+++ ..++.|.||++.+. +.+..+.. |...|..
T Consensus 390 ------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g--H~~RVl~ 436 (484)
T KOG0305|consen 390 ------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLG--HTSRVLY 436 (484)
T ss_pred ------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecC--CcceeEE
Confidence 9999999998766664 35678999999986 44444444 8999999
Q ss_pred EEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296 473 LAFAKSGQFLIAGVGQEPRLGRWGHLPAARN 503 (513)
Q Consensus 473 v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~ 503 (513)
+++||||..+++| +.|.++++|++-...+.
T Consensus 437 la~SPdg~~i~t~-a~DETlrfw~~f~~~~~ 466 (484)
T KOG0305|consen 437 LALSPDGETIVTG-AADETLRFWNLFDERPK 466 (484)
T ss_pred EEECCCCCEEEEe-cccCcEEeccccCCCCc
Confidence 9999999999999 78889999998775433
No 83
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=9.7e-29 Score=237.73 Aligned_cols=247 Identities=17% Similarity=0.199 Sum_probs=189.7
Q ss_pred EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCcc--
Q 010296 177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLASGGLDRHIHLWDTRIQE-- 253 (513)
Q Consensus 177 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~-- 253 (513)
|+.++.|++|+......+. .+.+|...|.+++|+|+ +.+|++|+.|++|+||++.++.
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 5567888888876544333 34789999999999996 7899999999999999997642
Q ss_pred ------eeeeccCcCCCeEEEEEecCCCeE-EEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCC
Q 010296 254 ------HIQAFPGHRGPVSCLTFRQGTSEL-FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDR 325 (513)
Q Consensus 254 ------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~ 325 (513)
++..+.+|...|.+++|+|++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+++|.++ +++.|+
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC
Confidence 344678899999999999998764 689999999999999998777775 66789999999998666 567899
Q ss_pred cEEEEecCCCeee-EEecCCCCeeEE-----EeecCC-eEEEEeCCC----CEEEEecCC-CCeeEEeecCCCcccCCCC
Q 010296 326 SMQLWKVPEESRL-VFRAPASSLECC-----CFISND-EFLSGSDDG----SIELWSLLR-KKPVYIVKNAHPLLDGLKN 393 (513)
Q Consensus 326 ~i~iwd~~~~~~~-~~~~~~~~v~~~-----~~~~~~-~~~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 393 (513)
.|++||++++..+ .+..|...+.+. .|++++ .+++++.++ .|+|||++. .+++..+....
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-------- 261 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-------- 261 (568)
T ss_pred EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC--------
Confidence 9999999988766 456676654332 234555 477777664 799999995 56666553221
Q ss_pred cccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEE
Q 010296 394 FEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSL 473 (513)
Q Consensus 394 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v 473 (513)
+.+.+......++|.++++|+.|+.|++|++..+ .+..+..+.+..++.++
T Consensus 262 ---------------------------~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~--~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 262 ---------------------------ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG--SIRKVNEYKSCSPFRSF 312 (568)
T ss_pred ---------------------------CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC--cEEeecccccCCCccce
Confidence 1122444455667899999999999999999876 35556666677889999
Q ss_pred EeecCCC
Q 010296 474 AFAKSGQ 480 (513)
Q Consensus 474 ~~sp~~~ 480 (513)
+|.|...
T Consensus 313 ~f~Pkr~ 319 (568)
T PTZ00420 313 GFLPKQI 319 (568)
T ss_pred EEccccc
Confidence 9999744
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.1e-30 Score=219.28 Aligned_cols=250 Identities=21% Similarity=0.374 Sum_probs=209.9
Q ss_pred cccchhhhhccCCCeEEEEECCCC---CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296 148 ATDEFRVLLKHRQSVTAVALSEDD---SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL 224 (513)
Q Consensus 148 ~~~~~~~~~~h~~~V~~~~~s~~~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (513)
.++...++.+|.++|.+++|.-.. ..|++++.|.++++|.++.+...... .....+|...|-
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~---------------~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA---------------LKVCRGHKRSVD 197 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH---------------HhHhccccccee
Confidence 456778889999999988885433 35999999999999999887654322 112349999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------------cceeeeccCcCCCeEEEEEecCCCeEEE
Q 010296 225 ALAVSSDGRYLASGGLDRHIHLWDTRI-------------------------QEHIQAFPGHRGPVSCLTFRQGTSELFS 279 (513)
Q Consensus 225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 279 (513)
++...++|..+++|+.|..|.||+..+ +.++..+.+|..+|.++.|++ ...+++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS 276 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS 276 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence 999999999999999999999999321 234667889999999999998 678999
Q ss_pred EeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCee----eEEecCCCCeeEEEeec
Q 010296 280 GSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESR----LVFRAPASSLECCCFIS 354 (513)
Q Consensus 280 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~ 354 (513)
++.|.+|+.||+.++..+..+. ....++++.++|...+ ++++.|..|++||.+++.- ..+.+|...|.++.|+|
T Consensus 277 ~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred ecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 9999999999999999988876 5667899999997655 5888999999999987642 36889999999999999
Q ss_pred CC--eEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296 355 ND--EFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC 431 (513)
Q Consensus 355 ~~--~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 431 (513)
.. +|++|+.|+++++||+++.+ +++.+. +|...|.++.|.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~-------------------------------------~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-------------------------------------GHNDKVLSVDWN 398 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCcceeec-------------------------------------cCCceEEEEecc
Confidence 87 38899999999999999987 888884 444559999997
Q ss_pred cCCCEEEEecCCCcEEEEEeC
Q 010296 432 GGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 432 ~~~~~l~~g~~dg~v~vwd~~ 452 (513)
. +.+|++|+.|.+|+|+.-.
T Consensus 399 ~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 E-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred C-CceEEeccCcceEEEeccc
Confidence 4 5699999999999998754
No 85
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1e-28 Score=207.45 Aligned_cols=300 Identities=17% Similarity=0.244 Sum_probs=217.6
Q ss_pred chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230 (513)
Q Consensus 151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 230 (513)
.+..|++|.+.|++++|+.||++|+|++.|++|+||++........ ..++ ..-..+..+.+.|+|
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~R----------~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-----RCIR----------QNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-----hHhh----------ccccCCCceEEEECC
Confidence 3567899999999999999999999999999999999987443211 0011 111223478899999
Q ss_pred CCCEEEE-EeCCCcEEEEeCCCc---ceee---------eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296 231 DGRYLAS-GGLDRHIHLWDTRIQ---EHIQ---------AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI 297 (513)
Q Consensus 231 ~~~~l~s-~~~dg~i~vwd~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 297 (513)
|.+-++. +-...++++|.+... .... .-+.|.-.|..+-...++.+|++++.|..|.+|+++ |+.+
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 9876554 445568999976422 1111 112366677778888889999999999999999998 8888
Q ss_pred EEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCC---C------eeeEEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296 298 STLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPE---E------SRLVFRAPASSLECCCFISNDE-FLSGSDDGS 366 (513)
Q Consensus 298 ~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~---~------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~ 366 (513)
..+......-+..+.+|+|+|+ +++..--|++|.+-- + +...+.+|.+.|..++|+++.. +++.+.||+
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 8887777777888999999888 677788999998732 1 1236789999999999999985 999999999
Q ss_pred EEEEecCCC----CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296 367 IELWSLLRK----KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG 442 (513)
Q Consensus 367 i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~ 442 (513)
++|||+.-. +-.+.++.... ......+....+.+||.|+.||.+..
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~------------------------------pl~aag~~p~RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSA------------------------------PLHAAGSEPVRLELSPSGDSLAVSFG 351 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCc------------------------------chhhcCCCceEEEeCCCCcEEEeecC
Confidence 999997531 11111111000 00111122448999999999988765
Q ss_pred CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
. .|++|..+++ +....+.. .|.+.|.+++|+++|++++++ | |..+++....++-
T Consensus 352 s-~l~~~~se~g-~~~~~~e~-~h~~~Is~is~~~~g~~~atc-G-dr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 352 S-DLKVFASEDG-KDYPELED-IHSTTISSISYSSDGKYIATC-G-DRYVRVIRNTPGW 405 (420)
T ss_pred C-ceEEEEcccC-ccchhHHH-hhcCceeeEEecCCCcEEeee-c-ceeeeeecCCCch
Confidence 4 7999999887 33333332 388999999999999999998 4 4467777655553
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=241.22 Aligned_cols=251 Identities=24% Similarity=0.430 Sum_probs=219.1
Q ss_pred cccCCCcccchhh-hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCc
Q 010296 142 RVQKPEATDEFRV-LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQS 220 (513)
Q Consensus 142 ~~~~~~~~~~~~~-~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (513)
.+|+......+.. +.+|.+.|.+++|...+.+|++|+.|.+++|||+.++.+...+ .+|.
T Consensus 231 ~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-------------------~gh~ 291 (537)
T KOG0274|consen 231 HLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-------------------QGHT 291 (537)
T ss_pred EEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-------------------cCCC
Confidence 4566677777777 9999999999999988899999999999999999999999866 6899
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296 221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
..|.++... ..++++|+.|.+|++|++.++..+..+.+|.++|.++.++ +.++++|+.|++|++|++.+++++..+
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee
Confidence 999999886 4578889999999999999999999999999999999998 789999999999999999999999999
Q ss_pred ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCC-eee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCee
Q 010296 301 FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEE-SRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPV 378 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~ 378 (513)
.+|...|+++.+.+...+++++.|++|++||+.+. +++ .+..|...+..+.+ .+..+++++.|++|++||..+++++
T Consensus 368 ~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~-~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL-RDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc-ccceeEeccccccEEEeecccCcee
Confidence 99999999998876688899999999999999998 555 56666666644443 2345889999999999999999999
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.++... +...|+.+++. ...+++++.+|.+++||++++
T Consensus 447 ~~~~~~------------------------------------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 447 RTLEGR------------------------------------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred eeeccC------------------------------------CcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 998753 22337777776 458999999999999999998
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=207.17 Aligned_cols=276 Identities=18% Similarity=0.295 Sum_probs=216.3
Q ss_pred EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc
Q 010296 174 GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE 253 (513)
Q Consensus 174 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 253 (513)
|++|+....|.-+++.-.. ... .-.....-.|...+..|..+|++++.+ +.++|+|+.|-+|+|||+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~-~~~------~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEP-KGC------TDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCc-ccc------ccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 5677777766666654322 000 000000112344678899999999997 8999999999999999999999
Q ss_pred eeeeccCcCCCeEEEEEecCCC--eEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEE
Q 010296 254 HIQAFPGHRGPVSCLTFRQGTS--ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLW 330 (513)
Q Consensus 254 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iw 330 (513)
.+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+...-.++..+++|.+.|+.++++|.++++ +.+.|+.+++|
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 9999999999999999998765 89999999999999999999999999999999999999999887 99999999999
Q ss_pred ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCC
Q 010296 331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG 409 (513)
Q Consensus 331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 409 (513)
|+-.++.-...........+.|+|.|. |+.+.. ..|-||.+.+.+....+....
T Consensus 155 NLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~~------------------------ 209 (362)
T KOG0294|consen 155 NLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIENPK------------------------ 209 (362)
T ss_pred hhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhhccc------------------------
Confidence 998887665444445555699999996 655554 458999988877665554321
Q ss_pred CCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEe--ecCCCEEEEEec
Q 010296 410 NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAF--AKSGQFLIAGVG 487 (513)
Q Consensus 410 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~--sp~~~~l~~~~~ 487 (513)
.+.|+.|- ++..|++|+.|+.|.+||..+. .++..+.. |...|.++.+ .|.+.+|+++ +
T Consensus 210 --------------r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~A--H~~RVK~i~~~~~~~~~~lvTa-S 270 (362)
T KOG0294|consen 210 --------------RILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLA--HENRVKDIASYTNPEHEYLVTA-S 270 (362)
T ss_pred --------------cceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeec--chhheeeeEEEecCCceEEEEe-c
Confidence 15566664 4568999999999999999885 44444433 8899999985 3667888888 9
Q ss_pred CCCcccccccCCCcc
Q 010296 488 QEPRLGRWGHLPAAR 502 (513)
Q Consensus 488 ~dg~v~~W~~~~~~~ 502 (513)
.||.|++||+....+
T Consensus 271 SDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 271 SDGFIKVWDIDMETK 285 (362)
T ss_pred cCceEEEEEcccccc
Confidence 999999999987743
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.7e-28 Score=202.09 Aligned_cols=253 Identities=16% Similarity=0.248 Sum_probs=207.1
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC--CCcEEEEeCCCC
Q 010296 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF--DRTVKIWNAEDR 294 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~ 294 (513)
......|.+|.|+++|.+|++++.|.+|+|||..+++.+.++..+...|..++|......++.++. |.+|+..++.+.
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 335677999999999999999999999999999999999999988889999999887777777766 889999999999
Q ss_pred ceeEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296 295 AYISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~ 372 (513)
+.++.+.||...|++++.+|- ..+++++.|++|++||++...+...... ..-..++|.|.|. ||++.....|++||+
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 999999999999999999994 5888999999999999997766543322 2334578999997 556666669999999
Q ss_pred CCC--CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 373 LRK--KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 373 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
+.- .|..++.... ......+.|.|||+|++|+.+...+.+++.|
T Consensus 170 Rs~dkgPF~tf~i~~----------------------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITD----------------------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred cccCCCCceeEccCC----------------------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 864 4555554321 1122389999999999999999999999999
Q ss_pred eCCCCcceeeeeecCccc-EEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296 451 IESETKDIQPLYNLPLVG-FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL 506 (513)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~ 506 (513)
.-++ .....+...+..+ .-....|+||++++++| ++||+|.+|++..+.+...+
T Consensus 216 Af~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g-s~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 216 AFDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSG-SDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ccCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEe-cCCCcEEEEEcCCCcEeeEe
Confidence 9998 3455555544333 22567899999999999 99999999999887765544
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-29 Score=204.75 Aligned_cols=240 Identities=19% Similarity=0.309 Sum_probs=197.5
Q ss_pred cCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEE
Q 010296 158 HRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYL 235 (513)
Q Consensus 158 h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 235 (513)
-.+.++.++|+++ .+.+++++.||+++|||+.... .|...+..|...|.++.|++ .+..+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ 120 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS------------------KPIHKFKEHKREVYSVDWNTVRRRIF 120 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCC------------------cchhHHHhhhhheEEeccccccceeE
Confidence 4678999999996 4577799999999999954322 13335678999999999999 56678
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR 314 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 314 (513)
++++.|++|++|+....+.++++.+|...|...+|+|. .+.+++++.|+++++||++..-....+..|...+.++.|+.
T Consensus 121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK 200 (311)
T ss_pred EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence 88899999999999999999999999999999999995 56788999999999999987544445888999999999987
Q ss_pred C--CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296 315 K--ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL 388 (513)
Q Consensus 315 ~--~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 388 (513)
- ..+++++.|+.|+.||++.-+.. .+.+|.-.|..+.|+|... |++++.|-+++|||...+.......
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~------ 274 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV------ 274 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh------
Confidence 3 35669999999999999876543 5678888999999999864 7899999999999987554332222
Q ss_pred cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEe
Q 010296 389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~ 451 (513)
..|...+..+.||+ ++.++|+++.|+.++||+-
T Consensus 275 ------------------------------~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 ------------------------------DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ------------------------------hccceEEeccccccccCceeeecccccceeeecc
Confidence 22334488899987 5579999999999999983
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2e-28 Score=200.77 Aligned_cols=234 Identities=19% Similarity=0.303 Sum_probs=204.0
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
+.+|..+++.|.|+.+|.+|++|+.|.++.||-..+|+.+.++.+|.+.|+|+..+.+.++|++|+.|.++++||+.+|+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 56899999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred eeEEeecccCCeEEEEeeCCCeEEEEeC------CCcEEEEecCCC-------e-eeEEecCCCCeeEEEeecCCe-EEE
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVLTVGR------DRSMQLWKVPEE-------S-RLVFRAPASSLECCCFISNDE-FLS 360 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------d~~i~iwd~~~~-------~-~~~~~~~~~~v~~~~~~~~~~-~~~ 360 (513)
++..+. ...+|..+.|++++.++..+. .+.|.+++++.. . ......+.+.++.+.|.|-+. +++
T Consensus 86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 999887 678899999999997775554 467899999732 3 346677788999999999886 779
Q ss_pred EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296 361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG 440 (513)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g 440 (513)
|..+|.|.+||+++++.+.... ..|...|+.++++++..+++|+
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~------------------------------------~~h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSD------------------------------------EEHSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred ecCCCcEEEEEcccCceeeech------------------------------------hhhccccccccccCCcceEEec
Confidence 9999999999999987655443 2333449999999999999999
Q ss_pred cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC
Q 010296 441 AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP 490 (513)
Q Consensus 441 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg 490 (513)
+.|.+-++||+.+. ..+..+....||++.+++|...+++.++|++.
T Consensus 209 s~Dttakl~D~~tl----~v~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTL----EVLKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred ccCccceeeeccce----eeEEEeeecccccceecccccceEEecCCcee
Confidence 99999999999876 44455556789999999999999998877763
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.9e-30 Score=214.96 Aligned_cols=242 Identities=21% Similarity=0.319 Sum_probs=212.8
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR 233 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 233 (513)
.+.-|..+|.|+.|+.|..+||+|+.||.|+||.+.+|.+++.+ ...|...|+|+.||.|+.
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF------------------drAHtkGvt~l~FSrD~S 319 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF------------------DRAHTKGVTCLSFSRDNS 319 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh------------------hhhhccCeeEEEEccCcc
Confidence 34468899999999999999999999999999999999999876 358999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec--ccCCeEEEE
Q 010296 234 YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG--HQSEVLTID 311 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~ 311 (513)
.+++++.|.+++|.-+.+|+++..+++|...|+...|.++|.++++++.||+|++|+..+..|+.+++. ...+|+++.
T Consensus 320 qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~ 399 (508)
T KOG0275|consen 320 QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI 399 (508)
T ss_pred hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999988864 345788888
Q ss_pred eeCCC--eEEEEeCCCcEEEEecCCCeeeEEecC---CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296 312 CLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAP---ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH 385 (513)
Q Consensus 312 ~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (513)
..|.+ .+++|...++|++.++...-...+... .+...+++.+|.|. +.+.+.|+.++.|.+.+|+.-.++..+.
T Consensus 400 ~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 88854 788999999999999986655544332 34566788899997 5688999999999999999888875443
Q ss_pred CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
. -+..++-+|..++||+-+.||.+++|.
T Consensus 480 k-------------------------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 K-------------------------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred c-------------------------------------cccccccCcccchhhhhcccchhhhcC
Confidence 3 278889999999999999999999995
No 92
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8.6e-28 Score=230.42 Aligned_cols=246 Identities=14% Similarity=0.181 Sum_probs=191.7
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee-------------eeccCcCCCeEEEEEec-CCCeEEEEeCCC
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-------------QAFPGHRGPVSCLTFRQ-GTSELFSGSFDR 284 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 284 (513)
+...|.....++++..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666667777666777777777777775443322 23678999999999999 788999999999
Q ss_pred cEEEEeCCCC-------ceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeec
Q 010296 285 TVKIWNAEDR-------AYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFIS 354 (513)
Q Consensus 285 ~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~ 354 (513)
+|++||+.++ ..+..+.+|...|.+++|+|.+ .+++++.|++|++||+.++... .+..|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999764 3467788999999999999964 6779999999999999987765 5567888999999999
Q ss_pred CCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296 355 NDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG 433 (513)
Q Consensus 355 ~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 433 (513)
++. |++++.|+.|+|||+++++.+..+..+... .+..+.|+++
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~------------------------------------~~~~~~w~~~ 222 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA------------------------------------KSQRCLWAKR 222 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC------------------------------------cceEEEEcCC
Confidence 986 779999999999999999988776533211 1456778888
Q ss_pred CCEEEEec----CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 434 SDLAASGA----GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 434 ~~~l~~g~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
+.+|++++ .|+.|+|||+++...++... .......+....|++++.+|++++..|+.|++|++..+.
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 77777654 47899999998764444322 222345567778999999999985569999999998664
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.6e-29 Score=241.00 Aligned_cols=268 Identities=18% Similarity=0.243 Sum_probs=215.7
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
..+-++..|.+.|+|+.|+|||.+||+|+.|+.|.||.... ......+....-......+.....+.+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 34456678999999999999999999999999999999885 12111111111122222334445678899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc------
Q 010296 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH------ 303 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------ 303 (513)
|++.+|++++.|++|.||+..+.+.+.++.+|.+.|..+.|.|-|+||++-+.|++|+||++......+.+..+
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998776666655433
Q ss_pred cCCeEEEEeeCCCeEEEEe-----CCCcEEEEecCCCe-eeEEecCCCCeeEEEeecC------C------------eEE
Q 010296 304 QSEVLTIDCLRKERVLTVG-----RDRSMQLWKVPEES-RLVFRAPASSLECCCFISN------D------------EFL 359 (513)
Q Consensus 304 ~~~v~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~------~------------~~~ 359 (513)
...+..+.|+|+|.+++.. ...++.|.+-.+.+ ...+.+|..++.++.|+|. . .++
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 3357889999999777443 23567777765555 3478899999999999872 1 256
Q ss_pred EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE
Q 010296 360 SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS 439 (513)
Q Consensus 360 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 439 (513)
+|+.|++|.||.....+|+..+..... ..|..++|+|||..|++
T Consensus 299 vgSqDrSlSVW~T~~~RPl~vi~~lf~------------------------------------~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTALPRPLFVIHNLFN------------------------------------KSIVDMSWSPDGFSLFA 342 (942)
T ss_pred EecCCccEEEEecCCCCchhhhhhhhc------------------------------------CceeeeeEcCCCCeEEE
Confidence 899999999999999998887764332 23999999999999999
Q ss_pred ecCCCcEEEEEeCCC
Q 010296 440 GAGNGSVRLWAIESE 454 (513)
Q Consensus 440 g~~dg~v~vwd~~~~ 454 (513)
+|.||+|.+..+...
T Consensus 343 cS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 343 CSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCeEEEEEcchH
Confidence 999999999998753
No 94
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=6.6e-29 Score=220.68 Aligned_cols=283 Identities=17% Similarity=0.287 Sum_probs=229.4
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
.|..-|.++.+|...++++||+. |.|+|||+.......-+ .+........-|.++.++|||+.|+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pv--------------sqLdcl~rdnyiRSckL~pdgrtLi 481 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPV--------------SQLDCLNRDNYIRSCKLLPDGRTLI 481 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcc--------------ccccccCcccceeeeEecCCCceEE
Confidence 58888999999999999999996 88999999764321100 0001123356699999999999999
Q ss_pred EEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296 237 SGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR 314 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 314 (513)
+|+.-.++.|||+..-.+ ...+....-.+.+++.+||.+..+++..||.|.|||+.....++.|.+|...+.||..++
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence 999999999999976543 333444445678899999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296 315 KE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK 392 (513)
Q Consensus 315 ~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 392 (513)
+| +|.+|+-|++|+.||++.+..+......+.|.++...|++. +++|-.++.+.|........ +.+
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yql----------- 629 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQL----------- 629 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc-eee-----------
Confidence 88 67799999999999999988876666677899999999986 77888999888876544332 222
Q ss_pred CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296 393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS 472 (513)
Q Consensus 393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 472 (513)
..|...|.++.|.+.|+++++.+.|+.+..|...-+ ..++..+..++|.+
T Consensus 630 --------------------------hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG----asiFqskE~SsVls 679 (705)
T KOG0639|consen 630 --------------------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLS 679 (705)
T ss_pred --------------------------cccccEEEEEEecccCceeeecCchhhhhhccCccc----cceeeccccCccee
Confidence 344455999999999999999999999999999888 34444556788999
Q ss_pred EEeecCCCEEEEEecCCCccccccc
Q 010296 473 LAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 473 v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
+.+|.|.+|+++| +.|..-.+|.+
T Consensus 680 CDIS~ddkyIVTG-SGdkkATVYeV 703 (705)
T KOG0639|consen 680 CDISFDDKYIVTG-SGDKKATVYEV 703 (705)
T ss_pred eeeccCceEEEec-CCCcceEEEEE
Confidence 9999999999999 55555555543
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.1e-28 Score=226.03 Aligned_cols=331 Identities=15% Similarity=0.208 Sum_probs=239.0
Q ss_pred ccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC-
Q 010296 141 SRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ- 219 (513)
Q Consensus 141 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 219 (513)
-.+|.....+.+.+++++...|+++.=+|--..+|.|..+|+|.|+++..++.+..+ .|
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF--------------------k~d 243 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF--------------------KQD 243 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE--------------------Ecc
Confidence 346778888999999999999999999999999999999999999999999988766 44
Q ss_pred cccEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC---
Q 010296 220 SKHILALAVSSDGRY-LASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR--- 294 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--- 294 (513)
.+.|++++|..||+. |++|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|+.+++|=..++
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 488999999999874 6677777999999999888877766 69899999999999999999999999888843321
Q ss_pred -ceeEEeecccC--------------------------------------------------------------------
Q 010296 295 -AYISTLFGHQS-------------------------------------------------------------------- 305 (513)
Q Consensus 295 -~~~~~~~~~~~-------------------------------------------------------------------- 305 (513)
+.++.-.+|..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 11222222333
Q ss_pred ----------------------------------------------CeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee
Q 010296 306 ----------------------------------------------EVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL 338 (513)
Q Consensus 306 ----------------------------------------------~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~ 338 (513)
.+++++.++.|.|+ .|.+.|.|-+|++.++...
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 34444555545444 4445666666666665544
Q ss_pred EE----ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCccc-------CCCCcccCcCccccccC
Q 010296 339 VF----RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD-------GLKNFEQDEGKISNGHS 406 (513)
Q Consensus 339 ~~----~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~ 406 (513)
.. ..|..+|+.++...-++ +++++.+|.+.+||..+..++..+...+.... .+.....+.-.|.+...
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 22 25666777777766554 66788888888888877776666655443221 11111111112211111
Q ss_pred CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe
Q 010296 407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV 486 (513)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 486 (513)
....+ .-...+|...|+.++|||+|++|++++.|++|++||+.++ ..+..+....+++++.|||+|.+||++.
T Consensus 564 ~t~kv---vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----~lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 564 VTRKV---VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----TLIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred hhhhh---hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----ceeeeEecCCcceeeEECCCCCEEEEEE
Confidence 11000 0111568888999999999999999999999999999998 4444444678899999999999999995
Q ss_pred cCCCcccccccC
Q 010296 487 GQEPRLGRWGHL 498 (513)
Q Consensus 487 ~~dg~v~~W~~~ 498 (513)
-+...|++|...
T Consensus 637 vd~~gIylWsNk 648 (910)
T KOG1539|consen 637 VDQNGIYLWSNK 648 (910)
T ss_pred ecCceEEEEEch
Confidence 555789999644
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-29 Score=227.68 Aligned_cols=290 Identities=17% Similarity=0.337 Sum_probs=232.4
Q ss_pred ccCCCeE---EEEEC-CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 157 KHRQSVT---AVALS-EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 157 ~h~~~V~---~~~~s-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
.|...|. .+..+ |.++||+|||.||.|++|++........ ......+..|...|..++...++
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s-------------~~~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS-------------TPYIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc-------------cchhhhhhhhHhHHhhHHhhcCC
Confidence 4555565 45554 4677899999999999999875443210 00123567899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCc--ceeeeccCcCCCeEEEEE-ecCCCeEEEEeCCCcEEEEeCCCCc--eeEE--------
Q 010296 233 RYLASGGLDRHIHLWDTRIQ--EHIQAFPGHRGPVSCLTF-RQGTSELFSGSFDRTVKIWNAEDRA--YIST-------- 299 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-------- 299 (513)
+.|++++.|-+|++|+...+ -++.++..|...|.|+++ .++...+++|+.|+.|.+||+.++. .+..
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 99999999999999999877 577889999999999999 7788889999999999999999772 2222
Q ss_pred ee-cccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC
Q 010296 300 LF-GHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK 375 (513)
Q Consensus 300 ~~-~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~ 375 (513)
+. ++...|++++.++.+.++ +|+..+.|++||.++...+ .+.+|...|.++..+++|. ++++++||+|++||+...
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 22 678899999999988555 7888999999999987765 7789999999999999995 999999999999999999
Q ss_pred CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296 376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET 455 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~ 455 (513)
+++.++..+. ..|+++..+|+-.++++|+.||.|+.=|+.+..
T Consensus 246 rCl~T~~vH~-------------------------------------e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 246 RCLATYIVHK-------------------------------------EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ceeeeEEecc-------------------------------------CceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 9999975433 339999999999999999999999999999862
Q ss_pred cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
. ...+.. ...+|..+..+....-+-++ ..|+.|+.|.....
T Consensus 289 ~-~tlick--~daPv~~l~~~~~~~~~Wvt-Ttds~I~rW~~~~~ 329 (735)
T KOG0308|consen 289 K-STLICK--EDAPVLKLHLHEHDNSVWVT-TTDSSIKRWKLEPD 329 (735)
T ss_pred h-heEeec--CCCchhhhhhccccCCceee-eccccceecCCccc
Confidence 2 233333 45678878777544443444 67899999976543
No 97
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.5e-27 Score=228.01 Aligned_cols=230 Identities=15% Similarity=0.175 Sum_probs=178.4
Q ss_pred EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCc--------eeEEeecccCCeE
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRA--------YISTLFGHQSEVL 308 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~ 308 (513)
|+..+.|++|++.....+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999998888888899999999999999997 7899999999999999997642 3446788999999
Q ss_pred EEEeeCCCe-E-EEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296 309 TIDCLRKER-V-LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAH 385 (513)
Q Consensus 309 ~~~~~~~~~-~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (513)
+++|+|++. + ++++.|++|++||+.++.......+...|.+++|+++|. |++++.|+.|+|||+++++.+..+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999763 3 578899999999999887664444667899999999997 6678889999999999999888775432
Q ss_pred CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC----cEEEEEeCCCCcceeee
Q 010296 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG----SVRLWAIESETKDIQPL 461 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg----~v~vwd~~~~~~~~~~~ 461 (513)
.. .....+....|++++.+|++++.++ .|+|||++....++..+
T Consensus 210 g~--------------------------------~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 210 GG--------------------------------KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred CC--------------------------------ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 21 0011134455678999999988764 79999999754555544
Q ss_pred eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
....+.+.+......++|.++++| +.|+.|++|++..+
T Consensus 258 ~ld~~~~~L~p~~D~~tg~l~lsG-kGD~tIr~~e~~~~ 295 (568)
T PTZ00420 258 SIDNASAPLIPHYDESTGLIYLIG-KGDGNCRYYQHSLG 295 (568)
T ss_pred EecCCccceEEeeeCCCCCEEEEE-ECCCeEEEEEccCC
Confidence 332234444444445567777777 89999999998765
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8.4e-29 Score=220.74 Aligned_cols=250 Identities=19% Similarity=0.324 Sum_probs=198.7
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce----eeec-cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEe
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAF-PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 290 (513)
+.+|+..|.++++.|.|..|++|+.|.+|++||+..... .+.+ +.....|.+++|++.+..|++.+....++|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 357888899999999999999999999999999874321 1122 23456899999999999999999999999999
Q ss_pred CCCCceeEE------------eecccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeee--EE-----ecCCCCeeE
Q 010296 291 AEDRAYIST------------LFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRL--VF-----RAPASSLEC 349 (513)
Q Consensus 291 ~~~~~~~~~------------~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~--~~-----~~~~~~v~~ 349 (513)
-.....+.. .++|...++|.+|+|. +.|++++.||++++|++...+.. ++ .+...+++.
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 765544333 2578889999999996 47999999999999999764432 11 123457889
Q ss_pred EEeecCCe-EEEEeCCCCEEEEecCCC--CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296 350 CCFISNDE-FLSGSDDGSIELWSLLRK--KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS 426 (513)
Q Consensus 350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 426 (513)
|+|++++. |++|+.||.|.+|+.... .+...+...|.. ...|+
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~----------------------------------g~~It 368 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP----------------------------------GQDIT 368 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC----------------------------------CCcee
Confidence 99999997 779999999999998554 334444433322 11399
Q ss_pred EEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC-----CCcccccccCC
Q 010296 427 SVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ-----EPRLGRWGHLP 499 (513)
Q Consensus 427 ~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~-----dg~v~~W~~~~ 499 (513)
||+||++|++|++-+.|++++|||++...+++.....++..-+-+.++|||+.++|++|++. .|.+.+++..+
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 99999999999999999999999999988888888887777788899999999999998653 36677776554
No 99
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=198.75 Aligned_cols=246 Identities=17% Similarity=0.247 Sum_probs=203.2
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceee--eccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 291 (513)
...+|...|.+++|+.+|..|++|+.|+++.+|++...+... ...+|.+.|-.++|+|. ...|++++.|.+|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 356788999999999999999999999999999998775543 35679999999999874 467889999999999999
Q ss_pred CCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEE
Q 010296 292 EDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDDGSIEL 369 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~i 369 (513)
++++++..+....+. .-+.|+|++ ++++++.|..|.+.|.++.+..........+.-++|+..+ .|+.....|+|.|
T Consensus 95 r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 95 RSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred ccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 999999888754444 456788866 6778889999999999998887666666677778887555 4666677899999
Q ss_pred EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296 370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449 (513)
Q Consensus 370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw 449 (513)
......+++..++ .|+....|+.|+|+|++||+|+.|..+.+|
T Consensus 174 LsypsLkpv~si~-------------------------------------AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 174 LSYPSLKPVQSIK-------------------------------------AHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred Eeccccccccccc-------------------------------------cCCcceEEEEECCCCceEeeccccceeecc
Confidence 9999999998885 333448999999999999999999999999
Q ss_pred EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
|+... ...+.+.. +.-+|+.+.||.||++||++ +.|..|-|=++.++.+
T Consensus 217 D~~EL-iC~R~isR--ldwpVRTlSFS~dg~~lASa-SEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 217 DVDEL-ICERCISR--LDWPVRTLSFSHDGRMLASA-SEDHFIDIAEVETGDR 265 (313)
T ss_pred ChhHh-hhheeecc--ccCceEEEEeccCcceeecc-CccceEEeEecccCCe
Confidence 99875 33334433 67899999999999999999 9998887766666543
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.6e-28 Score=224.75 Aligned_cols=324 Identities=17% Similarity=0.196 Sum_probs=250.9
Q ss_pred EEeeccccCCCcccchhhhhccCCCeEEEEECCC-----------CCeEEEEeCCceEEEEeCCCCccccccCCCh----
Q 010296 137 RVIASRVQKPEATDEFRVLLKHRQSVTAVALSED-----------DSKGFSASKDGSILHWDVSSGKGVKYLWPSE---- 201 (513)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-----------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~---- 201 (513)
.+..|.+.++........+.-|...|+.+.--|. ...+.||+.|++|++|++..+..-..+..+.
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 3445666666677777778889999999887661 2358899999999999998754333321110
Q ss_pred -----------hhhccCC---CCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEE
Q 010296 202 -----------EVLKSHG---AKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSC 267 (513)
Q Consensus 202 -----------~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 267 (513)
..+...+ ..............+.+++.+|+|++||+|..-|+++||++...+....+..|...|.|
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence 0000000 01111233445667999999999999999999999999999999999999999999999
Q ss_pred EEEec---CCCeEEEEeCCCcEEEEeCCC-CceeEEeecccCCeEEEEeeCCC---eEEEEeCCCcEEEEecCCCe-eeE
Q 010296 268 LTFRQ---GTSELFSGSFDRTVKIWNAED-RAYISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPEES-RLV 339 (513)
Q Consensus 268 ~~~~~---~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~-~~~ 339 (513)
+.|+. ..++|++++.|..|+|||+.. ..++.++.+|...|+++.|.-.| ++++++.|..|.+--.+... -..
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 99975 246799999999999999865 45678889999999999998755 78899999888764433211 111
Q ss_pred -----EecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCC
Q 010296 340 -----FRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNP 413 (513)
Q Consensus 340 -----~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 413 (513)
.......+..+.+.|... +++++.|..|+||++.+++..+.|+..+.
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~--------------------------- 639 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD--------------------------- 639 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc---------------------------
Confidence 122335677888888875 77999999999999999999999986543
Q ss_pred CCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccc
Q 010296 414 GSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLG 493 (513)
Q Consensus 414 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~ 493 (513)
+.+....+...|.|.|||+.+.|.++.++|+.++ ..+..+.. |...|+.+.|.+|.++|++. +.||.|.
T Consensus 640 -------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~G--HsE~VTG~kF~nDCkHlISv-sgDgCIF 708 (1080)
T KOG1408|consen 640 -------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTG--HSEAVTGVKFLNDCKHLISV-SGDGCIF 708 (1080)
T ss_pred -------CCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcC--cchheeeeeecccchhheee-cCCceEE
Confidence 3344778899999999999999999999999998 44444444 89999999999999999999 8899999
Q ss_pred ccccC
Q 010296 494 RWGHL 498 (513)
Q Consensus 494 ~W~~~ 498 (513)
+|.+.
T Consensus 709 vW~lp 713 (1080)
T KOG1408|consen 709 VWKLP 713 (1080)
T ss_pred EEECc
Confidence 99764
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.3e-28 Score=203.60 Aligned_cols=280 Identities=17% Similarity=0.236 Sum_probs=225.9
Q ss_pred cccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCC------CCccccccC---------------CC
Q 010296 142 RVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVS------SGKGVKYLW---------------PS 200 (513)
Q Consensus 142 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~------~~~~~~~~~---------------~~ 200 (513)
.+|..+...++..+.||.+.|+||.|++.+.+++|++.|++..||... ......... ..
T Consensus 173 ~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~ 252 (481)
T KOG0300|consen 173 RIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDS 252 (481)
T ss_pred eEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccc
Confidence 468888999999999999999999999999999999999999999832 111100000 00
Q ss_pred hhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE
Q 010296 201 EEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG 280 (513)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (513)
......+....|...+.+|...|.+..|-..|+.+++++.|.+..+||++++.++..+.+|....+.++-+|..+++++.
T Consensus 253 ~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 253 SEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred ccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence 01112223356777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCCe-
Q 010296 281 SFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISNDE- 357 (513)
Q Consensus 281 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~- 357 (513)
+.|.+.++||++.. ..+..|.+|...|+++.|..+.++++++.|.+|++||+++... +......+++..++++..+.
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPI 412 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCce
Confidence 99999999999853 4577899999999999999999999999999999999987654 34455667888899988885
Q ss_pred EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC--C
Q 010296 358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS--D 435 (513)
Q Consensus 358 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~ 435 (513)
++.--.+..|++||+...... .++... ..+|..-|+|++|..+. .
T Consensus 413 IAiPhDNRqvRlfDlnG~Rla-RlPrts--------------------------------RqgHrRMV~c~AW~eehp~c 459 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNGNRLA-RLPRTS--------------------------------RQGHRRMVTCCAWLEEHPAC 459 (481)
T ss_pred EEeccCCceEEEEecCCCccc-cCCccc--------------------------------ccccceeeeeeeccccCccc
Confidence 556667789999998765432 222111 14566669999998643 3
Q ss_pred EEEEecCCCcEEEEEeCCC
Q 010296 436 LAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 436 ~l~~g~~dg~v~vwd~~~~ 454 (513)
-|++++-|..+.-|.++..
T Consensus 460 nLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 460 NLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccceeeeeEeccc
Confidence 5788999999999998765
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=7.9e-29 Score=215.10 Aligned_cols=247 Identities=18% Similarity=0.315 Sum_probs=212.9
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc--eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE--HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 292 (513)
.+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..++|+++.|.++++++++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 456789999999999998999999999999999987766 678888888999999999999999999999999999999
Q ss_pred CCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEe
Q 010296 293 DRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWS 371 (513)
Q Consensus 293 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd 371 (513)
..+...++.+|...|+++.|.... ++++++.|.+|++||+....+.....+...+..++.. ...+++|..|++|++||
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~-~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS-ISDVISGHFDKKVRFWD 328 (459)
T ss_pred chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec-ceeeeecccccceEEEe
Confidence 999999999999999999998765 4889999999999999988777666666666666665 33478999999999999
Q ss_pred cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
.++..+........ .|+++..+++|..|.+++.|.++.+.|+
T Consensus 329 ~Rs~~~~~sv~~gg--------------------------------------~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 329 IRSADKTRSVPLGG--------------------------------------RVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred ccCCceeeEeecCc--------------------------------------ceeeEeeccCCeEEeeecCCCceeeeec
Confidence 99999988876433 3999999999999999999999999999
Q ss_pred CCCCcceeeeee--cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 452 ESETKDIQPLYN--LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 452 ~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
++. ...+++.. +......+.+.|||++.|+++| |.||.|+||++.++.-
T Consensus 371 Rt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG-S~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 371 RTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG-SADGSVYIWSVFTGKL 421 (459)
T ss_pred ccc-cEEEEeeccccccccccceeEECCCCceeeec-cCCCcEEEEEccCceE
Confidence 987 33333322 1224558999999999999999 9999999999988754
No 103
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2e-27 Score=209.75 Aligned_cols=281 Identities=20% Similarity=0.278 Sum_probs=218.5
Q ss_pred CeEEEEe-CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296 172 SKGFSAS-KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR 250 (513)
Q Consensus 172 ~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 250 (513)
.|++++. .-..|.+|.+........ ..--.++|.+++-+|.|.+|+.|+..|.|++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------------------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------------------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhhh-------------------hcccccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 4555553 345788888765544331 12336679999999999999999999999999999
Q ss_pred CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---------CCceeEEeecccCCeEEEEeeCC---CeE
Q 010296 251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---------DRAYISTLFGHQSEVLTIDCLRK---ERV 318 (513)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~---~~~ 318 (513)
+|..+..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+. +-+++..+..|.-+|+.+...+. .++
T Consensus 112 sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 112 SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 999999999999999999999999999999999999999863 34567888999999999998764 589
Q ss_pred EEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEE---eecCCCcccCCCCc
Q 010296 319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYI---VKNAHPLLDGLKNF 394 (513)
Q Consensus 319 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~ 394 (513)
++++.|.++++||+..+..+........+.++++.|..+ +++|+.+|.|.+.++........ .+..+......
T Consensus 192 ~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~--- 268 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI--- 268 (476)
T ss_pred EEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccccee---
Confidence 999999999999999999888888888999999999986 77999999999988866442111 00001000000
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCc--ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAY--SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS 472 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 472 (513)
..+ .+|. ..|+|++++-||.+|++|+.||.|+|||+.+. +.++.+.. ..++|+-
T Consensus 269 -------------------~~~--~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~--~kgpVtn 324 (476)
T KOG0646|consen 269 -------------------NVL--VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQT--SKGPVTN 324 (476)
T ss_pred -------------------eee--ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhh--hccccce
Confidence 001 2333 37999999999999999999999999999987 44444432 5789999
Q ss_pred EEeecCCCEEEEEecCCCcccccccC
Q 010296 473 LAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 473 v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
+.+.|=-+-.+.+.+....+-.|+..
T Consensus 325 L~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 325 LQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred eEeeccccceecccccCccCCchHhh
Confidence 99977666566554566666666543
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=220.56 Aligned_cols=276 Identities=15% Similarity=0.190 Sum_probs=227.7
Q ss_pred hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 234 (513)
.+|+..-+.|+|.|+|.+|+||+.||.|++|+..+. +...++ ..+...|++++.. +.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-------------------~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-------------------DISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-------------------hccCceeEEEeec--ccc
Confidence 379999999999999999999999999999998765 332222 2266778888775 559
Q ss_pred EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC
Q 010296 235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR 314 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 314 (513)
|++|+.+++|.+|.+.+++.-..+...+-++.+++|+.+|++++.|+.|-.|++.++........+.+|.++|.++.|+|
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 99999999999999998887666666778999999999999999999999999999999999999999999999999999
Q ss_pred CCeEE-EEeCCCcEEEEecCCCeeeEEec---------CCCCeeEEEeecC-CeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 315 KERVL-TVGRDRSMQLWKVPEESRLVFRA---------PASSLECCCFISN-DEFLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 315 ~~~~~-~~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~-~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
.+.|+ +.+.||.|++|++..+....... ....+..++|+|+ |.|++.+.|+.|.+|+..++...+.+..
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 98776 67789999999998876542111 1345667899999 4799999999999999999998888765
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
.+. ...++.++|+|+|+|||+++.+|.|.|||+.+...
T Consensus 229 ~~~-----------------------------------ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------- 266 (933)
T KOG1274|consen 229 KLS-----------------------------------SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------- 266 (933)
T ss_pred ccc-----------------------------------ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------
Confidence 332 12289999999999999999999999999987411
Q ss_pred cCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
......|.+++|.|+...|-.. ...|...+|
T Consensus 267 ~~~~~~Vc~~aw~p~~n~it~~-~~~g~~~~~ 297 (933)
T KOG1274|consen 267 HEFKRAVCCEAWKPNANAITLI-TALGTLGVS 297 (933)
T ss_pred ccccceeEEEecCCCCCeeEEE-eeccccccC
Confidence 1245679999999998876555 455666666
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.9e-28 Score=194.50 Aligned_cols=249 Identities=18% Similarity=0.286 Sum_probs=201.0
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc---ceeeeccCcCCCeEEEEEec--CCCeEEEEeCCCcEEEEe
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWN 290 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 290 (513)
...|...|..+...--|+.||+++.|++|+|+.++.. +++..|.+|.++|+.++|.. -|.+|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4678888999888888999999999999999998754 46788999999999999965 789999999999999999
Q ss_pred CCCCce--eEEeecccCCeEEEEeeCCC---eEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEEEeecC---C--
Q 010296 291 AEDRAY--ISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECCCFISN---D-- 356 (513)
Q Consensus 291 ~~~~~~--~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~---~-- 356 (513)
-.+++. ......|...|++++|.|.+ .|++++.||.|.+++.+... ......|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 888753 34556799999999999964 45688999999999987652 2356788889999999875 2
Q ss_pred ----------eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296 357 ----------EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS 426 (513)
Q Consensus 357 ----------~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 426 (513)
+|++|+.|..|+||+...+.-...- . ...|..+|.
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~----~-------------------------------l~~H~dwVR 211 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER----T-------------------------------LEGHKDWVR 211 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhh----h-------------------------------hhhcchhhh
Confidence 3899999999999998876221111 0 067888899
Q ss_pred EEEEecCC----CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 427 SVTVCGGS----DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 427 ~~~~s~~~----~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
.++|+|.- .+||+++.||+|.||-......+.+.....+....+..+.||+.|..|+++ +.|..|.+|.-...
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs-~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS-GGDNKVTLWKENVD 288 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEe-cCCcEEEEEEeCCC
Confidence 99999954 589999999999999987542333222222256789999999999999999 78889999965443
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=200.20 Aligned_cols=253 Identities=22% Similarity=0.310 Sum_probs=202.8
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------c------ceeeeccCcCCCeEEEEEecCCCe
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI------------Q------EHIQAFPGHRGPVSCLTFRQGTSE 276 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~ 276 (513)
.+..|..++.+.+|+|||.++++|+.|..|+|.|++. + -.++++..|...|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4568999999999999999999999999999999761 1 246778889999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeEE--eecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeE----EecCCCCeeE
Q 010296 277 LFSGSFDRTVKIWNAEDRAYIST--LFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLV----FRAPASSLEC 349 (513)
Q Consensus 277 l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~ 349 (513)
|++++.|++|+++|+......+. ......+|.++.|+|.|.++ ++.....+++||+.+-++.. -..|...|++
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~ 266 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ 266 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence 99999999999999976433222 22356689999999998766 66667899999999988763 3456788999
Q ss_pred EEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296 350 CCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV 428 (513)
Q Consensus 350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 428 (513)
+.+++.+. +++++.||.|+|||--+++++.++...|.. ..|++.
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-----------------------------------sevcSa 311 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-----------------------------------SEVCSA 311 (430)
T ss_pred EEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-----------------------------------ceeeeE
Confidence 99999997 779999999999999999999999876653 239999
Q ss_pred EEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCccc---EEEEEEeecCCCEEEEEecCCCcccccccCCCccc
Q 010296 429 TVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVG---FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARN 503 (513)
Q Consensus 429 ~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~---~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~ 503 (513)
.|..+|+++++.+.|..|++|.+.++ +.++........+ .-+...|+....|++.---..+.+.-||..++.+.
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 99999999999999999999999998 5555555432222 23445677676776665344567778877665543
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-27 Score=193.05 Aligned_cols=251 Identities=17% Similarity=0.238 Sum_probs=200.9
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--C
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--D 231 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 231 (513)
.-..|.+-|..+...-.|+.||||+.|++|+||.+.+..... +...+.+|.++|+.++|.. .
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeeccccc
Confidence 345799999999999999999999999999999998766422 1225689999999999965 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCC-c--eeEEeeccc
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDR-A--YISTLFGHQ 304 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~~ 304 (513)
|.+||++++||.|.||.-.+++- ...+..|...|++++|.|. |-.|++++.||.|.|.+.+.. . .......|.
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 99999999999999999887743 3455679999999999886 456889999999999998764 2 123346799
Q ss_pred CCeEEEEeeCC---C------------eEEEEeCCCcEEEEecCCCee---eEEecCCCCeeEEEeecCC-----eEEEE
Q 010296 305 SEVLTIDCLRK---E------------RVLTVGRDRSMQLWKVPEESR---LVFRAPASSLECCCFISND-----EFLSG 361 (513)
Q Consensus 305 ~~v~~~~~~~~---~------------~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~-----~~~~~ 361 (513)
-.|++++|.|. | +|++++.|+.|+||......- ..+..|...|..++|.|.- .++++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 99999999884 2 488999999999999988532 2578899999999999864 38899
Q ss_pred eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296 362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA 441 (513)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~ 441 (513)
+.||++.||.............. ......+..+.||+.|++|++++
T Consensus 230 SqDg~viIwt~~~e~e~wk~tll----------------------------------~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTLL----------------------------------EEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred cCCCcEEEEEecCccCccccccc----------------------------------ccCCcceEEEEEeccccEEEEec
Confidence 99999999987632111111111 11223499999999999999999
Q ss_pred CCCcEEEEEeCCC
Q 010296 442 GNGSVRLWAIESE 454 (513)
Q Consensus 442 ~dg~v~vwd~~~~ 454 (513)
.|+.|.+|.-+..
T Consensus 276 GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 276 GDNKVTLWKENVD 288 (299)
T ss_pred CCcEEEEEEeCCC
Confidence 9999999987654
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.2e-25 Score=208.68 Aligned_cols=275 Identities=12% Similarity=0.103 Sum_probs=201.2
Q ss_pred CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 010296 172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTR 250 (513)
Q Consensus 172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~ 250 (513)
..+++++.|+.|++||+.+++.+..+ ..+ ..+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~-------------------~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTF-------------------PVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEE-------------------ECC-CCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 56889999999999999988766544 222 336789999999876 566778999999999
Q ss_pred CcceeeeccCcCCCeEEEEEecCCCeEEEE-eCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCC-cE
Q 010296 251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSG-SFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDR-SM 327 (513)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~-~i 327 (513)
+++.+..+..+.. +..++|+|+++.++++ +.++.|++||+.+.+.+..+. +...+.+++|+|++.++ ++..++ .+
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~ 139 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMA 139 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeE
Confidence 9988877765443 5678999999987654 568999999999988777665 33456889999998665 444443 56
Q ss_pred EEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296 328 QLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH 405 (513)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 405 (513)
.+|+..+............+.+++|++++. ++ ++..++.|++||+.+++.+..+.......
T Consensus 140 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~----------------- 202 (300)
T TIGR03866 140 HFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV----------------- 202 (300)
T ss_pred EEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc-----------------
Confidence 778988776654333344567789999986 43 44568999999999988776654221100
Q ss_pred CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE-ecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEE
Q 010296 406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS-GAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIA 484 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 484 (513)
.........++|+|+++++++ .+.++.|.+||+.++ +....+ .+...+.+++|+|+|++|++
T Consensus 203 -------------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~~---~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 203 -------------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDYL---LVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred -------------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEE---EeCCCcceEEECCCCCEEEE
Confidence 000011456889999998654 355678999999876 222222 23457899999999999998
Q ss_pred EecCCCcccccccCCCcc
Q 010296 485 GVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 485 ~~~~dg~v~~W~~~~~~~ 502 (513)
+.+.++.|.+||......
T Consensus 266 ~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 266 TNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EcCCCCeEEEEECCCCcE
Confidence 867899999999987653
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=202.37 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=206.8
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (513)
.+.+..+.+.++.||+..|+.+.|+|+...+++++.|..|+||......... ....|..+|
T Consensus 246 ~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-------------------~~~~h~~~V 306 (506)
T KOG0289|consen 246 FDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-------------------SSRPHEEPV 306 (506)
T ss_pred EecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc-------------------ccccccccc
Confidence 3445567788999999999999999999999999999999999987766443 346899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCc--CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGH--RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
+.+..+|.|.||++++.|++..+.|++++..+...... .-.+++.+|+|||..|.+|..||.|+|||+.++..+..|.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 99999999999999999999999999999987766532 2348999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEE--ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC--C
Q 010296 302 GHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVF--RAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR--K 375 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~--~ 375 (513)
+|.++|..++|+.+|+++ +++.|+.|++||++....... ......+.++.|.+.|. +++++.+=+|++++-.+ .
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 999999999999999766 778888899999997765422 22334699999999997 55666665555555333 3
Q ss_pred CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
..+..+ ..|.+..+++.|....+++++++.|..++|+.+
T Consensus 467 ~~~~~~-------------------------------------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKEL-------------------------------------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehh-------------------------------------hhcccccceeeecccceEEeeccchhheEEeec
Confidence 333333 223344889999999999999999999888864
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=3.8e-25 Score=197.11 Aligned_cols=293 Identities=17% Similarity=0.310 Sum_probs=222.7
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (513)
|+-.........+.....|....|+|....|+.....+.+..|++..+...+..- ++ .......|
T Consensus 185 WdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~----~f-----------ek~ekk~V 249 (626)
T KOG2106|consen 185 WDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQG----IF-----------EKREKKFV 249 (626)
T ss_pred hhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEee----cc-----------ccccceEE
Confidence 3333344444555667889999999976655554456899999999887655320 00 01122679
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc--------
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-------- 295 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------- 295 (513)
.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-.-.+
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCch
Confidence 9999999986 7899999999999998888877777999999999999998755 59999999999832100
Q ss_pred ---ee-----------------------------EEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEec
Q 010296 296 ---YI-----------------------------STLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRA 342 (513)
Q Consensus 296 ---~~-----------------------------~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~ 342 (513)
.+ ....+|......++.+|. ..+++++.|+.+++|+ ..+......
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~ 405 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI 405 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE
Confidence 00 011346667777787775 4677888899999998 455555555
Q ss_pred CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296 343 PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY 422 (513)
Q Consensus 343 ~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 422 (513)
...++.|+.|+|.|.++.|+..|...+.|..+...+..-.. .
T Consensus 406 ~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d--------------------------------------~ 447 (626)
T KOG2106|consen 406 IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD--------------------------------------N 447 (626)
T ss_pred ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec--------------------------------------C
Confidence 66778888888888888888888888888888544443322 2
Q ss_pred ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
.++++++|+|+|.+||.|+.|+.|+||-+.............. ..+|+.+.||+|+++|.+- +-|-.|..|
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds~~~~~~-S~d~eiLyW 518 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDSQFLVSN-SGDYEILYW 518 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec-CceeEEeeecCCCceEEec-cCceEEEEE
Confidence 3399999999999999999999999999998766666665543 4899999999999999998 788899999
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=214.35 Aligned_cols=239 Identities=21% Similarity=0.376 Sum_probs=206.9
Q ss_pred cchhhhhccCCCeEE-EEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 150 DEFRVLLKHRQSVTA-VALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~-~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
...+.+.+|.+.|.+ ++|-+ ++-.|++|+.|.+|.+|.+.......++ .+|...|.|+.
T Consensus 48 l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-------------------kgH~snVC~ls 108 (745)
T KOG0301|consen 48 LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-------------------KGHKSNVCSLS 108 (745)
T ss_pred ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-------------------hccccceeeee
Confidence 344567789999988 88886 5556999999999999999988876654 89999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296 228 VSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307 (513)
Q Consensus 228 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 307 (513)
...++. |++||.|.++++|-. +++...+.+|...|+++++-|.. .++||+.|.+|++|.- ++.+.++.+|..-|
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V 182 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCV 182 (745)
T ss_pred cCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhhe
Confidence 888887 999999999999975 56777799999999999999987 8999999999999985 77899999999999
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEE-eecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296 308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCC-FISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHP 386 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 386 (513)
+.+++.+++.|++|+.||.|++|++.........+|...+.++. +.+++.+++++.|++++||+.. .+.+.+.....
T Consensus 183 RgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt 260 (745)
T KOG0301|consen 183 RGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT 260 (745)
T ss_pred eeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc
Confidence 99999999999999999999999998777889999999999999 4455678999999999999976 66666654332
Q ss_pred cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296 387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~ 453 (513)
. |+++.+-++|. |++|+.||.||||....
T Consensus 261 s-------------------------------------iWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 261 S-------------------------------------IWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred c-------------------------------------eEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 2 88999888885 67788899999999873
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-27 Score=215.49 Aligned_cols=334 Identities=19% Similarity=0.297 Sum_probs=237.7
Q ss_pred hcCceeEEeeccccCCC---cccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc--cccccCCChhhhc
Q 010296 131 ESGRVRRVIASRVQKPE---ATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK--GVKYLWPSEEVLK 205 (513)
Q Consensus 131 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~ 205 (513)
..||..-+..+.+.... ....+..++.|...|+.++...+++.|++++.|-+|++|+...+. ++.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s---------- 111 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS---------- 111 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh----------
Confidence 34555445544443222 233578899999999999999999999999999999999998763 333
Q ss_pred cCCCCCCCCCCCCCcccEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCcc--ee--------eecc-CcCCCeEEEEEecC
Q 010296 206 SHGAKDPQGRATKQSKHILALAV-SSDGRYLASGGLDRHIHLWDTRIQE--HI--------QAFP-GHRGPVSCLTFRQG 273 (513)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~vwd~~~~~--~~--------~~~~-~~~~~v~~~~~~~~ 273 (513)
.+..|..-|.|+++ .++..++|+|+.|+.|.+||++++. .+ ..+. ++..+|++++.++.
T Consensus 112 ---------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 112 ---------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ---------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 34789999999999 7888999999999999999999772 22 2233 78889999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEE
Q 010296 274 TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCC 351 (513)
Q Consensus 274 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~ 351 (513)
|..|++|+..+.|++||.++.+.+..+.+|...|.++..+++| +++++++||+|++||+....++ ++..|...++++.
T Consensus 183 ~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 183 GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence 9999999999999999999999999999999999999999988 7889999999999999988877 7888888999999
Q ss_pred eecCC-eEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcC-ccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296 352 FISND-EFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEG-KISNGHSENGNLNPGSYHSSSAYSWVSSV 428 (513)
Q Consensus 352 ~~~~~-~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 428 (513)
.+|.= .+.+|+.||.|..=|+++. +....++..++...-.. ...+.+ .+....+.-..+. .....
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~-~~~~~~~WvtTtds~I~rW~-----------~~~~~ 330 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL-HEHDNSVWVTTTDSSIKRWK-----------LEPDI 330 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh-ccccCCceeeeccccceecC-----------Ccccc
Confidence 98775 4889999999999999984 44444444433211000 000000 0000000000000 01122
Q ss_pred EEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 429 TVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 429 ~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
.+++.+.+.. -+.+....+.+... .+...++...+|...++-.|.+++++= ...|.+.+||+....+
T Consensus 331 ~l~~s~~~~~-~~T~~~~~~~~~~~-----tp~~vi~Gg~ai~k~~mL~dkRhVlTk-Da~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 331 ALSVSGDLDF-FSTDSNNHSCDLTN-----TPDSVIPGGAAIKKHAMLNDKRHVLTK-DAKGNVALWDILACVK 397 (735)
T ss_pred ccccCCCCCc-ccccCCCccccccC-----CCceeccCchhhhhhhhhcCcceEeee-cCCCCEEEEEeeeeee
Confidence 3333333333 22222233333211 111222334456666777888999998 8899999999877654
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=204.77 Aligned_cols=253 Identities=17% Similarity=0.297 Sum_probs=209.2
Q ss_pred eccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC
Q 010296 140 ASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ 219 (513)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (513)
..++|+.....++.++.+|.+.|..|+++. ..++++|.|.+|+.|.+... .+.++ ..
T Consensus 90 ~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~ti--------------------lg 146 (433)
T KOG0268|consen 90 EVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTI--------------------LG 146 (433)
T ss_pred eEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceee--------------------ec
Confidence 345788999999999999999999999987 77999999999999998763 33322 23
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
...++.|.-+..+..++||+. .|.|||.....++..+.-....|.++.|+|.... |++|+.|+.|.+||++++.++.
T Consensus 147 ~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 147 KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 445677777777788999885 5999999999999999888889999999997654 6677799999999999999887
Q ss_pred EeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296 299 TLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~ 374 (513)
.+. ....-+.|+|+|.+ .|+++..|..++.||++..... .+..|.+.|..+.|+|.|. |++|+.|.+|+||..+.
T Consensus 225 KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 225 KVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred eee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 765 45556889999966 5668889999999999875443 6788999999999999997 99999999999999988
Q ss_pred CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
+...-..... .-..|.|+.||.|.+++++||.|+.|++|.....
T Consensus 304 ~~SRdiYhtk------------------------------------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 304 GHSRDIYHTK------------------------------------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred CcchhhhhHh------------------------------------hhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 7644333211 1122999999999999999999999999998654
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=5.6e-26 Score=189.06 Aligned_cols=303 Identities=17% Similarity=0.260 Sum_probs=223.2
Q ss_pred hhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-
Q 010296 153 RVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS- 230 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 230 (513)
.....|.+.|+++...+ .|+|+++|+.||.|.|||++.......- ..+..+..........+|.-.|.++.|-|
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s----~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS----GLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc----cceeheeeeccccCCccceeeeeeeEEeee
Confidence 34557999999999998 5899999999999999999875521100 00000000112224568999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC---CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG---TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 307 (513)
|...|.+++.|.+++|||..+.+....|+ -.+.|.+-+|+|- ..++++|..+-.|++.|+.+|.+.+.+.+|...|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 66788899999999999999999888887 5678888888883 3467788899999999999999999999999999
Q ss_pred EEEEeeCCCe--EEEEeCCCcEEEEecCCC-eee---------------EEecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296 308 LTIDCLRKER--VLTVGRDRSMQLWKVPEE-SRL---------------VFRAPASSLECCCFISNDE-FLSGSDDGSIE 368 (513)
Q Consensus 308 ~~~~~~~~~~--~~~~~~d~~i~iwd~~~~-~~~---------------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~ 368 (513)
.++.|+|... |++++.||.|++||++.. .+. ....|.+.+..++|..++. +++++.|..++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 9999999763 448899999999999754 111 1234667889999999986 78999999999
Q ss_pred EEecCCCCeeEEeec--CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296 369 LWSLLRKKPVYIVKN--AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV 446 (513)
Q Consensus 369 iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v 446 (513)
+|+..+|.....-.. .+.. ..+.. +. +. +.+...++---.++.+
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~-------------------------------~~~~~-~~-~~-~~~s~vfv~~p~~~~l 317 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQ-------------------------------TTSFA-VH-IQ-SMDSDVFVLFPNDGSL 317 (397)
T ss_pred EeecccCcccccccccccccc-------------------------------cccce-EE-Ee-ecccceEEEEecCCeE
Confidence 999988753221110 0000 00000 11 22 2233344444445788
Q ss_pred EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
.++++-++ ..+..+.. |...|.|.++-|+-+.+.++ ..|+.|..|-..
T Consensus 318 all~~~sg-s~ir~l~~--h~k~i~c~~~~~~fq~~~tg-~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 318 ALLNLLEG-SFVRRLST--HLKRINCAAYRPDFEQCFTG-DMNGNIYMWSPA 365 (397)
T ss_pred EEEEccCc-eEEEeeec--ccceeeEEeecCchhhhhcc-ccCCcccccccc
Confidence 88888777 33444443 67789999999999999999 999999999763
No 115
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.4e-25 Score=196.69 Aligned_cols=298 Identities=17% Similarity=0.274 Sum_probs=232.8
Q ss_pred eccccCCCcccchhhhhccCCCeEEEEECC--CCCeEEEE--eCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCC
Q 010296 140 ASRVQKPEATDEFRVLLKHRQSVTAVALSE--DDSKGFSA--SKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGR 215 (513)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (513)
-.++|+......++.+......|+|++|++ .|.+|+.. +.+..+.|||.+.+......
T Consensus 135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v------------------ 196 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV------------------ 196 (626)
T ss_pred eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc------------------
Confidence 345678777777888877888999999998 35565543 56778999999877654422
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee---ccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA---FPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 291 (513)
...+..|....|+|....|++....+.+.+|+++.+..... |.. ....|.|++|.++|. +++|.++|.|.||+.
T Consensus 197 -k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 197 -KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK 274 (626)
T ss_pred -eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence 34566789999999665555544578999999988765543 333 235799999999876 789999999999999
Q ss_pred CCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe-----------------------------------
Q 010296 292 EDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES----------------------------------- 336 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----------------------------------- 336 (513)
.+.+..+....|.+.|.+++...+|.+++++.|+.|..||-.-.+
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 988887777799999999999999999999999999999832110
Q ss_pred ------eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCC
Q 010296 337 ------RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENG 409 (513)
Q Consensus 337 ------~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 409 (513)
.+...+|......++.+|.. .|++++.|+.+++|+ ..++..+.....+
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~----------------------- 409 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP----------------------- 409 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCc-----------------------
Confidence 01123455667778888876 488999999999999 5566655544333
Q ss_pred CCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCC
Q 010296 410 NLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQE 489 (513)
Q Consensus 410 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~d 489 (513)
+.|+.|+|.| .+|.|...|...+.|+.+. ..+. +.. ...++++|+|+|+|.+||+| +.|
T Consensus 410 ---------------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~-~~~--d~~~ls~v~ysp~G~~lAvg-s~d 468 (626)
T KOG2106|consen 410 ---------------AECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVT-IHT--DNEQLSVVRYSPDGAFLAVG-SHD 468 (626)
T ss_pred ---------------eeEeeccCcc-eEEEeeccceEEEEecccc-eeEE-EEe--cCCceEEEEEcCCCCEEEEe-cCC
Confidence 8899999999 9999999999999999885 3332 322 37899999999999999999 999
Q ss_pred CcccccccCCCccc
Q 010296 490 PRLGRWGHLPAARN 503 (513)
Q Consensus 490 g~v~~W~~~~~~~~ 503 (513)
+.|.||.+..+.+.
T Consensus 469 ~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 469 NHIYIYRVSANGRK 482 (626)
T ss_pred CeEEEEEECCCCcE
Confidence 99999988766543
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-25 Score=177.15 Aligned_cols=251 Identities=22% Similarity=0.250 Sum_probs=201.7
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
.....-+.|.+.|+|.+|+|+|.+|+||+.|.+|++.-+....+..+ .+...+.-|.+.|..++|-
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~--------------g~dle~nmhdgtirdl~fl 145 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT--------------GHDLEFNMHDGTIRDLAFL 145 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc--------------CcceeeeecCCceeeeEEe
Confidence 33455668999999999999999999999999999987765443321 1222456788999999996
Q ss_pred CC----CCEEEEEe-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec--
Q 010296 230 SD----GRYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG-- 302 (513)
Q Consensus 230 ~~----~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 302 (513)
.+ +.+|++++ .|..|++-|...|+..+.+.+|++.|.++ ++-++-.+++|+.|.+|++||++-..++.++..
T Consensus 146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 146 DDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred cCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 53 55777765 47788888999999999999999999876 334678899999999999999999888877632
Q ss_pred -----ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296 303 -----HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 303 -----~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~ 374 (513)
....|.+++..|.|+++ ++-.|..+.+||++.+..+ .+..|...|.|+.|+|... +++++.|..|++-|+..
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 23578999999999877 6667999999999999877 6778889999999999986 77999999999999865
Q ss_pred CC----eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 375 KK----PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 375 ~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
.- ++... ..|...+..+.|+|..--+++.+.|.++.+|-
T Consensus 305 dla~el~~~vv-------------------------------------~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 305 DLAHELPIMVV-------------------------------------AEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred chhhcCceEEE-------------------------------------EeccCceEEEEecCccceeeeccCcceEEEec
Confidence 31 22222 33444488899999998899999999999998
Q ss_pred eC
Q 010296 451 IE 452 (513)
Q Consensus 451 ~~ 452 (513)
++
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 64
No 117
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.1e-26 Score=209.19 Aligned_cols=292 Identities=17% Similarity=0.183 Sum_probs=223.8
Q ss_pred CCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296 145 KPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL 224 (513)
Q Consensus 145 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (513)
.+.+..+...+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.++.++ ...+.|.
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--------------------~~d~~I~ 445 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--------------------QFDSEIR 445 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--------------------eecceeE
Confidence 44566777788999999999999999999999999999999999999999865 3355799
Q ss_pred EEEEcCCCC--EEEEEeCCCcEEEEeCCCcc-------------------------------------eeeeccCcCCCe
Q 010296 225 ALAVSSDGR--YLASGGLDRHIHLWDTRIQE-------------------------------------HIQAFPGHRGPV 265 (513)
Q Consensus 225 ~~~~s~~~~--~l~s~~~dg~i~vwd~~~~~-------------------------------------~~~~~~~~~~~v 265 (513)
||+|+|.+. .||++-. ..+.|.+..-|. -+...-.|...|
T Consensus 446 ~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 446 SVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence 999999765 3444433 335554422110 011222377889
Q ss_pred EEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEe
Q 010296 266 SCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFR 341 (513)
Q Consensus 266 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~ 341 (513)
..|.|+..|.||++... ...|.|+++.......-|....+.|.++.|+|....+..+....|++||+.....+ .+.
T Consensus 525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~ 604 (733)
T KOG0650|consen 525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL 604 (733)
T ss_pred ceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh
Confidence 99999999999998765 35799999987776666666788899999999877676677789999999875544 334
Q ss_pred cCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296 342 APASSLECCCFISND-EFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS 419 (513)
Q Consensus 342 ~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 419 (513)
.....|..++++|.| .+++|+.|+.+..||+.-. ++..++.
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr------------------------------------- 647 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR------------------------------------- 647 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-------------------------------------
Confidence 445578889999988 5999999999999999765 4444443
Q ss_pred CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC-----CcceeeeeecC-cc----cEEEEEEeecCCCEEEEEecCC
Q 010296 420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE-----TKDIQPLYNLP-LV----GFVNSLAFAKSGQFLIAGVGQE 489 (513)
Q Consensus 420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~-----~~~~~~~~~~~-~~----~~v~~v~~sp~~~~l~~~~~~d 489 (513)
-|...+++++|++.-.+|++|+.||++.|+.-.-- ...+.++..+. |. ..|..+.|+|...+|+++ |.|
T Consensus 648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsA-GAd 726 (733)
T KOG0650|consen 648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSA-GAD 726 (733)
T ss_pred hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEec-CCC
Confidence 23344999999999999999999999999874321 12344444332 32 348889999999999999 999
Q ss_pred Cccccc
Q 010296 490 PRLGRW 495 (513)
Q Consensus 490 g~v~~W 495 (513)
|+|++|
T Consensus 727 ~tirlf 732 (733)
T KOG0650|consen 727 GTIRLF 732 (733)
T ss_pred ceEEee
Confidence 999999
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.5e-26 Score=203.88 Aligned_cols=266 Identities=17% Similarity=0.224 Sum_probs=204.8
Q ss_pred hccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CC
Q 010296 156 LKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GR 233 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~ 233 (513)
.-|.+.|+.+.+-|... .+||.+..+.|.|||.......... .+...|...+.+|...-++|+|++. ..
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccccccce
Confidence 46999999999999665 5557788999999998765433211 1123455577889988899999995 45
Q ss_pred EEEEEeCCCcEEEEeCCCcc-------eeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCC--CCceeEEeecc
Q 010296 234 YLASGGLDRHIHLWDTRIQE-------HIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAE--DRAYISTLFGH 303 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~ 303 (513)
+|++++.|+.|++||+.... +...+.+|...|..++|++-. ..|++++.|+.+.|||++ +.++.....+|
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence 79999999999999987432 346678899999999999954 567799999999999999 55666777889
Q ss_pred cCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCee--eEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCe
Q 010296 304 QSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESR--LVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 304 ~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~ 377 (513)
.+.|.|++|+|-+ .|++++.|++|.+||++.... ..+..|...|.++.|+|... |++++.|+.+.|||+..-..
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 9999999999943 455888999999999987554 47889999999999999874 78999999999999876332
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE-EEEecCCCcEEEEEeCC
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL-AASGAGNGSVRLWAIES 453 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~v~vwd~~~ 453 (513)
.+.-...... ..-..|...+|...|..+.|+|+..+ |++.+.|+.+.||....
T Consensus 352 eq~~eda~dg-----------------------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 352 EQSPEDAEDG-----------------------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccChhhhccC-----------------------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2211100000 00011233678888999999998865 66778999999999864
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=187.91 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=189.2
Q ss_pred CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-ccee-eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 218 KQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRI-QEHI-QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 218 ~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
.....|.+|+||| ...+|++++.||+|++|+++. +..+ .....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 556677999999999999986 3333 334569999999999999999999999999999999999
Q ss_pred ceeEEeecccCCeEEEEeeCCC---eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEe
Q 010296 295 AYISTLFGHQSEVLTIDCLRKE---RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWS 371 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd 371 (513)
+ +..+..|..+|.++.|.+.. .|++|+.|.+|++||++....+........+.++..-. ..++++..+..|.+|+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~-pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY-PMAVVATAERHIAVYN 182 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC-ceeEEEecCCcEEEEE
Confidence 5 55667799999999998754 46799999999999999888776666666666654432 2477888999999999
Q ss_pred cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
+.++........ ....-.+.|++..++....+.|+-.|.+-|..+
T Consensus 183 L~n~~te~k~~~-----------------------------------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 183 LENPPTEFKRIE-----------------------------------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred cCCCcchhhhhc-----------------------------------CcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence 977643222110 111222899999999988999999999999999
Q ss_pred CCCCcce-eeeeecC-------cccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 452 ESETKDI-QPLYNLP-------LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 452 ~~~~~~~-~~~~~~~-------~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
..+.... -.+.... .-..|++|+|+|....|+++ |.||++.+||...
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa-GsDGtf~FWDkda 282 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA-GSDGTFSFWDKDA 282 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEe-cCCceEEEecchh
Confidence 8752211 1111111 13468999999999999999 9999999998754
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.2e-26 Score=200.00 Aligned_cols=246 Identities=17% Similarity=0.281 Sum_probs=196.6
Q ss_pred CCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcc----------eeeeccCcCCCeEEEEEecCC-CeEEEEeCC
Q 010296 216 ATKQSKHILALAVSSDG-RYLASGGLDRHIHLWDTRIQE----------HIQAFPGHRGPVSCLTFRQGT-SELFSGSFD 283 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 283 (513)
...|.+.|+.+.+-|+. ..+|+++..+.|+|||..... +-.++.+|...-.+|+|++.. -+|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 35688899999999965 466777888999999975322 223678898878889998864 468899999
Q ss_pred CcEEEEeCCCCc-------eeEEeecccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCC--ee-eEEecCCCCeeEEE
Q 010296 284 RTVKIWNAEDRA-------YISTLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEE--SR-LVFRAPASSLECCC 351 (513)
Q Consensus 284 g~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~--~~-~~~~~~~~~v~~~~ 351 (513)
++|++||+.... ....+.+|...|..++|++- ..|.+++.|+.+.|||++++ +. .....|...+.|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 999999997532 34567899999999999984 45669999999999999953 22 25678899999999
Q ss_pred eecCCe--EEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296 352 FISNDE--FLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV 428 (513)
Q Consensus 352 ~~~~~~--~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 428 (513)
|+|-+. |++|+.|++|.+||+++.. ++.++ ..|...|.+|
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-------------------------------------e~H~dev~~V 322 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTF-------------------------------------EGHEDEVFQV 322 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceec-------------------------------------cCCCcceEEE
Confidence 999764 7799999999999999864 44444 4555569999
Q ss_pred EEecCC-CEEEEecCCCcEEEEEeCCCCcc----------eee-eeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 429 TVCGGS-DLAASGAGNGSVRLWAIESETKD----------IQP-LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 429 ~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~----------~~~-~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.|||.. ..||+++.|+.+.|||+..-... ... +..-.|...|..+.|+|+..+++++.+.|+.+.||.
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 999965 68899999999999999754221 122 333347889999999999999999989999999998
Q ss_pred cC
Q 010296 497 HL 498 (513)
Q Consensus 497 ~~ 498 (513)
..
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 75
No 121
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=197.12 Aligned_cols=299 Identities=14% Similarity=0.150 Sum_probs=227.1
Q ss_pred ccchhhhhccCCCeEEEEECCCC--CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDD--SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL 226 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 226 (513)
......++-|.++|++++|+|.. +++|+|..-|+|-+||+.+.+... .....+..|..+|.+|
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------d~v~~f~~hs~~Vs~l 240 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------DGVYLFTPHSGPVSGL 240 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------CceEEeccCCccccce
Confidence 34455667899999999999965 578899999999999996332211 0111356899999999
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeec
Q 010296 227 AVSSD-GRYLASGGLDRHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFG 302 (513)
Q Consensus 227 ~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~ 302 (513)
.|+|. -..+++.+.||+|++-|++.+..-. .+......+..+.|+.+...++.+..=|...+||++++.. ...+..
T Consensus 241 ~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred EecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 99994 5689999999999999998765433 3333455677888988888888888888999999998665 566677
Q ss_pred ccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCe-----eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecC-
Q 010296 303 HQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEES-----RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLL- 373 (513)
Q Consensus 303 ~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~- 373 (513)
|...|.+++++|.. .+++++.|++++|||++.-. .+....|...|.++.|+|.+ .+++.+.|..|+|||..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 88899999999954 67799999999999997532 24566788899999999986 59999999999999983
Q ss_pred ---CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce--EEEEEEecCCCEEEEecCCCcEEE
Q 010296 374 ---RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW--VSSVTVCGGSDLAASGAGNGSVRL 448 (513)
Q Consensus 374 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~g~~dg~v~v 448 (513)
.-.+..++...+. +..| .....|.|+..++++|..-..|-|
T Consensus 401 ~sa~~~p~~~I~Hn~~----------------------------------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNR----------------------------------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred ccccCCccceeeccCc----------------------------------ccccccchhheeCCCccEEEEeccCcceeE
Confidence 4445555543322 1122 445689999999999999889999
Q ss_pred EEeCCCCcceeeeeecCcccEEEE-EEeecCCCEEEEEecCCCcccccccC
Q 010296 449 WAIESETKDIQPLYNLPLVGFVNS-LAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 449 wd~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
+|-..+ +.+..+.. +....|.+ ..|+|-+..+++|++..|.|.||...
T Consensus 447 ~~~~~~-q~v~el~~-P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 447 FDGNGG-QMVCELHD-PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EcCCCC-EEeeeccC-ccccccccceeecccccceeccCCccceEEEEecC
Confidence 998776 33333332 22333443 58999998888888899999999543
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.8e-26 Score=211.47 Aligned_cols=286 Identities=15% Similarity=0.244 Sum_probs=220.0
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLAS 237 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s 237 (513)
....++|..+++-..|+.++. ..++||.+.......... +. . .........+..++|+. ..++||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~-----~~-~------k~kqn~~~S~~DVkW~~~~~NlIAT 105 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCN-----HR-F------KTKQNKFYSAADVKWGQLYSNLIAT 105 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCccee-----ee-c------ccccceeeehhhcccccchhhhhee
Confidence 456778888899888998886 467888776443211100 00 0 00011122355677875 4679999
Q ss_pred EeCCCcEEEEeCCC---cceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEee
Q 010296 238 GGLDRHIHLWDTRI---QEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL 313 (513)
Q Consensus 238 ~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 313 (513)
++..|.|.+||+.. .+.+..|..|...++++.|++.. .+|++|+.||+|++||++......++.+....|+.+.|+
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 99999999999986 56777899999999999999865 567899999999999999999999999889999999999
Q ss_pred CC--CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC--eeEEeecCCC
Q 010296 314 RK--ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK--PVYIVKNAHP 386 (513)
Q Consensus 314 ~~--~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 386 (513)
|. ..|+++...|.+++||++..... .+..|.++|.|+.|+|++. |++|+.|+.|+||++.+.+ ++.++...
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-- 263 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-- 263 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec--
Confidence 84 57889999999999999976654 6789999999999999875 7899999999999998654 34444332
Q ss_pred cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEec--CCCcEEEEEeCCCCcceeeeee
Q 010296 387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGA--GNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~--~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
.+|.++.|-|... .||+++ .|-.|+|||++..--+...+..
T Consensus 264 ------------------------------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 264 ------------------------------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ------------------------------------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 2399999999775 466654 5778999999987555555554
Q ss_pred cCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
|...++.++|-.....++-.++.||+|..-.+
T Consensus 308 --H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 308 --HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred --cCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 88899999997755555555599998865533
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8.5e-26 Score=201.02 Aligned_cols=255 Identities=16% Similarity=0.297 Sum_probs=212.7
Q ss_pred ccccCCCcccchhhhhc--cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCC
Q 010296 141 SRVQKPEATDEFRVLLK--HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATK 218 (513)
Q Consensus 141 ~~~~~~~~~~~~~~~~~--h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (513)
|.+..+....++..|.. -..-|.++.+.|||+.|++|+.-.+|.|||+......... .+..
T Consensus 445 Wdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika-----------------elts 507 (705)
T KOG0639|consen 445 WDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA-----------------ELTS 507 (705)
T ss_pred eeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh-----------------hcCC
Confidence 33333333334444433 3467999999999999999999999999999876543211 1223
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
..-.+++++.+||.+.++++..||.|.|||+.+...++.|++|...+.||.++++|..|.+|+-|++|+.||+++++.+.
T Consensus 508 sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 508 SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred EeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCC
Q 010296 299 TLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKK 376 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~ 376 (513)
... ....|.++.++|.+..+ +|-..+.+-+..........+..|.+-|.++.|.+.|+ |++.+.|..+..|...-|.
T Consensus 588 qhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 588 QHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred hhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 543 67789999999988665 55578889998888888888888999999999999997 7899999999999999888
Q ss_pred eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
.++..+.... |.++.+|.+.++|+||+.|....||.+
T Consensus 667 siFqskE~Ss--------------------------------------VlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 SIFQSKESSS--------------------------------------VLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeccccCc--------------------------------------ceeeeeccCceEEEecCCCcceEEEEE
Confidence 8776654332 999999999999999999998888875
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=199.18 Aligned_cols=283 Identities=17% Similarity=0.220 Sum_probs=228.7
Q ss_pred hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
.--..+|.||||+.+.+.||.+-.+|.|-||++..+=..... ...+....|.+++|++ +..|
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v-----------------i~g~~drsIE~L~W~e-~~RL 83 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV-----------------IHGPEDRSIESLAWAE-GGRL 83 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEE-----------------EecCCCCceeeEEEcc-CCeE
Confidence 344688999999999999999999999999999875433322 1124466799999995 5567
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE--EeecccCCeEEEEee
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS--TLFGHQSEVLTIDCL 313 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~ 313 (513)
++.+.+|.|.-||+.++++...+....+.|++++.+|.+..++.|+.||.+..++...++... .+....+.|.++.|+
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 788889999999999999999999999999999999999999999999988888887776543 345567899999999
Q ss_pred CCCe-EEEEeCCCcEEEEecCCCeeeE-----Eec----CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 314 RKER-VLTVGRDRSMQLWKVPEESRLV-----FRA----PASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 314 ~~~~-~~~~~~d~~i~iwd~~~~~~~~-----~~~----~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
|++. +++|+.||.|++||...+.... ... ...-|+++.+..++.+++|.+-|+|.+||...+..+..+..
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9986 8899999999999999887654 111 23457788888999999999999999999999988777654
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee-ee
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP-LY 462 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~-~~ 462 (513)
+. .-|.+++..+++.++++++.|+.|..|...+....+.. ..
T Consensus 244 h~-------------------------------------adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~ 286 (691)
T KOG2048|consen 244 HD-------------------------------------ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSR 286 (691)
T ss_pred hh-------------------------------------cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeecc
Confidence 33 33999999999999999999999999998876442222 22
Q ss_pred ecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 463 NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 463 ~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
...|...|.+++..++ .|++| |.|+.|.+=.
T Consensus 287 r~~h~hdvrs~av~~~--~l~sg-G~d~~l~i~~ 317 (691)
T KOG2048|consen 287 RDLHAHDVRSMAVIEN--ALISG-GRDFTLAICS 317 (691)
T ss_pred ccCCcccceeeeeecc--eEEec-ceeeEEEEcc
Confidence 2336788999999887 66666 8888776653
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=195.53 Aligned_cols=263 Identities=17% Similarity=0.307 Sum_probs=204.4
Q ss_pred EeCC-ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcce
Q 010296 177 ASKD-GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-LDRHIHLWDTRIQEH 254 (513)
Q Consensus 177 ~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~ 254 (513)
++.| ..+.+||+.+|.....+.+... ..+| ++..- .+.+++++. ....|.+|.+.....
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~-------------a~~~-----sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~ 73 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYL-------------AQAA-----SLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ 73 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCccc-------------ccch-----hhhhh-chhheeeecccCccccccccCchhh
Confidence 3444 4599999999987766522100 0011 11111 235666654 456899999876655
Q ss_pred eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecC
Q 010296 255 IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVP 333 (513)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~ 333 (513)
.....--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+ .|++++.||.|.+|.+.
T Consensus 74 ~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 74 VVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred hhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 54344467889999999999999999999999999999999999999999999999999987 56699999999999873
Q ss_pred C----------CeeeEEecCCCCeeEEEeecCC---eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCc
Q 010296 334 E----------ESRLVFRAPASSLECCCFISND---EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGK 400 (513)
Q Consensus 334 ~----------~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
. .....+..|.-+|+.+...+.| ++++++.|.++++||+..+..+.++.....
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s-------------- 219 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS-------------- 219 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc--------------
Confidence 2 1123677888899999888765 589999999999999999998888765443
Q ss_pred cccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC---------------cceeeeeecC
Q 010296 401 ISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET---------------KDIQPLYNLP 465 (513)
Q Consensus 401 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~---------------~~~~~~~~~~ 465 (513)
+.++++.|..+.+++|+.+|.|.+.++.... ..+..+. .
T Consensus 220 ------------------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--G 273 (476)
T KOG0646|consen 220 ------------------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--G 273 (476)
T ss_pred ------------------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec--c
Confidence 9999999999999999999999999886542 0111122 2
Q ss_pred ccc--EEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 466 LVG--FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 466 ~~~--~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
|.+ .|+|++++-||..|++| +.||.|++||+..
T Consensus 274 h~~~~~ITcLais~DgtlLlSG-d~dg~VcvWdi~S 308 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSG-DEDGKVCVWDIYS 308 (476)
T ss_pred ccCCcceeEEEEecCccEEEee-CCCCCEEEEecch
Confidence 555 89999999999999999 9999999999753
No 126
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=2.5e-25 Score=187.98 Aligned_cols=307 Identities=19% Similarity=0.344 Sum_probs=218.5
Q ss_pred hhhccCCCeEEEEECC-----CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 154 VLLKHRQSVTAVALSE-----DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
....|+.+|..++|++ .-..++|+|. ..+.+|.......+..+ .. ..-..|....+.++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~l-------q~-------y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLL-------QS-------YADEDHDESFYTCSW 97 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeee-------ee-------ccCCCCCcceEEEEE
Confidence 4557899999999985 2345666664 57888887654422221 00 012246777888888
Q ss_pred cCC----CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEe---
Q 010296 229 SSD----GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTL--- 300 (513)
Q Consensus 229 s~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--- 300 (513)
+-+ ..+||.|+.-|.|+|.|+.++++...+.+|...|+.+.|+|.. +++++++.|.+|++|++++..++..+
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 763 4588999999999999999999999999999999999999976 57889999999999999999998876
Q ss_pred ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-----------------------------EEecCCCCeeEE
Q 010296 301 FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-----------------------------VFRAPASSLECC 350 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-----------------------------~~~~~~~~v~~~ 350 (513)
.+|...|.++.|++++ +++++|.|.+|++|++...... ....|...|.|+
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 5799999999999987 6779999999999999743211 011233344444
Q ss_pred EeecCCeEEEEeCCCCEEEEecC-CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296 351 CFISNDEFLSGSDDGSIELWSLL-RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT 429 (513)
Q Consensus 351 ~~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 429 (513)
.|.- ..+++-+-++.|..|... -.+.+..++.......-+. .+.-....-|....+
T Consensus 258 rw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~----------------------~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 258 RWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG----------------------EFDYPMCDIWFIRFA 314 (385)
T ss_pred HHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeee----------------------EeccCccceEEEEEe
Confidence 4443 246677788899999873 2222222211111100000 010122233455667
Q ss_pred EecCCCEEEEecCCCcEEEEEeCCCCcc-eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 430 VCGGSDLAASGAGNGSVRLWAIESETKD-IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 430 ~s~~~~~l~~g~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
|.|-+++||.|...|.|++||+...... ..++........|...+||.||.+|+.. .+|++|..||...
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v-cdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV-CDDGTVWRWDRVS 384 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE-eCCCcEEEEEeec
Confidence 7788899999999999999999887442 2233333346789999999999999988 8999999998653
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.3e-24 Score=182.41 Aligned_cols=243 Identities=15% Similarity=0.229 Sum_probs=192.0
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
....|.+|.|+|.+..|+++++||++++|++........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 36679999999999999999999999999999887766666 999999999987 4679999999999999999886543
Q ss_pred EeecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe
Q 010296 299 TLFGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~ 377 (513)
+..|..+|.||.+++ .+.+++++.|++|++||.+.............|.++.... ..|++|+.+..|.+||+++...
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC-CEEEEeecCceEEEEEcccccc
Confidence 456999999999987 5789999999999999999755544344444777776643 3688999999999999998764
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC---
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE--- 454 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~--- 454 (513)
...... ......+.|+++-|++.=+++++-||.|.+=.++..
T Consensus 168 ~~q~re-----------------------------------S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 168 PFQRRE-----------------------------------SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred hhhhcc-----------------------------------ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 442221 222234999999998888999999999888666554
Q ss_pred -Ccceeeeee-------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 455 -TKDIQPLYN-------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 455 -~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
.+.. .+.. ....-+|++++|+|-...||+| |.||.|.+||..+..+
T Consensus 213 ~skky-aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg-GsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 213 QSKKY-AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG-GSDGIVNIWDLFNRKR 266 (323)
T ss_pred hhhce-eEEeeecccCCceEEEEeceeEeccccceEEec-CCCceEEEccCcchhh
Confidence 1111 1111 1123589999999999999999 9999999999876544
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.9e-25 Score=183.94 Aligned_cols=286 Identities=11% Similarity=0.121 Sum_probs=206.2
Q ss_pred eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC
Q 010296 162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD 241 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 241 (513)
-.|+.|++.|.+||+|+.||.|.|||+.+...... +.+|..+|++++||++|+.|++++.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhh-------------------hhccccceeEEEecCCCCEeeeecCC
Confidence 78999999999999999999999999998775553 47899999999999999999999999
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccC----CeEEEEeeCCC
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQS----EVLTIDCLRKE 316 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~ 316 (513)
..|.+||+..|.+++.+. ...+|+...|+|.....+ ++-.+..-.+.++..+.....-....+ ...+..|.+.|
T Consensus 87 ~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 999999999999998887 778999999999654433 333444455555554221111111111 11233466666
Q ss_pred -eEEEEeCCCcEEEEecCCCeee-EEecC-CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCee---EEeecCCCccc
Q 010296 317 -RVLTVGRDRSMQLWKVPEESRL-VFRAP-ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPV---YIVKNAHPLLD 389 (513)
Q Consensus 317 -~~~~~~~d~~i~iwd~~~~~~~-~~~~~-~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~ 389 (513)
.+++|...|.+.+++..+..++ .++.. ...|..+.++..|. |+..+.|..|+.|++..--.. ......+.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K--- 242 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK--- 242 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH---
Confidence 5568889999999999988776 23333 36788899998886 779999999999997631100 00000000
Q ss_pred CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeeecCccc
Q 010296 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
+........-.+++||.+|.|+++|+. -..++||.-..+ ..++.+.+. ...
T Consensus 243 --------------------------~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~-kgE 294 (405)
T KOG1273|consen 243 --------------------------LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGT-KGE 294 (405)
T ss_pred --------------------------HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-ceeeeecCC-chh
Confidence 000111122568899999999988874 457999999888 556666542 235
Q ss_pred EEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 469 FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
....|.|+|-...+++- ..|.|++|.+..-
T Consensus 295 ~l~DV~whp~rp~i~si--~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASI--ASGVVYIWAVVQV 324 (405)
T ss_pred heeecccccceeeeeec--cCCceEEEEeecc
Confidence 67889999998877766 6789999987543
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=204.99 Aligned_cols=319 Identities=19% Similarity=0.307 Sum_probs=233.3
Q ss_pred eEEEEECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296 162 VTAVALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239 (513)
Q Consensus 162 V~~~~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 239 (513)
|+++. ||. -+.++.|+..|.+.||++.+++.+.++ .++...|+++.-+|--..+|.|.
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f-------------------~~~~s~IT~ieqsPaLDVVaiG~ 221 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF-------------------QEFFSRITAIEQSPALDVVAIGL 221 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEe-------------------cccccceeEeccCCcceEEEEec
Confidence 77664 453 466899999999999999999999866 56778999999999888999999
Q ss_pred CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEee-cccCCeEEEEeeCCC-
Q 010296 240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTLF-GHQSEVLTIDCLRKE- 316 (513)
Q Consensus 240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~- 316 (513)
.+|+|.+++++.++.+..|+...+.|++++|..||+. |++|+..|.+.+||+...+.+..+. .|.+.|....|.+..
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 9999999999999999999954699999999999976 5567777999999999988877665 788899999998876
Q ss_pred eEEEEeCCCcEEEEecCCCe----ee-EEecCCCCeeEEEee-cCCe-EEEEeCCCCEEEEecCCCCe------------
Q 010296 317 RVLTVGRDRSMQLWKVPEES----RL-VFRAPASSLECCCFI-SNDE-FLSGSDDGSIELWSLLRKKP------------ 377 (513)
Q Consensus 317 ~~~~~~~d~~i~iwd~~~~~----~~-~~~~~~~~v~~~~~~-~~~~-~~~~~~dg~i~iwd~~~~~~------------ 377 (513)
.+++++.|+.+++|-..++. .+ ...+|..+..|+.|. .+++ +++++.|++++.+++.....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 45588899999988665432 22 445788899999998 5565 66889999888887643110
Q ss_pred ----------------eEEeecCC-------------CcccCCC------------Ccc---------------------
Q 010296 378 ----------------VYIVKNAH-------------PLLDGLK------------NFE--------------------- 395 (513)
Q Consensus 378 ----------------~~~~~~~~-------------~~~~~~~------------~~~--------------------- 395 (513)
+..+.... ....... .+.
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 00000000 0000000 000
Q ss_pred -----cCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee---------
Q 010296 396 -----QDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL--------- 461 (513)
Q Consensus 396 -----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~--------- 461 (513)
...+.|.......|...........|..+|+.++...-++.+++++.+|.+.+|++.... .+..+
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGI 540 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeeccCCCccee
Confidence 001111111112222222222346788899999999999999999999999999998752 11000
Q ss_pred -----------------------------eec-CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 462 -----------------------------YNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 462 -----------------------------~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
..+ .|...|++++|||||++|+++ +.|++|++||+.++..
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTGTL 610 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCcce
Confidence 000 477899999999999999999 9999999999988754
No 130
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=212.62 Aligned_cols=240 Identities=22% Similarity=0.312 Sum_probs=176.2
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC----------cCCCeEEEEEec---CCCe--EEEEeC
Q 010296 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG----------HRGPVSCLTFRQ---GTSE--LFSGSF 282 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~---~~~~--l~~~~~ 282 (513)
.|.+.|+++.||+||+|||+|+.||.|+||.+...+....-.+ -.+.+..+..++ .++. .-.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999999999999865332111000 000111111111 0111 112222
Q ss_pred CCcEEEEeCC----CCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC--
Q 010296 283 DRTVKIWNAE----DRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-- 356 (513)
Q Consensus 283 dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-- 356 (513)
... .+.... ..+++..+.+|.+.|..+.|+.++.||+++.|.+|++|++....++....|...|+|++|+|-.
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 222 222222 2356778899999999999999999999999999999999999999999999999999999965
Q ss_pred eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCE
Q 010296 357 EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDL 436 (513)
Q Consensus 357 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 436 (513)
+|++|+-||.|+||++...+.+.-.... .-|++++|+|+|++
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--------------------------------------~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR--------------------------------------DLITAVCYSPDGKG 465 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh--------------------------------------hhheeEEeccCCce
Confidence 5999999999999999887766544322 12999999999999
Q ss_pred EEEecCCCcEEEEEeCCCCcceeeeeecCc------ccEEEEEEeecCCC-EEEEEecCCCcccccccC
Q 010296 437 AASGAGNGSVRLWAIESETKDIQPLYNLPL------VGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 437 l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~------~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~ 498 (513)
.++|+.+|..++|++... +.........+ ...|+.+.|.|... .++++ +.|.+|||+|..
T Consensus 466 avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~ 532 (712)
T KOG0283|consen 466 AVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGR 532 (712)
T ss_pred EEEEEeccEEEEEEccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEecc
Confidence 999999999999999876 22221111111 23799999998765 35555 689999999983
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=198.93 Aligned_cols=293 Identities=16% Similarity=0.218 Sum_probs=209.0
Q ss_pred cCCCeEE--EEECC---CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 158 HRQSVTA--VALSE---DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 158 h~~~V~~--~~~s~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
|.-++.- ..|++ ....|+.+..+|.|.++|....... .... .......|...|..+.|-|..
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr----~ee~---------~lk~~~aH~nAifDl~wapge 112 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR----LEER---------QLKKPLAHKNAIFDLKWAPGE 112 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc----hhhh---------hhcccccccceeEeeccCCCc
Confidence 4444443 66665 3457889999999999998654322 0000 011346899999999999976
Q ss_pred CEEEEEeCCCcEEEEeCCCcceeee--ccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCce-------------
Q 010296 233 RYLASGGLDRHIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAY------------- 296 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------- 296 (513)
..|++++.|.++++||+.+.+++.. +.+|.+.|.+++|.|... .|++|+.||.|.|||++-...
T Consensus 113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 7899999999999999999998877 889999999999999665 577999999999999863220
Q ss_pred --------------eEEeecccCC----eEEEEeeCCCeEEEEeC-CCcEEEEecCCCeeeE---------EecC---CC
Q 010296 297 --------------ISTLFGHQSE----VLTIDCLRKERVLTVGR-DRSMQLWKVPEESRLV---------FRAP---AS 345 (513)
Q Consensus 297 --------------~~~~~~~~~~----v~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~---------~~~~---~~ 345 (513)
+.....+... |+.+.|-.+..|++++. |+.|+|||++...... +..+ ..
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~ 272 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV 272 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence 0111123333 44555655668887776 9999999998765432 1122 33
Q ss_pred CeeEEEeecCC-eEEEEeCCCCEEEEecCCCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296 346 SLECCCFISND-EFLSGSDDGSIELWSLLRKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY 422 (513)
Q Consensus 346 ~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 422 (513)
.+.++.....| ++++.+.|+.|++|++.+.. ++..+.... ..
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-----------------------------------~~ 317 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL-----------------------------------NS 317 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc-----------------------------------cc
Confidence 56677776666 46777789999999997753 222222110 01
Q ss_pred ceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCE-EEEEecCCCcccccccCCCc
Q 010296 423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQF-LIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~~~~~~dg~v~~W~~~~~~ 501 (513)
..-..-..+|++.+|++|+.|...++|.+.+.......+.. |.-.|++|+|.|..-. ++++ ++|.++++|++..+.
T Consensus 318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATC-SDDFRVKIWRLSNGL 394 (720)
T ss_pred eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceee-ccCcceEEEeccCch
Confidence 11334457899999999999999999999988665555554 8888999999987544 4555 999999999986543
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3.2e-23 Score=192.30 Aligned_cols=269 Identities=9% Similarity=0.059 Sum_probs=193.0
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeE-EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKG-FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
|+......+..+..|. .+.+++|+|+++.+ ++++.++.|++||+.+++....+ ..+ ..
T Consensus 16 ~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------------------~~~-~~ 74 (300)
T TIGR03866 16 IDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-------------------PSG-PD 74 (300)
T ss_pred EECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-------------------cCC-CC
Confidence 3444444555665554 46789999999977 56778899999999987765433 112 22
Q ss_pred EEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-cEEEEeCCCCceeEEe
Q 010296 223 ILALAVSSDGRYLASG-GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-TVKIWNAEDRAYISTL 300 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 300 (513)
+..++|+|+++.++++ +.++.|++||+.+.+.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+++.+..+
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 4678999999977654 5689999999998887777753 34568899999999999888765 5678899888776554
Q ss_pred ecccCCeEEEEeeCCCeEE-EE-eCCCcEEEEecCCCeeeEE-ecC-------CCCeeEEEeecCCe--EEEEeCCCCEE
Q 010296 301 FGHQSEVLTIDCLRKERVL-TV-GRDRSMQLWKVPEESRLVF-RAP-------ASSLECCCFISNDE--FLSGSDDGSIE 368 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~iwd~~~~~~~~~-~~~-------~~~v~~~~~~~~~~--~~~~~~dg~i~ 368 (513)
. ....+.++.|++++..+ ++ ..++.|++||+.+.+.... ..+ ......++|+|++. +++.+.++.|.
T Consensus 154 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 154 L-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred E-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 3 33455788999988644 44 3589999999998765422 111 11234678999986 34455677899
Q ss_pred EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe-cCCCcEE
Q 010296 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG-AGNGSVR 447 (513)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g-~~dg~v~ 447 (513)
+||+.+++.+..+...+ .+.+++|+|+|++|+++ +.+|.|+
T Consensus 233 v~d~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 233 VVDAKTYEVLDYLLVGQ--------------------------------------RVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred EEECCCCcEEEEEEeCC--------------------------------------CcceEEECCCCCEEEEEcCCCCeEE
Confidence 99999888766553221 27899999999999886 4689999
Q ss_pred EEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296 448 LWAIESETKDIQPLYNLPLVGFVNSLAFAK 477 (513)
Q Consensus 448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp 477 (513)
+||+.++ ..+..+. .....+.++|+|
T Consensus 275 v~d~~~~-~~~~~~~---~~~~~~~~~~~~ 300 (300)
T TIGR03866 275 VIDVAAL-KVIKSIK---VGRLPWGVVVRP 300 (300)
T ss_pred EEECCCC-cEEEEEE---cccccceeEeCC
Confidence 9999987 3334443 345568888775
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=182.00 Aligned_cols=242 Identities=14% Similarity=0.226 Sum_probs=190.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
..|+.|++.|.+||+|+.+|.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999989999999999999999999999999999999999999999998887
Q ss_pred ccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeeeEEecCC-----CCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296 303 HQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRLVFRAPA-----SSLECCCFISNDE-FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 303 ~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~ 374 (513)
...+|+...|+|. +.++++-.+..-.+.++.......+.... ....+..|.+.|. +++|...|.+.+++..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 7899999999994 45666656665666666543332221111 1122335677775 77999999999999999
Q ss_pred CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.+++..++.... ..|..+.|+..|++|++-+.|..||.|++..-
T Consensus 185 ~e~vas~rits~------------------------------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 185 LECVASFRITSV------------------------------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred heeeeeeeechh------------------------------------eeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 998888764331 22889999999999999999999999998732
Q ss_pred C-----cceeeeee---cCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 455 T-----KDIQPLYN---LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 455 ~-----~~~~~~~~---~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
. ..+.+... .-....=.+++||.+|.|+++++...+.++||....+.
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc
Confidence 0 11111111 11233446789999999999998888999999876654
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.3e-24 Score=177.33 Aligned_cols=264 Identities=16% Similarity=0.240 Sum_probs=190.2
Q ss_pred hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--CCC
Q 010296 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--DGR 233 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~ 233 (513)
.+|.+-|+|+.|.+.|+.+|||+.|++|+|||.......... ......|.+.|..+.|.+ -|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCccccc
Confidence 479999999999999999999999999999997554432211 123468999999999976 589
Q ss_pred EEEEEeCCCcEEEEeCCC---------cceeeeccCcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCCcee-----
Q 010296 234 YLASGGLDRHIHLWDTRI---------QEHIQAFPGHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDRAYI----- 297 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~----- 297 (513)
.+|+++.|+++.||.-.. .....++......|+.++|.|. |-.|++++.||.|+||+.-....+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997421 1234456667789999999984 556899999999999987543221
Q ss_pred -EEee-------cccCCeEEEEeeCC---CeEEEEeCCC------cEEEEecCCCeee-----EEecCCCCeeEEEeecC
Q 010296 298 -STLF-------GHQSEVLTIDCLRK---ERVLTVGRDR------SMQLWKVPEESRL-----VFRAPASSLECCCFISN 355 (513)
Q Consensus 298 -~~~~-------~~~~~v~~~~~~~~---~~~~~~~~d~------~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~ 355 (513)
..+. .+..+..|+.|+|. ..+++.+.+. .++||........ .+..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 1121 35667889999974 3455555544 8899987655421 45688899999999997
Q ss_pred C-----eEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc-CCCCCcceEEEE
Q 010296 356 D-----EFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY-HSSSAYSWVSSV 428 (513)
Q Consensus 356 ~-----~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 428 (513)
- .+++++.|| |+||.+.... ++..-....+ ...+.+....+ ....|.+.|..+
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~-------------------~~~~~l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAP-------------------DLMTDLPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCC-------------------CCccccceEEeeeccCCCCceEEE
Confidence 3 277999999 9999987532 1110000000 00000111111 126788889999
Q ss_pred EEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 429 TVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 429 ~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.|+-.|..|++.+.||.||+|..+-.
T Consensus 295 ~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 295 RWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEeeeeeEEeecCCCceeeehhhhhh
Confidence 99999999999999999999987543
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=192.29 Aligned_cols=336 Identities=15% Similarity=0.213 Sum_probs=235.3
Q ss_pred cCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccE
Q 010296 144 QKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHI 223 (513)
Q Consensus 144 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (513)
|++....+...+....++|.+++.+|.+..++.|+.||.+..++...+...... .+....+.|
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-----------------~l~rq~sRv 157 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-----------------SLMRQKSRV 157 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-----------------ecccccceE
Confidence 667777777788888999999999999999999999998888888777655432 233446889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-------cC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF-------PG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
.+++|+|++..|++|+.||.|++||..++..+... .. ...-|+++.|-.+ ..|++|..-|+|.+||...+.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc
Confidence 99999999999999999999999999988776522 11 2335788888755 469999999999999999999
Q ss_pred eeEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCee-----eEEecCCCCeeEEEeecCCeEEEEeCCCCEEE
Q 010296 296 YISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESR-----LVFRAPASSLECCCFISNDEFLSGSDDGSIEL 369 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~i 369 (513)
.+..+..|...|.+++..++ +++++++.|+.|..|...+... .....|...+.+++..++ .+++|+.|..+.+
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAI 315 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEE
Confidence 99999999999999999997 5888999999999999877643 245678889999999887 7789999999888
Q ss_pred EecCCCCeeEEe-ecCCCcccCCCCcccCcCccccccCCCCC------------CCCCCc--CCCCCcceEEEEEEecCC
Q 010296 370 WSLLRKKPVYIV-KNAHPLLDGLKNFEQDEGKISNGHSENGN------------LNPGSY--HSSSAYSWVSSVTVCGGS 434 (513)
Q Consensus 370 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~--~~~~~~~~i~~~~~s~~~ 434 (513)
-.....+..... +..++. ............+..+...... .....+ ........|.+.++||+|
T Consensus 316 ~~s~~~~~~~h~~~~~~p~-~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg 394 (691)
T KOG2048|consen 316 CSSREFKNMDHRQKNLFPA-SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDG 394 (691)
T ss_pred ccccccCchhhhccccccc-cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCC
Confidence 665542211111 111110 0001111111111111111100 000000 012234458999999999
Q ss_pred CEEEEecCCCcEEEEEeCCCC-------------------------------------------------cceeeeeecC
Q 010296 435 DLAASGAGNGSVRLWAIESET-------------------------------------------------KDIQPLYNLP 465 (513)
Q Consensus 435 ~~l~~g~~dg~v~vwd~~~~~-------------------------------------------------~~~~~~~~~~ 465 (513)
++|+.+.-. .++||.+.... +.+..+...+
T Consensus 395 ~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~ 473 (691)
T KOG2048|consen 395 NLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQA 473 (691)
T ss_pred CEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccccc
Confidence 999988733 34555443310 0000000001
Q ss_pred cccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 466 LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 466 ~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
....|+.+..||+|+|||+. +..|.|.+|++.+..
T Consensus 474 ~~~~I~~l~~SsdG~yiaa~-~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 474 KCPSISRLVVSSDGNYIAAI-STRGQIFVYNLETLE 508 (691)
T ss_pred CCCcceeEEEcCCCCEEEEE-eccceEEEEEcccce
Confidence 23578999999999999999 799999999987654
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=7.4e-24 Score=195.94 Aligned_cols=352 Identities=16% Similarity=0.225 Sum_probs=239.0
Q ss_pred CcccchhhhhccCCCeEEEEECCCCC---eEEEEeCCceEEEEeCCCCcccccc--------CCChhhhccCCC----CC
Q 010296 147 EATDEFRVLLKHRQSVTAVALSEDDS---KGFSASKDGSILHWDVSSGKGVKYL--------WPSEEVLKSHGA----KD 211 (513)
Q Consensus 147 ~~~~~~~~~~~h~~~V~~~~~s~~~~---~l~t~~~dg~v~iwd~~~~~~~~~~--------~~~~~~~~~~~~----~~ 211 (513)
........+.||.+.|.+|+|...+. +||++|.|..||||.+.-+...... ............ ..
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 35566778999999999999987554 7889999999999998644422200 000000000000 11
Q ss_pred CCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc--e-----eeeccCcCCCeEEEEEecCCCeEEEEeCCC
Q 010296 212 PQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE--H-----IQAFPGHRGPVSCLTFRQGTSELFSGSFDR 284 (513)
Q Consensus 212 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 284 (513)
....+.+|..-|+++.|+|.+..|++++.|.++.+|...... - +..+.+.........|+|+++.+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 112456999999999999999999999999999999865442 1 223334556789999999999999999999
Q ss_pred cEEEEeCCCC---ceeEEeecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee-----EEecCCCCeeEEEeec-
Q 010296 285 TVKIWNAEDR---AYISTLFGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL-----VFRAPASSLECCCFIS- 354 (513)
Q Consensus 285 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~- 354 (513)
..++|..... .....+.+|...|..++|.|.|. +++++.|.+-++|-.-..+.. .-..|...++|+++.+
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983332 22345678999999999999875 559999999999876522211 2345778899999998
Q ss_pred CCeEEEEeCCCCEEEEecCCC--CeeEEeec-----C--CCcccCCCCcccCcCccccccCCCCC---------------
Q 010296 355 NDEFLSGSDDGSIELWSLLRK--KPVYIVKN-----A--HPLLDGLKNFEQDEGKISNGHSENGN--------------- 410 (513)
Q Consensus 355 ~~~~~~~~~dg~i~iwd~~~~--~~~~~~~~-----~--~~~~~~~~~~~~~~~~i~~~~~~~~~--------------- 410 (513)
+-+|++|.....+|+|+.... +.+..+.. . .+....+..+..+...+.......|.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 556999999999999987542 00000000 0 00000111111111111100000000
Q ss_pred ---------------CCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-----CcEEEEEeCCCCcceeeeeecCcccEE
Q 010296 411 ---------------LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-----GSVRLWAIESETKDIQPLYNLPLVGFV 470 (513)
Q Consensus 411 ---------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~v 470 (513)
+.+..-...+|...|++++.+|+|+++|+++.. ..|+||+..+. ...+.+.. |.-.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~--HsLTV 575 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG--HSLTV 575 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc--cceEE
Confidence 001111126788889999999999999999754 46999999887 23333433 88899
Q ss_pred EEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 471 NSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
+.++|||||+||++. +.|.++.+|.......
T Consensus 576 T~l~FSpdg~~LLsv-sRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSV-SRDRTVSLYEVQEDIK 606 (764)
T ss_pred EEEEECCCCcEEEEe-ecCceEEeeeeecccc
Confidence 999999999999999 9999999998755443
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=7.5e-24 Score=195.92 Aligned_cols=297 Identities=14% Similarity=0.225 Sum_probs=228.2
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR 233 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 233 (513)
.+.||.+.|+++.|+|.+..|++++.|.++.+|...+...+..- . ++ .+...+.....+...|+|+++
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~---~--vR-------lGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD---V--VR-------LGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE---E--EE-------eecccccccceeeEEEcCCCC
Confidence 45699999999999999999999999999999998765433211 0 00 011224456689999999999
Q ss_pred EEEEEeCCCcEEEEeCCCc---ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc----eeEEeecccCC
Q 010296 234 YLASGGLDRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA----YISTLFGHQSE 306 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~ 306 (513)
.+++-+..|..++|..... .....+.+|...|..+.|+|.|.+|++.+.|.+-+++-.-..+ .+....-|...
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 9999999999999983322 2344567899999999999999999999999999998764222 23334558888
Q ss_pred eEEEEeeC-CCeEEEEeCCCcEEEEecCCC-------------------------------------------ee----e
Q 010296 307 VLTIDCLR-KERVLTVGRDRSMQLWKVPEE-------------------------------------------SR----L 338 (513)
Q Consensus 307 v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~-------------------------------------------~~----~ 338 (513)
++|+++-+ +-+|+++.....+++|+.... .. .
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 99999988 678889999999999975310 00 0
Q ss_pred ------------------------------EEecCCCCeeEEEeecCCeEE-EEeCC-----CCEEEEecCCCCeeEEee
Q 010296 339 ------------------------------VFRAPASSLECCCFISNDEFL-SGSDD-----GSIELWSLLRKKPVYIVK 382 (513)
Q Consensus 339 ------------------------------~~~~~~~~v~~~~~~~~~~~~-~~~~d-----g~i~iwd~~~~~~~~~~~ 382 (513)
.+.+|...|.+++.+|++.|+ +++.. ..|++|+..+....+.+
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L- 568 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL- 568 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-
Confidence 022467789999999999754 55543 45899999888777766
Q ss_pred cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee-
Q 010296 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL- 461 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~- 461 (513)
..|.-.|+.|+|||+|++|++.+.|.++.+|........-..+
T Consensus 569 ------------------------------------~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa 612 (764)
T KOG1063|consen 569 ------------------------------------EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA 612 (764)
T ss_pred ------------------------------------cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc
Confidence 3444559999999999999999999999999986542211111
Q ss_pred eecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 462 YNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 462 ~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
..-.|..-|.++.|+|++.+++++ +.|.+|.+|.....
T Consensus 613 ~~k~HtRIIWdcsW~pde~~FaTa-SRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 613 CLKAHTRIIWDCSWSPDEKYFATA-SRDKKVKVWEEPDL 650 (764)
T ss_pred cccccceEEEEcccCcccceeEEe-cCCceEEEEeccCc
Confidence 123488899999999999999999 99999999987655
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-23 Score=183.26 Aligned_cols=241 Identities=23% Similarity=0.368 Sum_probs=187.2
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCcce---ee------------------eccCcCCCeEEEEEecCC
Q 010296 223 ILALAVSS-------DGRYLASGGLDRHIHLWDTRIQEH---IQ------------------AFPGHRGPVSCLTFRQGT 274 (513)
Q Consensus 223 v~~~~~s~-------~~~~l~s~~~dg~i~vwd~~~~~~---~~------------------~~~~~~~~v~~~~~~~~~ 274 (513)
..|++|.. .|+++|.|+.+..|.|||+.-... .. .-.+|+..|.+|+|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 45666643 368999999999999999752211 11 123588889999998754
Q ss_pred -CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEE
Q 010296 275 -SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECC 350 (513)
Q Consensus 275 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~ 350 (513)
+.|++||.|.+|++||+.++++...+..|...|.++.|+|.. .+++|+.|++|.+.|.+..... ....-.+.|..+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 468899999999999999999999999999999999999953 6779999999999999853322 334455678899
Q ss_pred EeecCCe--EEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEE
Q 010296 351 CFISNDE--FLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSS 427 (513)
Q Consensus 351 ~~~~~~~--~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 427 (513)
+|.|... |+++..||+|+-+|++.. +++.+++ .|...|.+
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-------------------------------------AHd~~ISg 378 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-------------------------------------AHDDEISG 378 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEE-------------------------------------eccCCcce
Confidence 9998764 889999999999999986 8888875 44445999
Q ss_pred EEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 428 VTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 428 ~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
|++++.- .+|+|++.|+.|++|++............+ ..+...|.++.|+-.++++.+|..+.+++||+....
T Consensus 379 l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 379 LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred EEecCCCCcceeeccccceEEEEeecCCCCcccccccc-cccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 9998754 578999999999999997652222211111 245578889999988777666888899999987764
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7.5e-26 Score=209.97 Aligned_cols=253 Identities=23% Similarity=0.414 Sum_probs=212.4
Q ss_pred CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010296 169 EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD 248 (513)
Q Consensus 169 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 248 (513)
|.+.+++.....-.+++|+... +..|...|.++..-..++.+++|+.+..+-+|.
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~-------------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~ 56 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE-------------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWA 56 (825)
T ss_pred Ccccccceeeeeeccccccchh-------------------------hhhhhhhhceeeeeccceeeccCCCceeecccc
Confidence 3444555666666778888663 346777888888877889999999999999999
Q ss_pred CCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcE
Q 010296 249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSM 327 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i 327 (513)
+..-..+..|.+|..+|.++.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+. .++.|..+
T Consensus 57 i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 57 IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDL 136 (825)
T ss_pred ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccc
Confidence 88777788899999999999999999999999999999999999999999999999999999999988555 78889999
Q ss_pred EEEecCCCee-eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296 328 QLWKVPEESR-LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH 405 (513)
Q Consensus 328 ~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 405 (513)
++||++...+ ..+.+|...+.++.|+|+|. ++.|+.|.+++|||+..|+.+..|..
T Consensus 137 ~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~---------------------- 194 (825)
T KOG0267|consen 137 KIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS---------------------- 194 (825)
T ss_pred eehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc----------------------
Confidence 9999995544 47777888899999999996 66888899999999999998888753
Q ss_pred CCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296 406 SENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 485 (513)
|...+..+.|+|..-++++|+.|++|++||+.+. ..+.... +....|.+++|+|++..+++|
T Consensus 195 ---------------~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~--~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 195 ---------------HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGK--PETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ---------------ccccccccccCchhhhhccCCCCceeeeecccee-EEeeccC--CccCCceeeeecCCceeeecC
Confidence 3344888999999999999999999999999865 2222222 236779999999999988887
Q ss_pred e
Q 010296 486 V 486 (513)
Q Consensus 486 ~ 486 (513)
.
T Consensus 257 ~ 257 (825)
T KOG0267|consen 257 E 257 (825)
T ss_pred c
Confidence 3
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=9.3e-26 Score=209.35 Aligned_cols=236 Identities=19% Similarity=0.326 Sum_probs=208.7
Q ss_pred hhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 153 RVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
+.+..|...|.|+..-..++.+++|+.|..+.+|.+.....+. .+.+|..+|.+|.|++..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E 82 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSE 82 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcch
Confidence 4566899999999997788999999999999999987655443 347999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEe
Q 010296 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDC 312 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 312 (513)
.+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+.+.|+.|+.+++||++...|...+.+|...+..+.|
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l 162 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL 162 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred eCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCccc
Q 010296 313 LRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLD 389 (513)
Q Consensus 313 ~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 389 (513)
+|+|+++ .++.|..++|||+..++.. .|..|...+..+.|+|... ++.|+.|++|++||+.+...+......
T Consensus 163 sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~----- 237 (825)
T KOG0267|consen 163 SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE----- 237 (825)
T ss_pred cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----
Confidence 9999766 7778899999999988877 5677899999999999886 569999999999999887766655432
Q ss_pred CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG 444 (513)
Q Consensus 390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg 444 (513)
...|.+++|+|++..+++|....
T Consensus 238 --------------------------------~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 238 --------------------------------TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --------------------------------cCCceeeeecCCceeeecCchhh
Confidence 22399999999999999987653
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6e-25 Score=205.60 Aligned_cols=242 Identities=18% Similarity=0.253 Sum_probs=192.7
Q ss_pred eEEEEECC-CCCeEEEEeCCceEEEEeCCCC---ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEE
Q 010296 162 VTAVALSE-DDSKGFSASKDGSILHWDVSSG---KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLA 236 (513)
Q Consensus 162 V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~ 236 (513)
+..|.|+. +.++|||++..|.|.+||+... +.+. .+..|...++++.|++. ..+|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~ili 150 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNILI 150 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEEE
Confidence 44566664 4689999999999999999862 2222 34789999999999984 56899
Q ss_pred EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeC
Q 010296 237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLR 314 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~ 314 (513)
+|+.||+|++||++..+...++.+....|..++|+|. +..++++...|.+++||++.. ++...+..|.++|.|+.|+|
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP 230 (839)
T ss_pred ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC
Confidence 9999999999999999999999999999999999995 567889999999999999874 56778889999999999999
Q ss_pred CCe-EEEEeCCCcEEEEecCCCee--eEEecCCCCeeEEEeecCCe--EEEEe--CCCCEEEEecCCCCeeEEeecCCCc
Q 010296 315 KER-VLTVGRDRSMQLWKVPEESR--LVFRAPASSLECCCFISNDE--FLSGS--DDGSIELWSLLRKKPVYIVKNAHPL 387 (513)
Q Consensus 315 ~~~-~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~--~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (513)
++. |++||.|+.|+||++.+... ........++.++.|-|... |++++ .|-.|+|||++..-..+.....|
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-- 308 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-- 308 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--
Confidence 764 55999999999999986543 34455667899999999874 66554 57889999998765443333222
Q ss_pred ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcce
Q 010296 388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDI 458 (513)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~ 458 (513)
...++.++|-. +...|.+++.||+|..-.+++...++
T Consensus 309 ----------------------------------~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pi 346 (839)
T KOG0269|consen 309 ----------------------------------TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPI 346 (839)
T ss_pred ----------------------------------CccccceeccCCCceeeEeecCccHHHHhhhhcccChh
Confidence 23388888865 45688899999998887777664433
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.6e-24 Score=189.28 Aligned_cols=260 Identities=16% Similarity=0.222 Sum_probs=208.3
Q ss_pred eEEEEECCCCCeEEE--EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296 162 VTAVALSEDDSKGFS--ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239 (513)
Q Consensus 162 V~~~~~s~~~~~l~t--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 239 (513)
|+++.|+.... |++ .+.|..+++|.-...... + |. .-......-.|++......|+++|+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~--V--------------p~-~~k~~gd~~~Cv~~~s~S~y~~sgG 98 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPE--V--------------PR-VRKLTGDNAFCVACASQSLYEISGG 98 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCc--c--------------ce-eeccccchHHHHhhhhcceeeeccC
Confidence 89999987654 444 456888999975543110 0 00 0001112344555555568999999
Q ss_pred CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC-eEEEEeeCCCe-
Q 010296 240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE-VLTIDCLRKER- 317 (513)
Q Consensus 240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~- 317 (513)
..+.|+|||++...+.+.+++|...|+++.++....||++++..|-|.|..+.++.....|....+. |.-+.|++..+
T Consensus 99 ~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 99 QSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred cCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence 9999999999988888899999999999999999999999999999999999999888777655444 55888998664
Q ss_pred -EEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296 318 -VLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK 392 (513)
Q Consensus 318 -~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 392 (513)
|.+++.+|.|.+||+.....+ ....|..+...++|+|.+. |++.+.|..|.+||....+....+...++
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P------ 252 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP------ 252 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC------
Confidence 348889999999999887766 4567888999999999874 77999999999999998877777765555
Q ss_pred CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296 393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS 472 (513)
Q Consensus 393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 472 (513)
.+.++|+++|.+|++|+..|.|..||++....++..+.. |...|++
T Consensus 253 --------------------------------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa--h~~sVt~ 298 (673)
T KOG4378|consen 253 --------------------------------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA--HDASVTR 298 (673)
T ss_pred --------------------------------cceeeecCCceEEEeecCCceEEEEecccCCCCceEeee--cccceeE
Confidence 889999999999999999999999999998777777765 7788999
Q ss_pred EEeecCC
Q 010296 473 LAFAKSG 479 (513)
Q Consensus 473 v~~sp~~ 479 (513)
|+|-|.-
T Consensus 299 vafq~s~ 305 (673)
T KOG4378|consen 299 VAFQPSP 305 (673)
T ss_pred EEeeecc
Confidence 9998864
No 143
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=193.75 Aligned_cols=290 Identities=18% Similarity=0.232 Sum_probs=220.9
Q ss_pred eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC----------
Q 010296 162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD---------- 231 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------- 231 (513)
..++.|+|....|.+.-.|..++|||+..-..+... ....-|...|+.+.--|-
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~----------------~s~lyHS~ciW~Ve~~p~nv~~~~~acl 390 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC----------------SSMLYHSACIWDVENLPCNVHSPTAACL 390 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccce----------------eeeeeccceeeeeccccccccCcccccC
Confidence 356789999999999999999999999875543211 123356666776665441
Q ss_pred -CCEEEEEeCCCcEEEEeCCCcceeeec-------------------------------------cCcCCCeEEEEEecC
Q 010296 232 -GRYLASGGLDRHIHLWDTRIQEHIQAF-------------------------------------PGHRGPVSCLTFRQG 273 (513)
Q Consensus 232 -~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~ 273 (513)
...|++|+.|++|++|++..+..-..+ -.....+.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 135899999999999998752110000 012347899999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC---C-eEEEEeCCCcEEEEecCCCeee--EEecCCCCe
Q 010296 274 TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK---E-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSL 347 (513)
Q Consensus 274 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v 347 (513)
+++|++|..-|+|+||++..-+....+..|...|.|+.|+.. . .|++++.|..|++||+..+-.+ .+..|...|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 999999999999999999998888889999999999999863 2 4558999999999999776544 677889999
Q ss_pred eEEEeecCC---eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296 348 ECCCFISND---EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424 (513)
Q Consensus 348 ~~~~~~~~~---~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
+++.|.-+| ++++++.|..|.+--.........+..++. ......
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~--------------------------------t~~ktT 598 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ--------------------------------TLSKTT 598 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceecccccc--------------------------------ccccce
Confidence 999998877 388999998876543332222222222211 223345
Q ss_pred EEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 425 VSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 425 i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
+..++..|..+++++++.|..|+||++.++ +..+.+... .|.+....|...|.|-||+++ ..|.+|.++|...++
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atS-csdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATS-CSDKTLCFVDFVSGE 674 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEe-ecCCceEEEEeccch
Confidence 999999999999999999999999999998 445555443 356888889999999999999 678899999987664
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.2e-23 Score=171.41 Aligned_cols=247 Identities=17% Similarity=0.304 Sum_probs=185.3
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc----ceeeeccCcCCCeEEEEEec--CCCeEEEEeCCCcEEEE
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ----EHIQAFPGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIW 289 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 289 (513)
..+|..-|+++.|.+.|+.+|+|+.|++|+|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4578899999999999999999999999999996533 45667888999999999965 47889999999999999
Q ss_pred eCCC---------CceeEEeecccCCeEEEEeeCC--C-eEEEEeCCCcEEEEecCCCeeeE--------------EecC
Q 010296 290 NAED---------RAYISTLFGHQSEVLTIDCLRK--E-RVLTVGRDRSMQLWKVPEESRLV--------------FRAP 343 (513)
Q Consensus 290 d~~~---------~~~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~d~~i~iwd~~~~~~~~--------------~~~~ 343 (513)
.-.. -....++......|+.+.|.|. | .+++++.||.++||+......+. ...+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 1124456677889999999994 4 67799999999999876543221 1124
Q ss_pred CCCeeEEEeecCCe----EEEEeCC-----CCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCC
Q 010296 344 ASSLECCCFISNDE----FLSGSDD-----GSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNP 413 (513)
Q Consensus 344 ~~~v~~~~~~~~~~----~~~~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 413 (513)
..+..|+.|+|... |++|+.+ +.+.||...... ....+..
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~------------------------------ 218 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE------------------------------ 218 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh------------------------------
Confidence 56778899987642 5566654 478888765543 1111110
Q ss_pred CCcCCCCCcceEEEEEEecCC----CEEEEecCCCcEEEEEeCCC----------------Ccceeeeeec-CcccEEEE
Q 010296 414 GSYHSSSAYSWVSSVTVCGGS----DLAASGAGNGSVRLWAIESE----------------TKDIQPLYNL-PLVGFVNS 472 (513)
Q Consensus 414 ~~~~~~~~~~~i~~~~~s~~~----~~l~~g~~dg~v~vwd~~~~----------------~~~~~~~~~~-~~~~~v~~ 472 (513)
+ ..+..+|+.|+|.|+- .+||+++.|| |+||++... .-.+..+..+ .|.+.|..
T Consensus 219 --L--~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 219 --L--PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred --c--CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence 0 4556679999999953 5899999999 999999841 0122223322 38899999
Q ss_pred EEeecCCCEEEEEecCCCcccccccC
Q 010296 473 LAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 473 v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
+.|+-.|..|+++ |+||+||+|...
T Consensus 294 v~wNmtGtiLsSt-GdDG~VRLWkan 318 (361)
T KOG2445|consen 294 VRWNMTGTILSST-GDDGCVRLWKAN 318 (361)
T ss_pred EEEeeeeeEEeec-CCCceeeehhhh
Confidence 9999999999888 999999999644
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=198.60 Aligned_cols=250 Identities=12% Similarity=0.175 Sum_probs=202.5
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
..|....+.|+|.|+|.+|++++.||.|++|+..+. ....++..+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 478888999999999999999999999999997766 3334444477777777764 4589999999999999999988
Q ss_pred eeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~ 372 (513)
.-..+....-++++++++.+|.++ .|+.|-.|++.++..... ..+++|..+|.++.++|++. |++.+.||.|+||++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 766666678889999999988655 777888999999977655 47899999999999999997 668889999999999
Q ss_pred CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
.++....++....+... ......++.++|+|+|..|+..+.|+.|++|+..
T Consensus 168 ~~~~~~~tl~~v~k~n~-----------------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNE-----------------------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred ccchhhhhcccCCcccc-----------------------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 99988877764332210 0112338899999998888888889999999999
Q ss_pred CCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 453 SETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
........... .+...+.+++|+|+|+|||++ +.+|.|.|||+.+
T Consensus 219 ~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs-~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 219 GWELQFKLRDK-LSSSKFSDLQWSPNGKYIAAS-TLDGQILVWNVDT 263 (933)
T ss_pred Cceeheeeccc-ccccceEEEEEcCCCcEEeee-ccCCcEEEEeccc
Confidence 88444333333 234459999999999999999 9999999999984
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=179.09 Aligned_cols=216 Identities=21% Similarity=0.322 Sum_probs=170.5
Q ss_pred hccCCCeEEEEECCCC--CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-C
Q 010296 156 LKHRQSVTAVALSEDD--SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-G 232 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~ 232 (513)
.+|.+.|+.+..++-+ .+.++-+..|.|.||++...- ..+ .............|...+.+|...=+.|+|||- .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l-~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NAL-SEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhh-cCccccccccccCceEEecccCccceeeecccccc
Confidence 3688888888888754 456677889999999986422 111 111122222445677788899999999999993 3
Q ss_pred CEEEEEeCCCcEEEEeCCCccee---eeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCC---ceeEEeecccC
Q 010296 233 RYLASGGLDRHIHLWDTRIQEHI---QAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDR---AYISTLFGHQS 305 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 305 (513)
..|++|..-+.|++|...++.-. ..|.+|+..|..++|+|.. ..|++|+.||+|+|||++.+ .++.+ +.|.+
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s 303 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS 303 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence 35888988899999999887643 4567799999999999965 46889999999999999987 33443 78999
Q ss_pred CeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeee----EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCC
Q 010296 306 EVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRL----VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRK 375 (513)
Q Consensus 306 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~ 375 (513)
.|+.|.|+.... |++|+.+|+++|||++.-+.- .+..|..+|+++.|+|.. .|++++.|.+|.|||+..-
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999998765 668999999999999875543 788999999999999975 4889999999999998754
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.4e-22 Score=168.95 Aligned_cols=225 Identities=20% Similarity=0.320 Sum_probs=179.3
Q ss_pred CCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcc------------ee---eeccCcCCCeEEEEEecC-CCeE
Q 010296 215 RATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQE------------HI---QAFPGHRGPVSCLTFRQG-TSEL 277 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~------------~~---~~~~~~~~~v~~~~~~~~-~~~l 277 (513)
....|.+.|.++...+ .|+++++|+.||.|.|||++... ++ ..-.+|...|..+.|-|- ...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467889999999988 68999999999999999987543 10 112358889999999984 4567
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC---CeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEe
Q 010296 278 FSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK---ERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCF 352 (513)
Q Consensus 278 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~ 352 (513)
.+++.|.+++|||..+.+....|+ ..+.|++-+++|- ..|+ ++..+-.|++.|+..+... .+.+|...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 788899999999999998888776 7788999999883 3444 6667889999999998876 78899999999999
Q ss_pred ecCCe--EEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296 353 ISNDE--FLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT 429 (513)
Q Consensus 353 ~~~~~--~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 429 (513)
+|... |++|+.||.|++||++.. .+...+..+.... .+..-....|.+.|..++
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~-----------------------~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR-----------------------PPILKTNTAHYGKVNGLA 253 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc-----------------------Cccccccccccceeeeee
Confidence 99885 679999999999999876 5666665443211 111112367888899999
Q ss_pred EecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 430 VCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 430 ~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
|+.++.++++.+.|..+++|+..++...+..+..
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~ 287 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGP 287 (397)
T ss_pred ecccchhhhhccCccceEEeecccCccccccccc
Confidence 9999999999999999999999988655554433
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=177.84 Aligned_cols=239 Identities=15% Similarity=0.235 Sum_probs=190.0
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--cceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCc
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRI--QEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 295 (513)
..+.|++|.|+|....|++++.|++++||.+.. ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 356799999999999999999999999998753 345666666778999999999999 89999999999999998876
Q ss_pred eeE--Eeeccc-CCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296 296 YIS--TLFGHQ-SEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELW 370 (513)
Q Consensus 296 ~~~--~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw 370 (513)
... .+.++. ..+..+..++++.++ ..|..|.|.+....++..+......+.+..++|+.+++ +++++.+|.|.+|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 532 233333 345677778877554 88999999999999998887777788899999999986 7788899999999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
|++...+++.+...... .-+++|.|+++.|||+|+..|.|.|||
T Consensus 372 nl~~~~~~~rf~D~G~v------------------------------------~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSV------------------------------------HGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred ecCCcceEEEEeecCcc------------------------------------ceeeeeecCCCceEEeccCcceEEEec
Confidence 99999999888643321 167889999999999999999999999
Q ss_pred eCCC-----CcceeeeeecCcccEEEEEEeecCCCEEEEEec-CCCccccc
Q 010296 451 IESE-----TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG-QEPRLGRW 495 (513)
Q Consensus 451 ~~~~-----~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-~dg~v~~W 495 (513)
.++. .+++..+.. ....|++++|+||++.||.++. ....+++=
T Consensus 416 ~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLV 464 (514)
T ss_pred cchhhccCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEE
Confidence 7653 123333322 4678999999999999987732 23445543
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=2.1e-22 Score=175.15 Aligned_cols=290 Identities=17% Similarity=0.225 Sum_probs=202.5
Q ss_pred CCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 159 RQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 159 ~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
..+|..+.|.++.. .|+||+.|..|+||-+..+..-..- ........+..|...|+++.|+|+|.+||+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 57899999999877 9999999999999998765432200 001123356889999999999999999999
Q ss_pred EeCCCcEEEEeCC--------C--------cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296 238 GGLDRHIHLWDTR--------I--------QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 238 ~~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
|+.+|.|.+|... + ......+.+|...|..++|+|++.++++++.|..+++||+..|+....+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence 9999999999765 2 22345677899999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeeeEEec--------------------C----CCCeeEEEeecCC
Q 010296 302 GHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRLVFRA--------------------P----ASSLECCCFISND 356 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~--------------------~----~~~v~~~~~~~~~ 356 (513)
.|...+..++|.|-+++ ++-+.|...+.+.+...+...... | ..-...++|+|+|
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 99999999999997654 477777777777665443321110 1 1223456778888
Q ss_pred eEE-EEe----CCCCE-----EEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296 357 EFL-SGS----DDGSI-----ELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV 425 (513)
Q Consensus 357 ~~~-~~~----~dg~i-----~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 425 (513)
.++ +.+ ..+.+ ++|+-... +|...+... ..+.
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-------------------------------------~k~~ 285 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-------------------------------------KKPA 285 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeeccccccCceeecCCC-------------------------------------Ccce
Confidence 643 221 12222 23332211 111111110 0111
Q ss_pred EEEEE------------------ecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEec
Q 010296 426 SSVTV------------------CGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG 487 (513)
Q Consensus 426 ~~~~~------------------s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 487 (513)
..+.| -|.+-.+|.++.+ .|+|||..+. .++..+..+ |-..|+.++|++||.+|+.+ +
T Consensus 286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~-~P~~~v~ni-hy~~iTDiaws~dg~~l~vS-S 361 (434)
T KOG1009|consen 286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTL-EPLAVVDNI-HYSAITDIAWSDDGSVLLVS-S 361 (434)
T ss_pred EEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccc-cceEEEeee-eeeeecceeecCCCcEEEEe-c
Confidence 12222 2344456666665 7999999886 445444443 78899999999999999999 8
Q ss_pred CCCcccccccCC
Q 010296 488 QEPRLGRWGHLP 499 (513)
Q Consensus 488 ~dg~v~~W~~~~ 499 (513)
.||-..+-...+
T Consensus 362 ~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 362 TDGFCSLVTFEP 373 (434)
T ss_pred cCCceEEEEEcc
Confidence 998665554443
No 150
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.7e-22 Score=172.76 Aligned_cols=299 Identities=16% Similarity=0.235 Sum_probs=217.1
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCC-CCCCCcccEEEEEEcC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQG-RATKQSKHILALAVSS 230 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~ 230 (513)
..-+.+|.+.|++|.|+.++++|++|+.|..++||++......++ ..|.. .-..|...|.|++|..
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-------------~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-------------PKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-------------CCCceeccCccccceEEEEEcc
Confidence 345779999999999999999999999999999999864322111 11111 2245678999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcceeeeccC--cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-e--eEEeecccC
Q 010296 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPG--HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-Y--ISTLFGHQS 305 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~ 305 (513)
.+++|++|..+++|.+.|+.+.+.+..+.. ..+.|..+..+|-.+.|++.+.++.|.+||.+..+ . +..+.....
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 999999999999999999999998887762 23489999999999999999999999999998765 2 222333455
Q ss_pred CeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeE-----EecC---CCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296 306 EVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLV-----FRAP---ASSLECCCFISNDE-FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 306 ~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~-----~~~~---~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~ 374 (513)
...++.|+|-. .+++.+..+.+.+||++...... +.+. ...-..+.|+|+|. |++.-....-.+||+.+
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 67888999954 45588889999999998765432 1222 22336778999885 66666666667788766
Q ss_pred CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
..+. .++..|. ++|.. ....+.+++|..+. .+++|+.+-.|++|.+...
T Consensus 276 ~R~~-V~k~D~N--------------------~~GY~---------N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 276 QRCF-VLKSDHN--------------------PNGYC---------NIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ccce-eEeccCC--------------------CCcce---------eeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 4432 2222221 11111 12237788888765 4999999999999999643
Q ss_pred Cc----------------------ceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 455 TK----------------------DIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 455 ~~----------------------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
.. .+..+. .|.+.++.|.|+|...+|+++ |-...++||.-
T Consensus 325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SS-GVE~~~KlWS~ 386 (609)
T KOG4227|consen 325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSS-GVENSFKLWSD 386 (609)
T ss_pred ccccCccccCcchhhCchhheecceeEEEe--cccccccceeecCCcceEecc-chhhheecccc
Confidence 11 111222 367788999999987777766 99999999964
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.2e-23 Score=179.68 Aligned_cols=258 Identities=17% Similarity=0.241 Sum_probs=190.1
Q ss_pred eEEEEECC-------CCCeEEEEeCCceEEEEeCCCCcccccc--CCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-
Q 010296 162 VTAVALSE-------DDSKGFSASKDGSILHWDVSSGKGVKYL--WPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD- 231 (513)
Q Consensus 162 V~~~~~s~-------~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~- 231 (513)
-.|++|.. .|+|+|.|+.|..|.|||+.-...+.-. ....................+|+..|.+|+|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 3689999999999999998643222100 0000000000001112234579999999999875
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 310 (513)
.+.||+|+.|.+|++||+.++++..++..|...|.++.|+|.. .+|++|+.|++|.+.|++........-...+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4589999999999999999999999999999999999999965 578899999999999999644443333467789999
Q ss_pred EeeCCC--eEEEEeCCCcEEEEecCCCe-e-eEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296 311 DCLRKE--RVLTVGRDRSMQLWKVPEES-R-LVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNA 384 (513)
Q Consensus 311 ~~~~~~--~~~~~~~d~~i~iwd~~~~~-~-~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (513)
+|.+.. .++++..||+|+-+|++... + .....|..+|.++++++.. .+++++.++.|++|++....+.......
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~ 415 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS 415 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence 998854 67788899999999999863 3 3778899999999998764 5889999999999998765543332211
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCC
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~ 454 (513)
. .-+...|.++.|+- -+|+.|+..+.++|||+.+.
T Consensus 416 ~-----------------------------------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 416 F-----------------------------------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred c-----------------------------------cccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 1 11126677777765 36778888889999999876
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=1.8e-22 Score=173.89 Aligned_cols=242 Identities=18% Similarity=0.306 Sum_probs=186.5
Q ss_pred CCCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----------------cceeeeccCcCCCeEEEEEecCC-Ce
Q 010296 216 ATKQSKHILALAVSSDG--RYLASGGLDRHIHLWDTRI----------------QEHIQAFPGHRGPVSCLTFRQGT-SE 276 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~ 276 (513)
..+|.+.+..+..++-+ .+.++-+..|.|.||++.. .+++.++.+|...=++|+|||-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 45677778877777754 4566667789999999742 34677888999999999999933 34
Q ss_pred EEEEeCCCcEEEEeCCCCcee---EEeecccCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCC---eeeEEecCCCCee
Q 010296 277 LFSGSFDRTVKIWNAEDRAYI---STLFGHQSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEE---SRLVFRAPASSLE 348 (513)
Q Consensus 277 l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~v~ 348 (513)
|++|..-+.|++|...++... .-+.+|...|-.++|+| ++.|++|+.|++|+|||++.+ ..+....|.+.|.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 888888899999999887653 33567999999999999 467889999999999999987 4567789999999
Q ss_pred EEEeecCCe-EEEEeCCCCEEEEecCCC---CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296 349 CCCFISNDE-FLSGSDDGSIELWSLLRK---KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424 (513)
Q Consensus 349 ~~~~~~~~~-~~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
.+.|+..-. |++|+.||+++|||+++- +++..++ .|..+
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-------------------------------------~Hk~p 349 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-------------------------------------YHKAP 349 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-------------------------------------eccCC
Confidence 999998764 789999999999999864 4555553 44556
Q ss_pred EEEEEEecCC-CEEEEecCCCcEEEEEeCCCC---------------cceeeeeecCcccEEEEEEeecCCCEEEEEecC
Q 010296 425 VSSVTVCGGS-DLAASGAGNGSVRLWAIESET---------------KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ 488 (513)
Q Consensus 425 i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~---------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~ 488 (513)
|++|.|+|.. ..|++++.|.+|.|||+.-.. .+.+.++.......|..|.|++.-+-++++++-
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 9999999954 678888999999999996431 122334443335568889999987766655577
Q ss_pred CCccccc
Q 010296 489 EPRLGRW 495 (513)
Q Consensus 489 dg~v~~W 495 (513)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 76 4445
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=1.3e-22 Score=185.99 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=106.9
Q ss_pred cchhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 150 DEFRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
..+..+.+|...|+.+.|+| ...+||||+.|..|+||.+..+-... + ..+...+.+..-.|-++.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-L------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-L------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-c------------CCcceeecCCceEEEEeec
Confidence 35667889999999999999 45678899999999999998443221 1 1122233445667899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED 293 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 293 (513)
+|...-|+..+..|+++|||+.+++.+..+.+|...|.++.|+.||..|++++.|..|+|||.+.
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 99655555555579999999999999999999999999999999999999999999999999874
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=182.83 Aligned_cols=272 Identities=14% Similarity=0.285 Sum_probs=209.6
Q ss_pred CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296 161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL 240 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 240 (513)
.|+.++|-|||..|+.+.. ..+.|||...|..+.++ .+|...|+|++|+.+|+.+|+|+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-------------------KgHKDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-------------------KGHKDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-------------------ccccceEEEEEEccCCceeccCCC
Confidence 8999999999999887764 57899999999988754 899999999999999999999999
Q ss_pred CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-
Q 010296 241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL- 319 (513)
Q Consensus 241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 319 (513)
|..|.+|+..- +-+..+. |...|.||.|+|-...|++++.. ..-+|........ .. .....+.+.+|..+|+++
T Consensus 74 DK~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqyla 148 (1081)
T KOG1538|consen 74 DKSVIIWTSKL-EGILKYS-HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLA 148 (1081)
T ss_pred ceeEEEecccc-cceeeec-cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeecCCCcEEE
Confidence 99999998542 2233343 99999999999999999998764 4678887654322 21 245578899999999766
Q ss_pred EEeCCCcEEEEecCCCeeeEEe---cCCCCeeEEEeecCC------eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296 320 TVGRDRSMQLWKVPEESRLVFR---APASSLECCCFISND------EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG 390 (513)
Q Consensus 320 ~~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~------~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 390 (513)
.|-.+|+|.+-+-......... +...+|.+++|+|.. .+++.....++.+|.+... .+..-...
T Consensus 149 lG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L------ 221 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRAL------ 221 (1081)
T ss_pred EeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccC------
Confidence 5668999999876655554443 367899999999863 2668888888888886543 22211100
Q ss_pred CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEE
Q 010296 391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFV 470 (513)
Q Consensus 391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v 470 (513)
.-...|+.+.++|.+++.|+.|+.+.+|--.. ..+-++.. ....|
T Consensus 222 -------------------------------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G--vrLGTvg~--~D~WI 266 (1081)
T KOG1538|consen 222 -------------------------------NFDPCCISYFTNGEYILLGGSDKQLSLFTRDG--VRLGTVGE--QDSWI 266 (1081)
T ss_pred -------------------------------CCCchhheeccCCcEEEEccCCCceEEEeecC--eEEeeccc--cceeE
Confidence 00167899999999999999999999997543 23333333 46789
Q ss_pred EEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 471 NSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
+.|+..|++++++.| ..||+|..|++...
T Consensus 267 WtV~~~PNsQ~v~~G-CqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVG-CQDGTIACYNLIFS 295 (1081)
T ss_pred EEEEEccCCceEEEE-EccCeeehhhhHHh
Confidence 999999999999999 89999999986543
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-22 Score=178.18 Aligned_cols=263 Identities=16% Similarity=0.212 Sum_probs=196.1
Q ss_pred EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCcc--
Q 010296 177 ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY-LASGGLDRHIHLWDTRIQE-- 253 (513)
Q Consensus 177 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vwd~~~~~-- 253 (513)
++....++|||+........+. .......+.++.|+....+ +++.+.|..|++|.-. ++
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~ 69 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTP 69 (673)
T ss_pred eccCCceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCC
Confidence 3334579999998776655431 1112233899999876542 2334567889999733 32
Q ss_pred -e--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeCCCcEEE
Q 010296 254 -H--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGRDRSMQL 329 (513)
Q Consensus 254 -~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i 329 (513)
+ +....+ ..-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++- |.++++++..|.|.|
T Consensus 70 ~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 70 EVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII 147 (673)
T ss_pred ccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence 1 222222 2344555555568999999999999999998778888999999999999987 457778889999999
Q ss_pred EecCCCeeeEEecC--CCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296 330 WKVPEESRLVFRAP--ASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH 405 (513)
Q Consensus 330 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 405 (513)
..+.++.......+ ...+.-+.+++..+ |.+++.+|.|.+||+....++..+.
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----------------------- 204 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----------------------- 204 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-----------------------
Confidence 99998877644433 34566788998876 5588999999999999988887776
Q ss_pred CCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEE
Q 010296 406 SENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIA 484 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 484 (513)
..|..+...|+|+|.. .+|++.+.|..|.+||+.+. .....+ ....+.++|+|+++|.+|++
T Consensus 205 -------------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l---~y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 205 -------------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRL---TYSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred -------------hhccCCcCcceecCCccceEEEecccceEEEeecccc-ccccee---eecCCcceeeecCCceEEEe
Confidence 4455558899999954 67889999999999999876 222222 24567899999999999999
Q ss_pred EecCCCcccccccCCC
Q 010296 485 GVGQEPRLGRWGHLPA 500 (513)
Q Consensus 485 ~~~~dg~v~~W~~~~~ 500 (513)
| ...|.|..||+..-
T Consensus 268 G-~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 268 G-NSKGELIAYDMRST 282 (673)
T ss_pred e-cCCceEEEEecccC
Confidence 9 88999999998654
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=4.4e-21 Score=162.17 Aligned_cols=284 Identities=17% Similarity=0.268 Sum_probs=202.3
Q ss_pred eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc-------CCCCE
Q 010296 162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-------SDGRY 234 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~~~~~ 234 (513)
...+.|+|||..|++-+.|..+.+|++.....-... +.... ..............|+..+|- |+..+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~-----~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLN-----FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCccc-----cccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 456799999999999999999999998632211100 00000 000000112234568888886 57789
Q ss_pred EEEEeCCCcEEEEeCCCcceeeeccC--cCC---CeEEEEEecCCCeEEEEeCCCcEEEEeC-CCCce--eEE-e----e
Q 010296 235 LASGGLDRHIHLWDTRIQEHIQAFPG--HRG---PVSCLTFRQGTSELFSGSFDRTVKIWNA-EDRAY--IST-L----F 301 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~--~~~-~----~ 301 (513)
+++.+.+.-|++||.-+|+....+.+ |.. ...+++|+|||.+|++|. ...|+++|+ +.|+. +.. + .
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence 99999999999999999998877765 332 457899999999998875 678999999 44432 111 1 2
Q ss_pred cccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEecCCC-
Q 010296 302 GHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGS-DDGSIELWSLLRK- 375 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~~~~- 375 (513)
+..+-+.+++|+|.. .+++++....+-||.-....++ .+.+|...|+.++|.++|. |++|+ .+..|..||++..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 346678899999943 5668888888888887766665 5668999999999999985 77765 4788999999864
Q ss_pred CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296 376 KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET 455 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~ 455 (513)
.++..+..+.... ..-.-....|++++|++|+.||.|++||++...
T Consensus 285 ~pv~~L~rhv~~T----------------------------------NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 285 DPVYALERHVGDT----------------------------------NQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred chhhhhhhhccCc----------------------------------cceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 4555554322100 002234556899999999999999999999853
Q ss_pred cceeeeeecCcccEEEEEEeecCCCEEEEEecC
Q 010296 456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ 488 (513)
Q Consensus 456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~ 488 (513)
..+..+. .+...|+.|+++|--+++++++|.
T Consensus 331 n~~sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 331 NEVSVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred Ccccccc--cccccccceecCcccceeeeccCc
Confidence 4333333 367889999999999999888554
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2e-21 Score=178.41 Aligned_cols=250 Identities=18% Similarity=0.237 Sum_probs=180.6
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
+.....|...|..+.|-|....|++++.|.++++||+....+...- ...+|...|.+++|.|.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-----------------~~~GH~~SvkS~cf~~~ 155 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-----------------LNLGHTGSVKSECFMPT 155 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-----------------eecccccccchhhhccC
Confidence 4566789999999999997778899999999999999988866531 24799999999999995
Q ss_pred -CCEEEEEeCCCcEEEEeCCCcc---------------------------eeeeccCcCCCeEE---EEEecCCCeEEEE
Q 010296 232 -GRYLASGGLDRHIHLWDTRIQE---------------------------HIQAFPGHRGPVSC---LTFRQGTSELFSG 280 (513)
Q Consensus 232 -~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~~l~~~ 280 (513)
...|++|+.||.|.|||++-.. .+.....+...|.+ +.+..|...|+++
T Consensus 156 n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSa 235 (720)
T KOG0321|consen 156 NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASA 235 (720)
T ss_pred CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeec
Confidence 5678999999999999975322 01112234455555 5666788889988
Q ss_pred eC-CCcEEEEeCCCCceeEEe--------ecc---cCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee---EEecCC
Q 010296 281 SF-DRTVKIWNAEDRAYISTL--------FGH---QSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL---VFRAPA 344 (513)
Q Consensus 281 ~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~---~~~~~~ 344 (513)
+. |+.|+|||++........ ..| .-.+.++.....| ++++.+.|+.|++|++.+.... .+.++.
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 87 999999999876543222 122 2234555554444 6777788999999999876543 222221
Q ss_pred C--CeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCC
Q 010296 345 S--SLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSA 421 (513)
Q Consensus 345 ~--~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 421 (513)
. ....-..+|++. +++|+.|...++|.+.+...-..+. .+|
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------------------------------------~Gh 359 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------------------------------------LGH 359 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------------------------------------hCc
Confidence 1 112234577876 7799999999999998765443333 344
Q ss_pred cceEEEEEEecCC-CEEEEecCCCcEEEEEeCCC
Q 010296 422 YSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 422 ~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~ 454 (513)
...|++++|.|.. .-++|++.|..++||++..+
T Consensus 360 t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 360 TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 4559999998843 34667799999999999765
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-21 Score=178.71 Aligned_cols=241 Identities=16% Similarity=0.253 Sum_probs=189.8
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAED 293 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~ 293 (513)
.+.+|.+.|.+|...|.|.+|++|+.||+|+||.+.++.++.++. ..+.|.|++|+|.+.. ++++.....+.|.+..-
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 578999999999999999999999999999999999999999887 5678999999997754 33333333344443211
Q ss_pred C-------------------------------------ceeEEeecccCCeEEEEeeCCCeEE-EEeC---CCcEEEEec
Q 010296 294 R-------------------------------------AYISTLFGHQSEVLTIDCLRKERVL-TVGR---DRSMQLWKV 332 (513)
Q Consensus 294 ~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---d~~i~iwd~ 332 (513)
| .-+.....|...|..+.|+..|.++ +... ...|.|+.+
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1 0122233478889999999988554 4432 467889998
Q ss_pred CCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCC
Q 010296 333 PEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNL 411 (513)
Q Consensus 333 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 411 (513)
.....+ .+....+.+.++.|+|...++..+....|+|||+.....+..+.
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~----------------------------- 604 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL----------------------------- 604 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh-----------------------------
Confidence 766554 45567788999999998865555567789999998876665553
Q ss_pred CCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCc
Q 010296 412 NPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPR 491 (513)
Q Consensus 412 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~ 491 (513)
....+|.+++++|.|.-|+.|+.|+.+..||+.-..++.+.+.. |...|++|+|++.-.++++| ++||+
T Consensus 605 --------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~-sdDgt 673 (733)
T KOG0650|consen 605 --------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASG-SDDGT 673 (733)
T ss_pred --------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeee-cCCCc
Confidence 23355999999999999999999999999999988778887776 88899999999999998888 99999
Q ss_pred ccccc
Q 010296 492 LGRWG 496 (513)
Q Consensus 492 v~~W~ 496 (513)
+.++.
T Consensus 674 v~Vfh 678 (733)
T KOG0650|consen 674 VIVFH 678 (733)
T ss_pred EEEEe
Confidence 99884
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=8.1e-22 Score=161.93 Aligned_cols=285 Identities=18% Similarity=0.219 Sum_probs=196.6
Q ss_pred ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
..++..|++|.+.|+++.|-.+++ |++|..-|.|++|++++......+ ...|...|+.+.-
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~------------------r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLI------------------RLFGRLFITNLQS 64 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhh------------------hhhccceeeceee
Confidence 345667889999999999998876 899999999999999988766543 1256778999998
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecC-----CC----eEEEEeCCC-cEEEEeCCCCceeE
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG-----TS----ELFSGSFDR-TVKIWNAEDRAYIS 298 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~----~l~~~~~dg-~i~iwd~~~~~~~~ 298 (513)
-|+ ..|.+-+.|+.+.+|++.-+..+.. |.-.++++.|.+- ++ .++.-+... .+++-|......+.
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence 887 5688889999999999986554322 4445555655442 11 111111100 02222222211122
Q ss_pred Ee----ecccCCeEEEEeeC-CC-e--EEEEeCCCcEEEEecCCCeee-----------EEecCCCCeeEEEeecCC-eE
Q 010296 299 TL----FGHQSEVLTIDCLR-KE-R--VLTVGRDRSMQLWKVPEESRL-----------VFRAPASSLECCCFISND-EF 358 (513)
Q Consensus 299 ~~----~~~~~~v~~~~~~~-~~-~--~~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~v~~~~~~~~~-~~ 358 (513)
.. .+..+.+.+..+.- .+ + +++|-.+|.+.+||+.++..+ ....|..++.++.+.+.- +=
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC
Confidence 11 12345566666432 22 3 336668999999999986332 234567788888877542 35
Q ss_pred EEEeCCCCEEEEecCCCC--e--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC
Q 010296 359 LSGSDDGSIELWSLLRKK--P--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS 434 (513)
Q Consensus 359 ~~~~~dg~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 434 (513)
++|+.+..+..|++.... . ...+...++ .|..+.+-||+
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknp-------------------------------------Gv~gvrIRpD~ 263 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNP-------------------------------------GVSGVRIRPDG 263 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCC-------------------------------------CccceEEccCC
Confidence 677788888888876431 1 111211121 18889999999
Q ss_pred CEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 435 DLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 435 ~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
+++||+++|+.||||+.++. .++..+.. |.+.|++++|+|+...+|++ +.|++|.+|++
T Consensus 264 KIlATAGWD~RiRVyswrtl-~pLAVLky--Hsagvn~vAfspd~~lmAaa-skD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTL-NPLAVLKY--HSAGVNAVAFSPDCELMAAA-SKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEeccC-Cchhhhhh--hhcceeEEEeCCCCchhhhc-cCCceEEeeec
Confidence 99999999999999999998 56666665 88999999999999999999 99999999975
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=2.5e-21 Score=167.87 Aligned_cols=215 Identities=17% Similarity=0.312 Sum_probs=174.4
Q ss_pred hhhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296 152 FRVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 230 (513)
+-.+.||+++|..++|+| +...||+||.|.+|.||.+..+.....+ ..|...+.+|...|-.++|+|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQWHP 141 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEeecc
Confidence 345679999999999999 5678899999999999999877655433 345556789999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC-CeE
Q 010296 231 D-GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS-EVL 308 (513)
Q Consensus 231 ~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~ 308 (513)
. .+.|++++.|.+|.+|++.+++.+.++. |...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+ ...
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence 5 5688999999999999999999998888 999999999999999999999999999999999999988777776 345
Q ss_pred EEEeeCCCeEEEEe----CCCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeE
Q 010296 309 TIDCLRKERVLTVG----RDRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVY 379 (513)
Q Consensus 309 ~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~ 379 (513)
.+.|..++.+++.+ ++..+-+||...-.. .......+.|.--.+.++.. +++|-.|+.|+.|.+....+..
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~ 300 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFV 300 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCcee
Confidence 56677788888666 478899998765332 23333445555555566654 5688899999999998876543
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=2.6e-21 Score=170.88 Aligned_cols=252 Identities=17% Similarity=0.231 Sum_probs=187.4
Q ss_pred CCCCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEE
Q 010296 215 RATKQSKHILALAVSSDG--RYLASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVK 287 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 287 (513)
...-+...|++++|+|.. +++|+|..-|+|-+||+.+.+ -+..+..|.++|.+|.|+|.. ..+++.+.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 345678899999999954 588899999999999995332 356677899999999999954 5799999999999
Q ss_pred EEeCCCCce--eEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe--EEE
Q 010296 288 IWNAEDRAY--ISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE--FLS 360 (513)
Q Consensus 288 iwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~~ 360 (513)
+-|+.+... +..+......+..+.|+.. ..++++..=|.+.+||+++.... ....|...|..++++|..- |++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 999987644 3333324445667777764 46667877789999999987653 5566777999999999873 889
Q ss_pred EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296 361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG 440 (513)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g 440 (513)
++.|++++|||++....... + .+....|...|.+..|||.+-.|+|.
T Consensus 341 ~s~D~T~kIWD~R~l~~K~s-----p----------------------------~lst~~HrrsV~sAyFSPs~gtl~TT 387 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKAS-----P----------------------------FLSTLPHRRSVNSAYFSPSGGTLLTT 387 (498)
T ss_pred cccCcceeeeehhhhcCCCC-----c----------------------------ceecccccceeeeeEEcCCCCceEee
Confidence 99999999999987533221 0 01115566669999999998889999
Q ss_pred cCCCcEEEEEeCCCCcceeeeeecCccc------EEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 441 AGNGSVRLWAIESETKDIQPLYNLPLVG------FVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 441 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~------~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
+.|..|+|||..--.....++..++|.. ......|.|+..+++++ ..-..|-+++-..+
T Consensus 388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg-~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVG-RYPRPIDVFDGNGG 452 (498)
T ss_pred ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEe-ccCcceeEEcCCCC
Confidence 9999999999852212223333333422 24457899999999998 66667888865443
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=2.2e-20 Score=155.49 Aligned_cols=250 Identities=18% Similarity=0.306 Sum_probs=190.0
Q ss_pred CCCCcccEEEEEEcC-CCCEEEEEeCC-------CcEEEEeCCCc---------ceeeecc-CcCCCeEEEEEecCCCeE
Q 010296 216 ATKQSKHILALAVSS-DGRYLASGGLD-------RHIHLWDTRIQ---------EHIQAFP-GHRGPVSCLTFRQGTSEL 277 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~-~~~~l~s~~~d-------g~i~vwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~l 277 (513)
+..|.+.|+.|+-+| +.+.|+++..+ -.+.||.+... +++..+. .+-+.|.|+.|.|++..|
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 467888999999999 45566666542 24779987532 3344444 356689999999999988
Q ss_pred EEEeCCCcEEEEeCCCCce-eEEee-----cccCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCCeee--EEecCCCCe
Q 010296 278 FSGSFDRTVKIWNAEDRAY-ISTLF-----GHQSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEESRL--VFRAPASSL 347 (513)
Q Consensus 278 ~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v 347 (513)
++-. |..|.+|++..+.. +..+. .+....++-+|+| ++..+.+..++++..||+++.... ....|...+
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~v 217 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRV 217 (370)
T ss_pred EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhccee
Confidence 8776 88999999987655 33332 2455677888998 678888889999999999987665 456788889
Q ss_pred eEEEeecCCe--EEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296 348 ECCCFISNDE--FLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424 (513)
Q Consensus 348 ~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
..+.|.|+.. |++++.||.|+|||.+..+ ++..+ ..|..|
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-------------------------------------~~HsHW 260 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-------------------------------------PGHSHW 260 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-------------------------------------CCCceE
Confidence 9999999985 7899999999999998754 44444 677889
Q ss_pred EEEEEEecC-CCEEEEecCCCcEEEEEeCCCC--------------------cceeeee-----e-cCcccEEEEEEeec
Q 010296 425 VSSVTVCGG-SDLAASGAGNGSVRLWAIESET--------------------KDIQPLY-----N-LPLVGFVNSLAFAK 477 (513)
Q Consensus 425 i~~~~~s~~-~~~l~~g~~dg~v~vwd~~~~~--------------------~~~~~~~-----~-~~~~~~v~~v~~sp 477 (513)
|.++.|+|. .++|++|+.|..|.+|...+-. ...+++. . -.|...|.+++||.
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 999999994 4688999999999999875321 0111111 1 12678899999999
Q ss_pred CCCEEEEEecCCCcccccccCCCccc
Q 010296 478 SGQFLIAGVGQEPRLGRWGHLPAARN 503 (513)
Q Consensus 478 ~~~~l~~~~~~dg~v~~W~~~~~~~~ 503 (513)
-.++++++.+.||+|.|=.+.+..|-
T Consensus 341 adPWiFASLSYDGRviIs~V~r~~ky 366 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVIISSVPRFLKY 366 (370)
T ss_pred CCCeeEEEeccCceEEeecCChhhhh
Confidence 99999999999999988766655443
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.4e-21 Score=177.14 Aligned_cols=292 Identities=21% Similarity=0.276 Sum_probs=204.2
Q ss_pred CeEEEEeCCceEEEE--eCCCCccccccCCChhhhcc--CCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010296 172 SKGFSASKDGSILHW--DVSSGKGVKYLWPSEEVLKS--HGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLW 247 (513)
Q Consensus 172 ~~l~t~~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 247 (513)
+..++...+....+| ++........+. .....+. ...+.+......|...|+.++|+|....|++++.+|.|.+|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~d-d~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFD-DLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW 321 (577)
T ss_pred CccccCchHHHHhhcccchhccccccccc-chhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence 345566666777777 444333222221 0000000 01122333667889999999999999999999999999999
Q ss_pred eCCC--------cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC----------ceeEEeecccCCeEE
Q 010296 248 DTRI--------QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR----------AYISTLFGHQSEVLT 309 (513)
Q Consensus 248 d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~ 309 (513)
+++. -+++.+|++|.++|.|+++.+++.++++|+.||+|+.|++... .....+.||...|+.
T Consensus 322 nLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~ 401 (577)
T KOG0642|consen 322 NLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWL 401 (577)
T ss_pred hhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceee
Confidence 9932 2468899999999999999999999999999999999976421 234567899999999
Q ss_pred EEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEecCC--CCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296 310 IDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRAPA--SSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNA 384 (513)
Q Consensus 310 ~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (513)
+++++. .+|++++.||++++|+.......++.... .....+.+.... ..++...-+.-.++++.....+..+...
T Consensus 402 l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~ 481 (577)
T KOG0642|consen 402 LALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS 481 (577)
T ss_pred eeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc
Confidence 999985 57889999999999999877664443332 223334433322 1223333344444555444444444321
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~ 464 (513)
.... ......+..+.++|.+.+.+++..|+.|+++|..++ .++....
T Consensus 482 ~~~~------------------------------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~-- 528 (577)
T KOG0642|consen 482 ASPG------------------------------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSMV-- 528 (577)
T ss_pred CCCc------------------------------ccccCccceEEecCCCCeeEecccCCceeccccccc-ccchhee--
Confidence 1100 112233888899999999999999999999999988 3333333
Q ss_pred CcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 465 PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 465 ~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
.|...++++++.|+|.+|+++ +.|+++++|...
T Consensus 529 a~~~svtslai~~ng~~l~s~-s~d~sv~l~kld 561 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSG-SHDGSVRLWKLD 561 (577)
T ss_pred eccceecceeecCCCceEEee-cCCceeehhhcc
Confidence 378899999999999999999 999999999763
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-21 Score=192.11 Aligned_cols=242 Identities=20% Similarity=0.268 Sum_probs=187.9
Q ss_pred CcccEEEEEEcCCCCE----EEEEeCCCcEEEEeCCCc------ceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEE
Q 010296 219 QSKHILALAVSSDGRY----LASGGLDRHIHLWDTRIQ------EHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVK 287 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~----l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 287 (513)
.....+.++|.+.|.. ||.|..||.|.+||...- ..+.++..|.+.|..+.|++... .|++|+.+|.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3456889999997665 888999999999997642 34667778999999999999765 899999999999
Q ss_pred EEeCCCCceeEEe--ecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEecCC---CCeeEEEeecCC--eE
Q 010296 288 IWNAEDRAYISTL--FGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAPA---SSLECCCFISND--EF 358 (513)
Q Consensus 288 iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~--~~ 358 (513)
|||+...+..... ......|.+++|+..- .|++++.+|.+.|||++..+.+...... ..+..++|+|++ ++
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999875544433 2245689999998853 4558888999999999988766333222 347789999998 36
Q ss_pred EEEeCC---CCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC
Q 010296 359 LSGSDD---GSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS 434 (513)
Q Consensus 359 ~~~~~d---g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 434 (513)
++++.| -.|.+||++.. .+++++ ..|...|.++.|++..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~-------------------------------------~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKIL-------------------------------------EGHQRGILSLSWCPQD 265 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhh-------------------------------------cccccceeeeccCCCC
Confidence 666654 36999998764 344444 2344459999999976
Q ss_pred -CEEEEecCCCcEEEEEeCCCCcceeeeeecC-cccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 435 -DLAASGAGNGSVRLWAIESETKDIQPLYNLP-LVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 435 -~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
.+|++++.|+.|.+|+.+++ ..+..++ ....+..+.|+|...-++++.+-||.|.|+.+....
T Consensus 266 ~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 89999999999999999998 3444444 356799999999999777776999999999877654
No 165
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.3e-20 Score=154.92 Aligned_cols=243 Identities=18% Similarity=0.249 Sum_probs=186.4
Q ss_pred CCeEEEEECCCCCeEEE-EeCCceEEEEeCCCCcc---ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 160 QSVTAVALSEDDSKGFS-ASKDGSILHWDVSSGKG---VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 160 ~~V~~~~~s~~~~~l~t-~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
+.-+.+.|+||.+-++. +-...++++|.+...+- ...+. ..........|.-.|..+-...++.+|
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v----------~~D~~~f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV----------HIDNLEFERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc----------cccccccchhcccceEEEeecCCceEE
Confidence 35688999999876664 44566899998754321 11110 011111235677778888888899999
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC---CC-----ceeEEeecccCCe
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE---DR-----AYISTLFGHQSEV 307 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v 307 (513)
++++.|..|.+|++. |+.+..+......-+..+.+|+|++|++++..--|++|.+- .| ..+..+.+|...|
T Consensus 203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV 281 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV 281 (420)
T ss_pred EEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence 999999999999998 89998888777777888999999999999999999999863 22 2356789999999
Q ss_pred EEEEeeCCC-eEEEEeCCCcEEEEecCCCee-------e-----EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296 308 LTIDCLRKE-RVLTVGRDRSMQLWKVPEESR-------L-----VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR 374 (513)
Q Consensus 308 ~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~-------~-----~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~ 374 (513)
..++|+++. ++++++.||++++||..-.-. + ......+....+.++|.|.+++.+....+++|..++
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence 999999976 788999999999999853211 1 111223344589999999988888888999999999
Q ss_pred CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
++....++. .|...|++++|+++|+++++++ |..++++.
T Consensus 362 g~~~~~~e~------------------------------------~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 362 GKDYPELED------------------------------------IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CccchhHHH------------------------------------hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 887777663 3444599999999999999987 56788876
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=5.5e-21 Score=161.96 Aligned_cols=243 Identities=20% Similarity=0.299 Sum_probs=183.9
Q ss_pred ccCCCeEEEEECCC----CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-
Q 010296 157 KHRQSVTAVALSED----DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD- 231 (513)
Q Consensus 157 ~h~~~V~~~~~s~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~- 231 (513)
.|...-+.++|+-+ ..+||.||.-|.|+|.|+.+++....+ .+|...|..|.|+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-------------------~ghG~sINeik~~p~~ 147 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-------------------RGHGGSINEIKFHPDR 147 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-------------------eccCccchhhhcCCCC
Confidence 36777888888764 458999999999999999998877644 799999999999996
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeecc---CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE----------
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFP---GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS---------- 298 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------- 298 (513)
.+++++++.|..|++|++++..++..|- +|...|.++.|++++.+|++++.|.+|++|++...+...
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 4789999999999999999999988875 599999999999999999999999999999997432111
Q ss_pred ------------------EeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecC-CCee----------e----EEecCCC
Q 010296 299 ------------------TLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVP-EESR----------L----VFRAPAS 345 (513)
Q Consensus 299 ------------------~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~----------~----~~~~~~~ 345 (513)
+-..|...|-|+.|.- +.+++-+.++.|..|... -... . .+..+..
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c 306 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC 306 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc
Confidence 0112455555555543 456688888999999872 1111 0 2233344
Q ss_pred CeeEEEee--cCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296 346 SLECCCFI--SNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY 422 (513)
Q Consensus 346 ~v~~~~~~--~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 422 (513)
.+.-+.|. +-+. |+.|...|.|.+||+....+...-...+ ....
T Consensus 307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~---------------------------------s~~~ 353 (385)
T KOG1034|consen 307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH---------------------------------SKSG 353 (385)
T ss_pred ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe---------------------------------cccc
Confidence 45555544 4343 7899999999999999877642211111 2223
Q ss_pred ceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
..|...+||.+|.+|+..+.|++|.-||..
T Consensus 354 ~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 354 STVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 449999999999999999999999999864
No 167
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=6.9e-22 Score=186.58 Aligned_cols=283 Identities=20% Similarity=0.258 Sum_probs=213.3
Q ss_pred ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
.+.++.|.+|..+|+|+.|...|.+++||+.|..|+||...++.++.. ..+|.+.|+.++.
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlav 240 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhcc
Confidence 455677889999999999999999999999999999999999888764 4899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe---e-ccc
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL---F-GHQ 304 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~-~~~ 304 (513)
+.+..++++++.|..|++|.+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-...+..- . ...
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccc
Confidence 999999999999999999999999999999999999999999994 37888999999998721111110 0 122
Q ss_pred CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecC--CeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296 305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISN--DEFLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
..+.++.|...+ .+++++.++.-..|.+..... +...+.-+..+.+ ...+++-.+-.+.+|++.++...+.+
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l 391 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL 391 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhh-----hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh
Confidence 345556665544 678999998888876542111 1111111111111 22456666778889999888766655
Q ss_pred ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceee
Q 010296 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQP 460 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~ 460 (513)
.+|...+..+.++|-. +...+++.||...|||+-.+ .+++.
T Consensus 392 -------------------------------------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-~pik~ 433 (1113)
T KOG0644|consen 392 -------------------------------------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-IPIKH 433 (1113)
T ss_pred -------------------------------------cccccceeeeeecCCCcHhhhhccCCCceEeeecccC-Cccee
Confidence 4455558899999955 55668899999999999888 44444
Q ss_pred eeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
.. .+ .+.+...+||++|..++.. .+-|.+.|...-.+
T Consensus 434 y~-~g-h~kl~d~kFSqdgts~~ls-d~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 434 YF-IG-HGKLVDGKFSQDGTSIALS-DDHGQLYILGTGQS 470 (1113)
T ss_pred ee-cc-cceeeccccCCCCceEecC-CCCCceEEeccCCC
Confidence 43 33 4567778999999999887 77788888865443
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1.4e-18 Score=169.96 Aligned_cols=290 Identities=30% Similarity=0.490 Sum_probs=226.1
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc-cccccCCChhhhccCCCCCCCCCCCCCc-ccEEEEEE-cC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK-GVKYLWPSEEVLKSHGAKDPQGRATKQS-KHILALAV-SS 230 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-s~ 230 (513)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+ ..+. ..+..+.+ ++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 120 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-------------------EGLHDSSVSKLALSSP 120 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-------------------eccCCCceeeEEEECC
Confidence 566899999999999999999999999999999998876 33332 1211 35677777 78
Q ss_pred CCC-EEEEEeC-CCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCceeEEeecccCC
Q 010296 231 DGR-YLASGGL-DRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAYISTLFGHQSE 306 (513)
Q Consensus 231 ~~~-~l~s~~~-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 306 (513)
++. +++..+. ++.+.+|++.. ......+..|...|..++|+|++.++++++. ++.+++|++..+..+..+.+|...
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc
Confidence 777 5555444 89999999988 7888888899999999999999998888885 999999999998888888889999
Q ss_pred eEEEEeeCCCe-EEEE-eCCCcEEEEecCCCeeeE--EecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCe-eEE
Q 010296 307 VLTIDCLRKER-VLTV-GRDRSMQLWKVPEESRLV--FRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKP-VYI 380 (513)
Q Consensus 307 v~~~~~~~~~~-~~~~-~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~-~~~ 380 (513)
+.++.|+|++. ++++ +.++.|++|+...+.... +..|.... ...|++++ .+++++.++.+++|++..... +..
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 99999999885 5544 889999999888665554 55555554 33788988 577899999999999987765 333
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP 460 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~ 460 (513)
+ .. |...+.++.|+|++..+++++.|+.+.+|++.... ....
T Consensus 280 ~-~~------------------------------------~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~ 321 (466)
T COG2319 280 L-SG------------------------------------HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSS 321 (466)
T ss_pred E-ec------------------------------------CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEE
Confidence 3 11 12339999999988888889989999999887762 2222
Q ss_pred eeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
.....|...+..+.|.+++..++.+...|+.+.+|+.....
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 22233666799999943435666665677899999887665
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=174.45 Aligned_cols=249 Identities=18% Similarity=0.267 Sum_probs=198.5
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
+.++.....++++++|.+.|+|++|+.||+.+|+|+.|..|.+|.-.-...++ ..|...
T Consensus 37 iyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk---------------------YSH~D~ 95 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK---------------------YSHNDA 95 (1081)
T ss_pred EEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee---------------------eccCCe
Confidence 46777888899999999999999999999999999999999999976554443 479999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee--EEe
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI--STL 300 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~ 300 (513)
|.|+.|+|-...|++++-. ..-+|....... ...+ ....|.+.+|..||++|+.|-.+|+|.+-+-.....+ ...
T Consensus 96 IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 96 IQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP 172 (1081)
T ss_pred eeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence 9999999999999999854 467898654432 2222 3467889999999999999999999999875433222 222
Q ss_pred ecccCCeEEEEeeCC------CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecC
Q 010296 301 FGHQSEVLTIDCLRK------ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLL 373 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~------~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~ 373 (513)
-+...+|++++|+|. ..+.++....++.+|.+.....-......-...|+.+.++|. ++.|+.|+.+++|. +
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R 251 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-R 251 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-e
Confidence 346779999999984 246688889999999987665555555666778899999996 67999999999997 4
Q ss_pred CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296 374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~ 453 (513)
.|-.+.++ .....||++++..|++++++.|+.||+|-.|++-.
T Consensus 252 ~GvrLGTv-------------------------------------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 252 DGVRLGTV-------------------------------------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCeEEeec-------------------------------------cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 44444443 23456799999999999999999999999999853
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=160.15 Aligned_cols=281 Identities=16% Similarity=0.246 Sum_probs=198.4
Q ss_pred CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 010296 172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--DGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~vwd~ 249 (513)
..+|++...|.|++||..+++.+..+ .++...+..+.|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-------------------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-------------------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-------------------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 56888999999999999998877654 66777788888876 5678899999999999999
Q ss_pred CCcceeee--ccCcC-CCeEEEEEecCCCeEEEEe----CCCcEEEEeCCCCce-eEEe-ecccCCeEEEEeeCC--CeE
Q 010296 250 RIQEHIQA--FPGHR-GPVSCLTFRQGTSELFSGS----FDRTVKIWNAEDRAY-ISTL-FGHQSEVLTIDCLRK--ERV 318 (513)
Q Consensus 250 ~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~--~~~ 318 (513)
++...+.. +..+. .+..+++....++.+++|+ .+..|.+||++..+. +..+ ..|...|+++.|+|. +.|
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence 87765443 33444 4667777776777777775 377899999998766 4443 579999999999995 477
Q ss_pred EEEeCCCcEEEEecCCCee----eEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296 319 LTVGRDRSMQLWKVPEESR----LVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK 392 (513)
Q Consensus 319 ~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 392 (513)
++|+.||.|.+||+..... .....+.+.|.++.|..++ ++.+-+...+..+|++..+.+...+....-......
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 7999999999999976532 2455677889999999998 688999999999999999886655543211000000
Q ss_pred CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCC--CCcceeeeeec--Ccc
Q 010296 393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIES--ETKDIQPLYNL--PLV 467 (513)
Q Consensus 393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~--~~~~~~~~~~~--~~~ 467 (513)
......++.......++.+++.++. -|...++-+.. .....+....+ .|.
T Consensus 262 -------------------------~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ 316 (376)
T KOG1188|consen 262 -------------------------KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE 316 (376)
T ss_pred -------------------------hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH
Confidence 0000111222222223445555444 56666666552 11122222211 256
Q ss_pred cEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 468 GFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 468 ~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
..|+++.|...+.+|.+| |.||.|.+|..
T Consensus 317 eiVR~i~~~~~~~~l~TG-GEDG~l~~Wk~ 345 (376)
T KOG1188|consen 317 EIVRDILFDVKNDVLYTG-GEDGLLQAWKV 345 (376)
T ss_pred HHHHHHhhhcccceeecc-CCCceEEEEec
Confidence 678999999888999999 99999999985
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.3e-19 Score=143.00 Aligned_cols=278 Identities=16% Similarity=0.182 Sum_probs=197.6
Q ss_pred CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296 160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239 (513)
Q Consensus 160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 239 (513)
..|.+-+++|.+++|+.|..+|+|.++.+.+...-... .....+.....+|..+|+.++|+ ..+|++|+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 45777789999999999999999999998754322111 11122233457899999999999 45777777
Q ss_pred CCCcEEEEeCCCcce------ee--eccCcC-----CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296 240 LDRHIHLWDTRIQEH------IQ--AFPGHR-----GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE 306 (513)
Q Consensus 240 ~dg~i~vwd~~~~~~------~~--~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 306 (513)
||.|+-|..+.... +. ..+-|. ..|++|...|..+-+++++.|+.++.||+.+|+..+.+++|+..
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 59999998653221 11 111122 35889999998888888889999999999999999999999999
Q ss_pred eEEEEe-eCCCeEEEEeCCCcEEEEecCCCeeeEEecCC-----------CCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296 307 VLTIDC-LRKERVLTVGRDRSMQLWKVPEESRLVFRAPA-----------SSLECCCFISNDEFLSGSDDGSIELWSLLR 374 (513)
Q Consensus 307 v~~~~~-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~ 374 (513)
|.++.- +..+.+++++.||++++||.++.+........ ..|.+++.+ ...++++....+.+|.++.
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCCCceeEEeccC
Confidence 999987 56789999999999999999998877443322 223444433 2355566677899999999
Q ss_pred CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 375 KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.++..++..... +..+.|..+ .+++++..+.|.-|.+..-
T Consensus 237 se~t~vfpipa~--------------------------------------v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 237 SESTCVFPIPAR--------------------------------------VHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred CCceEEEecccc--------------------------------------eeEeeeecc--eEEEeccccceeeeeeccE
Confidence 999988875332 777788655 7888888888999998653
Q ss_pred CcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 455 TKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 455 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
++...... ....++..|+..--.+++..|...++.+.
T Consensus 277 ---l~a~ip~~-s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 277 ---LQANIPVE-STACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ---EEEeccCC-ccceeeecccCCceEEEEecccceeeeee
Confidence 22222111 22244455543333444554777777766
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.6e-21 Score=187.81 Aligned_cols=247 Identities=19% Similarity=0.290 Sum_probs=195.2
Q ss_pred CCCeEEEEECCCCCe----EEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC-C
Q 010296 159 RQSVTAVALSEDDSK----GFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG-R 233 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~----l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~ 233 (513)
...-+.++|.+.+.. ||.|..||.|.+|+...-..- ...........|.+.|..+.|++.. +
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-------------~~~~~la~~~~h~G~V~gLDfN~~q~n 130 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-------------ASEEVLATKSKHTGPVLGLDFNPFQGN 130 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccC-------------cchHHHhhhcccCCceeeeeccccCCc
Confidence 456789999998776 888999999999998752000 0001122457899999999999965 5
Q ss_pred EEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCceeEEeecccC--CeE
Q 010296 234 YLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQS--EVL 308 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~ 308 (513)
+||+|+.+|.|.|||+..-+.-..+. .....|.+++|+..- +.|++++.+|.+.|||++..+.+..+..+.+ .+.
T Consensus 131 lLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 131 LLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred eeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 99999999999999998755444442 245679999998754 4577899999999999999888777765544 467
Q ss_pred EEEeeCCC--eEEEEeCC---CcEEEEecCCCee--eEEecCCCCeeEEEeecCC-e-EEEEeCCCCEEEEecCCCCeeE
Q 010296 309 TIDCLRKE--RVLTVGRD---RSMQLWKVPEESR--LVFRAPASSLECCCFISND-E-FLSGSDDGSIELWSLLRKKPVY 379 (513)
Q Consensus 309 ~~~~~~~~--~~~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~-~-~~~~~~dg~i~iwd~~~~~~~~ 379 (513)
.+.|+|+. ++++++.| -.|.+||++.... ..+..|...|.++.|.+.+ . +++++.|+.|.+|+..+++.+.
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 89999975 67776654 4699999876443 2567899999999999987 4 7799999999999999999988
Q ss_pred EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEecCCCcEEEEEeCCCC
Q 010296 380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGAGNGSVRLWAIESET 455 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~v~vwd~~~~~ 455 (513)
.+. ....|+..+.|+|... +|++++-||.|.||.+....
T Consensus 291 ~~p-------------------------------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 291 ELP-------------------------------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecC-------------------------------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 874 3446799999999665 88899999999999998763
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=9e-19 Score=163.92 Aligned_cols=273 Identities=13% Similarity=0.203 Sum_probs=178.8
Q ss_pred EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-Ccc
Q 010296 176 SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-LDRHIHLWDTR-IQE 253 (513)
Q Consensus 176 t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~-~~~ 253 (513)
+...++.|.+|++.+...+..+ ....+......++++|++++|++++ .++.|.+|++. ++.
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~-----------------~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~ 69 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLL-----------------QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA 69 (330)
T ss_pred EcCCCCCEEEEEECCCCceeee-----------------eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc
Confidence 4467899999999643221111 0012234567889999999987765 47889999986 333
Q ss_pred e--eeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCC-c---eeEEeecccCCeEEEEeeCCCeEE-EEe-CC
Q 010296 254 H--IQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDR-A---YISTLFGHQSEVLTIDCLRKERVL-TVG-RD 324 (513)
Q Consensus 254 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d 324 (513)
. +.... .......++|+|++++|++++. ++.|.+|++.+. . .+..+. +...+.+++++|+++++ +++ .+
T Consensus 70 l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 70 LTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred eEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCC
Confidence 2 22222 2345678999999999887764 889999999642 2 222222 23346778899988544 444 57
Q ss_pred CcEEEEecCCCeeeE-------EecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEecCC--CCe--eEEeecCCCcccCC
Q 010296 325 RSMQLWKVPEESRLV-------FRAPASSLECCCFISNDE-FLSGS-DDGSIELWSLLR--KKP--VYIVKNAHPLLDGL 391 (513)
Q Consensus 325 ~~i~iwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~ 391 (513)
+.|.+|++.+...+. ..........+.|+|++. ++++. .++.|.+|++.. ++. +..+... +.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-p~---- 222 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-PA---- 222 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-CC----
Confidence 999999997633221 112344567899999987 43444 489999999974 222 2222110 00
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeeecCcccEE
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYNLPLVGFV 470 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~v 470 (513)
. ..+..+...+.++|++++|+++.. ++.|.+|++......+......+.....
T Consensus 223 -----------------------~---~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p 276 (330)
T PRK11028 223 -----------------------D---FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP 276 (330)
T ss_pred -----------------------c---CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence 0 011123557899999999998854 6899999997654333333333222345
Q ss_pred EEEEeecCCCEEEEEecCCCcccccccC
Q 010296 471 NSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 471 ~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
..+.|+|+|++|+++...+++|.+|.+.
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6799999999999996678999999775
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.4e-21 Score=173.94 Aligned_cols=252 Identities=21% Similarity=0.290 Sum_probs=186.4
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR 233 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 233 (513)
++..|.+.|+.++|+|-...|++|+.||+|++|+++....- ......|...+.+|.++|.|+++.+++.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-----------~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-----------AEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-----------cccceeeeEEEecccCceEEEEecCCce
Confidence 67789999999999999999999999999999999431110 0111234456789999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCc----------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-
Q 010296 234 YLASGGLDRHIHLWDTRIQ----------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG- 302 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 302 (513)
++++|+.||+|+.|++... .....+.||...|+.+++++...+|++++.||+|++|+...... .++..
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 9999999999999976421 23456789999999999999999999999999999999876655 22322
Q ss_pred -ccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEec--------CCCCeeEEEeecCC-eEEEEeCCCCEEEE
Q 010296 303 -HQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRA--------PASSLECCCFISND-EFLSGSDDGSIELW 370 (513)
Q Consensus 303 -~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~-~~~~~~~dg~i~iw 370 (513)
..+...++.+-... ..++...-+.-.++++.....+.+.. ....+..+.+.|.+ ..+++..|+.|+++
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 22333455543322 22233333334444444443332221 11345556667766 46789999999999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
|..+++++.... .|...++++++.|+|.+|++++.||.|++|.
T Consensus 517 dn~~~~~l~s~~-------------------------------------a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 517 DNKTGKILHSMV-------------------------------------AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred cccccccchhee-------------------------------------eccceecceeecCCCceEEeecCCceeehhh
Confidence 999999887663 3344499999999999999999999999999
Q ss_pred eCCC
Q 010296 451 IESE 454 (513)
Q Consensus 451 ~~~~ 454 (513)
+...
T Consensus 560 ld~k 563 (577)
T KOG0642|consen 560 LDVK 563 (577)
T ss_pred ccch
Confidence 8765
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.8e-19 Score=156.52 Aligned_cols=230 Identities=17% Similarity=0.249 Sum_probs=176.2
Q ss_pred CCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCc-------ceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCc
Q 010296 215 RATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQ-------EHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRT 285 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 285 (513)
...+|..+|..++|+| +...||+|+.|.+|.||.+..+ +++..+.+|...|.-++|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 5678999999999999998654 3467788999999999999965 56889999999
Q ss_pred EEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe-cCC-CCeeEEEeecCCeEEEEe
Q 010296 286 VKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR-APA-SSLECCCFISNDEFLSGS 362 (513)
Q Consensus 286 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~~~ 362 (513)
|.+|++.+++.+.++. |...|+++.|+.+| .+++++.|..|+|||.+++..+... .|. .....+.|..++.+++.+
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999888887 99999999999988 5558899999999999999887443 333 344556777777766443
Q ss_pred ----CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296 363 ----DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA 438 (513)
Q Consensus 363 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 438 (513)
++..+-+||..+...-..+..... ...|.---|.++.++++
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDt-----------------------------------SnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDT-----------------------------------SNGVLLPFYDPDTSIVY 279 (472)
T ss_pred cccccccceeccCcccccCcceeEEecc-----------------------------------CCceEEeeecCCCCEEE
Confidence 578899999776432222211110 01144445667777665
Q ss_pred -EecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCC
Q 010296 439 -SGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQ 480 (513)
Q Consensus 439 -~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 480 (513)
+|-.|+.||.|.+......+..+..+....+-..+.|-|-..
T Consensus 280 l~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred EEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc
Confidence 455899999999998855566666666677777888887643
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=6.1e-20 Score=160.01 Aligned_cols=266 Identities=17% Similarity=0.197 Sum_probs=186.8
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
..+..|..|...|++|.|+|+|..||+|+.+|.|.+|....-... ....+.......+.......+|...|+.++|+
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhcc
Confidence 345678899999999999999999999999999999987641110 00000000011122223467899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee--------
Q 010296 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF-------- 301 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 301 (513)
|++.++++++.|..+++||+..|+....+..|...|..++|.|-++++++-+.|...+++.+...+.+....
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 999999999999999999999999999999999999999999999999999999877777765543322211
Q ss_pred --c---------cc----CCeEEEEeeCCCeEEEEe-----CCCc-----EEEEecCCCeee--EEecCCCCeeEEEee-
Q 010296 302 --G---------HQ----SEVLTIDCLRKERVLTVG-----RDRS-----MQLWKVPEESRL--VFRAPASSLECCCFI- 353 (513)
Q Consensus 302 --~---------~~----~~v~~~~~~~~~~~~~~~-----~d~~-----i~iwd~~~~~~~--~~~~~~~~v~~~~~~- 353 (513)
. |. .-...++|+|+|.++... ..+. .++|+-...... .+.........+.++
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 0 11 123456788888665322 1233 344443321111 222222233333332
Q ss_pred -----------------cCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc
Q 010296 354 -----------------SNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY 416 (513)
Q Consensus 354 -----------------~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 416 (513)
|-+.+++......|+|||..+..|+....+
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n--------------------------------- 339 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN--------------------------------- 339 (434)
T ss_pred eEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEee---------------------------------
Confidence 233334444566799999999999888763
Q ss_pred CCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 417 HSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 417 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.|...|+.++|+++|.+|+..|.||...+..+...
T Consensus 340 ---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 340 ---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ---eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 44556999999999999999999999888887765
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=2.4e-19 Score=171.11 Aligned_cols=259 Identities=15% Similarity=0.240 Sum_probs=188.2
Q ss_pred ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcce--eee
Q 010296 181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLASGGLDRHIHLWDTRIQEH--IQA 257 (513)
Q Consensus 181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~--~~~ 257 (513)
+.+.||++......... ..-...|+|++|+| +..+||.|+.+|.|.+||+..+.. ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~-------------------~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-------------------LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG 282 (555)
T ss_pred ceEEEEecCCCCCceEE-------------------EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc
Confidence 47899998876332211 23466799999999 567888899999999999987765 222
Q ss_pred ----ccCcCCCeEEEEEecCCCe--EEEEeCCCcEEEEeCCCCce-e-----EEee------cccCCeEEEEeeCC--Ce
Q 010296 258 ----FPGHRGPVSCLTFRQGTSE--LFSGSFDRTVKIWNAEDRAY-I-----STLF------GHQSEVLTIDCLRK--ER 317 (513)
Q Consensus 258 ----~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~--~~ 317 (513)
...|..+|+.+.|..+... +++++.||.|..|+++.-.. + .... .....++++.|.+. ..
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 2348899999999765544 99999999999998875332 1 1111 12346788899874 57
Q ss_pred EEEEeCCCcEEEEecC---CCe------eeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecC-CCCeeEEeecCC
Q 010296 318 VLTVGRDRSMQLWKVP---EES------RLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLL-RKKPVYIVKNAH 385 (513)
Q Consensus 318 ~~~~~~d~~i~iwd~~---~~~------~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~-~~~~~~~~~~~~ 385 (513)
|++|+..|.|..-+.. ... ...+..|.++|.++.++|-+. |++++ |.+++||... ...|+..+..
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~-- 439 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS-- 439 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh--
Confidence 8899999999874332 222 224567788999999999874 44554 9999999987 5666655532
Q ss_pred CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCc-ceeeeee
Q 010296 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETK-DIQPLYN 463 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~-~~~~~~~ 463 (513)
+...|++++|||.. ..|+++..+|.|.|||+..... +.....
T Consensus 440 -----------------------------------~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~- 483 (555)
T KOG1587|consen 440 -----------------------------------SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK- 483 (555)
T ss_pred -----------------------------------ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-
Confidence 22339999999976 4778888999999999976522 121111
Q ss_pred cCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 464 LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
......+.+.|+++|+.|++| ...|++.+|++..
T Consensus 484 -~~~~~l~~~~~s~~g~~lavG-d~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 -VCSPALTRVRWSPNGKLLAVG-DANGTTHILKLSE 517 (555)
T ss_pred -ccccccceeecCCCCcEEEEe-cCCCcEEEEEcCc
Confidence 135667888999999999999 9999999998853
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=152.63 Aligned_cols=239 Identities=15% Similarity=0.227 Sum_probs=179.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-------e-----eeecc-CcCCCeEEEEEe-------cCCCeEEEEeC
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQE-------H-----IQAFP-GHRGPVSCLTFR-------QGTSELFSGSF 282 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-------~-----~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~ 282 (513)
...+.|+|||..|++-+.|..+.+|++...- . ...++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568999999999999999999999975321 0 01111 123456667774 67788999999
Q ss_pred CCcEEEEeCCCCceeEEeec--ccC---CeEEEEeeCCCeEEEEeCCCcEEEEecC-CCeee---E-----EecCCCCee
Q 010296 283 DRTVKIWNAEDRAYISTLFG--HQS---EVLTIDCLRKERVLTVGRDRSMQLWKVP-EESRL---V-----FRAPASSLE 348 (513)
Q Consensus 283 dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~---~-----~~~~~~~v~ 348 (513)
+.-|++||.-+|+....+.+ |.. ...+++|+|+|..+.++....|++||+. .+... . ..+..+-+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 99999999999987666543 333 4578999999999999999999999993 33221 1 123356678
Q ss_pred EEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296 349 CCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS 426 (513)
Q Consensus 349 ~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 426 (513)
|++|+|.. .+++|+...++-||.-..+.++..+ .+|.+.|+
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-------------------------------------ggh~gGvT 254 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-------------------------------------GGHGGGVT 254 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeee-------------------------------------cccCCCee
Confidence 89999976 3889999999999999899998887 44555599
Q ss_pred EEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeeecCc-ccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 427 SVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 427 ~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
.++|+++|+.|++|+ .+-.|..||++.-..++-.+..... ...-.-....|++++|++| +.||.|++||...
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG-~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG-DTDGSVRVWDLKD 328 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc-CCCccEEEEecCC
Confidence 999999999999997 4678999999876555444443111 1222224556899999999 9999999999876
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2e-17 Score=161.79 Aligned_cols=287 Identities=31% Similarity=0.498 Sum_probs=222.2
Q ss_pred ccchhhhhccCCCeEEEEECCCCCeEEEEeC-CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASK-DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
......+..|...|.+++|+|++.++++++. ++.+++|++..+..+..+ .+|...|.+++
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~v~~~~ 205 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-------------------AGHTDPVSSLA 205 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee-------------------ccCCCceEEEE
Confidence 5666778899999999999999999998885 999999999986655533 45899999999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeeccc
Q 010296 228 VSSDGR-YLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFGHQ 304 (513)
Q Consensus 228 ~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~ 304 (513)
|+|++. .+++++.|+.|++||...+..+. .+.+|...+ ...|+|++.++++++.|+.+++|++..... +..+..|.
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 284 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCC
Confidence 999998 55555899999999988888887 688888876 448999998899999999999999987664 44446788
Q ss_pred CCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEe---cCCCCeeEEEeecC-CeEEEE-eCCCCEEEEecCCCCee
Q 010296 305 SEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFR---APASSLECCCFISN-DEFLSG-SDDGSIELWSLLRKKPV 378 (513)
Q Consensus 305 ~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~-~~~~~~-~~dg~i~iwd~~~~~~~ 378 (513)
..+.++.|.|++ .+++++.++.+.+|++......... .+...+..+.+.++ ..++.+ ..++.+.+|++......
T Consensus 285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 364 (466)
T COG2319 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364 (466)
T ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee
Confidence 899999999954 6667788888999998877655332 45556888888333 245544 67899999999887722
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE-ecCCCcEEEEEeCCCCcc
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS-GAGNGSVRLWAIESETKD 457 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g~~dg~v~vwd~~~~~~~ 457 (513)
...... ..+..+.+++ ...++. +..++.+.+|+.....
T Consensus 365 ~~~~~~--------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 403 (466)
T COG2319 365 KTLEGH--------------------------------------SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS-- 403 (466)
T ss_pred EEecCC--------------------------------------ceEEEEEECC-CCCEEEEecCCCceEEEecccCe--
Confidence 222111 1177888888 544444 6889999999998862
Q ss_pred eeeeeecCcc-cEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 458 IQPLYNLPLV-GFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 458 ~~~~~~~~~~-~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
........ ..+....+++++.+++.+ +.++.+++|+...
T Consensus 404 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 443 (466)
T COG2319 404 --LLRNLDGHTSRVTSLDFSPDGKSLASG-SSDNTIRLWDLKT 443 (466)
T ss_pred --eeeeccCCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeccC
Confidence 11111122 789999999999999987 8899999998876
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.7e-18 Score=165.58 Aligned_cols=293 Identities=16% Similarity=0.252 Sum_probs=202.6
Q ss_pred hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
..|+-.++|.++||+++++|+|..||.|.+|.--...... .....+.-|...|++++|+++|.+|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~---------------~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS---------------ETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccccccc---------------ccceEEEecccccceeEEecCCceE
Confidence 4578889999999999999999999999999744311100 0111345688899999999999999
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-----------cc
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG-----------HQ 304 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~ 304 (513)
++|+..|.+.+|.+.+++ .+-++.-.++|..+.++|++.+.+....|+.|.+....+.....++.+ ..
T Consensus 267 lSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred eecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccc
Confidence 999999999999999998 566777889999999999999999999999999998866544333322 23
Q ss_pred CCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEE------ecC------CCCeeEEEeecCCeEE-EEe--------
Q 010296 305 SEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRLVF------RAP------ASSLECCCFISNDEFL-SGS-------- 362 (513)
Q Consensus 305 ~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~------~~~------~~~v~~~~~~~~~~~~-~~~-------- 362 (513)
+-.+.+++.| .+.++..+..+.|.+||+-+...+.. ..+ .-.++.++.+..|.++ +.-
T Consensus 346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~ 425 (792)
T KOG1963|consen 346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNF 425 (792)
T ss_pred ccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhc
Confidence 3456778888 56778889999999999987655411 111 1234455555555432 321
Q ss_pred CC--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe-cCCC-EEE
Q 010296 363 DD--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC-GGSD-LAA 438 (513)
Q Consensus 363 ~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~-~l~ 438 (513)
.| -.+++|-......-..+...- ...|...+...++. +... .++
T Consensus 426 ~~~e~~LKFW~~n~~~kt~~L~T~I--------------------------------~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 426 FDGEVSLKFWQYNPNSKTFILNTKI--------------------------------NNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred cCceEEEEEEEEcCCcceeEEEEEE--------------------------------ecCCCceeEEEEEecCcccceeE
Confidence 22 245667655433222222100 02222223344433 3333 899
Q ss_pred EecCCCcEEEEEeCCCC------cce--eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 439 SGAGNGSVRLWAIESET------KDI--QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 439 ~g~~dg~v~vwd~~~~~------~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
+++.||.++||-+.... ... ..+..+ |..++++++|+.||..|+++ .+++|.+||..+
T Consensus 474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~dGslla~s--~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQDGSLLAVS--FDDTITIWDYDT 539 (792)
T ss_pred EeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCCCcEEEEe--cCCEEEEecCCC
Confidence 99999999999994431 111 122222 68899999999999877666 677999999877
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=154.41 Aligned_cols=258 Identities=18% Similarity=0.319 Sum_probs=186.1
Q ss_pred eccccCCCcccchhhhhccCCCeEEEEECC--CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCC
Q 010296 140 ASRVQKPEATDEFRVLLKHRQSVTAVALSE--DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRAT 217 (513)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (513)
..++++....+.+..+++|...++.+.|.. ....+.+|+.||+|++||+........+ ...
T Consensus 51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-----------------~~~ 113 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-----------------SWT 113 (376)
T ss_pred eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-----------------ecc
Confidence 345667777888999999999999999987 4667889999999999999987766544 223
Q ss_pred CCc-ccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCcce-eeec-cCcCCCeEEEEEecCC-CeEEEEeCCCcEEEE
Q 010296 218 KQS-KHILALAVSSDGRYLASGGL----DRHIHLWDTRIQEH-IQAF-PGHRGPVSCLTFRQGT-SELFSGSFDRTVKIW 289 (513)
Q Consensus 218 ~~~-~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 289 (513)
.+. .+..|++....++.+++|+. +-.|.+||++..+. +..+ ..|...|++++|+|.. +.|++|+.||.|.||
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 333 56778888778888888863 57899999987765 5544 4599999999999965 578899999999999
Q ss_pred eCCCCc----eeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeeeEEecCC--------------CCeeE
Q 010296 290 NAEDRA----YISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRLVFRAPA--------------SSLEC 349 (513)
Q Consensus 290 d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~ 349 (513)
|+.... ++.++ .+...|.++.|..++ ++.+.+...+..+|++..+......... .-|.
T Consensus 194 D~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~- 271 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN- 271 (376)
T ss_pred ecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-
Confidence 997642 23333 477789999999988 8889999999999999877644221111 0111
Q ss_pred EEeecCC--eEEEEeC-CCCEEEEecCC---C---CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCC
Q 010296 350 CCFISND--EFLSGSD-DGSIELWSLLR---K---KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSS 420 (513)
Q Consensus 350 ~~~~~~~--~~~~~~~-dg~i~iwd~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 420 (513)
+.+|.+ .++.++. -+...++-+.. + +.+..+. .+
T Consensus 272 -~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~------------------------------------g~ 314 (376)
T KOG1188|consen 272 -EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ------------------------------------GG 314 (376)
T ss_pred -cccCCCcceEEEeccccCceeEEEeeecccccccCcccccc------------------------------------CC
Confidence 122332 3443333 55555554432 1 1122222 33
Q ss_pred CcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296 421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~ 453 (513)
|...|.++.|...+.+++||+.||.|.+|....
T Consensus 315 ~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 315 HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 445588888988889999999999999999643
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=161.12 Aligned_cols=265 Identities=14% Similarity=0.178 Sum_probs=186.9
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
.|..-|.|+.|+.+...+++++.+..+.-|++.+........+.. .+. ..-|..+- +..=-.....|+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~p----------t~~h~~~r-s~~~g~~~d~~~ 79 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVP----------TDMHLGGR-SSGGGKGSDTLL 79 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-cCC----------cccccccc-ccCCCCCcceEE
Confidence 467777899999888777666655555555554433221111110 000 00110000 000001234688
Q ss_pred EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296 237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE 316 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 316 (513)
.++.||.+.+.+ +.++.-..+..|.+.+.+-.|+|+|.-|++++.||.|++|.- +|..-.++.....+|+|++|.|+.
T Consensus 80 i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 80 ICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNS 157 (737)
T ss_pred EEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCC
Confidence 888999999988 567888888999999999999999999999999999999984 555445555577789999999987
Q ss_pred eEEEEeCCCcEEEEecCCCe-eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296 317 RVLTVGRDRSMQLWKVPEES-RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF 394 (513)
Q Consensus 317 ~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
.-+.-+..+.+.+=.+..+. .+....|.+-|.++.|++... +++|+.|-..+|||.. |.+++.-
T Consensus 158 ~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S------------- 223 (737)
T KOG1524|consen 158 NSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS------------- 223 (737)
T ss_pred CceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-------------
Confidence 65555566777777776544 457889999999999999876 7799999999999954 4444332
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA 474 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~ 474 (513)
..|..+|++++|.|+ +.++.++.+ ++| ...+..+.|..++
T Consensus 224 ------------------------~~~ey~ITSva~npd-~~~~v~S~n-t~R--------------~~~p~~GSifnls 263 (737)
T KOG1524|consen 224 ------------------------AAEEYAITSVAFNPE-KDYLLWSYN-TAR--------------FSSPRVGSIFNLS 263 (737)
T ss_pred ------------------------Chhccceeeeeeccc-cceeeeeee-eee--------------ecCCCccceEEEE
Confidence 455666999999999 677777654 444 1223567899999
Q ss_pred eecCCCEEEEEecCC
Q 010296 475 FAKSGQFLIAGVGQE 489 (513)
Q Consensus 475 ~sp~~~~l~~~~~~d 489 (513)
|||||..+++|++..
T Consensus 264 WS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 264 WSADGTQATCGTSTG 278 (737)
T ss_pred EcCCCceeeccccCc
Confidence 999999999985543
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.2e-18 Score=169.20 Aligned_cols=296 Identities=17% Similarity=0.250 Sum_probs=211.4
Q ss_pred hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC--CC
Q 010296 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS--DG 232 (513)
Q Consensus 155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~ 232 (513)
+.+..++-..+.|+|-...++++...-.|+|||.+.++.+..+... ......|+.+.+-. |.
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~----------------~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG----------------AFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC----------------CCCCCccceeeeecccch
Confidence 3445557788899999999999998889999999998876654211 12345688898876 55
Q ss_pred CEEEEEeCCCcEEEEeCCC-----cceeeeccC-------cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296 233 RYLASGGLDRHIHLWDTRI-----QEHIQAFPG-------HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
.++++|+.||.|+||+-.. .+.+..+.+ ..+.-.-+.|.....+|++++.-..|+|||......+..+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 6899999999999997322 233332221 1111134577777777888777899999999988777665
Q ss_pred e-cccCCeEEEEeeC-C-CeEEEEeCCCcEEEEecCCCee----eEEecCCCC--eeEEEeecCCe--EEEEeCCCCEEE
Q 010296 301 F-GHQSEVLTIDCLR-K-ERVLTVGRDRSMQLWKVPEESR----LVFRAPASS--LECCCFISNDE--FLSGSDDGSIEL 369 (513)
Q Consensus 301 ~-~~~~~v~~~~~~~-~-~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~--v~~~~~~~~~~--~~~~~~dg~i~i 369 (513)
. +....|+++.... . +.+++|..||.|++||.+.... ...+.|... |..+.+.++|. +++|+.+|.|++
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 4 3344566666543 3 4666888999999999986543 256667666 89999988774 999999999999
Q ss_pred EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296 370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449 (513)
Q Consensus 370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw 449 (513)
||++.......+..... -...+.++++..++...++|+|+. +.|+||
T Consensus 1284 ~DlR~~~~e~~~~iv~~--------------------------------~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAH--------------------------------WEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred EecccCcccccceeeec--------------------------------cccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 99988521111110000 000113899999999999999998 899999
Q ss_pred EeCCCCcceeeeeec-----CcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 450 AIESETKDIQPLYNL-----PLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 450 d~~~~~~~~~~~~~~-----~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
++... .+..+... ...+.+.|++|+|-.-+||+| ..|.+|.||...+...
T Consensus 1331 ~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG-~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1331 SLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG-SADSTVSIYSCEKPRL 1385 (1387)
T ss_pred ecChh--hhcccccCcccccCcCCCcceeeecchhHhhhhc-cCCceEEEeecCCcCC
Confidence 99764 22222211 235678999999998888888 9999999998876643
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.7e-18 Score=161.99 Aligned_cols=327 Identities=19% Similarity=0.249 Sum_probs=233.2
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCC---CeEEEEeCCceEEEEeCCCCccccccCCCh------------------
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDD---SKGFSASKDGSILHWDVSSGKGVKYLWPSE------------------ 201 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~------------------ 201 (513)
++......+++.+..|..+++.+.+.|.. .++++++.+|.|++||...+..+.++....
T Consensus 41 VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~ 120 (792)
T KOG1963|consen 41 VYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANV 120 (792)
T ss_pred EEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcccee
Confidence 45667788899999999999999998865 467799999999999998776655331000
Q ss_pred ----------------------------------hhhccC---------CC-----------------------CCCCCC
Q 010296 202 ----------------------------------EVLKSH---------GA-----------------------KDPQGR 215 (513)
Q Consensus 202 ----------------------------------~~~~~~---------~~-----------------------~~~~~~ 215 (513)
..+... .. ......
T Consensus 121 ~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~ 200 (792)
T KOG1963|consen 121 YVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI 200 (792)
T ss_pred EeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchh
Confidence 000000 00 001112
Q ss_pred CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--c--ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296 216 ATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI--Q--EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 216 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 291 (513)
...|...++|.++||+++++|+|..||.|.+|.--. + .....+.=|...|++++|+++|.+|++|+..|.+.+|.+
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 345667789999999999999999999999996322 1 234556668899999999999999999999999999999
Q ss_pred CCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeE------------EecCCCCeeEEEeec-CCe
Q 010296 292 EDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLV------------FRAPASSLECCCFIS-NDE 357 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~------------~~~~~~~v~~~~~~~-~~~ 357 (513)
.+++ .+-+..-.++|..+.++|++.+. .+..|+.|.+..+.+..... ......-.+.+++.| .+.
T Consensus 281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 9988 44556678899999999998655 67789999999875543321 111234456778888 456
Q ss_pred EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296 358 FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA 437 (513)
Q Consensus 358 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 437 (513)
++..+..|.|.+||+.+...++.+....... .++. ..+...++.++.+..|.++
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~------------------~~~~--------~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENY------------------SDGD--------VNIQVGITAVARSRFGSWM 413 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecc------------------cCCc--------ceeEEeeeeehhhccceEE
Confidence 8889999999999999988877765432210 0000 1233448888888889999
Q ss_pred EEec--------CC--CcEEEEEeCCCCcceee--eeecCcccEEEEEEeecC-CC-EEEEEecCCCccccccc
Q 010296 438 ASGA--------GN--GSVRLWAIESETKDIQP--LYNLPLVGFVNSLAFAKS-GQ-FLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 438 ~~g~--------~d--g~v~vwd~~~~~~~~~~--~~~~~~~~~v~~v~~sp~-~~-~l~~~~~~dg~v~~W~~ 497 (513)
+|.- .| -.+++|......+.... ....||...+...+|.+. .. .++++ +.||.+++|-.
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta-~~dg~~KiW~~ 486 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA-SVDGDFKIWVF 486 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe-ccCCeEEEEEE
Confidence 9873 22 36899998876444333 334567666665555543 33 56666 99999999977
No 185
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=161.69 Aligned_cols=305 Identities=16% Similarity=0.182 Sum_probs=223.3
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
.....|..|.+.|+.|.|+..|..|++|+.|..|.+||+..+.....+ ..+|...|....|-
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKFI 194 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------------------ccccccchhhhhcc
Confidence 344567899999999999999999999999999999999988877654 46888889888998
Q ss_pred CC--CCEEEEEeCCCcEEEEeCCC-cce--eeeccCcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCCCceeEEe---
Q 010296 230 SD--GRYLASGGLDRHIHLWDTRI-QEH--IQAFPGHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAEDRAYISTL--- 300 (513)
Q Consensus 230 ~~--~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~--- 300 (513)
|. ...+++++.||.|++=.+.. +.+ ...+..|.++|.-++.-|+..+ |++++.|+.+.-+|+++......+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence 84 45799999999999887643 332 3445569999999999997755 889999999999999987654333
Q ss_pred ecccC---CeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-------EE------ecCCCCeeEEEeecCC-eEEEE
Q 010296 301 FGHQS---EVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-------VF------RAPASSLECCCFISND-EFLSG 361 (513)
Q Consensus 301 ~~~~~---~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-------~~------~~~~~~v~~~~~~~~~-~~~~~ 361 (513)
..+.. ...+++..|.+ .+++++.|..+++||.+.-... .+ ......|+|++++.++ .++++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 22333 45778888843 6779999999999998653221 11 1234578999999665 58888
Q ss_pred eCCCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE-ecCCCEEE
Q 010296 362 SDDGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV-CGGSDLAA 438 (513)
Q Consensus 362 ~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~ 438 (513)
..|-.|+++.-..+.- ....... ..+....|........|..+-| -|...|++
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~------------------------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVv 410 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPR------------------------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVV 410 (559)
T ss_pred ecccceEEeccccccCCCCCCCcch------------------------hhccchhhcccccccccceeeeccCccceEE
Confidence 8888899984332211 0000000 0001111222333344777765 56788999
Q ss_pred EecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 439 SGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 439 ~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
+|+.-|.|.||+-.++ +.+..+..- ...|+||.-+|--+.||++ |-|.-|+||.....
T Consensus 411 SGSDCGhIFiW~K~t~-eii~~MegD--r~VVNCLEpHP~~PvLAsS-Gid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 411 SGSDCGHIFIWDKKTG-EIIRFMEGD--RHVVNCLEPHPHLPVLASS-GIDHDVKIWTPLTA 468 (559)
T ss_pred ecCccceEEEEecchh-HHHHHhhcc--cceEeccCCCCCCchhhcc-CCccceeeecCCcc
Confidence 9999999999998887 556656553 3389999999999999999 99999999976443
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.4e-18 Score=144.88 Aligned_cols=207 Identities=20% Similarity=0.277 Sum_probs=162.6
Q ss_pred chhhhh-ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccc-cccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 151 EFRVLL-KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGV-KYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 151 ~~~~~~-~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
++..|. .|-+.|.|+.|.|++..|++-. |..|.+|++..+..+ ..+.. . ....|....++-+|
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s-------s-------~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-------S-------ESAEMRHSFTSGAW 178 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc-------c-------ccccccceeccccc
Confidence 344444 5667999999999999998776 789999999987763 22210 0 11235667888999
Q ss_pred cC--CCCEEEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecCCCe-EEEEeCCCcEEEEeCCC-CceeEEeecc
Q 010296 229 SS--DGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQGTSE-LFSGSFDRTVKIWNAED-RAYISTLFGH 303 (513)
Q Consensus 229 s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 303 (513)
+| +++.+++.+ ++++..||+++......+. .|...|..+.|+|+.++ |++|+.||.|+|||.+. ..++..+.+|
T Consensus 179 spHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H 257 (370)
T KOG1007|consen 179 SPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH 257 (370)
T ss_pred CCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence 99 788887766 8999999999888776664 58889999999998765 77999999999999986 4568889999
Q ss_pred cCCeEEEEeeC--CCeEEEEeCCCcEEEEecCCC------------------------------eeeEEecCCCCeeEEE
Q 010296 304 QSEVLTIDCLR--KERVLTVGRDRSMQLWKVPEE------------------------------SRLVFRAPASSLECCC 351 (513)
Q Consensus 304 ~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~------------------------------~~~~~~~~~~~v~~~~ 351 (513)
...|+++.|+| +..+++++.|..|.+|....- ....+..|...|.+++
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence 99999999999 456679999999999975321 1113556788999999
Q ss_pred eecCC--eEEEEeCCCCEEEEecC
Q 010296 352 FISND--EFLSGSDDGSIELWSLL 373 (513)
Q Consensus 352 ~~~~~--~~~~~~~dg~i~iwd~~ 373 (513)
|+.-. .|++-+.||.+.|=.+.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCC
Confidence 99876 48899999999886654
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.3e-17 Score=131.83 Aligned_cols=209 Identities=18% Similarity=0.278 Sum_probs=157.6
Q ss_pred chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcc---ccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKG---VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
++-..++|.++|+.++|+ ..+|++|+ ||.|+=|....... .+.+|.. ..|...-...--.|+++.
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~---------~~P~~~~~~evPeINam~ 121 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEV---------KIPMQVDAVEVPEINAMW 121 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhh---------cCccccCcccCCccceeE
Confidence 344458999999999998 35677776 59999998765432 1112211 111111122234589999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc---
Q 010296 228 VSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ--- 304 (513)
Q Consensus 228 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 304 (513)
+.|..+-++.++.|+.++-||+++|+..+.+++|+..|.++.-......+++|+.||++++||+++++++.++....
T Consensus 122 ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 122 LDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN 201 (325)
T ss_pred eccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh
Confidence 99987777777789999999999999999999999999999996666789999999999999999999988774321
Q ss_pred -------CCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296 305 -------SEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR 374 (513)
Q Consensus 305 -------~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~ 374 (513)
..|.+++. +...++|+....+.+|.++.........-...+..+.|..+ .+++++..+.|.-|.+..
T Consensus 202 ~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 202 LLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred hcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeecc
Confidence 12344443 45677888888999999999888877777778888877654 567777788888888643
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.2e-17 Score=159.57 Aligned_cols=247 Identities=18% Similarity=0.261 Sum_probs=178.7
Q ss_pred ccCCCeEEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC--C
Q 010296 157 KHRQSVTAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG--R 233 (513)
Q Consensus 157 ~h~~~V~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~ 233 (513)
.-...|+|+.|+|. ..+|+.|+.+|.|.+||+..+...... ........|..+|+.+.|..+. .
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEeccCCCC
Confidence 45788999999995 566778889999999999887652100 0111345789999999997754 4
Q ss_pred EEEEEeCCCcEEEEeCCCcce-e-----eecc------CcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCc-----
Q 010296 234 YLASGGLDRHIHLWDTRIQEH-I-----QAFP------GHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRA----- 295 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----- 295 (513)
-|++++.||.|..|+++.-.. + .... .....+++++|.+.. ..++.|+..|.|..-+-...+
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 499999999999998764322 1 1111 123468899998754 568899999998874433221
Q ss_pred ---eeEEeecccCCeEEEEeeCCC-e-EEEEeCCCcEEEEecC-CCeee-EEecCCCCeeEEEeecCC--eEEEEeCCCC
Q 010296 296 ---YISTLFGHQSEVLTIDCLRKE-R-VLTVGRDRSMQLWKVP-EESRL-VFRAPASSLECCCFISND--EFLSGSDDGS 366 (513)
Q Consensus 296 ---~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~d~~i~iwd~~-~~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~dg~ 366 (513)
....+..|.++|+++.++|=. . |++++ |-+++||... ...++ .+..+...+++++|+|.. .|+++..+|.
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 133456688999999999943 4 44555 9999999987 44444 455556669999999986 4889999999
Q ss_pred EEEEecCCC--CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296 367 IELWSLLRK--KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG 444 (513)
Q Consensus 367 i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg 444 (513)
|.|||+... .|+...... ....+.+.|++.|++|++|...|
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~-------------------------------------~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVC-------------------------------------SPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred eehhhhhccccCCccccccc-------------------------------------ccccceeecCCCCcEEEEecCCC
Confidence 999999754 344333222 22378888999999999999999
Q ss_pred cEEEEEeCCC
Q 010296 445 SVRLWAIESE 454 (513)
Q Consensus 445 ~v~vwd~~~~ 454 (513)
.+.+|++...
T Consensus 509 ~~~~~~l~~~ 518 (555)
T KOG1587|consen 509 TTHILKLSES 518 (555)
T ss_pred cEEEEEcCch
Confidence 9999999653
No 189
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=157.75 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=132.5
Q ss_pred chhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296 151 EFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230 (513)
Q Consensus 151 ~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 230 (513)
.-..|.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+ .++|...|.++.|-|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI------------------~TgHtaNIFsvKFvP 103 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI------------------STGHTANIFSVKFVP 103 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee------------------ecccccceeEEeeec
Confidence 34578899999999999999999999999999999999877777654 579999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEeCCC----------cceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCCce-
Q 010296 231 --DGRYLASGGLDRHIHLWDTRI----------QEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDRAY- 296 (513)
Q Consensus 231 --~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~- 296 (513)
+.+.+++|..|..|+++|+.. ...+..+..|...|..|+..|++ +.+.+++.||+|+-||++....
T Consensus 104 ~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 104 YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 567899999999999999974 23455667799999999999998 6688999999999999986321
Q ss_pred ---------eEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecC
Q 010296 297 ---------ISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVP 333 (513)
Q Consensus 297 ---------~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~ 333 (513)
+..+....-...|+..+|.. .|++|+.+-..++||.+
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 11111222345677777743 56678888888888854
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=7.8e-17 Score=134.72 Aligned_cols=271 Identities=17% Similarity=0.264 Sum_probs=192.5
Q ss_pred CCeEEEEECC--C-CCeEEEEeC----CceEEEEeCC--CCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296 160 QSVTAVALSE--D-DSKGFSASK----DGSILHWDVS--SGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230 (513)
Q Consensus 160 ~~V~~~~~s~--~-~~~l~t~~~----dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 230 (513)
-+++++.|+. + +-+||.|+. .+.|.|-.+. +++.+.. ....|.-+++.+.|.|
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~tK~~wiP 106 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPVTKLMWIP 106 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCccceEecC
Confidence 4688899984 2 456787773 4566665554 2222211 1257889999999999
Q ss_pred CC-----CEEEEEeCCCcEEEEeCCCc--ce--eee-----ccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCc
Q 010296 231 DG-----RYLASGGLDRHIHLWDTRIQ--EH--IQA-----FPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 231 ~~-----~~l~s~~~dg~i~vwd~~~~--~~--~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
+. .+||+++ -.+++|.+... +. ... -..+.++++++.|+. +-++|.+++-|-+..|||+.++.
T Consensus 107 d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~ 184 (364)
T KOG0290|consen 107 DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV 184 (364)
T ss_pred CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc
Confidence 76 3566655 47999998632 21 111 123677899999976 45678899999999999999873
Q ss_pred e---eEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee--EEecC--CCCeeEEEeecCCe--EEEEe-C
Q 010296 296 Y---ISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL--VFRAP--ASSLECCCFISNDE--FLSGS-D 363 (513)
Q Consensus 296 ~---~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~--~~~~~--~~~v~~~~~~~~~~--~~~~~-~ 363 (513)
. ...+-.|...|..++|..++ .|+++|.||.+++||++..... .+..+ ..+...++|+++.- +++-. .
T Consensus 185 ~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 185 SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD 264 (364)
T ss_pred ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence 3 56677899999999999854 6779999999999999875433 33333 45778888888763 55433 4
Q ss_pred CCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEec
Q 010296 364 DGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGA 441 (513)
Q Consensus 364 dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~ 441 (513)
...|.|.|++.. .++..+ ..|.+.|+.++|.|.. ..|++++
T Consensus 265 S~~V~iLDiR~P~tpva~L-------------------------------------~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARL-------------------------------------RNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred CceEEEEEecCCCcceehh-------------------------------------hcCcccccceEecCCCCceeeecC
Confidence 467999999875 344444 3455559999999965 6899999
Q ss_pred CCCcEEEEEeCCCCc--ceeeeeecCcccEEEEEEeecC-CCEEEEEec
Q 010296 442 GNGSVRLWAIESETK--DIQPLYNLPLVGFVNSLAFAKS-GQFLIAGVG 487 (513)
Q Consensus 442 ~dg~v~vwd~~~~~~--~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~ 487 (513)
.|..+.|||+..... ...++..+...+.|+.+.|+|. ..+++.+.+
T Consensus 308 DD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 308 DDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 999999999987532 1223333346788999999964 567777744
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=2e-19 Score=170.13 Aligned_cols=243 Identities=18% Similarity=0.306 Sum_probs=191.7
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
.+.+|.+.|+|+.|...|.++++|+.|..++||.+.+..++...++|.+.|+.++.+.+..++++++.|..|++|.+.++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 45789999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE-----ecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296 295 AYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF-----RAPASSLECCCFISNDE-FLSGSDDGSIE 368 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~~~~~~dg~i~ 368 (513)
.++..+.+|.+.|++++|+|-. +.+.||++++||.+-...... ......+.++.|-.++. +++++.++.-.
T Consensus 265 ~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred chHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 9999999999999999999854 778899999999982222111 11223455566666664 88999999888
Q ss_pred EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEecCCCcEE
Q 010296 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGAGNGSVR 447 (513)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~~dg~v~ 447 (513)
.|.+......... +.-+.++.+ ..+.+++-.+-.++
T Consensus 342 n~e~~~l~~~~~~-------------------------------------------lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNL-------------------------------------------LIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred cchhhHhhhhccc-------------------------------------------eEEEeccccccccceeeeeeeEee
Confidence 8875432211100 111111111 14666677788899
Q ss_pred EEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceE
Q 010296 448 LWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVL 506 (513)
Q Consensus 448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~ 506 (513)
+|++.++ ...+.+.. |...+..+.++|-+..++...|.||...|||.-.+.+...+
T Consensus 379 vwnl~~g-~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 379 VWNLYTG-QLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred eeecccc-hhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 9999988 44454544 77889999999999998888899999999999887665444
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=5e-17 Score=160.45 Aligned_cols=318 Identities=14% Similarity=0.122 Sum_probs=206.7
Q ss_pred ccchhhhhccCCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
+..+..+..|...|..++.++.. .+++|||.||+|++|++.......... ....++......+.++.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------rS~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------RSELTYSPEGSRVEKVT 1105 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee------------eeeEEEeccCCceEEEE
Confidence 45667788899999999998865 999999999999999987533221000 00011222467799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCcc-------eeeeccCc-CCCe-EEEEEecC-C-CeEEEEeCCCcEEEEeCCCCce
Q 010296 228 VSSDGRYLASGGLDRHIHLWDTRIQE-------HIQAFPGH-RGPV-SCLTFRQG-T-SELFSGSFDRTVKIWNAEDRAY 296 (513)
Q Consensus 228 ~s~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~-~~~v-~~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~ 296 (513)
+.+.+..+|+++.||.|.+.++.... +......+ .+.+ ..-+|... . ..|+.+...+.|..||+++...
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 99999999999999999999987521 11112222 2223 33344332 2 3677888899999999998766
Q ss_pred eEEee--cccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEe--cCCCCeeEEEeecC---C-e-EEEEe-CCC
Q 010296 297 ISTLF--GHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFR--APASSLECCCFISN---D-E-FLSGS-DDG 365 (513)
Q Consensus 297 ~~~~~--~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~---~-~-~~~~~-~dg 365 (513)
+..++ ...+.|++++..|.+. +++|...|.+.+||++-+..+... .+..++..+...|- . . +.+++ ..+
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 55543 3567899999999765 558888999999999987766333 33455665555442 2 2 33444 678
Q ss_pred CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc
Q 010296 366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS 445 (513)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~ 445 (513)
.|.+|++.+|.+.+++....... .+....+.. .....+.-.....++...+.++++|+.|..
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p-~ls~~~Ps~-----------------~~~kp~~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAP-ILSYALPSN-----------------DARKPDSLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCc-chhhhcccc-----------------cCCCCCcccceeeecccCCceeeecCCccc
Confidence 89999999998877776542211 000000000 000111122334445555678999999999
Q ss_pred EEEEEeCCCCcc-eee------------------e----------------------------------eecCcccEEEE
Q 010296 446 VRLWAIESETKD-IQP------------------L----------------------------------YNLPLVGFVNS 472 (513)
Q Consensus 446 v~vwd~~~~~~~-~~~------------------~----------------------------------~~~~~~~~v~~ 472 (513)
||.||....... ... + ....|..+|++
T Consensus 1328 IR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itd 1407 (1431)
T KOG1240|consen 1328 IRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITD 1407 (1431)
T ss_pred eeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhh
Confidence 999998654211 000 0 00024567888
Q ss_pred EEeecCCCEEEEEecCCCcccccc
Q 010296 473 LAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 473 v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
+++....+-|+++++.||.|++|.
T Consensus 1408 ma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1408 MATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhccCccEEEEecCCCeeeecC
Confidence 988877666666669999999994
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=1.9e-16 Score=136.92 Aligned_cols=236 Identities=15% Similarity=0.220 Sum_probs=168.4
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC--CcEEEEeCCCCcee
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD--RTVKIWNAEDRAYI 297 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~ 297 (513)
...+..+.|..+...|..|+.+| .++|....-............|--+-|+. .+++..+.+ +.+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 34577788999999999999888 56777664433222222333455555654 456555544 45999999888777
Q ss_pred EEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe----cCCCCeeEEEeecCCe-EE--EEeCCCCEEEE
Q 010296 298 STLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR----APASSLECCCFISNDE-FL--SGSDDGSIELW 370 (513)
Q Consensus 298 ~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~-~~--~~~~dg~i~iw 370 (513)
..+. ....|.++.++.+ +++++-.+ .|+|||++..+.+... .+...+..+++++.+. ++ .....|.|.||
T Consensus 82 Ce~~-fpt~IL~VrmNr~-RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEe-cCCceEEEEEccc-eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 6665 6778899988654 44444443 4999999998877321 2334455555555554 44 34567999999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc-EEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS-VRLW 449 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-v~vw 449 (513)
|+.+.+++..+. .|.+.+.+++|+++|.+|||+|..|+ |||+
T Consensus 159 d~~nl~~v~~I~-------------------------------------aH~~~lAalafs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 159 DTINLQPVNTIN-------------------------------------AHKGPLAALAFSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred EcccceeeeEEE-------------------------------------ecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence 999999999885 44455999999999999999999997 6999
Q ss_pred EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
.+.++. .+..+..-.....|.+++|+|++++|+++ |..++|.++.+...
T Consensus 202 ~v~~G~-kl~eFRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 202 SVPEGQ-KLYEFRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEKV 250 (391)
T ss_pred EcCCcc-EeeeeeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEeccc
Confidence 999983 33334332235679999999999999988 88889999977654
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=5.3e-16 Score=145.23 Aligned_cols=265 Identities=9% Similarity=0.134 Sum_probs=166.5
Q ss_pred cCCCeEEEEECCCCCeEEEEe-CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 158 HRQSVTAVALSEDDSKGFSAS-KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
+.+....++++|++++|++++ .++.|.+|++.....+... . ..........++|+|++++|+
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~-------~----------~~~~~~~p~~i~~~~~g~~l~ 95 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA-------A----------ESPLPGSPTHISTDHQGRFLF 95 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-------e----------eecCCCCceEEEECCCCCEEE
Confidence 346678899999999988764 5788999999732111111 0 001122456899999999988
Q ss_pred EEeC-CCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeE-------Eeecc
Q 010296 237 SGGL-DRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYIS-------TLFGH 303 (513)
Q Consensus 237 s~~~-dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-------~~~~~ 303 (513)
+++. ++.|.+|++.+.. .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+. .+. .
T Consensus 96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~ 173 (330)
T PRK11028 96 SASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-E 173 (330)
T ss_pred EEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-C
Confidence 8764 7899999986432 223332 334567789999999986554 56999999997633221 111 2
Q ss_pred cCCeEEEEeeCCCeEE-EEeC-CCcEEEEecCC--Cee--e-EEecC------CCCeeEEEeecCCe-EEEE-eCCCCEE
Q 010296 304 QSEVLTIDCLRKERVL-TVGR-DRSMQLWKVPE--ESR--L-VFRAP------ASSLECCCFISNDE-FLSG-SDDGSIE 368 (513)
Q Consensus 304 ~~~v~~~~~~~~~~~~-~~~~-d~~i~iwd~~~--~~~--~-~~~~~------~~~v~~~~~~~~~~-~~~~-~~dg~i~ 368 (513)
......+.|+|+++++ ++.. ++.|.+|++.. +.. . ..... ......+.++|+++ ++++ ..++.|.
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 3346789999998655 5544 89999999973 222 1 11111 11223578899987 4444 3578999
Q ss_pred EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEE
Q 010296 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVR 447 (513)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~ 447 (513)
+|++........+..... . ......+.|+|+|++|+++.. +++|.
T Consensus 254 v~~i~~~~~~~~~~~~~~--------------------------------~--~~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQP--------------------------------T--ETQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred EEEEeCCCCeEEEeEEEe--------------------------------c--cccCCceEECCCCCEEEEEEccCCcEE
Confidence 999865432111111000 0 011457899999999998775 89999
Q ss_pred EEEeCCCCcceeeeeecCcccEEEEEEe
Q 010296 448 LWAIESETKDIQPLYNLPLVGFVNSLAF 475 (513)
Q Consensus 448 vwd~~~~~~~~~~~~~~~~~~~v~~v~~ 475 (513)
+|++......+..+..+.......+++|
T Consensus 300 v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 300 VYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEEcCCCCcEEEccccccCCCceEEEE
Confidence 9998654333444433333334455555
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=135.75 Aligned_cols=309 Identities=12% Similarity=0.113 Sum_probs=201.0
Q ss_pred EEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE-eCCC
Q 010296 164 AVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG-GLDR 242 (513)
Q Consensus 164 ~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg 242 (513)
-++|||+|+++|+++.- .+.|-|..+.+..+.+ ..-..|.-+.|..+.-+++++ ..++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--------------------~cldki~yieW~ads~~ilC~~yk~~ 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--------------------LCLDKIVYIEWKADSCHILCVAYKDP 71 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--------------------HHHHHhhheeeeccceeeeeeeeccc
Confidence 46899999999999875 7888888877665533 123457789999988877765 5678
Q ss_pred cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEE
Q 010296 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV 321 (513)
Q Consensus 243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 321 (513)
.|.+|++...+-...+.....++.+++|+|+|+.|+ +...+-.|.+|.+.+.+.... .-....+..++|+|+|++.+.
T Consensus 72 ~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 72 KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred eEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeee
Confidence 999999998888888888889999999999997655 666789999999988765543 223445688899999987754
Q ss_pred eC--CC-----------------------------------cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC
Q 010296 322 GR--DR-----------------------------------SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSD 363 (513)
Q Consensus 322 ~~--d~-----------------------------------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 363 (513)
.. |. .+.+||-.-.-.+......-++..+.|+|.++ +++|+.
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence 32 11 11222211111111112235678899999776 669999
Q ss_pred CCCEEEEecCCCCeeEEeecCCCcc------------------cCCCCcccCcCccccccCCCCC----CCCCCc-----
Q 010296 364 DGSIELWSLLRKKPVYIVKNAHPLL------------------DGLKNFEQDEGKISNGHSENGN----LNPGSY----- 416 (513)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~i~~~~~~~~~----~~~~~~----- 416 (513)
|+.++|.+--+.++...+-...... -....+.+.+-....+...... ..+..+
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 9999998877666554433211100 0001111111111111110000 000000
Q ss_pred --CCCCCcceEEEEEEecCCCEEEEecCC--CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcc
Q 010296 417 --HSSSAYSWVSSVTVCGGSDLAASGAGN--GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRL 492 (513)
Q Consensus 417 --~~~~~~~~i~~~~~s~~~~~l~~g~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v 492 (513)
........+.-++||+|..+++|-... +.+.+||++.. +....+....+|....|.|....|+.+.| ..++
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~piraf~WdP~~prL~vctg-~srL 385 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKHPIRAFEWDPGRPRLVVCTG-KSRL 385 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhccceeEEEeCCCCceEEEEcC-CceE
Confidence 012223457889999999999987643 68999999876 22222235678999999999999998844 4479
Q ss_pred cccccCC
Q 010296 493 GRWGHLP 499 (513)
Q Consensus 493 ~~W~~~~ 499 (513)
.+|....
T Consensus 386 Y~W~psg 392 (447)
T KOG4497|consen 386 YFWAPSG 392 (447)
T ss_pred EEEcCCC
Confidence 9996543
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=8.8e-19 Score=155.38 Aligned_cols=263 Identities=13% Similarity=0.181 Sum_probs=208.6
Q ss_pred CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296 160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239 (513)
Q Consensus 160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 239 (513)
-.-+.+.|+.+|++|+.|+.-|.|-.+|+.++.....+ .-...|..+.|-.+..+||++-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhhh
Confidence 34578999999999999999999999999999877655 2345688999998888888776
Q ss_pred CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296 240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319 (513)
Q Consensus 240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 319 (513)
...++||| ..|..++.++.| ..|..+.|.|..-+|++++..|.++--|+.+|+.+..+....+.+..+.-+|-+-++
T Consensus 190 -K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 190 -KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVI 266 (545)
T ss_pred -hceEEEec-CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceE
Confidence 57899999 567888888855 578999999998889999999999999999999999998888899999999977666
Q ss_pred -EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCccc
Q 010296 320 -TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQ 396 (513)
Q Consensus 320 -~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
+|...|+|.+|.......+ .+..|.++|.++++.++|+ +++.+.|..++|||+++...+.++...++
T Consensus 267 h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~---------- 336 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP---------- 336 (545)
T ss_pred EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC----------
Confidence 8889999999999887766 6788999999999999997 77999999999999999877666654333
Q ss_pred CcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC-C-cceeeeeecCcccEEEEEE
Q 010296 397 DEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE-T-KDIQPLYNLPLVGFVNSLA 474 (513)
Q Consensus 397 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~-~-~~~~~~~~~~~~~~v~~v~ 474 (513)
...++||..| +||.+-.+ .|.||.=... . ..-.+.......++|..+.
T Consensus 337 ----------------------------a~~ls~Sqkg-lLA~~~G~-~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~ 386 (545)
T KOG1272|consen 337 ----------------------------ASNLSLSQKG-LLALSYGD-HVQIWKDALKGSGHGETPYMNHRCGGPVEDLR 386 (545)
T ss_pred ----------------------------cccccccccc-ceeeecCC-eeeeehhhhcCCCCCCcchhhhccCcccccce
Confidence 6778888765 45544444 7999963222 1 1111222212356899999
Q ss_pred eecCCCEEEEE
Q 010296 475 FAKSGQFLIAG 485 (513)
Q Consensus 475 ~sp~~~~l~~~ 485 (513)
|+|-...|-+|
T Consensus 387 FcP~EDvLGIG 397 (545)
T KOG1272|consen 387 FCPYEDVLGIG 397 (545)
T ss_pred eccHHHeeecc
Confidence 99965555444
No 197
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.5e-17 Score=153.04 Aligned_cols=264 Identities=16% Similarity=0.228 Sum_probs=179.9
Q ss_pred ECCCCCeEEE--EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCEEEEEeCCCc
Q 010296 167 LSEDDSKGFS--ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRYLASGGLDRH 243 (513)
Q Consensus 167 ~s~~~~~l~t--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~ 243 (513)
|+.+..++|+ .+.-|.|-||++.....+-- ..+. -......|+.+.|.| |...||+++.||.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD-----gv~p----------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~ 651 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD-----GVMP----------GLFNGTLVTDLHWDPFDDERLAVATDDGQ 651 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc-----cccc----------ccccCceeeecccCCCChHHeeecccCce
Confidence 3344555653 46679999999976543210 0010 112355699999999 7788999999999
Q ss_pred EEEEeCCCcc-------eeeeccCcCCCeEEEEEecC-CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 244 IHLWDTRIQE-------HIQAFPGHRGPVSCLTFRQG-TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 244 i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
|++|.+..+. +-..+..|...|+++.|+|- ...|++++.|-+|++||+.+++....+.+|.+.|..++|+|+
T Consensus 652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 9999987543 34567889999999999994 457889999999999999999999999999999999999999
Q ss_pred CeE-EEEeCCCcEEEEecCCCeeeEEecCC---CCeeEEEeecCCe-EEEEe----CCCCEEEEecCCC--CeeEEeecC
Q 010296 316 ERV-LTVGRDRSMQLWKVPEESRLVFRAPA---SSLECCCFISNDE-FLSGS----DDGSIELWSLLRK--KPVYIVKNA 384 (513)
Q Consensus 316 ~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~-~~~~~----~dg~i~iwd~~~~--~~~~~~~~~ 384 (513)
|+. ++.+.||+|++|..+........+.. ..-..+.|.-+|+ +++.+ +...|.+|+..+. .++++....
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD 811 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD 811 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence 954 59999999999999877655443322 2334567777776 33333 3456888887653 344443211
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC-CEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS-DLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
.... +.--.+.+|. -+|++|-.|..|.+|.+-.....+..+..
T Consensus 812 vaps------------------------------------~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~ 855 (1012)
T KOG1445|consen 812 VAPS------------------------------------PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAP 855 (1012)
T ss_pred ccCc------------------------------------cccccccCCCceEEEecCCCceEEEEEecCCCceeeeccc
Confidence 1100 0001122333 46788889999999999876555555444
Q ss_pred cCcccEEEEEEeecCCCE
Q 010296 464 LPLVGFVNSLAFAKSGQF 481 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~ 481 (513)
+.....-..++|.+..+.
T Consensus 856 f~sp~~hqGl~fl~K~~C 873 (1012)
T KOG1445|consen 856 FMSPVGHQGLAFLQKLKC 873 (1012)
T ss_pred ccCCCcccceeeeccccc
Confidence 322333345666655443
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=2.7e-15 Score=129.93 Aligned_cols=280 Identities=13% Similarity=0.182 Sum_probs=199.5
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
...|+.+.|+.+...|..|+.||. ++|......... ........|.-+-|+ ..++|..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~-------------------~~~~~~~~IvEmLFS--SSLvaiV 62 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCF-------------------SKDTEGVSIVEMLFS--SSLVAIV 62 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhh-------------------cccCCCeEEEEeecc--cceeEEE
Confidence 456788889999999999999984 777776543311 112223446667776 4466655
Q ss_pred eCC--CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc---cCCeEEEEee
Q 010296 239 GLD--RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH---QSEVLTIDCL 313 (513)
Q Consensus 239 ~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~ 313 (513)
+.+ ..+++++++.+..+..+. ....|.++.++. ++|+++-.+ .|+|||+++.+.+.++... ...+.+++++
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred ecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccC
Confidence 544 459999998888777766 556788998875 457666554 4999999999998887543 3445666666
Q ss_pred CCCe-EE--EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCC-EEEEecCCCCeeEEeecCCCc
Q 010296 314 RKER-VL--TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGS-IELWSLLRKKPVYIVKNAHPL 387 (513)
Q Consensus 314 ~~~~-~~--~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 387 (513)
+.+. ++ .....|.|.+||+.+-+.. .+..|.+.+.+++|+++|. +++++..|+ ||||.+.+|+.++.+.....
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~- 217 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY- 217 (391)
T ss_pred CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-
Confidence 5553 43 2335799999999887766 6779999999999999997 778888886 79999999999999875332
Q ss_pred ccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcce-e-------
Q 010296 388 LDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDI-Q------- 459 (513)
Q Consensus 388 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~-~------- 459 (513)
...|.+++|+|++++|++.+..++|.||.+....... .
T Consensus 218 ----------------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~ 263 (391)
T KOG2110|consen 218 ----------------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTS 263 (391)
T ss_pred ----------------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCc
Confidence 3349999999999999999999999999996531000 0
Q ss_pred -------eee--------------------ecCcccEEEEEEee--cCCCEEEEEecCCCcccccccCCC
Q 010296 460 -------PLY--------------------NLPLVGFVNSLAFA--KSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 460 -------~~~--------------------~~~~~~~v~~v~~s--p~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
... .++..+.-..+.+. +..+++.++ +.||.+..+.+...
T Consensus 264 ~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~va-s~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 264 WFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVA-SYDGHLYSYRLPPK 332 (391)
T ss_pred ccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEE-EcCCeEEEEEcCCC
Confidence 000 00111111334444 466778888 89999999988764
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.5e-16 Score=134.82 Aligned_cols=303 Identities=15% Similarity=0.184 Sum_probs=188.7
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLAS 237 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s 237 (513)
.-.+..++|++--..+|++..|-+|++|+-.. +....+ .......|+|++|-|. +..|++
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L------------------ks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL------------------KSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee------------------cchhhcceeEEEeccCCcceeee
Confidence 45578899999767788999999999999776 332222 1234567999999995 456777
Q ss_pred EeCCCcEEEEeCCCc----ce----------eeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCceeEEeec
Q 010296 238 GGLDRHIHLWDTRIQ----EH----------IQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 302 (513)
|+. +-|.+|..... .. +...++| .+|++|.|.++|..+++++. +..|.|||..++..+.....
T Consensus 159 gCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 159 GCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred eec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc
Confidence 775 45999975421 11 2223445 68999999999999998875 67899999999987766655
Q ss_pred ccCCeEEEEeeCCC-eEEEEeCCCcEEEEecC-CCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296 303 HQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVP-EESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 303 ~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
..+.+.-+.|+|++ .++++..|+..++|+.. +..........+.|...+|+|.|.++.-...|.-++|.+.-...-..
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV 316 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc
Confidence 67788899999998 56688899999999553 33333344445589999999999855433444556666543221111
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC--------CcEEEEEeC
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN--------GSVRLWAIE 452 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d--------g~v~vwd~~ 452 (513)
+............ .......+... .....+.+.+++|.|.|.+||+.-.. +.|.+||..
T Consensus 317 ~~~~~~~k~~lli----------aDL~e~ti~ag---~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 317 FLRPQSIKRVLLI----------ADLQEVTICAG---QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred ccCcccceeeeee----------ccchhhhhhcC---cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 1100000000000 00000000000 02234558999999999999987543 347777776
Q ss_pred CCCcceeee-eecCcccEEEEEEeec---CCCEEEEEecCCCccccccc
Q 010296 453 SETKDIQPL-YNLPLVGFVNSLAFAK---SGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 453 ~~~~~~~~~-~~~~~~~~v~~v~~sp---~~~~l~~~~~~dg~v~~W~~ 497 (513)
.. ..+... ..+.......-+.|+| +|.+|.++ =..|.+.-|.+
T Consensus 384 ~s-p~vels~cg~i~ge~P~~IsF~pl~n~g~lLsia-WsTGriq~ypl 430 (445)
T KOG2139|consen 384 KS-PPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIA-WSTGRIQRYPL 430 (445)
T ss_pred cc-CceEEEecccccCCCCceEEeeecccCCcEEEEE-eccCceEeeee
Confidence 54 122211 1111222244566665 46666666 55567766644
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.8e-17 Score=141.40 Aligned_cols=253 Identities=17% Similarity=0.180 Sum_probs=183.9
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------cceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEE
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI------QEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVK 287 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 287 (513)
.+.+|.+.|.+|.|+.++++|++|+.|..+++|++.. .+++..... |...|.|++|....+.|++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3568999999999999999999999999999999753 344444433 568999999999999999999999999
Q ss_pred EEeCCCCceeEEeec--ccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEEEeecCC--eE
Q 010296 288 IWNAEDRAYISTLFG--HQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECCCFISND--EF 358 (513)
Q Consensus 288 iwd~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~--~~ 358 (513)
..|+.+.+.+..+.. ..+.|+.+..+| ++.|++.+.++.|.+||.+... .............+.|+|.. .+
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999988877752 335899999999 5678899999999999998655 22333344567788898876 37
Q ss_pred EEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEE
Q 010296 359 LSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLA 437 (513)
Q Consensus 359 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 437 (513)
++.+..+-+.+||.+..+ ++......... ......-.++.|+|+|..|
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L-------------------------------~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGL-------------------------------PQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccC-------------------------------cccchhhhheeeCCCCCee
Confidence 788889999999987653 22221110000 0101114577899999988
Q ss_pred EEecCCCcEEEEEeCCCCcceeeee----ecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 438 ASGAGNGSVRLWAIESETKDIQPLY----NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 438 ~~g~~dg~v~vwd~~~~~~~~~~~~----~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
++--....-.+||+.+....+.... .+-....+.+++|.-|-. +++| +++-.|.+|.+...
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tG-SD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATG-SDHWGIHIWKLPRA 324 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eecc-CcccceEEEecCCC
Confidence 8877666778889887522221111 111234577888876644 6677 89999999977543
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2e-17 Score=145.56 Aligned_cols=194 Identities=19% Similarity=0.221 Sum_probs=155.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec-
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG- 302 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 302 (513)
.+++|+++|..|++|+.||++|||++.+...+.....|...|.++.|+|||++|++.+.| ..+||++.++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888899999999999999999999999 999999999977666542
Q ss_pred -ccCCeEEEEeeCCC-----eEEE-EeCCCcEEEEecCCCee------eEEecCCCCeeEEEeecCCe-EEEEeCCCCEE
Q 010296 303 -HQSEVLTIDCLRKE-----RVLT-VGRDRSMQLWKVPEESR------LVFRAPASSLECCCFISNDE-FLSGSDDGSIE 368 (513)
Q Consensus 303 -~~~~v~~~~~~~~~-----~~~~-~~~d~~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~ 368 (513)
.......+.|..++ ++++ ....+.|+.|++..... .........|.+++++++|+ ++.|+.+|.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22234566676655 3332 23456677766643222 12333456899999999998 55899999999
Q ss_pred EEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296 369 LWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL 448 (513)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v 448 (513)
|++..+.+.++.++..| ...|+.+.|+|+.+++++.+.+..+.|
T Consensus 307 i~~~~~lq~~~~vk~aH------------------------------------~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAH------------------------------------LGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEeceeeeeEeehhhh------------------------------------eeeeeeEEEcCCcCcccccccCCceeE
Confidence 99999999888887544 445999999999999999999999999
Q ss_pred EEeCCC
Q 010296 449 WAIESE 454 (513)
Q Consensus 449 wd~~~~ 454 (513)
..+.-.
T Consensus 351 ~~l~vd 356 (398)
T KOG0771|consen 351 TKLAVD 356 (398)
T ss_pred EEEeec
Confidence 888653
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=3.8e-17 Score=147.60 Aligned_cols=209 Identities=15% Similarity=0.207 Sum_probs=166.8
Q ss_pred CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010296 172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI 251 (513)
Q Consensus 172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~ 251 (513)
..|+.++.||.+.|.+-. ++... ....|.+.|.+-.|+|+|.-|++++.||.|++|. ++
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rs 134 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RS 134 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-cc
Confidence 468888999999987643 33332 2468999999999999999999999999999998 56
Q ss_pred cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEE
Q 010296 252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLW 330 (513)
Q Consensus 252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iw 330 (513)
|-...++.....+|.|++|.|+.+.++.+. .+++.|=-+.....+-..+.|.+-|.++.|++.. .+++++.|-..++|
T Consensus 135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEee
Confidence 776666766788999999999987766553 4677887777777777888999999999999976 45599999999999
Q ss_pred ecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296 331 KVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN 410 (513)
Q Consensus 331 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 410 (513)
|...........|..+|++++|.|+..|+.++. .++++=
T Consensus 214 D~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~---------------------------------------- 252 (737)
T KOG1524|consen 214 DAQGANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFS---------------------------------------- 252 (737)
T ss_pred cccCcccccCChhccceeeeeeccccceeeeee-eeeeec----------------------------------------
Confidence 988877777888999999999999955666654 334421
Q ss_pred CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
....+.|..++||+||..+++|+..|.|.+=.+
T Consensus 253 --------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 253 --------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred --------CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 111223999999999999999999998766443
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=9.8e-17 Score=141.24 Aligned_cols=198 Identities=20% Similarity=0.334 Sum_probs=145.3
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEec--
Q 010296 266 SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRA-- 342 (513)
Q Consensus 266 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~-- 342 (513)
.+++|+++|..|++++.||+++||+..+...+.....|...|.++.|+|++.++ +.+.+ ..+||+..++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988877777778899999999999999655 77777 99999999885553322
Q ss_pred -CCCCeeEEEeecCC-----eEE-EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC
Q 010296 343 -PASSLECCCFISND-----EFL-SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS 415 (513)
Q Consensus 343 -~~~~v~~~~~~~~~-----~~~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 415 (513)
.......|.|+.++ +++ .-..-+.|+.|++...+--..++....
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~----------------------------- 277 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK----------------------------- 277 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh-----------------------------
Confidence 23345566777665 333 333456677776644322111110000
Q ss_pred cCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 416 YHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 416 ~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
......|++++.|++|++++.|+.||.|-|++..+. +.++... ..|...|+.|.|+|+.+++++. +.+....+-
T Consensus 278 ---~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l-q~~~~vk-~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~ 351 (398)
T KOG0771|consen 278 ---IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL-QRLQYVK-EAHLGFVTGLTFSPDSRYLASV-SSDNEAAVT 351 (398)
T ss_pred ---hhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee-eeeEeeh-hhheeeeeeEEEcCCcCccccc-ccCCceeEE
Confidence 111122999999999999999999999999999876 3333332 2388899999999999999996 777777777
Q ss_pred ccCC
Q 010296 496 GHLP 499 (513)
Q Consensus 496 ~~~~ 499 (513)
.+.-
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 6544
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=1.3e-16 Score=135.34 Aligned_cols=210 Identities=17% Similarity=0.155 Sum_probs=162.3
Q ss_pred CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEE
Q 010296 146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL 224 (513)
Q Consensus 146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (513)
....+..+++..|...|++|+|+|..+.|++|+.|..-+||.. ..++-..+ ..+..++...+
T Consensus 42 ~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt-----------------lvLlRiNrAAt 104 (361)
T KOG1523|consen 42 ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT-----------------LVLLRINRAAT 104 (361)
T ss_pred CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc-----------------eeEEEecccee
Confidence 3446778999999999999999999999999999999999998 44433222 24567889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCccee----eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-----C--
Q 010296 225 ALAVSSDGRYLASGGLDRHIHLWDTRIQEHI----QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-----D-- 293 (513)
Q Consensus 225 ~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-- 293 (513)
++.|+|..+.||+|+....|.||-++...-- +.-+.+...|+++.|+|++-+|++|+.|+..+|+..- .
T Consensus 105 ~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp 184 (361)
T KOG1523|consen 105 CVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP 184 (361)
T ss_pred eEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC
Confidence 9999999999999999999999987644321 2223467889999999999999999999999998641 1
Q ss_pred -----------CceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCCeEE
Q 010296 294 -----------RAYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISNDEFL 359 (513)
Q Consensus 294 -----------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~ 359 (513)
|+.+..+....+.+..+.|+|+| +++-.+.|..+.+-|..... ........-+..++.|.....++
T Consensus 185 ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 185 APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVV 264 (361)
T ss_pred CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCcee
Confidence 22233343567789999999987 66689999999999987764 33344444677888888887788
Q ss_pred EEeCCCCEEEEec
Q 010296 360 SGSDDGSIELWSL 372 (513)
Q Consensus 360 ~~~~dg~i~iwd~ 372 (513)
.++.|..-.++..
T Consensus 265 ~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 265 AAGYDCGPVLFVT 277 (361)
T ss_pred ecCCCCCceEEEe
Confidence 8877755444443
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.2e-16 Score=142.89 Aligned_cols=275 Identities=12% Similarity=0.154 Sum_probs=196.8
Q ss_pred ccCCCeEEEEECCCCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 157 KHRQSVTAVALSEDDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
.|...-+.|..+|||+|++ ||..-..|++||+........- ..-...|.-.-++-|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------hlDae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------HLDAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------cccccceeEEEeccchhhh
Confidence 5788899999999999876 6778899999999876543211 1113345555566665566
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
+.-..|.+|-+...........++ ..-..|+++.-..-|++++....|+-+++..|+.+..+....+.++++..++-
T Consensus 110 v~L~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~ 186 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE 186 (703)
T ss_pred eEeecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc
Confidence 666667777765432111111122 22345666544444666777778999999999999998888899999999996
Q ss_pred CeEE-EEeCCCcEEEEecCCCeeeEEe-------cCC-----CCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296 316 ERVL-TVGRDRSMQLWKVPEESRLVFR-------APA-----SSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 316 ~~~~-~~~~d~~i~iwd~~~~~~~~~~-------~~~-----~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
..|+ +|+.+|.|-+||.+........ .+. ..|+++.|+.+|. +++|+..|.|.|||+++.+|+..-
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK 266 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec
Confidence 5554 6667999999999887654211 122 2489999999885 889999999999999999998776
Q ss_pred ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC--CCEEEEecCCCcEEEEEeCCCCccee
Q 010296 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG--SDLAASGAGNGSVRLWAIESETKDIQ 459 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~g~~dg~v~vwd~~~~~~~~~ 459 (513)
..... -+|..+.|.+. ++.+++.. ...++|||-.++ .
T Consensus 267 dh~~e------------------------------------~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~G----k 305 (703)
T KOG2321|consen 267 DHGYE------------------------------------LPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTG----K 305 (703)
T ss_pred ccCCc------------------------------------cceeeecccccCCCceEEecc-hHHhhhcccccC----C
Confidence 53332 23888888775 45566554 458999999988 3
Q ss_pred eeeecCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 460 PLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 460 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
++..+.....++.+++-|++.+++++ ..++.+..|
T Consensus 306 ~~asiEpt~~lND~C~~p~sGm~f~A-ne~~~m~~y 340 (703)
T KOG2321|consen 306 PMASIEPTSDLNDFCFVPGSGMFFTA-NESSKMHTY 340 (703)
T ss_pred ceeeccccCCcCceeeecCCceEEEe-cCCCcceeE
Confidence 34444456669999999999999999 777666655
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.7e-16 Score=153.05 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=156.4
Q ss_pred CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcce--
Q 010296 180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEH-- 254 (513)
Q Consensus 180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~-- 254 (513)
+..|.+||...... .. +..|...+.+.+|+|+|+.|+.++.+ ..|++||+.+++.
T Consensus 183 ~~~i~i~d~dg~~~-~~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FI-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCc-eE-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 47899999876542 22 24567789999999999999987654 4699999988754
Q ss_pred eeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEE--EeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEE
Q 010296 255 IQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKI--WNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQL 329 (513)
Q Consensus 255 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i 329 (513)
+..+.+| ...++|+|+|+.|+.++ .+|.+.| ||+.++. +..+..+...+....|+|++. ++.++ .++...+
T Consensus 243 l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I 318 (429)
T PRK01742 243 VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQV 318 (429)
T ss_pred EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceE
Confidence 3334443 34689999999888764 6776555 4666655 445556677788999999986 44343 5678888
Q ss_pred EecCCCe-eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCC
Q 010296 330 WKVPEES-RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSE 407 (513)
Q Consensus 330 wd~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 407 (513)
|.+.... ......+.. ....|+|+|. ++..+.+ .+.+||+.+++....... ..
T Consensus 319 ~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~-~~--------------------- 373 (429)
T PRK01742 319 YRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSST-FL--------------------- 373 (429)
T ss_pred EEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCC-CC---------------------
Confidence 8764322 112222222 4578999986 5455544 566799988765432211 00
Q ss_pred CCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC-CcceeeeeecCcccEEEEEEeecC
Q 010296 408 NGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE-TKDIQPLYNLPLVGFVNSLAFAKS 478 (513)
Q Consensus 408 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~-~~~~~~~~~~~~~~~v~~v~~sp~ 478 (513)
...+.|+|+|++|++++.+|.+.+|.+.+. ....+.+.. +.+.+..++|+|-
T Consensus 374 -----------------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~--~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 -----------------DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG--SDGQVKFPAWSPY 426 (429)
T ss_pred -----------------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC--CCCCCCCcccCCC
Confidence 345679999999999999998988887431 133444432 5677888999985
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=3.1e-16 Score=133.00 Aligned_cols=238 Identities=16% Similarity=0.179 Sum_probs=174.3
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-C-
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-R- 294 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~- 294 (513)
..+|+|.+|+++...+|++.....|.||...... ..+++..|...|+++.|+|..+.|++|+.|..-++|.... +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 5679999999999999999999999999876554 6788899999999999999999999999999999999843 3
Q ss_pred -ceeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee-----EEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296 295 -AYISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL-----VFRAPASSLECCCFISNDE-FLSGSDDGS 366 (513)
Q Consensus 295 -~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~~~~~~dg~ 366 (513)
++...+..+...++++.|+|.. +|++++....|.||-+....-. ......+.|.++.|+|++- +++|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 3344556688999999999975 6778888899999988765543 3445567899999999996 669999999
Q ss_pred EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcE
Q 010296 367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSV 446 (513)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v 446 (513)
.+||..-- +.+..... . .+-++++ +-|.+.. ......+++..+.|+|+|..|+-.+.|..|
T Consensus 170 ~rVfSayI----K~Vdekpa-p------~pWgsk~-----PFG~lm~---E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 170 CRVFSAYI----KGVDEKPA-P------TPWGSKM-----PFGQLMS---EASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred eeEEEEee----eccccCCC-C------CCCccCC-----cHHHHHH---hhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 99997421 11111000 0 0000000 0000000 002456789999999999999999999999
Q ss_pred EEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296 447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKS 478 (513)
Q Consensus 447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 478 (513)
.+-|.....+.++.+.. ..-+..++.|-..
T Consensus 231 ~~~da~~p~~~v~~~~~--~~lP~ls~~~ise 260 (361)
T KOG1523|consen 231 SFVDAAGPSERVQSVAT--AQLPLLSVSWISE 260 (361)
T ss_pred EEeecCCCchhccchhh--ccCCceeeEeecC
Confidence 99998776433333332 1245566666544
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=4.2e-16 Score=130.44 Aligned_cols=244 Identities=18% Similarity=0.210 Sum_probs=176.3
Q ss_pred ccEEEEEEcC---CCCEEEEEeC----CCcEEEEeCC--Ccceeeec-cCcCCCeEEEEEecCCC-----eEEEEeCCCc
Q 010296 221 KHILALAVSS---DGRYLASGGL----DRHIHLWDTR--IQEHIQAF-PGHRGPVSCLTFRQGTS-----ELFSGSFDRT 285 (513)
Q Consensus 221 ~~v~~~~~s~---~~~~l~s~~~----dg~i~vwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~l~~~~~dg~ 285 (513)
-+++++.|+. ...+|+.|+. .+.|.|..+. +++.+..- ..|..+++.+.|.|+.. +|+++ +-.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 3578888884 2447888874 4566666543 44443221 24889999999999763 34443 347
Q ss_pred EEEEeCCCC--ce--eEEe-----ecccCCeEEEEeeC-C-CeEEEEeCCCcEEEEecCCCe----eeEEecCCCCeeEE
Q 010296 286 VKIWNAEDR--AY--ISTL-----FGHQSEVLTIDCLR-K-ERVLTVGRDRSMQLWKVPEES----RLVFRAPASSLECC 350 (513)
Q Consensus 286 i~iwd~~~~--~~--~~~~-----~~~~~~v~~~~~~~-~-~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~ 350 (513)
+++|.+... +. ...+ ..+..+++++.|+. + ..+.+.+-|-++.|||+.++. ...+..|...|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999998732 11 1111 23566899999987 3 355588899999999999863 33678999999999
Q ss_pred EeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296 351 CFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV 428 (513)
Q Consensus 351 ~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 428 (513)
+|..++. |++.+.||.+|+||++...-...+... .....+...+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~----------------------------------p~~~~pLlRL 248 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED----------------------------------PSPSTPLLRL 248 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecC----------------------------------CCCCCcceee
Confidence 9999664 899999999999999987644444321 1113347888
Q ss_pred EEecCC-CEEEEecCC-CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 429 TVCGGS-DLAASGAGN-GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 429 ~~s~~~-~~l~~g~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
+|++.. ++|||-..| ..|.|.|++....++..+.. |.+.|++++|.|....-++++|+|..+.+||+..-.+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 898744 677776655 56999999988777777766 9999999999998776555559999999999876554
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=9.2e-15 Score=136.24 Aligned_cols=297 Identities=11% Similarity=0.075 Sum_probs=183.8
Q ss_pred CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296 146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA 225 (513)
Q Consensus 146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (513)
....+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+..+ .-.....+
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i--------------------~~G~~~~~ 82 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI--------------------KVGGNPRG 82 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE--------------------E-SSEEEE
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE--------------------ecCCCcce
Confidence 3444455555544444455789999999999999999999999999988765 22344788
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEeCCCcceeeeccCc-------CCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCce
Q 010296 226 LAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQAFPGH-------RGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRAY 296 (513)
Q Consensus 226 ~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~ 296 (513)
+++|++|+++++++ ..+.+.++|..+.+++..+... ...+.++..+|....++..-. .+.|.+.|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999998776 5799999999999998877543 346778888888886655544 58888889876544
Q ss_pred eE-EeecccCCeEEEEeeCCCeEE-E-EeCCCcEEEEecCCCeeeEEec-----CCCCeeEE-------Eeec--CCe-E
Q 010296 297 IS-TLFGHQSEVLTIDCLRKERVL-T-VGRDRSMQLWKVPEESRLVFRA-----PASSLECC-------CFIS--NDE-F 358 (513)
Q Consensus 297 ~~-~~~~~~~~v~~~~~~~~~~~~-~-~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~-------~~~~--~~~-~ 358 (513)
+. .............|.|+++++ + ....+.|-++|..++....... |..++..+ .|.. .+. .
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 32 233345567788999998544 4 3457789999998887663321 11122211 1211 122 2
Q ss_pred EEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEE
Q 010296 359 LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAA 438 (513)
Q Consensus 359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 438 (513)
++.-....+.+|+....+.+..+..... -.-+..+|+++++.
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~--------------------------------------glFi~thP~s~~vw 284 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGG--------------------------------------GLFIKTHPDSRYVW 284 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSS--------------------------------------S--EE--TT-SEEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCC--------------------------------------cceeecCCCCccEE
Confidence 2333344667899999999998875322 25577799999999
Q ss_pred Ee----cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC-cccccccCCCcc
Q 010296 439 SG----AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP-RLGRWGHLPAAR 502 (513)
Q Consensus 439 ~g----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg-~v~~W~~~~~~~ 502 (513)
+. ...++|.|+|..+. .....+... ....+..+.|+++|+++.++.-... .|.+||..+-..
T Consensus 285 vd~~~~~~~~~v~viD~~tl-~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTL-KVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGT-EEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred eeccCCCCCceEEEEECcCc-ceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 88 45589999999887 222333211 1234889999999998877755544 899999877643
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=7.5e-16 Score=150.06 Aligned_cols=272 Identities=18% Similarity=0.234 Sum_probs=181.6
Q ss_pred ccCCCcccchhhhhcc---CCCeEEEEECC--CCCeEEEEeCCceEEEEeCCCCc-cccccCCChhhhccCCCCCCCCCC
Q 010296 143 VQKPEATDEFRVLLKH---RQSVTAVALSE--DDSKGFSASKDGSILHWDVSSGK-GVKYLWPSEEVLKSHGAKDPQGRA 216 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h---~~~V~~~~~s~--~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (513)
+|+-+....+..+..+ ...|+.+.+-. |..++++|+.||.|+||+---.. .... .+.....- ....
T Consensus 1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e------LVTaw~~L--s~~~ 1161 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE------LVTAWSSL--SDQL 1161 (1387)
T ss_pred EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCce------eEEeeccc--cccC
Confidence 3444444444444433 45688888855 56789999999999999743221 1110 01110000 0011
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEe-cCCCeEEEEeCCCcEEEEeCCCC
Q 010296 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
.+..+.-.-+.|.....+|++++.-..|+|||.....++..+.. ....|+++.-+ ..|+.+++|..||.|++||.+..
T Consensus 1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence 11122225578888777777777788999999998887776654 33456666543 35789999999999999999864
Q ss_pred c---eeEEeecccCC--eEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee---EEecC---CCCeeEEEeecCCe-EEE
Q 010296 295 A---YISTLFGHQSE--VLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL---VFRAP---ASSLECCCFISNDE-FLS 360 (513)
Q Consensus 295 ~---~~~~~~~~~~~--v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~---~~~~~---~~~v~~~~~~~~~~-~~~ 360 (513)
. .+...+.|... |..+.+.+.| .+++++.+|.|++||++..... ....+ .+.++++.+++... +++
T Consensus 1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence 3 46667778776 9999998865 6899999999999999985322 11222 22488899988876 456
Q ss_pred EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296 361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG 440 (513)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g 440 (513)
|+. +.|.||++...+ +..++...... ....+.+.|++|+|..-+||+|
T Consensus 1322 Gs~-q~ikIy~~~G~~-l~~~k~n~~F~------------------------------~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQ-LNIIKYNPGFM------------------------------GQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cCc-ceEEEEecChhh-hcccccCcccc------------------------------cCcCCCcceeeecchhHhhhhc
Confidence 655 999999976543 33332111100 2222347999999999999999
Q ss_pred cCCCcEEEEEeCCC
Q 010296 441 AGNGSVRLWAIESE 454 (513)
Q Consensus 441 ~~dg~v~vwd~~~~ 454 (513)
+.|.+|.||.....
T Consensus 1370 ~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKP 1383 (1387)
T ss_pred cCCceEEEeecCCc
Confidence 99999999997664
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.5e-16 Score=131.20 Aligned_cols=248 Identities=16% Similarity=0.209 Sum_probs=166.3
Q ss_pred cCCCcccchhhhh-ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 144 QKPEATDEFRVLL-KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 144 ~~~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
|........-.+. .|+..|+.+.--|+ ..|.+-+.|+.+.+|++..+..+. -|.-.
T Consensus 40 w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~----------------------i~Si~ 96 (323)
T KOG0322|consen 40 WVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS----------------------IHSIV 96 (323)
T ss_pred EEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE----------------------Eeeee
Confidence 4444444445555 67889999999998 568899999999999998755432 12223
Q ss_pred EEEEEEcCC-----CC----EEEEEeCC-CcEEEEeCCCcceeeecc----CcCCCeEEEEEec-CCC--eEEEEeCCCc
Q 010296 223 ILALAVSSD-----GR----YLASGGLD-RHIHLWDTRIQEHIQAFP----GHRGPVSCLTFRQ-GTS--ELFSGSFDRT 285 (513)
Q Consensus 223 v~~~~~s~~-----~~----~l~s~~~d-g~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~-~~~--~l~~~~~dg~ 285 (513)
+.++-|.+. ++ .++.-+.. ..+.+-|......+.... +..+.+.|..+.. ++. +|++|..+|.
T Consensus 97 ~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsgh 176 (323)
T KOG0322|consen 97 VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGH 176 (323)
T ss_pred ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCe
Confidence 334444321 11 11111110 012222222111222211 2345666666432 333 3568888999
Q ss_pred EEEEeCCCCce----------eEEeecccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCCC--eee---EEecCCCCeeE
Q 010296 286 VKIWNAEDRAY----------ISTLFGHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEE--SRL---VFRAPASSLEC 349 (513)
Q Consensus 286 i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~--~~~---~~~~~~~~v~~ 349 (513)
|.+||+.++.. ......|..+|.++.+.+. .+=++++.+..+..|++... ... ........+..
T Consensus 177 vv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~g 256 (323)
T KOG0322|consen 177 VVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSG 256 (323)
T ss_pred EEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccc
Confidence 99999998733 3334568899999999763 35567788888999988643 221 23344556788
Q ss_pred EEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296 350 CCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV 428 (513)
Q Consensus 350 ~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 428 (513)
+.+-|+++ +++++.|+.||||..++..++..++.+ ...|+++
T Consensus 257 vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-------------------------------------sagvn~v 299 (323)
T KOG0322|consen 257 VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-------------------------------------SAGVNAV 299 (323)
T ss_pred eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-------------------------------------hcceeEE
Confidence 88999997 679999999999999999999988543 3449999
Q ss_pred EEecCCCEEEEecCCCcEEEEEe
Q 010296 429 TVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 429 ~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
+|+|+..++|+++.|++|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=1.5e-17 Score=147.72 Aligned_cols=228 Identities=17% Similarity=0.223 Sum_probs=181.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296 221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
...+.+.++.+|++|+.|+..|.|-.+|+.++++...+. -...|..+.|..+.++++++ ....++|||- .|..++.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeeh
Confidence 346789999999999999999999999999999888776 45678899998887766665 5678999995 56667777
Q ss_pred ecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeE-EEEeCCCCEEEEecCCCCe
Q 010296 301 FGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEF-LSGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~-~~~~~dg~i~iwd~~~~~~ 377 (513)
. ....|..+.|.|--.|+ +++..|.++.-|+.+++.+ .+....+.+..++-+|-+-+ -+|...|+|.+|......+
T Consensus 207 k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 207 K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred h-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 6 44678999999987655 7778999999999999877 45556667777888887764 4999999999999999988
Q ss_pred eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc
Q 010296 378 VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD 457 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~ 457 (513)
+..+ ..|.++|.+|++.++|+|+||.+.|..|+|||++.-. .
T Consensus 286 LvKi-------------------------------------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-q 327 (545)
T KOG1272|consen 286 LVKI-------------------------------------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-Q 327 (545)
T ss_pred HHHH-------------------------------------HhcCCCcceEEECCCCcEEeecccccceeEeeecccc-c
Confidence 8776 3455569999999999999999999999999998873 3
Q ss_pred eeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
+..+.. ..+...++||..| +||++ ....|.||.
T Consensus 328 l~t~~t---p~~a~~ls~Sqkg-lLA~~--~G~~v~iw~ 360 (545)
T KOG1272|consen 328 LHTYRT---PHPASNLSLSQKG-LLALS--YGDHVQIWK 360 (545)
T ss_pred cceeec---CCCcccccccccc-ceeee--cCCeeeeeh
Confidence 333332 3456778888665 44444 334788994
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=4.8e-14 Score=119.86 Aligned_cols=234 Identities=12% Similarity=0.215 Sum_probs=164.4
Q ss_pred eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EEeC
Q 010296 162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SGGL 240 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~ 240 (513)
..+++|+.|...+++|..+| .+||+++--+..... ......-.+.-+-|- .++|+ +|+.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-----------------~~~~~G~~~veMLfR--~N~laLVGGg 67 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-----------------QFIDGGFKIVEMLFR--SNYLALVGGG 67 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-----------------ccccCchhhhhHhhh--hceEEEecCC
Confidence 44599999999888888766 799998753221110 000111122223332 33443 3433
Q ss_pred C------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-CCceeEEeeccc--CCeEEEE
Q 010296 241 D------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-DRAYISTLFGHQ--SEVLTID 311 (513)
Q Consensus 241 d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~ 311 (513)
. ..|.|||=...+++..+. ...+|.++.+.++. |++. ..+.|+||... ..+.++.+.... ..+.+++
T Consensus 68 ~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 68 SRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred CCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 2 479999966677777776 67899999998763 4444 46789999987 445555554322 2333433
Q ss_pred eeCCCeEEE--EeCCCcEEEEecCCCee---eEEecCCCCeeEEEeecCCe-EEEEeCCCC-EEEEecCCCCeeEEeecC
Q 010296 312 CLRKERVLT--VGRDRSMQLWKVPEESR---LVFRAPASSLECCCFISNDE-FLSGSDDGS-IELWSLLRKKPVYIVKNA 384 (513)
Q Consensus 312 ~~~~~~~~~--~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~-i~iwd~~~~~~~~~~~~~ 384 (513)
-..+..+++ +-.-|.|+|-|+..... .....|.+.|.|++.+.+|. +++++..|+ |||||..++..+..+...
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 333334443 33569999999977655 68899999999999999996 778998887 799999999999998754
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.. ...|.+++|||+..+||++|..|+|.||.+...
T Consensus 224 ~d-----------------------------------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 224 VD-----------------------------------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred Cc-----------------------------------hheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 32 234999999999999999999999999999764
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=144.07 Aligned_cols=160 Identities=18% Similarity=0.306 Sum_probs=130.9
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-cCcCCCeEEEEEec--CCCeEEEEeCCCcEEEEeC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF-PGHRGPVSCLTFRQ--GTSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 291 (513)
.+.+|.+-|.|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|.+.|.++.|-| +.+.+++|..|..|+++|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 56899999999999999999999999999999999888877666 46999999999988 4567889999999999999
Q ss_pred CC----------CceeEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee-----------EEecCCCCee
Q 010296 292 ED----------RAYISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL-----------VFRAPASSLE 348 (513)
Q Consensus 292 ~~----------~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~v~ 348 (513)
.. ......+..|...|..++..|++ .|.+++.||+|+-+|++..... .+...--...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 74 12344556788899999998876 6779999999999999874321 1111223566
Q ss_pred EEEeecCC--eEEEEeCCCCEEEEecCC
Q 010296 349 CCCFISND--EFLSGSDDGSIELWSLLR 374 (513)
Q Consensus 349 ~~~~~~~~--~~~~~~~dg~i~iwd~~~ 374 (513)
|+.++|.. .|++|+.+-..++||.+.
T Consensus 205 ~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeecCCCCceEEecCCCchhhhhhhhh
Confidence 88888876 488999999999999643
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.2e-15 Score=147.31 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=140.3
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCC---ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKD---GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
.+.+..|...|.+.+|+|+|++|+.++.+ ..|++||+.++...... ...+| ...++|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~w 255 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAF 255 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeE
Confidence 45567788899999999999999987643 47999999877532211 11222 346899
Q ss_pred cCCCCEEEEEe-CCCcEEEE--eCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCC-ceeEEeecc
Q 010296 229 SSDGRYLASGG-LDRHIHLW--DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDR-AYISTLFGH 303 (513)
Q Consensus 229 s~~~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~ 303 (513)
+|+|+.|++++ .+|.+.|| |+.++.. ..+..+...+....|+|+|+.|+.++ .+|...||++... .....+ .+
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 99999888765 57765554 6666554 45556777788999999999877554 5788888876532 222223 33
Q ss_pred cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec--CCCCeeEE
Q 010296 304 QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL--LRKKPVYI 380 (513)
Q Consensus 304 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~--~~~~~~~~ 380 (513)
.. ....|+|++..++......+.+||+.++........ .....+.|+|+|. ++.++.++.+.+|.+ .++..+..
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 33 457899998655333335577799988765543322 2345678999996 667778888888875 35666666
Q ss_pred ee
Q 010296 381 VK 382 (513)
Q Consensus 381 ~~ 382 (513)
+.
T Consensus 411 l~ 412 (429)
T PRK01742 411 LP 412 (429)
T ss_pred cc
Confidence 64
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2e-14 Score=122.14 Aligned_cols=235 Identities=18% Similarity=0.241 Sum_probs=160.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCC------CcEEEEeCCCCc
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFD------RTVKIWNAEDRA 295 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~iwd~~~~~ 295 (513)
..+++|+.|..-+++|..+| .+||+.+--+.......+.+.+.-+.+.--.++|+ +|+.. ..|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 55699999999999888666 89999875433222222222222222222334555 34332 479999977777
Q ss_pred eeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe-eeE-E--ecCCCCeeEEEeecCCeEE--EEeCCCCEEE
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES-RLV-F--RAPASSLECCCFISNDEFL--SGSDDGSIEL 369 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~-~--~~~~~~v~~~~~~~~~~~~--~~~~dg~i~i 369 (513)
++..+. ...+|.++.+.++- +++-..+.|++|...... .+. + ......+.+++-..+..++ =|-.-|.|+|
T Consensus 87 ~i~el~-f~~~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi 163 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQI 163 (346)
T ss_pred EEEEEE-eccceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEE
Confidence 777776 78889999987653 333446789999987443 221 1 2222233333333333333 3556799999
Q ss_pred EecCCCCee--EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc-E
Q 010296 370 WSLLRKKPV--YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS-V 446 (513)
Q Consensus 370 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-v 446 (513)
-|+...+.- ..+ ..|.+.|.|++.+-+|.++||+|..|+ |
T Consensus 164 ~dL~~~~~~~p~~I-------------------------------------~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 164 VDLASTKPNAPSII-------------------------------------NAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred EEhhhcCcCCceEE-------------------------------------EcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 998776552 222 455666999999999999999999997 7
Q ss_pred EEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 447 RLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 447 ~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
||||..++ .+++.+..-.....|.+++|||++.+|+++ ++.|+|.|+.+...
T Consensus 207 RIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 207 RIFDTEDG-TLLQELRRGVDRADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEcCCC-cEeeeeecCCchheEEEEEeCCCccEEEEE-cCCCeEEEEEeecC
Confidence 99999998 455555544456789999999999999999 99999999976653
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.7e-14 Score=135.18 Aligned_cols=233 Identities=10% Similarity=0.017 Sum_probs=152.3
Q ss_pred ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCcceeee
Q 010296 181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL---DRHIHLWDTRIQEHIQA 257 (513)
Q Consensus 181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~ 257 (513)
..|.+||........ +..+...+.+.+|||+|+.|+..+. ...|++|++.+++....
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l 238 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 238 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc
Confidence 368888887654322 1345567999999999999887542 45799999988764332
Q ss_pred ccCcCCCeEEEEEecCCCeEEEE-eCCC--cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEeC-CC--cEEEE
Q 010296 258 FPGHRGPVSCLTFRQGTSELFSG-SFDR--TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVGR-DR--SMQLW 330 (513)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~iw 330 (513)
....+.+..+.|+|+|+.|+.. +.+| .|++||+.++.... +..+...+....|+|++. ++.++. .+ .|+++
T Consensus 239 -~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 239 -ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred -cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 2223345568999999988754 4444 59999998876544 443455678899999986 444443 34 45555
Q ss_pred ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CC--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296 331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DD--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS 406 (513)
Q Consensus 331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 406 (513)
++.++....+...........|+|+|. ++..+ .+ ..|.+||+.++... .+....
T Consensus 317 d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~--------------------- 374 (429)
T PRK03629 317 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF--------------------- 374 (429)
T ss_pred ECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC---------------------
Confidence 666665544444444556788999986 44433 33 35788898877643 222110
Q ss_pred CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc---EEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296 407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS---VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS 478 (513)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~---v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 478 (513)
......|+|||++|+.++.++. ++++++... ....+.. +.+.+...+|+|-
T Consensus 375 -----------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~--~~~~l~~--~~~~~~~p~Wsp~ 428 (429)
T PRK03629 375 -----------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPA--TDGQVKFPAWSPY 428 (429)
T ss_pred -----------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC--CeEECcc--CCCCcCCcccCCC
Confidence 0335679999999999887764 667777443 2233332 5677888999873
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=2e-14 Score=142.53 Aligned_cols=251 Identities=15% Similarity=0.251 Sum_probs=174.1
Q ss_pred CCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCc-------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcE
Q 010296 215 RATKQSKHILALAVSSDG-RYLASGGLDRHIHLWDTRIQ-------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTV 286 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 286 (513)
.+..|...|..++.++.. .+|++|+.||+|++|++... +...++......+.++.+.+.+..+|.++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 456678888888888755 89999999999999997532 2233444456789999999999999999999999
Q ss_pred EEEeCCCCc-------eeEEeec-ccCCeEEEE-eeC--CC-eEEEEeCCCcEEEEecCCCeee---EEecCCCCeeEEE
Q 010296 287 KIWNAEDRA-------YISTLFG-HQSEVLTID-CLR--KE-RVLTVGRDRSMQLWKVPEESRL---VFRAPASSLECCC 351 (513)
Q Consensus 287 ~iwd~~~~~-------~~~~~~~-~~~~v~~~~-~~~--~~-~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~ 351 (513)
.+.++.... +...... ..+.+.++. +.. .. .++.+..-+.|..||++..... ......+.|++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 999987621 1111111 223344433 322 23 4567778899999999876543 4445567899999
Q ss_pred eecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE
Q 010296 352 FISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV 430 (513)
Q Consensus 352 ~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 430 (513)
.+|.+. +++|+..|.+.+||++-+.++..+...+ ..+|..++.
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~------------------------------------~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA------------------------------------RAPIRHVWL 1246 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecCceeecccCcc------------------------------------cCCcceEEe
Confidence 999886 8899999999999999999888876433 234777776
Q ss_pred ecCC---CEEEEe-c-CCCcEEEEEeCCCCcceeeeeec-----------------CcccEEEEEEeecCCCEEEEEecC
Q 010296 431 CGGS---DLAASG-A-GNGSVRLWAIESETKDIQPLYNL-----------------PLVGFVNSLAFAKSGQFLIAGVGQ 488 (513)
Q Consensus 431 s~~~---~~l~~g-~-~dg~v~vwd~~~~~~~~~~~~~~-----------------~~~~~v~~v~~sp~~~~l~~~~~~ 488 (513)
+|-. ...+++ + ..+-|.+|++.++... ..+... ++.-......+..-+.++++| |.
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg-gs 1324 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG-GS 1324 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec-CC
Confidence 6633 344444 3 5788999999887322 222211 111122333444455677777 89
Q ss_pred CCcccccccCCCccc
Q 010296 489 EPRLGRWGHLPAARN 503 (513)
Q Consensus 489 dg~v~~W~~~~~~~~ 503 (513)
|+.|+.||.......
T Consensus 1325 d~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccceeeccCCCcccc
Confidence 999999998776544
No 219
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=7.4e-14 Score=127.64 Aligned_cols=272 Identities=11% Similarity=0.131 Sum_probs=173.2
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
..+++..+++++|+++|.+. +..++|++..++..+.+. ....++++.|+|-+.+|.+-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe---------------------ccceeeeeeecccccccccc
Confidence 34477889999999877665 578999999888644332 12268999999999998762
Q ss_pred e-----C-----CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 239 G-----L-----DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 239 ~-----~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
- . ...+.+|++.++.....+......-++..|+++..+.+ --..+.+++|++...+.+..- -|...|.
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~k-l~~~~i~ 169 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHK-LSVSGIT 169 (566)
T ss_pred cccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeee-eecccee
Confidence 1 1 24578999998666555544333336888888765433 222356777777653322111 1233334
Q ss_pred EEEeeCC----------------------------------------------------C--eEEEEe--CC--------
Q 010296 309 TIDCLRK----------------------------------------------------E--RVLTVG--RD-------- 324 (513)
Q Consensus 309 ~~~~~~~----------------------------------------------------~--~~~~~~--~d-------- 324 (513)
.+.++|. + .|+.++ -|
T Consensus 170 ~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYG 249 (566)
T KOG2315|consen 170 MLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYG 249 (566)
T ss_pred eEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccc
Confidence 4444332 2 121111 11
Q ss_pred -CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe---EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCc
Q 010296 325 -RSMQLWKVPEESRLVFRAPASSLECCCFISNDE---FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGK 400 (513)
Q Consensus 325 -~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
.+++++++............++|.++.|++.++ ++.|-.-..+.|||++ +.++..+..
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----------------- 311 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----------------- 311 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-----------------
Confidence 234444444333334444567888888988885 3456677788888864 455554432
Q ss_pred cccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296 401 ISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK 477 (513)
Q Consensus 401 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp 477 (513)
++-+++-|+|.|++|+.++-+ |.|.|||+.+. +.+..+.. ..-+-+.|+|
T Consensus 312 ----------------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a----~~tt~~eW~P 364 (566)
T KOG2315|consen 312 ----------------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKA----ANTTVFEWSP 364 (566)
T ss_pred ----------------------CCccceEECCCCCEEEEeecCCCCCceEEEeccch-hhcccccc----CCceEEEEcC
Confidence 236789999999999887744 89999999885 33333322 2245579999
Q ss_pred CCCEEEEEecC-----CCcccccccCC
Q 010296 478 SGQFLIAGVGQ-----EPRLGRWGHLP 499 (513)
Q Consensus 478 ~~~~l~~~~~~-----dg~v~~W~~~~ 499 (513)
||+++++++.. |..++||+...
T Consensus 365 dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999999666 78899997643
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1.1e-13 Score=118.21 Aligned_cols=268 Identities=14% Similarity=0.210 Sum_probs=182.9
Q ss_pred CCCeEEEEECCCCCeEEE-EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-
Q 010296 159 RQSVTAVALSEDDSKGFS-ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA- 236 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~- 236 (513)
-+.|..|.|..+.-++++ ...++.|.+|++...+-...+ .....++.++.|||+|+.++
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-------------------deg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-------------------DEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-------------------ccCCCcceeeeECCCcceEee
Confidence 467888999998887775 567889999999876644433 34466799999999996554
Q ss_pred EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC----------------------------------
Q 010296 237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---------------------------------- 282 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------------------------- 282 (513)
+...+-.|.||.+.+.+.... +-....+..++|+|+|++.+.++.
T Consensus 109 tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs 187 (447)
T KOG4497|consen 109 TSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS 187 (447)
T ss_pred eecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence 566688999999988765433 223445688999999988776653
Q ss_pred --CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee---------------------
Q 010296 283 --DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL--------------------- 338 (513)
Q Consensus 283 --dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~--------------------- 338 (513)
+..+.+||---.-.+..+ ...-.+..+.|+|.++|+ +|+.|+.+++.+--+-+..
T Consensus 188 Pdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~ 266 (447)
T KOG4497|consen 188 PDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET 266 (447)
T ss_pred CCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence 123344442211111111 123468889999988766 7788998887542111000
Q ss_pred -----------E-----------------------------------EecCCCCeeEEEeecCCeEEEEeCC---CCEEE
Q 010296 339 -----------V-----------------------------------FRAPASSLECCCFISNDEFLSGSDD---GSIEL 369 (513)
Q Consensus 339 -----------~-----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~d---g~i~i 369 (513)
. +..+..++..++|+++..+++.-.| ..+-+
T Consensus 267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL 346 (447)
T ss_pred cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence 0 0011234566889999887755544 46889
Q ss_pred EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296 370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449 (513)
Q Consensus 370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw 449 (513)
||++..+....+...++ |....|.|....|+.+.....+++|
T Consensus 347 Wdlq~l~l~avLiQk~p--------------------------------------iraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 347 WDLQNLKLHAVLIQKHP--------------------------------------IRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred Eechhhhhhhhhhhccc--------------------------------------eeEEEeCCCCceEEEEcCCceEEEE
Confidence 99988776665554444 9999999999888888777789999
Q ss_pred EeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC
Q 010296 450 AIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP 490 (513)
Q Consensus 450 d~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg 490 (513)
..... .........-.|..+.|.-+|.+|+.. +.|.
T Consensus 389 ~psg~----~~V~vP~~GF~i~~l~W~~~g~~i~l~-~kDa 424 (447)
T KOG4497|consen 389 APSGP----RVVGVPKKGFNIQKLQWLQPGEFIVLC-GKDA 424 (447)
T ss_pred cCCCc----eEEecCCCCceeeeEEecCCCcEEEEE-cCCc
Confidence 87653 222222234569999999999999988 7764
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.1e-13 Score=134.24 Aligned_cols=232 Identities=9% Similarity=-0.015 Sum_probs=152.8
Q ss_pred ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCcceeee
Q 010296 181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL---DRHIHLWDTRIQEHIQA 257 (513)
Q Consensus 181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~ 257 (513)
..|.+||........ +..|...+.+.+|+|+|+.|+..+. +..|++|++.+++.. .
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~ 240 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-L 240 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-E
Confidence 478888876543322 2456778999999999999888764 468999999888653 3
Q ss_pred ccCcCCCeEEEEEecCCCeEE-EEeCCCc--EEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CC--CcEEEE
Q 010296 258 FPGHRGPVSCLTFRQGTSELF-SGSFDRT--VKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RD--RSMQLW 330 (513)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d--~~i~iw 330 (513)
+..+.+.+.+..|+|+|+.|+ +.+.++. |++||+.++.. ..+..+........|+|++. ++.++ .. ..|++|
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 444666778899999999876 5555554 78889987765 44555666677889999985 44444 23 368888
Q ss_pred ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC-C--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296 331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGSD-D--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS 406 (513)
Q Consensus 331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 406 (513)
++.++....+......+....|+|+|. ++..+. . ..|.+|++.++.. ..+....
T Consensus 320 d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~--------------------- 377 (435)
T PRK05137 320 NADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF--------------------- 377 (435)
T ss_pred ECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC---------------------
Confidence 887765554444445566788999996 444333 2 3577788755432 2221110
Q ss_pred CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC------CcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296 407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN------GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS 478 (513)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 478 (513)
.+..+.|+|+|++|+..+.+ ..|+++++..+. ...+. ..+.+...+|+|-
T Consensus 378 -----------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~--~~~l~---~~~~~~~p~Wsp~ 433 (435)
T PRK05137 378 -----------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN--EREVP---TPGDASDPAWSPL 433 (435)
T ss_pred -----------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc--eEEcc---CCCCccCcccCCC
Confidence 15678899999988765532 257777776542 22222 2344667778763
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=9.1e-13 Score=123.37 Aligned_cols=247 Identities=10% Similarity=0.160 Sum_probs=166.5
Q ss_pred ccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCc--c--eeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeC
Q 010296 221 KHILALAVSSDGRYLASGGL----DRHIHLWDTRIQ--E--HIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNA 291 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 291 (513)
.....|+++|++++|++... .+.|..|.+... . .+............++++|++++|+++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34667899999999999876 468999987653 2 3333433445567899999999998876 5899999999
Q ss_pred CC-CceeEE---ee----------cccCCeEEEEeeCCCeEE-EEe-CCCcEEEEecCCCe--ee----EEecCCCCeeE
Q 010296 292 ED-RAYIST---LF----------GHQSEVLTIDCLRKERVL-TVG-RDRSMQLWKVPEES--RL----VFRAPASSLEC 349 (513)
Q Consensus 292 ~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~--~~----~~~~~~~~v~~ 349 (513)
.. +..... +. .......++.++|+++++ +.. ....|.+|++.... .. ...........
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 87 333222 11 123456789999998655 433 35689999997654 21 23455677889
Q ss_pred EEeecCCe--EEEEeCCCCEEEEecC--CCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcc
Q 010296 350 CCFISNDE--FLSGSDDGSIELWSLL--RKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYS 423 (513)
Q Consensus 350 ~~~~~~~~--~~~~~~dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 423 (513)
+.|+|++. +++.-.++.|.+|++. ++. .+..+...... .....
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-------------------------------~~~~~ 245 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-------------------------------FTGEN 245 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-------------------------------SCSSS
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-------------------------------ccccC
Confidence 99999986 4577778999999988 332 22222211000 01112
Q ss_pred eEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeeecCc-ccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 424 WVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 424 ~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
....|+++|+|++|+++. ..+.|.+|++......+..+...+. ....+.++|+|+|++|+++...++.|.+|++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 388999999999988765 5678999999544345555554443 33478999999999999998888999999874
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=3.5e-15 Score=135.21 Aligned_cols=156 Identities=22% Similarity=0.315 Sum_probs=122.9
Q ss_pred CCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCcccc----ccCCChhhhc-----cCCCCCCCCCCCCCcccEEEEEE
Q 010296 159 RQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVK----YLWPSEEVLK-----SHGAKDPQGRATKQSKHILALAV 228 (513)
Q Consensus 159 ~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~ 228 (513)
+..|+|+.|-|.+. .++.+-.+|.+.+||........ .+......+. ......|......-...|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999655 44566789999999863211110 0111111111 11112455555555678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 229 SSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 229 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
+|||++||+.+.||.++|+|..+.+++..++..-+...|++|+|||++|++|+.|-.|.||.+..++.+..-.+|...|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred EEEeeC
Q 010296 309 TIDCLR 314 (513)
Q Consensus 309 ~~~~~~ 314 (513)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999986
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=3.4e-14 Score=121.90 Aligned_cols=271 Identities=14% Similarity=0.219 Sum_probs=177.4
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC--E
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR--Y 234 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~ 234 (513)
-..-|.+|.|...|.+||||..+|.|.+|.-..... ...+. ....++....--.....-...|..+.|.++++ .
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~---t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQ---TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeee---eeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 356799999999999999999999999997543322 10000 00111110000000112245688999998654 5
Q ss_pred EEEEeCCCcEEEEeCCCccee-----------------------------------eec-cCcCCCeEEEEEecCCCeEE
Q 010296 235 LASGGLDRHIHLWDTRIQEHI-----------------------------------QAF-PGHRGPVSCLTFRQGTSELF 278 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~l~ 278 (513)
++..+.|.+|++|.+...... +.+ .+|.-.|+++.++.|...++
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 777778999999986532110 011 25788899999999988888
Q ss_pred EEeCCCcEEEEeCCCCce---eEEeecc-----cCCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeee-----EE---
Q 010296 279 SGSFDRTVKIWNAEDRAY---ISTLFGH-----QSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRL-----VF--- 340 (513)
Q Consensus 279 ~~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~-----~~--- 340 (513)
++. |=.|.+|++.-... +.-++++ ..-|++..|+|. +.|+..++.|+|++.|++..... .+
T Consensus 181 SAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 774 67899999864322 2222222 235788889994 56778889999999999843221 11
Q ss_pred ---------ecCCCCeeEEEeecCCeEEEEeCCCCEEEEec-CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296 341 ---------RAPASSLECCCFISNDEFLSGSDDGSIELWSL-LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN 410 (513)
Q Consensus 341 ---------~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 410 (513)
..-...|..+.|++.|+++..-.--+|++||+ ...+|+.+++.+......+..+-.++..+
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If--------- 330 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF--------- 330 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh---------
Confidence 12235677899999999877777789999999 55677777765443322222211111111
Q ss_pred CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.-..++|+.++.+++||+..+.+++|++..+
T Consensus 331 -------------dKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 331 -------------DKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred -------------heeEEEEcCCcceEecccccceEEEecCCCC
Confidence 0456889999999999999999999996654
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.1e-13 Score=133.88 Aligned_cols=232 Identities=14% Similarity=0.068 Sum_probs=150.6
Q ss_pred ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeee
Q 010296 181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQA 257 (513)
Q Consensus 181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~ 257 (513)
..|.+||....... . +..+...+.+.+|+|+|+.|+..+.. ..|++|++.+++...
T Consensus 184 ~~l~i~D~~g~~~~-~-------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ-T-------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce-E-------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46889998654322 1 23456678999999999999987743 469999998876543
Q ss_pred ccCcCCCeEEEEEecCCCeEE-EEeCCC--cEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCc--EEEE
Q 010296 258 FPGHRGPVSCLTFRQGTSELF-SGSFDR--TVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRS--MQLW 330 (513)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~--i~iw 330 (513)
+..+.+...++.|+|+|+.|+ +.+.+| .|++||+.+++.. .+..+........|+|+++ ++.++ ..+. |+++
T Consensus 243 l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 243 VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 333444556789999999876 445555 5999999887643 4444555567789999986 44444 3444 7777
Q ss_pred ecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeC-CC--CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296 331 KVPEESRLVFRAPASSLECCCFISNDE-FLSGSD-DG--SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS 406 (513)
Q Consensus 331 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 406 (513)
++.++....+..........+|+|+|. ++..+. ++ .|.+|++.+++.. .+....
T Consensus 322 dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~--------------------- 379 (433)
T PRK04922 322 AASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS--------------------- 379 (433)
T ss_pred ECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---------------------
Confidence 776665443333333445689999996 443332 22 5899999877654 222110
Q ss_pred CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296 407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK 477 (513)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp 477 (513)
......|+|+|++|+..+.+ +.|.++++... ....+.. +.+.+...+|+|
T Consensus 380 -----------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~--~~g~~~~p~wsp 432 (433)
T PRK04922 380 -----------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVS--ADGEVREPAWSP 432 (433)
T ss_pred -----------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEccc--CCCCCCCCccCC
Confidence 13456899999988776643 35777777543 2233322 345677778876
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=9.6e-15 Score=130.87 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=185.3
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEecC--CCeEEEEeCCCcEEEEeC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQG--TSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~ 291 (513)
.+..|.+.|..|.|...|..|++|+.|..|.+||+..+.....+. +|...|....|-|. ...+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 357899999999999999999999999999999999988876664 59889988889884 467999999999998876
Q ss_pred CCCce---eEEeecccCCeEEEEeeCCC--eEEEEeCCCcEEEEecCCCeee----EEecCCC---CeeEEEeecCC--e
Q 010296 292 EDRAY---ISTLFGHQSEVLTIDCLRKE--RVLTVGRDRSMQLWKVPEESRL----VFRAPAS---SLECCCFISND--E 357 (513)
Q Consensus 292 ~~~~~---~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~---~v~~~~~~~~~--~ 357 (513)
..... ...+..|.++|..++.-|+. .|++++.|+.+.-+|++..... ....... ....++..|.. .
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 54332 34566799999999998865 6889999999999999876443 2222223 46677888765 4
Q ss_pred EEEEeCCCCEEEEecCCCCe------eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296 358 FLSGSDDGSIELWSLLRKKP------VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC 431 (513)
Q Consensus 358 ~~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 431 (513)
|++|+.|..+++||.+.-.. +..+...|-. ......|++++|+
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-------------------------------~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-------------------------------EDDPVNITGLVYS 345 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCcccc-------------------------------ccCcccceeEEec
Confidence 88999999999999875321 1112111110 1222339999999
Q ss_pred cCCCEEEEecCCCcEEEEEeCCCCc-----------ceee-eeecCcccEEEEEEee-cCCCEEEEEecCCCcccccccC
Q 010296 432 GGSDLAASGAGNGSVRLWAIESETK-----------DIQP-LYNLPLVGFVNSLAFA-KSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 432 ~~~~~l~~g~~dg~v~vwd~~~~~~-----------~~~~-~~~~~~~~~v~~v~~s-p~~~~l~~~~~~dg~v~~W~~~ 498 (513)
.++.-|.++-.|-.|+++.-.-+.. ..+. ++.......|..|-|- |...|+++| ++=|.|.||+..
T Consensus 346 h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG-SDCGhIFiW~K~ 424 (559)
T KOG1334|consen 346 HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG-SDCGHIFIWDKK 424 (559)
T ss_pred CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEec-CccceEEEEecc
Confidence 8877777777777899995432211 1111 2222224457788764 888999888 888999999876
Q ss_pred CC
Q 010296 499 PA 500 (513)
Q Consensus 499 ~~ 500 (513)
.+
T Consensus 425 t~ 426 (559)
T KOG1334|consen 425 TG 426 (559)
T ss_pred hh
Confidence 54
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.4e-13 Score=113.98 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=115.5
Q ss_pred CCCeEEEEECCCC-CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 159 RQSVTAVALSEDD-SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 159 ~~~V~~~~~s~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
...|+|++|-|.+ +-|+.|+. +-|.||............. .............+| .+|++|.|.+||..|++
T Consensus 140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~-----~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~t 212 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR-----MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVT 212 (445)
T ss_pred hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc-----cccccchhheeCCCC-ceeeEEEEcCCCCEEee
Confidence 5679999999964 55667776 5589998764322211000 000001111123345 78999999999999999
Q ss_pred EeC-CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296 238 GGL-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE 316 (513)
Q Consensus 238 ~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 316 (513)
++. +..|+|||..++..+.......+.++-+.|+|++.+|++++-|+..++|+....-.........+.|...+|+|.|
T Consensus 213 AS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcG 292 (445)
T KOG2139|consen 213 ASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCG 292 (445)
T ss_pred cccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCC
Confidence 885 5789999999998776665567789999999999999999999999999765443333333345689999999999
Q ss_pred eEEEEeCCCcEEEEec
Q 010296 317 RVLTVGRDRSMQLWKV 332 (513)
Q Consensus 317 ~~~~~~~d~~i~iwd~ 332 (513)
+++.-...+.-.+|.+
T Consensus 293 sfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 293 SFLLFACSGSPRLYSL 308 (445)
T ss_pred CEEEEEEcCCceEEEE
Confidence 6653333344444443
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.2e-13 Score=119.10 Aligned_cols=266 Identities=12% Similarity=0.139 Sum_probs=186.4
Q ss_pred ccCCCeEEEEECCCCC--eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296 157 KHRQSVTAVALSEDDS--KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 234 (513)
.-...|+.++|.-+++ .|..++.+..+..+.+........++. .........+|..++.. ...
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~-------------~~~~~l~~~~I~gl~~~--dg~ 117 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD-------------AKTVSLGTKSIKGLKLA--DGT 117 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccc-------------ccccccccccccchhhc--CCE
Confidence 3456788888876554 444555677777777776655443211 01123445667777665 346
Q ss_pred EEEEeCCCcEEEEeCCCcc----eeeeccCcCCCeEEEEEecCCCeEE-EEeCC--CcEEEEeCCCCceeEEeecc----
Q 010296 235 LASGGLDRHIHLWDTRIQE----HIQAFPGHRGPVSCLTFRQGTSELF-SGSFD--RTVKIWNAEDRAYISTLFGH---- 303 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~---- 303 (513)
|++|-.+|.+.+|....+. .+..+..+ .++..|.-++...+++ +|+.. ..+.|||+.+.+.+..-+.-
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 7788889999999987443 22233322 4566666666655554 58888 88999999988666554322
Q ss_pred -----cCCeEEEEeeCC---CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296 304 -----QSEVLTIDCLRK---ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372 (513)
Q Consensus 304 -----~~~v~~~~~~~~---~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~ 372 (513)
+-.++.+.|.++ ..|++++.-+.|++||.+.+... .+.....+++++...|.+. +++|..-|.+..||+
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~ 276 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDL 276 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecc
Confidence 123567778765 47889999999999999876543 5666678999999999987 669999999999999
Q ss_pred CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
++++.+.... .+..+.|.++..+|.+++|++++-|..|||+|+.
T Consensus 277 r~~kl~g~~~------------------------------------kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 277 RGGKLLGCGL------------------------------------KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cCceeecccc------------------------------------CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 9998776622 2222339999999999999999999999999999
Q ss_pred CCCcceeeeeecCcccEEEEEEeecC
Q 010296 453 SETKDIQPLYNLPLVGFVNSLAFAKS 478 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~v~~sp~ 478 (513)
+. +++...+ ....++++-+.++
T Consensus 321 tr-kll~kvY---vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 321 TR-KLLHKVY---VKSRLTFILLRDD 342 (412)
T ss_pred cc-hhhhhhh---hhccccEEEecCC
Confidence 85 3333333 3566777777655
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.5e-13 Score=129.21 Aligned_cols=216 Identities=14% Similarity=0.083 Sum_probs=136.2
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEE--eC
Q 010296 218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIW--NA 291 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw--d~ 291 (513)
.+...+.+.+|+|+|+.|+..+.. ..|.+||+.+++... +....+.+.+..|+|+|+.|+ +.+.+|...|| |+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 456678999999999999887643 459999999887543 333345567899999999886 56677775555 45
Q ss_pred CCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEEEec--CCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCC-
Q 010296 292 EDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQLWKV--PEESRLVFRAPASSLECCCFISNDE-FLSGSDDG- 365 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg- 365 (513)
.++. ...+..+........|+|+|+ ++.++ ..+...+|.+ .++................|+|+|. ++..+.++
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 4444 445554555567788999985 44444 3455666654 4443332222233344678999996 44444333
Q ss_pred --CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296 366 --SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN 443 (513)
Q Consensus 366 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 443 (513)
.|.+||+.+++...... . .......|+|+|++|+.++.+
T Consensus 351 ~~~I~v~d~~~g~~~~lt~-~--------------------------------------~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 351 AFKLYVQDLATGQVTALTD-T--------------------------------------TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred cEEEEEEECCCCCeEEccC-C--------------------------------------CCccCceECCCCCEEEEEEec
Confidence 59999998876432211 0 013467899999988877654
Q ss_pred C-c--EEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296 444 G-S--VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS 478 (513)
Q Consensus 444 g-~--v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 478 (513)
+ . +.+.++.. .....+.. +.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~~g--~~~~~l~~--~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSSDG--RIKQRLSV--QGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEECCC--CceEEeec--CCCCCCCCccCCC
Confidence 3 3 44545532 22222322 4466777888874
No 230
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.59 E-value=1.2e-11 Score=112.50 Aligned_cols=264 Identities=13% Similarity=0.048 Sum_probs=166.1
Q ss_pred ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC----------CCcEEEEeCC
Q 010296 181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL----------DRHIHLWDTR 250 (513)
Q Consensus 181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------dg~i~vwd~~ 250 (513)
++|.+.|..+++.+..+. .+.. -..+ +||+++.|+++.. +..|.+||+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 899999999988877651 1111 1224 9999998887765 6899999999
Q ss_pred CcceeeeccCc-------CCCeEEEEEecCCCeEEEEe-C-CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEE
Q 010296 251 IQEHIQAFPGH-------RGPVSCLTFRQGTSELFSGS-F-DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV 321 (513)
Q Consensus 251 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 321 (513)
+.+.+..+... ......++++|+|++|++.. . +..|.++|+.+++.+..+.-. +. ..+-..+...+.+.
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~-~~vy~t~e~~~~~~ 163 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DC-YHIFPTANDTFFMH 163 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CC-cEEEEecCCccEEE
Confidence 99999887642 22334789999999999766 3 789999999999998877642 21 12222223333344
Q ss_pred eCCCcEEEEecCCCeee------EEecCCCCeeE-EEeec-CCeEEEEeCCCCEEEEecCCCCeeE-----EeecCCCcc
Q 010296 322 GRDRSMQLWKVPEESRL------VFRAPASSLEC-CCFIS-NDEFLSGSDDGSIELWSLLRKKPVY-----IVKNAHPLL 388 (513)
Q Consensus 322 ~~d~~i~iwd~~~~~~~------~~~~~~~~v~~-~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~ 388 (513)
+.||......+...... .+.....++.. -.+.+ +|..+-.+..|+|.+.|+....... .+......
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~- 242 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKA- 242 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccc-
Confidence 45555544333221111 11110000000 03344 6664444444999999975543222 21111000
Q ss_pred cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec----------CCCcEEEEEeCCCCcce
Q 010296 389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA----------GNGSVRLWAIESETKDI 458 (513)
Q Consensus 389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~----------~dg~v~vwd~~~~~~~~ 458 (513)
. .-....+.-++++|+++.|++.. ..+.|.++|..+.
T Consensus 243 --------------------~---------~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---- 289 (352)
T TIGR02658 243 --------------------D---------GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---- 289 (352)
T ss_pred --------------------c---------ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----
Confidence 0 01122245599999999888743 2247999999887
Q ss_pred eeeeecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCc
Q 010296 459 QPLYNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 459 ~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~ 501 (513)
+.+..++....+..++|+||++ +|+++...++.|.+.|.....
T Consensus 290 kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 290 KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 3344444566799999999999 888886688999999987664
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.8e-13 Score=128.28 Aligned_cols=205 Identities=17% Similarity=0.067 Sum_probs=135.5
Q ss_pred hhhhccCCCeEEEEECCCCCeEEEEe---CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 153 RVLLKHRQSVTAVALSEDDSKGFSAS---KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
+.+..+...+.+.+|||||+.|+..+ .+..|.+|++.+++..... .....+..++|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--------------------~~~~~~~~~~~S 251 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------SFPRHNGAPAFS 251 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--------------------CCCCCcCCeEEC
Confidence 44555677899999999999998654 2457999999887543211 112234568999
Q ss_pred CCCCEEEEE-eCCC--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCceeEEeecc
Q 010296 230 SDGRYLASG-GLDR--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD-R--TVKIWNAEDRAYISTLFGH 303 (513)
Q Consensus 230 ~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~ 303 (513)
|+|+.|+.. +.+| .|++||+.+++..... .+...+....|+|+|+.|+..+.. + .|+++++.++.. ..+...
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~ 329 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE 329 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence 999988865 3344 5899999888765443 344567889999999988766653 4 455557766644 333334
Q ss_pred cCCeEEEEeeCCCeEE-EEeCC---CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCC---EEEEecCCC
Q 010296 304 QSEVLTIDCLRKERVL-TVGRD---RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGS---IELWSLLRK 375 (513)
Q Consensus 304 ~~~v~~~~~~~~~~~~-~~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~---i~iwd~~~~ 375 (513)
........|+|+|..+ ..+.+ ..|.+||+.++....+... .......|+|+|. ++.++.++. +.++++. +
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G 407 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G 407 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-C
Confidence 4455678899998544 44432 4588899987765544432 2344678999996 556665554 6667763 4
Q ss_pred CeeEEe
Q 010296 376 KPVYIV 381 (513)
Q Consensus 376 ~~~~~~ 381 (513)
.....+
T Consensus 408 ~~~~~l 413 (429)
T PRK03629 408 RFKARL 413 (429)
T ss_pred CCeEEC
Confidence 444444
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=7.3e-13 Score=129.78 Aligned_cols=202 Identities=21% Similarity=0.330 Sum_probs=160.4
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
.-.+.|....+.-....++.++.+..+.+||...+.....+..... .......-+-++++.-+++
T Consensus 85 ~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er---------------~~l~~~~~~g~s~~~~~i~ 149 (967)
T KOG0974|consen 85 RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER---------------CTLYSSLIIGDSAEELYIA 149 (967)
T ss_pred hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce---------------EEEEeEEEEeccCcEEEEE
Confidence 3455566667777788899999999999999988776654411111 0111233344567777999
Q ss_pred EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE-EeecccCCeEEEEeeCC
Q 010296 237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS-TLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~ 315 (513)
+|+.-+.|.+|+....+.-..+.+|.+.|.++.|+-+|++++++|.|.++++|.+.+.+... +..+|+..|+.+.+.|.
T Consensus 150 ~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN 229 (967)
T ss_pred eccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence 99999999999987444444688999999999999999999999999999999999988766 66789999999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCeeeEEecCC-CCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296 316 ERVLTVGRDRSMQLWKVPEESRLVFRAPA-SSLECCCFISNDE-FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 316 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~ 374 (513)
++++++.|.++++|.........+..|. ..+..++..++.. .++++.|+.+++|++..
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999999977666555555554 4678888888775 67999999999999865
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=1.4e-12 Score=121.63 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=168.4
Q ss_pred CeE-EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296 172 SKG-FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR 250 (513)
Q Consensus 172 ~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 250 (513)
+++ ++-..++.|.|.|..+.+.+..+ ......-..+.|+|||+++++++.||.|.++|+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i-------------------~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARI-------------------PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEE-------------------E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEE-------------------cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC
Confidence 344 45567899999999998888765 1222223457899999999999999999999999
Q ss_pred CcceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEEeCCCCceeEEeecc-------cCCeEEEEeeCCCe-EEEE
Q 010296 251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIWNAEDRAYISTLFGH-------QSEVLTIDCLRKER-VLTV 321 (513)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~ 321 (513)
+++.+.+++.. ....+++++++|++++++. ..+.|.++|..+.+.+..+... ...+.++..++... +++.
T Consensus 67 ~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 67 TGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp SSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred cccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 99999998854 4568899999999988664 6899999999999988877532 33567777777654 5555
Q ss_pred eC-CCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-E-EEEeCCCCEEEEecCCCCeeEEeecCCCcccC-CCCcc
Q 010296 322 GR-DRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-F-LSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG-LKNFE 395 (513)
Q Consensus 322 ~~-d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~ 395 (513)
-. .+.|.+.|....... .............|.|+++ | ++......|-++|..+++.+..+......... ...+.
T Consensus 146 lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p 225 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP 225 (369)
T ss_dssp ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE
T ss_pred EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc
Confidence 44 588888887665433 3444556677889999986 3 34566779999999999887776543211000 00000
Q ss_pred cCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEe
Q 010296 396 QDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAF 475 (513)
Q Consensus 396 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~ 475 (513)
....++++.. ...+...++.-....+.+|+..+. +.++.+.. ..++ .-+.-
T Consensus 226 -----------------------hp~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~--~G~g-lFi~t 276 (369)
T PF02239_consen 226 -----------------------HPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPT--QGGG-LFIKT 276 (369)
T ss_dssp -----------------------ETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBT-SEEEEEE---SSSS---EE-
T ss_pred -----------------------CCCcceEEee--ccccceecccccCCccccchhhcC-eEEEEEEC--CCCc-ceeec
Confidence 0011112221 222333323223335667777766 33444433 2233 66788
Q ss_pred ecCCCEEEEE---ecCCCcccccccCCC
Q 010296 476 AKSGQFLIAG---VGQEPRLGRWGHLPA 500 (513)
Q Consensus 476 sp~~~~l~~~---~~~dg~v~~W~~~~~ 500 (513)
+|++++|.+. ..+...|.++|..+-
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCc
Confidence 9999999988 555689999988765
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.1e-12 Score=127.24 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=143.6
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER- 317 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~- 317 (513)
..|.+||... .....+..|...+.+.+|+|+|+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|+|.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 4788999754 444556668889999999999999887653 468999999887653 3445666778899999985
Q ss_pred EE-EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC--CEEEEecCCCCeeEEeecCCCcccC
Q 010296 318 VL-TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG--SIELWSLLRKKPVYIVKNAHPLLDG 390 (513)
Q Consensus 318 ~~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 390 (513)
++ +.+.++. |++||+.++....+..+........|+|+|. ++..+ .+| .|++|++.++........
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~------- 332 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG------- 332 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-------
Confidence 44 4445544 7788988877666555555566789999996 55443 333 577788766554332211
Q ss_pred CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcceeeeeecCcc
Q 010296 391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKDIQPLYNLPLV 467 (513)
Q Consensus 391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~ 467 (513)
...+....|+|+|++|+..+.+ ..|.+|++..+. ...+. ..
T Consensus 333 -------------------------------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~--~~~lt---~~ 376 (435)
T PRK05137 333 -------------------------------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG--ERILT---SG 376 (435)
T ss_pred -------------------------------CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc--eEecc---CC
Confidence 1115567899999999876543 368888875542 22222 22
Q ss_pred cEEEEEEeecCCCEEEEEecCCC-----cccccccCC
Q 010296 468 GFVNSLAFAKSGQFLIAGVGQEP-----RLGRWGHLP 499 (513)
Q Consensus 468 ~~v~~v~~sp~~~~l~~~~~~dg-----~v~~W~~~~ 499 (513)
..+..+.|+|||++|+..+...+ .|.+.+...
T Consensus 377 ~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 377 FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 34677899999999887744443 345555543
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6e-13 Score=121.92 Aligned_cols=253 Identities=16% Similarity=0.177 Sum_probs=172.9
Q ss_pred CCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 217 TKQSKHILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
..|....+.|..+|||+|+ |+|.+-..|++||+....+...-......|.-.-++.|-..++.-..|.+|-+.......
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4677788999999999985 567788999999997655432222223345555556555556666667777765532221
Q ss_pred eeEEeecccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296 296 YISTLFGHQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~ 372 (513)
.-.. .+..-..++++. ..-+++++....|+-+++..+..+ .+......++++.+++... |++|+.+|.|..||.
T Consensus 128 y~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 128 YRTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 1111 222334566654 446788888889999999988876 3444557889999988765 668888999999999
Q ss_pred CCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 373 LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
+....+.++........ .........|+++.|+.+|-.+++|+..|.|.|||++
T Consensus 205 R~ksrv~~l~~~~~v~s--------------------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNS--------------------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred hhhhhheeeecccccCC--------------------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 99887777654332100 0001122339999999999999999999999999999
Q ss_pred CCCcceeeeeecCcccEEEEEEeecCC--CEEEEEecCCCcccccccCCCcc
Q 010296 453 SETKDIQPLYNLPLVGFVNSLAFAKSG--QFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
+.... ........-+|..+.|.+.+ ..|++ .+...++||+-..+..
T Consensus 259 a~~pl--~~kdh~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 259 ASKPL--LVKDHGYELPIKKLDWQDTDQQNKVVS--MDKRILKIWDECTGKP 306 (703)
T ss_pred cCCce--eecccCCccceeeecccccCCCceEEe--cchHHhhhcccccCCc
Confidence 87322 22232346689999998763 34444 4667999999877654
No 236
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=4.3e-11 Score=104.53 Aligned_cols=276 Identities=12% Similarity=0.176 Sum_probs=188.3
Q ss_pred CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCC--cce
Q 010296 180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRI--QEH 254 (513)
Q Consensus 180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~--~~~ 254 (513)
+.-|.+|++.+....... .....+...++-|+|+|++++|.++..+ |.|..|.+.. |+.
T Consensus 15 s~gI~v~~ld~~~g~l~~----------------~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L 78 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL----------------LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL 78 (346)
T ss_pred CCceEEEEEeCcccccch----------------hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence 467999998844322211 0123456778999999999999988654 6777777654 443
Q ss_pred --eeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCC-Ccee--EEeecccCC----------eEEEEeeCCCeE
Q 010296 255 --IQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAED-RAYI--STLFGHQSE----------VLTIDCLRKERV 318 (513)
Q Consensus 255 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~ 318 (513)
+........+-+.+++++++++|+++.. -|.|.++-++. |... ..+..|.+. +.+..+.|++++
T Consensus 79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 2222223334488999999999987754 68899999865 3321 112224444 778889999966
Q ss_pred EEEeC--CCcEEEEecCCCeee----EEecCCCCeeEEEeecCCeEE--EEeCCCCEEEEecCCC-CeeEEeecCCCccc
Q 010296 319 LTVGR--DRSMQLWKVPEESRL----VFRAPASSLECCCFISNDEFL--SGSDDGSIELWSLLRK-KPVYIVKNAHPLLD 389 (513)
Q Consensus 319 ~~~~~--d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~ 389 (513)
+.+.. -..|.+|++..+... ...........+.|+|+++++ +.--+++|.+|..... ..+..++.......
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 64443 457999999866543 233567788899999999854 6777999999998874 33334433222110
Q ss_pred CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CCcEEEEEeCCCCcceeeeeecCccc
Q 010296 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NGSVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
. .....+...|.++|+|++|+++.. ...|.+|.+......+..+...+..+
T Consensus 239 d----------------------------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 239 D----------------------------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred c----------------------------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence 0 223345888999999999998853 34899999987755566555544444
Q ss_pred E-EEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 469 F-VNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 469 ~-v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
. .+...|+|.|++|+++.-+...|.++...+
T Consensus 291 ~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 291 QFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred cCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 3 789999999999999966667888886654
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=2.6e-13 Score=114.91 Aligned_cols=111 Identities=11% Similarity=0.282 Sum_probs=84.9
Q ss_pred CCCCeeEEEeecCCe-EE--EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296 343 PASSLECCCFISNDE-FL--SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS 419 (513)
Q Consensus 343 ~~~~v~~~~~~~~~~-~~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 419 (513)
...+|..++|+|+|. |+ .|..++.|.+||++ ++++..+..
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~------------------------------------ 100 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT------------------------------------ 100 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC------------------------------------
Confidence 345699999999985 44 45567899999996 556655532
Q ss_pred CCcceEEEEEEecCCCEEEEecC---CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC-----CCc
Q 010296 420 SAYSWVSSVTVCGGSDLAASGAG---NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ-----EPR 491 (513)
Q Consensus 420 ~~~~~i~~~~~s~~~~~l~~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~-----dg~ 491 (513)
..+..+.|+|+|++|++++. .|.|.+||+.+. ..+....|. .++.++|+|+|++|+++++. |..
T Consensus 101 ---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 101 ---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNG 172 (194)
T ss_pred ---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccccC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence 12788999999999999874 367999999866 334433344 47899999999999999664 788
Q ss_pred ccccccC
Q 010296 492 LGRWGHL 498 (513)
Q Consensus 492 v~~W~~~ 498 (513)
++||+..
T Consensus 173 ~~Iw~~~ 179 (194)
T PF08662_consen 173 FKIWSFQ 179 (194)
T ss_pred EEEEEec
Confidence 9999874
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=9.7e-13 Score=111.39 Aligned_cols=151 Identities=17% Similarity=0.290 Sum_probs=107.7
Q ss_pred EEEEECCCCCeEEEEeC----------CceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 163 TAVALSEDDSKGFSASK----------DGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 163 ~~~~~s~~~~~l~t~~~----------dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
..+.|+|.|.+|++-.. -+...||.+..... ...+ ......+|.+++|+|+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i------------------~l~~~~~I~~~~WsP~ 70 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI------------------ELKKEGPIHDVAWSPN 70 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee------------------eccCCCceEEEEECcC
Confidence 46889999998875432 13355555532221 1111 1223456999999999
Q ss_pred CCEEEEE--eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCC
Q 010296 232 GRYLASG--GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSE 306 (513)
Q Consensus 232 ~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~ 306 (513)
|+.||+. ...+.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||+++.+.+.... | ..
T Consensus 71 g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~ 145 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SD 145 (194)
T ss_pred CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-Cc
Confidence 9987654 356799999996 66666664 567889999999999998875 4679999999888887764 3 34
Q ss_pred eEEEEeeCCCeEE-EEe------CCCcEEEEecCCCe
Q 010296 307 VLTIDCLRKERVL-TVG------RDRSMQLWKVPEES 336 (513)
Q Consensus 307 v~~~~~~~~~~~~-~~~------~d~~i~iwd~~~~~ 336 (513)
+..++|+|+|+++ ++. .|+.++||+.....
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 7899999999665 443 37889999986543
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1e-12 Score=127.27 Aligned_cols=212 Identities=11% Similarity=0.066 Sum_probs=140.4
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER- 317 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~- 317 (513)
..|.+||.... ....+..+...+.+.+|+|+++.|+.++. ...|++|++.+++... +....+...++.|+|++.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 46899998644 44455567778999999999999887764 3469999998876533 333445556789999985
Q ss_pred EE-EEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCCC--EEEEecCCCCeeEEeecCCCcccC
Q 010296 318 VL-TVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDGS--IELWSLLRKKPVYIVKNAHPLLDG 390 (513)
Q Consensus 318 ~~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~ 390 (513)
++ +.+.++ .|++|++.++....+..+.......+|+|+|. ++..+ .+|. |+++++.+++........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g------ 335 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG------ 335 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC------
Confidence 43 444555 59999998877665555544556789999996 55444 3444 666666665533221100
Q ss_pred CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---cEEEEEeCCCCcceeeeeecCcc
Q 010296 391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---SVRLWAIESETKDIQPLYNLPLV 467 (513)
Q Consensus 391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~ 467 (513)
......+|||+|++|+..+.++ .|.+|++.++. ...+. +.
T Consensus 336 --------------------------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~--~~~Lt---~~ 378 (433)
T PRK04922 336 --------------------------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS--VRTLT---PG 378 (433)
T ss_pred --------------------------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC--eEECC---CC
Confidence 1144689999999988765433 69999997762 22332 22
Q ss_pred cEEEEEEeecCCCEEEEEecCCC--cccccccC
Q 010296 468 GFVNSLAFAKSGQFLIAGVGQEP--RLGRWGHL 498 (513)
Q Consensus 468 ~~v~~v~~sp~~~~l~~~~~~dg--~v~~W~~~ 498 (513)
.......|+|||++|+.++...+ .|.+|+..
T Consensus 379 ~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 379 SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 23456799999999887745444 45555554
No 240
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.55 E-value=5.1e-12 Score=114.42 Aligned_cols=292 Identities=13% Similarity=0.129 Sum_probs=189.0
Q ss_pred ccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc
Q 010296 143 VQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH 222 (513)
Q Consensus 143 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
+|.......-..+..-.-++..++|||.|.+|++....| |.+|.-.....+..+ ....
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~---------------------~~~~ 73 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF---------------------RHPD 73 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeee---------------------ecCC
Confidence 344444333344444667899999999999999887654 888988776644433 2335
Q ss_pred EEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCcceeeeccCcCC------------------------
Q 010296 223 ILALAVSSDGRYLASGGLDR---------------HIHLWDTRIQEHIQAFPGHRG------------------------ 263 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~~~~~------------------------ 263 (513)
|..+.|+|.+++|.+-+..+ .+.+||+.++..+..+.....
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s 153 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS 153 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence 89999999999999866433 499999998877665543222
Q ss_pred ---------------------CeEEEEEecCCC--eEEE-----EeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 264 ---------------------PVSCLTFRQGTS--ELFS-----GSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 264 ---------------------~v~~~~~~~~~~--~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
.|....|+|.++ .|+. .+..+++++|.+..+..+.+..-....-..+.|.+.
T Consensus 154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~ 233 (561)
T COG5354 154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL 233 (561)
T ss_pred EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence 344445555322 2221 234556666666655444333222333355677776
Q ss_pred CeEEEEe------------CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-E--EEEeCCCCEEEEecCCCCeeEE
Q 010296 316 ERVLTVG------------RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-F--LSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 316 ~~~~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~--~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
|..+.+- ...+++++++............++|...+|.|.+. | ++|-....+.++|++.. ....
T Consensus 234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred CceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe
Confidence 6432211 12567888887555555546678999999999874 4 46678899999998876 3333
Q ss_pred eecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEEeCCCCcc
Q 010296 381 VKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWAIESETKD 457 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd~~~~~~~ 457 (513)
+... .-..+.|||.++++++++-+ |.|.+|+.......
T Consensus 313 ~Pe~---------------------------------------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 313 FPEQ---------------------------------------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cCCc---------------------------------------ccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 3221 14567899999999987755 78999998876332
Q ss_pred eeeeeecCcccEEEEEEeecCCCEEEEEec-----CCCcccccccCCC
Q 010296 458 IQPLYNLPLVGFVNSLAFAKSGQFLIAGVG-----QEPRLGRWGHLPA 500 (513)
Q Consensus 458 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-----~dg~v~~W~~~~~ 500 (513)
+..+. ....+-+.|+|+++++.+... .|..+.||++...
T Consensus 354 ~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 354 AGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 22222 223455789999999887743 3568999987543
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.55 E-value=6.7e-13 Score=114.13 Aligned_cols=250 Identities=14% Similarity=0.214 Sum_probs=176.9
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
..++.+.||...|+....-|...-+++.+.|.+++||--.+... +|+.. ......+++++.++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---~wpsI--------------~~~mP~~~~~~~y~ 77 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---YWPSI--------------YHYMPSPCSAMEYV 77 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc---cCchh--------------hhhCCCCceEeeee
Confidence 45678899999999999999989999999999999996443221 22221 12345679999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC----CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296 230 SDGRYLASGGLDRHIHLWDTR----IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS 305 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 305 (513)
+....|++|-..|++.-+.+. ....++.+..|...|..+-|+-....+++.+.|..+.---.+.+..+..+. ...
T Consensus 78 ~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~ 156 (404)
T KOG1409|consen 78 SESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FET 156 (404)
T ss_pred ccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eec
Confidence 999999999999999988654 344566677899999999999888999999999877544444444332221 011
Q ss_pred CeEEEEeeCCCeEEEEeCCCcEEEEecCC---CeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296 306 EVLTIDCLRKERVLTVGRDRSMQLWKVPE---ESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 306 ~v~~~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
...++.+.-. ..+.+...|.|.+..+.. +....+.+|...+.+++|.+... +++|..|..+.+||+...+-+...
T Consensus 157 ~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 157 PASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred cCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence 1111111111 223455556665554432 23347788999999999999775 779999999999999776544333
Q ss_pred ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
. .+|...|..++.-+--+.|++++.||.|.+|+.+..
T Consensus 236 l------------------------------------~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 236 L------------------------------------QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred e------------------------------------ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 2 233334777777777778999999999999998653
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=1.7e-13 Score=124.39 Aligned_cols=171 Identities=13% Similarity=0.163 Sum_probs=127.9
Q ss_pred CCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEE
Q 010296 168 SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLASGGLDRHIHL 246 (513)
Q Consensus 168 s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~v 246 (513)
.|.+--|+.|-.-|.|.+.|....+ +..++.... .-....|+|+.|-|. ...++++-.+|.+++
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r--------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyl 246 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEER--------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYL 246 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhH-HHHhhhhcc--------------cccccceEEEEEEeCCCceEEEEEecCceEE
Confidence 3456678888888889888876522 222211111 112367999999994 446667778999999
Q ss_pred EeCCCc----------------------------ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 247 WDTRIQ----------------------------EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 247 wd~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
||..-. .++..+....+.|+.++|+|||++||+.+.||.++|+|..+.+++.
T Consensus 247 y~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 247 YDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred eeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 975310 1112222234578999999999999999999999999999988887
Q ss_pred EeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEee
Q 010296 299 TLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFI 353 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~ 353 (513)
.++.--+...|++|+|||+++ +++.|..|.||.+...+.+ .-.+|.+.|..++|.
T Consensus 327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 777777889999999999665 8999999999999888776 456788888888886
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.7e-12 Score=123.84 Aligned_cols=210 Identities=12% Similarity=0.123 Sum_probs=135.8
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER- 317 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~- 317 (513)
..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.. ..|++||+.+++... +....+.+.+..|+|++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467777864 44444555677889999999999998876643 459999999886543 333445667899999984
Q ss_pred EE-EEeCCCcEEEEe--cCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCCCEEEEec--CCCCeeEEeecCCCcccC
Q 010296 318 VL-TVGRDRSMQLWK--VPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDGSIELWSL--LRKKPVYIVKNAHPLLDG 390 (513)
Q Consensus 318 ~~-~~~~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~ 390 (513)
++ +.+.++...+|. +.++....+..+........|+|+|. ++..+ ..|...||.+ .++........ .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g----- 327 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-G----- 327 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-C-----
Confidence 44 456677655554 44444444444444556788999996 44333 4566666654 34332221110 0
Q ss_pred CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---cEEEEEeCCCCcceeeeeecCcc
Q 010296 391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---SVRLWAIESETKDIQPLYNLPLV 467 (513)
Q Consensus 391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~ 467 (513)
......+|||+|++|+..+.++ .|++|++.++. ...+.. .
T Consensus 328 --------------------------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~---~ 370 (427)
T PRK02889 328 --------------------------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ--VTALTD---T 370 (427)
T ss_pred --------------------------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC--eEEccC---C
Confidence 0134578999999998776554 69999998762 222321 2
Q ss_pred cEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 468 GFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 468 ~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.......|+|||++|+.++...|.-.+|-
T Consensus 371 ~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 371 TRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 23467899999999998865565544553
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=7e-13 Score=113.99 Aligned_cols=258 Identities=15% Similarity=0.239 Sum_probs=172.9
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-----eeeeccCcC------------CCeEEEEEecCCC--eEEEE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-----HIQAFPGHR------------GPVSCLTFRQGTS--ELFSG 280 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~ 280 (513)
..-|.++.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4558999999999999999999999999643222 223333342 4688899988664 57788
Q ss_pred eCCCcEEEEeCCCCcee-----------------------------------EE-eecccCCeEEEEeeCCCeEEEEeCC
Q 010296 281 SFDRTVKIWNAEDRAYI-----------------------------------ST-LFGHQSEVLTIDCLRKERVLTVGRD 324 (513)
Q Consensus 281 ~~dg~i~iwd~~~~~~~-----------------------------------~~-~~~~~~~v~~~~~~~~~~~~~~~~d 324 (513)
+.|.+|++|.+...... +. -..|.-.|+++.++.+...+..+.|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 89999999987532100 00 0247778999999999888878888
Q ss_pred CcEEEEecCCCee-e---EEecC-----CCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecC--CCcccCC
Q 010296 325 RSMQLWKVPEESR-L---VFRAP-----ASSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNA--HPLLDGL 391 (513)
Q Consensus 325 ~~i~iwd~~~~~~-~---~~~~~-----~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~ 391 (513)
=.|.+|++.-... . -...+ ..-|++..|+|.. .|+-.++.|+|++.|++.....-.-... .+....
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~- 263 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS- 263 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc-
Confidence 9999999853221 1 11222 1347778888865 4888899999999999864322111000 000000
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCc-----
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL----- 466 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~----- 466 (513)
+.+.+ ......|..+.|+++|+||++-..- +|+|||++...+++........
T Consensus 264 -----~rsff-----------------seiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 264 -----SRSFF-----------------SEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred -----chhhH-----------------HHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHH
Confidence 00000 1112338899999999999998765 8999999776566655443211
Q ss_pred -----ccE---EEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 467 -----VGF---VNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 467 -----~~~---v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
... -.-++|+-++.++++| +....+++++...+.+
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TG-sy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTG-SYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecc-cccceEEEecCCCCcc
Confidence 122 2357899999999999 8888999998665543
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=1.1e-10 Score=109.25 Aligned_cols=266 Identities=10% Similarity=0.156 Sum_probs=167.4
Q ss_pred CCCeEEEEECCCCCeEEEEeC----CceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296 159 RQSVTAVALSEDDSKGFSASK----DGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR 233 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~----dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 233 (513)
......|+++|++++|++... .+.|..|.+... ..+..+ . ...........++++|+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~-------~---------~~~~~g~~p~~i~~~~~g~ 99 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL-------N---------SVPSGGSSPCHIAVDPDGR 99 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE-------E---------EEEESSSCEEEEEECTTSS
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe-------e---------eeccCCCCcEEEEEecCCC
Confidence 455677899999999998876 578999998764 222111 0 0111234466799999999
Q ss_pred EEEEEeC-CCcEEEEeCCC-cceeee---c----------cCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCCCc--
Q 010296 234 YLASGGL-DRHIHLWDTRI-QEHIQA---F----------PGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAEDRA-- 295 (513)
Q Consensus 234 ~l~s~~~-dg~i~vwd~~~-~~~~~~---~----------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-- 295 (513)
+|+++.. +|.|.++++.. +.+... + +.......++.|+|++++|++... ...|.+|++....
T Consensus 100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 9998875 79999999976 333221 1 112345789999999999887643 4579999997654
Q ss_pred ee--EEe-ecccCCeEEEEeeCCCeEE--EEeCCCcEEEEecC--CCeeeE---Eec------CCCCeeEEEeecCCe--
Q 010296 296 YI--STL-FGHQSEVLTIDCLRKERVL--TVGRDRSMQLWKVP--EESRLV---FRA------PASSLECCCFISNDE-- 357 (513)
Q Consensus 296 ~~--~~~-~~~~~~v~~~~~~~~~~~~--~~~~d~~i~iwd~~--~~~~~~---~~~------~~~~v~~~~~~~~~~-- 357 (513)
.. ..+ .......+.+.|+|++.++ +.-.++.|.+|++. .+.... ... .......+.++|+|+
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l 259 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL 259 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence 31 122 2344567899999998544 44468899999988 332221 111 112567899999997
Q ss_pred EEEEeCCCCEEEEecC--CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC
Q 010296 358 FLSGSDDGSIELWSLL--RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD 435 (513)
Q Consensus 358 ~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 435 (513)
+++....+.|.+|++. +++. ..+... .........++++|+|+
T Consensus 260 yvsnr~~~sI~vf~~d~~~g~l-~~~~~~----------------------------------~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPATGTL-TLVQTV----------------------------------PTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp EEEECTTTEEEEEEECTTTTTE-EEEEEE----------------------------------EESSSSEEEEEE-TTSS
T ss_pred EEEeccCCEEEEEEEecCCCce-EEEEEE----------------------------------eCCCCCccEEEEeCCCC
Confidence 3455677889999993 2332 222110 00011278999999999
Q ss_pred EEEEec-CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEe
Q 010296 436 LAASGA-GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAF 475 (513)
Q Consensus 436 ~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~ 475 (513)
+|+++. .++.|.+|++......+.............||.|
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 998876 5678999998654344444443222344566665
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.5e-12 Score=118.64 Aligned_cols=298 Identities=7% Similarity=0.036 Sum_probs=198.5
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
......|++|+....|+|+||.||.++|..+.+...-....+ +.....-.....+.+|...|..+.|+.+...|-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccc
Confidence 346689999999999999999999999998876543322111 1111111223367899999999999999999999
Q ss_pred EeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
...+|.|.||-+-.+.....+. ...+.|.+|+|+.+|..++....||.|.+=.+...+.-.. .-.......+.|+++
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQLLAHVLWSED 167 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchheccceeeccc
Confidence 9999999999998876554432 2556789999999999999999999998888765443211 111223457889998
Q ss_pred CeEE-EEeCCCcEEEEecCCCeee------------EEecCCCCeeEEEeec--------CC-eEEEEeCCCCEEEEecC
Q 010296 316 ERVL-TVGRDRSMQLWKVPEESRL------------VFRAPASSLECCCFIS--------ND-EFLSGSDDGSIELWSLL 373 (513)
Q Consensus 316 ~~~~-~~~~d~~i~iwd~~~~~~~------------~~~~~~~~v~~~~~~~--------~~-~~~~~~~dg~i~iwd~~ 373 (513)
..++ .+-..|.+.+||....-.. .+......+..+.|.. +. .|+++-.+|.+.|..-.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 7544 6667899999997653211 1122223355555542 22 37788888888776543
Q ss_pred CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---------C
Q 010296 374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---------G 444 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---------g 444 (513)
+......+... -.+..+.|+++|.+||+++.+ +
T Consensus 248 ND~~Pvv~dtg--------------------------------------m~~vgakWnh~G~vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 248 NDPEPVVVDTG--------------------------------------MKIVGAKWNHNGAVLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred CCCCCeEEecc--------------------------------------cEeecceecCCCcEEEEccCcccccCccccc
Confidence 33222222111 128899999999999998854 2
Q ss_pred cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccc
Q 010296 445 SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNG 504 (513)
Q Consensus 445 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~ 504 (513)
.|.+|..-. ..+..+.. ....|++++|-..|-.++.+ -|+.|.+=+..+..+-+
T Consensus 290 ~v~Fysp~G--~i~gtlkv--pg~~It~lsWEg~gLriA~A--vdsfiyfanIRP~ykWg 343 (1189)
T KOG2041|consen 290 KVHFYSPYG--HIVGTLKV--PGSCITGLSWEGTGLRIAIA--VDSFIYFANIRPEYKWG 343 (1189)
T ss_pred eEEEeccch--hheEEEec--CCceeeeeEEcCCceEEEEE--ecceEEEEeecccceEE
Confidence 455554322 12223332 35679999998888777766 35566665555554433
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=9.3e-12 Score=120.96 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=109.5
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeCCC--cEEEEeC
Q 010296 218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDR--TVKIWNA 291 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~ 291 (513)
.+...+.+.+|+|+|++|+.++.. ..|++|++.+++.... ..+...+.+++|+|+++.|+. .+.++ .|++|++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 455568899999999999987654 4799999988765433 335566778999999997764 44444 5999999
Q ss_pred CCCceeEEeecccCCeEEEEeeCCCe-EEEEeC-CC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCC-
Q 010296 292 EDRAYISTLFGHQSEVLTIDCLRKER-VLTVGR-DR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDG- 365 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg- 365 (513)
.++... .+..+........|+|++. ++.++. .+ .|+++++.++....+...........|+|++. ++.++.++
T Consensus 266 ~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 266 DGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred CCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCC
Confidence 877543 3444545556778999885 444443 33 58888887766555554555667788999986 55555554
Q ss_pred --CEEEEecCCCC
Q 010296 366 --SIELWSLLRKK 376 (513)
Q Consensus 366 --~i~iwd~~~~~ 376 (513)
.|.+||+.++.
T Consensus 345 ~~~i~~~d~~~~~ 357 (417)
T TIGR02800 345 GFNIAVMDLDGGG 357 (417)
T ss_pred ceEEEEEeCCCCC
Confidence 68888887754
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.2e-11 Score=111.49 Aligned_cols=277 Identities=16% Similarity=0.187 Sum_probs=179.8
Q ss_pred CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296 161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL 240 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 240 (513)
.=+-+.|||-|.||+|-..-| |.+|--.+...++.+ .|. .|.-+.|||+.+||+|-+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--------------------~Hp-~Vq~idfSP~EkYLVT~s~ 269 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--------------------YHP-GVQFIDFSPNEKYLVTYSP 269 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--------------------cCC-CceeeecCCccceEEEecC
Confidence 356789999999999998766 788976666655544 333 3888999999999999653
Q ss_pred -----------CCcEEEEeCCCcceeeeccC--cCCCeE-EEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC
Q 010296 241 -----------DRHIHLWDTRIQEHIQAFPG--HRGPVS-CLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE 306 (513)
Q Consensus 241 -----------dg~i~vwd~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 306 (513)
...++|||+.+|...+.|.. ....++ -+.||.|++++|.-.. .+|.||+..+..++..-.-....
T Consensus 270 ~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~g 348 (698)
T KOG2314|consen 270 EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISG 348 (698)
T ss_pred CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCcc
Confidence 25799999999998888775 223333 3589999999987665 57999998775544333334567
Q ss_pred eEEEEeeCCCeEEEEeC------CCcEEEEecCCCeeeEEe-cCCCCeeEEEeecCCeEEEEeCC-----------CCEE
Q 010296 307 VLTIDCLRKERVLTVGR------DRSMQLWKVPEESRLVFR-APASSLECCCFISNDEFLSGSDD-----------GSIE 368 (513)
Q Consensus 307 v~~~~~~~~~~~~~~~~------d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d-----------g~i~ 368 (513)
|....|+|.+.+++--. -..+.+..+.+++.+... .++-.-..+.|..+|.+++.-.| ..+.
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 88899999876654321 234555566555544221 12212223445555544432211 1233
Q ss_pred EEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC---CC
Q 010296 369 LWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG---NG 444 (513)
Q Consensus 369 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---dg 444 (513)
|+.++... ++..+. ....|...+|-|.|..+++-+. ..
T Consensus 429 IfrireKdIpve~ve--------------------------------------lke~vi~FaWEP~gdkF~vi~g~~~k~ 470 (698)
T KOG2314|consen 429 IFRIREKDIPVEVVE--------------------------------------LKESVIAFAWEPHGDKFAVISGNTVKN 470 (698)
T ss_pred EEEeeccCCCceeee--------------------------------------cchheeeeeeccCCCeEEEEEcccccc
Confidence 44433322 111111 1223889999999988776553 36
Q ss_pred cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEe--cCCCcccccccCC
Q 010296 445 SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGV--GQEPRLGRWGHLP 499 (513)
Q Consensus 445 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~~dg~v~~W~~~~ 499 (513)
+|.+|.+.+.......+..+. ....+.|.|+|.|+++++++ |..|.+.++|..-
T Consensus 471 tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 471 TVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 799999985434444444443 35678899999999998774 3468888888763
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=2.3e-11 Score=102.67 Aligned_cols=268 Identities=15% Similarity=0.160 Sum_probs=180.4
Q ss_pred CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCccee
Q 010296 180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS---DGR-YLASGGLDRHIHLWDTRIQEHI 255 (513)
Q Consensus 180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~s~~~dg~i~vwd~~~~~~~ 255 (513)
.|.+.+|++...+... + .. ....-...+..+.|.- +|. .|+-+...|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~-l----~~-----------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-L----DT-----------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCc-c----ce-----------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4678888887665432 1 00 0112234566677754 444 4566677899999986554444
Q ss_pred eeccCcC------CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce--eEEeecccCCeEEEEeeCC--CeEEEEeCCC
Q 010296 256 QAFPGHR------GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY--ISTLFGHQSEVLTIDCLRK--ERVLTVGRDR 325 (513)
Q Consensus 256 ~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~ 325 (513)
..+.+-. ....++.|++.+..++++-.+|.+.+-+...... ++.++.|.-.++...|+.. +.+++|+.|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~ 188 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDG 188 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCc
Confidence 3443311 1245778899999999999999999776655544 3477889999999998763 3556999999
Q ss_pred cEEEEecCCCeee---EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCC-CCeeEEeecCCCcccCCCCcccCcC
Q 010296 326 SMQLWKVPEESRL---VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLR-KKPVYIVKNAHPLLDGLKNFEQDEG 399 (513)
Q Consensus 326 ~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
.+..||++..... ....|...|.++.-+|.. .+++|+.|-.|++||.++ ++|+..-...
T Consensus 189 ~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~--------------- 253 (339)
T KOG0280|consen 189 SLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG--------------- 253 (339)
T ss_pred eEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc---------------
Confidence 9999999944433 245678889999888764 488999999999999984 6666543322
Q ss_pred ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC--CEEEEecCCCcEEEEEeCCCCcceeeeee--cCcccEEEEEEe
Q 010296 400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS--DLAASGAGNGSVRLWAIESETKDIQPLYN--LPLVGFVNSLAF 475 (513)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~g~~dg~v~vwd~~~~~~~~~~~~~--~~~~~~v~~v~~ 475 (513)
+.|..+..+|.- .+|+++-.+| .+|-++......++.... ..|.+-+..-.|
T Consensus 254 -----------------------GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 254 -----------------------GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred -----------------------cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecccc
Confidence 339999999843 3455555554 788887765333221111 125566666777
Q ss_pred ecCCCEEEEEecCCCccc-ccccCCCcc
Q 010296 476 AKSGQFLIAGVGQEPRLG-RWGHLPAAR 502 (513)
Q Consensus 476 sp~~~~l~~~~~~dg~v~-~W~~~~~~~ 502 (513)
..-..+|++++..|..++ +|-..+++.
T Consensus 310 d~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 310 DSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred ccccceeeeeeccccceeeeeeeccCCc
Confidence 555568999888998855 997776654
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=5.1e-12 Score=110.69 Aligned_cols=210 Identities=10% Similarity=0.125 Sum_probs=156.6
Q ss_pred hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-
Q 010296 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR- 233 (513)
Q Consensus 155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 233 (513)
....+++|..++... ..|++|-.+|.+.+|....+..-... . ........+..|.-++...
T Consensus 101 ~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hss~---------------l-~~la~g~g~~~~r~~~~~p~ 162 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHSSK---------------L-IKLATGPGLYDVRQTDTDPY 162 (412)
T ss_pred cccccccccchhhcC--CEEEEEecCCcEEEEeccCCcccccc---------------c-eeeecCCceeeeccCCCCCc
Confidence 334566677666643 46888899999999999855421100 0 0012234567777777544
Q ss_pred EEEEEeCC--CcEEEEeCCCcceeeeccCc---------CCCeEEEEEecC--CCeEEEEeCCCcEEEEeCCCC-ceeEE
Q 010296 234 YLASGGLD--RHIHLWDTRIQEHIQAFPGH---------RGPVSCLTFRQG--TSELFSGSFDRTVKIWNAEDR-AYIST 299 (513)
Q Consensus 234 ~l~s~~~d--g~i~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~ 299 (513)
.+++|+.. ..+.|||+...+.+..-+.- .-.++++.|.+. ...|++++.-+.|++||.+.+ +++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 55668888 88999999988655443321 124567888887 788999999999999999865 46777
Q ss_pred eecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCC
Q 010296 300 LFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRK 375 (513)
Q Consensus 300 ~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~ 375 (513)
+.-...++.++...|++.++ ++..-+.+..||++.+... .+.+..+.+.++..+|... +++++-|..|||+|+.+.
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77778899999999988665 8888999999999998877 3677788999999999976 679999999999999997
Q ss_pred CeeEEee
Q 010296 376 KPVYIVK 382 (513)
Q Consensus 376 ~~~~~~~ 382 (513)
+++....
T Consensus 323 kll~kvY 329 (412)
T KOG3881|consen 323 KLLHKVY 329 (412)
T ss_pred hhhhhhh
Confidence 7666543
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.9e-11 Score=116.70 Aligned_cols=216 Identities=14% Similarity=0.095 Sum_probs=135.9
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCC--cEEEEeC
Q 010296 218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDR--TVKIWNA 291 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~ 291 (513)
.+...+....|+|+|+.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|+ +.+.+| .|++||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 456678999999999999876643 469999998886543 332334556789999999887 444454 5888899
Q ss_pred CCCceeEEeecccCCeEEEEeeCCCe-EEEEe-CC--CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC
Q 010296 292 EDRAYISTLFGHQSEVLTIDCLRKER-VLTVG-RD--RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG 365 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg 365 (513)
.++... .+..+........|+|++. ++..+ .+ ..|+++++.++....+...........|+|++. ++..+ .++
T Consensus 275 ~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 275 ASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred CCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 887643 3444555567788999885 44443 33 357778887766543332223334568999986 43333 333
Q ss_pred --CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296 366 --SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN 443 (513)
Q Consensus 366 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 443 (513)
.|.+||+.+++... +..... .....|+|+|++|+..+.+
T Consensus 354 ~~~l~~~dl~tg~~~~-lt~~~~--------------------------------------~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 354 NFHVAAQDLQRGSVRI-LTDTSL--------------------------------------DESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ceEEEEEECCCCCEEE-ccCCCC--------------------------------------CCCceECCCCCEEEEEEec
Confidence 47788888775432 211100 1234799999988876643
Q ss_pred -C--cEEEEEeCCCCcceeeeeecCcccEEEEEEeecC
Q 010296 444 -G--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS 478 (513)
Q Consensus 444 -g--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 478 (513)
| .|+++++... ....+.. +.+.+...+|+|-
T Consensus 395 ~g~~~l~~~~~~g~--~~~~l~~--~~g~~~~p~ws~~ 428 (430)
T PRK00178 395 QGRGVLMLVSINGR--VRLPLPT--AQGEVREPSWSPY 428 (430)
T ss_pred CCceEEEEEECCCC--ceEECcC--CCCCcCCCccCCC
Confidence 3 4666666433 2222221 3455677778763
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.2e-10 Score=96.37 Aligned_cols=273 Identities=12% Similarity=0.146 Sum_probs=180.7
Q ss_pred hhhhccCCCeEEEEECCCCCeEEEEeC---CceEEEEeCCC--CccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 153 RVLLKHRQSVTAVALSEDDSKGFSASK---DGSILHWDVSS--GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~~~~~l~t~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
..+..+.+.++-|+|+|+.++|.++.. .|.|..|.++. |.... + . .......+-+.++
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-l-n---------------~~~~~g~~p~yvs 95 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-L-N---------------RQTLPGSPPCYVS 95 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-e-e---------------ccccCCCCCeEEE
Confidence 344567889999999999999998865 47788888775 33211 1 0 0111222348899
Q ss_pred EcCCCCEEEEEeC-CCcEEEEeCCC-cceeee--ccCcCCC----------eEEEEEecCCCeEEEEeC-CCcEEEEeCC
Q 010296 228 VSSDGRYLASGGL-DRHIHLWDTRI-QEHIQA--FPGHRGP----------VSCLTFRQGTSELFSGSF-DRTVKIWNAE 292 (513)
Q Consensus 228 ~s~~~~~l~s~~~-dg~i~vwd~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 292 (513)
++++|++|+++.. .|.|.++-++. |.+... +..|.+. +.+..|.|++++|+++.. --.|.+|++.
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence 9999999999876 48899999865 332211 1225554 889999999999998754 2369999998
Q ss_pred CCceeEE---eecccCCeEEEEeeCCCeEE--EEeCCCcEEEEecCCC--eeeEE---------ecCCCCeeEEEeecCC
Q 010296 293 DRAYIST---LFGHQSEVLTIDCLRKERVL--TVGRDRSMQLWKVPEE--SRLVF---------RAPASSLECCCFISND 356 (513)
Q Consensus 293 ~~~~~~~---~~~~~~~v~~~~~~~~~~~~--~~~~d~~i~iwd~~~~--~~~~~---------~~~~~~v~~~~~~~~~ 356 (513)
.+..... ........+.|.|+|+++++ ++--+++|-+|..... +...+ .........+.++++|
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG 255 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG 255 (346)
T ss_pred cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence 7764321 11345567899999999877 3446899999998774 22111 1223456678899999
Q ss_pred eEEEEeCC--CCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296 357 EFLSGSDD--GSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG 433 (513)
Q Consensus 357 ~~~~~~~d--g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 433 (513)
+|+.++.- ..|.+|.+... ..+...... ..+......+.|++.
T Consensus 256 rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~----------------------------------~teg~~PR~F~i~~~ 301 (346)
T COG2706 256 RFLYASNRGHDSIAVFSVDPDGGKLELVGIT----------------------------------PTEGQFPRDFNINPS 301 (346)
T ss_pred CEEEEecCCCCeEEEEEEcCCCCEEEEEEEe----------------------------------ccCCcCCccceeCCC
Confidence 97766644 35666666543 222222211 112222667889999
Q ss_pred CCEEEEecCC-CcEEEEEeCCCCcceeeeeecCcccEEEEEEee
Q 010296 434 SDLAASGAGN-GSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA 476 (513)
Q Consensus 434 ~~~l~~g~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s 476 (513)
+++|+++..+ ..|.+|.+...+..+..+..........||.|.
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 9999988855 579999998776666666554444455667664
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=3.4e-11 Score=117.04 Aligned_cols=205 Identities=11% Similarity=0.093 Sum_probs=136.4
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER- 317 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~- 317 (513)
..|.++|..... ...+..+...+.+..|+|++++|+.++.. ..|++|++.+++... +..+...+.++.|+|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 468888875443 34455566778999999999999877643 479999998876543 333556677889999985
Q ss_pred EE-EEeCC--CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC--CEEEEecCCCCeeEEeecCCCcccC
Q 010296 318 VL-TVGRD--RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG--SIELWSLLRKKPVYIVKNAHPLLDG 390 (513)
Q Consensus 318 ~~-~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 390 (513)
++ +.+.+ ..|++|++.++....+..+........|+|++. ++..+ ..+ .|+++++.+++.......
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~------- 320 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR------- 320 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-------
Confidence 44 33333 358899998776655544444455678999885 54443 333 577778776654322111
Q ss_pred CCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC---cEEEEEeCCCCcceeeeeecCcc
Q 010296 391 LKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG---SVRLWAIESETKDIQPLYNLPLV 467 (513)
Q Consensus 391 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~ 467 (513)
...+..+.|+|+|++|+.++.++ .|.+|++.++ ....+.. .
T Consensus 321 -------------------------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~---~ 364 (417)
T TIGR02800 321 -------------------------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTD---T 364 (417)
T ss_pred -------------------------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccC---C
Confidence 11256788999999999887765 7888888775 2232322 1
Q ss_pred cEEEEEEeecCCCEEEEEecCCCc
Q 010296 468 GFVNSLAFAKSGQFLIAGVGQEPR 491 (513)
Q Consensus 468 ~~v~~v~~sp~~~~l~~~~~~dg~ 491 (513)
.......|+|+|++|+.+...++.
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred CCCCCceECCCCCEEEEEEeCCCc
Confidence 223456899999999988555544
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.9e-11 Score=115.43 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=131.5
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeCCCc--EEEEeC
Q 010296 218 KQSKHILALAVSSDGRYLASGGLD---RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSFDRT--VKIWNA 291 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iwd~ 291 (513)
.+...+.+..|+|+|+.|+..+.. ..|++||+.+++... +....+......|+|+|+.|+. .+.+|. |++||+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 445678899999999998876543 358899998876532 2222233457899999998774 555664 888898
Q ss_pred CCCceeEEeecccCCeEEEEeeCCCeEE-EEe-CCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCC
Q 010296 292 EDRAYISTLFGHQSEVLTIDCLRKERVL-TVG-RDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDG 365 (513)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg 365 (513)
.+++. ..+..+........|+|++..+ ..+ .++ .|+++++.++...............+|+|+|. ++ +...++
T Consensus 294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 87764 3444455566788999998544 333 333 56677777665543332223334568999986 43 333444
Q ss_pred C--EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC
Q 010296 366 S--IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN 443 (513)
Q Consensus 366 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 443 (513)
. |.++|+.+++... +.... ......|+|+|++|+..+.+
T Consensus 373 ~~~I~~~dl~~g~~~~-lt~~~--------------------------------------~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 373 KFNIARQDLETGAMQV-LTSTR--------------------------------------LDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred ceEEEEEECCCCCeEE-ccCCC--------------------------------------CCCCceECCCCCEEEEEEec
Confidence 4 4556776665422 21100 01234699999988765543
Q ss_pred -C--cEEEEEeCCCCcceeeeeecCcccEEEEEEeec
Q 010296 444 -G--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAK 477 (513)
Q Consensus 444 -g--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp 477 (513)
| .|+++++... ....+.. +.+.+...+|+|
T Consensus 414 ~g~~~l~~~~~~G~--~~~~l~~--~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSIDGR--FKARLPA--GQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEECCCC--ceEECcC--CCCCcCCCccCC
Confidence 3 3666676433 2233322 345677788887
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=6.9e-13 Score=136.30 Aligned_cols=199 Identities=17% Similarity=0.294 Sum_probs=159.8
Q ss_pred hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
+.|-..|.++.-+|...+.+||+.||.|++|....+..+.++ ...+. ..|+.+.|+.+|+.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~-----------------rt~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF-----------------RTAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe-----------------eccCc-chhhhhhhcccCCce
Confidence 345567889999999999999999999999999988877665 22233 779999999999999
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe---CCCcEEEEeCCCC---ceeEEeecccCCeEE
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS---FDRTVKIWNAEDR---AYISTLFGHQSEVLT 309 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~v~~ 309 (513)
..+..||.+.+|.+. .++....+.|....+.+.|-. ..+++++ .++.+.+||..-. .++. ..|.+.+++
T Consensus 2267 ~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATV 2341 (2439)
T ss_pred eeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceE
Confidence 999999999999976 677777888999999999876 5577654 4789999996532 2333 679999999
Q ss_pred EEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296 310 IDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAH 385 (513)
Q Consensus 310 ~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (513)
+++.|... +++|+.+|.|++||++..+....... +.....|++|+..|.|+||++.....++++...|
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCchhh
Confidence 99999765 55999999999999987665422111 3344468999999999999999988888777655
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=7.3e-10 Score=114.94 Aligned_cols=335 Identities=14% Similarity=0.161 Sum_probs=195.8
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccc----------------cCCChhh-hccCCCC-------CC
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKY----------------LWPSEEV-LKSHGAK-------DP 212 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~----------------~~~~~~~-~~~~~~~-------~~ 212 (513)
.-...|.|++||||+..|+..+.+++|.+-.- +...+.. =|...++ +.....+ .|
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 34678999999999999999998888877642 1211111 1111111 0000000 11
Q ss_pred ------CCCCCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE
Q 010296 213 ------QGRATKQSKHILALAVSSDGRYLASGGL------DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG 280 (513)
Q Consensus 213 ------~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 280 (513)
...+. +...-..|+|-.||.+||+.+. -..|+||+-+ |....+-..-.+--.+++|.|.|++|++.
T Consensus 197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence 11222 4556778999999999998774 2579999954 66555544444445678999999999877
Q ss_pred eC---CCcEEEEeCCC---CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee----EEecCCCCeeEE
Q 010296 281 SF---DRTVKIWNAED---RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL----VFRAPASSLECC 350 (513)
Q Consensus 281 ~~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~ 350 (513)
-. ...|.+|.-+. ++....+......|..+.|++++.+++.-....|.+|...+-.-. ........+..+
T Consensus 275 q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 275 QRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred EEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 54 34566666433 222222223556899999999998887766667999988765422 222233345559
Q ss_pred EeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCC-CcCCCCCcceEEE
Q 010296 351 CFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPG-SYHSSSAYSWVSS 427 (513)
Q Consensus 351 ~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~i~~ 427 (513)
.|+|.. +|...+.+|.+..+++.-.... ....+........--++..+.+..-....+++. ..........|.+
T Consensus 355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~---s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSR---SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred EECCCCCCEEEEEecCCcEEEEEEEEEEEe---cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 999965 4777777788877664211000 000000000001111122222222222222221 1122334567999
Q ss_pred EEEecCCCEEEEecCCCcEEEEEeCCCCcc----ee---eeee--------cCcccEEEEEEeecCCCEEEEEecC--CC
Q 010296 428 VTVCGGSDLAASGAGNGSVRLWAIESETKD----IQ---PLYN--------LPLVGFVNSLAFAKSGQFLIAGVGQ--EP 490 (513)
Q Consensus 428 ~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~----~~---~~~~--------~~~~~~v~~v~~sp~~~~l~~~~~~--dg 490 (513)
++|++++..+++-..||.|.+|........ .. .+.. ......+..++|..+..++++.... -.
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQS 511 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccc
Confidence 999999988999999999999996543211 00 0000 0124557889998888777766443 36
Q ss_pred ccccccc
Q 010296 491 RLGRWGH 497 (513)
Q Consensus 491 ~v~~W~~ 497 (513)
.+.+++.
T Consensus 512 ~i~~~~~ 518 (928)
T PF04762_consen 512 KIVLVDI 518 (928)
T ss_pred eEEEEEe
Confidence 7777766
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=9.7e-10 Score=100.23 Aligned_cols=235 Identities=9% Similarity=0.010 Sum_probs=147.0
Q ss_pred ECCCCCeEEEEeC----------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 167 LSEDDSKGFSASK----------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 167 ~s~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
+|||++.|+++.. +..|.+||+.+.+.+..+.-... |. .........++++|+|++|+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~---------p~---~~~~~~~~~~~ls~dgk~l~ 120 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG---------PR---FLVGTYPWMTSLTPDNKTLL 120 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---------ch---hhccCccceEEECCCCCEEE
Confidence 9999999987765 78999999999998876621100 00 00122345789999999999
Q ss_pred EEe-C-CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-Cce-eEE---eecccCCeEE
Q 010296 237 SGG-L-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED-RAY-IST---LFGHQSEVLT 309 (513)
Q Consensus 237 s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~---~~~~~~~v~~ 309 (513)
+.. . +..|.++|+.+++.+..+.-. +...-+..+.. .++ +-+.||......+.. ++. ... +.....++..
T Consensus 121 V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~-~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~ 197 (352)
T TIGR02658 121 FYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTAND-TFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN 197 (352)
T ss_pred EecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCC-ccE-EEeecCceEEEEecCCCceEEeeeeeecCCcccccc
Confidence 776 3 689999999999998877642 12222222222 222 223344444433322 211 111 1110001000
Q ss_pred -EEeeC-CCeEEEEeCCCcEEEEecCCCeee-----EEec--------CCCCeeEEEeecCCe-EEE-Ee---------C
Q 010296 310 -IDCLR-KERVLTVGRDRSMQLWKVPEESRL-----VFRA--------PASSLECCCFISNDE-FLS-GS---------D 363 (513)
Q Consensus 310 -~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~-----~~~~--------~~~~v~~~~~~~~~~-~~~-~~---------~ 363 (513)
-.+.+ ++..+-.+..|+|++.|+...... .... ....+.-+++++++. +++ .. .
T Consensus 198 rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 198 HPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred CCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 03344 777776666699999996543221 1110 123344589998875 333 21 2
Q ss_pred CCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEec-
Q 010296 364 DGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGA- 441 (513)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~- 441 (513)
.+.|.++|..+++.+..+..... +..++++|+++ +|++..
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~~--------------------------------------~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGHE--------------------------------------IDSINVSQDAKPLLYALST 319 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCCc--------------------------------------eeeEEECCCCCeEEEEeCC
Confidence 25799999999999999876543 89999999999 888766
Q ss_pred CCCcEEEEEeCCC
Q 010296 442 GNGSVRLWAIESE 454 (513)
Q Consensus 442 ~dg~v~vwd~~~~ 454 (513)
.++.|.++|+.++
T Consensus 320 ~s~~VsViD~~t~ 332 (352)
T TIGR02658 320 GDKTLYIFDAETG 332 (352)
T ss_pred CCCcEEEEECcCC
Confidence 5788999999887
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=1.9e-11 Score=120.10 Aligned_cols=191 Identities=15% Similarity=0.290 Sum_probs=148.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC----eEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296 226 LAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP----VSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
..+.-....++.++.+..+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+.........+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 334445667888888999999999887776666532211 1122346666789999999999999998544444688
Q ss_pred cccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCee
Q 010296 302 GHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPV 378 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~ 378 (513)
+|.+.|.++.++.+| ++++++.|.++++|++.+.... ...+|...+..+++.|+ .+++++.|.+.++|+... +.+
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~-~~l 250 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNG-TQL 250 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEeccc-cee
Confidence 999999999999988 5569999999999999987765 57789999999999999 899999999999996543 333
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
..+..+.. ..|..++..++...++|++.||.+++|++...
T Consensus 251 ~~y~~h~g------------------------------------~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 251 EVYDEHSG------------------------------------KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhhh------------------------------------cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 33332221 22999999999999999999999999998764
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.1e-10 Score=105.14 Aligned_cols=268 Identities=11% Similarity=0.126 Sum_probs=174.9
Q ss_pred CeEEEEECCCCCeEEEEeC-----------CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 161 SVTAVALSEDDSKGFSASK-----------DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
.|.-+.|||+.+||+|-+. ...++|||+.+|...+.+... ......-.-+.||
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~----------------~~~~~~WP~frWS 314 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI----------------KSPYLKWPIFRWS 314 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc----------------CCCccccceEEec
Confidence 5889999999999998763 257999999999988765211 1111112346899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-----CCcEEEEeCCCCceeEEeeccc
Q 010296 230 SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-----DRTVKIWNAEDRAYISTLFGHQ 304 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~ 304 (513)
.|++++|.-.. ..|.||+..+-.++..-.-.-..|....|+|.++.||--.- -..+.+-.+.+++.+++..-+.
T Consensus 315 ~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 315 HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence 99999998776 56999997765444333334567888999999888874322 2457777888877777665555
Q ss_pred CCeEEEEeeCCCeEEEEeCC-----------CcEEEEecCCCeee-EEecCCCCeeEEEeecCCe-EEEEe---CCCCEE
Q 010296 305 SEVLTIDCLRKERVLTVGRD-----------RSMQLWKVPEESRL-VFRAPASSLECCCFISNDE-FLSGS---DDGSIE 368 (513)
Q Consensus 305 ~~v~~~~~~~~~~~~~~~~d-----------~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~~~---~dg~i~ 368 (513)
-.=..+.|..+|.+++.-.+ .++-|+.++..... ........|...+|-|.|. |++.+ ...++.
T Consensus 394 VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 394 VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccccccee
Confidence 44456677777766554322 12445555443322 2334456778889999884 54332 245677
Q ss_pred EEecCC-CC---eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe---c
Q 010296 369 LWSLLR-KK---PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG---A 441 (513)
Q Consensus 369 iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g---~ 441 (513)
+|-+.+ .. .+..+. ....+.+.|+|.|++++.+ |
T Consensus 474 fY~~e~~~~~~~lVk~~d---------------------------------------k~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 474 FYAVETNIKKPSLVKELD---------------------------------------KKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred EEEeecCCCchhhhhhhc---------------------------------------ccccceEEEcCCCcEEEEEEecc
Confidence 777663 11 111111 1227889999999998876 4
Q ss_pred CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEec
Q 010296 442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG 487 (513)
Q Consensus 442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 487 (513)
..|.+.++|+.-. .++......| ...+.+.|.|.|+|++++++
T Consensus 515 ~~g~l~F~D~~~a--~~k~~~~~eh-~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 515 RRGDLEFYDTDYA--DLKDTASPEH-FAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEecchh--hhhhccCccc-cccccceECCCCCEEEEeee
Confidence 5789999998742 1222222223 34677999999999999843
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.9e-10 Score=111.88 Aligned_cols=208 Identities=10% Similarity=0.035 Sum_probs=134.5
Q ss_pred cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-E
Q 010296 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-V 318 (513)
Q Consensus 243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 318 (513)
.|.++|...+.. ..+..+...+....|+|+|+.|+..+.+ ..|.+|++.+++... +....+.+....|+|++. +
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 477888765543 4444567789999999999998866543 369999998876533 333344556789999985 4
Q ss_pred E-EEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CCC--CEEEEecCCCCeeEEeecCCCcccCC
Q 010296 319 L-TVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DDG--SIELWSLLRKKPVYIVKNAHPLLDGL 391 (513)
Q Consensus 319 ~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 391 (513)
+ +...++ .|++||+.++....+..+........|+|+|. ++..+ .+| .|+++++.+++........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~------- 330 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG------- 330 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-------
Confidence 4 344444 68888998877655555555566778999986 44333 333 4677777776643321100
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-C--cEEEEEeCCCCcceeeeeecCccc
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-G--SVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-g--~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
.......|+|+|++|+..+.. + .|.+||+.++. ...+... .
T Consensus 331 -------------------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~~---~ 374 (430)
T PRK00178 331 -------------------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS--VRILTDT---S 374 (430)
T ss_pred -------------------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC--EEEccCC---C
Confidence 013456899999998877643 3 58888988762 2333221 1
Q ss_pred EEEEEEeecCCCEEEEEecCCCccccc
Q 010296 469 FVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
......|+|||++|+.+....|.-.+|
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEE
Confidence 223468999999998885555554444
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=5.1e-10 Score=107.52 Aligned_cols=218 Identities=11% Similarity=-0.018 Sum_probs=129.7
Q ss_pred CcccEEEEEEcCCCCE--E-EEEeCC--CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-CC----cEEE
Q 010296 219 QSKHILALAVSSDGRY--L-ASGGLD--RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DR----TVKI 288 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~--l-~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i 288 (513)
....+.+-.|+|||+. + ++...+ ..|.+.++.+++.... ....+......|+|||+.|+..+. +| .+.+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 3445667799999975 2 233333 4588888887764332 223445567899999998886543 22 3444
Q ss_pred EeCCCC---ceeEEeecccCCeEEEEeeCCCe-EEEEe-CCCcEEEE--ecCC--CeeeEEecCCCCeeEEEeecCCe-E
Q 010296 289 WNAEDR---AYISTLFGHQSEVLTIDCLRKER-VLTVG-RDRSMQLW--KVPE--ESRLVFRAPASSLECCCFISNDE-F 358 (513)
Q Consensus 289 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~iw--d~~~--~~~~~~~~~~~~v~~~~~~~~~~-~ 358 (513)
|++..+ .................|+|+|. ++..+ .++...+| ++.. +....+......+....|+|+|. +
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 776653 22222222233446789999985 55444 45654555 4432 22333333445667889999996 4
Q ss_pred EEEeC-C--CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC
Q 010296 359 LSGSD-D--GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD 435 (513)
Q Consensus 359 ~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 435 (513)
+..+. + ..|.+||+.+++........ ..+....|+|+|+
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~~Lt~~~--------------------------------------~~~~~p~wSpDG~ 383 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDYQLTTSP--------------------------------------ENKESPSWAIDSL 383 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeEEccCCC--------------------------------------CCccceEECCCCC
Confidence 43332 2 46899999888754332110 1156788999999
Q ss_pred EEEEecC---CCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC
Q 010296 436 LAASGAG---NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG 479 (513)
Q Consensus 436 ~l~~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 479 (513)
+|+..+. ...|++|++..+. ...+.. ..+.+...+|+|-.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~--~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKK--TRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCC--EEEeec--CCCcccCceecCCC
Confidence 8775432 3568888887762 233332 34556778888753
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.6e-10 Score=109.53 Aligned_cols=208 Identities=14% Similarity=0.078 Sum_probs=130.2
Q ss_pred hhhhccCCCeEEEEECCCCCeE---EEEeCC--ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 153 RVLLKHRQSVTAVALSEDDSKG---FSASKD--GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~~~~~l---~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
+.+......+..-+|+|||+.+ ++...+ ..|.+.++.++..... ..........+
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l--------------------t~~~g~~~~p~ 237 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI--------------------LALQGNQLMPT 237 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe--------------------ecCCCCccceE
Confidence 3444456667788999999752 244444 3577778887764331 12233455689
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEeCCCc---ceeeeccCcCCCeEEEEEecCCCeEEEEe-CCCcEEEE--eCCC-Cc
Q 010296 228 VSSDGRYLASGGL-----DRHIHLWDTRIQ---EHIQAFPGHRGPVSCLTFRQGTSELFSGS-FDRTVKIW--NAED-RA 295 (513)
Q Consensus 228 ~s~~~~~l~s~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~ 295 (513)
|||||+.|+..+. +-.+.+|++..+ ........+.......+|+|+|+.|+..+ .+|...+| ++.. +.
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9999998887653 223444776653 33333332333456789999999887655 46654455 4432 23
Q ss_pred eeEEeecccCCeEEEEeeCCCeEE-EEeC---CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeC--CCCE
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVL-TVGR---DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSD--DGSI 367 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~--dg~i 367 (513)
....+..+...+....|+|+|..+ ..+. ...|.+||+.++....+......+....|+|+|. ++ ++.. ...|
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 344454455567788999998644 4433 2469999998887765554444567789999986 43 3332 3568
Q ss_pred EEEecCCCCeeEE
Q 010296 368 ELWSLLRKKPVYI 380 (513)
Q Consensus 368 ~iwd~~~~~~~~~ 380 (513)
.+|++.+++....
T Consensus 398 ~~vdl~~g~~~~L 410 (428)
T PRK01029 398 YLISLITKKTRKI 410 (428)
T ss_pred EEEECCCCCEEEe
Confidence 8889887765443
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=4.9e-12 Score=130.29 Aligned_cols=189 Identities=13% Similarity=0.293 Sum_probs=155.3
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
..+-..|.++.-+|...+.++|+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|.+. .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 34556788899999999999999999999999998888777653 33789999999999999999999999999987 56
Q ss_pred eeEEeecccCCeEEEEeeCCCeEEEEe---CCCcEEEEecCCC--eeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEE
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVLTVG---RDRSMQLWKVPEE--SRLVFRAPASSLECCCFISNDE-FLSGSDDGSIEL 369 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~---~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~i 369 (513)
+....+.|......+.|.. ..+++++ .++.+.+||.... .......|...++++++.|... |++|+.+|.|++
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred ceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 6667778888888888876 3344444 4789999997433 3345588999999999999986 779999999999
Q ss_pred EecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296 370 WSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449 (513)
Q Consensus 370 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw 449 (513)
||++..+.+++++. +. ...+|++|+..|.|+||
T Consensus 2363 ~D~rqrql~h~~~~----------------------------------------------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA----------------------------------------------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred eehHHHHHHHHhhh----------------------------------------------hh-hhheeeccCcccceEEE
Confidence 99999887777652 22 34689999999999999
Q ss_pred EeCCC
Q 010296 450 AIESE 454 (513)
Q Consensus 450 d~~~~ 454 (513)
++...
T Consensus 2396 ~~s~~ 2400 (2439)
T KOG1064|consen 2396 RLSEF 2400 (2439)
T ss_pred Ecccc
Confidence 99876
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.36 E-value=7.2e-10 Score=105.96 Aligned_cols=263 Identities=12% Similarity=0.061 Sum_probs=163.9
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
.+..+++++.+|.|..+|..+++.+...... . ........ ++..+++++.++.++.+|.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~--~~~~~p~v--~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLD-----------------E--RLSGGVGA--DGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCC-----------------C--CcccceEE--cCCEEEEEcCCCEEEEEEC
Confidence 3668889999999999999999876543100 0 00011122 4667888888999999999
Q ss_pred CCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE-----EEEeeCCCeEEEEeCC
Q 010296 250 RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL-----TIDCLRKERVLTVGRD 324 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~d 324 (513)
.+|+.+...... ..+.+.-.. .+..++.++.+|.|+.||..+++.+..+......+. +... .++.++++..+
T Consensus 123 ~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~ 199 (377)
T TIGR03300 123 EDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAG 199 (377)
T ss_pred CCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCC
Confidence 999987665532 222221111 245677788899999999999998877653322111 1111 24667788888
Q ss_pred CcEEEEecCCCeeeEEecCCC-----C------eeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCC
Q 010296 325 RSMQLWKVPEESRLVFRAPAS-----S------LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKN 393 (513)
Q Consensus 325 ~~i~iwd~~~~~~~~~~~~~~-----~------v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
+.+..+|+.++..+....... . +.+.....++.+++++.+|.++.||..+++.+.......
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-------- 271 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-------- 271 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--------
Confidence 999999998887653211100 0 111111235677788889999999999998776553110
Q ss_pred cccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEE
Q 010296 394 FEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSL 473 (513)
Q Consensus 394 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v 473 (513)
..... ..+..+++++.+|.|..+|..++...... .... .....+.
T Consensus 272 -------------------------------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~-~~~~-~~~~ssp 316 (377)
T TIGR03300 272 -------------------------------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKN-DELK-YRQLTAP 316 (377)
T ss_pred -------------------------------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcc-cccc-CCccccC
Confidence 11111 23557888889999999999887322221 1111 1111222
Q ss_pred EeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 474 AFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 474 ~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
.. .+..|+++ +.+|.|.+|+..++..
T Consensus 317 ~i--~g~~l~~~-~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 317 AV--VGGYLVVG-DFEGYLHWLSREDGSF 342 (377)
T ss_pred EE--ECCEEEEE-eCCCEEEEEECCCCCE
Confidence 22 35677777 7889999998766643
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.36 E-value=2e-09 Score=97.12 Aligned_cols=165 Identities=9% Similarity=0.047 Sum_probs=132.1
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCC-cEEEEe
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDR-HIHLWD 248 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~vwd 248 (513)
+|.+++..|. |...|.+...+-.++ .+|...|.-..+..+++-++.|..|| .+-|+|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq---------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd 388 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ---------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD 388 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE---------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence 6788888775 667776655544433 46777799999988888999999999 899999
Q ss_pred CCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEe-----C
Q 010296 249 TRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVG-----R 323 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~ 323 (513)
..+++.. .+...-+.|.++..+++|++++++.....|.++|+.++.....-+...+-|+.+.|+|++++++-+ .
T Consensus 389 ~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 389 KDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred cCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCccee
Confidence 9877654 444567899999999999999999999999999999998665555567789999999999888644 3
Q ss_pred CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe
Q 010296 324 DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE 357 (513)
Q Consensus 324 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 357 (513)
...|+++|+.+++......+...=.+-+|.|+++
T Consensus 468 tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 468 TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred eeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence 5679999999988876666666666678888886
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=3.7e-10 Score=104.62 Aligned_cols=189 Identities=16% Similarity=0.195 Sum_probs=149.0
Q ss_pred CCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEE------cC-----------
Q 010296 168 SEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAV------SS----------- 230 (513)
Q Consensus 168 s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------s~----------- 230 (513)
.|-..|+|....||.++||+...++....+-|.... .+..++..| +|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~----------------s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL----------------SGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhc----------------cCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 355678999999999999999998877655332111 222333333 22
Q ss_pred ---CCCEEEEEeCCCcEEEEeCCCcceeeecc--CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296 231 ---DGRYLASGGLDRHIHLWDTRIQEHIQAFP--GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS 305 (513)
Q Consensus 231 ---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 305 (513)
+...++-|...|.|.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+.....
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP 145 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC
Confidence 33467888899999999999999888876 4999999999999999999999999999999999999999998999
Q ss_pred CeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecC-----Ce-EE-EEeCCCCEEEEecCC
Q 010296 306 EVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISN-----DE-FL-SGSDDGSIELWSLLR 374 (513)
Q Consensus 306 ~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~-----~~-~~-~~~~dg~i~iwd~~~ 374 (513)
.+.+++++|++.++ +++ +.|++|++.+++.+ .|.+|.++|.+++|... |. ++ +...+..|.+|-+..
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999998555 444 68999999998876 78899999999999876 43 33 334455677776544
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1e-10 Score=108.21 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=148.4
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCceeEEeec---ccCCeEEEEee------C--------------CC-eEEEEeCCCcE
Q 010296 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFG---HQSEVLTIDCL------R--------------KE-RVLTVGRDRSM 327 (513)
Q Consensus 272 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~-~~~~~~~d~~i 327 (513)
|...+++....||.+++|+...++....+.. -.+...+..|. | +. .++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4457889999999999999988876655532 12233333332 2 11 24567788999
Q ss_pred EEEecCCCeeeE---EecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccc
Q 010296 328 QLWKVPEESRLV---FRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403 (513)
Q Consensus 328 ~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 403 (513)
.+|++..++... ...|...|.++.++.+- .|.+++.|+.+..|+......++.+....+.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~---------------- 146 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL---------------- 146 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc----------------
Confidence 999999887763 24678889988877664 4889999999999999999988888755443
Q ss_pred ccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecC-----
Q 010296 404 GHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKS----- 478 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~----- 478 (513)
+.+++++|||+.|++++. .|++|++.+. +.+..+.. |.++|++++|-.+
T Consensus 147 ---------------------~~sl~is~D~~~l~~as~--~ik~~~~~~k-evv~~ftg--h~s~v~t~~f~~~~~g~~ 200 (541)
T KOG4547|consen 147 ---------------------VSSLCISPDGKILLTASR--QIKVLDIETK-EVVITFTG--HGSPVRTLSFTTLIDGII 200 (541)
T ss_pred ---------------------cceEEEcCCCCEEEeccc--eEEEEEccCc-eEEEEecC--CCcceEEEEEEEeccccc
Confidence 899999999999999875 7999999998 44444544 8999999999988
Q ss_pred CCEEEEEecCCCcccccccCCCcccceEEE
Q 010296 479 GQFLIAGVGQEPRLGRWGHLPAARNGVLVH 508 (513)
Q Consensus 479 ~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~ 508 (513)
|.+++++...+-.+.+|-+....+...+..
T Consensus 201 G~~vLssa~~~r~i~~w~v~~~~kkks~~~ 230 (541)
T KOG4547|consen 201 GKYVLSSAAAERGITVWVVEKEDKKKSLSC 230 (541)
T ss_pred cceeeeccccccceeEEEEEcccccchhhe
Confidence 888888767777899998777555544433
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=1.2e-10 Score=100.54 Aligned_cols=200 Identities=16% Similarity=0.281 Sum_probs=145.0
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
...+++++.++++...|++|-..|++.-+.+..--... .+......|...|..+-|+-...++++
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm---------------~~~r~~~~h~~~v~~~if~~~~e~V~s 131 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM---------------TFLKDYLAHQARVSAIVFSLTHEWVLS 131 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc---------------chhhhhhhhhcceeeEEecCCceeEEE
Confidence 46789999999999999999999999988775322111 112234679999999999999999999
Q ss_pred EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC--CCceeEEeecccCCeEEEEeeCC
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE--DRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
.+.|..+.---.+.+..+..+.- ....+++.+.-. +.+.|...|.|.+..+. .-..+.++.+|.+.++++.|.+.
T Consensus 132 ~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~ 208 (404)
T KOG1409|consen 132 TGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG 208 (404)
T ss_pred eccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC
Confidence 99998775555555554433221 111122222211 45566666777666553 34568889999999999999985
Q ss_pred C-eEEEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCC
Q 010296 316 E-RVLTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRK 375 (513)
Q Consensus 316 ~-~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~ 375 (513)
. .++++..|..+.+||+.... .....+|...|..+...+-- .+++++.||.|.+|+++..
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 4 66699999999999996554 34667788888877766654 4889999999999998764
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.3e-10 Score=108.33 Aligned_cols=208 Identities=10% Similarity=0.037 Sum_probs=129.5
Q ss_pred cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC-C--CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-E
Q 010296 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-D--RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-V 318 (513)
Q Consensus 243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 318 (513)
.|.++|...... +.+..+...+.+..|+|+|+.|+..+. + ..|++||+.+++... +....+......|+|++. +
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 577778654433 344456778899999999999886654 2 258999998876432 222333445788999985 4
Q ss_pred E-EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCC--CEEEEecCCCCeeEEeecCCCcccCC
Q 010296 319 L-TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDG--SIELWSLLRKKPVYIVKNAHPLLDGL 391 (513)
Q Consensus 319 ~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 391 (513)
+ +...++. |+++|+.++....+..+........|+|++. ++ +...++ .|.++++.+++........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g------- 349 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG------- 349 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-------
Confidence 4 3455564 7888888776655554555567789999986 44 333344 4666677666543321110
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC-CC--cEEEEEeCCCCcceeeeeecCccc
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG-NG--SVRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg--~v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
......+|+|+|++|+..+. ++ .|.++|+.++ ....+... .
T Consensus 350 -------------------------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g--~~~~lt~~---~ 393 (448)
T PRK04792 350 -------------------------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG--AMQVLTST---R 393 (448)
T ss_pred -------------------------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC--CeEEccCC---C
Confidence 00334689999998877654 34 3555666665 22333221 1
Q ss_pred EEEEEEeecCCCEEEEEecCCCccccc
Q 010296 469 FVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
......|+|||++|+.+...+|.-.+|
T Consensus 394 ~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 394 LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEE
Confidence 122347999999998886666654344
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.33 E-value=1.3e-09 Score=99.15 Aligned_cols=274 Identities=15% Similarity=0.172 Sum_probs=178.8
Q ss_pred CCCeEEEEECCCCCeEEEEeCCc---------------eEEEEeCCCCccccccCCChhh--------------------
Q 010296 159 RQSVTAVALSEDDSKGFSASKDG---------------SILHWDVSSGKGVKYLWPSEEV-------------------- 203 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~-------------------- 203 (513)
...|..+.|+|.++||.|-+..+ .+.+||+.++..+..+......
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 35689999999999999987544 4999999998876654211111
Q ss_pred ---hccCCCCC--CCCC-CCCCcccEEEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEE
Q 010296 204 ---LKSHGAKD--PQGR-ATKQSKHILALAVSSDG--RYLAS-----GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTF 270 (513)
Q Consensus 204 ---~~~~~~~~--~~~~-~~~~~~~v~~~~~s~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 270 (513)
+..+.... .... ..-....|....|+|-+ ..|+. .+..+.+++|.+..+..+.+-.-....=..+.|
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 00000000 0000 00113568888999953 34454 346788999999877665543333333456889
Q ss_pred ecCCCeEEEEe-----------CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC-eEE--EEeCCCcEEEEecCCCe
Q 010296 271 RQGTSELFSGS-----------FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE-RVL--TVGRDRSMQLWKVPEES 336 (513)
Q Consensus 271 ~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~d~~i~iwd~~~~~ 336 (513)
.+.|++|+.-- ....++|+++.... +.......++|..++|.|.+ +|+ +|-..-.+.+++++.+
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 99998876321 12468888887443 33333568899999999965 454 4457889999999987
Q ss_pred eeEEecCCCCeeEEEeecCCe-EEEEe---CCCCEEEEecCCCCeeE-EeecCCCcccCCCCcccCcCccccccCCCCCC
Q 010296 337 RLVFRAPASSLECCCFISNDE-FLSGS---DDGSIELWSLLRKKPVY-IVKNAHPLLDGLKNFEQDEGKISNGHSENGNL 411 (513)
Q Consensus 337 ~~~~~~~~~~v~~~~~~~~~~-~~~~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 411 (513)
+.+..+...-..+.|+|.++ ++.++ ..|.|-+|+......+. .+....
T Consensus 309 -l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-------------------------- 361 (561)
T COG5354 309 -LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-------------------------- 361 (561)
T ss_pred -eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--------------------------
Confidence 55666667777889999986 44433 35889999987654433 333211
Q ss_pred CCCCcCCCCCcceEEEEEEecCCCEEEEec------CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296 412 NPGSYHSSSAYSWVSSVTVCGGSDLAASGA------GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 412 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 485 (513)
.+-+.|+|++.++.+.. .|..|.||++... .. + ..+.+.|.|.|++..+.
T Consensus 362 -------------~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~---f-------el~~~~W~p~~~~~tts 417 (561)
T COG5354 362 -------------TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KV---F-------ELTNITWDPSGQYVTTS 417 (561)
T ss_pred -------------ceEeeccCCceEEEecCCCcccccCcceEEEEecCc-hh---h-------hhhhccccCCcccceee
Confidence 45567999999888764 4788999999765 11 1 24557787777776555
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=4.5e-10 Score=95.02 Aligned_cols=204 Identities=13% Similarity=0.082 Sum_probs=142.8
Q ss_pred CCCeEEEEECC---CCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296 159 RQSVTAVALSE---DDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234 (513)
Q Consensus 159 ~~~V~~~~~s~---~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 234 (513)
+..++.|.|.- +|. .|+-+-..|.|.+|..........+.+-. ...-......++.|++.+..
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-------------~~ki~~~~~lslD~~~~~~~ 135 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-------------SKKISVVEALSLDISTSGTK 135 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-------------hhhhhheeeeEEEeeccCce
Confidence 45667777753 444 45667778889988876544333321100 00001113568899999999
Q ss_pred EEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCC-CCceeEE-eecccCCeEE
Q 010296 235 LASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAE-DRAYIST-LFGHQSEVLT 309 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~ 309 (513)
++++..+|.+.+-+...... ++.++.|...++...|+... +.+++|+.|+.+..||++ .++.+.. .+.|...|.+
T Consensus 136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S 215 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS 215 (339)
T ss_pred EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence 99999999999666554443 44788999999999997644 567899999999999999 3444443 4568899999
Q ss_pred EEeeCC--CeEEEEeCCCcEEEEecCCC-eeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCC
Q 010296 310 IDCLRK--ERVLTVGRDRSMQLWKVPEE-SRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRK 375 (513)
Q Consensus 310 ~~~~~~--~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~ 375 (513)
|..+|. ..+++|+.|..|++||.+.. +++......+.|..+..+|.-. ++.++.-.-.+|.+...+
T Consensus 216 I~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 216 IYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred EecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 998874 36779999999999999854 4444445568899999998653 445554444677776554
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=9.9e-09 Score=108.78 Aligned_cols=256 Identities=13% Similarity=0.159 Sum_probs=160.3
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCcceeeeccC--------------cCCCeEEEEEecCCCeEEEEeC-CCcEE
Q 010296 224 LALAVSSD-GRYLASGGLDRHIHLWDTRIQEHIQAFPG--------------HRGPVSCLTFRQGTSELFSGSF-DRTVK 287 (513)
Q Consensus 224 ~~~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 287 (513)
..+++++. +.++++-+..+.|++||.. +..+..+.+ +-.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 56788875 5667777778899999976 444433322 1123578999998887766544 57799
Q ss_pred EEeCCCCceeEEeecc-----------------cCCeEEEEeeC-CCeEE-EEeCCCcEEEEecCCCeeeEEecC-----
Q 010296 288 IWNAEDRAYISTLFGH-----------------QSEVLTIDCLR-KERVL-TVGRDRSMQLWKVPEESRLVFRAP----- 343 (513)
Q Consensus 288 iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~----- 343 (513)
++|+.++. +.++.+. -.....++++| ++.++ +...++.|++|+..++....+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987754 3333210 11346789998 56555 556788999999877655433211
Q ss_pred ----------CCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcc-cCCCCcccCcCccccccCCCCC
Q 010296 344 ----------ASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLL-DGLKNFEQDEGKISNGHSENGN 410 (513)
Q Consensus 344 ----------~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 410 (513)
......++++|++. +++-+.++.|++||+.++...... ...+.. .....+... .+.
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~~~~~~l~~fG~~----------dG~ 797 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDPTFSDNLFKFGDH----------DGV 797 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-ecccccCcccccccCC----------CCc
Confidence 12355689999874 556677899999999877542211 111000 000000000 000
Q ss_pred CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC------------cccEEEEEEeecC
Q 010296 411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP------------LVGFVNSLAFAKS 478 (513)
Q Consensus 411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~------------~~~~v~~v~~sp~ 478 (513)
- ..........++++++|.++++-+.++.|++||..++ .+..+.... .......|+++++
T Consensus 798 g------~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 798 G------SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred h------hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 0001112468899999999999999999999999876 222221110 1124678999999
Q ss_pred CCEEEEEecCCCcccccccCCCc
Q 010296 479 GQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 479 ~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
|+++++- +.+++|++|+..++.
T Consensus 870 G~lyVaD-t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVAD-TNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEE-CCCCEEEEEECCCCc
Confidence 9876666 888999999987653
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=4.1e-09 Score=109.51 Aligned_cols=310 Identities=14% Similarity=0.114 Sum_probs=180.5
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEE----eCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHW----DVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR 233 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 233 (513)
..+.|.++.|-++...++.+..+|.|.+. +..+..... ...-...|.+++||||+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDEE 133 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCcC
Confidence 45789999999999999999999999999 444333211 122356799999999999
Q ss_pred EEEEEeCCCcEEEEeCC---------------C--------cceeeeccC------------------------cCCCeE
Q 010296 234 YLASGGLDRHIHLWDTR---------------I--------QEHIQAFPG------------------------HRGPVS 266 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~---------------~--------~~~~~~~~~------------------------~~~~v~ 266 (513)
.|+..+.+++|.+-+-. . |+.-..|.| +...-.
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~ 213 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRV 213 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCce
Confidence 99999989888876411 0 111111111 222446
Q ss_pred EEEEecCCCeEEEEeC---C---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeC----CCcEEEEecCCCe
Q 010296 267 CLTFRQGTSELFSGSF---D---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR----DRSMQLWKVPEES 336 (513)
Q Consensus 267 ~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~ 336 (513)
.|+|..||.++++.+. . ..|+||+-. |....+...-.+--.+++|.|.|.++++.. ...|.+|.-..-+
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence 7899999999997764 2 579999965 555544444444456889999998886664 3567777755444
Q ss_pred eeEEe----cCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe--eEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296 337 RLVFR----APASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP--VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN 410 (513)
Q Consensus 337 ~~~~~----~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 410 (513)
.-.+. .....+..+.|++++.+++......|.+|-..+..- .+.+............+.+...........++.
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence 33332 335678999999999855444455599999887542 222221111110111111111110000000011
Q ss_pred CCCCCcCCCCCcceEEEEEEecC-----CCEEEEecCCCcEEEEEeCCCCcc-eeeeeecCcccEEEEEEeecCCCEEEE
Q 010296 411 LNPGSYHSSSAYSWVSSVTVCGG-----SDLAASGAGNGSVRLWAIESETKD-IQPLYNLPLVGFVNSLAFAKSGQFLIA 484 (513)
Q Consensus 411 ~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~g~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~ 484 (513)
+. ...+...++.++. ...+++-.. ..+.|-.++....+ .-....+....+|.+++|++++..+++
T Consensus 373 ~~--------~~~~~~~v~~s~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 373 YE--------IYDFAWDVSRSPGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred EE--------EEEEEEEEEecCCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence 00 0111222222221 112222211 24555555443111 111233335688999999999987777
Q ss_pred EecCCCcccccccC
Q 010296 485 GVGQEPRLGRWGHL 498 (513)
Q Consensus 485 ~~~~dg~v~~W~~~ 498 (513)
- ..||.|.+|...
T Consensus 444 l-~~d~~l~~~~~~ 456 (928)
T PF04762_consen 444 L-TSDGSLSIYEWD 456 (928)
T ss_pred E-ECCCCEEEEEec
Confidence 6 789999998743
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=9e-10 Score=101.40 Aligned_cols=271 Identities=13% Similarity=0.107 Sum_probs=173.6
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEE-----eC-----CCcEEEE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSG-----SF-----DRTVKIW 289 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~iw 289 (513)
..++...+++++|++++.+. +..+.|++..++..+.+.... .+.++.|+|-+.+|.+- .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34478889999999888776 678999999888655444423 78999999999998762 12 2357799
Q ss_pred eCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe---EE-----EE
Q 010296 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE---FL-----SG 361 (513)
Q Consensus 290 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---~~-----~~ 361 (513)
++.++.....+......-++..|+.+..+++--..+.+++|++..........+...+..+.++|.+. ++ ..
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 99996555444433222368889988887776677889999998877666677788899999998853 22 34
Q ss_pred eCCCCEEEEecCCCCeeEEeecCCCcccCC--CCcccCc-Ccccccc--------CCCCC--CCC------CCcCCCCCc
Q 010296 362 SDDGSIELWSLLRKKPVYIVKNAHPLLDGL--KNFEQDE-GKISNGH--------SENGN--LNP------GSYHSSSAY 422 (513)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~i~~~~--------~~~~~--~~~------~~~~~~~~~ 422 (513)
+.-+.|+||.+.-......+....-....- ..+...+ +.+.+.. +.-|. +.. .........
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 566789999876322111111000000000 0000000 0110000 00000 000 001113446
Q ss_pred ceEEEEEEecCCCEEEE--ecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecC--CCcccccccC
Q 010296 423 SWVSSVTVCGGSDLAAS--GAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQ--EPRLGRWGHL 498 (513)
Q Consensus 423 ~~i~~~~~s~~~~~l~~--g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~--dg~v~~W~~~ 498 (513)
++|.++.|+|+++-+++ |-.-..+.|||++.. ++..+ ..++-+++-|+|.|++|+.++-. .|.|-+||+.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 78999999999976654 445678999998765 33333 46788999999999998877322 3899999987
Q ss_pred C
Q 010296 499 P 499 (513)
Q Consensus 499 ~ 499 (513)
.
T Consensus 345 n 345 (566)
T KOG2315|consen 345 N 345 (566)
T ss_pred c
Confidence 6
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=3.2e-09 Score=101.51 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=156.9
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
++..++.++.++.|..+|..+++.+..... ...+.+.... .+..++.++.+|.|+.||.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--------------------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~ 162 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL--------------------SSEVLSPPLV-ANGLVVVRTNDGRLTALDA 162 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc--------------------CceeecCCEE-ECCEEEEECCCCeEEEEEc
Confidence 466788888999999999999987654310 1111111111 2456777778999999999
Q ss_pred CCcceeeeccCcCCCe-----EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC----C---eEEEE---eeC
Q 010296 250 RIQEHIQAFPGHRGPV-----SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS----E---VLTID---CLR 314 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~---v~~~~---~~~ 314 (513)
.+++.+..+......+ .+..+. +..++.+..++.+..+|+.+++.+........ . +..+. ...
T Consensus 163 ~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~ 240 (377)
T TIGR03300 163 ATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD 240 (377)
T ss_pred CCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE
Confidence 9998877665332211 111222 24677888889999999999987654321100 0 00111 112
Q ss_pred CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296 315 KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF 394 (513)
Q Consensus 315 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
++.+++++.++.++.||..++......... ....... .++.+++++.+|.|..+|..+++.+........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~-------- 310 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SYQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKY-------- 310 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC-CccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccC--------
Confidence 567888889999999999888766433221 1112222 356778888999999999999987655421100
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLA 474 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~ 474 (513)
. ...+... .+.+|++++.+|.|+++|..+++ .+..+.. +...+..--
T Consensus 311 ------------------------~----~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~-~~~~~~~--~~~~~~~sp 357 (377)
T TIGR03300 311 ------------------------R----QLTAPAV--VGGYLVVGDFEGYLHWLSREDGS-FVARLKT--DGSGIASPP 357 (377)
T ss_pred ------------------------C----ccccCEE--ECCEEEEEeCCCEEEEEECCCCC-EEEEEEc--CCCccccCC
Confidence 0 0111122 35688999999999999998872 2222221 222222222
Q ss_pred eecCCCEEEEEecCCCccccc
Q 010296 475 FAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 475 ~sp~~~~l~~~~~~dg~v~~W 495 (513)
...++ .|+++ +.||.|..|
T Consensus 358 ~~~~~-~l~v~-~~dG~l~~~ 376 (377)
T TIGR03300 358 VVVGD-GLLVQ-TRDGDLYAF 376 (377)
T ss_pred EEECC-EEEEE-eCCceEEEe
Confidence 22344 46666 788888654
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=8.6e-09 Score=98.60 Aligned_cols=211 Identities=13% Similarity=0.130 Sum_probs=147.9
Q ss_pred CCCcccchhhhhccCCCeEEEEECCC------------CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCC
Q 010296 145 KPEATDEFRVLLKHRQSVTAVALSED------------DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP 212 (513)
Q Consensus 145 ~~~~~~~~~~~~~h~~~V~~~~~s~~------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (513)
+....+.++.+..|...|+.+.|.|- .-.||++...|.|.+||+..+..+..+
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l--------------- 105 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL--------------- 105 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh---------------
Confidence 34556777888899999999999873 125677788899999999887766543
Q ss_pred CCCCCCCcccEEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEE
Q 010296 213 QGRATKQSKHILALAVSS---DG-RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVK 287 (513)
Q Consensus 213 ~~~~~~~~~~v~~~~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 287 (513)
..|..++..++|-+ +. ..|++-....+|.+|+..+|+....+........|+.+.| +.+.+..-+..|.|.
T Consensus 106 ----~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl 181 (1062)
T KOG1912|consen 106 ----SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVL 181 (1062)
T ss_pred ----cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEE
Confidence 56788899999977 33 4566666678999999999999888776667778888888 456666666677777
Q ss_pred EEeCCC-------CceeEEeecccC----------------C---------eEEEEeeCCC-eEEEEeCCCcEEEEecCC
Q 010296 288 IWNAED-------RAYISTLFGHQS----------------E---------VLTIDCLRKE-RVLTVGRDRSMQLWKVPE 334 (513)
Q Consensus 288 iwd~~~-------~~~~~~~~~~~~----------------~---------v~~~~~~~~~-~~~~~~~d~~i~iwd~~~ 334 (513)
+.+.-. ++..+.-..|.. . ...++|+|.- .++.......+.++|+.-
T Consensus 182 ~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~ 261 (1062)
T KOG1912|consen 182 SCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY 261 (1062)
T ss_pred EEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh
Confidence 665421 122221111111 0 1123456643 455566677899999987
Q ss_pred Ceee-EEecCCCCeeEEEeecCCe---EEEEeCCCCEEEEecCC
Q 010296 335 ESRL-VFRAPASSLECCCFISNDE---FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 335 ~~~~-~~~~~~~~v~~~~~~~~~~---~~~~~~dg~i~iwd~~~ 374 (513)
...+ ......+.+.-+.+.|+.+ +++...||.+.||-.+.
T Consensus 262 ~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 262 ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 7766 3344455566677778764 77999999999997665
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=9e-11 Score=110.71 Aligned_cols=240 Identities=13% Similarity=0.171 Sum_probs=166.2
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc---------------eeeeccCcCCCeEEEEEecCCCeEEEEeCC
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE---------------HIQAFPGHRGPVSCLTFRQGTSELFSGSFD 283 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 283 (513)
......|++|+....++++|+.||.++|..+.+.. .-+++.+|.+.|.-+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568899999999999999999999999876432 125678999999999999998899999999
Q ss_pred CcEEEEeCCCCceeEEe--ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE
Q 010296 284 RTVKIWNAEDRAYISTL--FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL 359 (513)
Q Consensus 284 g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~ 359 (513)
|.|.+|-+-.+.....+ ....+.|.+++|+.+| ++..+-.||.|.+=.+..+...-..........+.|+++.. ++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999999887654333 2245678999999987 56678889999888877766553333334455788999986 55
Q ss_pred EEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE--------e
Q 010296 360 SGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV--------C 431 (513)
Q Consensus 360 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------s 431 (513)
.+-.+|.+++||....-.+ .+..... ......+ ......|..+.| -
T Consensus 173 f~~ange~hlydnqgnF~~-Kl~~~c~-Vn~tg~~------------------------s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFER-KLEKDCE-VNGTGIF------------------------SNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred hhhcCCcEEEecccccHHH-hhhhceE-Eeeeeee------------------------cCCCccccceeeccCccccCC
Confidence 7777899999997543111 1100000 0000000 000111333333 2
Q ss_pred cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCC
Q 010296 432 GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQE 489 (513)
Q Consensus 432 ~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~d 489 (513)
|+...|+++-.+|.+.|..-.+...++. .. ..-.|..+.|+++|.+|+++ |.+
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~~Pvv--~d--tgm~~vgakWnh~G~vLAvc-G~~ 279 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDPEPVV--VD--TGMKIVGAKWNHNGAVLAVC-GND 279 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCCCCeE--Ee--cccEeecceecCCCcEEEEc-cCc
Confidence 5778999999999999887666533322 22 23568899999999999998 544
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.5e-11 Score=111.02 Aligned_cols=289 Identities=18% Similarity=0.212 Sum_probs=186.1
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
+..+.||+..|..++--.+.+-+++++.|.+|++|.+....-. .+....+.++..|..+|..+.|-.+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~------------~~tsaCQfTY~aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE------------IGTSACQFTYQAHKKPIHDIGFLAD 795 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc------------cccceeeeEhhhccCcccceeeeec
Confidence 4457799999999988888899999999999999998743211 1111223356889999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccC--cCCCeEEEEEecC--CCeEEE-EeCCCcEEEEeCCCCceeEEee-----
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPG--HRGPVSCLTFRQG--TSELFS-GSFDRTVKIWNAEDRAYISTLF----- 301 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~-~~~dg~i~iwd~~~~~~~~~~~----- 301 (513)
.++++++ ||.|.+||.--++++..+.. ..+.+..+..-++ ...+++ ++...+|+++|.+....+..++
T Consensus 796 lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 796 LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred cceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 8888776 78899999887776653321 2233333433333 334444 4778999999999887665543
Q ss_pred cccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeE-EecCCCCeeEEEeecCCeEEEEeCCCCEEE-EecCCCCee
Q 010296 302 GHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLV-FRAPASSLECCCFISNDEFLSGSDDGSIEL-WSLLRKKPV 378 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~dg~i~i-wd~~~~~~~ 378 (513)
+....+.+++..+.|. ++++-..|.|.+.|.+++..+. .+........++...+..++....|.++.+ |....+...
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeee
Confidence 3345678999988775 5567789999999999998663 333333333444434444667777888888 887776655
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC---
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET--- 455 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~--- 455 (513)
...+..... .| ...+ -|.-|+++...+.+.||--....
T Consensus 954 ~q~kpppep--------------------------------ah--flqs-----vgpSLV~a~~Gn~lgVYad~a~~ha~ 994 (1034)
T KOG4190|consen 954 LQDKPPPEP--------------------------------AH--FLQS-----VGPSLVTAQNGNILGVYADSAELHAE 994 (1034)
T ss_pred eccCCCCcc--------------------------------hh--hhhc-----cCceeEEeccCcEEEEEecchhhhhh
Confidence 544322110 00 0111 13346666655666776532210
Q ss_pred cceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296 456 KDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGR 494 (513)
Q Consensus 456 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~ 494 (513)
..+..+..-...+..++++.-|-+.-+++| ...|.|.+
T Consensus 995 stitKiR~d~f~G~lTala~LPLN~afLaG-ne~G~IaL 1032 (1034)
T KOG4190|consen 995 STITKIRPDEFPGTLTALAPLPLNCAFLAG-NEHGAIAL 1032 (1034)
T ss_pred hhhccccccccCCccceeeeccccchhhcc-CCCCceee
Confidence 111222222346778888888877766666 67777754
No 279
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=8.3e-10 Score=94.13 Aligned_cols=258 Identities=16% Similarity=0.273 Sum_probs=167.1
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc-----eeeeccCcC------------CCeEEEEEecCC--CeEEE
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQE-----HIQAFPGHR------------GPVSCLTFRQGT--SELFS 279 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 279 (513)
....|+++.|...|.||++|...|.|.+|.-.... ....|++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34569999999999999999999999999754332 122344443 357888887654 35777
Q ss_pred EeCCCcEEEEeCCCCc-------------------e------------------e-----EEe-ecccCCeEEEEeeCCC
Q 010296 280 GSFDRTVKIWNAEDRA-------------------Y------------------I-----STL-FGHQSEVLTIDCLRKE 316 (513)
Q Consensus 280 ~~~dg~i~iwd~~~~~-------------------~------------------~-----~~~-~~~~~~v~~~~~~~~~ 316 (513)
.+.|.+|++|.+.... + + +.. ..|.-.+.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999874320 0 0 000 2466678889998888
Q ss_pred eEEEEeCCCcEEEEecCCCee----eEEecCC-----CCeeEEEeecCC--eEEEEeCCCCEEEEecCCCCeeEEeecCC
Q 010296 317 RVLTVGRDRSMQLWKVPEESR----LVFRAPA-----SSLECCCFISND--EFLSGSDDGSIELWSLLRKKPVYIVKNAH 385 (513)
Q Consensus 317 ~~~~~~~d~~i~iwd~~~~~~----~~~~~~~-----~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (513)
..+..+.+-.|.+|++.-... +-...+. .-|++..|+|.. .|...++.|.|++-|++.....-.-....
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 778778888999999864321 1222222 246778888865 36788889999999998543211100000
Q ss_pred CcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecC
Q 010296 386 PLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLP 465 (513)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~ 465 (513)
... .. .+....+ ......|..+.|+++|+++++-+.- +|+|||++....++.++....
T Consensus 265 e~~-----~D--------------~v~~~ff--~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 265 ELT-----ID--------------GVDVDFF--EEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhc-----cC--------------cccchhH--HHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHH
Confidence 000 00 0000000 1112338899999999999988765 899999998866666553211
Q ss_pred ----------cccEE---EEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 466 ----------LVGFV---NSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 466 ----------~~~~v---~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
....| .-+.||.|.+.+++| +......++-+..
T Consensus 323 ~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg-sy~NNfgiyp~~s 368 (460)
T COG5170 323 DLMDELNDVYENDAIFDKFEISFSGDDKHVLSG-SYSNNFGIYPTDS 368 (460)
T ss_pred HHHHHHHhhhhccceeeeEEEEecCCccccccc-ccccceeeecccc
Confidence 01223 347889998988888 7777777776443
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1.3e-10 Score=110.07 Aligned_cols=283 Identities=14% Similarity=0.205 Sum_probs=183.6
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC--CEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG--RYLA 236 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~ 236 (513)
.+++.++..+|.|+-+|+++.-|.+ +-|+...-....+ ......-.|-.+.|+|.. .+-+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~-----------------l~h~tpw~vad~qws~h~a~~~wi 85 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRW-----------------LHHITPWQVADVQWSPHPAKPYWI 85 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCcee-----------------eeccCcchhcceecccCCCCceeE
Confidence 5788999999999999999987754 4466543322111 011112236667787743 2333
Q ss_pred EEeCCCcEEEEeCCC---cceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEEEE
Q 010296 237 SGGLDRHIHLWDTRI---QEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLTID 311 (513)
Q Consensus 237 s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~ 311 (513)
+......-.+|++.. ...-..+.+|...|+.+-|+|+.. .|++++.|-.|..||+++.. ++..+..-......+.
T Consensus 86 Vsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 86 VSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVK 165 (1081)
T ss_pred EecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceee
Confidence 333345566898753 334456778999999999998765 57899999999999999854 4555555566677888
Q ss_pred eeC-CCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCCC--eeEEeecC
Q 010296 312 CLR-KERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRKK--PVYIVKNA 384 (513)
Q Consensus 312 ~~~-~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~~--~~~~~~~~ 384 (513)
|+- ++.+++.+..+.|.+||++.+... ....+...+..+.|..-- .+++.+.||+|+.|+..... .-+++...
T Consensus 166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred ecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc
Confidence 876 567788888999999999877543 556677778888776543 48899999999999987543 22222211
Q ss_pred CCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec-----------CCCEEEEecCCCcEEEEEeCC
Q 010296 385 HPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG-----------GSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----------~~~~l~~g~~dg~v~vwd~~~ 453 (513)
.+ |..-.+-| .+..+-.--.++....|++.+
T Consensus 246 ~p--------------------------------------iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 246 FP--------------------------------------IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred Cc--------------------------------------ceeccccccCceeEeccccCCeeeeeccccchhhhhcccc
Confidence 11 22223333 222222222233445566666
Q ss_pred CCcceeeeeecCcccEEEEEEeecCC---------CEEEEEecCCCcccccccCC
Q 010296 454 ETKDIQPLYNLPLVGFVNSLAFAKSG---------QFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 454 ~~~~~~~~~~~~~~~~v~~v~~sp~~---------~~l~~~~~~dg~v~~W~~~~ 499 (513)
..+++..+.+ |...|....|-..+ .+-+++.+.|..|++|-+..
T Consensus 288 ~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 288 LNTPVHTFVG--HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCcceeeecC--cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 6555665554 77777666665432 24445559999999996543
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=5.4e-09 Score=87.47 Aligned_cols=235 Identities=11% Similarity=0.017 Sum_probs=151.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEE-ecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 231 DGRYLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTF-RQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
...+||.|+..|.+.+|...+.+... ....|...|+-+.= ......+..++.|.++++.++..+.....+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 34589999999999999988665432 22334333322211 11223477788888998888866544333322223378
Q ss_pred EEEeeCCCeEE-EEeCCCcEEEEecCCCeee----EEecCCCCeeEEEeecCC-eEEEEeCCCCEEEEecCCCCeeEEee
Q 010296 309 TIDCLRKERVL-TVGRDRSMQLWKVPEESRL----VFRAPASSLECCCFISND-EFLSGSDDGSIELWSLLRKKPVYIVK 382 (513)
Q Consensus 309 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~-~~~~~~~dg~i~iwd~~~~~~~~~~~ 382 (513)
++++++++++. +.+....|..|.+...... ........-.+..|+... .|+++..||++.|||++.........
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 89999999776 6778889999998765443 222334456677888776 49999999999999998865443332
Q ss_pred cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC--EEEEecCCCcEEEEEeCCCCcceee
Q 010296 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD--LAASGAGNGSVRLWAIESETKDIQP 460 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~g~~dg~v~vwd~~~~~~~~~~ 460 (513)
.... ..|.+.+..+.|++.|. +|+..-.-+.+.|.|+++. ...+.
T Consensus 243 sstr--------------------------------p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~-~~~q~ 289 (344)
T KOG4532|consen 243 SSTR--------------------------------PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY-VNHQV 289 (344)
T ss_pred cccC--------------------------------CCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC-ceeeE
Confidence 2111 45777899999998763 5666656678999999987 33333
Q ss_pred eeecC-----c-ccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 461 LYNLP-----L-VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 461 ~~~~~-----~-~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
+...+ | ...|....|+.++..+.+. ..+ .+.=|+....
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~-~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVK-NEL-QGAEYNILSR 333 (344)
T ss_pred EecCccccccccccccccccccCCCcccccc-cch-hhheeecccc
Confidence 32221 2 2337777888887777666 333 3444555443
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=5.7e-10 Score=95.12 Aligned_cols=268 Identities=16% Similarity=0.254 Sum_probs=167.1
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC--CEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG--RYL 235 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l 235 (513)
...|+++.|...|.||+||...|.|.+|.-..... ...++.. ++++...---.....-...|..|.|..++ ..+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~te---FQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTE---FQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhh---hcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 56799999999999999999999999998654431 1111100 01110000000001123458888887654 356
Q ss_pred EEEeCCCcEEEEeCCCcc-------------------e------------------e-----eec-cCcCCCeEEEEEec
Q 010296 236 ASGGLDRHIHLWDTRIQE-------------------H------------------I-----QAF-PGHRGPVSCLTFRQ 272 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~-------------------~------------------~-----~~~-~~~~~~v~~~~~~~ 272 (513)
+..+.|.+|++|.+.... + + +.+ ..|.-.|+++.|..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 667779999999865321 0 0 001 24667788999998
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCce---eEEeeccc-----CCeEEEEeeCC--CeEEEEeCCCcEEEEecCCCeee----
Q 010296 273 GTSELFSGSFDRTVKIWNAEDRAY---ISTLFGHQ-----SEVLTIDCLRK--ERVLTVGRDRSMQLWKVPEESRL---- 338 (513)
Q Consensus 273 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~---- 338 (513)
+...++++ .|=.|.+|++.-... +..+++|. .-|++..|+|. ..+...++.|.|++-|++.....
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 87777766 467899999864322 22233332 34778889985 45667888999999999843211
Q ss_pred -E------------EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccc
Q 010296 339 -V------------FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNG 404 (513)
Q Consensus 339 -~------------~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 404 (513)
. +......|..+.|+++|+++.+-.--+|+|||++.. .|+.++..+......+...-..+..
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai---- 337 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI---- 337 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccce----
Confidence 1 122345678899999999887777889999999864 5777765433221111111000000
Q ss_pred cCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 405 HSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
-.-..+.||.+.+.+++|+..+..-+|-+.
T Consensus 338 ------------------fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 ------------------FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ------------------eeeEEEEecCCcccccccccccceeeeccc
Confidence 003457788888888888887777777643
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=9.5e-09 Score=92.81 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=115.2
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCc-eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDG-SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
.-.+|.+.|.-..+..++.-++.|..|| .+-||+..+++.... ...-+.|.++..+|+|
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~--------------------e~~lg~I~av~vs~dG 413 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI--------------------EKDLGNIEAVKVSPDG 413 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe--------------------eCCccceEEEEEcCCC
Confidence 3347889999999999999999999999 899999998886542 3456679999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC----CcEEEEeCCCCceeEEeecccCCeE
Q 010296 233 RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD----RTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
++++.+.....|.+.|+.++.....-+...+-|+.+.|+|+++++|-+--+ ..|+++|+.+++...... ....=.
T Consensus 414 K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Df 492 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDF 492 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccccc
Confidence 999999999999999999998876666677889999999999999966544 579999999887654332 333334
Q ss_pred EEEeeCCCe
Q 010296 309 TIDCLRKER 317 (513)
Q Consensus 309 ~~~~~~~~~ 317 (513)
+-+|.|+++
T Consensus 493 sPaFD~d~r 501 (668)
T COG4946 493 SPAFDPDGR 501 (668)
T ss_pred CcccCCCCc
Confidence 556667764
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.17 E-value=7.3e-08 Score=102.33 Aligned_cols=260 Identities=11% Similarity=0.082 Sum_probs=160.1
Q ss_pred EEEEECCC-CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe-C
Q 010296 163 TAVALSED-DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG-L 240 (513)
Q Consensus 163 ~~~~~s~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~ 240 (513)
..+++++. +.++++-+..+.|++||.... .+..+..... .+...- .....+-.....|++.++++.|+++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~----~G~~dG-~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGE----EGLRDG-SFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCC----cCCCCC-chhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46788875 556667777899999998643 3322211000 000000 00112233467899999888766654 4
Q ss_pred CCcEEEEeCCCcceeeeccCc-----------------CCCeEEEEEec-CCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 241 DRHIHLWDTRIQEHIQAFPGH-----------------RGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 241 dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
.+.|+++|+.++.. .++.+- -...+.++|+| ++..+++.+.++.|++||..++... .+.+
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 57899999877653 222110 12346799999 4555667777899999999776532 2211
Q ss_pred c---------------cCCeEEEEeeCCCe-EE-EEeCCCcEEEEecCCCeeeEEec----------------------C
Q 010296 303 H---------------QSEVLTIDCLRKER-VL-TVGRDRSMQLWKVPEESRLVFRA----------------------P 343 (513)
Q Consensus 303 ~---------------~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~~----------------------~ 343 (513)
. -.....|+++|++. ++ +-..++.|++||+.++......+ .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 1 12346789999874 55 44567999999998654322110 0
Q ss_pred CCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296 344 ASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY 422 (513)
Q Consensus 344 ~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 422 (513)
......+++.++|. +++-..++.|++||..++............ +. .+.. .....
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G------~~------------dG~~------~~a~l 858 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG------FK------------DGKA------LKAQL 858 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC------CC------------CCcc------ccccc
Confidence 11345788889886 567778999999999887655433211100 00 0000 01112
Q ss_pred ceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 423 SWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 423 ~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.....|+++++|+++++-+.++.|++||+.++
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 23788999999999999999999999999886
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=1.2e-08 Score=85.44 Aligned_cols=243 Identities=9% Similarity=0.018 Sum_probs=158.9
Q ss_pred EEEEECC-----CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC-CCEEE
Q 010296 163 TAVALSE-----DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD-GRYLA 236 (513)
Q Consensus 163 ~~~~~s~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~ 236 (513)
+.|.|-| ...+||.||.-|.+.+|...+.+....+ ...|...|+-+.=..+ .-.+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~------------------cd~snn~v~~~~r~cd~~~~~~ 132 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ------------------CDVSNNDVTLVKRYCDLKFPLN 132 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceee------------------ecccccchhhhhhhccccccee
Confidence 4456666 3468999999999999999876644332 1122222221111111 22466
Q ss_pred EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-ee-E-EeecccCCeEEEEee
Q 010296 237 SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-YI-S-TLFGHQSEVLTIDCL 313 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~-~-~~~~~~~~v~~~~~~ 313 (513)
.++.|.++++.++..+.....+.-..-.+.+++++++++++++.+....|..|.+.... .+ . ........-.+..|+
T Consensus 133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS 212 (344)
T ss_pred eccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec
Confidence 67778888888876443322221111238899999999999999999999999987532 22 2 233445556788888
Q ss_pred CCC-eEEEEeCCCcEEEEecCCCeee------EEecCCCCeeEEEeecCCe---EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 314 RKE-RVLTVGRDRSMQLWKVPEESRL------VFRAPASSLECCCFISNDE---FLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 314 ~~~-~~~~~~~d~~i~iwd~~~~~~~------~~~~~~~~v~~~~~~~~~~---~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
... .|+++..||++.|||++..... ....|.+.+..+.|++.|. |+..-.-+.+.+.|+++++....+..
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 754 7779999999999999875433 3345778899999998774 44555678899999999987776653
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc-ceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY-SWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
..... ..|. ..|....|+.++.-+.+.+.+ .+.=|++.+.
T Consensus 293 ~~d~~------------------------------~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 293 PDDVE------------------------------RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred Ccccc------------------------------ccccccccccccccCCCcccccccch-hhheeecccc
Confidence 32210 1111 227777788777766666655 4566666554
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.15 E-value=3.3e-08 Score=84.17 Aligned_cols=218 Identities=15% Similarity=0.189 Sum_probs=131.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCc--ceeee---ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296 226 LAVSSDGRYLASGGLDRHIHLWDTRIQ--EHIQA---FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 226 ~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
++.+.+|++||+.- |..|.|-..+.. .++.. -+.....=.-++|+||+..||.+...|+|+++|+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 56778898888765 667777655432 11111 1222234567999999999999999999999999653 33333
Q ss_pred ec-------ccCCeEEEEeeCC-------CeEEEEeCCCcEEEEecCCCe--e----eE--Ee-cCCCCeeEEEeecCCe
Q 010296 301 FG-------HQSEVLTIDCLRK-------ERVLTVGRDRSMQLWKVPEES--R----LV--FR-APASSLECCCFISNDE 357 (513)
Q Consensus 301 ~~-------~~~~v~~~~~~~~-------~~~~~~~~d~~i~iwd~~~~~--~----~~--~~-~~~~~v~~~~~~~~~~ 357 (513)
.. ....|..+.|.+- ..|++....|.++-|-+..+. . .. +. .....|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 1235666666542 257788889888888764321 1 11 22 2356899999999875
Q ss_pred -EEEE-eCCC----------CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCc-CCCCCcce
Q 010296 358 -FLSG-SDDG----------SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSY-HSSSAYSW 424 (513)
Q Consensus 358 -~~~~-~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~ 424 (513)
|++| +... -+..|.+-++.|-.............. ....+.. . ......+ ........
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~--~~~~~~~---~----~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS--SKRRGLL---R----IPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc--cccccee---e----ccceeeeeccccCCCc
Confidence 3343 3322 366777777666555432211110000 0000000 0 0000000 00223456
Q ss_pred EEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 425 VSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 425 i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
|..|..||+|.+||+...+|.|.+|++.+-
T Consensus 232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 999999999999999999999999999876
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=6.8e-08 Score=92.27 Aligned_cols=210 Identities=12% Similarity=0.050 Sum_probs=126.4
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-EEEEeC---CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-LFSGSF---DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER 317 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 317 (513)
..|.+-|..... .+.+... +.+....|+|+|+. ++..+. ...|+++|+.+++..... ...+......|+|+|.
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 355555554333 2323323 37788999999985 554333 356999999888654433 3555566788999984
Q ss_pred -EE-EEeC--CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCC--CEEEEecCCCCeeEEeecCCCccc
Q 010296 318 -VL-TVGR--DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDG--SIELWSLLRKKPVYIVKNAHPLLD 389 (513)
Q Consensus 318 -~~-~~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 389 (513)
++ +.+. +..|+++++.++....+...........|+|+|. ++ +....+ .|.++++.+++.......
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~------ 319 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH------ 319 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC------
Confidence 44 3333 3568888887776554444333334567999995 44 333333 577777777655332210
Q ss_pred CCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---------CcEEEEEeCCCCcceee
Q 010296 390 GLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---------GSVRLWAIESETKDIQP 460 (513)
Q Consensus 390 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---------g~v~vwd~~~~~~~~~~ 460 (513)
. .....|||+|++|+..+.. ..|.+.++.++. .+.
T Consensus 320 ------------------------------g----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~ 363 (419)
T PRK04043 320 ------------------------------G----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRR 363 (419)
T ss_pred ------------------------------C----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEE
Confidence 0 0123799999988766543 367888887762 333
Q ss_pred eeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 461 LYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 461 ~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
+... +......|+|||++|+......+.-.+|-+.-
T Consensus 364 LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 364 LTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred CCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 3321 22335789999999887755555544554433
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.08 E-value=2.2e-07 Score=81.83 Aligned_cols=205 Identities=17% Similarity=0.167 Sum_probs=143.8
Q ss_pred CeEEEEECC-CCCeEEEEeCCce-EEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 161 SVTAVALSE-DDSKGFSASKDGS-ILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 161 ~V~~~~~s~-~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
....++.+| ....++.+-.-|+ ..+||..++.....+++. +...+.+| -.||++|++|++.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----------~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----------PGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----------CCCEEecC------EEEcCCCCEEEEe
Confidence 345678888 4555667766665 778999999988766332 22234555 5899999999986
Q ss_pred e-----CCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCCCeEEEEe------------------CCCcEEEEeCCCC
Q 010296 239 G-----LDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGS------------------FDRTVKIWNAEDR 294 (513)
Q Consensus 239 ~-----~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~ 294 (513)
- ..|.|-|||.. +.+.+..+..|.-.-..+.+.|+++.|+++. .+-++...|..++
T Consensus 69 End~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 3 35899999998 6677888888877778899999998877653 2345666777888
Q ss_pred ceeEE--e--ecccCCeEEEEeeCCCeEEEEeCC-C-------cEEEEecCCCeeeEE-------ecCCCCeeEEEeecC
Q 010296 295 AYIST--L--FGHQSEVLTIDCLRKERVLTVGRD-R-------SMQLWKVPEESRLVF-------RAPASSLECCCFISN 355 (513)
Q Consensus 295 ~~~~~--~--~~~~~~v~~~~~~~~~~~~~~~~d-~-------~i~iwd~~~~~~~~~-------~~~~~~v~~~~~~~~ 355 (513)
+.+.+ + ..|...|..+++.++|.++.+... + -|.++..... ...+ ......+-+++++++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCC
Confidence 87766 3 237778999999999988776531 1 1333332221 1111 223467889999999
Q ss_pred Ce-E-EEEeCCCCEEEEecCCCCeeEEeec
Q 010296 356 DE-F-LSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 356 ~~-~-~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
+. + +++=..+.+.+||..+++.+.....
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence 85 4 3555678999999999998876653
No 289
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.1e-10 Score=112.65 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=144.7
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
...+++..|+..-+|++|+-+.++|+.|+..|.|++|++.+|..... ...|..+|+.+.-+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPS 1152 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------------------cccccccccccccc
Confidence 45667888999999999999999999999999999999999987663 47899999999999
Q ss_pred CCCCEEEEEeCC--CcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ec---
Q 010296 230 SDGRYLASGGLD--RHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FG--- 302 (513)
Q Consensus 230 ~~~~~l~s~~~d--g~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~--- 302 (513)
.+|..+++.+.. .-..+|++.+ +...++|. .-.++.|+.....-+.|+....+.+||+.++..+.++ .+
T Consensus 1153 ~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred CCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh
Confidence 999987776543 3577999764 34445554 3457888876555555555567899999998876653 21
Q ss_pred ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEe
Q 010296 303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
....-++..|+|...++.- || .+||++....+...........-.|+|.|. ++..+ .|||+++.+.++..
T Consensus 1229 ~~y~~n~a~FsP~D~LIln--dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLILN--DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred hhhhccccccCCCcceEee--Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence 2223367789998777643 23 579998776553222222222335888886 55544 58999998877765
Q ss_pred e
Q 010296 382 K 382 (513)
Q Consensus 382 ~ 382 (513)
.
T Consensus 1300 P 1300 (1516)
T KOG1832|consen 1300 P 1300 (1516)
T ss_pred c
Confidence 4
No 290
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.06 E-value=3.6e-07 Score=76.59 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=119.1
Q ss_pred CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR 250 (513)
Q Consensus 171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 250 (513)
..+++.|+..+.+.--|..+|...... --...|-+-+.- -|.+++.|+..|.+++.+.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--------------------ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~ 81 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--------------------ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVK 81 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--------------------hhCceeeeeeEE-ECCEEEEEEccCcEEEEEec
Confidence 467778899999999999988876532 011223332222 47789999999999999999
Q ss_pred CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC-CCeEEEEeCCCcEEE
Q 010296 251 IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR-KERVLTVGRDRSMQL 329 (513)
Q Consensus 251 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i 329 (513)
+|..+..+.....-=......+++..+..++.|++.+..|.++..++...+...+...+-+..+ ++.++++...|.+.-
T Consensus 82 tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 82 TGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred chhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence 9987777664332222345577889999999999999999999999988764444444444555 567776666666655
Q ss_pred EecCCCeeeEEecC--CCCe----eEEEe-----ecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296 330 WKVPEESRLVFRAP--ASSL----ECCCF-----ISNDEFLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 330 wd~~~~~~~~~~~~--~~~v----~~~~~-----~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
-.........+..+ ..++ .++.- .-+|.+.+-+..| -.||..+++.++..-
T Consensus 162 vt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG-~qvwr~~t~GpIf~~ 223 (354)
T KOG4649|consen 162 VTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG-RQVWRPATKGPIFME 223 (354)
T ss_pred EccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC-cEEEeecCCCceecc
Confidence 55444322211111 1111 11110 1234455555555 457777777665543
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=6.1e-07 Score=80.13 Aligned_cols=217 Identities=12% Similarity=0.078 Sum_probs=141.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEe-cCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 225 ALAVSS-DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR-QGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 225 ~~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
++.|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. ++ ..|+.+... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578888 67777777778999999998876543 22122 7778888 55 455555554 456669988865443332
Q ss_pred -----ccCCeEEEEeeCCCeEEEEeCC---------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-E-EEEeCCCC
Q 010296 303 -----HQSEVLTIDCLRKERVLTVGRD---------RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-F-LSGSDDGS 366 (513)
Q Consensus 303 -----~~~~v~~~~~~~~~~~~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~dg~ 366 (513)
.....+.+++.++|.++++... +.|..++.. ++.............++|+|++. | ++-+..+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 2346788999999987765432 557777777 45444444456678999999995 3 46677888
Q ss_pred EEEEecCCCCe-eE---EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecC
Q 010296 367 IELWSLLRKKP-VY---IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAG 442 (513)
Q Consensus 367 i~iwd~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~ 442 (513)
|..|++..... +. .+... ....+..-.+++..+|++.++...
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDF----------------------------------PGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-----------------------------------SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred eEEEeccccccceeeeeeEEEc----------------------------------CCCCcCCCcceEcCCCCEEEEEcC
Confidence 99998864322 11 11100 111133778999999998888778
Q ss_pred CCcEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEE
Q 010296 443 NGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAG 485 (513)
Q Consensus 443 dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~ 485 (513)
.+.|.+++.. + +.+..+. .+ ...+++++|. |+...|+++
T Consensus 204 ~~~I~~~~p~-G-~~~~~i~-~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 204 GGRIVVFDPD-G-KLLREIE-LP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TTEEEEEETT-S-CEEEEEE--S-SSSEEEEEEESTTSSEEEEE
T ss_pred CCEEEEECCC-c-cEEEEEc-CC-CCCEEEEEEECCCCCEEEEE
Confidence 8899999977 4 3344333 33 3478999995 777777766
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=2.8e-09 Score=94.31 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=110.3
Q ss_pred CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeC
Q 010296 161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGL 240 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 240 (513)
.+..+..+|.+++||++..+....++++........++ ... ....-...+..+..+.........+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~------~~~-------~v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL------DVS-------CVPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceee------eEe-------ecccCcceeeeeeccceEEEEeecCC
Confidence 34555667778888877777776666665443211110 000 01111223444443333323333444
Q ss_pred CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccCCeEEEEeeCCCeEE
Q 010296 241 DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQSEVLTIDCLRKERVL 319 (513)
Q Consensus 241 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 319 (513)
...+.+|....+.+ ..+-+|-..++.++|+||+++|+++..|..|+|-....-..+..+ .||..-|..++..++..|+
T Consensus 131 ~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~Ll 209 (390)
T KOG3914|consen 131 VYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLL 209 (390)
T ss_pred ceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceee
Confidence 55666776665443 344579999999999999999999999999999887665555544 5799999999998888889
Q ss_pred EEeCCCcEEEEecCCCeee
Q 010296 320 TVGRDRSMQLWKVPEESRL 338 (513)
Q Consensus 320 ~~~~d~~i~iwd~~~~~~~ 338 (513)
+++.|++|++||+.+++.+
T Consensus 210 S~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ecCCCCcEEEEecccCCcc
Confidence 9999999999999988766
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=6.2e-08 Score=92.90 Aligned_cols=283 Identities=12% Similarity=0.007 Sum_probs=186.5
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC------
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD------ 231 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------ 231 (513)
|...-.++.|+|.| +||-|+. ..|.|-|..+-+.+..+ ..|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-------------------e~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-------------------ELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-------------------ccCccceeEEEeccCCCchhc
Confidence 34447788999987 4555553 57888898887777654 678899999999872
Q ss_pred ------CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec---CC-CeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296 232 ------GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ---GT-SELFSGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 232 ------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
.-+||++...|.|.+||...+..+..+..|..++..++|-+ +. ..|++-....+|.+|+..+|+.+....
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 12577788889999999999999999999999999999976 33 456677777899999999999988876
Q ss_pred cccCCeEEEEeeC-CC-eEEEEeCCCcEEEEecCCC-------eeeEEe-cCCC-------------------------C
Q 010296 302 GHQSEVLTIDCLR-KE-RVLTVGRDRSMQLWKVPEE-------SRLVFR-APAS-------------------------S 346 (513)
Q Consensus 302 ~~~~~v~~~~~~~-~~-~~~~~~~d~~i~iwd~~~~-------~~~~~~-~~~~-------------------------~ 346 (513)
.......|+.+.| +. .+...+..|.+.+.+.-.. +...+. .|.. .
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 6666677788887 33 4556666777766654221 111111 1100 0
Q ss_pred eeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296 347 LECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV 425 (513)
Q Consensus 347 v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 425 (513)
...++|+|.-+ ++.......+.|+|+.-..++..+...... +
T Consensus 233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~-------------------------------------a 275 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGG-------------------------------------A 275 (1062)
T ss_pred HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCC-------------------------------------c
Confidence 11235566543 555556778999999988888877643321 3
Q ss_pred EEEEEecC--CCEEEEecCCCcEEEEEeCCCCcceee---------------eeecCcccEEEEEEeecCCCEEEEEecC
Q 010296 426 SSVTVCGG--SDLAASGAGNGSVRLWAIESETKDIQP---------------LYNLPLVGFVNSLAFAKSGQFLIAGVGQ 488 (513)
Q Consensus 426 ~~~~~s~~--~~~l~~g~~dg~v~vwd~~~~~~~~~~---------------~~~~~~~~~v~~v~~sp~~~~l~~~~~~ 488 (513)
.-+.+-|+ ...|++.-.||.+.||-.+........ +.... .-.+...+..|..+-.++-.=.
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~-~~rp~~~~~cPs~~sa~avl~s 354 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME-EFRPVIGASCPSTPSALAVLYS 354 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech-hcccceeecCCCChhhhhhhhh
Confidence 34455554 468999999999999987653211111 11000 1112233344554433333356
Q ss_pred CCcccccccCC
Q 010296 489 EPRLGRWGHLP 499 (513)
Q Consensus 489 dg~v~~W~~~~ 499 (513)
+|.+.+|.+..
T Consensus 355 ~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 355 SGDSTFWQLSN 365 (1062)
T ss_pred cchhHHHhhhc
Confidence 78899998874
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=5.8e-07 Score=79.27 Aligned_cols=227 Identities=12% Similarity=0.098 Sum_probs=140.9
Q ss_pred EEEEEEcC-CCCEEEEEeCCC-cEEEEeCCCcceeeeccCcCCCe--EEEEEecCCCeEEEEeC-----CCcEEEEeCC-
Q 010296 223 ILALAVSS-DGRYLASGGLDR-HIHLWDTRIQEHIQAFPGHRGPV--SCLTFRQGTSELFSGSF-----DRTVKIWNAE- 292 (513)
Q Consensus 223 v~~~~~s~-~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~- 292 (513)
...++.+| ....++.+-.-| ...+||..+++....+....+.- -.-+|+++|++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45688899 455566665554 47789999999887765433322 24689999999998643 5889999998
Q ss_pred CCceeEEeecccCCeEEEEeeCCC-eEEEEe------------------CCCcEEEEecCCCeeeE---E--ecCCCCee
Q 010296 293 DRAYISTLFGHQSEVLTIDCLRKE-RVLTVG------------------RDRSMQLWKVPEESRLV---F--RAPASSLE 348 (513)
Q Consensus 293 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~------------------~d~~i~iwd~~~~~~~~---~--~~~~~~v~ 348 (513)
+.+.+..+..+.-....+.+.|++ .|+++. ++.++.+.|..++..+. + ..+..++.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 667777887777777788889988 444432 12334555556665542 2 23556788
Q ss_pred EEEeecCCeEEEEeCC-CC-----EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCc
Q 010296 349 CCCFISNDEFLSGSDD-GS-----IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAY 422 (513)
Q Consensus 349 ~~~~~~~~~~~~~~~d-g~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 422 (513)
.+++.++|.++.+... |. -.+.-.+.+..+..+...... .....
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~------------------------------~~~l~ 216 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQ------------------------------WRRLN 216 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHH------------------------------HHhhC
Confidence 8888888876655432 11 011111111111111110000 02334
Q ss_pred ceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296 423 SWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 423 ~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 485 (513)
.++-+|++++++.++++.+ .-|.+.+||..++ ..+... ....+..|+-.+++ +++++
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg----~~~~~~-~l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG----RLLGSV-PLPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCC----CEeecc-ccCceeeeeecCCc-eEEeC
Confidence 5699999999998776555 6789999999988 222221 23346677777776 55555
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=1.1e-06 Score=78.41 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=127.1
Q ss_pred EEEECC-CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc-CCCCEEEEEeCC
Q 010296 164 AVALSE-DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS-SDGRYLASGGLD 241 (513)
Q Consensus 164 ~~~~s~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d 241 (513)
++.|.+ ++.++++--..+.|..|+..++...... ......+++. +++. |+.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~g~-l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID----------------------LPGPNGMAFDRPDGR-LYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE----------------------SSSEEEEEEECTTSE-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe----------------------cCCCceEEEEccCCE-EEEEEcC
Confidence 568888 6777777778899999999887654311 1116677777 6654 5555544
Q ss_pred CcEEEEeCCCcceeeeccC-----cCCCeEEEEEecCCCeEEEEeCC--------CcEEEEeCCCCceeEEeecccCCeE
Q 010296 242 RHIHLWDTRIQEHIQAFPG-----HRGPVSCLTFRQGTSELFSGSFD--------RTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
.+.++|+.+++....+.. .....+.+++.|+|++.++.... |.|..++.. ++... +...-...+
T Consensus 61 -~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pN 137 (246)
T PF08450_consen 61 -GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPN 137 (246)
T ss_dssp -CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEE
T ss_pred -ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCccccc
Confidence 456669988865433332 34567899999999977765543 557778876 44333 333456678
Q ss_pred EEEeeCCCe-EE-EEeCCCcEEEEecCCCee-----eEE-ecCC--CCeeEEEeecCCeEE-EEeCCCCEEEEecCCCCe
Q 010296 309 TIDCLRKER-VL-TVGRDRSMQLWKVPEESR-----LVF-RAPA--SSLECCCFISNDEFL-SGSDDGSIELWSLLRKKP 377 (513)
Q Consensus 309 ~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~-----~~~-~~~~--~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~ 377 (513)
.|+|+|++. |+ +-+..+.|..|++..... ..+ .... .....+++..+|.|. +....+.|.+++.. ++.
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 999999985 44 455678899999863222 112 2222 237789999999855 55578999999977 888
Q ss_pred eEEeecC
Q 010296 378 VYIVKNA 384 (513)
Q Consensus 378 ~~~~~~~ 384 (513)
+..+...
T Consensus 217 ~~~i~~p 223 (246)
T PF08450_consen 217 LREIELP 223 (246)
T ss_dssp EEEEE-S
T ss_pred EEEEcCC
Confidence 8887654
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=2.2e-07 Score=82.72 Aligned_cols=215 Identities=13% Similarity=0.111 Sum_probs=136.3
Q ss_pred CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc
Q 010296 180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP 259 (513)
Q Consensus 180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 259 (513)
+|+|..||..+++.+.... +..-.....+.. .+++.++++++.++.|+.||..+|+.+..+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-----------------~~~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-----------------LGPGIGGPVATA-VPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-----------------CSSSCSSEEETE-EEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEE-----------------CCCCCCCccceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 6889999999888876541 000011222222 2246677788899999999999999887666
Q ss_pred CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEe-ecccC-----CeEEEEeeCCCeEEEEeCCCcEEEEecC
Q 010296 260 GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTL-FGHQS-----EVLTIDCLRKERVLTVGRDRSMQLWKVP 333 (513)
Q Consensus 260 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~ 333 (513)
. ...+.... ...+..+++++.++.|+.+|..+++.+... ..... ......+. ++.++++..++.|..+|+.
T Consensus 64 ~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 64 L-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp C-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETT
T ss_pred c-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecC
Confidence 4 22221112 224556777778889999999999998874 32211 11122222 5677788889999999999
Q ss_pred CCeeeEEe-cCCCC----------eeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccc
Q 010296 334 EESRLVFR-APASS----------LECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKIS 402 (513)
Q Consensus 334 ~~~~~~~~-~~~~~----------v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 402 (513)
+++.+... ..... +..-.+..++.++.++.++.+..+|+.+++.+.... ...
T Consensus 141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~---------------- 203 (238)
T PF13360_consen 141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISG---------------- 203 (238)
T ss_dssp TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-----------------
T ss_pred CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCC----------------
Confidence 99886322 22211 122233345577777778864444999998664222 111
Q ss_pred cccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCC
Q 010296 403 NGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESET 455 (513)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~ 455 (513)
+..+ ..+.+..|++++.++.|..||+.++.
T Consensus 204 ----------------------~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 204 ----------------------IYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ----------------------ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ----------------------ccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 2221 34567788888899999999999983
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=4.9e-07 Score=86.49 Aligned_cols=152 Identities=7% Similarity=0.018 Sum_probs=96.2
Q ss_pred cEEEEEEcCCCCE-EEEEeC---CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEE-EeC--CCcEEEEeCCCC
Q 010296 222 HILALAVSSDGRY-LASGGL---DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFS-GSF--DRTVKIWNAEDR 294 (513)
Q Consensus 222 ~v~~~~~s~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~ 294 (513)
.+..-.|+|+|+. ++..+. ...|+++|+.+++...... ..+......|+|||+.|+. .+. +..|+++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999985 554443 3569999998887654433 4555667889999987764 333 356888898877
Q ss_pred ceeEEeecccCCeEEEEeeCCCe-EEEEe-CCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEe-CC----
Q 010296 295 AYISTLFGHQSEVLTIDCLRKER-VLTVG-RDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGS-DD---- 364 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d---- 364 (513)
.. ..+..+........|+|+|+ ++..+ ..+ .|+++++.++........... ...|+|+|. ++..+ ..
T Consensus 268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 64 34443443344567999984 44333 223 688888877665432222111 248999996 44332 22
Q ss_pred ----CCEEEEecCCCCe
Q 010296 365 ----GSIELWSLLRKKP 377 (513)
Q Consensus 365 ----g~i~iwd~~~~~~ 377 (513)
..|.+.++.++..
T Consensus 345 ~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCCcEEEEEECCCCCe
Confidence 3577777776653
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=6.7e-09 Score=91.99 Aligned_cols=159 Identities=16% Similarity=0.249 Sum_probs=112.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce----eeeccCcCCCeEEEEEecCCCeEEE---EeCCCcEEEEeCCCCc
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEH----IQAFPGHRGPVSCLTFRQGTSELFS---GSFDRTVKIWNAEDRA 295 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~ 295 (513)
+..+..++.+++||++..+....++++..... +..+. -...-+++.|..+...... ++....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 45566788888999888887776776554332 22222 1222344455444444443 3445556666665543
Q ss_pred eeEEeecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEec
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDEFLSGSDDGSIELWSL 372 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~ 372 (513)
...+.+|-..++.++++||++++ ++..|..|++-.......+ ...+|..-|..++..++..|++++.|++|++||+
T Consensus 144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 33456799999999999988655 8889999999887665544 4567889999999999988999999999999999
Q ss_pred CCCCeeEEeec
Q 010296 373 LRKKPVYIVKN 383 (513)
Q Consensus 373 ~~~~~~~~~~~ 383 (513)
.+++.+.++..
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99998876653
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=1.6e-08 Score=84.29 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=119.8
Q ss_pred eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC
Q 010296 162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD 241 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 241 (513)
|+.+.|+.+ -.|+++..++.+..+....+.+.... .......+...+..|..+-.+-+.+--++.++++..|
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~-------~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d 110 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLW-------ERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD 110 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechh-------hcccCcCceeeeeccCCCCCcccccccCCceEecCCC
Confidence 666666654 34677777777766655444333211 0000011111122233332233333446779999999
Q ss_pred CcEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEe-----CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 242 RHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGS-----FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 242 g~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
|.+.+.+.+.... ...+......-.+.++...++.+.++. .-+..++|+++..+.+..-......|.+++-+|.
T Consensus 111 g~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 111 GSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPA 190 (319)
T ss_pred ceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcc
Confidence 9999998764211 111111111122233334445454432 2245666776544332222223334888888884
Q ss_pred C--eEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCC
Q 010296 316 E--RVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLR 374 (513)
Q Consensus 316 ~--~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~ 374 (513)
. .+++|+.+|.+.+||.+..... .+..|...+..+.|+|.. +|++++.||.+-.||..+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3 4557788999999999887544 567888999999999976 599999999999999765
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=6.6e-07 Score=85.95 Aligned_cols=256 Identities=8% Similarity=-0.003 Sum_probs=154.1
Q ss_pred CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
+..++.++.+|.+..+|..+++.+..... ...+.+ ... .+..++.++.++.|..+|.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--------------------~~~~~ssP~v--~~~~v~v~~~~g~l~ald~ 177 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV--------------------AGEALSRPVV--SDGLVLVHTSNGMLQALNE 177 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC--------------------CCceecCCEE--ECCEEEEECCCCEEEEEEc
Confidence 45677788899999999999998764410 011111 111 2446677778899999999
Q ss_pred CCcceeeeccCcCCCe-----EEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC-------CeEEEEeeC---
Q 010296 250 RIQEHIQAFPGHRGPV-----SCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS-------EVLTIDCLR--- 314 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--- 314 (513)
.+|+.+..+......+ .+-.. .+..++.++.+|.+..+|..+++.+........ ....+..+|
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 9999887665321110 01111 123577778899999999999887655431110 011111222
Q ss_pred CCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCc
Q 010296 315 KERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNF 394 (513)
Q Consensus 315 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
++.+++++.++.+..+|+.+++.+....... ...+. ..++.++.++.+|.+..+|..+++.+........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~-~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-------- 325 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFA-VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-------- 325 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcE-EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC--------
Confidence 6778888889999999999887663332211 11222 2356788888999999999999987554321100
Q ss_pred ccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEE-EE
Q 010296 395 EQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVN-SL 473 (513)
Q Consensus 395 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~-~v 473 (513)
. ...+..+ .+.+|+.++.+|.|+++|..++.. +.... .. ...+. ..
T Consensus 326 ------------------------~----~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~-~~~~~-~~-~~~~~s~P 372 (394)
T PRK11138 326 ------------------------R----LLTAPVL--YNGYLVVGDSEGYLHWINREDGRF-VAQQK-VD-SSGFLSEP 372 (394)
T ss_pred ------------------------C----cccCCEE--ECCEEEEEeCCCEEEEEECCCCCE-EEEEE-cC-CCcceeCC
Confidence 0 0111122 145788889999999999988832 22221 11 12222 12
Q ss_pred EeecCCCEEEEEecCCCcccccc
Q 010296 474 AFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 474 ~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.+ .+..|+++ +.+|.|..++
T Consensus 373 ~~--~~~~l~v~-t~~G~l~~~~ 392 (394)
T PRK11138 373 VV--ADDKLLIQ-ARDGTVYAIT 392 (394)
T ss_pred EE--ECCEEEEE-eCCceEEEEe
Confidence 22 24467777 7899887664
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.94 E-value=5.1e-07 Score=86.69 Aligned_cols=272 Identities=13% Similarity=0.041 Sum_probs=155.3
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCC-cccE-EEEEEcCCCCEEEEEeCCCcEEEE
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQ-SKHI-LALAVSSDGRYLASGGLDRHIHLW 247 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~s~~~~~l~s~~~dg~i~vw 247 (513)
.+..+++++.+|.|.-+|..+++.+......... ...... ...+ ..+.. .+..++.++.+|.++.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~al 135 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD----------GWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYAL 135 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc----------cccccccccccccccEE--ECCEEEEEcCCCEEEEE
Confidence 3567888888899999999999877543111100 000000 0000 01111 35567778889999999
Q ss_pred eCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE-EEEeeC---CCeEEEEeC
Q 010296 248 DTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL-TIDCLR---KERVLTVGR 323 (513)
Q Consensus 248 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~---~~~~~~~~~ 323 (513)
|..+|+.+-..........+.... +..++.++.++.|..+|..+|+.+..+......+. ....+| ++.++.++.
T Consensus 136 d~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 136 NAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred ECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence 999999887765432211111222 34677788899999999999998877653211110 000111 456777888
Q ss_pred CCcEEEEecCCCeeeEEecCCCC--------eeEEEe---ecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCC
Q 010296 324 DRSMQLWKVPEESRLVFRAPASS--------LECCCF---ISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLK 392 (513)
Q Consensus 324 d~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~---~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 392 (513)
++.+..++..+++.........+ ...+.. ..++.+++++.+|.+..+|..+++.+.......
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~------- 286 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS------- 286 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------
Confidence 89999999888765522111000 000111 125677778889999999999998776543110
Q ss_pred CcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEE
Q 010296 393 NFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNS 472 (513)
Q Consensus 393 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 472 (513)
...+.. .+..|+.++.+|.|..+|..++......-. .. .....+
T Consensus 287 --------------------------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~-~~~~~s 330 (394)
T PRK11138 287 --------------------------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD-LL-HRLLTA 330 (394)
T ss_pred --------------------------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-cC-CCcccC
Confidence 111112 345777788889999999988733222110 00 011111
Q ss_pred EEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 473 LAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 473 v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
..+ .+.+|+++ +.+|.|...+..++.
T Consensus 331 p~v--~~g~l~v~-~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 331 PVL--YNGYLVVG-DSEGYLHWINREDGR 356 (394)
T ss_pred CEE--ECCEEEEE-eCCCEEEEEECCCCC
Confidence 111 13455555 566777666655543
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.3e-07 Score=91.37 Aligned_cols=155 Identities=17% Similarity=0.291 Sum_probs=110.1
Q ss_pred hhccCCCeEEEEECCC-------------CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcc
Q 010296 155 LLKHRQSVTAVALSED-------------DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSK 221 (513)
Q Consensus 155 ~~~h~~~V~~~~~s~~-------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (513)
+..|.+.|.-..+.-+ |.+++||+.||+|.|-.+-+.+....+ ....
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--------------------df~r 113 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--------------------DFKR 113 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--------------------ecCC
Confidence 3456666665555444 999999999999999998887765533 4467
Q ss_pred cEEEEEEcCC-----CCEEEEEeCCCcEEEEeCCC--cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 222 HILALAVSSD-----GRYLASGGLDRHIHLWDTRI--QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 222 ~v~~~~~s~~-----~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
++.+++++|+ .+.+++|+..| +.++.-.- .+....+....++|.++.|. |+++|-++.+| |+|||+.++
T Consensus 114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecccc
Confidence 7999999997 56899999888 77775321 11111355567899999996 56677766555 899999999
Q ss_pred ceeEEeecccCCe------EEEEeeCCCeEEEEeCCCcEEEEecCC
Q 010296 295 AYISTLFGHQSEV------LTIDCLRKERVLTVGRDRSMQLWKVPE 334 (513)
Q Consensus 295 ~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~d~~i~iwd~~~ 334 (513)
+.+..+......+ ..+.|.+..+++ .|...+|++..++.
T Consensus 190 ~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 190 QRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGWGDSVKICSIKK 234 (846)
T ss_pred ceeeccCCCCCCCCcccCCCceEecCCCeEE-EecCCeEEEEEEec
Confidence 8887775443333 346666555554 55667888888873
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.1e-08 Score=94.23 Aligned_cols=250 Identities=12% Similarity=0.160 Sum_probs=159.5
Q ss_pred ccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCcccccc-CCChhhhccCCCCCCCCCCCCCcccEEEEE
Q 010296 149 TDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYL-WPSEEVLKSHGAKDPQGRATKQSKHILALA 227 (513)
Q Consensus 149 ~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (513)
..+.-+++.|+.+|..+-|-.+.++++++ ||.|.+||.--+..+... +.+ ..+..+.|.|+.
T Consensus 774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap---------------k~~a~~~ikcl~ 836 (1034)
T KOG4190|consen 774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP---------------KEGAGGNIKCLE 836 (1034)
T ss_pred ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc---------------ccCCCceeEecc
Confidence 44667889999999999999998888765 789999998777765532 110 112222344432
Q ss_pred EcCCCCEEEE-EeCCCcEEEEeCCCcceeeecc-----CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee
Q 010296 228 VSSDGRYLAS-GGLDRHIHLWDTRIQEHIQAFP-----GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 228 ~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
-- +...++. ++...+|+++|.+.++.+..++ +..+.+.+++..+.|+.++++-.+|.|.+.|.++|+.+..+.
T Consensus 837 nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 837 NV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred cC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 11 3334444 4678999999999887665553 345678999999999999999999999999999999888777
Q ss_pred cccCCeEEEEeeCCCeEEEEeCCCcEEE-EecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCC-CeeE
Q 010296 302 GHQSEVLTIDCLRKERVLTVGRDRSMQL-WKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRK-KPVY 379 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~~~~~~~~d~~i~i-wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~ 379 (513)
........++...+..++....|.++.+ |....+.......+........-+-.-.+++......+.+|--... ....
T Consensus 916 pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~s 995 (1034)
T KOG4190|consen 916 PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAES 995 (1034)
T ss_pred cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhh
Confidence 6666666665544555666677888888 8766555443222211111111111123666666666667642111 0000
Q ss_pred EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296 380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL 448 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v 448 (513)
++... ......+..++++.-|-..-++.|...|.|.+
T Consensus 996 titKi--------------------------------R~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 996 TITKI--------------------------------RPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhccc--------------------------------cccccCCccceeeeccccchhhccCCCCceee
Confidence 11000 00222334788888887777888888888876
No 304
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.6e-07 Score=91.07 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=87.7
Q ss_pred eEEEEECCCCCeEEEEe----CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 162 VTAVALSEDDSKGFSAS----KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
-+-+.|+|...+|++++ ..|.|.||- ++|++.... .-.-.+++++|+|..-.|+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--------------------t~P~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--------------------TYPVHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--------------------ccceehhhhccChHHHHHhh
Confidence 34468999999998876 457888874 444433211 11223677999999888899
Q ss_pred EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE 292 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 292 (513)
|=.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.|.+|.+.
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9888999999988877776677799999999999999999999999999999876
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.89 E-value=8.8e-07 Score=78.87 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=125.0
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
++.++++++.++.|..||..+|+.+..+..... .... . ...+..+++++.++.|+.+|.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----------------~~~~---~--~~~~~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----------------ISGA---P--VVDGGRVYVGTSDGSLYALDA 93 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----------------GGSG---E--EEETTEEEEEETTSEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----------------ccce---e--eecccccccccceeeeEeccc
Confidence 567788888999999999999987765411000 0011 1 123556677778889999999
Q ss_pred CCcceeeec-cCcC---CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCC----------eEEEEeeCC
Q 010296 250 RIQEHIQAF-PGHR---GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSE----------VLTIDCLRK 315 (513)
Q Consensus 250 ~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~~ 315 (513)
.+|+.+..+ .... .....+.....+..++++..++.|..+|+.+|+.+......... +..-....+
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred CCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence 999988774 3221 12233333334788888888999999999999998777653322 112222235
Q ss_pred CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEE
Q 010296 316 ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 316 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
+.+++++.++.+..+|+.++..+. ......+..+....++.+++++.++.|.+||+.+++.+..
T Consensus 174 ~~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 174 GRVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TEEEEECCTSSEEEEETTTTEEEE-EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCEEE-EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 577788878864444999998664 3334444443445556777777999999999999987643
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=7.6e-09 Score=89.69 Aligned_cols=120 Identities=17% Similarity=0.300 Sum_probs=96.0
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-----ceeeeccCcCCCeEEEEEec-CCCeEEEEeCCCcEEEEeCC
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ-----EHIQAFPGHRGPVSCLTFRQ-GTSELFSGSFDRTVKIWNAE 292 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 292 (513)
..+.|.++.|...++++..|+.+|.|.++|++.+ .+...+. |...|+++.... ++++|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 5667999999998999999999999999999865 3444554 899999998877 78899999999999999999
Q ss_pred CCce---eEEeecccCCeEEEEe--eC-CCeEEEEeCCCcEEEEecCCCeeeE
Q 010296 293 DRAY---ISTLFGHQSEVLTIDC--LR-KERVLTVGRDRSMQLWKVPEESRLV 339 (513)
Q Consensus 293 ~~~~---~~~~~~~~~~v~~~~~--~~-~~~~~~~~~d~~i~iwd~~~~~~~~ 339 (513)
.-++ +.++.+|-..-.-+-+ .+ .+.+++++.|...+||.++.+..+.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 7776 8888888654333333 22 4567788899999999998877664
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.86 E-value=3.8e-08 Score=82.11 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=111.1
Q ss_pred CCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296 146 PEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA 225 (513)
Q Consensus 146 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (513)
.....++..+..|+++=.+-+.+-.++.++++..||.+.+++.+.-..+..- . ...|.+ -.+
T Consensus 76 t~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~---i--------------~~~~~~-~as 137 (319)
T KOG4714|consen 76 DDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSR---I--------------PSIHSG-SAS 137 (319)
T ss_pred ccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhh---c--------------cccccc-ccc
Confidence 3344555666677777666667777888999999999999998752211100 0 001111 112
Q ss_pred EEEcCCCCEEEEEe-----CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCce-eE
Q 010296 226 LAVSSDGRYLASGG-----LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAY-IS 298 (513)
Q Consensus 226 ~~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~ 298 (513)
.+....++.+.++. .-+..+.|+++..+....-......|++++-+|..+ .+++|+.||.|.+||.+.... +.
T Consensus 138 ~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S 217 (319)
T KOG4714|consen 138 RKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS 217 (319)
T ss_pred cceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH
Confidence 22223444444432 124456666654332222222233489999998655 466888899999999998754 34
Q ss_pred EeecccCCeEEEEeeCC--CeEEEEeCCCcEEEEecCC
Q 010296 299 TLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQLWKVPE 334 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~ 334 (513)
.+..|..+++.+.|+|. ..|++++.||.+..||..+
T Consensus 218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 56789999999999995 4899999999999999875
No 308
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=2.8e-08 Score=94.63 Aligned_cols=179 Identities=15% Similarity=0.270 Sum_probs=127.5
Q ss_pred eEEEEECCC--CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC-CEEEEE
Q 010296 162 VTAVALSED--DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG-RYLASG 238 (513)
Q Consensus 162 V~~~~~s~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~ 238 (513)
|-.+.|+|. ..+-++......-.+|++........ ...+.+|...|+.+.|+|+. ..|+++
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI----------------ef~lhghsraitd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI----------------EFVLHGHSRAITDINFNPQHPDVLATC 133 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccce----------------EEEEecCccceeccccCCCCCcceeec
Confidence 556677664 33444444455567888764332110 11357899999999999964 578999
Q ss_pred eCCCcEEEEeCCCcc-eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-ceeEEeecccCCeEEEEeeC--
Q 010296 239 GLDRHIHLWDTRIQE-HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-AYISTLFGHQSEVLTIDCLR-- 314 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-- 314 (513)
+.|-.+..||+++-. ++..+..-......++|+-....+++.+....|++||++.+ .++..+++|...|+.+.|..
T Consensus 134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred cccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh
Confidence 999999999998753 45555544556678999887777777888889999999876 45677888988999999876
Q ss_pred CCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCC
Q 010296 315 KERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISND 356 (513)
Q Consensus 315 ~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~ 356 (513)
.+.+++++.|++|++|+....... .......++..-.+.|-|
T Consensus 214 ~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 214 YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred hhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 467889999999999998654322 333344556655666644
No 309
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.85 E-value=3.3e-06 Score=84.75 Aligned_cols=135 Identities=7% Similarity=0.062 Sum_probs=100.0
Q ss_pred eCCCcEEEEeCCCcceeeeccCcCCC-eEEEEEec-----CCCeEEEEeCCCcEEEEeCCCCc--eeEE---eecccCCe
Q 010296 239 GLDRHIHLWDTRIQEHIQAFPGHRGP-VSCLTFRQ-----GTSELFSGSFDRTVKIWNAEDRA--YIST---LFGHQSEV 307 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~--~~~~---~~~~~~~v 307 (513)
.....|+-.|++.|+++..+..|... |..++-.. .....+.|-.+..|..||.+-.. ++.. ........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999887654 54443221 12346778888999999998642 2321 11244567
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296 308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL 373 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~ 373 (513)
.|++...+|++++|+.+|.|++||--..... .+.+...+|..+.++.+|+.+.+..+..|.|++..
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 8888889999999999999999995433222 44566789999999999998888888899998863
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=3.1e-06 Score=72.43 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=119.2
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCC--ceeEEe---ecccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEe
Q 010296 268 LTFRQGTSELFSGSFDRTVKIWNAEDR--AYISTL---FGHQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFR 341 (513)
Q Consensus 268 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~ 341 (513)
++.+.+|+.||.. .|..|.|-..+.. ..+.+. +.....-+.++|+||+.++ .+...|+|++||+.........
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5667788766654 5667766655432 122222 2233456889999999776 5667899999999865544322
Q ss_pred cC-------CCCeeEEEeecCC-------eEEEEeCCCCEEEEecCCC-----CeeEEeecCCCcccCCCCcccCcCccc
Q 010296 342 AP-------ASSLECCCFISND-------EFLSGSDDGSIELWSLLRK-----KPVYIVKNAHPLLDGLKNFEQDEGKIS 402 (513)
Q Consensus 342 ~~-------~~~v~~~~~~~~~-------~~~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~ 402 (513)
.. ...|..+.|.+.. .|++-...|.++-|-+..+ +....+...
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~------------------ 143 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS------------------ 143 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec------------------
Confidence 21 1334455554432 3667777777777665322 222222211
Q ss_pred cccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-----------CcEEEEEeCCCCcceeeeee--------
Q 010296 403 NGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-----------GSVRLWAIESETKDIQPLYN-------- 463 (513)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------g~v~vwd~~~~~~~~~~~~~-------- 463 (513)
......|+++.++|..++|++|+.. --+.-|.+-++....+....
T Consensus 144 ----------------~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 144 ----------------SHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred ----------------ccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 1123348899999988888777521 13667776544211111000
Q ss_pred ------------------cCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 464 ------------------LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 464 ------------------~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
......|..|..||||..||+. ..+|.|.+|++..
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i-h~sG~lsLW~iPs 260 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI-HFSGSLSLWEIPS 260 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE-EcCCeEEEEecCc
Confidence 0124568899999999999999 9999999998754
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=1.1e-07 Score=93.06 Aligned_cols=184 Identities=19% Similarity=0.202 Sum_probs=135.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEE
Q 010296 231 DGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTI 310 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 310 (513)
++..++.|+....+..+|+++.+..+...-..+.|.-|. .+++++++|...|+|.+-|.++.+.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 455677888888899999998887776654444454444 567899999999999999999999999999999999888
Q ss_pred EeeCCCeEEEEeC---------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCC--eEEEEeCCCCEEEEecCCC-Cee
Q 010296 311 DCLRKERVLTVGR---------DRSMQLWKVPEESRLVFRAPASSLECCCFISND--EFLSGSDDGSIELWSLLRK-KPV 378 (513)
Q Consensus 311 ~~~~~~~~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~dg~i~iwd~~~~-~~~ 378 (513)
... ++.|++||. |..|+|||++..+.+.-..-.....-+.|.|.- ++++++..|...+.|..+. .+.
T Consensus 224 Dv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 224 DVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred ecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 764 456667763 567899999987766433333333556677753 5888999999999884332 121
Q ss_pred EEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 379 YIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
...... ......+..+++|++|+.|+.|..+|.|.+|.-
T Consensus 303 ~~~~~v----------------------------------~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 303 AGVKMV----------------------------------NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeEE----------------------------------ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 111100 111223899999999999999999999999983
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=5.3e-09 Score=62.98 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=35.6
Q ss_pred cchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEe
Q 010296 150 DEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD 187 (513)
Q Consensus 150 ~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd 187 (513)
++++++.+|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678899999999999999999999999999999997
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=8.9e-08 Score=86.15 Aligned_cols=255 Identities=15% Similarity=0.120 Sum_probs=167.4
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---cceeeeccCcCCCeEEEEEecCCCeEEEEeC-CCcEEEEeCCC
Q 010296 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRI---QEHIQAFPGHRGPVSCLTFRQGTSELFSGSF-DRTVKIWNAED 293 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 293 (513)
-|...|+.+..+ -.+++.+++.||.++.|.-.. -+.+..+..|.+.|.+++.+.++..+.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 466667776555 467999999999999998543 2345667779999999999999999999777 99999999987
Q ss_pred CceeEEeec--ccCCeEEEEeeCCC--eEEEE--eCCCcEEEEecCCCeee---EEecCCCCeeEEEeecCCe-EEEEeC
Q 010296 294 RAYISTLFG--HQSEVLTIDCLRKE--RVLTV--GRDRSMQLWKVPEESRL---VFRAPASSLECCCFISNDE-FLSGSD 363 (513)
Q Consensus 294 ~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~--~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~-~~~~~~ 363 (513)
...+..++. .++.+.. ..++.. .+++. ..++.+.++|-....+. ....|.++|.++.+.+.+. +++...
T Consensus 86 ~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 655533321 2222222 223332 23333 36899999998765432 4556889999999999886 778888
Q ss_pred CCCEEEEecCC-CC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296 364 DGSIELWSLLR-KK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA 441 (513)
Q Consensus 364 dg~i~iwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~ 441 (513)
.|.|.-|.... .+ +...+..... .....+.........+++.|+|++..+.+-+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K------------------------~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELK------------------------HETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred cceeEeecCCCcccCcccccccccc------------------------ccchhhcccccccCccceEEccccCcccccC
Confidence 99999999763 11 1110000000 0000111133445588999999999999999
Q ss_pred CCCcEEEEEeCCCCcceeeeeec--------------C----------------c-ccEEEEEEeecCCCEEEEEecCCC
Q 010296 442 GNGSVRLWAIESETKDIQPLYNL--------------P----------------L-VGFVNSLAFAKSGQFLIAGVGQEP 490 (513)
Q Consensus 442 ~dg~v~vwd~~~~~~~~~~~~~~--------------~----------------~-~~~v~~v~~sp~~~~l~~~~~~dg 490 (513)
.|..|+++.+.++ +.++.+... . + ...-+.+.|...|++|+.+ +-=
T Consensus 221 ~DrkVR~F~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~-t~~- 297 (558)
T KOG0882|consen 221 PDRKVRGFVFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYG-TIL- 297 (558)
T ss_pred cccEEEEEEeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEee-cce-
Confidence 9999999999887 222222111 0 0 1234567888889999887 322
Q ss_pred cccccccCCCc
Q 010296 491 RLGRWGHLPAA 501 (513)
Q Consensus 491 ~v~~W~~~~~~ 501 (513)
.|++.++.++.
T Consensus 298 gikvin~~tn~ 308 (558)
T KOG0882|consen 298 GIKVINLDTNT 308 (558)
T ss_pred eEEEEEeecCe
Confidence 35666665543
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=4e-07 Score=88.08 Aligned_cols=187 Identities=12% Similarity=0.120 Sum_probs=136.0
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 299 (513)
...++|++++ +++|+.|+.+|.|++++.. +.+ .+...|... .-.|.++++|+.||+|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3457778887 7899999999999999865 333 333335443 56799999999999999999998887776
Q ss_pred eecccCCeEEEEeeCC------CeEEEEeCCCcEEEEecC---CCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEE
Q 010296 300 LFGHQSEVLTIDCLRK------ERVLTVGRDRSMQLWKVP---EESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELW 370 (513)
Q Consensus 300 ~~~~~~~v~~~~~~~~------~~~~~~~~d~~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iw 370 (513)
+. ...++.+++++|+ .++++||..| +.++.-+ ...........++|.++.|.. .+++-..|--|++|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~lIAWand~Gv~vy 184 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--NLIAWANDDGVKVY 184 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC--cEEEEecCCCcEEE
Confidence 65 6778999999996 4788999888 7777532 222334566678899998854 46666666669999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWA 450 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd 450 (513)
|+.+.+.+..++..+... ........+.|.++. .|+.|=.| +|+|..
T Consensus 185 d~~~~~~l~~i~~p~~~~-------------------------------R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~ 231 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSV-------------------------------RPELFPPHLHWQDED-RLVIGWGD-SVKICS 231 (846)
T ss_pred eccccceeeccCCCCCCC-------------------------------CcccCCCceEecCCC-eEEEecCC-eEEEEE
Confidence 999999888887655321 111125567887764 45555544 799998
Q ss_pred eCC
Q 010296 451 IES 453 (513)
Q Consensus 451 ~~~ 453 (513)
++.
T Consensus 232 I~~ 234 (846)
T KOG2066|consen 232 IKK 234 (846)
T ss_pred Eec
Confidence 873
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-06 Score=78.35 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=97.0
Q ss_pred eeccccCCCcccchhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChh--hhccCCCCCCCCCC
Q 010296 139 IASRVQKPEATDEFRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEE--VLKSHGAKDPQGRA 216 (513)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 216 (513)
.+++....+..+.++..+ |...-.++.+++....+.-+ ....+-+-.-..+.. +.+... .+..+.... ...+
T Consensus 116 ~a~~~s~~ps~q~~a~hk-h~qk~f~v~r~~gcrli~y~-~~~s~lv~sQks~qa---~lpGvGv~~l~~~~fks-sq~l 189 (463)
T KOG1645|consen 116 EAARISQEPSGQAFAIHK-HKQKSFSVGRNAGCRLIGYD-ESSSTLVVSQKSGQA---LLPGVGVQKLESHDFKS-SQIL 189 (463)
T ss_pred hhhhhccCchhhHHHHHh-hcccceeeeecCCceEEecc-cccceeeeeccchhh---cCCccceEEeccCCcch-hhcc
Confidence 334444444445555555 77777788888765544433 222222222222211 111111 111111111 2245
Q ss_pred CCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCC-CeEEEEeCCCcEEEEeCCCC
Q 010296 217 TKQSKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGT-SELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 294 (513)
..|...|..++|||..+ ++..++.+..|+|.|+++..++..+..+ ..+++++|.-+. ++|++|-.+|.|.|||++..
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 67888999999999776 7888999999999999999999999877 889999998765 56778889999999999864
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=5.5e-09 Score=101.35 Aligned_cols=215 Identities=14% Similarity=0.181 Sum_probs=150.9
Q ss_pred CCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC--cEEEEeCC
Q 010296 215 RATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR--TVKIWNAE 292 (513)
Q Consensus 215 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 292 (513)
.+..|....+|++|+-..++|+.|+..|.|++|++.+|.....+.+|..+|+.+.-+.+|..+++.+.-. ...+|++.
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 4567888999999999999999999999999999999999999999999999999999998877655433 46789986
Q ss_pred C-CceeEEeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCeee-EEe----cCCCCeeEEEeecCCeEEEEeCCC
Q 010296 293 D-RAYISTLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEESRL-VFR----APASSLECCCFISNDEFLSGSDDG 365 (513)
Q Consensus 293 ~-~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~-~~~----~~~~~v~~~~~~~~~~~~~~~~dg 365 (513)
. +...+.+. .-.++.|+....+ +.++......+||+.++..+ ++. .....-.++.|+|...++.. ||
T Consensus 1176 s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--dG 1249 (1516)
T KOG1832|consen 1176 STGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--DG 1249 (1516)
T ss_pred cccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--Cc
Confidence 5 34444443 2356777764332 23444467899999987665 211 12233467889999886653 55
Q ss_pred CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCc
Q 010296 366 SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGS 445 (513)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~ 445 (513)
.+||++....++.+..... -..-.|+|.|.-++.-+
T Consensus 1250 --vLWDvR~~~aIh~FD~ft~--------------------------------------~~~G~FHP~g~eVIINS---- 1285 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFTD--------------------------------------YGGGGFHPSGNEVIINS---- 1285 (1516)
T ss_pred --eeeeeccHHHHhhhhhhee--------------------------------------cccccccCCCceEEeec----
Confidence 5899998877766643221 12335889998888765
Q ss_pred EEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE
Q 010296 446 VRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 446 v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 485 (513)
.|||+++. +.+...|.- .-..|.|+..|..+.+.
T Consensus 1286 -EIwD~RTF----~lLh~VP~L-dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 -EIWDMRTF----KLLHSVPSL-DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -hhhhhHHH----HHHhcCccc-cceEEEeccCccchhhh
Confidence 48999876 333332221 13456787777766554
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.2e-08 Score=86.05 Aligned_cols=274 Identities=15% Similarity=0.102 Sum_probs=173.9
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
-|...|+.+..+. .+++.+++.||.++.|.-..-..+.. ...+..|...|.+++.+-++.++.
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEf----------------VKhFraHL~~I~sl~~S~dg~L~~ 69 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEF----------------VKHFRAHLGVILSLAVSYDGWLFR 69 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceee----------------hhhhHHHHHHHHhhhccccceeEe
Confidence 4888888877654 57899999999999998654222211 113467888899999999999999
Q ss_pred EEeC-CCcEEEEeCCCcceeeeccCcCCCeEEEEE-ecCC--C-eEE-EEeCCCcEEEEeCCCCce--eEEeecccCCeE
Q 010296 237 SGGL-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTF-RQGT--S-ELF-SGSFDRTVKIWNAEDRAY--ISTLFGHQSEVL 308 (513)
Q Consensus 237 s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~--~-~l~-~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~ 308 (513)
|++. |..++++|+.+-..+..++...-+ ..+.| ...| . .|+ +.-.++.|.|+|-....+ ...-.-|..+|.
T Consensus 70 Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~ 148 (558)
T KOG0882|consen 70 SVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK 148 (558)
T ss_pred eccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence 9777 999999998866554333321111 12222 2222 1 233 334578999999776542 333355899999
Q ss_pred EEEeeCCC-eEEEEeCCCcEEEEecCCC-----eee-----------EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEE
Q 010296 309 TIDCLRKE-RVLTVGRDRSMQLWKVPEE-----SRL-----------VFRAPASSLECCCFISNDE-FLSGSDDGSIELW 370 (513)
Q Consensus 309 ~~~~~~~~-~~~~~~~d~~i~iwd~~~~-----~~~-----------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iw 370 (513)
++.+++-+ .+++....|.|..|..... ..+ .+........++.|+|.+. +.+-+.|..|+++
T Consensus 149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 99999866 5567778999999998741 101 1223456678899999996 6677899999999
Q ss_pred ecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC-CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEE
Q 010296 371 SLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN-LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLW 449 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vw 449 (513)
.+.+++.++.+............. .+.+....-+. +....-........-+.++|...|++|+-|+-=| |+|.
T Consensus 229 ~~KtGklvqeiDE~~t~~~~q~ks-----~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVLTDAQYQPKS-----PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred Eeccchhhhhhhccchhhhhcccc-----ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 999999887765432211000000 00000000000 0000000011122356788999999999998776 8899
Q ss_pred EeCCC
Q 010296 450 AIESE 454 (513)
Q Consensus 450 d~~~~ 454 (513)
++.++
T Consensus 303 n~~tn 307 (558)
T KOG0882|consen 303 NLDTN 307 (558)
T ss_pred EeecC
Confidence 98876
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=4.2e-08 Score=85.20 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=114.9
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC-----ceeEE
Q 010296 227 AVSSD--GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR-----AYIST 299 (513)
Q Consensus 227 ~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~ 299 (513)
+|+-+ +-. ++.+.+-.|-+-++.+|-. +.|. ..+.|.++.|...+++++.|+.+|.|..+|++.+ .+...
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 55532 334 4444567788889887753 2333 5678999999998999999999999999999875 34555
Q ss_pred eecccCCeEEEEeeC-C-CeEEEEeCCCcEEEEecCCCee----eEEecCCCCeeEEEe--ec-CCeEEEEeCCCCEEEE
Q 010296 300 LFGHQSEVLTIDCLR-K-ERVLTVGRDRSMQLWKVPEESR----LVFRAPASSLECCCF--IS-NDEFLSGSDDGSIELW 370 (513)
Q Consensus 300 ~~~~~~~v~~~~~~~-~-~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~--~~-~~~~~~~~~dg~i~iw 370 (513)
+. |...|+++.... + ..+++.+.+|+|++||++..++ ..+.+|...-.-+-+ .+ .|.+++++.|...+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 55 889999988765 3 4677888999999999986554 355666543332222 22 3457899999999999
Q ss_pred ecCCCCeeEEeecCCC
Q 010296 371 SLLRKKPVYIVKNAHP 386 (513)
Q Consensus 371 d~~~~~~~~~~~~~~~ 386 (513)
.+..+..+.+++....
T Consensus 374 sl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPYS 389 (425)
T ss_pred ecccCceeeccCCCCc
Confidence 9999999998875543
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3.6e-06 Score=80.56 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=106.2
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
|...|.--+++..+++++.|+.-|.|++|+-..+.....- ..+....+..+..|++..++|.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAa 93 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAA 93 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhh
Confidence 5666777788889999999999999999998777654321 1223455777788999999999
Q ss_pred EeCCCcEEEEeCCCccee-----eec-cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc----eeEEeecccCCe
Q 010296 238 GGLDRHIHLWDTRIQEHI-----QAF-PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA----YISTLFGHQSEV 307 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v 307 (513)
|+..|.|.++-+....+. ... +.|...|++++|++++..+++|..-|.|.+-.+.+.. ..+.+....+.|
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 999999999988764321 111 2378899999999999999999999999999887721 123333456677
Q ss_pred EEEEeeCCCeEEE
Q 010296 308 LTIDCLRKERVLT 320 (513)
Q Consensus 308 ~~~~~~~~~~~~~ 320 (513)
..+.+. ++.+++
T Consensus 174 VQlD~~-q~~LLV 185 (726)
T KOG3621|consen 174 VQLDYL-QSYLLV 185 (726)
T ss_pred EEeecc-cceehH
Confidence 777765 344443
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.76 E-value=1.9e-05 Score=74.54 Aligned_cols=260 Identities=15% Similarity=0.125 Sum_probs=140.7
Q ss_pred CCCCCeEEEEe---------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 168 SEDDSKGFSAS---------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 168 s~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
|||+++++... ..+.+.|||+.++...... .....+....|||+|+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--------------------~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--------------------PPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---------------------EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--------------------CCccccccceeecCCCeeEEE
Confidence 68888887643 2467899999987655421 114568889999999999988
Q ss_pred eCCCcEEEEeCCCcceeeec-cC-------c---------CCCeEEEEEecCCCeEEEEeCC-Cc---------------
Q 010296 239 GLDRHIHLWDTRIQEHIQAF-PG-------H---------RGPVSCLTFRQGTSELFSGSFD-RT--------------- 285 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~-~~-------~---------~~~v~~~~~~~~~~~l~~~~~d-g~--------------- 285 (513)
. ++.|.++++.++...+.- .+ - -+.-..+-|+|++++|+....| ..
T Consensus 61 ~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~ 139 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQ 139 (353)
T ss_dssp E-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTES
T ss_pred e-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCcccc
Confidence 7 678999998777544221 11 0 1223568899999998865432 22
Q ss_pred --------------------EEEEeCCCCceeEEe-----ecccCCeEEEEeeCCCe-EEEEe--CC---CcEEEEecCC
Q 010296 286 --------------------VKIWNAEDRAYISTL-----FGHQSEVLTIDCLRKER-VLTVG--RD---RSMQLWKVPE 334 (513)
Q Consensus 286 --------------------i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~~~~~--~d---~~i~iwd~~~ 334 (513)
+.|+++.+++....- .....-+..+.|.+++. ++..- .+ ..+.++|..+
T Consensus 140 yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t 219 (353)
T PF00930_consen 140 YPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST 219 (353)
T ss_dssp S-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred CCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence 333444444332111 11233467788888876 55332 22 2355667765
Q ss_pred Ceee--EEecCCCC---eeEEEee-cCC-e-EEEEeCCCCEEEEec--CCCCeeEEeecCCCcccCCCCcccCcCccccc
Q 010296 335 ESRL--VFRAPASS---LECCCFI-SND-E-FLSGSDDGSIELWSL--LRKKPVYIVKNAHPLLDGLKNFEQDEGKISNG 404 (513)
Q Consensus 335 ~~~~--~~~~~~~~---v~~~~~~-~~~-~-~~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 404 (513)
+... ........ .....+. +++ . +.....+|.-+||-+ ..+.+ ..+...
T Consensus 220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G-------------------- 278 (353)
T PF00930_consen 220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSG-------------------- 278 (353)
T ss_dssp TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-S--------------------
T ss_pred CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccC--------------------
Confidence 4433 22222222 2244444 444 3 335557776555543 33332 222111
Q ss_pred cCCCCCCCCCCcCCCCCcceEE-EEEEecCCCEEE-EecCC--CcEEEEEeCCC-CcceeeeeecCcccEEEEEEeecCC
Q 010296 405 HSENGNLNPGSYHSSSAYSWVS-SVTVCGGSDLAA-SGAGN--GSVRLWAIESE-TKDIQPLYNLPLVGFVNSLAFAKSG 479 (513)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~-~g~~d--g~v~vwd~~~~-~~~~~~~~~~~~~~~v~~v~~sp~~ 479 (513)
.-.|+ -+.++++++.|+ ++..+ +.-.||.+.-. ...++.+....... ..+.|||+|
T Consensus 279 -----------------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg 339 (353)
T PF00930_consen 279 -----------------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDG 339 (353)
T ss_dssp -----------------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTS
T ss_pred -----------------ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCC
Confidence 11153 467888776554 44442 34455554433 33444444322222 689999999
Q ss_pred CEEEEEecC
Q 010296 480 QFLIAGVGQ 488 (513)
Q Consensus 480 ~~l~~~~~~ 488 (513)
++++..++.
T Consensus 340 ~y~v~~~s~ 348 (353)
T PF00930_consen 340 KYYVDTYSG 348 (353)
T ss_dssp SEEEEEEES
T ss_pred CEEEEEEcC
Confidence 999877554
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.73 E-value=2.4e-07 Score=90.72 Aligned_cols=178 Identities=16% Similarity=0.254 Sum_probs=131.8
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
++..++.|+-...+..+|+.+.+..+.. .-....|+-|.. ++++|.+|...|+|.+-|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-------------------~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~ 204 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-------------------NVSASGVTIMRY--NNRNLFCGDTRGTVFLRDP 204 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-------------------eccCCceEEEEe--cCcEEEeecccceEEeecC
Confidence 3455677777777788888877665432 111222544444 5889999999999999999
Q ss_pred CCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---------CCcEEEEeCCCCceeEEeecccCCeEEEEeeC--CCeE
Q 010296 250 RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---------DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR--KERV 318 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 318 (513)
++.+.++++..|++.|..+.. .|+.|++|+. |.-|+|||++..+.+.-+.-+.++ .-+.|+| ..++
T Consensus 205 ~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 205 NSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRL 281 (1118)
T ss_pred CcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceE
Confidence 999999999999999987665 5788998874 566899999987766555433333 4556777 4688
Q ss_pred EEEeCCCcEEEEe---cCCCe--eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEe
Q 010296 319 LTVGRDRSMQLWK---VPEES--RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWS 371 (513)
Q Consensus 319 ~~~~~d~~i~iwd---~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd 371 (513)
++++..|...+-| +.... ...+......+..+.+++++. ++.|..+|.|.+|.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8999999999998 43332 223444455689999999987 77999999999998
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.71 E-value=4.8e-08 Score=58.73 Aligned_cols=39 Identities=26% Similarity=0.612 Sum_probs=36.7
Q ss_pred cceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEe
Q 010296 252 QEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290 (513)
Q Consensus 252 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 290 (513)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.67 E-value=2.4e-05 Score=70.12 Aligned_cols=268 Identities=12% Similarity=0.099 Sum_probs=157.6
Q ss_pred ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 010296 181 GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG----------LDRHIHLWDTR 250 (513)
Q Consensus 181 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~dg~i~vwd~~ 250 (513)
+.+.|+|..+++.+-.+ ..+-.-.+..+|+++.+++++ ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi---------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI---------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEE---------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEe---------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 57899998888866543 112233467899999888754 23469999999
Q ss_pred CcceeeeccCc---C----CCeEEEEEecCCCeEEEEe--CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEE
Q 010296 251 IQEHIQAFPGH---R----GPVSCLTFRQGTSELFSGS--FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTV 321 (513)
Q Consensus 251 ~~~~~~~~~~~---~----~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 321 (513)
+..+...+.-. . .....++++.++++++... --.+|.|.|+..++.+..+. ...+..+--.++..|.+.
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~iyP~~~~~F~~l 153 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLIYPSGNRGFSML 153 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEEEEEETTEEEEE
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEEEecCCCceEEE
Confidence 88776543211 1 1223468888999887653 34679999999998887764 222333333345678899
Q ss_pred eCCCcEEEEecCCC-eee-----EEecCCCCee-EEEeec-CCeEEEEeCCCCEEEEecCCCCeeEEee--cCCCcccCC
Q 010296 322 GRDRSMQLWKVPEE-SRL-----VFRAPASSLE-CCCFIS-NDEFLSGSDDGSIELWSLLRKKPVYIVK--NAHPLLDGL 391 (513)
Q Consensus 322 ~~d~~i~iwd~~~~-~~~-----~~~~~~~~v~-~~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~ 391 (513)
|.||.+....+... +.. .+.....++. .-++.. .+.++-.+..|.|+-.|+........-. ......
T Consensus 154 C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e--- 230 (342)
T PF06433_consen 154 CGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE--- 230 (342)
T ss_dssp ETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH---
T ss_pred ecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc---
Confidence 99999999888743 222 1111122222 223333 3467778889999998888765433221 100000
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec--------CCC--cEEEEEeCCCCcceeee
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA--------GNG--SVRLWAIESETKDIQPL 461 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--------~dg--~v~vwd~~~~~~~~~~~ 461 (513)
. ...+ .++.-.-+++++..+.|++-- .|+ .|.++|+.++ +.+
T Consensus 231 ---------~------~~~W---------rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv 282 (342)
T PF06433_consen 231 ---------K------ADGW---------RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRV 282 (342)
T ss_dssp ---------H------HTTE---------EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEE
T ss_pred ---------c------ccCc---------CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEE
Confidence 0 0000 011134567776555554431 122 4778888777 334
Q ss_pred eecCcccEEEEEEeecCCC-EEEEEecCCCcccccccCCCcc
Q 010296 462 YNLPLVGFVNSLAFAKSGQ-FLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 462 ~~~~~~~~v~~v~~sp~~~-~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
..++...++.+|+.+.+.+ +|++....++.|.+||..++..
T Consensus 283 ~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 283 ARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 4444556788999998877 5555546789999999888754
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.65 E-value=1.3e-05 Score=76.43 Aligned_cols=223 Identities=11% Similarity=0.050 Sum_probs=115.3
Q ss_pred hccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 156 LKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 156 ~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
....-....+.++|+|+++++++ +|...|+....... ...+.-..++|.+.+ .+
T Consensus 29 g~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~------------------------k~~G~g~~~vw~~~n-~y 82 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN------------------------KAFGSGLSFVWSSRN-RY 82 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE------------------------EEEEE-SEEEE-TSS-EE
T ss_pred CCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc------------------------cccCceeEEEEecCc-cE
Confidence 34455688999999999999955 67777777433222 123446678899855 46
Q ss_pred EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK 315 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (513)
|+-...+.|.|+.--.......++. ...+..|-. |..|+..+.+ .|.+||+.+++.+..+... +|..+.|+++
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 6666688899964223333233332 123344433 7777766654 8999999999999988633 3899999999
Q ss_pred CeEEEEeCCCcEEEEecCCC------------eeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 316 ERVLTVGRDRSMQLWKVPEE------------SRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 316 ~~~~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
+.+++...+..+.+++.... ...........|.+.+|..+ .|+-.+.. .|+. +..|..- ++..
T Consensus 156 g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~~-~i~~ 230 (443)
T PF04053_consen 156 GELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNGETG-IIAH 230 (443)
T ss_dssp SSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETTEEE-EEEE
T ss_pred CCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCcc-eEEE
Confidence 98887777888999876544 22222222445666666555 33322222 4444 2222211 1110
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~ 453 (513)
. ..++.=+.+.|..+.++....++.|..+.+..
T Consensus 231 l-------------------------------------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 231 L-------------------------------------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --------------------------------------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred c-------------------------------------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 0 11255666777667788888888888877653
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=9.6e-06 Score=82.48 Aligned_cols=261 Identities=11% Similarity=0.081 Sum_probs=148.1
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
.+.|.++.|.-+...++.+...|.|.+-|..+..... ...-...|.+++||||+.+++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence 4689999999999999999999999999877655332 12346679999999999999999
Q ss_pred eCCCcEEEEeCCCcceeeeccCc-----CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce-eEEeecccCCeEEEEe
Q 010296 239 GLDRHIHLWDTRIQEHIQAFPGH-----RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY-ISTLFGHQSEVLTIDC 312 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~ 312 (513)
+..+++.+-+ .+-.++...+-+ .+..-.+-|-...+.+ -|+. |.....+...... .... .....=++|.|
T Consensus 128 T~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~-gr~~~~~~~~~ek~~~~~-~~~~~~~~IsW 203 (1265)
T KOG1920|consen 128 TGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSE-GRQAARQKIEKEKALEQI-EQDDHKTSISW 203 (1265)
T ss_pred eCCcEEEEEe-ccccchhccccccccccccccceecccccceee-ecch-hhhcccccccccccccch-hhccCCceEEE
Confidence 8877776543 333333222111 1112222332211111 1110 1111111000000 0000 12223357899
Q ss_pred eCCCeEEEEe-----CC-CcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEE-E---EeCCCCEEEEecCCCCeeEEee
Q 010296 313 LRKERVLTVG-----RD-RSMQLWKVPEESRLVFRAPASSLECCCFISNDEFL-S---GSDDGSIELWSLLRKKPVYIVK 382 (513)
Q Consensus 313 ~~~~~~~~~~-----~d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~---~~~dg~i~iwd~~~~~~~~~~~ 382 (513)
-.+|.+++.+ .+ +.|++||-...-..........-.+++|-|.|.++ + -..++.|.+|..+. -....+.
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~ 282 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFV 282 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccc
Confidence 9999766552 34 89999997722111222333445678999988643 3 23566788887433 2222221
Q ss_pred cCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEE---ecCCCcEEEEEeCCCCccee
Q 010296 383 NAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAAS---GAGNGSVRLWAIESETKDIQ 459 (513)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~---g~~dg~v~vwd~~~~~~~~~ 459 (513)
... +.....|..++|+.++.+||+ ......|++|-+.+-.-.++
T Consensus 283 l~~---------------------------------p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLK 329 (1265)
T KOG1920|consen 283 LPF---------------------------------PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLK 329 (1265)
T ss_pred cCC---------------------------------cccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEE
Confidence 111 111222899999999999988 45555699999987643344
Q ss_pred eeeecCcccEEEEEEeecCCC
Q 010296 460 PLYNLPLVGFVNSLAFAKSGQ 480 (513)
Q Consensus 460 ~~~~~~~~~~v~~v~~sp~~~ 480 (513)
....++.... +.|+|--.
T Consensus 330 q~l~~~~~~~---~~W~p~~~ 347 (1265)
T KOG1920|consen 330 QELQFSQKAL---LMWDPVTE 347 (1265)
T ss_pred EEEecccccc---ccccCCCc
Confidence 4444333222 67777543
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=5e-05 Score=73.71 Aligned_cols=250 Identities=9% Similarity=0.050 Sum_probs=134.5
Q ss_pred EEEEeCCceEEEEeCCCCccccccCC--------------ChhhhccCCCCCCCCCCCCCcccEEEEEEc---CCCCEEE
Q 010296 174 GFSASKDGSILHWDVSSGKGVKYLWP--------------SEEVLKSHGAKDPQGRATKQSKHILALAVS---SDGRYLA 236 (513)
Q Consensus 174 l~t~~~dg~v~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~ 236 (513)
|.+|+..|.|+|+=+.+++.+..+.- +...+...........-..|.- .+.+. -||++|+
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp---~~s~t~g~ydGr~~f 145 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP---HMSFTDGTYDGRYLF 145 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC---cccccCCccceeEEE
Confidence 56899999999999999988776520 0011110000000000001111 12222 2678888
Q ss_pred EEeC-CCcEEEEeCCCcceeeeccC-cCCCeEEEE-------------------EecCCCeEE-EEeCCCcEEEEeCCCC
Q 010296 237 SGGL-DRHIHLWDTRIQEHIQAFPG-HRGPVSCLT-------------------FRQGTSELF-SGSFDRTVKIWNAEDR 294 (513)
Q Consensus 237 s~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~-------------------~~~~~~~l~-~~~~dg~i~iwd~~~~ 294 (513)
.-.. +..|-..++...++-..+.- ....+..+. +.|+|+.+. +.-..+.+.+.|..+.
T Consensus 146 indk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm 225 (635)
T PRK02888 146 INDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM 225 (635)
T ss_pred EecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence 7664 45566666554443222110 111222222 334555443 2223466778888877
Q ss_pred ceeEEeecccCCeEEEEeeCCCeEE-EEe----------------------------------------CCCcEEEEecC
Q 010296 295 AYISTLFGHQSEVLTIDCLRKERVL-TVG----------------------------------------RDRSMQLWKVP 333 (513)
Q Consensus 295 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~----------------------------------------~d~~i~iwd~~ 333 (513)
+...++.- .+....+.+++++.++ +++ .++.|.++|..
T Consensus 226 eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~ 304 (635)
T PRK02888 226 EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGR 304 (635)
T ss_pred eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECC
Confidence 66665542 2233455556655433 222 12457777777
Q ss_pred C-----CeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296 334 E-----ESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS 406 (513)
Q Consensus 334 ~-----~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 406 (513)
+ .....+..-......+.++|+|+ ++++..+.+|.|+|+.+.+....-+... ....+..
T Consensus 305 t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~-----------~~~vvae--- 370 (635)
T PRK02888 305 KAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP-----------RDAVVAE--- 370 (635)
T ss_pred ccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc-----------cceEEEe---
Confidence 6 33444555566778899999997 4467779999999998865422111000 0000000
Q ss_pred CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296 407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~ 453 (513)
..........+|.++|....|-.-|..|..|++..
T Consensus 371 ------------vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 ------------PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ------------eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 00001144678899998888888899999999876
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4.8e-05 Score=74.75 Aligned_cols=201 Identities=14% Similarity=0.242 Sum_probs=133.6
Q ss_pred CeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCccc-EEEEEEcCCCCEEEEEe
Q 010296 161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKH-ILALAVSSDGRYLASGG 239 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~ 239 (513)
.|+ +|++.+..++.|+.+|.|.+.+-. -+.+.. +..+... |..+....+..+|++.+
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~ 84 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILNSS-FQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVG 84 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEeccc-ceeeeh-------------------heecchhhhhHhhcccCceEEEEEe
Confidence 444 466788899999999988877632 111121 1233333 44444444446788776
Q ss_pred CCC-----cEEEEeCCCc------cee---eec----cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC----CCcee
Q 010296 240 LDR-----HIHLWDTRIQ------EHI---QAF----PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE----DRAYI 297 (513)
Q Consensus 240 ~dg-----~i~vwd~~~~------~~~---~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~ 297 (513)
.|+ .|+||+++.- .++ +.+ +....++.+++.+.+-+.+++|-.+|.|.++.-. .+...
T Consensus 85 Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~ 164 (933)
T KOG2114|consen 85 EDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ 164 (933)
T ss_pred ecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce
Confidence 654 5899998632 222 111 1235678999999998999999999999998532 12222
Q ss_pred EEeecccCCeEEEEeeCCCeE-EEEeCCCcEEEEecCCCe--eeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecC
Q 010296 298 STLFGHQSEVLTIDCLRKERV-LTVGRDRSMQLWKVPEES--RLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLL 373 (513)
Q Consensus 298 ~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~ 373 (513)
.-......+|+.+.+..++.. +.+.....|.+|.+.... ......+..++.|..+++... |++++. ..+.+|+..
T Consensus 165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd 243 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSD 243 (933)
T ss_pred eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCC
Confidence 223345678999999887744 455566789999998655 234667778888988888765 666654 459999988
Q ss_pred CCCeeEEeecC
Q 010296 374 RKKPVYIVKNA 384 (513)
Q Consensus 374 ~~~~~~~~~~~ 384 (513)
..++...+...
T Consensus 244 ~~~~cfaf~~g 254 (933)
T KOG2114|consen 244 GRGPCFAFEVG 254 (933)
T ss_pred CcceeeeecCC
Confidence 87777777633
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=3.3e-06 Score=82.30 Aligned_cols=109 Identities=10% Similarity=0.114 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCEEEEEeC----CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 223 ILALAVSSDGRYLASGGL----DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
-+-..|+|...+|++++. .|.|.||- .+|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 344689999999988763 58898884 6676544332 22235679999988788888889999999998887777
Q ss_pred EeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecC
Q 010296 299 TLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVP 333 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~ 333 (513)
....|+.+|..+.|+++| .++++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 777899999999999987 56688889999999875
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.47 E-value=2e-05 Score=80.29 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=138.3
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 299 (513)
...|.++.|..+...++.+...|.|.+-|..+.... ....-...|.+++|+|++..++..+..++|.+-. .+..++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 367999999999999999999999999988766432 2223567899999999999999888877776543 22222221
Q ss_pred eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--------EE---ecCCCCeeEEEeecCCeEEEE-----eC
Q 010296 300 LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--------VF---RAPASSLECCCFISNDEFLSG-----SD 363 (513)
Q Consensus 300 ~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~---~~~~~~v~~~~~~~~~~~~~~-----~~ 363 (513)
..- ...-.+.+.++.++....=.-+....++.. .. ......-+.++|-.+|.+++. ..
T Consensus 146 ~~L------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 146 KPL------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccc------ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 110 111122344454444332222222111110 00 012233456889999964432 23
Q ss_pred C-CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-
Q 010296 364 D-GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA- 441 (513)
Q Consensus 364 d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~- 441 (513)
+ ..|+|||.. +..-.+-. ...+.-.+++|-|.|.++++-.
T Consensus 220 ~~RkirV~drE-g~Lns~se-------------------------------------~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSE-------------------------------------PVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred CceeEEEeccc-chhhcccC-------------------------------------cccccccceeecCCCCeEeeeee
Confidence 4 789999976 33221111 1111256899999999988763
Q ss_pred --CCCcEEEEEeCCCCcceeeeeecCc-ccEEEEEEeecCCCEEEE--EecCCCccccccc
Q 010296 442 --GNGSVRLWAIESETKDIQPLYNLPL-VGFVNSLAFAKSGQFLIA--GVGQEPRLGRWGH 497 (513)
Q Consensus 442 --~dg~v~vwd~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~--~~~~dg~v~~W~~ 497 (513)
.|+.|.+|.-+... .-......+. ...|..++|+.++..|++ ++.....|++|.+
T Consensus 262 ~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred cCCCCcEEEEecCCcc-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 55679999865431 1111111222 334999999999999987 2244455999954
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.00033 Score=62.99 Aligned_cols=249 Identities=15% Similarity=0.166 Sum_probs=146.8
Q ss_pred eEEEEECCCCCeEEEEe----------CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 162 VTAVALSEDDSKGFSAS----------KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
.-.+.++|+++.+++++ ..-.|.+||..+......+.-+.. + +. ........++++.+
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k---------~--R~-~~~~~~~~~~ls~d 105 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK---------P--RA-QVVPYKNMFALSAD 105 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS------------B---BS--GGGEEE-TT
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc---------c--hh-eecccccceEEccC
Confidence 34467899999998754 245699999998876654310000 0 00 00112334688999
Q ss_pred CCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC-CCceeEEe----eccc
Q 010296 232 GRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE-DRAYISTL----FGHQ 304 (513)
Q Consensus 232 ~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~----~~~~ 304 (513)
++++++... ...|.|.|+..++.+..+... .+..+--+++ ..+.+.|.||.+.-..+. .|+...+. ....
T Consensus 106 gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~ 182 (342)
T PF06433_consen 106 GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDD 182 (342)
T ss_dssp SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTT
T ss_pred CcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCC
Confidence 998887643 467999999999988877632 2222222222 457888899999999887 45543221 1112
Q ss_pred CCeE-EEEeeC-CCeEEEEeCCCcEEEEecCCCeeeEEe---c----------CCCCeeEEEeecC-CeEEEE---eCCC
Q 010296 305 SEVL-TIDCLR-KERVLTVGRDRSMQLWKVPEESRLVFR---A----------PASSLECCCFISN-DEFLSG---SDDG 365 (513)
Q Consensus 305 ~~v~-~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~---~----------~~~~v~~~~~~~~-~~~~~~---~~dg 365 (513)
.++. .-.+.. .+.++..+..|.|+-.++......... . ..+...-+++++. ++|.+- +.+|
T Consensus 183 dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 183 DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred cccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence 2222 223333 457888899999999988776533111 0 0123344566653 343221 1122
Q ss_pred -------CEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EE
Q 010296 366 -------SIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LA 437 (513)
Q Consensus 366 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 437 (513)
.|-+||+.+++.+..+...++ +.+|.++.+.+ +|
T Consensus 263 sHKdpgteVWv~D~~t~krv~Ri~l~~~--------------------------------------~~Si~Vsqd~~P~L 304 (342)
T PF06433_consen 263 SHKDPGTEVWVYDLKTHKRVARIPLEHP--------------------------------------IDSIAVSQDDKPLL 304 (342)
T ss_dssp -TTS-EEEEEEEETTTTEEEEEEEEEEE--------------------------------------ESEEEEESSSS-EE
T ss_pred CccCCceEEEEEECCCCeEEEEEeCCCc--------------------------------------cceEEEccCCCcEE
Confidence 377789999999998875443 77999998775 66
Q ss_pred EEe-cCCCcEEEEEeCCCCcceeeeeec
Q 010296 438 ASG-AGNGSVRLWAIESETKDIQPLYNL 464 (513)
Q Consensus 438 ~~g-~~dg~v~vwd~~~~~~~~~~~~~~ 464 (513)
++. ..++.|.+||..++ +.+..+..+
T Consensus 305 ~~~~~~~~~l~v~D~~tG-k~~~~~~~l 331 (342)
T PF06433_consen 305 YALSAGDGTLDVYDAATG-KLVRSIEQL 331 (342)
T ss_dssp EEEETTTTEEEEEETTT---EEEEE---
T ss_pred EEEcCCCCeEEEEeCcCC-cEEeehhcc
Confidence 544 56799999999998 555555544
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.46 E-value=0.00025 Score=69.99 Aligned_cols=237 Identities=13% Similarity=0.160 Sum_probs=134.5
Q ss_pred CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-EEEEcCCCCEEEEEe---------CC
Q 010296 172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-ALAVSSDGRYLASGG---------LD 241 (513)
Q Consensus 172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~---------~d 241 (513)
..++.++.++.|.-+|..+++.+..+....... ....+. +..+. +..++.++ .+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~--------------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP--------------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC--------------cceEecCCCEEE--CCEEEEeccccccccCCCC
Confidence 578888889999999999999876542111000 000000 01111 23444443 36
Q ss_pred CcEEEEeCCCcceeeeccCcCC--------------------Ce-EEEEEecCCCeEEEEeCCC----------------
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRG--------------------PV-SCLTFRQGTSELFSGSFDR---------------- 284 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg---------------- 284 (513)
|.|..+|..+|+.+-.+..... .| ...++.+.+..++.++.++
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~ 254 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLY 254 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCc
Confidence 7899999999988766543211 11 1234455566777777665
Q ss_pred --cEEEEeCCCCceeEEeecccCCeE------EEEee----CCC----eEEEEeCCCcEEEEecCCCeeeEEecCCCCee
Q 010296 285 --TVKIWNAEDRAYISTLFGHQSEVL------TIDCL----RKE----RVLTVGRDRSMQLWKVPEESRLVFRAPASSLE 348 (513)
Q Consensus 285 --~i~iwd~~~~~~~~~~~~~~~~v~------~~~~~----~~~----~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 348 (513)
.|..+|+.+++.+..+........ ...+. -++ .+++++.+|.+..+|..+++.+...... ..
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~ 332 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQ 332 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--cc
Confidence 799999999998877642211111 00111 122 3557778999999999999877332211 11
Q ss_pred EEEeecCCeEEEE------------------eCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCC
Q 010296 349 CCCFISNDEFLSG------------------SDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGN 410 (513)
Q Consensus 349 ~~~~~~~~~~~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 410 (513)
.+...| +.++.+ ..+|.|.-.|+.+++.+-..........
T Consensus 333 ~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~--------------------- 390 (488)
T cd00216 333 PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDS--------------------- 390 (488)
T ss_pred ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccc---------------------
Confidence 123333 332221 2467888899999988776653210000
Q ss_pred CCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296 411 LNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK 456 (513)
Q Consensus 411 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~ 456 (513)
.. .........+.. .+.+|++++.||.|+.+|..++..
T Consensus 391 ~~------~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 391 WN------IGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cc------cCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCce
Confidence 00 000000112222 456889999999999999999843
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.46 E-value=0.00014 Score=71.63 Aligned_cols=197 Identities=11% Similarity=0.132 Sum_probs=116.1
Q ss_pred CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE--EEEEcCCCCEEEEEeCCCcEEEEe
Q 010296 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL--ALAVSSDGRYLASGGLDRHIHLWD 248 (513)
Q Consensus 171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~s~~~dg~i~vwd 248 (513)
+..++.++.++.|.-.|..+++.+..+...... ..+...+. .++.. ++..++.++.++.|+.+|
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~-------------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD 126 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPA-------------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALD 126 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCc-------------cccccccccCCcEEc-cCCeEEEecCCCeEEEEE
Confidence 455777888899999999999877644111000 00000000 11121 225778888899999999
Q ss_pred CCCcceeeeccCcCCC-----e-EEEEEecCCCeEEEEe---------CCCcEEEEeCCCCceeEEeecccCC-------
Q 010296 249 TRIQEHIQAFPGHRGP-----V-SCLTFRQGTSELFSGS---------FDRTVKIWNAEDRAYISTLFGHQSE------- 306 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~------- 306 (513)
..+|+.+-.+...... + .+..+. +..++.++ .+|.|..+|..+++.+..+......
T Consensus 127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 127 AETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 9999988766543221 1 111222 23455543 3688999999999988776432110
Q ss_pred -------------e-EEEEeeC-CCeEEEEeCCC------------------cEEEEecCCCeeeEEec-CCCCe-----
Q 010296 307 -------------V-LTIDCLR-KERVLTVGRDR------------------SMQLWKVPEESRLVFRA-PASSL----- 347 (513)
Q Consensus 307 -------------v-~~~~~~~-~~~~~~~~~d~------------------~i~iwd~~~~~~~~~~~-~~~~v----- 347 (513)
+ .+..+.+ .+.+++++.++ .|.-+|+.+++..-... .....
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccccc
Confidence 1 1123333 35666766554 68889999888773321 11100
Q ss_pred -eEEEee----cCC----eEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 348 -ECCCFI----SND----EFLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 348 -~~~~~~----~~~----~~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
....+. -++ .+++++.+|.+..+|..+++.+.....
T Consensus 285 ~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 285 PNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred CCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence 000111 122 266888999999999999999887653
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=0.00048 Score=58.38 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=72.2
Q ss_pred CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-EEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-ALAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
|.+++.|+..|.+++.++.+|.....+.. ...|. .....+++.++.+|+.|++.+..|.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~--------------------~~~vk~~a~~d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI--------------------LETVKVRAQCDFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee--------------------hhhhccceEEcCCCceEEEecCCCcEEEecc
Confidence 56789999999999999999977654411 11111 1234567999999999999999999
Q ss_pred CCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 250 RIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
.+..++...+...+...+-+..|....|+.+...|.|.--..+..
T Consensus 123 ~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 123 KTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 999998887754444444556664445666666666655554443
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.43 E-value=4.7e-05 Score=71.75 Aligned_cols=223 Identities=16% Similarity=0.151 Sum_probs=124.6
Q ss_pred CeEEEEECCCCCeEEEEeCCceEEEEeCCCCcccc-ccCC---------------ChhhhccCC--------CCCCCCCC
Q 010296 161 SVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVK-YLWP---------------SEEVLKSHG--------AKDPQGRA 216 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~---------------~~~~~~~~~--------~~~~~~~~ 216 (513)
.|++|.|.++..-|++|...|.|.||.+...+... .-.+ ...+..... .-.|...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999999876543321 0000 000000000 01112223
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeee--ccC------cCCCeEEEEEec-----CC---CeEEEE
Q 010296 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQA--FPG------HRGPVSCLTFRQ-----GT---SELFSG 280 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~l~~~ 280 (513)
....++|++++.| +=.++|.|..+|.+.|.|++....+.. +.. ....|+++.|.. ++ -.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3447889999998 455999999999999999987776654 111 334688888863 22 458899
Q ss_pred eCCCcEEEEeCCC---Cce----eEEeecccCCeEEEEee-CC---------------------CeEEEEeCCCcEEEEe
Q 010296 281 SFDRTVKIWNAED---RAY----ISTLFGHQSEVLTIDCL-RK---------------------ERVLTVGRDRSMQLWK 331 (513)
Q Consensus 281 ~~dg~i~iwd~~~---~~~----~~~~~~~~~~v~~~~~~-~~---------------------~~~~~~~~d~~i~iwd 331 (513)
+..|.+.+|.+.- +.. ......+.++|..+... .+ ..++++.....++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998741 222 11222355666666532 11 1266667788999999
Q ss_pred cCCCeeeEEecCC-CCeeEEEee-----cCCe-EEEEeCCCCEEEEecCCCCeeEEeecC
Q 010296 332 VPEESRLVFRAPA-SSLECCCFI-----SNDE-FLSGSDDGSIELWSLLRKKPVYIVKNA 384 (513)
Q Consensus 332 ~~~~~~~~~~~~~-~~v~~~~~~-----~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (513)
..+.+........ .....+++. ..+. |++-..+|.|++|.+...+.+..+...
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 8876655322211 222234443 1233 778889999999999999998887753
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0001 Score=72.56 Aligned_cols=190 Identities=14% Similarity=0.152 Sum_probs=123.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC-eEEEEEecCCCeEEEEeCCC-----cEEEEeCCCC------
Q 010296 227 AVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP-VSCLTFRQGTSELFSGSFDR-----TVKIWNAEDR------ 294 (513)
Q Consensus 227 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~------ 294 (513)
+|++++..+|.|+.+|.|.+++ ++-+.++.++.+... |..+.......+|++.+.|+ .|+||++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4677889999999999998887 344555777777776 55555444446788776654 4899998642
Q ss_pred cee--EEeec-----ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCC-----CeeeEEecCCCCeeEEEeecCCe-EEE
Q 010296 295 AYI--STLFG-----HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPE-----ESRLVFRAPASSLECCCFISNDE-FLS 360 (513)
Q Consensus 295 ~~~--~~~~~-----~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~~~ 360 (513)
.++ ..+.+ ...++.+++.+.+-..+ +|-.+|.|..+.-.- .+.........+|+.+++..++. ++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 12222 24567888888775444 666788888885321 11223344567899999988885 233
Q ss_pred EeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEe
Q 010296 361 GSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASG 440 (513)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g 440 (513)
......|.+|.+....|...... .+...+.|.++++...-|+++
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld------------------------------------~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLD------------------------------------NNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred EEecceeEEEEecCCCcceeeec------------------------------------cCCccceeeecCCCCccEEEe
Confidence 44456789999884443333222 222338888888866646655
Q ss_pred cCCCcEEEEEeCCC
Q 010296 441 AGNGSVRLWAIESE 454 (513)
Q Consensus 441 ~~dg~v~vwd~~~~ 454 (513)
+.. .|.+|+....
T Consensus 233 ~~e-~l~fY~sd~~ 245 (933)
T KOG2114|consen 233 GSE-FLYFYDSDGR 245 (933)
T ss_pred cCc-eEEEEcCCCc
Confidence 544 6999998765
No 336
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.35 E-value=0.00017 Score=72.83 Aligned_cols=132 Identities=12% Similarity=0.052 Sum_probs=94.9
Q ss_pred CCCcEEEEeCCCCceeEEeecccCC-eEEEEeeC------CCeEEEEeCCCcEEEEecCCCe--eeE----EecCCCCee
Q 010296 282 FDRTVKIWNAEDRAYISTLFGHQSE-VLTIDCLR------KERVLTVGRDRSMQLWKVPEES--RLV----FRAPASSLE 348 (513)
Q Consensus 282 ~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~------~~~~~~~~~d~~i~iwd~~~~~--~~~----~~~~~~~v~ 348 (513)
....|+-.|+..|+.+..+..+... |..++-.. +...+.|-.++.|..||.+-.. .+. .........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4577999999999999988766644 55554321 2356778889999999998643 221 123445688
Q ss_pred EEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEE
Q 010296 349 CCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSV 428 (513)
Q Consensus 349 ~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 428 (513)
|++...+|++|+|+.+|.||+||- .++.-.+.- ++-..+|..|
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~l------------------------------------p~lG~pI~~i 624 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTAL------------------------------------PGLGDPIIGI 624 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecc-cchhhhhcC------------------------------------CCCCCCeeEE
Confidence 999999999999999999999993 222111111 2333559999
Q ss_pred EEecCCCEEEEecCCCcEEEEEe
Q 010296 429 TVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 429 ~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
..+.||++|++.+.. .|.|++.
T Consensus 625 Dvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 625 DVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EecCCCcEEEEeecc-eEEEEEE
Confidence 999999998877754 7888886
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=0.00038 Score=66.17 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCC
Q 010296 420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
...+.|.+++++|+...|+.|+.||.|.+||...+.. .... ..-.++.++|+|+|.++++| +..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~k--a~~~P~~iaWHp~gai~~V~-s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAK--AEFIPTLIAWHPDGAIFVVG-SEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeee--ecccceEEEEcCCCcEEEEE-cCCceEEEEEeec
Confidence 3344599999999999999999999999999987622 2222 33457889999999999999 9999999999754
Q ss_pred C
Q 010296 500 A 500 (513)
Q Consensus 500 ~ 500 (513)
+
T Consensus 331 s 331 (545)
T PF11768_consen 331 S 331 (545)
T ss_pred C
Confidence 3
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.4e-05 Score=69.98 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=77.9
Q ss_pred EEEEeCCCcceeeeccCcCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC--eEEE
Q 010296 244 IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--RVLT 320 (513)
Q Consensus 244 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~ 320 (513)
+++.+..+.+....+.+|...|..++|+|..+ ++..++.+..|+|.|+.+...+..+..+ ..+++++|..+. .+.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 77777666666777888999999999999877 6778999999999999999888888766 889999998765 4457
Q ss_pred EeCCCcEEEEecCCCee
Q 010296 321 VGRDRSMQLWKVPEESR 337 (513)
Q Consensus 321 ~~~d~~i~iwd~~~~~~ 337 (513)
|-..|.|.+||++....
T Consensus 254 Gl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eccCceEEEEEccCCCc
Confidence 77899999999987653
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.32 E-value=0.00068 Score=63.20 Aligned_cols=214 Identities=15% Similarity=0.231 Sum_probs=127.2
Q ss_pred CcEEEEeCCCcceeeeccC-cCCCeEEEEE---ecC----CCeEEEEeC----------CCcEEEEeCCCC----ceeEE
Q 010296 242 RHIHLWDTRIQEHIQAFPG-HRGPVSCLTF---RQG----TSELFSGSF----------DRTVKIWNAEDR----AYIST 299 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~~----~~~l~~~~~----------dg~i~iwd~~~~----~~~~~ 299 (513)
..|++.|..+.+.+..+.- ....+.+++. ..+ ..+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888887777665543 2234454443 222 456776643 288999999884 12222
Q ss_pred e--ecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe-eeE--EecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCC
Q 010296 300 L--FGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES-RLV--FRAPASSLECCCFISNDEFLSGSDDGSIELWSLLR 374 (513)
Q Consensus 300 ~--~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~--~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~ 374 (513)
+ ....++|++++.. +++ +.++..+.|++|++.... ... +......+.++....+ .+++|..-..+.++.+..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEc
Confidence 1 3357889999877 555 545556899999998777 442 2223335556655533 788888888888886544
Q ss_pred -CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCC
Q 010296 375 -KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~ 453 (513)
...+..+.. .....+++++.|-++++.++++..+|.|.++....
T Consensus 159 ~~~~l~~va~-----------------------------------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 159 ENNKLILVAR-----------------------------------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TTE-EEEEEE-----------------------------------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCEEEEEEe-----------------------------------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 222333322 12234589999987778999999999999999874
Q ss_pred C------Cc-ceeeeeecCcccEEEEE---EeecC--CC------EEEEEecCCCcccc
Q 010296 454 E------TK-DIQPLYNLPLVGFVNSL---AFAKS--GQ------FLIAGVGQEPRLGR 494 (513)
Q Consensus 454 ~------~~-~~~~~~~~~~~~~v~~v---~~sp~--~~------~l~~~~~~dg~v~~ 494 (513)
. .. .+.....+.....|+++ .+.|. +. .++.+ +.+|.|..
T Consensus 204 ~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~-T~~G~Ig~ 261 (321)
T PF03178_consen 204 EIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYG-TVDGSIGV 261 (321)
T ss_dssp S-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEE-ETTS-EEE
T ss_pred CCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEE-ecCCEEEE
Confidence 2 12 34445555456778887 65562 22 24455 78888763
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=8.2e-05 Score=72.30 Aligned_cols=181 Identities=9% Similarity=0.009 Sum_probs=109.4
Q ss_pred ECCCCCeEEE-EeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC----
Q 010296 167 LSEDDSKGFS-ASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD---- 241 (513)
Q Consensus 167 ~s~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---- 241 (513)
++|||+.+.. .-..+.+.+.|..+.+....+. -......++++|+|+++++.+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~--------------------Vdgnpd~v~~spdGk~afvTsyNsE~G 259 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--------------------VDGNLDNVDTDYDGKYAFSTCYNSEEG 259 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEE--------------------eCCCcccceECCCCCEEEEeccCcccC
Confidence 4556665542 2334667777777666554430 11134567899999999887642
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC----C-ceeEEeecccCCeEEEEeeCCC
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED----R-AYISTLFGHQSEVLTIDCLRKE 316 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~v~~~~~~~~~ 316 (513)
.++..-+......+..+... .+ .++.++|++...+ ++.|.+.|..+ + ..+..+. -......+.++|+|
T Consensus 260 ~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDG 332 (635)
T PRK02888 260 VTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDG 332 (635)
T ss_pred cceeeeccccCceEEEEchH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCC
Confidence 22333322221111111100 00 1234577776653 67899999988 3 4444443 56667899999999
Q ss_pred eEE--EEeCCCcEEEEecCCCee------------eEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296 317 RVL--TVGRDRSMQLWKVPEESR------------LVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 317 ~~~--~~~~d~~i~iwd~~~~~~------------~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~ 374 (513)
+.+ ++..+.+|.++|+.+... .............+|.++|. +.+-.-|..|..|++..
T Consensus 333 kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 333 KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 655 444689999999987542 11122233455678888876 66778899999999876
No 341
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.28 E-value=0.0033 Score=57.83 Aligned_cols=301 Identities=12% Similarity=0.084 Sum_probs=138.3
Q ss_pred eeEEeeccccCCCcccchhhhhccCCCeEEE-----EECCCCCeEEEEe-CCc--eEEEEeCCCCccccccCCChhhhcc
Q 010296 135 VRRVIASRVQKPEATDEFRVLLKHRQSVTAV-----ALSEDDSKGFSAS-KDG--SILHWDVSSGKGVKYLWPSEEVLKS 206 (513)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-----~~s~~~~~l~t~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~ 206 (513)
..+.--....++.+...+..|..+...-..+ +|.++|+.|+.++ .+| .+.+.|+.+++..+..
T Consensus 6 ~~~~~~~~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT--------- 76 (386)
T PF14583_consen 6 TIPLEFKTWIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT--------- 76 (386)
T ss_dssp EEE--EEEEE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------
T ss_pred EeccceeEEeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc---------
Confidence 3333344455666666666666544433333 5677887766554 444 5667788888766522
Q ss_pred CCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEe--cCCCeEEEEe---
Q 010296 207 HGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR--QGTSELFSGS--- 281 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~--- 281 (513)
.+.........++|+.+.++-......|+-.|+.+.+....+......+-...|. .++..++..-
T Consensus 77 ----------dg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~ 146 (386)
T PF14583_consen 77 ----------DGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISR 146 (386)
T ss_dssp -----------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEG
T ss_pred ----------cCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEee
Confidence 0001112235667888887766556789999999988766665555555556664 3455544221
Q ss_pred -------------------CCCcEEEEeCCCCceeEEeecccCCeEEEEeeCC-CeEEEEeC----CC-cEEEEecCCC-
Q 010296 282 -------------------FDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRK-ERVLTVGR----DR-SMQLWKVPEE- 335 (513)
Q Consensus 282 -------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~----d~-~i~iwd~~~~- 335 (513)
-...|.-.|+.+++....+. ....+..+.|+|. ..+++-|. +. .-+||-+.+.
T Consensus 147 ~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 147 EDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp GG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred hhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 11346666788876544443 5667788899994 35554332 22 1355655432
Q ss_pred -eeeEEecC--CCCeeEEEeecCCe-EE--EEe---CCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296 336 -SRLVFRAP--ASSLECCCFISNDE-FL--SGS---DDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS 406 (513)
Q Consensus 336 -~~~~~~~~--~~~v~~~~~~~~~~-~~--~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 406 (513)
.......+ ...+..=-|.++|. +. ... .+..|.-+++.+++.......
T Consensus 226 ~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----------------------- 282 (386)
T PF14583_consen 226 SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----------------------- 282 (386)
T ss_dssp ---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------------------
T ss_pred CcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-----------------------
Confidence 22222222 12223335777775 22 222 233455667777654332221
Q ss_pred CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC----------------CcEEEEEeCCCCcceeeeeec------
Q 010296 407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN----------------GSVRLWAIESETKDIQPLYNL------ 464 (513)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d----------------g~v~vwd~~~~~~~~~~~~~~------ 464 (513)
.+...+-.+++|++++-=+.| -.|+++++..+. ...+...
T Consensus 283 ----------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~--~~~l~~h~~sw~v 344 (386)
T PF14583_consen 283 ----------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR--FRKLARHDTSWKV 344 (386)
T ss_dssp -----------------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE--EEEEEE-------
T ss_pred ----------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc--eeeeeeccCccee
Confidence 014455567788777643333 146667776552 1111111
Q ss_pred -Ccc--cEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 465 -PLV--GFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 465 -~~~--~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.+. -.=..+.|+|||++++-.+...|...||-
T Consensus 345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 345 LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 000 01245799999999988877777766663
No 342
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.27 E-value=0.0015 Score=59.47 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=90.3
Q ss_pred CCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010296 169 EDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWD 248 (513)
Q Consensus 169 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd 248 (513)
..++.|+.|+.+| |.++++........+ .+...|..+...|.-+.|++-+ |+.+++++
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--------------------eecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 3578899999998 899998332222211 2333499999999877777766 59999999
Q ss_pred CCCcceeeec--------------cCcCCCeEEEE--EecCCCeEEEEeCCCcEEEEeCCCC-----ceeEEeecccCCe
Q 010296 249 TRIQEHIQAF--------------PGHRGPVSCLT--FRQGTSELFSGSFDRTVKIWNAEDR-----AYISTLFGHQSEV 307 (513)
Q Consensus 249 ~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v 307 (513)
+..-...... ......+..++ -...+...+.......|.+|..... +....+. ....+
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~ 141 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPP 141 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCc
Confidence 8765443311 11223344444 1223444444445568888887653 3444444 45788
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE
Q 010296 308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRLV 339 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 339 (513)
.++.|. ++.++.+. .....+.|+.++....
T Consensus 142 ~~i~~~-~~~i~v~~-~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 142 SSIAFL-GNKICVGT-SKGFYLIDLNTGSPSE 171 (275)
T ss_pred EEEEEe-CCEEEEEe-CCceEEEecCCCCceE
Confidence 999998 33444444 5568888988665543
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.27 E-value=2.9e-07 Score=86.69 Aligned_cols=200 Identities=18% Similarity=0.267 Sum_probs=126.9
Q ss_pred ccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecC-CCeEEEEe----CCCcEEEEeC
Q 010296 221 KHILALAVSSDG--RYLASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQG-TSELFSGS----FDRTVKIWNA 291 (513)
Q Consensus 221 ~~v~~~~~s~~~--~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~----~dg~i~iwd~ 291 (513)
..+.|++++-+. ..+++|..+|.|.+-.++...- ....++|..++++++|++- .+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346777776543 4788899999999988764432 2345668889999999884 45565553 3668999999
Q ss_pred CCC--cee--EEeec-ccCCeEEEEeeCCCeEE-EEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeec-CCeEEEEeCC
Q 010296 292 EDR--AYI--STLFG-HQSEVLTIDCLRKERVL-TVGRDRSMQLWKVPEESRLVFRAPASSLECCCFIS-NDEFLSGSDD 364 (513)
Q Consensus 292 ~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d 364 (513)
.++ .+. ..+.+ ......+++|..+.+++ +|.....+.++|++.............+..+.+.| ...+++...|
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~d 216 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSD 216 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecccc
Confidence 876 221 11222 33345688888777766 66677799999998443322222233455566777 4446677779
Q ss_pred CCEEEEec-CCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCC-EEEEec
Q 010296 365 GSIELWSL-LRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSD-LAASGA 441 (513)
Q Consensus 365 g~i~iwd~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~ 441 (513)
|.|.+||. ++- .++..+.... ...+..+..++|+|... ++++..
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~---------------------------------N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNE---------------------------------NKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred CceeeccchhhhccHHHHHhhCC---------------------------------CCcccceeeEEeccCCcchhhhhc
Confidence 99999993 322 2222221111 11223488999999542 455555
Q ss_pred -CCCcEEEEEeCC
Q 010296 442 -GNGSVRLWAIES 453 (513)
Q Consensus 442 -~dg~v~vwd~~~ 453 (513)
..++|++|++..
T Consensus 264 RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 264 RDSITIRLYDICV 276 (783)
T ss_pred cCcceEEEecccc
Confidence 457899999864
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.26 E-value=1.5e-05 Score=75.39 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=63.6
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
.+...|.|++++|+...|+.|+.||.|.+||...+.... ....-.++.++|+|+|..|+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEEEcCCCcEEE
Confidence 577899999999999999999999999999987664332 12344578899999999999
Q ss_pred EEeCCCcEEEEeCCCc
Q 010296 237 SGGLDRHIHLWDTRIQ 252 (513)
Q Consensus 237 s~~~dg~i~vwd~~~~ 252 (513)
+|+..|.+.+||+.-.
T Consensus 316 V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 316 VGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCceEEEEEeecC
Confidence 9999999999997543
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.20 E-value=0.00098 Score=63.01 Aligned_cols=225 Identities=16% Similarity=0.179 Sum_probs=128.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce-------------------------------------------eeec
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEH-------------------------------------------IQAF 258 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-------------------------------------------~~~~ 258 (513)
.|+.+.|++....|++|...|.|.||.+...+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 389999999999999999999999987532111 1112
Q ss_pred cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee--c------ccCCeEEEEeeC-----CC----eEEEE
Q 010296 259 PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF--G------HQSEVLTIDCLR-----KE----RVLTV 321 (513)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~----~~~~~ 321 (513)
....++|++++.+ +-.+++.|..+|.+.|.|++....+..-. . ....++++.|.- ++ .+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346889999997 45689999999999999998887766532 1 233577787752 33 46688
Q ss_pred eCCCcEEEEecCC--Ceee------EEecCCCCeeEEEee-c-----------------CC----eEEEEeCCCCEEEEe
Q 010296 322 GRDRSMQLWKVPE--ESRL------VFRAPASSLECCCFI-S-----------------ND----EFLSGSDDGSIELWS 371 (513)
Q Consensus 322 ~~d~~i~iwd~~~--~~~~------~~~~~~~~v~~~~~~-~-----------------~~----~~~~~~~dg~i~iwd 371 (513)
...|.+.+|.+.- +... ....+...+..+... . .+ .+++...+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 8999999998742 1111 112344455444321 1 11 256666678899999
Q ss_pred cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEE-----ecCCCEEEEecCCCcE
Q 010296 372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTV-----CGGSDLAASGAGNGSV 446 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~~g~~dg~v 446 (513)
..+.+...... ..+. ....+++ ...+..|++-..+|.|
T Consensus 242 ~~~~k~~~K~~-~~~~------------------------------------~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 242 PPKSKGAHKSF-DDPF------------------------------------LCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp TT---EEEEE--SS-E------------------------------------EEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred CCCCcccceee-cccc------------------------------------ccceEEEEeecccCCceEEEEEECCCcE
Confidence 98887766544 1111 0333344 2356678888899999
Q ss_pred EEEEeCCCCcceeeeeecC--cccEEEEEEeecCCCEEEEE
Q 010296 447 RLWAIESETKDIQPLYNLP--LVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 447 ~vwd~~~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~~~ 485 (513)
++|.+... +.+..+.... ....+....|+++|..++..
T Consensus 285 ~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 285 RIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp EEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred EEEECCCc-hHhhcccCCCccccccccccEECCCCCEEEEe
Confidence 99999886 3333332211 22335567789999987766
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.16 E-value=0.00044 Score=66.24 Aligned_cols=219 Identities=10% Similarity=0.066 Sum_probs=111.9
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST 299 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 299 (513)
......+.++|+|+++++++ +|...|+.....+... .+....++|.+.+ .+++-...+.|.|+.--.......
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence 33477899999999999866 7777788743333222 2334568888844 466666688899963222222223
Q ss_pred eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC---
Q 010296 300 LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK--- 376 (513)
Q Consensus 300 ~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--- 376 (513)
+.. ...+..+-. |.++....++.|.+||+.+++.+...... +|..+.|++++.+++-..+..+.|++.....
T Consensus 105 i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 105 IKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA 179 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred EcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence 321 122333332 77776666679999999998777554433 3899999999986666567788888755430
Q ss_pred --------eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEE
Q 010296 377 --------PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRL 448 (513)
Q Consensus 377 --------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~v 448 (513)
....+.. ....|.+.+|..+ -+++|.. . .|+.
T Consensus 180 ~~~~g~e~~f~~~~E-------------------------------------~~~~IkSg~W~~d-~fiYtT~-~-~lkY 219 (443)
T PF04053_consen 180 IPEEGVEDAFELIHE-------------------------------------ISERIKSGCWVED-CFIYTTS-N-HLKY 219 (443)
T ss_dssp BTTTB-GGGEEEEEE-------------------------------------E-S--SEEEEETT-EEEEE-T-T-EEEE
T ss_pred ccccCchhceEEEEE-------------------------------------ecceeEEEEEEcC-EEEEEcC-C-eEEE
Confidence 1111110 0112778888776 3344433 3 5665
Q ss_pred EEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 449 WAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 449 wd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
+..+ ....+..+ ..++.=+...|....+... ..++.|..+.+
T Consensus 220 --l~~G--e~~~i~~l--d~~~yllgy~~~~~~ly~~-Dr~~~v~~~~l 261 (443)
T PF04053_consen 220 --LVNG--ETGIIAHL--DKPLYLLGYLPKENRLYLI-DRDGNVISYEL 261 (443)
T ss_dssp --EETT--EEEEEEE---SS--EEEEEETTTTEEEEE--TT--EEEEE-
T ss_pred --EEcC--CcceEEEc--CCceEEEEEEccCCEEEEE-ECCCCEEEEEE
Confidence 4444 12223332 3455666667766666666 66766665543
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.12 E-value=0.0087 Score=58.15 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=111.4
Q ss_pred CeEEEEECCCCCeEEEE-eCC----ceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEE
Q 010296 161 SVTAVALSEDDSKGFSA-SKD----GSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYL 235 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~-~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 235 (513)
.+..+++||++++||.+ +.. .+|+++|+.+++.+... -.......+.|.++++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--------------------i~~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--------------------IENPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--------------------EEEEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--------------------ccccccceEEEeCCCCEE
Confidence 34467899999999854 333 45999999998765421 001112239999998887
Q ss_pred EEEeCCC-----------cEEEEeCCCccee--eeccCcCCC--eEEEEEecCCCeEEEEeC---C-CcEEEEeCCCC--
Q 010296 236 ASGGLDR-----------HIHLWDTRIQEHI--QAFPGHRGP--VSCLTFRQGTSELFSGSF---D-RTVKIWNAEDR-- 294 (513)
Q Consensus 236 ~s~~~dg-----------~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~-- 294 (513)
+....+. .|+.|.+.+...- ..+...... ...+..++++++|+..+. + ..|++.++..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 7665333 3788887766432 344433332 567889999999774332 2 45888888774
Q ss_pred --ceeEEeecccCCeEEEEeeCCCeEEEEe----CCCcEEEEecCCCee----eEEecCCC--CeeEEEeecCCeEEEEe
Q 010296 295 --AYISTLFGHQSEVLTIDCLRKERVLTVG----RDRSMQLWKVPEESR----LVFRAPAS--SLECCCFISNDEFLSGS 362 (513)
Q Consensus 295 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~----~~~~~~~~--~v~~~~~~~~~~~~~~~ 362 (513)
.....+......+....-+.++.|+..+ ..+.|...++..... ..+..+.. .+..+....+..++...
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 2333333333344333333355554333 246677777766542 23344433 34455544443344544
Q ss_pred CCC--CEEEEecCCCCeeEEee
Q 010296 363 DDG--SIELWSLLRKKPVYIVK 382 (513)
Q Consensus 363 ~dg--~i~iwd~~~~~~~~~~~ 382 (513)
.++ .|+++++..+.....+.
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEE
T ss_pred ECCccEEEEEECCCCcEEeeec
Confidence 444 57788887444444443
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0027 Score=55.66 Aligned_cols=198 Identities=11% Similarity=0.102 Sum_probs=111.1
Q ss_pred hhhccCCCeEEEEECCCCC-eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC
Q 010296 154 VLLKHRQSVTAVALSEDDS-KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG 232 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 232 (513)
.+.+-...+..|+|+|+.. ++++....+.|..++.. ++.+..+ .+.+ ....-.|++..++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-----------------~l~g-~~D~EgI~y~g~~ 76 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-----------------PLDG-FGDYEGITYLGNG 76 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-----------------E-SS--SSEEEEEE-STT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-----------------eCCC-CCCceeEEEECCC
Confidence 4455566799999999765 55566778888888874 6666654 1122 3457788888788
Q ss_pred CEEEEEeCCCcEEEEeCCCcc------eeeec-----cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCC---CceeE
Q 010296 233 RYLASGGLDRHIHLWDTRIQE------HIQAF-----PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAED---RAYIS 298 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~~~~------~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~ 298 (513)
.++++.-.++.+.++++.... ....+ ..+...+..++|.+.++.|+.+-......+|.+.. ...+.
T Consensus 77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~ 156 (248)
T PF06977_consen 77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF 156 (248)
T ss_dssp EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence 777766668899999873321 11111 12456789999999988888887777777776654 21111
Q ss_pred Ee--------ecccCCeEEEEeeCC-CeEE-EEeCCCcEEEEecCCCeeeEEecC---------CCCeeEEEeecCCeEE
Q 010296 299 TL--------FGHQSEVLTIDCLRK-ERVL-TVGRDRSMQLWKVPEESRLVFRAP---------ASSLECCCFISNDEFL 359 (513)
Q Consensus 299 ~~--------~~~~~~v~~~~~~~~-~~~~-~~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~ 359 (513)
.. ......+.++.++|. +.++ .......|..+|............ ......++|.++|.|.
T Consensus 157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 11 113345788889885 4555 455678888888444322222211 1356789999999887
Q ss_pred EEeCCCCEEEE
Q 010296 360 SGSDDGSIELW 370 (513)
Q Consensus 360 ~~~~dg~i~iw 370 (513)
..+.-+..++|
T Consensus 237 IvsEpNlfy~f 247 (248)
T PF06977_consen 237 IVSEPNLFYRF 247 (248)
T ss_dssp EEETTTEEEEE
T ss_pred EEcCCceEEEe
Confidence 77776665554
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.07 E-value=0.002 Score=61.83 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=46.3
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 226 LAVSSDGRYLASGGLD----------R-HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 226 ~~~s~~~~~l~s~~~d----------g-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
++.+|.|..+|....+ . .|.||+. .|+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 4455555555554332 2 5999985 46666665544489999999885 45667778999999998643
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.014 Score=57.95 Aligned_cols=199 Identities=9% Similarity=0.028 Sum_probs=109.0
Q ss_pred CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010296 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTR 250 (513)
Q Consensus 171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~ 250 (513)
+..|++++.++.|.-.|..+++.+..+....... ..+ .......-..+++. +..++.++.++.|.-+|..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~-----~~~---~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~ 138 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD-----VIP---VMCCDVVNRGVALY--DGKVFFGTLDARLVALDAK 138 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcc-----ccc---ccccccccccceEE--CCEEEEEcCCCEEEEEECC
Confidence 4567778888899999999998876542110000 000 00000000112222 3467778889999999999
Q ss_pred CcceeeeccCc--C--CCeEEEEEecCCCeEEEEe------CCCcEEEEeCCCCceeEEeecccC---------------
Q 010296 251 IQEHIQAFPGH--R--GPVSCLTFRQGTSELFSGS------FDRTVKIWNAEDRAYISTLFGHQS--------------- 305 (513)
Q Consensus 251 ~~~~~~~~~~~--~--~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~--------------- 305 (513)
+|+.+-..... . ..+.+--.--++ .++++. .+|.|..+|..+|+.+..+..-..
T Consensus 139 TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~ 217 (527)
T TIGR03075 139 TGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGE 217 (527)
T ss_pred CCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccc
Confidence 99987665421 1 111111111133 455443 268999999999988766532111
Q ss_pred ----------------Ce-EEEEeeCC-CeEEEEe-C----CC-----------cEEEEecCCCeee-EEecCCC-----
Q 010296 306 ----------------EV-LTIDCLRK-ERVLTVG-R----DR-----------SMQLWKVPEESRL-VFRAPAS----- 345 (513)
Q Consensus 306 ----------------~v-~~~~~~~~-~~~~~~~-~----d~-----------~i~iwd~~~~~~~-~~~~~~~----- 345 (513)
.+ ..+++.+. +.++.+. . .+ +|.-.|+++++.. .++....
T Consensus 218 ~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 218 PGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY 297 (527)
T ss_pred cccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence 11 12234443 3333332 1 11 5666777887766 2222111
Q ss_pred ----CeeEEEeecCCe----EEEEeCCCCEEEEecCCCCeeEE
Q 010296 346 ----SLECCCFISNDE----FLSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 346 ----~v~~~~~~~~~~----~~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
...-+.+..+|+ ++.+..+|.+++.|..+++++..
T Consensus 298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~ 340 (527)
T TIGR03075 298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSA 340 (527)
T ss_pred cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceecc
Confidence 111122223443 56899999999999999998743
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.0001 Score=70.92 Aligned_cols=116 Identities=12% Similarity=0.161 Sum_probs=88.0
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceee-eccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQ-AFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI 297 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 297 (513)
|...|.--++...+++++.|+.-|.+++|+-..++... ...+..+.+..+..+++..+++.|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44456666677789999999999999999977665432 22234455667788888888999999999999988764321
Q ss_pred -----EEe-ecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCC
Q 010296 298 -----STL-FGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPE 334 (513)
Q Consensus 298 -----~~~-~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~ 334 (513)
... ..|...|++++|++++ ++++|...|.|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 2367899999999998 677999999999888776
No 352
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.01 E-value=0.0024 Score=60.24 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=56.0
Q ss_pred CcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcc--cEEEEEEeec--------------CCCEEEE
Q 010296 421 AYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLV--GFVNSLAFAK--------------SGQFLIA 484 (513)
Q Consensus 421 ~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~--~~v~~v~~sp--------------~~~~l~~ 484 (513)
....+.+++.+|.+++.|+...=|.|.|+|+..+ ..+...+.+... +.+....-.. ...+|+.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3455899999999999999877899999999987 444444443211 1111111111 1245666
Q ss_pred EecCCCcccccccCCCcccce
Q 010296 485 GVGQEPRLGRWGHLPAARNGV 505 (513)
Q Consensus 485 ~~~~dg~v~~W~~~~~~~~~~ 505 (513)
=...-|.|.||.+..+.|...
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a 405 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAA 405 (415)
T ss_pred EeccCCeEEEEecCCCCEEEE
Confidence 558899999999988866543
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.012 Score=56.02 Aligned_cols=195 Identities=10% Similarity=0.062 Sum_probs=134.9
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeC---CCcEEEEeCCCCcee
Q 010296 222 HILALAVSSDGRYL-ASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSF---DRTVKIWNAEDRAYI 297 (513)
Q Consensus 222 ~v~~~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 297 (513)
.-..+++++.++.+ ++...++.|.+.|..+.........-. ....++++++++.++.+.. ++++.+.|..+.+.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 34567888888744 444456899999988777766655322 6678999999988886655 689999999998888
Q ss_pred EEeecccCCeEEEEeeCCCeEE-E-EeCCCcEEEEecCCCeeeE-----EecCCCCeeEEEeecCCe--EEEEeCC--CC
Q 010296 298 STLFGHQSEVLTIDCLRKERVL-T-VGRDRSMQLWKVPEESRLV-----FRAPASSLECCCFISNDE--FLSGSDD--GS 366 (513)
Q Consensus 298 ~~~~~~~~~v~~~~~~~~~~~~-~-~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~--~~~~~~d--g~ 366 (513)
........+ ..+++.|++..+ + -..++.|.+++........ ..........+.+.+++. +++...+ +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 775433334 889999988644 3 3368999999977665543 122334456678888886 3333333 68
Q ss_pred EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec-CCCc
Q 010296 367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA-GNGS 445 (513)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~ 445 (513)
+...|..++......... ... ....+.++|+|+++.+.. ..+.
T Consensus 233 v~~id~~~~~v~~~~~~~-----------------------------------~~~-~~~~v~~~p~g~~~yv~~~~~~~ 276 (381)
T COG3391 233 VLKIDTATGNVTATDLPV-----------------------------------GSG-APRGVAVDPAGKAAYVANSQGGT 276 (381)
T ss_pred EEEEeCCCceEEEecccc-----------------------------------ccC-CCCceeECCCCCEEEEEecCCCe
Confidence 888888887665542111 111 255688999999888874 4478
Q ss_pred EEEEEeCCC
Q 010296 446 VRLWAIESE 454 (513)
Q Consensus 446 v~vwd~~~~ 454 (513)
|.+-|..+.
T Consensus 277 V~vid~~~~ 285 (381)
T COG3391 277 VSVIDGATD 285 (381)
T ss_pred EEEEeCCCC
Confidence 888888775
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.98 E-value=2.6e-06 Score=80.53 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=129.7
Q ss_pred cCCCeEEEEECCCC--CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-CCCE
Q 010296 158 HRQSVTAVALSEDD--SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-DGRY 234 (513)
Q Consensus 158 h~~~V~~~~~s~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 234 (513)
-...+.|+++.-+. ..++.|..+|.|.+-.+....-. ......+|...+++++|++ |.++
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 34567777766543 46778999999998877643321 0112457788899999998 5677
Q ss_pred EEEEe----CCCcEEEEeCCCc--cee--eeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC
Q 010296 235 LASGG----LDRHIHLWDTRIQ--EHI--QAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS 305 (513)
Q Consensus 235 l~s~~----~dg~i~vwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 305 (513)
||.|- .+..+.|||+.++ .+. ..|.+ ......+++|..+.+.+++|.....+.++|++.... ....-.+.
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk 196 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTK 196 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhh
Confidence 87774 3567999999877 221 11222 334566899998889999999999999999984321 11111333
Q ss_pred CeEEEEeeC-CCeEEEEeCCCcEEEEec-CCCe-eeEE-----ecCCCCeeEEEeecCC--eEEEEe-CCCCEEEEecCC
Q 010296 306 EVLTIDCLR-KERVLTVGRDRSMQLWKV-PEES-RLVF-----RAPASSLECCCFISND--EFLSGS-DDGSIELWSLLR 374 (513)
Q Consensus 306 ~v~~~~~~~-~~~~~~~~~d~~i~iwd~-~~~~-~~~~-----~~~~~~v~~~~~~~~~--~~~~~~-~dg~i~iwd~~~ 374 (513)
.+..+...| ....++...++.|.+||. +.-. .+.. ......+..++|.|.. .+++.. ..++|++|++..
T Consensus 197 ~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 197 YVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 456666777 556666677999999993 3221 1111 1112357889998864 455444 457899998753
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.0013 Score=62.84 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred cccEEEEEEcCCCCEEEEEe---CC-CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCc--EEEEeCC
Q 010296 220 SKHILALAVSSDGRYLASGG---LD-RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRT--VKIWNAE 292 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~ 292 (513)
...+..-+|+|++..++..+ .. ..+.++++.+++....+. ..+.-..-+|+|+|+.|+ +...||. |+++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 44566778999888765442 22 469999999887554443 233345578999999877 4455664 6667887
Q ss_pred CCceeEEeecccCCeEEEEeeCCCeEE--EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCC
Q 010296 293 DRAYISTLFGHQSEVLTIDCLRKERVL--TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGS 366 (513)
Q Consensus 293 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~ 366 (513)
++. +..+....+.-..-.|+|+|+.+ +.+..|. |.++++..............-..-.++|+|. ++ .....|.
T Consensus 271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 766 33354344444466789998543 4444554 5556666555443333333333678899996 33 2323455
Q ss_pred --EEEEecCCCCe
Q 010296 367 --IELWSLLRKKP 377 (513)
Q Consensus 367 --i~iwd~~~~~~ 377 (513)
|.+.++.++..
T Consensus 350 ~~i~~~~~~~~~~ 362 (425)
T COG0823 350 WDIDKNDLASGGK 362 (425)
T ss_pred eeeEEeccCCCCc
Confidence 56666655543
No 356
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00043 Score=64.68 Aligned_cols=142 Identities=8% Similarity=0.103 Sum_probs=104.3
Q ss_pred CCCE-EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCe-------EEEEeCCCcEEEEeCCCCce--eEEe
Q 010296 231 DGRY-LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSE-------LFSGSFDRTVKIWNAEDRAY--ISTL 300 (513)
Q Consensus 231 ~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~--~~~~ 300 (513)
+.++ |.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+.+. -+.|-.+..|.-||.+-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3444 44555667789999999999999987765 777788776532 34566788999999874222 2222
Q ss_pred ecc----cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCee-eEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296 301 FGH----QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESR-LVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL 373 (513)
Q Consensus 301 ~~~----~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~ 373 (513)
.+| .....|++...+|.+++++.+|.|++||--.... ..+.+...+|..+..+.+|..+.|..+..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 222 3456778888899999999999999999733222 256677889999999999998888888888888764
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.94 E-value=0.0019 Score=60.13 Aligned_cols=174 Identities=11% Similarity=0.147 Sum_probs=109.5
Q ss_pred cEEEEeCCCCceeEEeeccc-CCeEEEEe---eCC----C-eEEEEeC---------C-CcEEEEecCCC-----eee--
Q 010296 285 TVKIWNAEDRAYISTLFGHQ-SEVLTIDC---LRK----E-RVLTVGR---------D-RSMQLWKVPEE-----SRL-- 338 (513)
Q Consensus 285 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~---~~~----~-~~~~~~~---------d-~~i~iwd~~~~-----~~~-- 338 (513)
.|++.|..+.+.+..+.-.. ..+.+++. ..+ . .+++|.. . |.|.++++... +..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888888777765553222 23444432 221 2 3444432 2 88999999884 222
Q ss_pred EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC-eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcC
Q 010296 339 VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK-PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYH 417 (513)
Q Consensus 339 ~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 417 (513)
......++|.+++.. +++++++ ..+.|.+|++...+ .........+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~------------------------------- 129 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP------------------------------- 129 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BS-------------------------------
T ss_pred EEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecce-------------------------------
Confidence 233446778888777 5554444 46889999998887 4333322111
Q ss_pred CCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCccccccc
Q 010296 418 SSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 418 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~ 497 (513)
..++++... +++|++|..-..|.++.+......+..+..-.....++++.|-+++..++++ ..+|.|.++..
T Consensus 130 -----~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~-D~~gnl~~l~~ 201 (321)
T PF03178_consen 130 -----FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG-DKDGNLFVLRY 201 (321)
T ss_dssp -----SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-ETTSEEEEEEE
T ss_pred -----EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-cCCCeEEEEEE
Confidence 126666665 4599999988889999877654445556554456779999999777766666 89999999987
Q ss_pred CC
Q 010296 498 LP 499 (513)
Q Consensus 498 ~~ 499 (513)
.+
T Consensus 202 ~~ 203 (321)
T PF03178_consen 202 NP 203 (321)
T ss_dssp -S
T ss_pred CC
Confidence 64
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.93 E-value=0.0015 Score=48.31 Aligned_cols=100 Identities=18% Similarity=0.319 Sum_probs=71.2
Q ss_pred eEEEEEec---CC-CeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE
Q 010296 265 VSCLTFRQ---GT-SELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF 340 (513)
Q Consensus 265 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 340 (513)
|++|++.. +| +.|++|+.|..|++|+- ...+..+. ....|.++.....++|+.+-.+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeee
Confidence 66777754 22 57999999999999984 35566665 56778888888889999999999999997532 2222
Q ss_pred ecCCCCeeEEEeec-C--C--eEEEEeCCCCEEE
Q 010296 341 RAPASSLECCCFIS-N--D--EFLSGSDDGSIEL 369 (513)
Q Consensus 341 ~~~~~~v~~~~~~~-~--~--~~~~~~~dg~i~i 369 (513)
......+.++.+.. + | .|++|-.+|.|-+
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22333466665544 2 3 3999999998753
No 359
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.89 E-value=0.011 Score=56.72 Aligned_cols=182 Identities=9% Similarity=0.060 Sum_probs=101.9
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEe--CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSAS--KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
.|..--.+|..++|......++|.- ..|.+++=|- ...+.-..|..+.|.|-
T Consensus 14 aL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds--------------------------~viGqFEhV~GlsW~P~ 67 (671)
T PF15390_consen 14 ALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS--------------------------KVIGQFEHVHGLSWAPP 67 (671)
T ss_pred HHHhhhccccceEecCCCEEEEEeeeeeCCccccCCc--------------------------cEeeccceeeeeeecCc
Confidence 3444456899999985444444542 2333322111 11234456999999994
Q ss_pred ----CCEEEEEeCCCcEEEEeCC-----CcceeeeccCc---CC--CeEEEEEecCCCeEEEEeCCCcEEEEeCCCC--c
Q 010296 232 ----GRYLASGGLDRHIHLWDTR-----IQEHIQAFPGH---RG--PVSCLTFRQGTSELFSGSFDRTVKIWNAEDR--A 295 (513)
Q Consensus 232 ----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~ 295 (513)
...|++......|.||.+. .++.+.....+ .- --..+.|+|....|++-.....-.+++++.. +
T Consensus 68 ~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr 147 (671)
T PF15390_consen 68 CTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR 147 (671)
T ss_pred ccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce
Confidence 3345555567899999875 22222221111 11 1235689998887776555444445665532 2
Q ss_pred eeEEeecccCCeEEEEeeCCC-eEE-EEeCCCcEEEEecCCCeee-----EEecCCCCeeEEEeecCCeEEEEe
Q 010296 296 YISTLFGHQSEVLTIDCLRKE-RVL-TVGRDRSMQLWKVPEESRL-----VFRAPASSLECCCFISNDEFLSGS 362 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~ 362 (513)
....+ ...+.|.|.+|.+|| +++ +.++.=.-++||-...... ....-.+.|.++...-+..++++.
T Consensus 148 VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAvaT 220 (671)
T PF15390_consen 148 VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVAT 220 (671)
T ss_pred EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEEe
Confidence 22333 467889999999988 444 5556666788886543221 222334455555555555555544
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.024 Score=54.01 Aligned_cols=243 Identities=7% Similarity=0.009 Sum_probs=148.7
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEE
Q 010296 222 HILALAVSSDGRYLASGG-LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYIST 299 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~ 299 (513)
....+...+++..+.... ....+.+.+................-..+++++.+..++ +...+..|.+.|..+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 355677788875444433 222455555442222222221213445778888888555 444568999999888777666
Q ss_pred eecccCCeEEEEeeCCC-eEEEEeC---CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecC
Q 010296 300 LFGHQSEVLTIDCLRKE-RVLTVGR---DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLL 373 (513)
Q Consensus 300 ~~~~~~~v~~~~~~~~~-~~~~~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~ 373 (513)
..... ....+++.+++ .+.++.. ++++.+.|..+...............+++.|+|. +++-..++.|.+.+..
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 54322 56788888877 4444443 6889999988887765433322338899999996 3355578999999966
Q ss_pred CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC---CcEEEEE
Q 010296 374 RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN---GSVRLWA 450 (513)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d---g~v~vwd 450 (513)
...... -..... .........+.++|+|.+++..... +.+...|
T Consensus 191 ~~~v~~-~~~~~~--------------------------------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 191 GNSVVR-GSVGSL--------------------------------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred Ccceec-cccccc--------------------------------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 654442 110000 0111125678899999876665433 5888888
Q ss_pred eCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 451 IESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
..++. ........... ....+.++|+|.++.+.....+.|.+-+....
T Consensus 238 ~~~~~-v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 238 TATGN-VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCce-EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 87762 11111111112 45678999999999988666677777765543
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.87 E-value=0.015 Score=50.96 Aligned_cols=201 Identities=10% Similarity=0.057 Sum_probs=113.6
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcceeeeccCc-CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 218 KQSKHILALAVSSDGR-YLASGGLDRHIHLWDTRIQEHIQAFPGH-RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
+-...+..|+|.|+.+ ++++....+.|..++. .|+.+..+.-. .+....|++..++.++++.-.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3344599999999755 5666667788888886 47877776543 3568899999888777777678999999884321
Q ss_pred ------eeEEee-----cccCCeEEEEeeCC-CeEEEEeCCCcEEEEecCC---CeeeE---------EecCCCCeeEEE
Q 010296 296 ------YISTLF-----GHQSEVLTIDCLRK-ERVLTVGRDRSMQLWKVPE---ESRLV---------FRAPASSLECCC 351 (513)
Q Consensus 296 ------~~~~~~-----~~~~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~---~~~~~---------~~~~~~~v~~~~ 351 (513)
.+..+. .+...+-.++|.+. ++|+++-...-..+|.+.. ..... .......+..++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 111221 23445889999995 5788777766666776654 11111 011234567888
Q ss_pred eecCC-e-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEE
Q 010296 352 FISND-E-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVT 429 (513)
Q Consensus 352 ~~~~~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 429 (513)
+.|.. . ++.+.....|.++| .+|+++..+........- .......-.|+
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl----------------------------~~~~~QpEGIa 228 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL----------------------------SKDIPQPEGIA 228 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-----------------------------SS---SEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc----------------------------ccccCCccEEE
Confidence 88864 4 66777888899999 778877776643321000 01112267899
Q ss_pred EecCCCEEEEecCCCcEEEE
Q 010296 430 VCGGSDLAASGAGNGSVRLW 449 (513)
Q Consensus 430 ~s~~~~~l~~g~~dg~v~vw 449 (513)
|.++|++.+++ .-+..++|
T Consensus 229 ~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp E-TT--EEEEE-TTTEEEEE
T ss_pred ECCCCCEEEEc-CCceEEEe
Confidence 99999655554 55555554
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.0073 Score=52.25 Aligned_cols=204 Identities=14% Similarity=0.084 Sum_probs=117.6
Q ss_pred eEEEEECCCCC-eEEEEeCCce-EEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe
Q 010296 162 VTAVALSEDDS-KGFSASKDGS-ILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG 239 (513)
Q Consensus 162 V~~~~~s~~~~-~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 239 (513)
-..|+|+|... -++.+-.-|+ ..++|......+.++... ....+.+|. .|||+|.+|...-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-----------~~RHfyGHG------vfs~dG~~LYATE 132 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-----------EGRHFYGHG------VFSPDGRLLYATE 132 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-----------cCceeeccc------ccCCCCcEEEeec
Confidence 34577777544 3445555555 567888877766544111 112344553 6999999988764
Q ss_pred C-----CCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeC------------------CCcEEEEeCCCCc
Q 010296 240 L-----DRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSF------------------DRTVKIWNAEDRA 295 (513)
Q Consensus 240 ~-----dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~ 295 (513)
. .|.|-|||...+ +.+..+..|.-....+.|.+||+.|+.+.. .-++.+.|..++.
T Consensus 133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence 3 378999998754 456677888888889999999999887642 0123333434444
Q ss_pred eeEEe--e--cccCCeEEEEeeCCCeEEEEeC-CC-----cEEEEecCCCeeeEEec--------CCCCeeEEEeecCC-
Q 010296 296 YISTL--F--GHQSEVLTIDCLRKERVLTVGR-DR-----SMQLWKVPEESRLVFRA--------PASSLECCCFISND- 356 (513)
Q Consensus 296 ~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~-d~-----~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~- 356 (513)
.+.+. . .+...|..++.-++++++.++. .| --.+=-...+..+.+.. ....|-+++.+...
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g 292 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG 292 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence 43321 1 2344567777777777776652 11 01111111111111111 12345566666444
Q ss_pred eEE-EEeCCCCEEEEecCCCCeeEEee
Q 010296 357 EFL-SGSDDGSIELWSLLRKKPVYIVK 382 (513)
Q Consensus 357 ~~~-~~~~dg~i~iwd~~~~~~~~~~~ 382 (513)
.++ ++-..+...+||..++..+....
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 333 44455677899999998776543
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.87 E-value=0.0015 Score=65.21 Aligned_cols=183 Identities=12% Similarity=0.079 Sum_probs=103.4
Q ss_pred CCCeEEEEECCCCCeEEEEe------CCc--eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC
Q 010296 159 RQSVTAVALSEDDSKGFSAS------KDG--SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS 230 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 230 (513)
...+...+++|+|..++... .|+ .|.+++. +.....+ .. ....+.-.|+|
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~l------------------t~--g~~~t~PsWsp 406 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQV------------------LE--GHSLTRPSWSL 406 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceee------------------ec--CCCCCCceECC
Confidence 34678999999999887554 244 4444453 2211211 01 12367788999
Q ss_pred CCCEEEEEeCC------------CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEE---EeCCCCc
Q 010296 231 DGRYLASGGLD------------RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKI---WNAEDRA 295 (513)
Q Consensus 231 ~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~ 295 (513)
+|..|++.... +.+.+..+..+.... ...+.|..+.|+|||.+|+... ++.|++ -....+.
T Consensus 407 DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 407 DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 98877776532 233333444333322 2356799999999999988665 477777 4433443
Q ss_pred e-e---EEee-cccCCeEEEEeeCCCeEEEEeCCCcEEEEec--CCCeeeEEec--CCCCeeEEEeecCCeEEEEeCCCC
Q 010296 296 Y-I---STLF-GHQSEVLTIDCLRKERVLTVGRDRSMQLWKV--PEESRLVFRA--PASSLECCCFISNDEFLSGSDDGS 366 (513)
Q Consensus 296 ~-~---~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~dg~ 366 (513)
. + ..+. .....+.++.|.+++.|+++..++...+|.+ .......... ...++..++-++ +.++....+|.
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~ 561 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAV 561 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCce
Confidence 1 1 1122 2233468899999998887666554445544 3222211111 244566666665 34555555554
Q ss_pred EE
Q 010296 367 IE 368 (513)
Q Consensus 367 i~ 368 (513)
+.
T Consensus 562 ~~ 563 (591)
T PRK13616 562 LQ 563 (591)
T ss_pred EE
Confidence 33
No 364
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.86 E-value=0.012 Score=54.94 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=43.6
Q ss_pred ceEEEEEEec-------CCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEEEEEEeecCCCEEEEEecCCCccc
Q 010296 423 SWVSSVTVCG-------GSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLG 493 (513)
Q Consensus 423 ~~i~~~~~s~-------~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~ 493 (513)
..++.+.|-. .|.+|++.-..+.|....+............+ .....+..|++.|||.++++. ..+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~-d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD-DSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE--TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE-CCCCeEe
Confidence 4477777764 34567776667788888887553322222212 234489999999999988888 6777763
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.018 Score=52.49 Aligned_cols=194 Identities=10% Similarity=0.034 Sum_probs=116.1
Q ss_pred EECCCCCeE-EEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 010296 166 ALSEDDSKG-FSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHI 244 (513)
Q Consensus 166 ~~s~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 244 (513)
.|.++...| .+--..+.|.-|+..++..... .+...+.++..-..+..|+++. .-+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------------------~~p~~~~~~~~~d~~g~Lv~~~--~g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------------------PSPGGFSSGALIDAGGRLIACE--HGV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------------------ECCCCcccceeecCCCeEEEEc--ccc
Confidence 466666644 4555678888888876643321 2233345555544555555554 236
Q ss_pred EEEeCCCcceeeeccC-----cCCCeEEEEEecCCCeEEEEeC-----------CCcEEEEeCCCCceeEEeecccCCeE
Q 010296 245 HLWDTRIQEHIQAFPG-----HRGPVSCLTFRQGTSELFSGSF-----------DRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 245 ~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
.++++.++..+..+.. .....+.+...|+|.+.++... -|.|+.++. .+..+..+..+-...+
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~N 166 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPN 166 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecC
Confidence 6777665555322211 2245667888899887664433 133444444 4555666665566678
Q ss_pred EEEeeCCCe-EEEEe-CCCcEEEEecCC------Ce--eeEEecCCCCeeEEEeecCCeEE-EEeCCC-CEEEEecCCCC
Q 010296 309 TIDCLRKER-VLTVG-RDRSMQLWKVPE------ES--RLVFRAPASSLECCCFISNDEFL-SGSDDG-SIELWSLLRKK 376 (513)
Q Consensus 309 ~~~~~~~~~-~~~~~-~d~~i~iwd~~~------~~--~~~~~~~~~~v~~~~~~~~~~~~-~~~~dg-~i~iwd~~~~~ 376 (513)
.|+|+|+++ ++.+. ..+.|..|++.. +. ...+.......-.++...+|.+. ++...| .|.+|+.. ++
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 999999994 44444 357888887752 11 11222334556677777888766 444443 89999988 88
Q ss_pred eeEEeecC
Q 010296 377 PVYIVKNA 384 (513)
Q Consensus 377 ~~~~~~~~ 384 (513)
.+..+...
T Consensus 246 l~~~i~lP 253 (307)
T COG3386 246 LLGEIKLP 253 (307)
T ss_pred EEEEEECC
Confidence 88888754
No 366
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0017 Score=62.05 Aligned_cols=202 Identities=13% Similarity=0.058 Sum_probs=117.4
Q ss_pred EEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe---CC-CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEE
Q 010296 244 IHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS---FD-RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVL 319 (513)
Q Consensus 244 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 319 (513)
+.+-|.. +.....+......+..-+|+|++..++..+ .. ..+.++++.+++....+. ..+.-....|+|+|+.+
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 4444433 444444544555677778999988765432 22 469999999887655443 44445567899998543
Q ss_pred --EEeCCCc--EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCC--EEEEecCCCCeeEEeecCCCcccCC
Q 010296 320 --TVGRDRS--MQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGS--IELWSLLRKKPVYIVKNAHPLLDGL 391 (513)
Q Consensus 320 --~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~ 391 (513)
+...++. |+++|+.+.....+......-..-.|+|+|. ++ +.+..|. |.++++...... .+......
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~---- 327 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGG---- 327 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCC----
Confidence 4555655 6666777666444333333333567899996 33 5555565 444455554442 22211100
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCC-Cc--EEEEEeCCCCcceeeeeecCccc
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGN-GS--VRLWAIESETKDIQPLYNLPLVG 468 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-g~--v~vwd~~~~~~~~~~~~~~~~~~ 468 (513)
-..-.|+|+|++|+..+.. |. |.+.++.++.. ++.+. ...
T Consensus 328 ---------------------------------~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt---~~~ 370 (425)
T COG0823 328 ---------------------------------NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT---STY 370 (425)
T ss_pred ---------------------------------CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc---ccc
Confidence 1156789999998877643 44 67777766632 33332 333
Q ss_pred EEEEEEeecCCCEEEEEecCC
Q 010296 469 FVNSLAFAKSGQFLIAGVGQE 489 (513)
Q Consensus 469 ~v~~v~~sp~~~~l~~~~~~d 489 (513)
....-.|.|+|+++....+.-
T Consensus 371 ~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 371 LNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cCCCCCcCCCCceEEEeccCC
Confidence 344567888888877664443
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.83 E-value=0.023 Score=51.63 Aligned_cols=229 Identities=13% Similarity=0.110 Sum_probs=128.5
Q ss_pred CCCEEEEEeCCCcEEEEeCC-CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE----------
Q 010296 231 DGRYLASGGLDRHIHLWDTR-IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST---------- 299 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------- 299 (513)
.++.|+.|+.+| ++++++. ........ +...|..+...+.-+.|++-+ |+.|+++++........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 577899999888 9999983 23333322 233499999999877766664 59999999876443331
Q ss_pred ----eecccCCeEEEE---eeCCCeEEEEeCCCcEEEEecCCC-----eeeEEecCCCCeeEEEeecCCeEEEEeCCCCE
Q 010296 300 ----LFGHQSEVLTID---CLRKERVLTVGRDRSMQLWKVPEE-----SRLVFRAPASSLECCCFISNDEFLSGSDDGSI 367 (513)
Q Consensus 300 ----~~~~~~~v~~~~---~~~~~~~~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i 367 (513)
.......+..++ -......+++.....|.+|..... ...........+..++|. .+.++.|.. ...
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~-~~f 159 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTS-KGF 159 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeC-Cce
Confidence 111222344444 112345666666779998887653 233334455778888888 335555554 448
Q ss_pred EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEE
Q 010296 368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVR 447 (513)
Q Consensus 368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~ 447 (513)
.+.|+.++.....+....... . .........++..+... ++.+|++- +..-.
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~---~----------------------~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSS---S----------------------FKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGV 211 (275)
T ss_pred EEEecCCCCceEEeCccCCcc---h----------------------hhhcccCCCceEEEEeC-CceEEEEe--cceEE
Confidence 888999776655443221110 0 00001111224444443 34566653 33334
Q ss_pred EEEeCCCCcce-eeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 448 LWAIESETKDI-QPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 448 vwd~~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
+.+.... ... ..+. -...+.++++ ..+||++. +.+ .|.+|++.++.
T Consensus 212 fv~~~G~-~~r~~~i~---W~~~p~~~~~--~~pyli~~-~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 212 FVNKNGE-PSRKSTIQ---WSSAPQSVAY--SSPYLIAF-SSN-SIEVRSLETGE 258 (275)
T ss_pred EEcCCCC-cCcccEEE---cCCchhEEEE--ECCEEEEE-CCC-EEEEEECcCCc
Confidence 4444332 111 1121 1334566666 44688877 554 59999988774
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00012 Score=69.66 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=79.3
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeE-EEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS-CLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
...|.-+.|+|.-.++|.+..+|.|.++.+. .+.+.+++.|...++ +++|.|+|+.|+.|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4458889999999999999999999999988 777888887777777 99999999999999999999999999988776
Q ss_pred Ee-ecccCCeEEEEeeC
Q 010296 299 TL-FGHQSEVLTIDCLR 314 (513)
Q Consensus 299 ~~-~~~~~~v~~~~~~~ 314 (513)
.. ......|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 53 22445677777753
No 369
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.79 E-value=0.0093 Score=56.38 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=48.6
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296 229 SSDGRYLASGG---------LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI 297 (513)
Q Consensus 229 s~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 297 (513)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|+++++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 57787777632 246789999998776554443 67788999999999988775 578999998777443
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.79 E-value=0.042 Score=53.41 Aligned_cols=242 Identities=14% Similarity=0.163 Sum_probs=127.5
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-----------c
Q 010296 222 HILALAVSSDGRYLASG-GLD----RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-----------T 285 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~-~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~ 285 (513)
.+..+.+||+|++||.+ +.. ..|+++|+.+++.+...-... ....+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 45578999999998865 333 359999999997765321111 223499999988877554333 3
Q ss_pred EEEEeCCCCcee--EEeecccCC--eEEEEeeCCCeEEE--EeC--C-CcEEEEecCCC-----eeeEEecCCCCeeEEE
Q 010296 286 VKIWNAEDRAYI--STLFGHQSE--VLTIDCLRKERVLT--VGR--D-RSMQLWKVPEE-----SRLVFRAPASSLECCC 351 (513)
Q Consensus 286 i~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~--~~~--d-~~i~iwd~~~~-----~~~~~~~~~~~v~~~~ 351 (513)
|+.|.+.+...- ..+...... ...+..+++++++. ... + ..+++.++... ....+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888888876432 333333333 56777888886542 332 3 45777887764 2333333333443333
Q ss_pred eecCCeEEEEe----CCCCEEEEecCCCCe---eEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296 352 FISNDEFLSGS----DDGSIELWSLLRKKP---VYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424 (513)
Q Consensus 352 ~~~~~~~~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
-..++.|..-+ ..+.|...++..... ...+... .....
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-----------------------------------~~~~~ 328 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-----------------------------------DEDVS 328 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-------------------------------------SSSEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-----------------------------------CCcee
Confidence 33355433222 234555556555442 1111110 01112
Q ss_pred EEEEEEecCCCEEEEecCCC--cEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEE---ecCCCcccccccCC
Q 010296 425 VSSVTVCGGSDLAASGAGNG--SVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAG---VGQEPRLGRWGHLP 499 (513)
Q Consensus 425 i~~~~~s~~~~~l~~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~---~~~dg~v~~W~~~~ 499 (513)
+..+....+ .+++....++ .|+++++..+ .....+ ..+..+.|..+...+++..+... .-.-++|..||+.+
T Consensus 329 l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~-~~~~~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 329 LEDVSLFKD-YLVLSYRENGSSRLRVYDLDDG-KESREI-PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEEETT-EEEEEEEETTEEEEEEEETT-T-EEEEEE-ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEEEECC-EEEEEEEECCccEEEEEECCCC-cEEeee-cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 555554432 3444444444 5888888722 222222 23346667777777776654432 22336777777776
Q ss_pred Ccc
Q 010296 500 AAR 502 (513)
Q Consensus 500 ~~~ 502 (513)
+..
T Consensus 406 ~~~ 408 (414)
T PF02897_consen 406 GEL 408 (414)
T ss_dssp TCE
T ss_pred CCE
Confidence 653
No 371
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.78 E-value=0.031 Score=55.61 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=87.5
Q ss_pred CeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------CCCcEE
Q 010296 172 SKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------LDRHIH 245 (513)
Q Consensus 172 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~ 245 (513)
..++.++.++.|.-.|..+++.+....... . .....+++--.--++ .++++. .+|.|.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-----~----------~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~ 184 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGD-----Y----------KAGYTITAAPLVVKG-KVITGISGGEFGVRGYVT 184 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccc-----c----------cccccccCCcEEECC-EEEEeecccccCCCcEEE
Confidence 457778889999999999999876431100 0 000011110000134 444443 268899
Q ss_pred EEeCCCcceeeeccCc-------------------------------CCCeE-EEEEecCCCeEEEEeCC-----C----
Q 010296 246 LWDTRIQEHIQAFPGH-------------------------------RGPVS-CLTFRQGTSELFSGSFD-----R---- 284 (513)
Q Consensus 246 vwd~~~~~~~~~~~~~-------------------------------~~~v~-~~~~~~~~~~l~~~~~d-----g---- 284 (513)
.+|..+|+.+-.+..- .+.++ .+++.+...+|+.+..+ +
T Consensus 185 AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~ 264 (527)
T TIGR03075 185 AYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRP 264 (527)
T ss_pred EEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCC
Confidence 9999999876554321 01121 34666666666655421 2
Q ss_pred -------cEEEEeCCCCceeEEeecccCCeEE---------EEeeCCCe---E-EEEeCCCcEEEEecCCCeee
Q 010296 285 -------TVKIWNAEDRAYISTLFGHQSEVLT---------IDCLRKER---V-LTVGRDRSMQLWKVPEESRL 338 (513)
Q Consensus 285 -------~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~~~~~~---~-~~~~~d~~i~iwd~~~~~~~ 338 (513)
.|.-.|++||+....++.....+.. +....+++ + +.+..+|.++++|..+++.+
T Consensus 265 gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 265 GDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6778899999988776543332222 22222443 4 47788999999999988764
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.76 E-value=0.0033 Score=46.50 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=70.2
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 223 ILALAVSS---DG-RYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 223 v~~~~~s~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
|++|++.. +| +.|++|+.|..|++|+- ...+..+. -...|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 66677665 32 58999999999999973 46666666 4567888877765 66889999999999985 33455
Q ss_pred EeecccCCeEEEEeeC-C--C--eEEEEeCCCcEE
Q 010296 299 TLFGHQSEVLTIDCLR-K--E--RVLTVGRDRSMQ 328 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~-~--~--~~~~~~~d~~i~ 328 (513)
.++ ....+.++.+.. + | .|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 554 334467776654 2 3 577888888764
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00019 Score=68.41 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=76.3
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEE-EEEEcCCCCEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHIL-ALAVSSDGRYL 235 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l 235 (513)
.-...|.-+.|+|...++|++..+|.|.+..+. ...+.++ ..|...++ +++|.|||+.|
T Consensus 18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-------------------p~p~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-------------------PIPGENVTASLCWRPDGKLL 77 (665)
T ss_pred ccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-------------------cCCCCccceeeeecCCCCEE
Confidence 345678899999999999999999999998887 5544443 22444555 99999999999
Q ss_pred EEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEEec
Q 010296 236 ASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTFRQ 272 (513)
Q Consensus 236 ~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~ 272 (513)
|+|-.||+|++.|+.++..+..+. .....|.++.|.+
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 999999999999999998776632 2456778888864
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.047 Score=52.52 Aligned_cols=157 Identities=9% Similarity=-0.016 Sum_probs=79.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcc------eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 010296 221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQE------HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDR 294 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 294 (513)
+.|.++.|+.+. .|++...+|.+++||+.... .+....-....+....+..+| ++.-..++.+.+..--..
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccc
Confidence 679999999754 56666789999999986333 111111112223333444455 333334455544432221
Q ss_pred c-eeEEeecccCC---------eEE-EEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEE
Q 010296 295 A-YISTLFGHQSE---------VLT-IDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSG 361 (513)
Q Consensus 295 ~-~~~~~~~~~~~---------v~~-~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~ 361 (513)
. ....+...... ... ..+..+. ..+....++.+.+.+-..... .....++..+++||+++ ++.-
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~ 234 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALF 234 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEE
Confidence 1 11111100000 000 1122222 233334444555333221111 12346799999999997 5566
Q ss_pred eCCCCEEEEecCCCCeeEEeec
Q 010296 362 SDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
..+|.+.|....-.+.+..+..
T Consensus 235 t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 235 TDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred ECCCCEEEEECcccceeEEeec
Confidence 6779999988766666655543
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00099 Score=67.65 Aligned_cols=102 Identities=20% Similarity=0.357 Sum_probs=76.8
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
.+.+++.|+..|.|...|+...-... . .-..-..+|++++|+.+|..++.|-.+|.|.+||+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~-~-----------------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPL-H-----------------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM 159 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchh-h-----------------cCCccCCcceeeEecCCCceeccccCCCcEEEEEc
Confidence 45678889989999988876542110 0 11234678999999999999999999999999999
Q ss_pred CCcceeeeccCcCCCeEEEEE---ecCCCeEEEEeCCCcEEEEeC
Q 010296 250 RIQEHIQAFPGHRGPVSCLTF---RQGTSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~iwd~ 291 (513)
..+++++.+..|..+.+++-+ ..++..++++...|. +|.+
T Consensus 160 ~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 160 HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 999999888877777665543 445567888877776 5554
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.71 E-value=5.7e-05 Score=44.61 Aligned_cols=36 Identities=44% Similarity=0.577 Sum_probs=32.3
Q ss_pred hhhhhccCCCeEEEEECCCCCeEEEEeCCceEEEEe
Q 010296 152 FRVLLKHRQSVTAVALSEDDSKGFSASKDGSILHWD 187 (513)
Q Consensus 152 ~~~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd 187 (513)
...+..|...|+++.|++.+.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445668999999999999999999999999999996
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0013 Score=66.77 Aligned_cols=100 Identities=22% Similarity=0.342 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCc-ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEE
Q 010296 231 DGRYLASGGLDRHIHLWDTRIQ-EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLT 309 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 309 (513)
.+..++.|+..|.+...|+... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3567889998999999887653 111111224679999999999999999999999999999999998888777766665
Q ss_pred EEee---CCC-eEEEEeCCCcEEEEec
Q 010296 310 IDCL---RKE-RVLTVGRDRSMQLWKV 332 (513)
Q Consensus 310 ~~~~---~~~-~~~~~~~d~~i~iwd~ 332 (513)
+-+. .++ .++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5443 344 4667777776 5544
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.038 Score=50.41 Aligned_cols=223 Identities=13% Similarity=0.046 Sum_probs=124.1
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec---
Q 010296 227 AVSSDGRY-LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG--- 302 (513)
Q Consensus 227 ~~s~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 302 (513)
.|.++... +.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++.. .+.+++..++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 56676664 444445788999998766432 222 2334455555445555665543 356777665555333221
Q ss_pred --ccCCeEEEEeeCCCeEEEEeCC------------CcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EE-EEeCCCC
Q 010296 303 --HQSEVLTIDCLRKERVLTVGRD------------RSMQLWKVPEESRLVFRAPASSLECCCFISNDE-FL-SGSDDGS 366 (513)
Q Consensus 303 --~~~~v~~~~~~~~~~~~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~dg~ 366 (513)
.....+.+...|+|.+..+... |.|+.++...........+-...+.++|+|+++ |. +=+..+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 1234567788889988876655 335555543233333334455667899999995 33 4455578
Q ss_pred EEEEecCC--CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCC
Q 010296 367 IELWSLLR--KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNG 444 (513)
Q Consensus 367 i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg 444 (513)
|+-|++.. +..-... . .+......+..-.++...+|.+.+++...|
T Consensus 187 i~r~~~d~~~g~~~~~~----~----------------------------~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 187 IHRYDLDPATGPIGGRR----G----------------------------FVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred EEEEecCcccCccCCcc----e----------------------------EEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 88887653 1100000 0 000011122255677778888776555554
Q ss_pred -cEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecCC
Q 010296 445 -SVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQE 489 (513)
Q Consensus 445 -~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~d 489 (513)
.|.+|+.. + +.+..+. .|. ..+++++|- |+.+.|++++...
T Consensus 235 ~~v~~~~pd-G-~l~~~i~-lP~-~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 235 GRVVRFNPD-G-KLLGEIK-LPV-KRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEEEECCC-C-cEEEEEE-CCC-CCCccceEeCCCcCEEEEEecCC
Confidence 89999987 4 3333333 222 567778885 5666666663433
No 379
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.62 E-value=0.1 Score=53.27 Aligned_cols=287 Identities=13% Similarity=0.056 Sum_probs=154.8
Q ss_pred CCCeEEEEECCCC------CeEEEEeCCceEEEEeC-CCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCC
Q 010296 159 RQSVTAVALSEDD------SKGFSASKDGSILHWDV-SSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSD 231 (513)
Q Consensus 159 ~~~V~~~~~s~~~------~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 231 (513)
...|.|+.++|-| ++++.|.++..+.+--. .+...+... ......-...|.-..|-.+
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~---------------~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE---------------QLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee---------------ccCCCccchheeeEEeecc
Confidence 5789999999842 37888887766655433 222221110 0001122344666677777
Q ss_pred CCEEEEEeCCCcEEEEeCC--Ccceeeec--cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296 232 GRYLASGGLDRHIHLWDTR--IQEHIQAF--PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 307 (513)
..+|.++..||.+..|-+. ++..-..- .-...++.--.|+..++.-+-+..|.-..+|.-+..-+...+. -..+
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls--~kev 672 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLS--LKEV 672 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccc--hHHh
Confidence 8899999999998776554 44332211 2234566666777766655555567777777654332222221 1112
Q ss_pred EEEE-eeCC--CeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCe-EEEEeC-----------C---CCE
Q 010296 308 LTID-CLRK--ERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDE-FLSGSD-----------D---GSI 367 (513)
Q Consensus 308 ~~~~-~~~~--~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~-----------d---g~i 367 (513)
..++ |+.+ ...++....+.+++..+..-+.+ ...........+++.+... +.+.+. . ..+
T Consensus 673 ~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l 752 (1096)
T KOG1897|consen 673 NHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFL 752 (1096)
T ss_pred hhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEE
Confidence 2222 2222 23444455667777766543332 1123334455666665333 222221 1 135
Q ss_pred EEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC-CCEEEEec-----
Q 010296 368 ELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG-SDLAASGA----- 441 (513)
Q Consensus 368 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~g~----- 441 (513)
+++|-++.+.+...+.... .....|.++.|..+ +.++++|.
T Consensus 753 ~vlD~nTf~vl~~hef~~~---------------------------------E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 753 RVLDQNTFEVLSSHEFERN---------------------------------ETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred EEecCCceeEEeecccccc---------------------------------ceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 5556555444433322111 01111556668777 67777775
Q ss_pred -----CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 442 -----GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 442 -----~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
..|.|.||.+... ..++.+......+.|.++.. -+|++||.- +. .|++++....
T Consensus 800 de~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~-fngkllA~I-n~--~vrLye~t~~ 858 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE-FNGKLLAGI-NQ--SVRLYEWTTE 858 (1096)
T ss_pred CCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh-hCCeEEEec-Cc--EEEEEEcccc
Confidence 3589999999884 55666665555677776654 367777655 44 6666665554
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0014 Score=61.30 Aligned_cols=142 Identities=12% Similarity=0.092 Sum_probs=100.0
Q ss_pred cCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC--------eEEEEeCCCcEEEEecCCCee--e-E
Q 010296 272 QGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE--------RVLTVGRDRSMQLWKVPEESR--L-V 339 (513)
Q Consensus 272 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~d~~i~iwd~~~~~~--~-~ 339 (513)
.+.++|+ ++..-..|+-.|+..|+.+....-+.. |.-+.+.|+. .-+.|-.+..|+-||++-... + .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444444 555667788999999999988875555 7777777753 245666789999999975433 1 1
Q ss_pred E----ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC
Q 010296 340 F----RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS 415 (513)
Q Consensus 340 ~----~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 415 (513)
. ........|.+...+|.+++|+.+|.|++||. .+....+.-
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl--------------------------------- 467 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL--------------------------------- 467 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc---------------------------------
Confidence 1 22345677888888999999999999999996 443332221
Q ss_pred cCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeC
Q 010296 416 YHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIE 452 (513)
Q Consensus 416 ~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~ 452 (513)
++-..+|..+..+.+|++|++.+ +.++.+.++.
T Consensus 468 ---PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 468 ---PGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ---cccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 33334599999999999988766 4477777764
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.014 Score=50.61 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=68.0
Q ss_pred EEEEEEcCCCC-EEEEEeCCCc-EEEEeCCCcceeeeccCcCCC--eEEEEEecCCCeEEEEeC-----CCcEEEEeCCC
Q 010296 223 ILALAVSSDGR-YLASGGLDRH-IHLWDTRIQEHIQAFPGHRGP--VSCLTFRQGTSELFSGSF-----DRTVKIWNAED 293 (513)
Q Consensus 223 v~~~~~s~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~ 293 (513)
...|+|+|... -++.+-.-|+ ..++|....+...++....+. .-.-.|+|+|.+|+..-. -|.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34577888543 3444544444 568888877766555432221 223479999999987654 37899999985
Q ss_pred C-ceeEEeecccCCeEEEEeeCCCeEEEEeC
Q 010296 294 R-AYISTLFGHQSEVLTIDCLRKERVLTVGR 323 (513)
Q Consensus 294 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 323 (513)
+ +.+..+..|.-....+.+.+||+++++..
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 4 44666777777778899999998776554
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.49 E-value=0.00027 Score=41.50 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=33.5
Q ss_pred ceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEe
Q 010296 253 EHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWN 290 (513)
Q Consensus 253 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 290 (513)
+++..+..|...|.++.|.+.+..+++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566677889999999999999999999999999996
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.45 E-value=0.037 Score=51.69 Aligned_cols=245 Identities=11% Similarity=0.058 Sum_probs=104.3
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCc----ceeeeccC---c----CCCeEEEEEecCCCeEEEEeC------CCcEEEEeCC
Q 010296 231 DGRYLASGG-LDRHIHLWDTRIQ----EHIQAFPG---H----RGPVSCLTFRQGTSELFSGSF------DRTVKIWNAE 292 (513)
Q Consensus 231 ~~~~l~s~~-~dg~i~vwd~~~~----~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~ 292 (513)
..++|+..+ ..+.|+|.|+.+. ++..++.. + -.....+...|+|..++++-. -|.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999998743 33333321 1 122234445578888886532 3568888888
Q ss_pred CCceeEEeecccC---CeEEEEeeCCC-eEEEEe--------------------CCCcEEEEecCCCeeeEEecCC---C
Q 010296 293 DRAYISTLFGHQS---EVLTIDCLRKE-RVLTVG--------------------RDRSMQLWKVPEESRLVFRAPA---S 345 (513)
Q Consensus 293 ~~~~~~~~~~~~~---~v~~~~~~~~~-~~~~~~--------------------~d~~i~iwd~~~~~~~~~~~~~---~ 345 (513)
+............ --+.+-|.|.. .+++.. ...++.+||+.+.+.+...... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7777666543222 23455566643 344432 2467999999998877443332 2
Q ss_pred CeeEEEeecC--Ce--EEEEeCCCCEEEEec-CCCC--eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCC-cC
Q 010296 346 SLECCCFISN--DE--FLSGSDDGSIELWSL-LRKK--PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGS-YH 417 (513)
Q Consensus 346 ~v~~~~~~~~--~~--~~~~~~dg~i~iwd~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 417 (513)
-+..+.|..+ .. |+.+.-.++|..|-- ..++ .-..+....... .+...+.. -.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v-------------------~~~~lp~ml~~ 306 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV-------------------EGWILPEMLKP 306 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE---------------------SS---GGGGG
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc-------------------Ccccccccccc
Confidence 2345555543 32 554444555554433 3332 111111111000 00000000 00
Q ss_pred CCCCcceEEEEEEecCCCEEEEec-CCCcEEEEEeCCCCcceeeeee----------------cCcccEEEEEEeecCCC
Q 010296 418 SSSAYSWVSSVTVCGGSDLAASGA-GNGSVRLWAIESETKDIQPLYN----------------LPLVGFVNSLAFAKSGQ 480 (513)
Q Consensus 418 ~~~~~~~i~~~~~s~~~~~l~~g~-~dg~v~vwd~~~~~~~~~~~~~----------------~~~~~~v~~v~~sp~~~ 480 (513)
......-|+.|.+|.|.++|+..+ ..|.|+.||+.....+...-.. ....+...-|..|.||+
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk 386 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK 386 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe
Confidence 011123389999999999998776 5799999999886433222110 01234457899999999
Q ss_pred EEEEEecCCCccccccc
Q 010296 481 FLIAGVGQEPRLGRWGH 497 (513)
Q Consensus 481 ~l~~~~~~dg~v~~W~~ 497 (513)
.|.++.| ...-||.
T Consensus 387 RlYvTnS---Lys~WD~ 400 (461)
T PF05694_consen 387 RLYVTNS---LYSAWDK 400 (461)
T ss_dssp EEEEE-------HHHHH
T ss_pred EEEEEee---ccccccc
Confidence 9998843 4555653
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.37 E-value=0.023 Score=57.04 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=85.3
Q ss_pred ccEEEEEEcCCCCEEEEEe------CCC--cEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---------
Q 010296 221 KHILALAVSSDGRYLASGG------LDR--HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD--------- 283 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 283 (513)
..+.+.+++|+|+.++... .++ .|.+++. .+.......+ ...+.-.|+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999887665 243 4555554 2222222232 237888999998877766432
Q ss_pred ---CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEE---EecCCCeeeE-----Eec-CCCCeeEEE
Q 010296 284 ---RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQL---WKVPEESRLV-----FRA-PASSLECCC 351 (513)
Q Consensus 284 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i---wd~~~~~~~~-----~~~-~~~~v~~~~ 351 (513)
+.+.+..+..+.... ...+.|..+.|+|+|.-++.-.++.|++ -....+.... ... ....+..+.
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 233333443333222 2356799999999996443333577777 3323332111 111 223357789
Q ss_pred eecCCeEEEEeCCCCEEEEec
Q 010296 352 FISNDEFLSGSDDGSIELWSL 372 (513)
Q Consensus 352 ~~~~~~~~~~~~dg~i~iwd~ 372 (513)
|.+++.|+++..++...+|.+
T Consensus 504 W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 504 WRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred EecCCEEEEEecCCCCceEEE
Confidence 999998777666554445543
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.00037 Score=58.05 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=79.5
Q ss_pred EEEEeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEee
Q 010296 277 LFSGSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFI 353 (513)
Q Consensus 277 l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~ 353 (513)
|...+.+|.|.-++++..+.... -.-+... ..+ +--+..+++++.+|.|++|+....... .+......+.++...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v-~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV-VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eee-cccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 45666788888888765432111 1111111 111 112457889999999999988732222 122222333333222
Q ss_pred cCC--eEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296 354 SND--EFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC 431 (513)
Q Consensus 354 ~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 431 (513)
-+. ...+++.+|.|+.|++.-.+.+.....+.. ..+..+..+
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~------------------------------------~~~e~~ivv 154 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF------------------------------------ESGEELIVV 154 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC------------------------------------CCcceeEEe
Confidence 222 355899999999999888776655432211 114445555
Q ss_pred cCCCEEEEe--cCCCcEEEEEeCCC
Q 010296 432 GGSDLAASG--AGNGSVRLWAIESE 454 (513)
Q Consensus 432 ~~~~~l~~g--~~dg~v~vwd~~~~ 454 (513)
..+.+|+.+ |.|..++.|++...
T Consensus 155 ~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 155 GSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cCCceEEeeccccchhhhhcchhhh
Confidence 556677766 77777888877543
No 386
>PRK10115 protease 2; Provisional
Probab=97.23 E-value=0.34 Score=50.15 Aligned_cols=192 Identities=11% Similarity=0.056 Sum_probs=102.7
Q ss_pred CCeEEEEECCCCCeEEEEe-----CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296 160 QSVTAVALSEDDSKGFSAS-----KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234 (513)
Q Consensus 160 ~~V~~~~~s~~~~~l~t~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 234 (513)
-.+..+.++|++++|+.+. ....|++-|+.++..+... .... -..++|+++++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------------------i~~~--~~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------------------LDNV--EPSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------------------ccCc--ceEEEEeeCCCE
Confidence 4477789999999988543 2346888999877533211 0111 145999999887
Q ss_pred EEEEeCC------CcEEEEeCCCc--ceeeeccCcCCCeE-EEEEecCCCeEEEEeC---CCcEEEEeCC--CCceeEEe
Q 010296 235 LASGGLD------RHIHLWDTRIQ--EHIQAFPGHRGPVS-CLTFRQGTSELFSGSF---DRTVKIWNAE--DRAYISTL 300 (513)
Q Consensus 235 l~s~~~d------g~i~vwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~ 300 (513)
|+....+ ..|+.+++.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 7665432 36788888877 33334443333333 2333447777664333 4578888853 33322222
Q ss_pred ecccCCeEEEEeeCCCeEEEEeC----CCcEEEEecCC-CeeeEEecC--CCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296 301 FGHQSEVLTIDCLRKERVLTVGR----DRSMQLWKVPE-ESRLVFRAP--ASSLECCCFISNDEFLSGSDDGSIELWSLL 373 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~-~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~ 373 (513)
.........+. +..+.++..+. ...|...++.. .....+..+ ...+..+.+..+..+++...+|.-+++-+.
T Consensus 266 ~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 266 PRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred ECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEc
Confidence 22222223222 33344443332 22344444442 222233333 235777777744345566777766665443
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.13 Score=45.25 Aligned_cols=199 Identities=16% Similarity=0.201 Sum_probs=118.3
Q ss_pred ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc-cCCeEEEEeeCCCeEEEEe-CCCcEEEEecCCC
Q 010296 258 FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH-QSEVLTIDCLRKERVLTVG-RDRSMQLWKVPEE 335 (513)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~ 335 (513)
+.+-...+.++.|+|+.+.|++......-.|+=...|..+.++.-. -...-.|.+..+++++.+. .++.++++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455556999999999999999888888888877788888876421 2234567788888888666 5788888877654
Q ss_pred eeeE-----------EecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccc
Q 010296 336 SRLV-----------FRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISN 403 (513)
Q Consensus 336 ~~~~-----------~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 403 (513)
.... ....+.....++|.|.+. |+.+-.-.-+.||.+.............. ......+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~--------~~~~~~~-- 230 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLD--------PTADRDL-- 230 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccC--------cccccce--
Confidence 3221 112255677899998775 77777777777777653321111110000 0000000
Q ss_pred ccCCCCCCCCCCcCCCCCcceEEEEEEec-CCCEEEEecCCCcEEEEEeCCCCcceeeeeecC--c-----ccEEEEEEe
Q 010296 404 GHSENGNLNPGSYHSSSAYSWVSSVTVCG-GSDLAASGAGNGSVRLWAIESETKDIQPLYNLP--L-----VGFVNSLAF 475 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~--~-----~~~v~~v~~ 475 (513)
.-.-|.++.|.+ .+.+|+-+.+++.|.-.+.... .+..+.-.. | .-.--.|+.
T Consensus 231 -----------------f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~--~~~~lsL~~g~~gL~~dipqaEGiam 291 (316)
T COG3204 231 -----------------FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE--VIELLSLTKGNHGLSSDIPQAEGIAM 291 (316)
T ss_pred -----------------EeeccccceecCCCCcEEEEecCCceEEEEecCCC--eeeeEEeccCCCCCcccCCCcceeEE
Confidence 011277778876 4456666667776666666543 122221111 1 112345788
Q ss_pred ecCCCEEEEE
Q 010296 476 AKSGQFLIAG 485 (513)
Q Consensus 476 sp~~~~l~~~ 485 (513)
.++|...+++
T Consensus 292 Dd~g~lYIvS 301 (316)
T COG3204 292 DDDGNLYIVS 301 (316)
T ss_pred CCCCCEEEEe
Confidence 8888766665
No 388
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.0095 Score=61.24 Aligned_cols=109 Identities=12% Similarity=0.044 Sum_probs=71.5
Q ss_pred CeEEEEEecCCCeEEEE--eCCCcEEEEeCCCCceeE-----------EeecccCCeEEEEeeCC--CeEEEEeCCCcEE
Q 010296 264 PVSCLTFRQGTSELFSG--SFDRTVKIWNAEDRAYIS-----------TLFGHQSEVLTIDCLRK--ERVLTVGRDRSMQ 328 (513)
Q Consensus 264 ~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~-----------~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~ 328 (513)
+|..+...+|+...++. +.+-.|..||+++...-. +.........++.|+|. ...+++..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566666776664433 334478999987532211 11112334567788874 3566778899999
Q ss_pred EEecCCCeeeEE-ecCCCCeeEEEeecCCe-EEEEeCCCCEEEEec
Q 010296 329 LWKVPEESRLVF-RAPASSLECCCFISNDE-FLSGSDDGSIELWSL 372 (513)
Q Consensus 329 iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~ 372 (513)
+..+........ .......++++|+|.|+ +++|-..|++.-|-.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 887765443322 24456788999999996 889999999988864
No 389
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.12 E-value=0.42 Score=49.17 Aligned_cols=197 Identities=13% Similarity=0.061 Sum_probs=102.4
Q ss_pred CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCC------C
Q 010296 160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDG------R 233 (513)
Q Consensus 160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~ 233 (513)
+.+++...+.+...++.++.++.+....+..+..... ........|.|+.++|-| +
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~------------------~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV------------------SHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeee------------------eeheecceeEEEecccCCCCCCcce
Confidence 4455555555666677777667666666665542111 112345679999999832 3
Q ss_pred EEEEEeCCCcEEEEeC-CCcceeeec--cC--cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCC--CCceeEEe--eccc
Q 010296 234 YLASGGLDRHIHLWDT-RIQEHIQAF--PG--HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAE--DRAYISTL--FGHQ 304 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~-~~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~ 304 (513)
+++.|.++..+.+.-. .....+... .+ -...|.-.+|-.+..+|+++..||.+.-|-+. ++..-..- .-..
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt 629 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT 629 (1096)
T ss_pred EEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCC
Confidence 7888988777665543 233222211 11 22345555666678899999999998766554 44322111 1122
Q ss_pred CCeEEEEeeCC-CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEEEEecCC
Q 010296 305 SEVLTIDCLRK-ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 305 ~~v~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~iwd~~~ 374 (513)
.++.--.|... ...+.+..|+-..+|.-+..-...-..-..--..+.|+.+.. .++....+.+++.-+..
T Consensus 630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~ 702 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDE 702 (1096)
T ss_pred CCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecc
Confidence 34443445443 344555666666666544332221111111111223333332 34444556677765544
No 390
>PHA02713 hypothetical protein; Provisional
Probab=97.12 E-value=0.074 Score=53.51 Aligned_cols=64 Identities=3% Similarity=-0.081 Sum_probs=35.3
Q ss_pred CCCEEEEecCC------CcEEEEEeCC-CCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCC--cccccccCCC
Q 010296 433 GSDLAASGAGN------GSVRLWAIES-ETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEP--RLGRWGHLPA 500 (513)
Q Consensus 433 ~~~~l~~g~~d------g~v~vwd~~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg--~v~~W~~~~~ 500 (513)
++++.+.|+.+ ..|..||..+ . .+..+...+......+++.. +|+..++| |.+| .+..||..+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~-~~~iyv~G-g~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILH-DNTIMMLH-CYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEE-CCEEEEEe-eecceeehhhcCcccc
Confidence 56677777654 2467788876 3 33434433322222222222 66666666 7777 6777766543
No 391
>PHA02713 hypothetical protein; Provisional
Probab=97.10 E-value=0.17 Score=51.05 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=36.1
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCccee--eeccCcCCCeEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCce
Q 010296 231 DGRYLASGGLD------RHIHLWDTRIQEHI--QAFPGHRGPVSCLTFRQGTSELFSGSFDR-----TVKIWNAEDRAY 296 (513)
Q Consensus 231 ~~~~l~s~~~d------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 296 (513)
++..++.|+.+ ..+..||+.+.... ..+....... +++ .-+++..+.|+.++ .+.+||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56777777753 34778888776532 2222111111 222 23566667777654 488899887654
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.09 E-value=0.013 Score=56.08 Aligned_cols=156 Identities=10% Similarity=0.109 Sum_probs=98.9
Q ss_pred CCeEEEEeeCCCeEE-EEe--CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-----eEEEEeCCCCEEEEecCC--
Q 010296 305 SEVLTIDCLRKERVL-TVG--RDRSMQLWKVPEESRLVFRAPASSLECCCFISND-----EFLSGSDDGSIELWSLLR-- 374 (513)
Q Consensus 305 ~~v~~~~~~~~~~~~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~dg~i~iwd~~~-- 374 (513)
.++..++|....+++ +.- ..|.+++=|- ...+....|..++|.|-+ .+++.-....|.||.+..
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 467888887655544 321 2343333221 223344568889998864 277888899999998752
Q ss_pred ---CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 375 ---KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 375 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
.+.+..-..... ....---..+.|+|....|++-.....-.++++
T Consensus 94 ~e~~K~l~sQtcEi~--------------------------------e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 94 TERNKLLMSQTCEIR--------------------------------EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred cccccceeeeeeecc--------------------------------CCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence 122211110000 000000456789999988887776655567777
Q ss_pred CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCC
Q 010296 452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~ 500 (513)
......++ ..+...+.|.|.+|.+||+.|+++.|..-.-++||-...
T Consensus 142 ~~d~srVk--aDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 142 HCDSSRVK--ADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eeCCceEE--EeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 76644333 233478999999999999999999888888899986554
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.0034 Score=52.54 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=69.0
Q ss_pred CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILA-LAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
+..|++|+.+|.|.+|........... ...-...|.+ |.--.++.+..+++.+|.|+.|++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR------------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh------------------hhcccccceeccccccccceeEEeccCCceeeecc
Confidence 456889999999999998732221111 0111122222 222335567888999999999999
Q ss_pred CCcceeeeccCcC-CCeEEEEEecCCCeEEEE--eCCCcEEEEeCCC
Q 010296 250 RIQEHIQAFPGHR-GPVSCLTFRQGTSELFSG--SFDRTVKIWNAED 293 (513)
Q Consensus 250 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~ 293 (513)
.-.+.+.....|. .++..+..+..+..|..+ |.|..++.|++..
T Consensus 132 ~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 132 KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9888887777777 556666666666666666 6677777777654
No 394
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.96 E-value=0.37 Score=45.81 Aligned_cols=139 Identities=11% Similarity=0.075 Sum_probs=77.0
Q ss_pred cEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--cce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCc
Q 010296 222 HILALAVSSDGRYLASGG-----------LDR-HIHLWDTRI--QEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRT 285 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~-----------~dg-~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 285 (513)
....|+|.++|+++++-. ..+ .|.+++-.. ++. ...+.........|++.+++ |++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 367899999999877753 223 677776432 221 23333334456889999988 554544443
Q ss_pred EEEEeCCCC-----c--ee-EEeec----ccCCeEEEEeeCCCeEEE-EeCC-------------------CcEEEEecC
Q 010296 286 VKIWNAEDR-----A--YI-STLFG----HQSEVLTIDCLRKERVLT-VGRD-------------------RSMQLWKVP 333 (513)
Q Consensus 286 i~iwd~~~~-----~--~~-~~~~~----~~~~v~~~~~~~~~~~~~-~~~d-------------------~~i~iwd~~ 333 (513)
+++.+.... + .+ ..+.. +......+.|.|+|.|+. .+.. +.|..++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334454321 1 11 12222 123467899999987663 3311 345555555
Q ss_pred CCeeeEEecCCCCeeEEEeecCCeEEEEe
Q 010296 334 EESRLVFRAPASSLECCCFISNDEFLSGS 362 (513)
Q Consensus 334 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 362 (513)
+.....+.........++|++.|.+++..
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 44443333334445678888888765443
No 395
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.95 E-value=0.33 Score=45.13 Aligned_cols=221 Identities=12% Similarity=0.064 Sum_probs=110.1
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecc
Q 010296 227 AVSSDGRYLASGGL---DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGH 303 (513)
Q Consensus 227 ~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 303 (513)
+|.++|+.|+.++. ...+++.|+.+++..+.-.+.........++|+.+.++-......|...|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 57788977766654 356778899988876654433233335677788888876666678999999998765444444
Q ss_pred cCCeEEEEee--CCCeEEEEeC-----------------------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-e
Q 010296 304 QSEVLTIDCL--RKERVLTVGR-----------------------DRSMQLWKVPEESRLVFRAPASSLECCCFISND-E 357 (513)
Q Consensus 304 ~~~v~~~~~~--~~~~~~~~~~-----------------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~ 357 (513)
...+-...|. .++..+++.. ...|...|+.+++..........+..+.|+|.. .
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 4444445553 3455544331 123455566777666666666677788888876 3
Q ss_pred EEEEeCCC----C-EEEEecCCC-CeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEe
Q 010296 358 FLSGSDDG----S-IELWSLLRK-KPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVC 431 (513)
Q Consensus 358 ~~~~~~dg----~-i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 431 (513)
+++-|..| . -|||-+++. .....+.. ......+.-=-|.
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-----------------------------------~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-----------------------------------RMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS--------------------------------------TTEEEEEEEE-
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeec-----------------------------------CCCCccccccccc
Confidence 55444332 1 366655432 22222211 1112236666788
Q ss_pred cCCCEEEEe-----cCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEec
Q 010296 432 GGSDLAASG-----AGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVG 487 (513)
Q Consensus 432 ~~~~~l~~g-----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 487 (513)
|+|..|.-- +.+..|.-+++.++.. ..+...+ ....+.-++||++++-=++
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~--~~~~~~p---~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGER--RRLMEMP---WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--E--EEEEEE----SEEEEEE-TTSSEEEEEE-
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCc--eEEEeCC---ceeeeEEcCCCCEEEecCC
Confidence 998765532 2344677777777632 2222221 2445667789988765533
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.94 E-value=0.21 Score=50.31 Aligned_cols=190 Identities=12% Similarity=0.134 Sum_probs=97.7
Q ss_pred CCCCeEEEEeCCc------eEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCC-
Q 010296 169 EDDSKGFSASKDG------SILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLD- 241 (513)
Q Consensus 169 ~~~~~l~t~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d- 241 (513)
..+..++.||..+ .+..||..++.-.... .. .+...-.++++. ++...++|+.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-----------------~m-~~~r~~~~~~~~-~~~lYv~GG~~~ 343 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-----------------PM-PSPRCRVGVAVL-NGKLYVVGGYDS 343 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-----------------CC-CcccccccEEEE-CCEEEEEccccC
Confidence 3455667777763 5777887766432211 00 112223344444 45778888888
Q ss_pred -----CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCceeEEeecccCCeEEEE
Q 010296 242 -----RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDR-----TVKIWNAEDRAYISTLFGHQSEVLTID 311 (513)
Q Consensus 242 -----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~ 311 (513)
.++..||..+.+....-.-.......-.-.-+|...++|+.|| +|-.||..+.+.-..-. .........
T Consensus 344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~g 422 (571)
T KOG4441|consen 344 GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHG 422 (571)
T ss_pred CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeE
Confidence 3577888877764432111111111111122567777888886 47788887765432221 111222222
Q ss_pred e-eCCCeEE-EEeCC------CcEEEEecCCCeeeEEecCC--CCeeEEEeecCCeEEEEeCCCC-----EEEEecCCCC
Q 010296 312 C-LRKERVL-TVGRD------RSMQLWKVPEESRLVFRAPA--SSLECCCFISNDEFLSGSDDGS-----IELWSLLRKK 376 (513)
Q Consensus 312 ~-~~~~~~~-~~~~d------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~dg~-----i~iwd~~~~~ 376 (513)
. .-++++. +||.+ .++..||..++.-.....-. ..-..++...+..++.|+.++. |..||..+.+
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 2 2256554 66643 45677888776544222111 1122244444445778887763 5667766654
Q ss_pred ee
Q 010296 377 PV 378 (513)
Q Consensus 377 ~~ 378 (513)
-.
T Consensus 503 W~ 504 (571)
T KOG4441|consen 503 WT 504 (571)
T ss_pred ee
Confidence 33
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.25 Score=43.55 Aligned_cols=164 Identities=10% Similarity=0.134 Sum_probs=108.6
Q ss_pred hhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCE
Q 010296 155 LLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRY 234 (513)
Q Consensus 155 ~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 234 (513)
+.+-...|.++.|+|+.+.|++......-.||=...|..+.++. +.+ -...-.|.+..+|.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-----------------L~g-~~DpE~Ieyig~n~f 142 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-----------------LTG-FSDPETIEYIGGNQF 142 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-----------------ccc-cCChhHeEEecCCEE
Confidence 34555669999999999999998888888888778888887661 111 222445778777877
Q ss_pred EEEEeCCCcEEEEeCCCcceeee----------ccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---eEEee
Q 010296 235 LASGGLDRHIHLWDTRIQEHIQA----------FPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---ISTLF 301 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~ 301 (513)
.++--.++.+.++.+.....+.. ..........++|.|....|+.+-.-.-+.||.+..... +....
T Consensus 143 vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~ 222 (316)
T COG3204 143 VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL 222 (316)
T ss_pred EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc
Confidence 77777788888887765532211 111255788999999999999998888888887764331 11111
Q ss_pred cc-------cCCeEEEEeeC-CCeEE-EEeCCCcEEEEecCCCe
Q 010296 302 GH-------QSEVLTIDCLR-KERVL-TVGRDRSMQLWKVPEES 336 (513)
Q Consensus 302 ~~-------~~~v~~~~~~~-~~~~~-~~~~d~~i~iwd~~~~~ 336 (513)
.+ -..|.++.|.+ .+.++ -+..++.+...+.....
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 11 12355666765 34444 44456777777766553
No 398
>PRK10115 protease 2; Provisional
Probab=96.94 E-value=0.63 Score=48.20 Aligned_cols=110 Identities=6% Similarity=0.000 Sum_probs=65.9
Q ss_pred ccEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCC------CcEEEE
Q 010296 221 KHILALAVSSDGRYLASGGL-----DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD------RTVKIW 289 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw 289 (513)
-.+..+.|+|++++|+.+.. ...|++.|+.++..+...-.... ..++|.++++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 44778899999998887543 24688999988864322211211 569999999877655432 368888
Q ss_pred eCCCC--ceeEEeecccCCeE-EEEeeCCCe-EEEEe---CCCcEEEEec
Q 010296 290 NAEDR--AYISTLFGHQSEVL-TIDCLRKER-VLTVG---RDRSMQLWKV 332 (513)
Q Consensus 290 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~-~~~~~---~d~~i~iwd~ 332 (513)
++.++ +-...+........ .+..+.++. ++..+ .++.+.+|+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 98887 33333333233333 222333543 33222 3467888884
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.87 E-value=0.3 Score=43.51 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=86.1
Q ss_pred CeEEEEECCCCCeEEEEe---CCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 161 SVTAVALSEDDSKGFSAS---KDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 161 ~V~~~~~s~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
.+.+.++++++..+|... ....+.++... .....+ . ....++.-.|++++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~------------------~--~g~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPV------------------L--TGGSLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceee------------------c--cCCccccccccCCCCEEEE
Confidence 688999999999887655 33445555433 322211 0 1235777889999877766
Q ss_pred EeCCCcEEEEe-CCCccee-eec--cCcCCCeEEEEEecCCCeEEEEe---CCCcEEEEeCC---CC------ceeEEee
Q 010296 238 GGLDRHIHLWD-TRIQEHI-QAF--PGHRGPVSCLTFRQGTSELFSGS---FDRTVKIWNAE---DR------AYISTLF 301 (513)
Q Consensus 238 ~~~dg~i~vwd-~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~ 301 (513)
...+...+++. ..++... ..+ ..-...|..+.++|+|..++... .++.|.+--+. .+ ..+....
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~ 162 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP 162 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc
Confidence 66666666663 3333221 111 11122899999999999987555 35677776543 22 1112222
Q ss_pred cccCCeEEEEeeCCCeEEEEeC
Q 010296 302 GHQSEVLTIDCLRKERVLTVGR 323 (513)
Q Consensus 302 ~~~~~v~~~~~~~~~~~~~~~~ 323 (513)
.....+..+.|.+++.|++...
T Consensus 163 ~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred cccCcceeeeecCCCEEEEEeC
Confidence 3356789999999998875553
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.86 E-value=0.0048 Score=37.97 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCc
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGK 192 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~ 192 (513)
...|.+++|+|...+||.+..+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 443
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.85 E-value=0.29 Score=42.98 Aligned_cols=196 Identities=9% Similarity=0.019 Sum_probs=111.3
Q ss_pred ceeeeccCcCC--CeEEEEEecCCCeEEEEeCCC--cEEEEeCCCCceeEEeeccc-CCeEEEEeeCCCeEE-EEeCCCc
Q 010296 253 EHIQAFPGHRG--PVSCLTFRQGTSELFSGSFDR--TVKIWNAEDRAYISTLFGHQ-SEVLTIDCLRKERVL-TVGRDRS 326 (513)
Q Consensus 253 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~ 326 (513)
+.+..++ |.. -...+.|..++.++-+.+.-| .|+.+|+.+++......-.. ----.++... ++++ ..=.++.
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSE
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCe
Confidence 3455555 333 345678877777777777766 79999999998766543221 1223344443 3444 5556889
Q ss_pred EEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccC
Q 010296 327 MQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHS 406 (513)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 406 (513)
..+||..+-+.+........-..++. .+..|+.+.....|+++|..+.+....+.....
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-------------------- 170 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-------------------- 170 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET--------------------
T ss_pred EEEEccccceEEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEEC--------------------
Confidence 99999998877754444456666763 334577777788899999998888777754221
Q ss_pred CCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee-------------ecCcccEEEEE
Q 010296 407 ENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY-------------NLPLVGFVNSL 473 (513)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~-------------~~~~~~~v~~v 473 (513)
...-..++-+.+- +|.+.|-.=....|...|..++. ....+. ..+.....+.+
T Consensus 171 ------------g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGI 236 (264)
T PF05096_consen 171 ------------GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGI 236 (264)
T ss_dssp ------------TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred ------------CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeE
Confidence 1111125556664 45444444444556666666651 111110 01124678999
Q ss_pred EeecCCCEEEEE
Q 010296 474 AFAKSGQFLIAG 485 (513)
Q Consensus 474 ~~sp~~~~l~~~ 485 (513)
|+.|....|.++
T Consensus 237 Ayd~~~~~l~vT 248 (264)
T PF05096_consen 237 AYDPETDRLFVT 248 (264)
T ss_dssp EEETTTTEEEEE
T ss_pred eEeCCCCEEEEE
Confidence 999988777666
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.77 E-value=0.61 Score=48.06 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=53.1
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------cce---eeec--------cCcCCCeEEEEEecC---CC
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRI----------QEH---IQAF--------PGHRGPVSCLTFRQG---TS 275 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~---~~ 275 (513)
...|..|.++|+|.+|+..|..|. .|-.+.. ++. .+++ ..+...|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 456999999999999999887664 4443321 111 1111 124457889999996 47
Q ss_pred eEEEEeCCCcEEEEeCCCCc
Q 010296 276 ELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 276 ~l~~~~~dg~i~iwd~~~~~ 295 (513)
+|++-..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997543
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.77 E-value=0.19 Score=50.52 Aligned_cols=144 Identities=13% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCCCEEEEEeCC------CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC------CcEEEEeCCCCc
Q 010296 230 SDGRYLASGGLD------RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD------RTVKIWNAEDRA 295 (513)
Q Consensus 230 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~ 295 (513)
..+.+++.|+.. ..+..||..++.... .+. ....-.++++. ++...++|+.+ .++..||..+.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 345566777766 367788888775432 222 22223444444 34667788888 357888888876
Q ss_pred eeEEeecccCC-eEEEEeeCCC-eEEEEeCCCc-----EEEEecCCCeeeEEecCCCCeeEE-EeecCCe-EEEEeCCC-
Q 010296 296 YISTLFGHQSE-VLTIDCLRKE-RVLTVGRDRS-----MQLWKVPEESRLVFRAPASSLECC-CFISNDE-FLSGSDDG- 365 (513)
Q Consensus 296 ~~~~~~~~~~~-v~~~~~~~~~-~~~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~-~~~~~~dg- 365 (513)
....-.-.... -.+++.. +| .+++||.+|. +-.||..+.+-............. ...-+|+ +++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 44321111111 1122222 44 4457777753 666777665543322222222222 2223444 66777554
Q ss_pred -----CEEEEecCCCC
Q 010296 366 -----SIELWSLLRKK 376 (513)
Q Consensus 366 -----~i~iwd~~~~~ 376 (513)
++..||..+.+
T Consensus 440 ~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNT 455 (571)
T ss_pred ccccceEEEEcCCCCc
Confidence 35666666554
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.72 E-value=0.0068 Score=37.32 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=29.8
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH 254 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 254 (513)
...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.67 E-value=0.4 Score=42.11 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=97.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCcceeeeccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010296 222 HILALAVSSDGRYLASGGLDR--HIHLWDTRIQEHIQAFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIS 298 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 298 (513)
-...+.|..++.++-+.+.-| .|+.+|+.+++......-.. ---..++...+ +.....-..+...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 356788877888888877665 79999999998765544222 22234455433 333345568899999999998888
Q ss_pred EeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee---EEecC---CCCeeEEEeecCCeE-EEEeCCCCEEEEe
Q 010296 299 TLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL---VFRAP---ASSLECCCFISNDEF-LSGSDDGSIELWS 371 (513)
Q Consensus 299 ~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~---~~~v~~~~~~~~~~~-~~~~~dg~i~iwd 371 (513)
++. ..+.-+.++. .+..++.......|+++|..+-... ..... -..+.-+.+. +|.+ +=.-....|...|
T Consensus 125 ~~~-y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 125 TFP-YPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEe-cCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 875 4456677773 3456777767789999998765443 12222 2234456665 4554 4444566788889
Q ss_pred cCCCCeeEEee
Q 010296 372 LLRKKPVYIVK 382 (513)
Q Consensus 372 ~~~~~~~~~~~ 382 (513)
..+|+....+.
T Consensus 202 p~tG~V~~~iD 212 (264)
T PF05096_consen 202 PETGKVVGWID 212 (264)
T ss_dssp TTT-BEEEEEE
T ss_pred CCCCeEEEEEE
Confidence 99999888775
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.61 E-value=1.1 Score=46.57 Aligned_cols=240 Identities=9% Similarity=0.045 Sum_probs=123.7
Q ss_pred CCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc----------------CCCCE
Q 010296 171 DSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS----------------SDGRY 234 (513)
Q Consensus 171 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------~~~~~ 234 (513)
+..|+.++.++.|.-.|..+++.+..+.+....... ..| .....+++. ..+..
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~----------~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~r 262 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG----------RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARR 262 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc----------ccc-ccccceEEecCCcccccccccccccccCCE
Confidence 567788888899999999999987765332111000 000 001112221 13457
Q ss_pred EEEEeCCCcEEEEeCCCcceeeeccCcCCCeE-------------EEEEec--CCCeEEEEeC----------CCcEEEE
Q 010296 235 LASGGLDRHIHLWDTRIQEHIQAFPGHRGPVS-------------CLTFRQ--GTSELFSGSF----------DRTVKIW 289 (513)
Q Consensus 235 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iw 289 (513)
++.++.|+.|.-.|..+|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 88888999999999999998876542 11110 011111 1334555543 6889999
Q ss_pred eCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCC--cEEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCC
Q 010296 290 NAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDR--SMQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGS 366 (513)
Q Consensus 290 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~ 366 (513)
|+.+|+.+..+..-....... .+.+.....+..+ ...-+|...+....-.+...+ .+....+ .......+.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS 415 (764)
T ss_pred ECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce
Confidence 999999988775321111111 1123222211111 233344433333221111110 0000001 111223566
Q ss_pred EEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCC---CEEEEecCC
Q 010296 367 IELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGS---DLAASGAGN 443 (513)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~g~~d 443 (513)
|.-.|..+++..-.++..+...-. +. ......+..+.. .+| ..++.++.+
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD-------------------------~D-~~~~p~L~d~~~-~~G~~~~~v~~~~K~ 468 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWD-------------------------MD-VPAQPSLVDLPD-ADGTTVPALVAPTKQ 468 (764)
T ss_pred EEEEeCCCCceEEEecccCCcccc-------------------------cc-ccCCceEEeeec-CCCcEeeEEEEECCC
Confidence 778899999888877653321100 00 000000222221 245 378999999
Q ss_pred CcEEEEEeCCCC
Q 010296 444 GSVRLWAIESET 455 (513)
Q Consensus 444 g~v~vwd~~~~~ 455 (513)
|.++++|-.+++
T Consensus 469 G~~~vlDr~tG~ 480 (764)
T TIGR03074 469 GQIYVLDRRTGE 480 (764)
T ss_pred CEEEEEECCCCC
Confidence 999999999883
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.61 E-value=0.68 Score=48.14 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=48.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC--------eEEEEEec----------------CCCeEEEEeCCCcEE
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP--------VSCLTFRQ----------------GTSELFSGSFDRTVK 287 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~ 287 (513)
+..|+.++.++.|.-.|..+|+.+-.+...... ...+.+.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888899999999999887766532210 12233321 234788888899999
Q ss_pred EEeCCCCceeEEee
Q 010296 288 IWNAEDRAYISTLF 301 (513)
Q Consensus 288 iwd~~~~~~~~~~~ 301 (513)
-.|..+|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999998887653
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.50 E-value=0.32 Score=43.39 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=86.6
Q ss_pred CeEEEEeeCCCeEE-EEe---CCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEE-eCCCCEEEEe-cCCCCeeE
Q 010296 306 EVLTIDCLRKERVL-TVG---RDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSG-SDDGSIELWS-LLRKKPVY 379 (513)
Q Consensus 306 ~v~~~~~~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~dg~i~iwd-~~~~~~~~ 379 (513)
.+.+.++++++..+ +.. ....++++.......... ....+..-.|.+++.+.+. ..+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 67888999988544 333 234455554433222222 3346777788888875543 4455555553 22332211
Q ss_pred -EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec---CCCcEEEEEeCCCC
Q 010296 380 -IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA---GNGSVRLWAIESET 455 (513)
Q Consensus 380 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~v~vwd~~~~~ 455 (513)
.+.. ......|+.+.+||||..+|.-. .++.|.|--+....
T Consensus 103 ~~v~~-----------------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 103 VEVDW-----------------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred EEecc-----------------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 1110 00001499999999998877655 45788888765332
Q ss_pred cc-ee----eeeec-CcccEEEEEEeecCCCEEEEEecCCCcccc
Q 010296 456 KD-IQ----PLYNL-PLVGFVNSLAFAKSGQFLIAGVGQEPRLGR 494 (513)
Q Consensus 456 ~~-~~----~~~~~-~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~ 494 (513)
.- .. .+... .....+++++|.+++.+++.+...++.+..
T Consensus 148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 11 11 11111 124679999999999988888666664444
No 409
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.49 E-value=0.26 Score=48.91 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=47.1
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
....++++.-+|.+..++.+..||.|++|++......... ....+-..+.|...| |++
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--------------------~~~~p~~nlv~tnhg--l~~ 70 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--------------------EEAKPKENLVFTNHG--LVT 70 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--------------------hhcCCccceeeeccc--eEE
Confidence 3456889999999999999999999999998765442211 112233445565444 556
Q ss_pred EeCCCcEEEEe
Q 010296 238 GGLDRHIHLWD 248 (513)
Q Consensus 238 ~~~dg~i~vwd 248 (513)
...|..+.-|.
T Consensus 71 ~tsdrr~la~~ 81 (1636)
T KOG3616|consen 71 ATSDRRALAWK 81 (1636)
T ss_pred Eeccchhheee
Confidence 66677777775
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=96.47 E-value=0.77 Score=42.95 Aligned_cols=113 Identities=10% Similarity=0.081 Sum_probs=66.2
Q ss_pred CCCeEEEEEecCCCeEEEEeCCCcEEE-EeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE
Q 010296 262 RGPVSCLTFRQGTSELFSGSFDRTVKI-WNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF 340 (513)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 340 (513)
...+.++.+.|++.+++++ ..|.+.. ++-...............++++.+.+++.++.++..|.+++=....+.....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcccc
Confidence 4568899999987666555 4555443 2221111222223345678899999999888778888775432333322211
Q ss_pred -ec----CCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296 341 -RA----PASSLECCCFISNDEFLSGSDDGSIELWSLLRKK 376 (513)
Q Consensus 341 -~~----~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 376 (513)
.. ....+..+.+.+++.+++++.+|.|.. ....++
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGK 290 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCC
Confidence 11 123467788888888777777886653 334343
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.39 E-value=0.2 Score=47.43 Aligned_cols=141 Identities=9% Similarity=0.088 Sum_probs=93.0
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCC-------eEEEEeCCCcEEEEeCCCCc-eeEEee
Q 010296 231 DGRYLA-SGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTS-------ELFSGSFDRTVKIWNAEDRA-YISTLF 301 (513)
Q Consensus 231 ~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~-~~~~~~ 301 (513)
+..+|+ .|+....++-.|++.|+.+..+..|... -+.|.|..+ .-+.|-++..|.-.|.+-.. .+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 4556677888899999999988877654 567777432 23455566777777766432 222111
Q ss_pred ----cccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296 302 ----GHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLL 373 (513)
Q Consensus 302 ----~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~ 373 (513)
.......+......|++++++..|-|++||--..... .+.+....|..+..+.+|.++.+.-...+.+-|+.
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1223344555556789999999999999996543332 34555667888888999986666667778888765
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.34 E-value=0.78 Score=43.25 Aligned_cols=195 Identities=9% Similarity=0.071 Sum_probs=85.2
Q ss_pred CCCeEEEEe-CCCcEEEEeCCC----CceeEEeec---cc----CCeEEEEeeCCCeE-EEE--eC----CCcEEEEecC
Q 010296 273 GTSELFSGS-FDRTVKIWNAED----RAYISTLFG---HQ----SEVLTIDCLRKERV-LTV--GR----DRSMQLWKVP 333 (513)
Q Consensus 273 ~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~-~~~--~~----d~~i~iwd~~ 333 (513)
..++|+..+ ..+.|+|.|+.+ .+..+++.. +. .....+.+.|+|.+ +++ .. -|.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666655 678999999874 233444432 11 22344555677744 433 22 2456777766
Q ss_pred CCeeeEEecC----CCCeeEEEeecCCe-EEEE--------------------eCCCCEEEEecCCCCeeEEeecCCCcc
Q 010296 334 EESRLVFRAP----ASSLECCCFISNDE-FLSG--------------------SDDGSIELWSLLRKKPVYIVKNAHPLL 388 (513)
Q Consensus 334 ~~~~~~~~~~----~~~v~~~~~~~~~~-~~~~--------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~ 388 (513)
+......... ...-..+-+.|... +++. ....++++||+.+.+.++++......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g- 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG- 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-
Confidence 5444321111 11122333444332 2322 24578999999999999998754321
Q ss_pred cCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec--CCCEEEEec-CCCcEEEEEe-CCCCcceeeeeec
Q 010296 389 DGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG--GSDLAASGA-GNGSVRLWAI-ESETKDIQPLYNL 464 (513)
Q Consensus 389 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~g~-~dg~v~vwd~-~~~~~~~~~~~~~ 464 (513)
.....|.|.. +..+-++|+ -.++|..|-- ..+.-....+..+
T Consensus 245 ----------------------------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~i 290 (461)
T PF05694_consen 245 ----------------------------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDI 290 (461)
T ss_dssp ----------------------------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE
T ss_pred ----------------------------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEEC
Confidence 1144555543 333333332 3334444443 3331111111111
Q ss_pred C----------c--------ccEEEEEEeecCCCEEEEEecCCCcccccccCCCcc
Q 010296 465 P----------L--------VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAAR 502 (513)
Q Consensus 465 ~----------~--------~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~ 502 (513)
+ . ..-|+.+.+|.|.++|.+++--.|.|+.||+.....
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 1 1 356899999999999999989999999999876543
No 413
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.32 Score=48.46 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=89.5
Q ss_pred CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeE----EecCCCCeeEEEeecCCeEE
Q 010296 284 RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLV----FRAPASSLECCCFISNDEFL 359 (513)
Q Consensus 284 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~ 359 (513)
-.|+|+++ +|+.+..+.-..+.+..+.|+.+..+++...+|++++|++-...... +......|..+.+..+|.++
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence 45888887 45666555445558899999999999999999999999986544332 22333446666666666433
Q ss_pred EEeCCCCEEEE-ecCCCCeeEEeec-CCCcc--cCCCCcccCcCc-cc--cc--------cCCCCCCCCCCcCCCCCcce
Q 010296 360 SGSDDGSIELW-SLLRKKPVYIVKN-AHPLL--DGLKNFEQDEGK-IS--NG--------HSENGNLNPGSYHSSSAYSW 424 (513)
Q Consensus 360 ~~~~dg~i~iw-d~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-i~--~~--------~~~~~~~~~~~~~~~~~~~~ 424 (513)
. ..+|.+.+- +..... +...+. ..... .....+.+.... +. +. ....+......+ ....+.
T Consensus 143 l-t~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~--~~~~~~ 218 (829)
T KOG2280|consen 143 L-TVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL--SWPNSS 218 (829)
T ss_pred E-ecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc--CCCCce
Confidence 3 334444433 222211 111111 00000 000011111000 00 00 000000000001 112355
Q ss_pred EEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 425 VSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 425 i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
+..+.+||+.++|+-=...|.|.+-.....
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 888999999999999999999999887654
No 414
>PHA03098 kelch-like protein; Provisional
Probab=96.30 E-value=0.69 Score=46.70 Aligned_cols=104 Identities=11% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCcceeee--ccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCcee
Q 010296 231 DGRYLASGGLDR------HIHLWDTRIQEHIQA--FPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDRAYI 297 (513)
Q Consensus 231 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 297 (513)
++..++.|+.++ .+..||..+.+.... +........ ++ .-++..++.|+.+ ..+..||..+.+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776542 577888877654321 111111112 22 2256666677764 35778888776543
Q ss_pred EEeec-ccCCeEEEEeeCCCeEE-EEeCC------CcEEEEecCCCee
Q 010296 298 STLFG-HQSEVLTIDCLRKERVL-TVGRD------RSMQLWKVPEESR 337 (513)
Q Consensus 298 ~~~~~-~~~~v~~~~~~~~~~~~-~~~~d------~~i~iwd~~~~~~ 337 (513)
..-.. +...-.+++.. ++.++ .||.. ..+..||+.+..-
T Consensus 372 ~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 21110 11111122222 45444 55532 4578888876543
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.30 E-value=0.84 Score=41.56 Aligned_cols=278 Identities=12% Similarity=0.059 Sum_probs=128.9
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC-ccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSG-KGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLAS 237 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 237 (513)
...+..|.|.....-+++|. .++| +....+ +.-..... . .........++|.|..+ ..+++
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~-----~---------~~~~~~~~l~~I~f~~~-~g~iv 77 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSL-----D---------LDNPFDYHLNSISFDGN-EGWIV 77 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-------------------S-----EEEEEEEETT-EEEEE
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCcccccccc-----C---------CCccceeeEEEEEecCC-ceEEE
Confidence 45899999995555555554 4543 333333 22111100 0 00001224677888643 44455
Q ss_pred EeCCCcEEEEeCCCcceeeecc---CcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc-eeEEeecccCCeEEEEee
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFP---GHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA-YISTLFGHQSEVLTIDCL 313 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~ 313 (513)
|. .+ +.+.....|+.-..+. .-.+....+....++. +..++..|.|+.=. ..++ -........+.+..+..+
T Consensus 78 G~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 78 GE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp EE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred cC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence 43 44 4444445454333321 1123334444444443 33344455543322 2232 233334456778888888
Q ss_pred CCCeEEEEeCCCcEE-EEecCCC-eeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCC
Q 010296 314 RKERVLTVGRDRSMQ-LWKVPEE-SRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGL 391 (513)
Q Consensus 314 ~~~~~~~~~~d~~i~-iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 391 (513)
+++++++++..|.++ -|+.-.. -....+.....+..+.|.|++.+......|.|++=+... ....+......
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~--~~~~w~~~~~~---- 227 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD--DGETWSEPIIP---- 227 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT--EEEEE---B-T----
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC--CccccccccCC----
Confidence 999999888877765 5664432 223444456789999999999887777888888766211 11222110000
Q ss_pred CCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeec-CcccEE
Q 010296 392 KNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNL-PLVGFV 470 (513)
Q Consensus 392 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~v 470 (513)
.......+..++|.+++...++|+.. . .+.....+ +..+..... ...+.+
T Consensus 228 --------------------------~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgG-ktW~~~~~~~~~~~n~ 278 (302)
T PF14870_consen 228 --------------------------IKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGG-KTWQKDRVGENVPSNL 278 (302)
T ss_dssp --------------------------TSS--S-EEEEEESSSS-EEEEESTT---EEEESSTT-SS-EE-GGGTTSSS--
T ss_pred --------------------------cccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCC-ccceECccccCCCCce
Confidence 01111228999999998877776644 2 23333333 555444322 235678
Q ss_pred EEEEeecCCCEEEEEecCCCccccc
Q 010296 471 NSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 471 ~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
..|.|.+..+-++. |.+|.|.-|
T Consensus 279 ~~i~f~~~~~gf~l--G~~G~ll~~ 301 (302)
T PF14870_consen 279 YRIVFVNPDKGFVL--GQDGVLLRY 301 (302)
T ss_dssp -EEEEEETTEEEEE---STTEEEEE
T ss_pred EEEEEcCCCceEEE--CCCcEEEEe
Confidence 88999877555555 478877655
No 416
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.19 E-value=0.32 Score=37.48 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=78.9
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCCCc--------eeEEeecccCCeEEEEeeC-----CCeEEEEeCCCcEEEEecC
Q 010296 267 CLTFRQGTSELFSGSFDRTVKIWNAEDRA--------YISTLFGHQSEVLTIDCLR-----KERVLTVGRDRSMQLWKVP 333 (513)
Q Consensus 267 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~d~~i~iwd~~ 333 (513)
.-.|......|++++.-|.|.|++..... .+..+. ....|++++.-+ ...++..+...+|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 34566666678888999999999876432 333343 566777876544 2356677777899999999
Q ss_pred CCeeeEEecCCCCeeEEEeecC----CeEEEEeCCCCEEEEecCCCCeeEE
Q 010296 334 EESRLVFRAPASSLECCCFISN----DEFLSGSDDGSIELWSLLRKKPVYI 380 (513)
Q Consensus 334 ~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~dg~i~iwd~~~~~~~~~ 380 (513)
.+..+.++.-...+.++.+-.- ..++..+.+..|.-||....+...+
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 9888877777788888877432 2367666777888888665554443
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.11 Score=53.81 Aligned_cols=197 Identities=11% Similarity=-0.004 Sum_probs=108.5
Q ss_pred EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCC-CCCCCCCcccEEEEEEcCCCCEEEEEe--
Q 010296 163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDP-QGRATKQSKHILALAVSSDGRYLASGG-- 239 (513)
Q Consensus 163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~-- 239 (513)
+.++.++....++.++..+.+.|+-..+.-....-......+.. ..+ ........-+|..+...+|+...++..
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd---~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~ts 121 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVD---ADENLTFKVEKEIPIVIFVCFHDATDSVVVSTS 121 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccc---cccccceeeeccccceEEEeccCCceEEEEEec
Confidence 44566666666666666676666654432211110000000000 000 001112234566667777877655443
Q ss_pred CCCcEEEEeCCCccee-----eeccC------cCCCeEEEEEecCCC-eEEEEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296 240 LDRHIHLWDTRIQEHI-----QAFPG------HRGPVSCLTFRQGTS-ELFSGSFDRTVKIWNAEDRAYISTLFGHQSEV 307 (513)
Q Consensus 240 ~dg~i~vwd~~~~~~~-----~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 307 (513)
.+-.|..||+.+-..- ..|.. ......++.|+|.-. ..+.+..|+.|++..+........-......+
T Consensus 122 ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~ 201 (1405)
T KOG3630|consen 122 NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQ 201 (1405)
T ss_pred CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccce
Confidence 3347889998643211 11111 223456788888543 25677789999888775433222222356678
Q ss_pred EEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEec----CCCCeeEEEeecCCeEEEEe
Q 010296 308 LTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRA----PASSLECCCFISNDEFLSGS 362 (513)
Q Consensus 308 ~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 362 (513)
++++|+|.| +++++-..|++.-|...-.....+.. ....|.+++|.....|++..
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 999999988 55677788999988765443222211 24678999998877655433
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.12 E-value=0.0058 Score=61.11 Aligned_cols=203 Identities=15% Similarity=0.182 Sum_probs=113.8
Q ss_pred hhhhccCCCeEEEEECC-CCCeEEEEeCCceEEEEeCCC--CccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEc
Q 010296 153 RVLLKHRQSVTAVALSE-DDSKGFSASKDGSILHWDVSS--GKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVS 229 (513)
Q Consensus 153 ~~~~~h~~~V~~~~~s~-~~~~l~t~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 229 (513)
..+++..+.|-.++|-. +...++ -.-|.+.||++.- |+....+. +. ....-...+.-+.|.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~-----v~---------~~~p~gs~~~~V~wc 189 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLE-----VT---------PITPYGSDPQLVSWC 189 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceE-----Ee---------ecCcCCCCcceeeec
Confidence 45678889999998843 222222 2236788898753 33222110 00 011112223444444
Q ss_pred ---CCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEE-----------EecCCCeEEEEeCCCcEEEEeCC---
Q 010296 230 ---SDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLT-----------FRQGTSELFSGSFDRTVKIWNAE--- 292 (513)
Q Consensus 230 ---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~iwd~~--- 292 (513)
++.-++..+-.++.|++.++.+... ..+.+|...+..++ ++|||+.|++++.||.+++|.+.
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 4666777777889999887765433 44555776665543 58999999999999999888763
Q ss_pred --CCceeEEeeccc-CCeEEEEeeCC-------C--eEE-EE-eCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe-
Q 010296 293 --DRAYISTLFGHQ-SEVLTIDCLRK-------E--RVL-TV-GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDE- 357 (513)
Q Consensus 293 --~~~~~~~~~~~~-~~v~~~~~~~~-------~--~~~-~~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~- 357 (513)
..+|+...+.|. .+-.|..|+.+ + .++ ++ ..+..+++|.....++. +......+..+. -+++.
T Consensus 269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl-l~~~~d~v~iV~-p~~~~v 346 (1283)
T KOG1916|consen 269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL-LDKLIDGVQIVG-PHDGEV 346 (1283)
T ss_pred cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh-hhhcccceEeec-CCCccc
Confidence 234555556666 34344445432 1 222 33 34667889987665554 111222233333 22221
Q ss_pred ------------EEEEeCCCCEEEEecCC
Q 010296 358 ------------FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 358 ------------~~~~~~dg~i~iwd~~~ 374 (513)
++..+-++.|.+|.-+.
T Consensus 347 ~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 347 TDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 33455678888886544
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.12 E-value=0.74 Score=39.17 Aligned_cols=124 Identities=7% Similarity=0.067 Sum_probs=70.1
Q ss_pred CCCeEEEEEecCCCeEEEEeC---------CCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCe-EE-EEeCCCcEEEE
Q 010296 262 RGPVSCLTFRQGTSELFSGSF---------DRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKER-VL-TVGRDRSMQLW 330 (513)
Q Consensus 262 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~iw 330 (513)
....+.-..+|+|++++-.-. .|.++.|-+. ..+..+...-.--+.++|..+.+ +. +-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345666778899998442211 2344555432 22223333334446778877653 33 44556777667
Q ss_pred e--cCCCeee----EE--ec----CCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCc
Q 010296 331 K--VPEESRL----VF--RA----PASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPL 387 (513)
Q Consensus 331 d--~~~~~~~----~~--~~----~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (513)
| ..++... .+ .. .......+++...|. +++.-..++|..+|..+|+.+..++...+.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 7 4444322 11 11 111122344455665 556677789999999999999999866443
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.002 Score=59.92 Aligned_cols=145 Identities=20% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE-EE
Q 010296 160 QSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA-SG 238 (513)
Q Consensus 160 ~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~ 238 (513)
..-....|-|.+.-++.++.+..|..||-....... . ..+.....++|..++..++ .+
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~--------------------n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-L--------------------NPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcceecc-c--------------------CCchhHhhhhhccccchhhhhh
Confidence 334455677877778988889999999865433222 1 2234456778888777554 45
Q ss_pred eCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeE
Q 010296 239 GLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERV 318 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 318 (513)
-..+.+.+|++.+....+.-.+....-.-+.|++....++.+...|.+.|++..+.+.+...-.|...+.++++.+.++.
T Consensus 94 ek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred hcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee
Confidence 56789999998754322111111112222788999999999999999999999887776666558889999999988877
Q ss_pred EEEeCCC
Q 010296 319 LTVGRDR 325 (513)
Q Consensus 319 ~~~~~d~ 325 (513)
+.++.+.
T Consensus 174 il~dcd~ 180 (615)
T KOG2247|consen 174 ILCDCDN 180 (615)
T ss_pred eecCcHH
Confidence 7665543
No 421
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.95 E-value=0.9 Score=43.31 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=87.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce--eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc----
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEH--IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA---- 295 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---- 295 (513)
....+..++++.+++.+..-..++-|+- +.. ...-......+.++.|.+++..++++ ..|.+. |....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence 3555677888888777764333333442 221 11122234568899999988877665 456543 3333443
Q ss_pred -eeEEeec--ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEE----ecCCCCeeEEEeecCCeEEEEeCCCCEE
Q 010296 296 -YISTLFG--HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVF----RAPASSLECCCFISNDEFLSGSDDGSIE 368 (513)
Q Consensus 296 -~~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~dg~i~ 368 (513)
....+.. ....+..+.+.+++.+++++..|.+....- .++.... ......+..+.|.+++..++.+.+|.|.
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC-CCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence 1222221 223588899999999999999998777643 3333222 1223567788988888877777888876
Q ss_pred EE
Q 010296 369 LW 370 (513)
Q Consensus 369 iw 370 (513)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.95 E-value=0.89 Score=38.69 Aligned_cols=219 Identities=11% Similarity=0.090 Sum_probs=113.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCcceeee-ccCcCCCeEEEEEecCC---CeEEEEeCCCcEEEEeCCC--CceeEEeec---
Q 010296 232 GRYLASGGLDRHIHLWDTRIQEHIQA-FPGHRGPVSCLTFRQGT---SELFSGSFDRTVKIWNAED--RAYISTLFG--- 302 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~~~--- 302 (513)
+.++.+--..|.|.-||+.+.+..+. +.+ .++.++.+--.+ .+.+.++..-.|.-||... .....++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34455544567788899877654332 221 123333332222 2333444444455566322 222222211
Q ss_pred --ccCCeEEEEeeCCCeEEEEeC----------CCcEEEEecCCCeeeEEecCCCCeeEEEeecCCe--EEEEeCCCCEE
Q 010296 303 --HQSEVLTIDCLRKERVLTVGR----------DRSMQLWKVPEESRLVFRAPASSLECCCFISNDE--FLSGSDDGSIE 368 (513)
Q Consensus 303 --~~~~v~~~~~~~~~~~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~dg~i~ 368 (513)
.....+.-...|+|+++.+.. .|.++.|-....- ......-.--..++|+.+.+ +++-+.+-.|.
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc-eeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 133455556778898876653 2444555433221 12222222334567776654 44666777787
Q ss_pred EEe--cCCCC-----eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec
Q 010296 369 LWS--LLRKK-----PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA 441 (513)
Q Consensus 369 iwd--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~ 441 (513)
-|| ..+|. .+..++...+.. ....-.+++...|++.++.-
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e---------------------------------~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFE---------------------------------SLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcC---------------------------------CCCCCcceEccCCcEEEEEe
Confidence 777 55543 233332211100 00022344566888888888
Q ss_pred CCCcEEEEEeCCCCcceeeeeecCcccEEEEEEee-cCCCEEEEEecCC
Q 010296 442 GNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFA-KSGQFLIAGVGQE 489 (513)
Q Consensus 442 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~~d 489 (513)
..|+|...|..++ +.+..+.- ....|+|++|- |+-..|++++..+
T Consensus 231 ng~~V~~~dp~tG-K~L~eikl--Pt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 231 NGGTVQKVDPTTG-KILLEIKL--PTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred cCcEEEEECCCCC-cEEEEEEc--CCCceEEEEecCCCccEEEEEehhc
Confidence 8899999999998 44444433 36679999996 3334555543443
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.052 Score=51.12 Aligned_cols=142 Identities=14% Similarity=0.162 Sum_probs=87.1
Q ss_pred CCCeEE-EEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCC-------EEEEEeCC
Q 010296 170 DDSKGF-SASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGR-------YLASGGLD 241 (513)
Q Consensus 170 ~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~s~~~d 241 (513)
+..+|+ .|+.-..++--|+.-|+.+..+ ..|.. | -+.|.|..+ .-++|-.+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW-------------------~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~ 536 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEW-------------------DLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSD 536 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEe-------------------ecCCc-c-eeecCCchhHHhcCccceEEeecc
Confidence 445555 4566667777788888776654 11222 2 456666322 22344445
Q ss_pred CcEEEEeCCC-cceeeec--cC--cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCC
Q 010296 242 RHIHLWDTRI-QEHIQAF--PG--HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKE 316 (513)
Q Consensus 242 g~i~vwd~~~-~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 316 (513)
..|.-.|.+- |..+... +. ......+..-. ...++++++..|-|++||--..+....+.+....|..+....+|
T Consensus 537 ~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~G 615 (776)
T COG5167 537 YSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANG 615 (776)
T ss_pred cceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCC
Confidence 5666666542 2212111 11 11122222222 34689999999999999976555556677778889999999999
Q ss_pred eEEEEeCCCcEEEEecC
Q 010296 317 RVLTVGRDRSMQLWKVP 333 (513)
Q Consensus 317 ~~~~~~~d~~i~iwd~~ 333 (513)
.++.+.....+.+.|++
T Consensus 616 k~ilaTCk~yllL~d~~ 632 (776)
T COG5167 616 KHILATCKNYLLLTDVP 632 (776)
T ss_pred cEEEEeecceEEEEecc
Confidence 88877777888888875
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=95.70 E-value=1.1 Score=44.27 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCCEEEEEeCC--CcEEEEeCCCccee--eeccCcCCCeEEEEEecCCCeEEEEeCCC---cEEEEeCCCCceeEEeecc
Q 010296 231 DGRYLASGGLD--RHIHLWDTRIQEHI--QAFPGHRGPVSCLTFRQGTSELFSGSFDR---TVKIWNAEDRAYISTLFGH 303 (513)
Q Consensus 231 ~~~~l~s~~~d--g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~ 303 (513)
++...+.|+.+ ..+..|+..+++.. ..+....... +++ .-+++..+.|+.++ .+..||..+.+....-...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 57777777753 45788887655432 2222111111 222 23566666776543 4778888776543321111
Q ss_pred cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCC--CCeeEEEeecCCeEEEEeCC-----CCEEEEecCCC
Q 010296 304 QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA--SSLECCCFISNDEFLSGSDD-----GSIELWSLLRK 375 (513)
Q Consensus 304 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~d-----g~i~iwd~~~~ 375 (513)
..........-++.+++.| |.+.+||..+.+-....... ..-.+++...+..+++|+.+ ..+.+||..+.
T Consensus 396 ~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CccccceEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 1111111122356666544 45778888766543222111 11223333333346677654 34667776654
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=95.67 E-value=1.9 Score=42.80 Aligned_cols=139 Identities=11% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC--CcEEEEeCCCCceeEEee
Q 010296 231 DGRYLASGGLDR-----HIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD--RTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 231 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 301 (513)
++.++++|+.++ .+..||..++.... .+....... +++ .-++...+.|+.+ ..+..||..+++....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777542 46778877765332 222111111 222 2356666677653 457888877654332211
Q ss_pred cccCC-eEEEEeeCCCeEE-EEeCC---CcEEEEecCCCeeeEEecCCCCe-eEEEeecCCe-EEEEeCCCCEEEEecCC
Q 010296 302 GHQSE-VLTIDCLRKERVL-TVGRD---RSMQLWKVPEESRLVFRAPASSL-ECCCFISNDE-FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 302 ~~~~~-v~~~~~~~~~~~~-~~~~d---~~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~-~~~~~~dg~i~iwd~~~ 374 (513)
-.... -.+++. -++++. .||.+ ..+..||..+..-........+. ...+..-++. ++.| |.+.+||..+
T Consensus 349 l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 11111 112222 255554 55644 34677887765433221111111 1122234555 4455 3567777765
Q ss_pred C
Q 010296 375 K 375 (513)
Q Consensus 375 ~ 375 (513)
.
T Consensus 425 ~ 425 (480)
T PHA02790 425 N 425 (480)
T ss_pred C
Confidence 4
No 426
>PHA03098 kelch-like protein; Provisional
Probab=95.62 E-value=0.76 Score=46.41 Aligned_cols=142 Identities=12% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCcceee--eccCcCCCeEEEEEecCCCeEEEEeCC------CcEEEEeCCCCcee
Q 010296 231 DGRYLASGGLD-----RHIHLWDTRIQEHIQ--AFPGHRGPVSCLTFRQGTSELFSGSFD------RTVKIWNAEDRAYI 297 (513)
Q Consensus 231 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~ 297 (513)
++..++.|+.+ ..+..||..+.+... .+.... .-.+++ .-+++..+.|+.. ..+..||+.+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-YNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-ccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 57777778765 347788877665332 121111 111222 2345666666632 45888998876543
Q ss_pred EEeecccC-CeEEEEeeCCCeEE-EEeCC--------CcEEEEecCCCeeeEEecCC--CCeeEEEeecCCe-EEEEeCC
Q 010296 298 STLFGHQS-EVLTIDCLRKERVL-TVGRD--------RSMQLWKVPEESRLVFRAPA--SSLECCCFISNDE-FLSGSDD 364 (513)
Q Consensus 298 ~~~~~~~~-~v~~~~~~~~~~~~-~~~~d--------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~d 364 (513)
..-..... .-.++... ++.++ .||.. ..+.+||..+.+-....... ....+++.. ++. ++.|+.+
T Consensus 420 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~ 497 (534)
T PHA03098 420 KGSPLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDK 497 (534)
T ss_pred ecCCCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCc
Confidence 22110111 11122222 45444 55532 23788888776543222111 111122222 454 5566543
Q ss_pred -----CCEEEEecCCCC
Q 010296 365 -----GSIELWSLLRKK 376 (513)
Q Consensus 365 -----g~i~iwd~~~~~ 376 (513)
..|.+||..+.+
T Consensus 498 ~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 498 YEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceeEEEeCCCCE
Confidence 467778776653
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.50 E-value=1.3 Score=44.86 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=95.3
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhh-ccCCC--CCCCCCCCCCcccEEEEEEcC--CCC
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVL-KSHGA--KDPQGRATKQSKHILALAVSS--DGR 233 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~v~~~~~s~--~~~ 233 (513)
+...+++.= ..+|+++. .+.|.||++..........+..... ..... .............|+.|.... ...
T Consensus 40 KNNLtalsq---~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~E 115 (717)
T PF08728_consen 40 KNNLTALSQ---RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEE 115 (717)
T ss_pred ccceeEEec---CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCee
Confidence 344444432 66777766 6899999987654422100000000 00000 000000011223355555443 456
Q ss_pred EEEEEeCCCcEEEEeCCC-------c----c---------eeeeccCcCCCeEEEEEe--cCCCeEEEEeCCCcEEEEeC
Q 010296 234 YLASGGLDRHIHLWDTRI-------Q----E---------HIQAFPGHRGPVSCLTFR--QGTSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~ 291 (513)
.|+.|..||.|.+|.+++ . . +-..+. -...+++++++ ...++||+++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 888999999999997521 0 0 111122 34578999998 77788888888888888865
Q ss_pred CCC--ce-eEEeecccCCeEEEEeeCCC-------eEEEEeCCCcEEEEec
Q 010296 292 EDR--AY-ISTLFGHQSEVLTIDCLRKE-------RVLTVGRDRSMQLWKV 332 (513)
Q Consensus 292 ~~~--~~-~~~~~~~~~~v~~~~~~~~~-------~~~~~~~d~~i~iwd~ 332 (513)
... +. ...-..+...|-+|+|.++. .+++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 442 11 11111256678899987632 3557778999998887
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.42 E-value=0.69 Score=44.00 Aligned_cols=143 Identities=16% Similarity=0.140 Sum_probs=75.3
Q ss_pred CCeEEEEECCCCCeEEEEe-----------CCc-eEEEEeCCCCccc--cccCCChhhhccCCCCCCCCCCCCCcccEEE
Q 010296 160 QSVTAVALSEDDSKGFSAS-----------KDG-SILHWDVSSGKGV--KYLWPSEEVLKSHGAKDPQGRATKQSKHILA 225 (513)
Q Consensus 160 ~~V~~~~~s~~~~~l~t~~-----------~dg-~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (513)
.....|+|.++|+++++-. ..+ .|.+++-.++.-. ... .+.........
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~-----------------vfa~~l~~p~G 76 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN-----------------VFAEELSMVTG 76 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE-----------------EeecCCCCccc
Confidence 4567899999999777653 223 6777765433211 100 01112234578
Q ss_pred EEEcCCCCEEEEEeCCCcEEEE-eCCCc-----c---eeeeccC----cCCCeEEEEEecCCCeEEEEeCC---------
Q 010296 226 LAVSSDGRYLASGGLDRHIHLW-DTRIQ-----E---HIQAFPG----HRGPVSCLTFRQGTSELFSGSFD--------- 283 (513)
Q Consensus 226 ~~~s~~~~~l~s~~~dg~i~vw-d~~~~-----~---~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d--------- 283 (513)
|++.+++ +++ ++.. .|..| +.... + .+..+.. +......++|.|+|.+.++.+..
T Consensus 77 i~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~ 153 (367)
T TIGR02604 77 LAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPG 153 (367)
T ss_pred eeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCC
Confidence 9999888 444 4434 34434 44211 1 1222322 23457789999999876654421
Q ss_pred ----------CcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeC
Q 010296 284 ----------RTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGR 323 (513)
Q Consensus 284 ----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 323 (513)
|.|..++..++.. ..+.........++|++++.++++..
T Consensus 154 ~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 154 TSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 3455555544432 22222223346777777776665443
No 429
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.34 E-value=3 Score=40.59 Aligned_cols=309 Identities=15% Similarity=0.072 Sum_probs=146.5
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
..+|.++.+...|. +..|+.||. ..||..+++.++... .....+|..+..+-.| .|.+|
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dGL-~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVG 222 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDGL-SYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVG 222 (671)
T ss_pred CccceeeeeeccCc-EEEecCCcc-eEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEE
Confidence 45788888887774 677787774 556777766554321 1112456666655555 46778
Q ss_pred eCCCcEEEEeCCCcceeeeccC-cCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee-EEeecc--cCCeEEEEeeC
Q 010296 239 GLDRHIHLWDTRIQEHIQAFPG-HRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI-STLFGH--QSEVLTIDCLR 314 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~--~~~v~~~~~~~ 314 (513)
+.+| |++.+....+...-... ....|..+.-..+| .+-.|+..|..+. .+...... ...+.| -..|.++....
T Consensus 223 TdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 223 TDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred eccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeecc
Confidence 7666 77777655222211111 23334433333333 3555555554332 22222221 111212 22445555556
Q ss_pred CCeEEEEeCCCcEEEEecCCCeeeEEecC-CCCeeEEEeecC---CeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccC
Q 010296 315 KERVLTVGRDRSMQLWKVPEESRLVFRAP-ASSLECCCFISN---DEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDG 390 (513)
Q Consensus 315 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~---~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 390 (513)
+|.+.++..++.+++-...-.....+... ...+..++..|. ..+.-..+-|.+.+-+-.++..+.......+....
T Consensus 300 dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit 379 (671)
T COG3292 300 DGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNIT 379 (671)
T ss_pred CCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccc
Confidence 78888888887776654321111111111 111112222221 11222222333444444455544443333332222
Q ss_pred CCCcccCcCccccccCCCCCCC--------CCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeee
Q 010296 391 LKNFEQDEGKISNGHSENGNLN--------PGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLY 462 (513)
Q Consensus 391 ~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~ 462 (513)
...+.. .+.+.++...+|-.. +.........+.|..+.-.|+++ |..|+.+|.++. +.+.+ +....+.
T Consensus 380 ~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~-~v~n~ln 455 (671)
T COG3292 380 TTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESG-RVLNLLN 455 (671)
T ss_pred hhhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Ccccc-chhcccc
Confidence 222333 344444433322211 11111233456688888889888 778888885543 22221 1111111
Q ss_pred ---ecCcccEEEEEEeecCCCEEEEEecCCCcccccccC
Q 010296 463 ---NLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHL 498 (513)
Q Consensus 463 ---~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~ 498 (513)
.....+.|..+...|+|++-+++ +. .|..|+..
T Consensus 456 ~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~--gva~~~sq 491 (671)
T COG3292 456 PGSHGLDGSRVEQLGLGPDGRLWLAA-GS--GVAAWESQ 491 (671)
T ss_pred cccCcCCcchhhhhccCCCCceEEEe-cc--eeeeeccc
Confidence 11124457788899999875554 22 35666543
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=95.29 E-value=2.6 Score=39.48 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=88.2
Q ss_pred cCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee--EEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296 304 QSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL--VFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 304 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
...+..+.+.+++.++..+..|.+..-.-..+... ........+..+.+.+++.++..+..|.+++=....+..-...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc
Confidence 45688899999998888888887664311122211 2233446788888989888766667776653223333221111
Q ss_pred ecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeee
Q 010296 382 KNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPL 461 (513)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~ 461 (513)
.... ......+..+.+.|++.++++| .+|.|. .....+ ...+..
T Consensus 252 ~~~~---------------------------------~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G-~tW~~~ 295 (334)
T PRK13684 252 IIPE---------------------------------ITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG-KTWEKD 295 (334)
T ss_pred cCCc---------------------------------cccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC-CCCeEC
Confidence 1000 0011227888999987766555 566554 344433 344433
Q ss_pred ee-cCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 462 YN-LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 462 ~~-~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
.. .......+.+.|..+++.+++ |..|.|..|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~--G~~G~il~~~ 329 (334)
T PRK13684 296 PVGEEVPSNFYKIVFLDPEKGFVL--GQRGVLLRYV 329 (334)
T ss_pred CcCCCCCcceEEEEEeCCCceEEE--CCCceEEEec
Confidence 21 112345778888877776654 5788887764
No 431
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.19 E-value=2.4 Score=38.64 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=78.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcce-eeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEH-IQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG 302 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 302 (513)
..+....++..+++ +..|.|+.= ...|+. ......-.+.+..+..+++|++++++.......-|+.........-..
T Consensus 107 ~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~ 184 (302)
T PF14870_consen 107 FGITALGDGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN 184 (302)
T ss_dssp EEEEEEETTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred eEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC
Confidence 33444344443333 445554332 233322 222334557788899999999888887666667888654333333344
Q ss_pred ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCC-eeeEE-----ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296 303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEE-SRLVF-----RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKK 376 (513)
Q Consensus 303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 376 (513)
....|..|.|.|++.+......|.|++=+.... ..... ......+..+++.+++.+.+++..|.+. .....++
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGk 263 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGK 263 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTS
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCc
Confidence 567899999999998888889999988772221 11111 1223347888999988877777777553 3445554
Q ss_pred e
Q 010296 377 P 377 (513)
Q Consensus 377 ~ 377 (513)
.
T Consensus 264 t 264 (302)
T PF14870_consen 264 T 264 (302)
T ss_dssp S
T ss_pred c
Confidence 3
No 432
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.09 E-value=2.4 Score=37.97 Aligned_cols=218 Identities=13% Similarity=0.160 Sum_probs=117.0
Q ss_pred CeEEEEEecCCCeEEEEeCCCcEEEEeCC------CC-ceeEEeec-----ccCCeEEEEeeCC-------------CeE
Q 010296 264 PVSCLTFRQGTSELFSGSFDRTVKIWNAE------DR-AYISTLFG-----HQSEVLTIDCLRK-------------ERV 318 (513)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~-------------~~~ 318 (513)
.-+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+.. ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888888899999986 12 22333331 1234566666531 247
Q ss_pred EEEeCCCcEEEEecCCCee------eEEecC--CCCeeEEEeecC--C-e-EEEEeCCCCEEEEecCCCCeeEEeecCCC
Q 010296 319 LTVGRDRSMQLWKVPEESR------LVFRAP--ASSLECCCFISN--D-E-FLSGSDDGSIELWSLLRKKPVYIVKNAHP 386 (513)
Q Consensus 319 ~~~~~d~~i~iwd~~~~~~------~~~~~~--~~~v~~~~~~~~--~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 386 (513)
+.++.+|+|.-|...-... +.+... ..-...+++... + . +++--..++|.+||-.-.+.. +.....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--LPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--CCCCcc
Confidence 8899999999998633222 222211 222234444432 2 2 445556788888874433221 010000
Q ss_pred cccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCc
Q 010296 387 LLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPL 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~ 466 (513)
+..+ .....+..+......-.|+-..-.++++.=+.|..-|.|-+||+.-. .++.+..-..
T Consensus 182 -----------DP~i------PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~ 242 (336)
T TIGR03118 182 -----------DPAL------PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGR 242 (336)
T ss_pred -----------CCCC------CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCc
Confidence 0000 00000000000111112333333444445556666789999998764 4444443333
Q ss_pred ccEEEEEEeec------CCCEEEEEecCCCcccccccCCCccc
Q 010296 467 VGFVNSLAFAK------SGQFLIAGVGQEPRLGRWGHLPAARN 503 (513)
Q Consensus 467 ~~~v~~v~~sp------~~~~l~~~~~~dg~v~~W~~~~~~~~ 503 (513)
....+.|+..| .|.+|+-- --||+|..+|...+.-.
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGN-FGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGN-FGDGTINAYDPQSGAQL 284 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEee-cCCceeEEecCCCCcee
Confidence 44556777755 45555555 55999999998766533
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.92 E-value=1.1 Score=45.39 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=52.5
Q ss_pred eEEEEEEe--cCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCC-----CEEEEEecCCCcccccc
Q 010296 424 WVSSVTVC--GGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSG-----QFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 424 ~i~~~~~s--~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~l~~~~~~dg~v~~W~ 496 (513)
.++.++++ ...++||+++....|.||-+..............+...|.+|+|-++. ...+++++-.|.|.+|+
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 48899998 778899999988889998876531222222233466779999998764 23455558999998887
Q ss_pred c
Q 010296 497 H 497 (513)
Q Consensus 497 ~ 497 (513)
.
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=4.8 Score=40.62 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=94.6
Q ss_pred CceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeec-
Q 010296 180 DGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAF- 258 (513)
Q Consensus 180 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~- 258 (513)
--.|+||++.....-..+| .|. .+..+.|+.+. .|++...+|+++||++.. ..+...
T Consensus 63 ~~~I~If~~sG~lL~~~~w-------------------~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~s 120 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILW-------------------KHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNS 120 (829)
T ss_pred ceeEEEEeccccchHHHHh-------------------cCC-CeeeecccCCc-eEEEEeccceEEEeecch-hhhcccc
Confidence 3568888876544333222 222 68889999655 567778899999999753 322221
Q ss_pred ---cCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeec---ccCCeEEEEeeCCCeEEEEeCC-----C-c
Q 010296 259 ---PGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFG---HQSEVLTIDCLRKERVLTVGRD-----R-S 326 (513)
Q Consensus 259 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~d-----~-~ 326 (513)
......|..+.|..+| +++-..+|.+.+-+-.....+..+.. ..-+-.|-...++++-.++..+ + .
T Consensus 121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~ 198 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLH 198 (829)
T ss_pred cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhc
Confidence 2223345555555566 44444456665544322222222221 1111122222233211111100 0 1
Q ss_pred EEEEecCCCeeeEEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 327 MQLWKVPEESRLVFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
+..-+....+...+......+..+.++|+.. ++.-...|.|.+-+....+.+..+..
T Consensus 199 ~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 199 ICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 1111111222223334456788889998876 66778899999998888777776653
No 435
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.74 E-value=4.1 Score=39.03 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=82.5
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-----CCCEEEEEeCCCcE
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-----DGRYLASGGLDRHI 244 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~s~~~dg~i 244 (513)
+...|++|+..|.++||+........ . ..+ ....-..+|..|..-+ ....||+ -.-..+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~----~-~ll----------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl 99 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQP----E-DLL----------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKL 99 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCC----c-cEE----------EEEecCCcEEEEEeccccCCCCcceEEE-ecCCEE
Confidence 44689999999999999985433211 0 000 0122345677776532 2234444 345677
Q ss_pred EEEeCCC--cc-------eeeeccCcCC--CeEEEEEec----C-CCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeE
Q 010296 245 HLWDTRI--QE-------HIQAFPGHRG--PVSCLTFRQ----G-TSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVL 308 (513)
Q Consensus 245 ~vwd~~~--~~-------~~~~~~~~~~--~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 308 (513)
.||.+.. +. .+..+..|.- ....+++-| . ..+|++-+.||.+.+|+-+.......+.. ---..
T Consensus 100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg 178 (418)
T PF14727_consen 100 SVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG 178 (418)
T ss_pred EEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc
Confidence 7887621 11 1122222322 223333333 2 35688899999999999776544444432 22223
Q ss_pred EEEeeCC-CeEEEEeCCCcEEEEec
Q 010296 309 TIDCLRK-ERVLTVGRDRSMQLWKV 332 (513)
Q Consensus 309 ~~~~~~~-~~~~~~~~d~~i~iwd~ 332 (513)
.+.|.+. ..|++++....+.-|..
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecH
Confidence 4556553 57888888888888865
No 436
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.69 E-value=0.37 Score=45.04 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=92.4
Q ss_pred eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCcee-EEee-cccC----CeE-EEEeeCCC-eEEEEeCCC
Q 010296 254 HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYI-STLF-GHQS----EVL-TIDCLRKE-RVLTVGRDR 325 (513)
Q Consensus 254 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~v~-~~~~~~~~-~~~~~~~d~ 325 (513)
.+..+......|..+-..|+|+.|+.-+. ..+.++++.+.... +.+. ...+ .|+ .+.....+ .++++..||
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 34445555667888899999999887665 67888888764431 1221 1111 111 11112233 577888999
Q ss_pred cEEEE-ecCCCeee------EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccC
Q 010296 326 SMQLW-KVPEESRL------VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQD 397 (513)
Q Consensus 326 ~i~iw-d~~~~~~~------~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (513)
.|.-| |.+..... .+......+..+.--.+.+ |++-...|++.++.....+++..-..
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-------------- 356 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-------------- 356 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--------------
Confidence 99887 43332211 1111222333222222222 77778888888776544433322111
Q ss_pred cCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 398 EGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 398 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
...+.-+++||.+.+|++-. .|.|+++.+.+.
T Consensus 357 ------------------------~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 357 ------------------------YQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred ------------------------hcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 11267789999999988754 467999999876
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.63 E-value=0.0084 Score=55.95 Aligned_cols=148 Identities=9% Similarity=0.090 Sum_probs=101.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEe
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
......|-|.+.-++.++.+..+..||- .++.+..+. .++....++|..++..++ .+-..+.+.+|++.+......-
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3445678887777888888888999984 455444443 445566788888877655 5666889999999764321111
Q ss_pred ecccCCeEEEEeeCCCe-EEEEeCCCcEEEEecCCCeeeEEec-CCCCeeEEEeecCCeEEEEeCCCCEEEEe
Q 010296 301 FGHQSEVLTIDCLRKER-VLTVGRDRSMQLWKVPEESRLVFRA-PASSLECCCFISNDEFLSGSDDGSIELWS 371 (513)
Q Consensus 301 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~dg~i~iwd 371 (513)
.+....-.-+.|++... ++.+...+.+.+++..+.+.....+ |...++++++.+.+..+.++.+..+.+-.
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTT 186 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhh
Confidence 11111111256777664 4466678999999998877776666 88899999999999988888777665544
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.56 E-value=1.7 Score=33.69 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=75.3
Q ss_pred EEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcC-----CCCEEEE
Q 010296 163 TAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSS-----DGRYLAS 237 (513)
Q Consensus 163 ~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~s 237 (513)
..-.|......|++++.-|.|.|++.........- ......+..-...|++|+-.+ ....|+.
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~------------~~~~i~~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR------------QDSDISFLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccccccc------------ccCceeEEECCCceEEEEEEecCCCCCcCEEEE
Confidence 44567777778999999999999987654322110 000011223355677776544 3456777
Q ss_pred EeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEec---CCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010296 238 GGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQ---GTSELFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
|+ ...|..||+....-+..- .-...|+++.+-. ...-|+..+.+..|.-||....+...+.
T Consensus 70 Gt-~t~llaYDV~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 70 GT-QTSLLAYDVENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ec-cceEEEEEcccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 77 457999999876654332 2346778887732 2233555555677888887665555443
No 439
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=3.2 Score=36.83 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=91.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee---eeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---
Q 010296 223 ILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI---QAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY--- 296 (513)
Q Consensus 223 v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--- 296 (513)
+..+.++ +++...+..+.-++|.|+.+...- ..+.. .+.-.+ |.-.|++++.+..+.-+.+.|+.+.+.
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 4455665 567777777788999998765432 22221 122333 344578888888777788889876432
Q ss_pred eEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecC---CCCeeEEEeecCCeEEEEeCCCCEEEEecC
Q 010296 297 ISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAP---ASSLECCCFISNDEFLSGSDDGSIELWSLL 373 (513)
Q Consensus 297 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~ 373 (513)
..+..........++.+ .++-..+..++-+.+.|+.......+..+ ...+.++..+++.-+++-...| +.+-|..
T Consensus 164 agrya~~~~d~~~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s 241 (370)
T COG5276 164 AGRYALPGGDTHDVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVS 241 (370)
T ss_pred eeeeccCCCCceeEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecC
Confidence 33343334444455554 23444666888999999987655544433 2356777777765555554444 5666776
Q ss_pred CCCeeEEe
Q 010296 374 RKKPVYIV 381 (513)
Q Consensus 374 ~~~~~~~~ 381 (513)
+.+....+
T Consensus 242 ~~ssp~~~ 249 (370)
T COG5276 242 GPSSPTVF 249 (370)
T ss_pred CCCCceEe
Confidence 66544443
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.52 E-value=0.94 Score=45.44 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=71.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeecc-CcCCCeEEEEE--ecCCCeEEEEeCCCcEEEEeCCC-------
Q 010296 224 LALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFP-GHRGPVSCLTF--RQGTSELFSGSFDRTVKIWNAED------- 293 (513)
Q Consensus 224 ~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~------- 293 (513)
.-+.-|.-++..++-+....+.|||...+.....-. ...+.|..+.| .|+++.+++.+..+.|.+|.-..
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 334444445555555556689999998876443322 35678999998 56889999999999999986421
Q ss_pred --CceeEEe--eccc-CCeEEEEeeCCCeEEEEeCCCcEEEEec
Q 010296 294 --RAYISTL--FGHQ-SEVLTIDCLRKERVLTVGRDRSMQLWKV 332 (513)
Q Consensus 294 --~~~~~~~--~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~ 332 (513)
-..+..+ ..++ .+|....|.++|.+++++ ++.+.|++-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 1122222 2233 578888999999887665 456777764
No 441
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.44 E-value=4.3 Score=37.89 Aligned_cols=158 Identities=13% Similarity=0.168 Sum_probs=85.2
Q ss_pred CCeEEEEee-CCCeEEEEeCCCc------EEEEecCCC----eee------EEecCCC--------CeeEEEeecCCeEE
Q 010296 305 SEVLTIDCL-RKERVLTVGRDRS------MQLWKVPEE----SRL------VFRAPAS--------SLECCCFISNDEFL 359 (513)
Q Consensus 305 ~~v~~~~~~-~~~~~~~~~~d~~------i~iwd~~~~----~~~------~~~~~~~--------~v~~~~~~~~~~~~ 359 (513)
+.+..+.+. .++.+++.+.++. ++.+.+... ..+ .+..... ....+++.+++.|+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 445677777 4667888887777 666655431 111 1111111 33467776777666
Q ss_pred EEeC-C------CCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEec
Q 010296 360 SGSD-D------GSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCG 432 (513)
Q Consensus 360 ~~~~-d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 432 (513)
.+++ + ..|..++.. ++.+..+........... .......+..+-+|+++|
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~----------------------~~~~~~~N~G~E~la~~~ 156 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDAN----------------------GTSGRRNNRGFEGLAVSP 156 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccC----------------------ccccccCCCCeEEEEECC
Confidence 5554 4 467777755 666555532211100000 001123334489999999
Q ss_pred CCCEEEEecC-----CC---------cEEEEEeCCCC--ccee-eeeecC------cccEEEEEEeecCCCEEEEE
Q 010296 433 GSDLAASGAG-----NG---------SVRLWAIESET--KDIQ-PLYNLP------LVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 433 ~~~~l~~g~~-----dg---------~v~vwd~~~~~--~~~~-~~~~~~------~~~~v~~v~~sp~~~~l~~~ 485 (513)
+|+.|+++.. |+ .++|+.+.... .... ..+... ....|+.+.+-+++++|+.=
T Consensus 157 dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 157 DGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred CCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 9996666532 22 15666655331 1122 222222 34668999999999988753
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=2.3 Score=45.63 Aligned_cols=160 Identities=15% Similarity=0.199 Sum_probs=92.0
Q ss_pred EeCCCcEEEEeCCCCceeEEeecccCCeEEEEee-C-C-------CeEEEEeCCCcEEEEecCC----Cee------eEE
Q 010296 280 GSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCL-R-K-------ERVLTVGRDRSMQLWKVPE----ESR------LVF 340 (513)
Q Consensus 280 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~-~-------~~~~~~~~d~~i~iwd~~~----~~~------~~~ 340 (513)
.+.|+.+.+|+..++.....+.+....|..+... | . ..+++.+.--.|.++-+.- ... ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3458899999999977777776666666666542 2 1 2345555555566654421 111 122
Q ss_pred ecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCC-C
Q 010296 341 RAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHS-S 419 (513)
Q Consensus 341 ~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~ 419 (513)
......|.|+....+|+++.++.||.|+-.-..... .-+. ..-.++....+....+.+..+.. .
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~--gWf~-------------~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAED--GWFG-------------SRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccC--chhh-------------cccccccCchhHHHHhhhhhhcCCC
Confidence 234567888888889998888888844322221110 0000 00000111111111111111111 2
Q ss_pred CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.+..+|..+++.....+|.+-+..|+|.+|++...
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 45667999999999999999999999999999873
No 443
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.43 E-value=1.7 Score=43.71 Aligned_cols=108 Identities=10% Similarity=0.166 Sum_probs=70.6
Q ss_pred CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEee-cccCCeEEEEeeC--CC-eEEEEeCCCcEEEEecCC-----
Q 010296 264 PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLF-GHQSEVLTIDCLR--KE-RVLTVGRDRSMQLWKVPE----- 334 (513)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~~~----- 334 (513)
.+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|.. ++ .+++.|..+.|.+|.-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444444444444455556689999999887543322 3578899999964 55 566999999999985421
Q ss_pred C-------eeeEEec-CCCCeeEEEeecCCeEEEEeCCCCEEEEec
Q 010296 335 E-------SRLVFRA-PASSLECCCFISNDEFLSGSDDGSIELWSL 372 (513)
Q Consensus 335 ~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~ 372 (513)
. +.+.... ...+|....|.++|.+++|+. +.+.|++-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 1 1111222 336788999999999888764 45788774
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.39 E-value=0.55 Score=40.70 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=54.7
Q ss_pred ECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010296 167 LSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHL 246 (513)
Q Consensus 167 ~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 246 (513)
+..++.+|++.+.+|.+++||+.+++.+..-.+-..++..... .-......|..+.++.+|.-|++-+ +|..+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~-----~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPV-----SDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccc-----ccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 4457889999999999999999998765432111111211100 0004567799999998888777765 588999
Q ss_pred EeCCCccee
Q 010296 247 WDTRIQEHI 255 (513)
Q Consensus 247 wd~~~~~~~ 255 (513)
|+..-+.-+
T Consensus 92 y~~~L~~W~ 100 (219)
T PF07569_consen 92 YSPDLGCWI 100 (219)
T ss_pred eccccceeE
Confidence 987644433
No 445
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.31 E-value=0.2 Score=29.91 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=26.1
Q ss_pred CCeEEEEECCCC---CeEEEEeCCceEEEEeCCC
Q 010296 160 QSVTAVALSEDD---SKGFSASKDGSILHWDVSS 190 (513)
Q Consensus 160 ~~V~~~~~s~~~---~~l~t~~~dg~v~iwd~~~ 190 (513)
++|.+|.|+|.. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 4888888889999999985
No 446
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.11 E-value=0.13 Score=30.63 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=26.5
Q ss_pred cEEEEEEeecCCC---EEEEEecCCCcccccccCCCc
Q 010296 468 GFVNSLAFAKSGQ---FLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 468 ~~v~~v~~sp~~~---~l~~~~~~dg~v~~W~~~~~~ 501 (513)
+.|.++.|||... +|+.+ -.-|.|.++|...+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~-E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWA-EHQGRVHIVDTRSNF 36 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEE-ccCCeEEEEEcccCc
Confidence 4689999998654 77777 888999999998644
No 447
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.02 E-value=7.3 Score=39.00 Aligned_cols=252 Identities=12% Similarity=0.139 Sum_probs=120.8
Q ss_pred CCCCCeEEEEeCCceEEEEeCCCCcc-ccccCCChhhhccCCCCCCCCCCCCC-cccEEEEEEcCCC-CEEEEEeC--CC
Q 010296 168 SEDDSKGFSASKDGSILHWDVSSGKG-VKYLWPSEEVLKSHGAKDPQGRATKQ-SKHILALAVSSDG-RYLASGGL--DR 242 (513)
Q Consensus 168 s~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~s~~~--dg 242 (513)
..++..++.+..+|.+....+..... +.. ...+. .....++.+..++ .+|+.|+. |+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i------------------~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds 280 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISI------------------TYLGTLCSIASSLTYLKNGGDYLFVGSEFGDS 280 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEE------------------EEEEE--S-ESEEEEESTT--EEEEEESSS-E
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEE------------------EEcCCcCChhheEEEEcCCCEEEEEEEecCCc
Confidence 55677888999999988877765331 100 00111 3345566666554 36777765 45
Q ss_pred cEEEEeCCCcceeeeccCcCCCeEEEEEecC----CC------eEEEEe---CCCcEEEEeCCCCce--eEEeecc--cC
Q 010296 243 HIHLWDTRIQEHIQAFPGHRGPVSCLTFRQG----TS------ELFSGS---FDRTVKIWNAEDRAY--ISTLFGH--QS 305 (513)
Q Consensus 243 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~ 305 (513)
.+..|....-+.+..+. .-++|..+++.+. .. .|++++ .+|.+++..-.-+-. ....... -.
T Consensus 281 ~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~ 359 (504)
T PF10433_consen 281 QLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVT 359 (504)
T ss_dssp EEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEE
T ss_pred EEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCce
Confidence 55556644555666666 5578999988532 12 566554 467888875321111 1111112 22
Q ss_pred CeEEEEeeC-CCeEEEEeCCCcEEEEecC---CCeee-EEe--cC--CCCeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296 306 EVLTIDCLR-KERVLTVGRDRSMQLWKVP---EESRL-VFR--AP--ASSLECCCFISNDEFLSGSDDGSIELWSLLRKK 376 (513)
Q Consensus 306 ~v~~~~~~~-~~~~~~~~~d~~i~iwd~~---~~~~~-~~~--~~--~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 376 (513)
.++.+.... +..++..+....-+++.+. ....+ ... +- ...-..+....++.++=.+..+ |++.+...++
T Consensus 360 ~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~-i~l~~~~~~~ 438 (504)
T PF10433_consen 360 GIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKG-IRLIDLEDGK 438 (504)
T ss_dssp EEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSE-EEEEESSSTS
T ss_pred EEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCe-EEEEECCCCe
Confidence 344444332 1344444444455555553 12221 110 11 1112223333355566454444 7888877777
Q ss_pred eeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCc
Q 010296 377 PVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETK 456 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~ 456 (513)
....+..... ..|.+.++.. .+++.+..++.+.++.+.....
T Consensus 439 ~~~~w~~~~~------------------------------------~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 439 LTQEWKPPAG------------------------------------SIIVAASIND--PQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp EEEEEE-TTS---------------------------------------SEEEESS--SEEEEEE-TTEEEEEEEETTEE
T ss_pred EEEEEeCCCC------------------------------------CeEEEEEECC--CEEEEEEeCCcEEEEEEECCce
Confidence 7666543221 1155555543 4677777788899999987622
Q ss_pred ceeeeeec--CcccEEEEEEeec
Q 010296 457 DIQPLYNL--PLVGFVNSLAFAK 477 (513)
Q Consensus 457 ~~~~~~~~--~~~~~v~~v~~sp 477 (513)
........ .....|.|+..+|
T Consensus 481 ~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 481 SVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEEE----EE-SS-EEEEE---
T ss_pred eeeeeccccccCCCceEEEEeCC
Confidence 21211110 1356788888776
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.87 E-value=0.76 Score=43.77 Aligned_cols=84 Identities=11% Similarity=0.167 Sum_probs=59.9
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCC-eEEEEEecC-C----------------Ce-EE
Q 010296 218 KQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGP-VSCLTFRQG-T----------------SE-LF 278 (513)
Q Consensus 218 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~----------------~~-l~ 278 (513)
.....+.+|+.+|.+++.|+...-|.|.++|+.++..++.+++.... +.-+..... . .+ ++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34556899999999998888877899999999999999888875433 211111111 1 11 23
Q ss_pred EEeCCCcEEEEeCCCCceeEEee
Q 010296 279 SGSFDRTVKIWNAEDRAYISTLF 301 (513)
Q Consensus 279 ~~~~dg~i~iwd~~~~~~~~~~~ 301 (513)
-+-.-|.|-||.++++..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 45668899999999888777664
No 449
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.75 E-value=0.032 Score=51.55 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=7.8
Q ss_pred CCCCEEEEEeCC
Q 010296 230 SDGRYLASGGLD 241 (513)
Q Consensus 230 ~~~~~l~s~~~d 241 (513)
|+..=||+|+.|
T Consensus 190 PDSTDFVCGTLD 201 (458)
T PF10446_consen 190 PDSTDFVCGTLD 201 (458)
T ss_pred CCcccccCCCcC
Confidence 466667777654
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.69 E-value=0.48 Score=41.03 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.1
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCcee
Q 010296 270 FRQGTSELFSGSFDRTVKIWNAEDRAYI 297 (513)
Q Consensus 270 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 297 (513)
+..++.+|++.+.+|.+++||+.+++.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4567889999999999999999987764
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=8.4 Score=41.67 Aligned_cols=135 Identities=12% Similarity=0.177 Sum_probs=85.0
Q ss_pred CCCcEEEEeCCCcceeeeccCcCCCeEEEEE--------ecCCCeEEEEeCCCcEEEEeCC----CCce---e--EEeec
Q 010296 240 LDRHIHLWDTRIQEHIQAFPGHRGPVSCLTF--------RQGTSELFSGSFDRTVKIWNAE----DRAY---I--STLFG 302 (513)
Q Consensus 240 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iwd~~----~~~~---~--~~~~~ 302 (513)
.|+.+.+|+.+++.....+.+-...|..+.. -|.=++++..+.--.|.++-+. ++.. . .++..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 4788999999998877777776666766654 2233445544444456665432 1111 1 12223
Q ss_pred ccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCe------e-----------------eEEe-cCCCCeeEEEeecCCe-
Q 010296 303 HQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEES------R-----------------LVFR-APASSLECCCFISNDE- 357 (513)
Q Consensus 303 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~------~-----------------~~~~-~~~~~v~~~~~~~~~~- 357 (513)
....|.++....+|+++.+|.||.|+-.-..... + ..+. .+..+|..+.+.....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 4557889998889999999999955433221110 0 0122 3355778887766554
Q ss_pred EEEEeCCCCEEEEecCC
Q 010296 358 FLSGSDDGSIELWSLLR 374 (513)
Q Consensus 358 ~~~~~~dg~i~iwd~~~ 374 (513)
+.+-+..|+|.+|++..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 55888999999999976
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.47 E-value=2.1 Score=39.95 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.2
Q ss_pred CeeEEEeecCCeEEEEeCCCCEEEEecCCCC
Q 010296 346 SLECCCFISNDEFLSGSDDGSIELWSLLRKK 376 (513)
Q Consensus 346 ~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~ 376 (513)
..+.++|.|+|.++++...|.|++++ ..+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~ 32 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGS 32 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCc
Confidence 35788999999988888899999999 4443
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=3.3 Score=39.07 Aligned_cols=142 Identities=6% Similarity=0.040 Sum_probs=87.8
Q ss_pred EEEeeCCCeEEEEeCCCcEEEEecCCCee---e-EEecCCCCeeEEEeecCCe-EEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 309 TIDCLRKERVLTVGRDRSMQLWKVPEESR---L-VFRAPASSLECCCFISNDE-FLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 309 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---~-~~~~~~~~v~~~~~~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
.+-|...++.+.+...|.+.-|-...... . .-....++|.++.|+++++ +++--.+..|.+++....++......
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 34444445555555555566665543221 1 1223345899999999997 66778899999998754433322221
Q ss_pred CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeee
Q 010296 384 AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYN 463 (513)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~ 463 (513)
.+ ......|...+|+.+ .-+|.-+..| |.+|.+....+.++....
T Consensus 107 ~c---------------------------------k~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks 151 (657)
T KOG2377|consen 107 EC---------------------------------KTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS 151 (657)
T ss_pred Hh---------------------------------ccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhh
Confidence 11 111222888899877 4455555444 888888776555555554
Q ss_pred cCcccEEEEEEeecCCCEEEEEec
Q 010296 464 LPLVGFVNSLAFAKSGQFLIAGVG 487 (513)
Q Consensus 464 ~~~~~~v~~v~~sp~~~~l~~~~~ 487 (513)
+.-.|+-..|+++-+.++.+++
T Consensus 152 --~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 152 --HNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred --cccCccEEEEccccceEeeecc
Confidence 6667888899999887776655
No 454
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.31 E-value=7.7 Score=36.99 Aligned_cols=149 Identities=13% Similarity=0.041 Sum_probs=89.8
Q ss_pred EEEEEeCCCcEEEEeCCCcceeeeccCc--CCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeeccc-CCeEEE
Q 010296 234 YLASGGLDRHIHLWDTRIQEHIQAFPGH--RGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQ-SEVLTI 310 (513)
Q Consensus 234 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~ 310 (513)
.++.+..+|.|.-.|..++..+.....- ...+.+-.+..+|+ |+.++.++.++.+|..+++.+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4555577888888888888865433322 12333333333555 8888889999999999998887776544 111222
Q ss_pred EeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCC----CCeeEEEeecCCeEEEEeC--CCCEEEEecCCCCeeEEeec
Q 010296 311 DCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA----SSLECCCFISNDEFLSGSD--DGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 311 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~--dg~i~iwd~~~~~~~~~~~~ 383 (513)
....++.++..+.++.+.-.+..++......... ..+........+.++.+.. ++.+.-.+..++......+.
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~ 227 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKV 227 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeee
Confidence 2223566666667788888888877765322211 1111111133445555555 66777788888887776543
No 455
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.31 E-value=7.7 Score=36.98 Aligned_cols=192 Identities=10% Similarity=0.061 Sum_probs=107.7
Q ss_pred eEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q 010296 173 KGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQ 252 (513)
Q Consensus 173 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~ 252 (513)
.++++..+|.|.-.|..++..+..... ......+.+-.+..+|+ |+.++.++.++.+|..+|
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~-----------------~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G 131 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPL-----------------LGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTG 131 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccC-----------------cCcceeccCceEEeCCe-EEEecccceEEEEECCCC
Confidence 455557788888888888775532200 00011111112222565 777888899999999889
Q ss_pred ceeeeccCcC-CCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC---CeEEEEeeCCCeEEEEeC--CCc
Q 010296 253 EHIQAFPGHR-GPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS---EVLTIDCLRKERVLTVGR--DRS 326 (513)
Q Consensus 253 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~--d~~ 326 (513)
+.+..+.... ..+..-....++ .++.++.++.+...+..++..+........ .+..-....++.++.+.. ++.
T Consensus 132 ~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~ 210 (370)
T COG1520 132 TLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGI 210 (370)
T ss_pred cEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcce
Confidence 8887776554 111111222233 344444789999999988887766443221 111111123455665555 556
Q ss_pred EEEEecCCCeeeEEecCCCC-----e------eEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeec
Q 010296 327 MQLWKVPEESRLVFRAPASS-----L------ECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKN 383 (513)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~-----v------~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (513)
+.-+++.++........... + ..-...-++.+..++.++.+...+..+++.+..+..
T Consensus 211 ~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 211 LYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 77777766665522111111 1 111111233356777888899999999998888764
No 456
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=1.5 Score=41.33 Aligned_cols=120 Identities=8% Similarity=0.112 Sum_probs=80.5
Q ss_pred ccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLA 236 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 236 (513)
...++|.+|.||+|.+.||+--.+.+|.+++.........+ . ......+..|....|+.+ .-+|
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~-----~----------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY-----T----------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH-----H----------HHhccCcceeEEEEEecC-eeEE
Confidence 45789999999999999999999999999998544433221 0 012233456899999866 5566
Q ss_pred EEeCCCcEEEEeCCC-cceeeeccCcCCCeEEEEEecCCCeEEEEe--CCCcEEEEeCCC
Q 010296 237 SGGLDRHIHLWDTRI-QEHIQAFPGHRGPVSCLTFRQGTSELFSGS--FDRTVKIWNAED 293 (513)
Q Consensus 237 s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 293 (513)
.-+..| +-+|.... ...++..+.|...|+-..|.++.+.++.++ ..+++.=+.+++
T Consensus 128 ~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 666444 66766543 344556677888999999999887755443 233443344443
No 457
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.15 E-value=5.7 Score=34.99 Aligned_cols=153 Identities=11% Similarity=-0.002 Sum_probs=98.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEE--
Q 010296 222 HILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYIST-- 299 (513)
Q Consensus 222 ~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 299 (513)
.-..++-.|||..-+++...+.|--.|..+|+....--+....-..|..-|++..-++-+.. .|.-.|-++.....-
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 35567888999988898888999999999998776655556666788888888766654433 566666655543221
Q ss_pred -eecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCC-CCeeEEEeecCCeEE-EEeCCCCEEEEecCCC
Q 010296 300 -LFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPA-SSLECCCFISNDEFL-SGSDDGSIELWSLLRK 375 (513)
Q Consensus 300 -~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~dg~i~iwd~~~~ 375 (513)
............|.+.|.+...+..|.---.|..+....++..+. .....++..|+|.+. +.-.+..|-..|..++
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 122334567778888887775555444333444444443443332 345678888998744 4445666766676665
No 458
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.11 E-value=5.2 Score=38.98 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=26.1
Q ss_pred eEEEEEEecCCCEEEEecCCCcEEEEEeCCC
Q 010296 424 WVSSVTVCGGSDLAASGAGNGSVRLWAIESE 454 (513)
Q Consensus 424 ~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~ 454 (513)
.|.+++..+..++|++.+.+|.|.+|++..+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 3999999999999999999999999999853
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=6.4 Score=35.07 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=91.9
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEE
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASG 238 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 238 (513)
.+.+..+.++. .+...+..+.-++|.|+.+......+ ......+--+++.. .|++..++
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~-----------------~~lnt~gyaygv~v--sGn~aYVa 144 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLI-----------------GFLNTDGYAYGVYV--SGNYAYVA 144 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCccee-----------------ccccCCceEEEEEe--cCCEEEEe
Confidence 34455566654 56666667778999999877654322 00011122344444 48898888
Q ss_pred eCCCcEEEEeCCCcc---eeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCce---eEEeecccCCeEEEEe
Q 010296 239 GLDRHIHLWDTRIQE---HIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAY---ISTLFGHQSEVLTIDC 312 (513)
Q Consensus 239 ~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~ 312 (513)
..+.-+.+.|+.+.. +...+.......+.++.+ |++-+.+..|+-+.+.|+..... +.... ....+.++..
T Consensus 145 dlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~v 221 (370)
T COG5276 145 DLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSV 221 (370)
T ss_pred eccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEe
Confidence 877778888886543 333444344444566665 66788888999999999976533 22222 3336677776
Q ss_pred eCCCeEEEEeCCCcEEEEecCCCee
Q 010296 313 LRKERVLTVGRDRSMQLWKVPEESR 337 (513)
Q Consensus 313 ~~~~~~~~~~~d~~i~iwd~~~~~~ 337 (513)
+++..+++.. +.-+.+-|..+.+.
T Consensus 222 sdnr~y~vvy-~egvlivd~s~~ss 245 (370)
T COG5276 222 SDNRAYLVVY-DEGVLIVDVSGPSS 245 (370)
T ss_pred cCCeeEEEEc-ccceEEEecCCCCC
Confidence 6554444433 44466666665553
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.78 E-value=10 Score=36.90 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=37.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcce--eeecc-----CcCCCeEEEEEecCC
Q 010296 221 KHILALAVSSDGRYLASGGLDRHIHLWDTRIQEH--IQAFP-----GHRGPVSCLTFRQGT 274 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 274 (513)
...+.|+|.|+|++|++--..|.|++++..++.. +..+. ...+....|+|+|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3478899999998777765569999998655432 22221 135678899999873
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.76 E-value=1.7 Score=36.17 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=25.8
Q ss_pred eEEEEEEecCC------CEEEEecCCCcEEEEEeCC
Q 010296 424 WVSSVTVCGGS------DLAASGAGNGSVRLWAIES 453 (513)
Q Consensus 424 ~i~~~~~s~~~------~~l~~g~~dg~v~vwd~~~ 453 (513)
.+..++|||.| -+|++.+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 59999999955 4788999999999999764
No 462
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=5.5 Score=33.51 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEE-EEeCCCcEEEEeCCCCceeEEeecccCCe
Q 010296 231 DGRYLASGGL--DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELF-SGSFDRTVKIWNAEDRAYISTLFGHQSEV 307 (513)
Q Consensus 231 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 307 (513)
+|.++.+.+. ...|++|++.+++.+..-+-....+..=-...-+.++. ..-.+|...++|.++.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4556666553 35699999999987765442212222222222233333 33457888999999888877664 44555
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEecCCCeee---EEecCC---CCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEe
Q 010296 308 LTIDCLRKERVLTVGRDRSMQLWKVPEESRL---VFRAPA---SSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIV 381 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~~---~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 381 (513)
+.++.. +..++.+....+++.-|..+-... ...... ..+.-+.|.....++-.-....|...+..+|+.+..+
T Consensus 134 WgLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 555543 234555555566666665543221 111112 2233344443333444445566777788888887776
Q ss_pred ec
Q 010296 382 KN 383 (513)
Q Consensus 382 ~~ 383 (513)
..
T Consensus 213 dl 214 (262)
T COG3823 213 DL 214 (262)
T ss_pred Ec
Confidence 54
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=11 Score=36.63 Aligned_cols=81 Identities=9% Similarity=0.050 Sum_probs=54.9
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEe---------CCCcceee---ec-------c-CcCCCeEEEEEecCC---Ce
Q 010296 220 SKHILALAVSSDGRYLASGGLDRHIHLWD---------TRIQEHIQ---AF-------P-GHRGPVSCLTFRQGT---SE 276 (513)
Q Consensus 220 ~~~v~~~~~s~~~~~l~s~~~dg~i~vwd---------~~~~~~~~---~~-------~-~~~~~v~~~~~~~~~---~~ 276 (513)
.-.|..+..++.|..++-.+.+|.+.++= ++.|+.+. ++ . ...-.+..++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 45688899999999999888898766543 12332211 11 1 111235667899975 67
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEe
Q 010296 277 LFSGSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 277 l~~~~~dg~i~iwd~~~~~~~~~~ 300 (513)
|..-+.|+.|++|++.....+...
T Consensus 183 L~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEEEecCcEEEEEecCCcchhhcc
Confidence 888889999999999876665443
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.55 E-value=5.9 Score=33.66 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=63.0
Q ss_pred CEEEEEeCCCcEEEEeCC--CcceeeeccCcCCCeEEEEEecCCCeEEEEeCC---C---cEEEE---eCC--CCceeE-
Q 010296 233 RYLASGGLDRHIHLWDTR--IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFD---R---TVKIW---NAE--DRAYIS- 298 (513)
Q Consensus 233 ~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~--~~~~~~- 298 (513)
..|+.+...+.|.+|++. ..+....|.. -+.|..+.++..|++|+|--.+ . .+++| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 445444556789999988 3345666664 4789999999999999986432 2 56665 211 111111
Q ss_pred Eeec---------------------ccCCeEEEEeeC-CCeEEEEeCCCcEEEEecCCCe
Q 010296 299 TLFG---------------------HQSEVLTIDCLR-KERVLTVGRDRSMQLWKVPEES 336 (513)
Q Consensus 299 ~~~~---------------------~~~~v~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~ 336 (513)
.+.| -..++.+++..| .|.+++++ ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 1111 234567777777 56666655 4678888876443
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.34 E-value=1.4 Score=36.68 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=25.0
Q ss_pred ccEEEEEEcCCC------CEEEEEeCCCcEEEEeCC
Q 010296 221 KHILALAVSSDG------RYLASGGLDRHIHLWDTR 250 (513)
Q Consensus 221 ~~v~~~~~s~~~------~~l~s~~~dg~i~vwd~~ 250 (513)
..|..++|||.| -+|++.+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 379999999954 378888999999999865
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.98 E-value=12 Score=35.88 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=84.4
Q ss_pred eEEEEeeCCCeEEEEeCCCcEEE-EecCCCe-eeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCe-----eE
Q 010296 307 VLTIDCLRKERVLTVGRDRSMQL-WKVPEES-RLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKP-----VY 379 (513)
Q Consensus 307 v~~~~~~~~~~~~~~~~d~~i~i-wd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~-----~~ 379 (513)
...+...+++.++..+..|.+.. |+--... ..........+..+.+.+++.++..+..|.+.. ....++. ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCccccccee
Confidence 34455567777777777776554 3322111 223334455678888989988877777777544 3333331 11
Q ss_pred EeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCccee
Q 010296 380 IVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQ 459 (513)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~ 459 (513)
.... ......++.+.|.+++..+++| ..|.|.... ..+ +..+
T Consensus 320 ~~~~-----------------------------------~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G-~tW~ 361 (398)
T PLN00033 320 EADI-----------------------------------KSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG-KSWK 361 (398)
T ss_pred eccc-----------------------------------CCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC-ccee
Confidence 1111 0011228889999887766655 466555543 333 4444
Q ss_pred eeee-cCcccEEEEEEeecCCCEEEEEecCCCccccc
Q 010296 460 PLYN-LPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRW 495 (513)
Q Consensus 460 ~~~~-~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W 495 (513)
.... -........+.|.++++.++++ .+|.|..|
T Consensus 362 ~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~ 396 (398)
T PLN00033 362 RDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY 396 (398)
T ss_pred EccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence 3321 1234568899998887766665 77777555
No 467
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.83 E-value=18 Score=37.67 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=48.5
Q ss_pred CCeEEEEEecCCCeEEEEeCCCcEEEEeCCC-CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe
Q 010296 263 GPVSCLTFRQGTSELFSGSFDRTVKIWNAED-RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR 341 (513)
Q Consensus 263 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 341 (513)
..|..|.++|+|.+|+..|..| |.|..+.. ......+.+....+.|-.+.=+..++. .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--------------------~ 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--------------------S 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--------------------C
Confidence 4688889999999999888755 44444432 111112222222333322221221111 1
Q ss_pred cCCCCeeEEEeecCC----eEEEEeCCCCEEEEecCC
Q 010296 342 APASSLECCCFISND----EFLSGSDDGSIELWSLLR 374 (513)
Q Consensus 342 ~~~~~v~~~~~~~~~----~~~~~~~dg~i~iwd~~~ 374 (513)
.+...|..+.|+|.+ .|++-+.|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 222345566777653 366777777777777765
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.38 E-value=11 Score=34.07 Aligned_cols=220 Identities=14% Similarity=0.165 Sum_probs=117.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCC------Cc-ceeeeccC-----cCCCeEEEEEecCCC------------e
Q 010296 221 KHILALAVSSDGRYLASGGLDRHIHLWDTR------IQ-EHIQAFPG-----HRGPVSCLTFRQGTS------------E 276 (513)
Q Consensus 221 ~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~ 276 (513)
..-+.|+++|.+.+-++....+...+||.. .. .++.++.. .....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 346789999999888888788999999986 11 22333332 224567777764322 2
Q ss_pred EEEEeCCCcEEEEeCCCCce-----eEEee-cccCCeE-EEEeeC--CC-eEEEE-eCCCcEEEEecCCCeeeE---Eec
Q 010296 277 LFSGSFDRTVKIWNAEDRAY-----ISTLF-GHQSEVL-TIDCLR--KE-RVLTV-GRDRSMQLWKVPEESRLV---FRA 342 (513)
Q Consensus 277 l~~~~~dg~i~iwd~~~~~~-----~~~~~-~~~~~v~-~~~~~~--~~-~~~~~-~~d~~i~iwd~~~~~~~~---~~~ 342 (513)
++.++.||+|.-|...-... ...+. ...+.|+ .+++.. .+ .|+++ -..++|-+||-.-..... +..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999998543221 12222 1123342 344432 22 34433 357888888754332211 111
Q ss_pred CC----CCeeEEEe------------ecCCe-EEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCcccccc
Q 010296 343 PA----SSLECCCF------------ISNDE-FLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGH 405 (513)
Q Consensus 343 ~~----~~v~~~~~------------~~~~~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 405 (513)
+. .....+.. .++++ =+.|..-|.|-+||+ .+..++++.....
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~------------------- 242 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGR------------------- 242 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCc-------------------
Confidence 10 00001111 11111 223344567888885 4555555532211
Q ss_pred CCCCCCCCCCcCCCCCcceEEEEEEec------CCCEEEEecCCCcEEEEEeCCCCcceeeeeecC----cccEEEEEEe
Q 010296 406 SENGNLNPGSYHSSSAYSWVSSVTVCG------GSDLAASGAGNGSVRLWAIESETKDIQPLYNLP----LVGFVNSLAF 475 (513)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~----~~~~v~~v~~ 475 (513)
....+.|+..| .+.+|+---.||+|..||..++. .+-.+.... ....++.|+|
T Consensus 243 ----------------LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~-~~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 243 ----------------LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA-QLGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred ----------------ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc-eeeeecCCCCCeEEecCeEEeee
Confidence 11145555544 45677766689999999998873 222222211 1234678888
Q ss_pred ec
Q 010296 476 AK 477 (513)
Q Consensus 476 sp 477 (513)
-.
T Consensus 306 Gn 307 (336)
T TIGR03118 306 GN 307 (336)
T ss_pred CC
Confidence 65
No 469
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.34 E-value=12 Score=34.78 Aligned_cols=102 Identities=10% Similarity=0.112 Sum_probs=47.2
Q ss_pred CCCeEEEEeCC-----CcEEEEeCCCCcee---EEeecccCCe--EEEEeeCCCeE-EEEeC-----CCcEEEEecCCCe
Q 010296 273 GTSELFSGSFD-----RTVKIWNAEDRAYI---STLFGHQSEV--LTIDCLRKERV-LTVGR-----DRSMQLWKVPEES 336 (513)
Q Consensus 273 ~~~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~-~~~~~-----d~~i~iwd~~~~~ 336 (513)
++..++.|+.+ ..+..||+.+.... ..+.....+. .+++.. ++.+ +.++. ...+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 44555666654 35777787765531 2221111111 222233 4444 45553 2467888887665
Q ss_pred eeEEec-CC-CCeeEEEeecCCe-EEEEeCCCC----EEEEecCCC
Q 010296 337 RLVFRA-PA-SSLECCCFISNDE-FLSGSDDGS----IELWSLLRK 375 (513)
Q Consensus 337 ~~~~~~-~~-~~v~~~~~~~~~~-~~~~~~dg~----i~iwd~~~~ 375 (513)
-..... +. ......+...+++ ++.|+.++. +.+||..+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 333221 11 1122222233444 566765542 346666554
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.06 E-value=13 Score=34.63 Aligned_cols=120 Identities=19% Similarity=0.305 Sum_probs=68.8
Q ss_pred cCCCeEEEEECCCCCeEEEEeCCce------EEEEeCCCCc-cccccCCChhhhccCCCCCCCC-CCCCCcccEEEEEEc
Q 010296 158 HRQSVTAVALSEDDSKGFSASKDGS------ILHWDVSSGK-GVKYLWPSEEVLKSHGAKDPQG-RATKQSKHILALAVS 229 (513)
Q Consensus 158 h~~~V~~~~~s~~~~~l~t~~~dg~------v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s 229 (513)
.-+.++.|.+.|++..+++.+.+|. +..+.+.... ....+ ..........+.. .+..-.-..-+|++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~~~G~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGV----TILDMIPLRDPDGQPFPKNGLDPEGIAVP 93 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccce----EeccceeccCCCCCcCCcCCCChhHeEEe
Confidence 3577899999976667777777777 6666655411 11000 0000000011100 011111135578887
Q ss_pred CCCCEEEEEeCC------CcEEEEeCCCcceeeecc---------------CcCCCeEEEEEecCCCeEEEEeC
Q 010296 230 SDGRYLASGGLD------RHIHLWDTRIQEHIQAFP---------------GHRGPVSCLTFRQGTSELFSGSF 282 (513)
Q Consensus 230 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 282 (513)
+++.++++.=.+ ..|+.++.. |+.+..+. .....+.+|+++|+|+.|+++..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 788887776666 788888866 65543331 13456889999999997776543
No 471
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.99 E-value=6 Score=39.92 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=49.4
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeC
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNA 291 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 291 (513)
....++++.-+|.+..++.++.||.|++|+........... ...+-..+.|...| |+++..|..+.-|.-
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence 34558889999999999999999999999976544322221 22334456676655 777777887777764
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.72 E-value=4.1 Score=34.60 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=66.9
Q ss_pred eeEEEeecCCeEEEEeCCCCEEEEecCC--CCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcce
Q 010296 347 LECCCFISNDEFLSGSDDGSIELWSLLR--KKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSW 424 (513)
Q Consensus 347 v~~~~~~~~~~~~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 424 (513)
...++....+.++.+...+.|.+|++.+ ..++..+... +.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--------------------------------------~~ 61 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV--------------------------------------GR 61 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch--------------------------------------hh
Confidence 3344444545555557788899999883 3455555432 22
Q ss_pred EEEEEEecCCCEEEEecCC---C---cEEEE---EeC-CCCccee--------------------eeeecCcccEEEEEE
Q 010296 425 VSSVTVCGGSDLAASGAGN---G---SVRLW---AIE-SETKDIQ--------------------PLYNLPLVGFVNSLA 474 (513)
Q Consensus 425 i~~~~~s~~~~~l~~g~~d---g---~v~vw---d~~-~~~~~~~--------------------~~~~~~~~~~v~~v~ 474 (513)
|..+.++..|+||+|-=.+ . .+|+| ... ....++. .+..+|...++.+++
T Consensus 62 V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~cia 141 (215)
T PF14761_consen 62 VLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIA 141 (215)
T ss_pred eeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEE
Confidence 8899999999999986322 2 56664 222 1111111 111223455778888
Q ss_pred eecCCCEEEEEecCCCcccccccCC
Q 010296 475 FAKSGQFLIAGVGQEPRLGRWGHLP 499 (513)
Q Consensus 475 ~sp~~~~l~~~~~~dg~v~~W~~~~ 499 (513)
-.|-..-|++|+ +.++.+|....
T Consensus 142 CC~~tG~LlVg~--~~~l~lf~l~~ 164 (215)
T PF14761_consen 142 CCPVTGNLLVGC--GNKLVLFTLKY 164 (215)
T ss_pred ecCCCCCEEEEc--CCEEEEEEEEE
Confidence 888766666662 34788886543
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=7.2 Score=42.28 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=27.5
Q ss_pred CCCeEEEEECCCCCeEEEEeCCceEEEEeCCC
Q 010296 159 RQSVTAVALSEDDSKGFSASKDGSILHWDVSS 190 (513)
Q Consensus 159 ~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~ 190 (513)
......++|+|.-.++|.+...|.|++|-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 44677899999999999999999999987654
No 474
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.35 E-value=18 Score=34.88 Aligned_cols=142 Identities=11% Similarity=0.183 Sum_probs=83.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCcc-----eeeeccCcCCCeEEEEEec----CCCeEEEEeCCCcEEEEeCCC--Cc-----
Q 010296 232 GRYLASGGLDRHIHLWDTRIQE-----HIQAFPGHRGPVSCLTFRQ----GTSELFSGSFDRTVKIWNAED--RA----- 295 (513)
Q Consensus 232 ~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~--~~----- 295 (513)
...+++|+..|.++||+..... .+...+ -..+|..+..-. .....++.-.-..+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4589999999999999985433 111111 345777776532 223344445677888888732 11
Q ss_pred --eeEEeeccc--CCeEEEEeeC----C--CeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCC-eEEEEeCC
Q 010296 296 --YISTLFGHQ--SEVLTIDCLR----K--ERVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISND-EFLSGSDD 364 (513)
Q Consensus 296 --~~~~~~~~~--~~v~~~~~~~----~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d 364 (513)
.+..+..|. .....+++-| . ..+.+-+.||.+.+|+-..-....+....--...+++.+.. .|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 122222232 2233344333 2 24557889999999997655433333332223345566554 58899999
Q ss_pred CCEEEEecCC
Q 010296 365 GSIELWSLLR 374 (513)
Q Consensus 365 g~i~iwd~~~ 374 (513)
..+..|....
T Consensus 196 ~~l~~Yky~~ 205 (418)
T PF14727_consen 196 WTLECYKYQD 205 (418)
T ss_pred eeEEEecHHH
Confidence 9999887643
No 475
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.32 E-value=12 Score=33.03 Aligned_cols=194 Identities=8% Similarity=-0.024 Sum_probs=111.7
Q ss_pred CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEe--
Q 010296 264 PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFR-- 341 (513)
Q Consensus 264 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-- 341 (513)
.-..++-.|+|..-+++...+.|--.|..+++....-.+.......|..-|++....+....-|.-++.++.....+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc
Confidence 446678889998889998889998899999987776666666677788888876665555446766776665544333
Q ss_pred --cCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCC
Q 010296 342 --APASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSS 419 (513)
Q Consensus 342 --~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 419 (513)
..........|.+.|.+...+..|.---.|..+ ..+.++...
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaP----------------------------------- 186 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAP----------------------------------- 186 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccC-----------------------------------
Confidence 334566777888888754222222111111111 111111111
Q ss_pred CCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccc
Q 010296 420 SAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWG 496 (513)
Q Consensus 420 ~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~ 496 (513)
....-+.|+..|+|.+-++.-.++.|-..|..++......... .....-..+--+|.|+.-++. ...+.+..+|
T Consensus 187 -qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~-~~~~gsRriwsdpig~~witt-wg~g~l~rfd 260 (353)
T COG4257 187 -QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN-ALKAGSRRIWSDPIGRAWITT-WGTGSLHRFD 260 (353)
T ss_pred -CCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCC-cccccccccccCccCcEEEec-cCCceeeEeC
Confidence 1111567888899988887777777777776655211111111 011223344445666665554 4444444443
No 476
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.20 E-value=15 Score=38.82 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=93.1
Q ss_pred EEEEeCCCCceeEEeecccC----CeEEEEeeCCC--eEEEEe------------CCCcEEEEecCCCeeeEEecCCCCe
Q 010296 286 VKIWNAEDRAYISTLFGHQS----EVLTIDCLRKE--RVLTVG------------RDRSMQLWKVPEESRLVFRAPASSL 347 (513)
Q Consensus 286 i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~--~~~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~v 347 (513)
|++.|..+++.+..+....+ .+..+.|+... .+++++ .+|.++.|++-.........|...+
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 67777776665544432222 34455555432 233322 2345677766433222112222221
Q ss_pred --eEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceE
Q 010296 348 --ECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWV 425 (513)
Q Consensus 348 --~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 425 (513)
.-.+..|....+.++....+++|++...++++...... ....|
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-----------------------------------~p~~I 979 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-----------------------------------IPNRI 979 (1205)
T ss_pred CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-----------------------------------CceEE
Confidence 22344455446666677889999999988877665433 11227
Q ss_pred EEEEEecCCCEEEEecCCCcEEEEEeCCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcc
Q 010296 426 SSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRL 492 (513)
Q Consensus 426 ~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v 492 (513)
+.+++. +..+++|...-.|.++-.+.....+..+..-+....|+++.+-..+. +|.+ ..=|.+
T Consensus 980 s~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~t-vaga-DrfGNi 1042 (1205)
T KOG1898|consen 980 SSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDT-VAGA-DRFGNI 1042 (1205)
T ss_pred EEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCc-eeec-cccCcE
Confidence 777764 45788887666777777766655666666655666777776664443 4433 333444
No 477
>PLN02153 epithiospecifier protein
Probab=90.07 E-value=17 Score=34.21 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=34.5
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCcceee--eccC---cCCC-eEEEEEecCCCeEEEEeCC-----------CcEEE
Q 010296 231 DGRYLASGGLD-----RHIHLWDTRIQEHIQ--AFPG---HRGP-VSCLTFRQGTSELFSGSFD-----------RTVKI 288 (513)
Q Consensus 231 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~---~~~~-v~~~~~~~~~~~l~~~~~d-----------g~i~i 288 (513)
++++++.|+.+ ..+.+||+.+.+-.. .+.. .... -.+++ .-+++.++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 46667777653 357888987654332 2210 1111 12222 2345556666643 24778
Q ss_pred EeCCCCcee
Q 010296 289 WNAEDRAYI 297 (513)
Q Consensus 289 wd~~~~~~~ 297 (513)
||+.+.+-.
T Consensus 164 yd~~~~~W~ 172 (341)
T PLN02153 164 YNIADGKWV 172 (341)
T ss_pred EECCCCeEe
Confidence 898876543
No 478
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=23 Score=37.46 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=47.1
Q ss_pred EECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 010296 166 ALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIH 245 (513)
Q Consensus 166 ~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 245 (513)
++..-++.|+.|+.+|.+.+|.+.........- ... ... .....-+..+|..|...+.-.++++-+ |+.|.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~----~~~--~~~--~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~ 91 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVE----LVT--ETV--KFEKEFSKKPINKLLVCASLELLLILS-DSQIA 91 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchh----hhc--chh--HHhhhhccchhHHHhhcchhcchheec-CCcce
Confidence 334467899999999999999987654322110 000 000 000111256677777776655555554 67788
Q ss_pred EEeCCCcce
Q 010296 246 LWDTRIQEH 254 (513)
Q Consensus 246 vwd~~~~~~ 254 (513)
++++.+-+.
T Consensus 92 ~~~l~~~~~ 100 (877)
T KOG2063|consen 92 VHKLPELEP 100 (877)
T ss_pred eeecCcccc
Confidence 888776554
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.59 E-value=1.6 Score=40.99 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=95.7
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCccee-eeccCc-CC----CeE-EEEEecCCCeEEEEeCCCcEEEE-e
Q 010296 219 QSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHI-QAFPGH-RG----PVS-CLTFRQGTSELFSGSFDRTVKIW-N 290 (513)
Q Consensus 219 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~----~v~-~~~~~~~~~~l~~~~~dg~i~iw-d 290 (513)
....|..+-..|+|+.|..-+. ..+.|+++.+.... +.+-.. .+ .|+ .+..-..|.-|++++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456777888999998887664 67888887654321 111100 11 122 12223355668888999999888 4
Q ss_pred CCCC-c----eeEEeecccCCeEEEEeeCCC-eEEEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCC
Q 010296 291 AEDR-A----YISTLFGHQSEVLTIDCLRKE-RVLTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDD 364 (513)
Q Consensus 291 ~~~~-~----~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d 364 (513)
.+.+ . .++.++-....+..+.--.+. -|++-...|++.++.....+.+.+......+..+.++|.+..+..-..
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~ 377 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQ 377 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeecC
Confidence 4332 1 122222222233322221122 356777888888887766666555555556777899999876667778
Q ss_pred CCEEEEecCCCCee
Q 010296 365 GSIELWSLLRKKPV 378 (513)
Q Consensus 365 g~i~iwd~~~~~~~ 378 (513)
|.|+++.+.+..+-
T Consensus 378 gki~~~~l~Nr~Pe 391 (733)
T COG4590 378 GKIRLAQLENRNPE 391 (733)
T ss_pred CceEEEEecCCCCC
Confidence 88999988876543
No 480
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.45 E-value=0.54 Score=47.91 Aligned_cols=116 Identities=14% Similarity=0.241 Sum_probs=68.3
Q ss_pred eEEEEECCCCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEE-----------EEcC
Q 010296 162 VTAVALSEDDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILAL-----------AVSS 230 (513)
Q Consensus 162 V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~s~ 230 (513)
|.-+-|-++..++..+-.++.|++..+...... .+. +|...++.+ .+||
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--------l~r------------sHs~~~~d~a~~~~g~~~l~~lSp 245 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--------LFR------------SHSQRVTDMAFFAEGVLKLASLSP 245 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHHH--------HHH------------hcCCCcccHHHHhhchhhheeeCC
Confidence 333334446677778888899988777654431 112 232222222 3799
Q ss_pred CCCEEEEEeCCCcEEEEeCC-Cc----ceeeeccCcC-CCeEEEEEecCC---------CeEEEE-eCCCcEEEEeCCCC
Q 010296 231 DGRYLASGGLDRHIHLWDTR-IQ----EHIQAFPGHR-GPVSCLTFRQGT---------SELFSG-SFDRTVKIWNAEDR 294 (513)
Q Consensus 231 ~~~~l~s~~~dg~i~vwd~~-~~----~~~~~~~~~~-~~v~~~~~~~~~---------~~l~~~-~~dg~i~iwd~~~~ 294 (513)
||+.|+.++.||.++.|.+. +| .++...+.|. .+-.|..|+.+. .+++++ ..+..+++|....-
T Consensus 246 DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 246 DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 99999999999999999764 22 3445556666 333333343321 223333 34567888887666
Q ss_pred cee
Q 010296 295 AYI 297 (513)
Q Consensus 295 ~~~ 297 (513)
+|+
T Consensus 326 ~Cl 328 (1283)
T KOG1916|consen 326 QCL 328 (1283)
T ss_pred hhh
Confidence 655
No 481
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.39 E-value=32 Score=36.43 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=49.1
Q ss_pred cceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcceee---------e-------eecCcccEEEEEEeecCCCEEEEE
Q 010296 422 YSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKDIQP---------L-------YNLPLVGFVNSLAFAKSGQFLIAG 485 (513)
Q Consensus 422 ~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~~~~---------~-------~~~~~~~~v~~v~~sp~~~~l~~~ 485 (513)
...|.+++...-+.+++..-.||+|.++|-.+....... + ..++...++..++|||++-.++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 345888888888889999999999999998765211111 1 111222345568999999888877
Q ss_pred ecCCCccc
Q 010296 486 VGQEPRLG 493 (513)
Q Consensus 486 ~~~dg~v~ 493 (513)
..+|.+.
T Consensus 339 -~~~~~~~ 345 (753)
T PF11635_consen 339 -DEDGKTK 345 (753)
T ss_pred -ecCCCce
Confidence 7777744
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.87 E-value=31 Score=35.54 Aligned_cols=202 Identities=14% Similarity=0.191 Sum_probs=102.0
Q ss_pred hhhccCCCeEEEEECCCCCeEEEEeCCceEEEEeCCCC----------------ccccccCCChh-hhccCC----CCCC
Q 010296 154 VLLKHRQSVTAVALSEDDSKGFSASKDGSILHWDVSSG----------------KGVKYLWPSEE-VLKSHG----AKDP 212 (513)
Q Consensus 154 ~~~~h~~~V~~~~~s~~~~~l~t~~~dg~v~iwd~~~~----------------~~~~~~~~~~~-~~~~~~----~~~~ 212 (513)
.+-.-...|.+.+||.|.+.++....+..|.+++-.-. +.+..=|...+ .++..+ ...|
T Consensus 107 ivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdp 186 (1243)
T COG5290 107 IVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDP 186 (1243)
T ss_pred hhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCC
Confidence 33345788999999999998887777788888763211 11111111110 111111 0111
Q ss_pred CCCCCCCcccE-------EEEEEcCCCCEEEEEeCC----CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe
Q 010296 213 QGRATKQSKHI-------LALAVSSDGRYLASGGLD----RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS 281 (513)
Q Consensus 213 ~~~~~~~~~~v-------~~~~~s~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 281 (513)
.....-..+.+ .-+.|--|..+.+++... ..++||.- .|+.-..-...++.-..+.|-|+|..+++-.
T Consensus 187 tmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~ 265 (1243)
T COG5290 187 TMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIG 265 (1243)
T ss_pred CCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeec
Confidence 11111111112 234454455555554321 23455542 2222111112233344589999999999877
Q ss_pred CCC-----cEEEEeCCC---CceeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeee-EEecCCCCeeEEEe
Q 010296 282 FDR-----TVKIWNAED---RAYISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRL-VFRAPASSLECCCF 352 (513)
Q Consensus 282 ~dg-----~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~ 352 (513)
.|| .|.++..+. |..-.. .+....+..++|+-...+++....+.|++|...+-.-. ........+.-+.|
T Consensus 266 td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkw 344 (1243)
T COG5290 266 TDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKW 344 (1243)
T ss_pred cCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeee
Confidence 554 344444322 221111 12333456667766666667777888999987654332 22233345666788
Q ss_pred ecCCe
Q 010296 353 ISNDE 357 (513)
Q Consensus 353 ~~~~~ 357 (513)
+|...
T Consensus 345 hpe~~ 349 (1243)
T COG5290 345 HPEEK 349 (1243)
T ss_pred ccccC
Confidence 88753
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.65 E-value=3.7 Score=41.64 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCCeEEEEeCCceEEEEeCCCCc----ccccc-CCChhhhccCCCCCCCC--CCCCCcccEEEEEEcC----CCCEEEE
Q 010296 169 EDDSKGFSASKDGSILHWDVSSGK----GVKYL-WPSEEVLKSHGAKDPQG--RATKQSKHILALAVSS----DGRYLAS 237 (513)
Q Consensus 169 ~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~----~~~~l~s 237 (513)
++...|+.+..||.+......... ..... ..............+.. ........+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466788888899998888776421 11111 11111111111100000 1112234456666666 6789999
Q ss_pred EeCCCcEEEEeCCCcceeeec
Q 010296 238 GGLDRHIHLWDTRIQEHIQAF 258 (513)
Q Consensus 238 ~~~dg~i~vwd~~~~~~~~~~ 258 (513)
.+.|+++++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.40 E-value=1.1 Score=26.13 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=21.2
Q ss_pred ccEEEEEEeecCCCEEEEEecCC--Cccccc
Q 010296 467 VGFVNSLAFAKSGQFLIAGVGQE--PRLGRW 495 (513)
Q Consensus 467 ~~~v~~v~~sp~~~~l~~~~~~d--g~v~~W 495 (513)
.+.-....|||||++|+-++..+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44567789999999999886776 666555
No 485
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=87.74 E-value=0.51 Score=47.00 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.6
Q ss_pred CCCCCC
Q 010296 23 QDPFFA 28 (513)
Q Consensus 23 ~~~~~~ 28 (513)
.|.|+.
T Consensus 867 gW~fL~ 872 (960)
T KOG1189|consen 867 GWSFLN 872 (960)
T ss_pred Ceeeec
Confidence 344443
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.61 E-value=2.8 Score=42.54 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC----cceee-----------eccC-----------cCCCeEEEEEec----CCCeEEE
Q 010296 230 SDGRYLASGGLDRHIHLWDTRI----QEHIQ-----------AFPG-----------HRGPVSCLTFRQ----GTSELFS 279 (513)
Q Consensus 230 ~~~~~l~s~~~dg~i~vwd~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~----~~~~l~~ 279 (513)
++...|+.+..||.+....... +.... .+.+ ....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888899888887654 11111 0111 123455666666 6788999
Q ss_pred EeCCCcEEEEeCCCCceeEEe
Q 010296 280 GSFDRTVKIWNAEDRAYISTL 300 (513)
Q Consensus 280 ~~~dg~i~iwd~~~~~~~~~~ 300 (513)
.+.|++|++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 487
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.17 E-value=2 Score=24.99 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=20.3
Q ss_pred ccCCCeEEEEECCCCCeEEE-EeCC--ceEEEE
Q 010296 157 KHRQSVTAVALSEDDSKGFS-ASKD--GSILHW 186 (513)
Q Consensus 157 ~h~~~V~~~~~s~~~~~l~t-~~~d--g~v~iw 186 (513)
...+.-.+..|||||++|+- +..+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567788999999998884 4455 666665
No 488
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=17 Score=30.69 Aligned_cols=109 Identities=7% Similarity=-0.099 Sum_probs=58.8
Q ss_pred CCCeEEEEeC--CCcEEEEeCCCCceeEEeecccCCeEE--EEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCee
Q 010296 273 GTSELFSGSF--DRTVKIWNAEDRAYISTLFGHQSEVLT--IDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLE 348 (513)
Q Consensus 273 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 348 (513)
++.++.+.+. ...|++||+.+++.+....-....+.. +.-..+......=.++.-..+|..+-+.+-...-.+.-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 4455556554 347999999999877654322222211 111112222244457777888887766553333334444
Q ss_pred EEEeecCCeEEEEeCCCCEEEEecCCCCeeEEee
Q 010296 349 CCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVK 382 (513)
Q Consensus 349 ~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 382 (513)
.++.... .++.+....+++.-|..+...+.++.
T Consensus 135 gLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~ 167 (262)
T COG3823 135 GLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQ 167 (262)
T ss_pred eeecCCc-ceEeeCCceEEEecCHHHhhhcceEE
Confidence 4443222 36666666677777776655444443
No 489
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.71 E-value=18 Score=32.75 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=59.2
Q ss_pred CcEEEEeCCCcceeeeccCcCCCeEEEEEecCCCeEEEEe------CCCcEEEEeCCCCceeEEee----cccCCeEEEE
Q 010296 242 RHIHLWDTRIQEHIQAFPGHRGPVSCLTFRQGTSELFSGS------FDRTVKIWNAEDRAYISTLF----GHQSEVLTID 311 (513)
Q Consensus 242 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~ 311 (513)
..|++||..+.+....-.+-.+.|++|.|..+.+.++.|. ....+..||+.+......-. .-.++|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4699999888777666666778899999986666666653 35578889987765422221 1246788887
Q ss_pred eeC-C-CeEE-EEe-C--CCcEEEEecCC
Q 010296 312 CLR-K-ERVL-TVG-R--DRSMQLWKVPE 334 (513)
Q Consensus 312 ~~~-~-~~~~-~~~-~--d~~i~iwd~~~ 334 (513)
+.. + ..++ ++. . ...|..||-..
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCc
Confidence 754 2 2444 332 2 33466665443
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.10 E-value=31 Score=32.63 Aligned_cols=188 Identities=14% Similarity=0.155 Sum_probs=105.6
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCceeEEeecccCCeEEEEeeC----CCe---EEEEe-CC---CcEEEEecCC--Ceee
Q 010296 272 QGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQSEVLTIDCLR----KER---VLTVG-RD---RSMQLWKVPE--ESRL 338 (513)
Q Consensus 272 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~---~~~~~-~d---~~i~iwd~~~--~~~~ 338 (513)
|...+++.....+-+.+||+.. +.+..+. .+.++.+.... ++. +++++ .+ .+|++|.+.. +...
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 4456788888889999999965 4555553 23444443321 332 34443 22 5699998753 3222
Q ss_pred EEec-------CCCCeeEEEee--c-CCe--EEEEeCCCCEEEEecC---CCC----eeEEeecCCCcccCCCCcccCcC
Q 010296 339 VFRA-------PASSLECCCFI--S-NDE--FLSGSDDGSIELWSLL---RKK----PVYIVKNAHPLLDGLKNFEQDEG 399 (513)
Q Consensus 339 ~~~~-------~~~~v~~~~~~--~-~~~--~~~~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~ 399 (513)
.... ....+..+|+. + +|. .++...+|.+..|.+. .+. .++.+....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-------------- 208 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-------------- 208 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--------------
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--------------
Confidence 2211 11235566654 3 343 4577888988888774 232 344444322
Q ss_pred ccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEeCCCCcc-eeeeee---cCcccEEEEEEe
Q 010296 400 KISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAIESETKD-IQPLYN---LPLVGFVNSLAF 475 (513)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~~~~~~~-~~~~~~---~~~~~~v~~v~~ 475 (513)
.+-.|.......+|+.|-++--|+-|+....... ...+.. ......|-.|++
T Consensus 209 ------------------------Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlal 264 (381)
T PF02333_consen 209 ------------------------QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLAL 264 (381)
T ss_dssp -------------------------EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEE
T ss_pred ------------------------cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEE
Confidence 2888888888889999998877777776533211 122211 113456777777
Q ss_pred ec--CC-CEEEEEecCCCcccccccCCC
Q 010296 476 AK--SG-QFLIAGVGQEPRLGRWGHLPA 500 (513)
Q Consensus 476 sp--~~-~~l~~~~~~dg~v~~W~~~~~ 500 (513)
-. ++ .||++++-.+++..+|+....
T Consensus 265 y~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 265 YYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 53 44 477777677789999987654
No 491
>PLN02153 epithiospecifier protein
Probab=86.07 E-value=30 Score=32.48 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=33.2
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCcceeeeccC---cC-CCe-EEEEEecCCCeEEEEeCC-----CcEEEEeCCC
Q 010296 231 DGRYLASGGLD-------RHIHLWDTRIQEHIQAFPG---HR-GPV-SCLTFRQGTSELFSGSFD-----RTVKIWNAED 293 (513)
Q Consensus 231 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~---~~-~~v-~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 293 (513)
++.+++.|+.+ ..+.+||+.+.+-...-.. .. ... .+++. -++++++.|+.+ ..+.+||+.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA-VGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE-ECCEEEEECCCCCCCccCcEEEEECCC
Confidence 35666666653 3578888877643321110 00 000 11122 245556666643 3578899887
Q ss_pred Cce
Q 010296 294 RAY 296 (513)
Q Consensus 294 ~~~ 296 (513)
.+.
T Consensus 111 ~~W 113 (341)
T PLN02153 111 NEW 113 (341)
T ss_pred CEE
Confidence 654
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.03 E-value=3.6 Score=24.24 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCcceeeeccCcCCCeEEEEEe
Q 010296 230 SDGRYLASGGL-DRHIHLWDTRIQEHIQAFPGHRGPVSCLTFR 271 (513)
Q Consensus 230 ~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 271 (513)
|++++|+++.. ++.|.++|..+++.+..+.. ......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.81 E-value=25 Score=31.83 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCcceee
Q 010296 183 ILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGG------LDRHIHLWDTRIQEHIQ 256 (513)
Q Consensus 183 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~ 256 (513)
|++||+.+.+-...- .+-.+.|++|.|..+.++++.|. ....+..||+.+.....
T Consensus 18 lC~yd~~~~qW~~~g-------------------~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPG-------------------NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred EEEEECCCCEeecCC-------------------CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee
Q ss_pred eccCc----CCCeEEEEEecCCCeEEE-----EeCCCcEEEEeCCCCceeEE-eecccCCeEEEEeeC
Q 010296 257 AFPGH----RGPVSCLTFRQGTSELFS-----GSFDRTVKIWNAEDRAYIST-LFGHQSEVLTIDCLR 314 (513)
Q Consensus 257 ~~~~~----~~~v~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~ 314 (513)
.-.+- .++|..+.+......=+. ...+..|..||=.+-..+.. .......|..+.+.+
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.78 E-value=4.6 Score=23.77 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred cCCCeEEEEeC-CCcEEEEeCCCCceeEEeecccCCeEEEEee
Q 010296 272 QGTSELFSGSF-DRTVKIWNAEDRAYISTLFGHQSEVLTIDCL 313 (513)
Q Consensus 272 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 313 (513)
|++++|+++.. ++.|.++|..+++.+..+.. ......+.++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
No 495
>PLN02193 nitrile-specifier protein
Probab=85.43 E-value=41 Score=33.37 Aligned_cols=225 Identities=7% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCcceeee----ccCcCCCeEEEEEecCCCeEEEEeCC-----CcEEEEeCCCC
Q 010296 231 DGRYLASGGLD-------RHIHLWDTRIQEHIQA----FPGHRGPVSCLTFRQGTSELFSGSFD-----RTVKIWNAEDR 294 (513)
Q Consensus 231 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 294 (513)
++.+++.|+.+ ..+.+||+.+.+-... -.............-++.+.+.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Q ss_pred ceeEEeec----ccCCeEEEEeeCCCeEEEEeCCCc-----EEEEecCCCeeeEEec-----CCCCeeEEEeecCCeEEE
Q 010296 295 AYISTLFG----HQSEVLTIDCLRKERVLTVGRDRS-----MQLWKVPEESRLVFRA-----PASSLECCCFISNDEFLS 360 (513)
Q Consensus 295 ~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~d~~-----i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~ 360 (513)
+....... ....-.++....+..++.++.++. +..||+.+..-..... ....-..++...+..++.
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Q ss_pred EeCC----CCEEEEecCCCCeeEEeec---CCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecC
Q 010296 361 GSDD----GSIELWSLLRKKPVYIVKN---AHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGG 433 (513)
Q Consensus 361 ~~~d----g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 433 (513)
++.+ ..+.+||+.+.+-...-.. ..+. ....+..-+
T Consensus 335 GG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-------------------------------------~~~~~~~~~ 377 (470)
T PLN02193 335 YGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-------------------------------------SVFASAAVG 377 (470)
T ss_pred ECCCCCccCceEEEECCCCEEEEeccCCCCCCCc-------------------------------------ceeEEEEEC
Q ss_pred CCEEEEecCCC--------------cEEEEEeCCCCcceeeeeecC---------cccEEEEEEeecCCCEEEEEecCCC
Q 010296 434 SDLAASGAGNG--------------SVRLWAIESETKDIQPLYNLP---------LVGFVNSLAFAKSGQFLIAGVGQEP 490 (513)
Q Consensus 434 ~~~l~~g~~dg--------------~v~vwd~~~~~~~~~~~~~~~---------~~~~v~~v~~sp~~~~l~~~~~~dg 490 (513)
+++++.|+... .+.+||+.+. .+..+.... ............+..+++.|+..+.
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~--~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL--QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcCcC--EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Q ss_pred cccc
Q 010296 491 RLGR 494 (513)
Q Consensus 491 ~v~~ 494 (513)
.-++
T Consensus 456 ~~~~ 459 (470)
T PLN02193 456 NDRF 459 (470)
T ss_pred cccc
No 496
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=85.18 E-value=0.27 Score=39.32 Aligned_cols=41 Identities=29% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCcccccccccCCHHHHHh
Q 010296 39 YDDDDIESADSEDYDDEVEKSGPEESEGEEEEEETADEKRK 79 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ee~~~~~~~ 79 (513)
..++...+++++++++++++++++++++++++++....+.+
T Consensus 109 ~~~d~~~~e~d~ee~~dee~deeddeeee~~ee~~p~K~~~ 149 (149)
T PF03066_consen 109 MEEDEESEEEDDEEDEDEEDDEEDDEEEEEEEEESPVKKSK 149 (149)
T ss_dssp -----------------------------------------
T ss_pred ccccccccccchhhhcccccccccccccccccccCCCccCC
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=84.99 E-value=5.1 Score=40.99 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCeEEEEeCCceEEEEeCCCCccccccCCChhhhccCCCCCCCCCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010296 170 DDSKGFSASKDGSILHWDVSSGKGVKYLWPSEEVLKSHGAKDPQGRATKQSKHILALAVSSDGRYLASGGLDRHIHLWDT 249 (513)
Q Consensus 170 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~ 249 (513)
+-..+..|+.++.+.|+.-..+...... ..........+.++.+++.. +..|.-||++-.|--
T Consensus 546 ~~PTic~gtq~ssisissss~~s~ke~~---------------~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~r 608 (925)
T KOG3522|consen 546 PHPTICLGTQTSSISISSSSLDSIKEVT---------------SEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGR 608 (925)
T ss_pred CCCcccccCccceeEEeeccCCccccee---------------ccCCCCchhhhhhhhccccc--cccCccCCccccccC
Q ss_pred C-----CcceeeeccCcCCCeEEEEEecCCCeEEEEeCCCcEEEEeCCCCceeEEeecccC---CeEEEEeeCCCeEEEE
Q 010296 250 R-----IQEHIQAFPGHRGPVSCLTFRQGTSELFSGSFDRTVKIWNAEDRAYISTLFGHQS---EVLTIDCLRKERVLTV 321 (513)
Q Consensus 250 ~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~ 321 (513)
. .+.+...+.....+|.+.+|..+ ++.++.+|.|.++...+......+..|.. .|+++.+...+.+++-
T Consensus 609 ap~gSwd~ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvaf 685 (925)
T KOG3522|consen 609 APSGSWDGEPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAF 685 (925)
T ss_pred CCCCCCCCCCccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEE
Q ss_pred eCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeC
Q 010296 322 GRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSD 363 (513)
Q Consensus 322 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 363 (513)
.....++++ .+............-.....+|.+++++.+.
T Consensus 686 asG~~~rlf--htetl~hlqd~niaT~vt~~lP~~kllsv~~ 725 (925)
T KOG3522|consen 686 ASGDEERLF--HTETLWHLQDSNIATSVTVDLPFGKLLSVPG 725 (925)
T ss_pred cCCCEEEEe--cccccCCccccccCcceeecCCCcccccCCC
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.91 E-value=41 Score=32.90 Aligned_cols=172 Identities=8% Similarity=-0.013 Sum_probs=0.0
Q ss_pred eEEeecccCCeEEEEeeCCCeEEEEeC-CCcEEEEecCCCeeeEEe--------cCCCCeeEEEeecCC-------eEEE
Q 010296 297 ISTLFGHQSEVLTIDCLRKERVLTVGR-DRSMQLWKVPEESRLVFR--------APASSLECCCFISND-------EFLS 360 (513)
Q Consensus 297 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~-------~~~~ 360 (513)
+..+...-...+.|+|.|+++++++-. .|.|++++..+....... .....+..++++|+- .|.+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Q ss_pred Ee----------CCCCEEEEecC----CCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEE
Q 010296 361 GS----------DDGSIELWSLL----RKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVS 426 (513)
Q Consensus 361 ~~----------~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 426 (513)
.. ....|.-|.+. .......+-...+ ......-.
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP--------------------------------~~~~H~Gg 149 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP--------------------------------AGNDHNGG 149 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCC--------------------------------CCCCcCCc
Q ss_pred EEEEecCCCEEEEecCCCc----------E--------------------EEEEeCCCCcc----------eeeeeecCc
Q 010296 427 SVTVCGGSDLAASGAGNGS----------V--------------------RLWAIESETKD----------IQPLYNLPL 466 (513)
Q Consensus 427 ~~~~s~~~~~l~~g~~dg~----------v--------------------~vwd~~~~~~~----------~~~~~~~~~ 466 (513)
.|+|.|+|.++++.+..+. . +|+.++..... ...+..+.|
T Consensus 150 rI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~ 229 (454)
T TIGR03606 150 RLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH 229 (454)
T ss_pred eEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec
Q ss_pred ccEEEEEEeecCCCEEEEEecCCCcccccccCCCc
Q 010296 467 VGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAA 501 (513)
Q Consensus 467 ~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~ 501 (513)
..+. .++|.|+|++.++=.|.++-=.|.-+.++.
T Consensus 230 RNp~-Gla~dp~G~Lw~~e~Gp~~~DEiN~I~~G~ 263 (454)
T TIGR03606 230 RNPQ-GLAFTPDGTLYASEQGPNSDDELNIIVKGG 263 (454)
T ss_pred cccc-eeEECCCCCEEEEecCCCCCcEEEEeccCC
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=37 Score=37.08 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcceeeeccCcCC-CeEEEEEecCCCeEEEEeCCCcEEEEeCCCCc
Q 010296 217 TKQSKHILALAVSSDGRYLASGGLDRHIHLWDTRIQEHIQAFPGHRG-PVSCLTFRQGTSELFSGSFDRTVKIWNAEDRA 295 (513)
Q Consensus 217 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 295 (513)
.+.......++|+|...++|.++..|.|++|-...-+.+........ .+..+.+-...........+..+.+|......
T Consensus 32 ~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 111 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT 111 (993)
T ss_pred cCCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc
Q ss_pred eeEEeecccCCeEEEEeeCCCeEEEEeCCCcEEEEecCCCeeeEEecCCCCeeE----EEeecCCeEEEEeCCCCEEEEe
Q 010296 296 YISTLFGHQSEVLTIDCLRKERVLTVGRDRSMQLWKVPEESRLVFRAPASSLEC----CCFISNDEFLSGSDDGSIELWS 371 (513)
Q Consensus 296 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~dg~i~iwd 371 (513)
.+. ....+.+....+.-.++.+ ..+.+++|+..-.....+......... ...++.-.+..--.+-.-.+|.
T Consensus 112 ~~~----~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 186 (993)
T KOG1983|consen 112 GVF----LKQEITSFVTDPPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS 186 (993)
T ss_pred eee----cCCcceeccCCCCcchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee
Q ss_pred cCCCCeeEEeecCCCcccCCCCcccCcCccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEecCCCcEEEEEe
Q 010296 372 LLRKKPVYIVKNAHPLLDGLKNFEQDEGKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGAGNGSVRLWAI 451 (513)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~v~vwd~ 451 (513)
+.-.. ......... +.+..+......+..+..- .+-+|+.
T Consensus 187 ~~~~~-~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~ 226 (993)
T KOG1983|consen 187 LPDAY-LGLSLIEYE--------------------------------------SLQVLYYSPTKILIGFNRG-LVVIKDR 226 (993)
T ss_pred ccccc-ccccccccc--------------------------------------cceeeeecCCCcceeeeee-eeeehhc
Q ss_pred CCCCcceeeeeecCcccEEEEEEeecCCCEEEEEecCCCcccccccCCCcccceEEEeccc
Q 010296 452 ESETKDIQPLYNLPLVGFVNSLAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIKL 512 (513)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~~ 512 (513)
... .....+....+.. ++++..++++ ..||.+..|+...+.. ..+-.+.++
T Consensus 227 ~~~-~~~~~~~~~~~~~-------~~~~~~~v~~-h~Dgs~~fWd~s~g~~-~~~~~~~~~ 277 (993)
T KOG1983|consen 227 ASK-YVQSAYLPNGQLE-------SRDGSHFVSY-HTDGSYAFWDVSSGKL-QIARNPVPL 277 (993)
T ss_pred ccc-cchhhcccccccC-------ccCCceEEEE-EecCCEEeeecCCCce-eecCccccc
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.10 E-value=20 Score=31.56 Aligned_cols=153 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEEeCCCcEEEEecCCCeeeEEecCCCCeeEEEeecCCeEEEEeCCCCEEEEecCCCCeeEEeecCCCcccCCCCcccCc
Q 010296 319 LTVGRDRSMQLWKVPEESRLVFRAPASSLECCCFISNDEFLSGSDDGSIELWSLLRKKPVYIVKNAHPLLDGLKNFEQDE 398 (513)
Q Consensus 319 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (513)
......++|.++|-..-....+...... +...+....+....--.-.+||+.+.+....-
T Consensus 3 ~~~~~~~~v~~~d~t~~g~s~~~~~~~~---c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~----------------- 62 (243)
T PF07250_consen 3 MALLHNNKVIMFDRTNFGPSNISLPDGR---CRDNPEDNALKFDGPAHSVEYDPNTNTFRPLT----------------- 62 (243)
T ss_pred EeEccCCEEEEEeCCCcccccccCCCCc---cccCccccccccCceEEEEEEecCCCcEEecc-----------------
Q ss_pred CccccccCCCCCCCCCCcCCCCCcceEEEEEEecCCCEEEEec---CCCcEEEEEeCC---CCcceeeeeecCcccEEEE
Q 010296 399 GKISNGHSENGNLNPGSYHSSSAYSWVSSVTVCGGSDLAASGA---GNGSVRLWAIES---ETKDIQPLYNLPLVGFVNS 472 (513)
Q Consensus 399 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~v~vwd~~~---~~~~~~~~~~~~~~~~v~~ 472 (513)
.....++.+-++-++|++|.+|+ ....|++++... ................-.+
T Consensus 63 --------------------v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 63 --------------------VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred --------------------CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc
Q ss_pred EEeecCCCEEEEEecCCCcccccccCCCcccceEEEecc
Q 010296 473 LAFAKSGQFLIAGVGQEPRLGRWGHLPAARNGVLVHPIK 511 (513)
Q Consensus 473 v~~sp~~~~l~~~~~~dg~v~~W~~~~~~~~~~~~~~l~ 511 (513)
+..-|||+.|++|+....+..+|...........+.-|.
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~ 161 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLS 161 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecch
Done!