Query 010297
Match_columns 513
No_of_seqs 200 out of 1247
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1j_A POLIII, DNA polymerase 100.0 1.2E-33 4E-38 264.4 20.6 170 4-183 8-178 (186)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 8.3E-33 2.8E-37 259.9 18.8 178 3-181 5-195 (204)
3 3mxm_B Three prime repair exon 100.0 6.5E-33 2.2E-37 271.2 15.2 175 5-183 9-217 (242)
4 2gui_A DNA polymerase III epsi 100.0 1.1E-31 3.7E-36 251.3 21.7 169 5-180 6-184 (194)
5 1y97_A Three prime repair exon 100.0 3.8E-32 1.3E-36 261.8 19.2 179 1-183 3-212 (238)
6 2f96_A Ribonuclease T; RNAse, 100.0 3.9E-31 1.3E-35 253.7 20.1 174 6-186 27-218 (224)
7 3u3y_B Three prime repair exon 100.0 2.1E-31 7.2E-36 271.2 16.2 172 7-183 11-217 (314)
8 1zbh_A 3'-5' exonuclease ERI1; 100.0 1.4E-30 4.9E-35 261.6 21.1 174 7-181 77-263 (299)
9 2xri_A ERI1 exoribonuclease 3; 100.0 1.1E-30 3.6E-35 251.6 18.3 172 8-180 31-213 (224)
10 3v9w_A Ribonuclease T; DEDD nu 100.0 1.1E-29 3.9E-34 244.8 21.0 172 6-184 35-224 (235)
11 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 1.2E-29 4.1E-34 261.3 18.7 174 7-181 127-313 (349)
12 3cg7_A CRN-4, cell death-relat 100.0 1E-29 3.5E-34 257.1 16.5 173 6-180 17-208 (308)
13 3tr8_A Oligoribonuclease; tran 100.0 4.7E-30 1.6E-34 243.3 12.8 165 2-183 3-183 (186)
14 2igi_A Oligoribonuclease; RNAs 100.0 1.7E-29 6E-34 233.7 13.7 161 5-182 2-178 (180)
15 2gbz_A Oligoribonuclease; ORN, 100.0 1.5E-28 5.3E-33 231.7 13.2 160 6-183 7-183 (194)
16 1wlj_A Interferon stimulated g 100.0 7.9E-29 2.7E-33 232.5 10.5 160 7-183 4-171 (189)
17 2qxf_A Exodeoxyribonuclease I; 100.0 1.1E-27 3.7E-32 256.1 18.6 173 2-180 3-200 (482)
18 2kfn_A Klenow fragment of DNA 99.0 3.5E-09 1.2E-13 115.9 17.5 144 8-183 26-195 (605)
19 4hec_A Putative uncharacterize 98.8 2.1E-08 7.1E-13 95.7 11.8 148 8-179 22-180 (190)
20 1x9m_A DNA polymerase; DNA plo 98.6 6.9E-08 2.4E-12 107.4 9.1 140 10-184 1-186 (698)
21 4gmj_B CCR4-NOT transcription 98.5 8.3E-06 2.8E-10 82.2 19.0 170 8-183 34-247 (285)
22 1qht_A Protein (DNA polymerase 98.4 2.4E-06 8.3E-11 96.1 16.1 146 7-178 134-327 (775)
23 1noy_A Protein (DNA polymerase 98.3 1.2E-05 4.1E-10 83.4 15.8 166 7-176 105-334 (388)
24 3iay_A DNA polymerase delta ca 98.1 4.3E-05 1.5E-09 87.7 17.7 156 8-177 249-465 (919)
25 1s5j_A DNA polymerase I; repli 98.0 4.2E-05 1.4E-09 87.0 13.7 157 6-174 188-386 (847)
26 2d5r_A CCR4-NOT transcription 97.9 0.00069 2.4E-08 67.1 19.0 169 8-183 24-237 (252)
27 4dfk_A DNA polymerase I, therm 97.8 5.5E-05 1.9E-09 82.1 9.2 122 5-181 7-128 (540)
28 1uoc_A POP2; hydrolase, DEDD n 97.8 0.0013 4.3E-08 66.5 18.3 174 6-183 36-267 (289)
29 2p51_A SPCC18.06C protein; DED 97.7 0.00091 3.1E-08 68.7 17.0 172 6-184 43-259 (333)
30 2gv9_A DNA polymerase; polymer 97.7 0.00071 2.4E-08 79.6 17.8 166 7-177 319-550 (1193)
31 3qex_A DNA polymerase, GP43; d 97.4 0.0011 3.8E-08 76.0 13.9 164 7-176 107-337 (903)
32 3k59_A POL II, DNA polymerase 97.3 0.005 1.7E-07 69.7 17.1 149 6-177 151-349 (786)
33 3saf_A Exosome component 10; e 96.4 0.037 1.3E-06 58.4 13.8 134 7-185 128-281 (428)
34 2a1r_A Poly(A)-specific ribonu 96.0 0.056 1.9E-06 57.0 13.0 85 94-183 281-399 (430)
35 2e6m_A Werner syndrome ATP-dep 95.8 0.054 1.8E-06 50.5 10.8 89 87-183 87-197 (208)
36 3d45_A Poly(A)-specific ribonu 95.8 0.024 8.1E-07 61.1 9.1 84 94-182 276-393 (507)
37 3pv8_A DNA polymerase I; DNA p 95.7 0.049 1.7E-06 59.7 11.5 132 9-184 30-184 (592)
38 2hbj_A Exosome complex exonucl 95.2 0.31 1.1E-05 50.9 14.9 89 86-184 149-257 (410)
39 2py5_A DNA polymerase; protein 93.6 0.31 1.1E-05 53.1 11.0 123 7-178 5-181 (575)
40 1yt3_A Ribonuclease D, RNAse D 92.7 0.83 2.8E-05 46.7 11.9 90 86-184 64-173 (375)
41 1vk0_A Hypothetical protein; h 90.4 0.94 3.2E-05 43.1 8.8 87 86-179 98-205 (206)
42 3cym_A Uncharacterized protein 89.1 1.7 5.8E-05 45.8 10.4 89 85-184 84-190 (440)
43 1bgx_T TAQ DNA polymerase; DNA 43.1 40 0.0014 38.4 7.3 82 86-182 340-421 (832)
44 3ikm_A DNA polymerase subunit 37.0 3.2 0.00011 48.6 -2.8 37 93-134 193-229 (1172)
45 3d45_A Poly(A)-specific ribonu 22.4 1.3E+02 0.0046 31.9 6.7 48 8-55 24-97 (507)
46 2a1r_A Poly(A)-specific ribonu 22.4 1.4E+02 0.0047 31.2 6.6 48 8-55 22-95 (430)
No 1
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.2e-33 Score=264.44 Aligned_cols=170 Identities=26% Similarity=0.345 Sum_probs=150.4
Q ss_pred CCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHH
Q 010297 4 TQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFAD 83 (513)
Q Consensus 4 t~~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~E 83 (513)
...+.+||+||+||||+++ ..++|||||||.++++ +++++|+.+|+|.. +++++++++||||+++|++++++.+
T Consensus 8 ~l~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~g--~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~ 81 (186)
T 2p1j_A 8 TFGDATFVVLDFETTGLDP--QVDEIIEIGAVKIQGG--QIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEE 81 (186)
T ss_dssp -----CEEEEEEEESCSCT--TTCCEEEEEEEEEETT--EEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHH
T ss_pred cCcCCCEEEEEEECCCCCC--CCCeEEEEEEEEEECC--EEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHH
Confidence 3456799999999999987 6789999999999876 56789999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC-CCCCC
Q 010297 84 IADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHR 162 (513)
Q Consensus 84 Vl~ef~efL~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~-~~aHR 162 (513)
|+.+|.+|+++.++||||+ .||++||++.++++|++++.+ .++||+.+++..+ ..++++|.+++++||++ ..+||
T Consensus 82 v~~~~~~~l~~~~lv~hn~-~fD~~~L~~~~~~~g~~~~~~-~~iDt~~l~~~~~--~~~~~~L~~l~~~~gi~~~~~H~ 157 (186)
T 2p1j_A 82 VLPEFLGFLEDSIIVAHNA-NFDYRFLRLWIKKVMGLDWER-PYIDTLALAKSLL--KLRSYSLDSVVEKLGLGPFRHHR 157 (186)
T ss_dssp HHHHHHHHSSSCEEEETTH-HHHHHHHHHHHHHHHCCCCCC-CEEEHHHHHHHHT--CCSCCSHHHHHHHTTCCSTTCCH
T ss_pred HHHHHHHHHCCCEEEEECc-HHHHHHHHHHHHHcCCCCCCC-CEEeHHHHHHHHh--hcCCCCHHHHHHHcCCCCCCCcC
Confidence 9999999999999999999 999999999999999987544 6999999988654 56789999999999998 67999
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 010297 163 SLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 163 ALdDA~aTA~Ll~~ll~~L~~ 183 (513)
|++||++|+++|.++++...+
T Consensus 158 Al~Da~~t~~l~~~l~~~~~~ 178 (186)
T 2p1j_A 158 ALDDARVTAQVFLRFVEMMKK 178 (186)
T ss_dssp HHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998776444
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=8.3e-33 Score=259.92 Aligned_cols=178 Identities=19% Similarity=0.179 Sum_probs=153.0
Q ss_pred CCCCCCcEEEEEEecCCCCCC--CCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCC
Q 010297 3 PTQDRSEIAFFDVETTVPTRP--GQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPT 80 (513)
Q Consensus 3 ~t~~~~~~VVfDlETTGLd~~--g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Aps 80 (513)
|...-..||+||+||||+++. ...++|||||||+++...++++++|+.+|+|....+++++++++||||++||+++++
T Consensus 5 m~~~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~ 84 (204)
T 1w0h_A 5 ADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT 84 (204)
T ss_dssp CCCSSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBC
T ss_pred CCCCcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCC
Confidence 555678899999999999851 146899999999998433467899999999987557999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCe-------EEEeCcchHHHH-HHHHHHHHcCCCCCCC-CcceeHHHHHHHHhcCCCCCCCHHHHH
Q 010297 81 FADIADTVFDILHGRI-------WAGHNILRFDCA-RIREAFAEIGRPAPEP-KGTIDSLALLTQRFGRRAGDMKMASLA 151 (513)
Q Consensus 81 f~EVl~ef~efL~g~v-------LVAHNa~~FD~~-FL~~~f~r~Gi~~p~~-~~~IDTL~Lar~~l~prl~s~kL~~LA 151 (513)
|.+|+.+|.+|+++.+ +||||+ .||+. ||+++|+++|++.|.. ..++||+.++++.+....++++|.+++
T Consensus 85 ~~~v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~ 163 (204)
T 1w0h_A 85 FPQVLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML 163 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHH
Confidence 9999999999999765 999999 99997 9999999999987653 269999999886554323468999999
Q ss_pred HHhCCC-C-CCCChHHHHHHHHHHHHHHHHHh
Q 010297 152 TYFGLG-Q-QTHRSLDDVRMNLEVLKYCATVL 181 (513)
Q Consensus 152 k~fGI~-~-~aHRALdDA~aTA~Ll~~ll~~L 181 (513)
++||++ . .+|||++||++|+++|.+++++.
T Consensus 164 ~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 164 EKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp HHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 999998 3 58999999999999999988753
No 3
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00 E-value=6.5e-33 Score=271.25 Aligned_cols=175 Identities=18% Similarity=0.241 Sum_probs=151.2
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCce-----------------eEeeeEEEEEcCCCCCCCChhhHHh
Q 010297 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKL-----------------EELHNYSTLVRPADPELISSLSVRC 67 (513)
Q Consensus 5 ~~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~-----------------eivdsFs~lIrP~~~~~I~~~~teI 67 (513)
.+-++|||||+||||+++ ..++|||||||+++++.+ +++++|+++|+|.. +|++.++++
T Consensus 9 ~~~~~~vv~D~ETTGl~~--~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i 84 (242)
T 3mxm_B 9 GHMQTLIFLDLEATGLPS--SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEI 84 (242)
T ss_dssp CCCSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHH
T ss_pred cccceEEEEEeecCCCCC--CCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHh
Confidence 345789999999999987 679999999999987631 46789999999998 899999999
Q ss_pred hCCCHHHHcCC--CCHH-HHHHHHHHHHcC----CeEEEeCcchHHHHHHHHHHHHcCCCCC-CCCcceeHHHHHHHHh-
Q 010297 68 NGITPDAVVSS--PTFA-DIADTVFDILHG----RIWAGHNILRFDCARIREAFAEIGRPAP-EPKGTIDSLALLTQRF- 138 (513)
Q Consensus 68 hGIT~EmLa~A--psf~-EVl~ef~efL~g----~vLVAHNa~~FD~~FL~~~f~r~Gi~~p-~~~~~IDTL~Lar~~l- 138 (513)
||||++||+++ |+|. +|+.+|.+|+++ .++||||+..||++||+++|+++|++.+ .+..++||+.+++..+
T Consensus 85 ~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~ 164 (242)
T 3mxm_B 85 TGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQ 164 (242)
T ss_dssp HCCCHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHH
T ss_pred cCCCHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHh
Confidence 99999999988 8996 999999999998 8999999339999999999999999865 3347899999987543
Q ss_pred --c----CCCCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 139 --G----RRAGDMKMASLATY-FGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 139 --~----prl~s~kL~~LAk~-fGI~-~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
. +..++++|++|+++ ||++ ..+|||++||++|+++|.++.+.+..
T Consensus 165 ~~~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~~~~~ 217 (242)
T 3mxm_B 165 ASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQALLQ 217 (242)
T ss_dssp HHCC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHHH
T ss_pred hcCccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence 2 34689999999965 9999 67999999999999999998887654
No 4
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=1.1e-31 Score=251.28 Aligned_cols=169 Identities=23% Similarity=0.327 Sum_probs=146.2
Q ss_pred CCCCcEEEEEEecCCCCCC---CCCCcEEEEEEEEEeCCceeEe-eeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCC
Q 010297 5 QDRSEIAFFDVETTVPTRP---GQRFAILEFGAILVCPKKLEEL-HNYSTLVRPADPELISSLSVRCNGITPDAVVSSPT 80 (513)
Q Consensus 5 ~~~~~~VVfDlETTGLd~~---g~~deIIEIGAV~Vd~g~~eiv-dsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Aps 80 (513)
.+..+||+||+||||+++. ...++|||||||.++++ .++ +.|+.+|+|.. +++++++++||||++||+++++
T Consensus 6 ~m~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~--~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~ 81 (194)
T 2gui_A 6 TAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNR--RLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPT 81 (194)
T ss_dssp --CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETT--EECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCC
T ss_pred cccCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECC--eEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCC
Confidence 3457899999999999751 13589999999999976 333 57999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeCcchHHHHHHHHHHHHcCCCCCC-C--CcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 010297 81 FADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE-P--KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG 157 (513)
Q Consensus 81 f~EVl~ef~efL~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~-~--~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~ 157 (513)
|.+|+.+|.+|+++.++||||+ .||+.||+++|+++|++.|. . ..++||+.++++ +.|.. .++|.+|+++||++
T Consensus 82 ~~~v~~~~~~~l~~~~lv~hn~-~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~-~~p~~-~~~L~~l~~~~gi~ 158 (194)
T 2gui_A 82 FAEVADEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARK-MFPGK-RNSLDALCARYEID 158 (194)
T ss_dssp HHHHHHHHHHHHTTSEEEETTH-HHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHH-HSTTS-CCSHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCeEEEEch-HHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHH-HcCCC-CCCHHHHHHHcCcC
Confidence 9999999999999999999999 99999999999999998652 1 479999999875 44543 57999999999998
Q ss_pred C---CCCChHHHHHHHHHHHHHHHHH
Q 010297 158 Q---QTHRSLDDVRMNLEVLKYCATV 180 (513)
Q Consensus 158 ~---~aHRALdDA~aTA~Ll~~ll~~ 180 (513)
. .+|||++||++|+++|.+++++
T Consensus 159 ~~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 159 NSKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 3 4899999999999999887654
No 5
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=3.8e-32 Score=261.85 Aligned_cols=179 Identities=18% Similarity=0.241 Sum_probs=150.5
Q ss_pred CCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCc--------------eeEeeeEEEEEcCCCCCCCChhhHH
Q 010297 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKK--------------LEELHNYSTLVRPADPELISSLSVR 66 (513)
Q Consensus 1 m~~t~~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~--------------~eivdsFs~lIrP~~~~~I~~~~te 66 (513)
|...+...+||+||+||||+++ ..++|||||||.++.+. ++++++|+.+|+|.. ++++++++
T Consensus 3 ~~~~~~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~ 78 (238)
T 1y97_A 3 MSEAPRAETFVFLDLEATGLPS--VEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASE 78 (238)
T ss_dssp CCSSCCCSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHH
T ss_pred CCCCCccCeEEEEEeeCCCcCC--CCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHH
Confidence 4445666789999999999986 67899999999998652 256789999999998 89999999
Q ss_pred hhCCCHHHH--cCCCCH-HHHHHHHHHHHcC----CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhc
Q 010297 67 CNGITPDAV--VSSPTF-ADIADTVFDILHG----RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFG 139 (513)
Q Consensus 67 IhGIT~EmL--a~Apsf-~EVl~ef~efL~g----~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~ 139 (513)
+||||++|| .++|+| +++++.|.+|+++ .++||||+..||+.||++.|+++|++++....++||+.++++.+.
T Consensus 79 i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~ 158 (238)
T 1y97_A 79 ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDR 158 (238)
T ss_dssp HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHH
T ss_pred HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHh
Confidence 999999999 578999 4899999999986 799999987899999999999999987754469999999886552
Q ss_pred --------CCCCCCCHHHHHH-HhCCC-CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 140 --------RRAGDMKMASLAT-YFGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 140 --------prl~s~kL~~LAk-~fGI~-~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
+..++++|.++++ +||++ ..+|||++||++|+++|.++.+.+..
T Consensus 159 ~~~p~~~~p~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 159 AHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HC----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCccccCCCCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 5668999999999 69998 68999999999999999999887654
No 6
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=3.9e-31 Score=253.68 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=149.9
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEe---CCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHH-HHcCCCCH
Q 010297 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVC---PKKLEELHNYSTLVRPADPELISSLSVRCNGITPD-AVVSSPTF 81 (513)
Q Consensus 6 ~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd---~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~E-mLa~Apsf 81 (513)
.+..||+||+||||+++ ..++|||||||+++ +|.+.+++.|+.+|+|....+++++++++||||++ |+++++++
T Consensus 27 ~~~~~vviD~ETTGl~~--~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~ 104 (224)
T 2f96_A 27 RGYLPVVVDVETGGFNS--ATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQE 104 (224)
T ss_dssp TTEEEEEEEEEESSSCT--TTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCH
T ss_pred cCCcEEEEEeeCCCCCC--CCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence 45689999999999987 56899999999998 56544678999999995323899999999999997 58999999
Q ss_pred HHHHHHHHHHHc---------CCeEEEeCcchHHHHHHHHHHHHcCCCC-CC-CCcceeHHHHHHHHhcCCCCCCCHHHH
Q 010297 82 ADIADTVFDILH---------GRIWAGHNILRFDCARIREAFAEIGRPA-PE-PKGTIDSLALLTQRFGRRAGDMKMASL 150 (513)
Q Consensus 82 ~EVl~ef~efL~---------g~vLVAHNa~~FD~~FL~~~f~r~Gi~~-p~-~~~~IDTL~Lar~~l~prl~s~kL~~L 150 (513)
.+|+.+|.+|+. +.++||||+ .||++||++.|+++|+.. |+ ...++||+.++++.+ + +++|..|
T Consensus 105 ~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~---~~~L~~l 179 (224)
T 2f96_A 105 EAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-G---QTVLAKA 179 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-S---CCSHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-C---CCCHHHH
Confidence 999999999985 689999999 999999999999999873 32 236999999998654 3 4699999
Q ss_pred HHHhCCC--C-CCCChHHHHHHHHHHHHHHHHHhhcccC
Q 010297 151 ATYFGLG--Q-QTHRSLDDVRMNLEVLKYCATVLFLESS 186 (513)
Q Consensus 151 Ak~fGI~--~-~aHRALdDA~aTA~Ll~~ll~~L~~~~~ 186 (513)
+++||++ . .+|||++||++|+++|.++++++....+
T Consensus 180 ~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~~ 218 (224)
T 2f96_A 180 CQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGG 218 (224)
T ss_dssp HHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 2 6999999999999999999998765443
No 7
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=2.1e-31 Score=271.23 Aligned_cols=172 Identities=19% Similarity=0.251 Sum_probs=149.8
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCce-----------------eEeeeEEEEEcCCCCCCCChhhHHhhC
Q 010297 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKL-----------------EELHNYSTLVRPADPELISSLSVRCNG 69 (513)
Q Consensus 7 ~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~-----------------eivdsFs~lIrP~~~~~I~~~~teIhG 69 (513)
-++|||||+||||+++ ..|+|||||||+++.+.+ +++++|+++|+|.. +|++.++++||
T Consensus 11 ~~tfVv~DlETTGL~~--~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~IhG 86 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPS--SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (314)
T ss_dssp CSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHHS
T ss_pred cCCEEEEEEECCCCCC--CCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhcC
Confidence 5789999999999987 679999999999997632 35689999999998 89999999999
Q ss_pred CCHHHHcCC--CCH-HHHHHHHHHHHcC----CeEEEeC-cchHHHHHHHHHHHHcCCCCCC-CCcceeHHHHHHHH---
Q 010297 70 ITPDAVVSS--PTF-ADIADTVFDILHG----RIWAGHN-ILRFDCARIREAFAEIGRPAPE-PKGTIDSLALLTQR--- 137 (513)
Q Consensus 70 IT~EmLa~A--psf-~EVl~ef~efL~g----~vLVAHN-a~~FD~~FL~~~f~r~Gi~~p~-~~~~IDTL~Lar~~--- 137 (513)
||++||+++ |+| ++++.+|.+|+++ .++|||| + .||+.||+++|+++|++.+. ...++||+.+++..
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga-~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~ 165 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGD-RYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA 165 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTT-TTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTT
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcH-HHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHH
Confidence 999999998 889 7999999999998 8999999 8 99999999999999998752 33589999976522
Q ss_pred hcCC----CCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 138 FGRR----AGDMKMASLATY-FGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 138 l~pr----l~s~kL~~LAk~-fGI~-~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
+++. .++|+|++|+++ ||++ .++|||++||++|+++|.++.+++..
T Consensus 166 ~~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~~l~ 217 (314)
T 3u3y_B 166 SSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQALLQ 217 (314)
T ss_dssp C-------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHHHHH
T ss_pred hCccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2232 479999999998 9999 68999999999999999999887643
No 8
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=261.61 Aligned_cols=174 Identities=19% Similarity=0.214 Sum_probs=150.8
Q ss_pred CCcEEEEEEecCCCCC--CCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHH
Q 010297 7 RSEIAFFDVETTVPTR--PGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADI 84 (513)
Q Consensus 7 ~~~~VVfDlETTGLd~--~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EV 84 (513)
...||+||+||||+++ ....++|||||||+++.+.++++++|+++|+|....+|+++++++||||++||+++++|.+|
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev 156 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 156 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence 4689999999999973 12578999999999997656788999999999875579999999999999999999999999
Q ss_pred HHHHHHHHcCC-------eEEEeCcchHHHH-HHHHHHHHcCCCCCC-CCcceeHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 010297 85 ADTVFDILHGR-------IWAGHNILRFDCA-RIREAFAEIGRPAPE-PKGTIDSLALLTQRFGRRAGDMKMASLATYFG 155 (513)
Q Consensus 85 l~ef~efL~g~-------vLVAHNa~~FD~~-FL~~~f~r~Gi~~p~-~~~~IDTL~Lar~~l~prl~s~kL~~LAk~fG 155 (513)
+.+|.+|+++. ++||||+ .||+. ||+++|+++|++.|. ...++|+..+++..+....+.++|.+|+++||
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcC
Confidence 99999999874 9999999 99999 999999999998763 23699999887754432113489999999999
Q ss_pred CC-C-CCCChHHHHHHHHHHHHHHHHHh
Q 010297 156 LG-Q-QTHRSLDDVRMNLEVLKYCATVL 181 (513)
Q Consensus 156 I~-~-~aHRALdDA~aTA~Ll~~ll~~L 181 (513)
++ . .+|||++||++|+++|.++++..
T Consensus 236 i~~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 236 MDYDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 98 3 58999999999999999988764
No 9
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=251.61 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=144.8
Q ss_pred CcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHHHH
Q 010297 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87 (513)
Q Consensus 8 ~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl~e 87 (513)
..||+||+||||+++....++|||||||+++.+.++++++|+.+|+|....+++++++++||||++||+++++|.+|+.+
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~ 110 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 110 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHHH
Confidence 57999999999998721124999999999998767788999999999874479999999999999999999999999999
Q ss_pred HHHHHcCCeEEEeCcc-------hHHHHH-HHHHHHHcCCCCCCC-CcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC-
Q 010297 88 VFDILHGRIWAGHNIL-------RFDCAR-IREAFAEIGRPAPEP-KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG- 157 (513)
Q Consensus 88 f~efL~g~vLVAHNa~-------~FD~~F-L~~~f~r~Gi~~p~~-~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~- 157 (513)
|.+|+++.++||||+. .||+.| |+++++++|++.|.. ..++|+...++. .....++++|.+|+++||++
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~-~~~~~p~~~L~~l~~~~gi~~ 189 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSF-AMGCWPKNGLLDMNKGLSLQH 189 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHH-HHTSCCTTTHHHHHHHTTCCC
T ss_pred HHHHHhhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHH-HhccCCCCCHHHHHHHcCCCC
Confidence 9999999999999984 899997 789999999987742 369995443321 11223458999999999998
Q ss_pred -CCCCChHHHHHHHHHHHHHHHHH
Q 010297 158 -QQTHRSLDDVRMNLEVLKYCATV 180 (513)
Q Consensus 158 -~~aHRALdDA~aTA~Ll~~ll~~ 180 (513)
..+|||++||++|+++|.+++++
T Consensus 190 ~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 190 IGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp CSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcChHHHHHHHHHHHHHHHHc
Confidence 35899999999999999998864
No 10
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.97 E-value=1.1e-29 Score=244.80 Aligned_cols=172 Identities=20% Similarity=0.161 Sum_probs=150.7
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEe---CCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHH-HHcCCCCH
Q 010297 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVC---PKKLEELHNYSTLVRPADPELISSLSVRCNGITPD-AVVSSPTF 81 (513)
Q Consensus 6 ~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd---~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~E-mLa~Apsf 81 (513)
....||+||+||||+++ ..++|||||||+++ ++.+.+.++|+.+|+|.....++++++++||||++ |+++++++
T Consensus 35 ~~~~~vviD~ETTGl~~--~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~ 112 (235)
T 3v9w_A 35 RGFYPVVIDVETAGFNA--KTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSG 112 (235)
T ss_dssp TTEEEEEEEEEESSSCT--TTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCH
T ss_pred cCCcEEEEEEeCCCCCC--CCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence 45679999999999987 67999999999998 66555689999999996434899999999999999 99999999
Q ss_pred HHHHHHHHHHH---------cCCeEEEeCcchHHHHHHHHHHHHcCCCC-CC-CCcceeHHHHHHHHhcCCCCCCCHHHH
Q 010297 82 ADIADTVFDIL---------HGRIWAGHNILRFDCARIREAFAEIGRPA-PE-PKGTIDSLALLTQRFGRRAGDMKMASL 150 (513)
Q Consensus 82 ~EVl~ef~efL---------~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~-p~-~~~~IDTL~Lar~~l~prl~s~kL~~L 150 (513)
.+++.+|.+|+ ++.++||||+ .||+.||++.|+++|++. |+ ...++||+.+++..+ + +++|.+|
T Consensus 113 ~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~-p---~~~L~~l 187 (235)
T 3v9w_A 113 YEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL-G---QTVLSKA 187 (235)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHH-S---CCSHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHh-C---CCCHHHH
Confidence 99999999999 4689999999 999999999999999964 22 125899999998554 3 4699999
Q ss_pred HHHhCCC-C--CCCChHHHHHHHHHHHHHHHHHhhcc
Q 010297 151 ATYFGLG-Q--QTHRSLDDVRMNLEVLKYCATVLFLE 184 (513)
Q Consensus 151 Ak~fGI~-~--~aHRALdDA~aTA~Ll~~ll~~L~~~ 184 (513)
+++||++ . .+|||++||++|+++|.++++++...
T Consensus 188 ~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~~ 224 (235)
T 3v9w_A 188 CQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRL 224 (235)
T ss_dssp HHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 2 69999999999999999999988754
No 11
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=261.28 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=150.5
Q ss_pred CCcEEEEEEecCCCCC--CCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHH
Q 010297 7 RSEIAFFDVETTVPTR--PGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADI 84 (513)
Q Consensus 7 ~~~~VVfDlETTGLd~--~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EV 84 (513)
...||+||+||||+++ ....++|||||||+++.+.++++++|+++|+|....+|+++++++||||++||+++++|.+|
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV 206 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 206 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 4689999999999963 12578999999999997656888999999999875579999999999999999999999999
Q ss_pred HHHHHHHHcCC-------eEEEeCcchHHHH-HHHHHHHHcCCCCCC-CCcceeHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 010297 85 ADTVFDILHGR-------IWAGHNILRFDCA-RIREAFAEIGRPAPE-PKGTIDSLALLTQRFGRRAGDMKMASLATYFG 155 (513)
Q Consensus 85 l~ef~efL~g~-------vLVAHNa~~FD~~-FL~~~f~r~Gi~~p~-~~~~IDTL~Lar~~l~prl~s~kL~~LAk~fG 155 (513)
+.+|.+|+++. ++||||+ .||+. ||+.+|+++|++.|. ...++|+..+++..+....+.++|.+|+++||
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcC
Confidence 99999999864 9999999 99999 999999999998763 34699999987754432112489999999999
Q ss_pred CC-C-CCCChHHHHHHHHHHHHHHHHHh
Q 010297 156 LG-Q-QTHRSLDDVRMNLEVLKYCATVL 181 (513)
Q Consensus 156 I~-~-~aHRALdDA~aTA~Ll~~ll~~L 181 (513)
++ . .+|||++||++|+++|.++++..
T Consensus 286 i~~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 286 MDYDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 98 3 58999999999999999988764
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.96 E-value=1e-29 Score=257.14 Aligned_cols=173 Identities=14% Similarity=0.191 Sum_probs=146.0
Q ss_pred CCCcEEEEEEecCCCCCCCCCC---cEEEEEEEEEeCCceeEee--eEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCC
Q 010297 6 DRSEIAFFDVETTVPTRPGQRF---AILEFGAILVCPKKLEELH--NYSTLVRPADPELISSLSVRCNGITPDAVVSSPT 80 (513)
Q Consensus 6 ~~~~~VVfDlETTGLd~~g~~d---eIIEIGAV~Vd~g~~eivd--sFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Aps 80 (513)
.-.+||+||+||||+++ ..+ +|||||||+++...+++++ +|+.+|+|.....|+++++++||||++||+++++
T Consensus 17 ~~~~~vviD~ETTGl~~--~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~ 94 (308)
T 3cg7_A 17 PFDTLLILDFETTSDAA--NQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADT 94 (308)
T ss_dssp CCSEEEEEEEEECCBTT--BCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCB
T ss_pred CCCeEEEEEeecCCCCC--CCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCC
Confidence 34689999999999987 444 9999999999753346677 9999999997323999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeCc-----chHHH-HHHHHHHHHcCCCCCCC-CcceeHHHHHHHHhcCC-----CCCCCHH
Q 010297 81 FADIADTVFDILHGRIWAGHNI-----LRFDC-ARIREAFAEIGRPAPEP-KGTIDSLALLTQRFGRR-----AGDMKMA 148 (513)
Q Consensus 81 f~EVl~ef~efL~g~vLVAHNa-----~~FD~-~FL~~~f~r~Gi~~p~~-~~~IDTL~Lar~~l~pr-----l~s~kL~ 148 (513)
|.+|+.+|.+|+++.++||||+ +.||+ .||+++++++|++.|.. ..++||++++++.+... .++++|.
T Consensus 95 ~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~ 174 (308)
T 3cg7_A 95 FDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIG 174 (308)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHH
T ss_pred HHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHH
Confidence 9999999999999877777775 38999 79999999999987742 36999999988655321 1368999
Q ss_pred HHHHHhCCC-C-CCCChHHHHHHHHHHHHHHHHH
Q 010297 149 SLATYFGLG-Q-QTHRSLDDVRMNLEVLKYCATV 180 (513)
Q Consensus 149 ~LAk~fGI~-~-~aHRALdDA~aTA~Ll~~ll~~ 180 (513)
+++++||++ . .+|||++||++|+++|.++++.
T Consensus 175 ~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 175 KMNEYYDLPTIGRAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 999999998 3 4699999999999999998764
No 13
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.96 E-value=4.7e-30 Score=243.33 Aligned_cols=165 Identities=17% Similarity=0.224 Sum_probs=134.0
Q ss_pred CCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeee-EEEEEc-CCC-CCCCChhhH---HhhCCCHHHH
Q 010297 2 GPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN-YSTLVR-PAD-PELISSLSV---RCNGITPDAV 75 (513)
Q Consensus 2 ~~t~~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivds-Fs~lIr-P~~-~~~I~~~~t---eIhGIT~EmL 75 (513)
.|++++.+|||||+||||+++ ..|+|||||||++++ .+.++++ ++.+|+ |.. ...+++.+. .+||||++|+
T Consensus 3 ~~~~~~~~~v~~D~ETTGL~p--~~d~IiEIgaV~~d~-~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l 79 (186)
T 3tr8_A 3 AMDFSDDNLIWLDLEMTGLDP--ERDRIIEIATIVTNS-HLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVK 79 (186)
T ss_dssp CCCCCTTCEEEEEEEESSSCT--TTCCEEEEEEEEECT-TCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHH
T ss_pred cCcCCCCcEEEEEEECCCCCC--CCCceEEEEEEEEcC-CeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHH
Confidence 478889999999999999998 689999999995554 4455555 456686 542 113455554 4569999999
Q ss_pred cCCCCHHHHHHHHHHHH------cCCeEEEeCcchHHHHHHHHHHHHcCCCCCCCCccee--HHH-HHHHHhcCCCCCCC
Q 010297 76 VSSPTFADIADTVFDIL------HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID--SLA-LLTQRFGRRAGDMK 146 (513)
Q Consensus 76 a~Apsf~EVl~ef~efL------~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~ID--TL~-Lar~~l~prl~s~k 146 (513)
++++++++|+.+|++|+ +++++||||+ .||++||+++++++|...+ .+++| |++ |+| .+.|.+.
T Consensus 80 ~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~-~FD~~FL~~~~~~~~~~~~--~~~iDvsTl~elar-~~~P~~~--- 152 (186)
T 3tr8_A 80 NSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSV-CQDRRFLSRYMPRLNQFFH--YRHLDVTTLKILAQ-RWAPQIA--- 152 (186)
T ss_dssp TCCCCHHHHHHHHHHHHTTTSCTTCSCEEESST-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHH-HHCHHHH---
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcH-HHhHHHHHHHHHHcCCCCC--CcEEeHHHHHHHHH-HHCcccc---
Confidence 99999999999999999 7889999999 9999999999999886533 36899 997 887 4555431
Q ss_pred HHHHHHHhCCC-CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 147 MASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 147 L~~LAk~fGI~-~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
-|++ ..+|||++||++++++|+++.+.++.
T Consensus 153 -------~~~~~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 153 -------AAHIKESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp -------TTSCCCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred -------ccCCCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 1677 68999999999999999999998775
No 14
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.96 E-value=1.7e-29 Score=233.68 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=132.1
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEee-eEEEEEcCCC--CCCCChhhHH---hhCCCHHHHcCC
Q 010297 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELH-NYSTLVRPAD--PELISSLSVR---CNGITPDAVVSS 78 (513)
Q Consensus 5 ~~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivd-sFs~lIrP~~--~~~I~~~~te---IhGIT~EmLa~A 78 (513)
+.+.+||+||+||||+++ ..++|||||||+++.+. .+++ .|+.+|+|.. +..+++++++ +||||++|++++
T Consensus 2 ~~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~~~-~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~ 78 (180)
T 2igi_A 2 ANENNLIWIDLEMTGLDP--ERDRIIEIATLVTDANL-NILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAST 78 (180)
T ss_dssp CGGGCEEEEEEEESSSCT--TTCCEEEEEEEEECTTC-CEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCC
T ss_pred CCCCcEEEEEeeCCCCCC--CCCceEEEEEEEEcCCC-cEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcC
Confidence 356789999999999987 67999999999888653 3444 5999999986 1235667754 589999999999
Q ss_pred CCHHHHHHHHHHHHcC------CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCccee--HHH-HHHHHhcCCCCCCCHHH
Q 010297 79 PTFADIADTVFDILHG------RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID--SLA-LLTQRFGRRAGDMKMAS 149 (513)
Q Consensus 79 psf~EVl~ef~efL~g------~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~ID--TL~-Lar~~l~prl~s~kL~~ 149 (513)
+++.+|+.+|.+|+++ .++||||+ .||+.||++++++++..++ .+++| |+. ++++ +.|.+
T Consensus 79 ~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~-~fD~~fL~~~~~~~~~~~~--~~~~d~~tl~~l~~~-~~p~~------- 147 (180)
T 2igi_A 79 MGDREAELATLEFLKQWVPAGKSPICGNSI-GQDRRFLFKYMPELEAYFH--YRYLDVSTLKELARR-WKPEI------- 147 (180)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTTSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEETHHHHHHHHH-HCGGG-------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHHHHHHHHHHHHhccCCC--cceeeHHHHHHHHHH-hChHh-------
Confidence 9999999999999996 69999999 9999999999998874333 35899 884 7664 55542
Q ss_pred HHHHhCCC-CCCCChHHHHHHHHHHHHHHHHHhh
Q 010297 150 LATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLF 182 (513)
Q Consensus 150 LAk~fGI~-~~aHRALdDA~aTA~Ll~~ll~~L~ 182 (513)
..|++ ..+|||++||++|+++|+++.+.++
T Consensus 148 ---~~~i~~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 148 ---LDGFTKQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp ---GGGSCCCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ---hhCCCCcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 13666 5799999999999999999998876
No 15
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.5e-28 Score=231.73 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=129.0
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCC----ChhhHH---hhCCCHHHHcCC
Q 010297 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI----SSLSVR---CNGITPDAVVSS 78 (513)
Q Consensus 6 ~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I----~~~~te---IhGIT~EmLa~A 78 (513)
.+.+||+||+||||+++ ..++|||||||+.+++...+.++|+.+|+|.. ++ ++++.+ +||||++|++++
T Consensus 7 ~~~~~vviD~ETTGl~p--~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~--~i~~~~~~~~~~~~~itGIt~~~l~~~ 82 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDT--DRDSIIEIATIVTDAQLNVLAEGPELAIAHSL--ETLEAMDEWNRNQHRRSGLWQRVLDSQ 82 (194)
T ss_dssp -CCEEEEEEEEESCSCT--TTCCEEEEEEEEEETTCCEEEECCCEECCCCH--HHHHTSCSHHHHHHHHHTHHHHHHHCC
T ss_pred CCCCEEEEEeECCCCCC--CCCccEEEEEEEEcCCcceeccCceEEEeCCH--HHhhccchHHHHHHHhhCCCHHHHhcC
Confidence 56789999999999998 67999999999965442134467999999986 33 555555 499999999999
Q ss_pred CCHHHHHHHHHHHHcCCe------EEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHH---HHHHhcCCCCCCCHHH
Q 010297 79 PTFADIADTVFDILHGRI------WAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL---LTQRFGRRAGDMKMAS 149 (513)
Q Consensus 79 psf~EVl~ef~efL~g~v------LVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~L---ar~~l~prl~s~kL~~ 149 (513)
+++.+|+.+|.+|+++.+ +||||+ .||+.||+++++++|.... .+.+|+..+ ++ .+.|.
T Consensus 83 p~~~ev~~~~~~~l~~~~~~~~~~lvghn~-~FD~~fL~~~~~~~~~~~~--~~~~d~~~l~~l~~-~~~p~-------- 150 (194)
T 2gbz_A 83 VTHAQAEAQTVAFLGEWIRAGASPMCGNSI-CQDRRFLHRQMSRLERYFH--YRNLDVSTIKELAR-RWAPA-------- 150 (194)
T ss_dssp CCHHHHHHHHHHHHTTTCCTTSSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHH-HHCGG--------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHhHHHHHHHHHHhcccCC--CccccHHHHHHHHH-HhCHH--------
Confidence 999999999999999988 999999 9999999999998874332 358897643 33 45543
Q ss_pred HHHHhCCC-CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 150 LATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 150 LAk~fGI~-~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
+++ +++ ..+|||++||++|+++|+++.+.++.
T Consensus 151 ~~~--~i~~~~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 151 VAS--GFAKSSAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp GGT--TCCCCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHh--CCCCCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 222 355 57999999999999999999988765
No 16
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=7.9e-29 Score=232.54 Aligned_cols=160 Identities=19% Similarity=0.308 Sum_probs=129.6
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHHH
Q 010297 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIAD 86 (513)
Q Consensus 7 ~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl~ 86 (513)
..+||+||+||||+++. ...+|||||+|.. .+ .++ |+.+|+|.. +++++++++||||++||+++++|.+|+.
T Consensus 4 ~~~~vviD~ETTGl~~~-~~~~iiei~~v~~-~g--~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~~ 75 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPH-RESGLARCSLVNV-HG--AVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVARL 75 (189)
T ss_dssp --CEEEEEEEEEEETTT-TEEEEEEEEEECT-TC--CEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHHH
T ss_pred CCeEEEEEeECcCcCCC-CCceEEEEEEEeC-CC--CEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHHH
Confidence 46899999999999872 2357889999754 22 344 999999998 8999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHH--HH-hcCCCCCCCHHHHHHH-hCCC-CC--
Q 010297 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLT--QR-FGRRAGDMKMASLATY-FGLG-QQ-- 159 (513)
Q Consensus 87 ef~efL~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar--~~-l~prl~s~kL~~LAk~-fGI~-~~-- 159 (513)
+|.+|+++.++||||+ .||+.||+..+ +. ..++||+.+++ +. ..|..++++|.+|+++ ||++ ..
T Consensus 76 ~~~~~l~~~~lV~hn~-~fD~~~L~~~~-------~~-~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~ 146 (189)
T 1wlj_A 76 EILQLLKGKLVVGHDL-KHDFQALKEDM-------SG-YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSL 146 (189)
T ss_dssp HHHHHHTTSEEEESSH-HHHHHHTTCCC-------TT-CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCT
T ss_pred HHHHHHCCCEEEECCc-HHHHHHHHHhC-------CC-CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCC
Confidence 9999999999999999 99999997542 22 25999998642 21 3345578999999998 7998 34
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhhc
Q 010297 160 -THRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 160 -aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
+|||++||++|+++|+++++.+..
T Consensus 147 ~~H~Al~Da~ata~l~~~l~~~~~~ 171 (189)
T 1wlj_A 147 LGHSSVEDARATMELYQISQRIRAR 171 (189)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.95 E-value=1.1e-27 Score=256.13 Aligned_cols=173 Identities=20% Similarity=0.205 Sum_probs=143.0
Q ss_pred CCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeee-EEEEEcCCCCCCC--ChhhHHhhCCCHHHHcCC
Q 010297 2 GPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN-YSTLVRPADPELI--SSLSVRCNGITPDAVVSS 78 (513)
Q Consensus 2 ~~t~~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivds-Fs~lIrP~~~~~I--~~~~teIhGIT~EmLa~A 78 (513)
...+.+..|||||+||||+++ ..++|||||||+++.++ .++++ |+.+|+|.. .+ ++.+.++||||++||+++
T Consensus 3 ~~~~~~~~~vv~DlETTGl~p--~~d~IIEIgaV~vd~~g-~ii~~~f~~lVkP~~--~ilp~p~a~~IhGIT~e~l~~a 77 (482)
T 2qxf_A 3 NDGKQQSTFLFHDYETFGTHP--ALDRPAQFAAIRTDSEF-NVIGEPEVFYCKPAD--DYLPQPGAVLITGITPQEARAK 77 (482)
T ss_dssp ----CCCEEEEEEEEESSSCT--TTSCEEEEEEEEECTTS-CBCSCCEEEEBCCCT--TCCCCHHHHHHHCCCHHHHHHH
T ss_pred cccCCCCCEEEEEEECCCCCC--CCCeEEEEEEEEEECCC-eEEeeeeEEEECCCC--CCCCCHHHHHHhCCCHHHHhcC
Confidence 334567799999999999987 67999999999998543 45666 999999998 55 688999999999999876
Q ss_pred CC-HHHHHHHHHHHHc--CCeEEEeC-cchHHHHHHHHHHHHcCCCCCC-----CCcceeHHHHHHHHhc--------C-
Q 010297 79 PT-FADIADTVFDILH--GRIWAGHN-ILRFDCARIREAFAEIGRPAPE-----PKGTIDSLALLTQRFG--------R- 140 (513)
Q Consensus 79 ps-f~EVl~ef~efL~--g~vLVAHN-a~~FD~~FL~~~f~r~Gi~~p~-----~~~~IDTL~Lar~~l~--------p- 140 (513)
+. +.+|+.+|.+|++ +.++|||| + .||..||++.|.++|+++.. ...++||+.+++..+. |
T Consensus 78 p~~~~evl~~f~~~l~~~~~~lVaHNs~-~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~ 156 (482)
T 2qxf_A 78 GENEAAFAARIHSLFTVPKTCILGYNNV-RFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPE 156 (482)
T ss_dssp CBCHHHHHHHHHHHHTSTTEEEEESSTT-TTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCB
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEECCH-HHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcc
Confidence 55 5999999999999 89999999 8 99999999999999987432 1357999999886442 2
Q ss_pred ---CCCCCCHHHHHHHhCCC-CCCCChHHHHHHHHHHHHHHHHH
Q 010297 141 ---RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATV 180 (513)
Q Consensus 141 ---rl~s~kL~~LAk~fGI~-~~aHRALdDA~aTA~Ll~~ll~~ 180 (513)
..++++|.+|++++|++ ..+|||++||++|+++++++.++
T Consensus 157 ~~~~~~s~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 157 NDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CTTSSBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44689999999999998 68999999999999999998764
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.04 E-value=3.5e-09 Score=115.89 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=109.1
Q ss_pred CcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHHHH
Q 010297 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87 (513)
Q Consensus 8 ~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl~e 87 (513)
..+++||+||||+++ ..++|++||++. .++ + ..+|.+.. . +++ +.+++++.+++..
T Consensus 26 ~~~va~DtEttgl~~--~~~~iv~I~~~~-~~g--~-----~~yip~~~--~---------~~~---~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 26 APVFAFDTETDSLDN--ISANLVGLSFAI-EPG--V-----AAYIPVAH--D---------YLD---APDQISRERALEL 81 (605)
T ss_dssp SSSEEEEEEESCSCT--TTCCEEEEEEEE-ETT--E-----EEEEECCC--C---------STT---CCCCCCHHHHHHH
T ss_pred CCeEEEEEecCCCCc--ccCceEEEEEEE-cCC--c-----EEEEeccc--c---------ccc---cccccCHHHHHHH
Confidence 467999999999987 578999999884 444 1 13553222 1 111 1345668899999
Q ss_pred HHHHHcCC--eEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC------
Q 010297 88 VFDILHGR--IWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLGQ------ 158 (513)
Q Consensus 88 f~efL~g~--vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f-GI~~------ 158 (513)
|.+|+.+. ++|+||+ .||+.+|.+ +|+..+. .++||+-+++ .+.|...+++|+.|++.| |+..
T Consensus 82 L~~~L~d~~i~kV~hna-k~D~~~L~~----~Gi~l~~--~~~DT~laay-LL~p~~~~~~L~~La~~~Lg~~~i~~~~~ 153 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNL-KYDRGILAN----YGIELRG--IAFDTMLESY-ILNSVAGRHDMDSLAERWLKHKTITFEEI 153 (605)
T ss_dssp HHHHHTCTTSCEEESSH-HHHHHHHHT----TTCCCCC--EEEEHHHHHH-HHCTTSSCCSHHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHcCCCCeEEEECc-HHHHHHHHH----CCCCCCC--ccccHHHHHH-HhCCCCCCCCHHHHHHHhcCCCcccHHHH
Confidence 99999975 8999999 999999975 5876542 5899998876 677777789999999988 7641
Q ss_pred -----C------------CCChHHHHHHHHHHHHHHHHHhhc
Q 010297 159 -----Q------------THRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 159 -----~------------aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
. .|.|..||.++++++..+..++..
T Consensus 154 ~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 154 AGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp HCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 156899999999999998887654
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.82 E-value=2.1e-08 Score=95.68 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=95.0
Q ss_pred CcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHH--hhCCCHHHHcCCCCHHHHH
Q 010297 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR--CNGITPDAVVSSPTFADIA 85 (513)
Q Consensus 8 ~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~te--IhGIT~EmLa~Apsf~EVl 85 (513)
+.-+|+|||+|+.. ...++|+||+|. .+| ..|+..+..-+....+++..+ +.++...-.....++.++.
T Consensus 22 m~r~FlDTEFt~d~---~~~eLISIGlV~-EdG-----rEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~ 92 (190)
T 4hec_A 22 MVRYFYDTEFIEDG---HTIELISIGVVA-EDG-----REYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIR 92 (190)
T ss_dssp EEEEEEEEEEEECS---SCEEEEEEEEEE-TTS-----CEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHH
T ss_pred eeEEEEeeeecCCC---CCCCEEEEEEEc-CCC-----CEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHH
Confidence 45799999999853 467899999985 333 247766654332346666665 5666644444456899999
Q ss_pred HHHHHHHcCC-----eEEEeCcchHHHHHHHHHHHHcC-CCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC--
Q 010297 86 DTVFDILHGR-----IWAGHNILRFDCARIREAFAEIG-RPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-- 157 (513)
Q Consensus 86 ~ef~efL~g~-----vLVAHNa~~FD~~FL~~~f~r~G-i~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~-- 157 (513)
.+|.+|+... .|++|++ .||..+|.+.+...+ .+...+.-..|...+... . ....++
T Consensus 93 ~~L~~FL~~~~~~~~eLwa~~~-~yD~~~L~ql~g~m~~lP~~~p~~~~dlr~~~~~-~-------------g~~~lp~~ 157 (190)
T 4hec_A 93 LDLEEFLRIDGTDSIELWAWVG-AYDHVALCQLWGPMTALPPTVPRFTRELRQLWED-R-------------GCPRMPPR 157 (190)
T ss_dssp HHHHHHTTTTSSCEEEEEESSC-HHHHHHHHTTTSSGGGSCTTSCSSCEEHHHHHHH-T-------------TCCCCCC-
T ss_pred HHHHHHHHhcCCCCCEEEEecc-cccHHHHHHHhcccccCCcccchhhHHHHHHHHH-c-------------CCCCCCCC
Confidence 9999999732 5899999 999999987654321 221112123444333221 1 111222
Q ss_pred -CCCCChHHHHHHHHHHHHHHHH
Q 010297 158 -QQTHRSLDDVRMNLEVLKYCAT 179 (513)
Q Consensus 158 -~~aHRALdDA~aTA~Ll~~ll~ 179 (513)
...|+||.||+.++..|+.+..
T Consensus 158 ~~~~H~AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 158 PRDVHDALVDARDQLRRFRLITS 180 (190)
T ss_dssp ----CCHHHHHHHHHHHHHHHHC
T ss_pred CCCCcCcHHHHHHHHHHHHHHhC
Confidence 3579999999999999988764
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.60 E-value=6.9e-08 Score=107.39 Aligned_cols=140 Identities=17% Similarity=0.115 Sum_probs=93.9
Q ss_pred EEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHHHHHH
Q 010297 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVF 89 (513)
Q Consensus 10 ~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl~ef~ 89 (513)
+|+||+||||+++ ..++|..|.++....+ +. ..+.|.. +.+.+..|.
T Consensus 1 ~vv~D~ETtGl~~--~~d~i~~iqi~~~~~~--~~-----~~~~p~~------------------------i~~~l~~L~ 47 (698)
T 1x9m_A 1 MIVSDIEANALLE--SVTKFHCGVIYDYSTA--EY-----VSYRPSD------------------------FGAYLDALE 47 (698)
T ss_dssp CEEEEEEESSCGG--GCCCEEEEEEEETTTT--EE-----EEECGGG------------------------HHHHHHHHH
T ss_pred CEEEEcCCCCcCC--CCCEEEEEEEEecCCC--cE-----EEEChHH------------------------HHHHHHHHH
Confidence 5899999999987 5676654444321111 11 1333321 123445566
Q ss_pred HHH-cCCeEEEeCcchHHHHHHHHHHHH---cCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh--------CC-
Q 010297 90 DIL-HGRIWAGHNILRFDCARIREAFAE---IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF--------GL- 156 (513)
Q Consensus 90 efL-~g~vLVAHNa~~FD~~FL~~~f~r---~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f--------GI- 156 (513)
+|+ .+.++|+||+..||+.+|.+.+.+ .|+..+. ..++||+-+++ .+.+...+++|+.|++.| |.
T Consensus 48 ~~l~~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~-~~~~DTmlaay-LL~p~~~~~~L~~La~~~L~~sL~~~g~~ 125 (698)
T 1x9m_A 48 AEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPR-ENCIDTLVLSR-LIHSNLKDTDMGLLRSGKLPGALEAWGYR 125 (698)
T ss_dssp HHHHTTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCG-GGEEEHHHHHH-HHTTTSCCCTTTTSCGGGSCSCCCHHHHH
T ss_pred HHHhcCCeEEEcCChHHHHHHHHHhhhhcccCCccCCC-CcchhHHHHHH-HhCCCCCCCCHHHHHHHHcccchhhhccc
Confidence 666 467899999658999999987654 3665441 25899999876 677766678887777766 21
Q ss_pred ------C-------------C--C------------CCChHHHHHHHHHHHHHHHHHhhcc
Q 010297 157 ------G-------------Q--Q------------THRSLDDVRMNLEVLKYCATVLFLE 184 (513)
Q Consensus 157 ------~-------------~--~------------aHRALdDA~aTA~Ll~~ll~~L~~~ 184 (513)
+ . + .|.|..||.++.+++..+..++...
T Consensus 126 lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 126 LGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYF 186 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTS
T ss_pred ccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0 1 4678999999999999998877543
No 21
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.46 E-value=8.3e-06 Score=82.17 Aligned_cols=170 Identities=12% Similarity=0.142 Sum_probs=115.4
Q ss_pred CcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcee----EeeeEEEEEcCCCCCCCChhh
Q 010297 8 SEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE----ELHNYSTLVRPADPELISSLS 64 (513)
Q Consensus 8 ~~~VVfDlETTGLd~~--g-----------------~~deIIEIGAV~Vd~g~~e----ivdsFs~lIrP~~~~~I~~~~ 64 (513)
-.||.+|+|.+|+-.. + ..-.|||+|....+.++.. ..-.|+....|.. ....+.+
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~-d~~~~~S 112 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTE-DMYAQDS 112 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTT-SCCCHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEecccc-ccccHHH
Confidence 4699999999997431 1 1124999999998865321 2345666666654 2344555
Q ss_pred HHh---hCCCHHHH-cCCCCHHHHHHHHHHH----HcCCeEEEeCcchHHHHHHHHHHHHcCCCCC-----------CCC
Q 010297 65 VRC---NGITPDAV-VSSPTFADIADTVFDI----LHGRIWAGHNILRFDCARIREAFAEIGRPAP-----------EPK 125 (513)
Q Consensus 65 teI---hGIT~EmL-a~Apsf~EVl~ef~ef----L~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p-----------~~~ 125 (513)
.++ +||.-... +.|.+..+-.+.+... ..+..||+|+. .||..+|-+.+-.-.++.. ++
T Consensus 113 I~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~-~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP- 190 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRLFFP- 190 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS-
T ss_pred HHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecc-hhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCc-
Confidence 444 68887666 5566665533333322 12568999999 8999999888753333211 12
Q ss_pred cceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 126 ~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~--~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
.++|+..+++. ...+ ..+|..+|+.+|++ ...|.|-+|++.|+.+|.++.+.++.
T Consensus 191 ~vYD~K~l~~~--~~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 191 VIYDVKYLMKS--CKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp CEEEHHHHGGG--STTC-CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHh--cccc-CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 36777776542 1222 34799999999998 57899999999999999999998875
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.44 E-value=2.4e-06 Score=96.14 Aligned_cols=146 Identities=13% Similarity=0.105 Sum_probs=103.2
Q ss_pred CCcEEEEEEecCC---CCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHH
Q 010297 7 RSEIAFFDVETTV---PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFAD 83 (513)
Q Consensus 7 ~~~~VVfDlETTG---Ld~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~E 83 (513)
.-++++||+||+| +++ ..+.|+.||++. .+.... + + .+|- ..+.+...++..+
T Consensus 134 ~l~ilsfDIEt~~~~~p~~--~~d~Ii~Is~~~--~~~~~~---~-t-~~~i---------------~~~~v~~~~~E~~ 189 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEF--GTGPILMISYAD--GSEARV---I-T-WKKI---------------DLPYVDVVSTEKE 189 (775)
T ss_dssp CCCEEEEEEEECCCTTCCT--TCSCEEEEEEEC--SSCEEE---E-E-SSCC---------------CCSSEEECSCHHH
T ss_pred CcEEEEEEEEEcCCCCCCC--CCCcEEEEEEEe--cCCCee---E-e-eccc---------------cccceEEcCCHHH
Confidence 4589999999999 544 678999999752 221111 1 0 1221 1123455678888
Q ss_pred HHHHHHHHHc---CCeEEEeCcchHHHHHHHHHHHHcCCCCCC---------------------CCcceeHHHHHHHHhc
Q 010297 84 IADTVFDILH---GRIWAGHNILRFDCARIREAFAEIGRPAPE---------------------PKGTIDSLALLTQRFG 139 (513)
Q Consensus 84 Vl~ef~efL~---g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~---------------------~~~~IDTL~Lar~~l~ 139 (513)
.+.+|.+++. -.+++|||+..||+++|.+.+..+|++... ....+|++.++++.+
T Consensus 190 LL~~f~~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~- 268 (775)
T 1qht_A 190 MIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI- 268 (775)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-
Confidence 9999999987 358999999999999999999988887532 134789999988632
Q ss_pred CCCCCCCHHHHHH-HhCCCCCC--C------------------ChHHHHHHHHHHHHHHH
Q 010297 140 RRAGDMKMASLAT-YFGLGQQT--H------------------RSLDDVRMNLEVLKYCA 178 (513)
Q Consensus 140 prl~s~kL~~LAk-~fGI~~~a--H------------------RALdDA~aTA~Ll~~ll 178 (513)
.+.+|+|+++|+ .+|..... | -.+.||..+..++.+++
T Consensus 269 -~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 269 -NLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp -CCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567899999997 57875211 1 12568888888876654
No 23
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.28 E-value=1.2e-05 Score=83.35 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=101.7
Q ss_pred CCcEEEEEEecCC--CCCCC-CCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCC--CCChh-hHH--hhCC---CHH--
Q 010297 7 RSEIAFFDVETTV--PTRPG-QRFAILEFGAILVCPKKLEELHNYSTLVRPADPE--LISSL-SVR--CNGI---TPD-- 73 (513)
Q Consensus 7 ~~~~VVfDlETTG--Ld~~g-~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~--~I~~~-~te--IhGI---T~E-- 73 (513)
.-.++.||+||+| +..+. ..+.|+.|+++....+ + ...| .+++++... ++... ... +..+ ...
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~--~-~~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDD--R-FYVF-DLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEIL 180 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTT--E-EEEE-EECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCC--e-EEEE-EEeeccCCCCCccccccccccccccccccccccC
Confidence 4578999999998 21111 2468999998644333 2 1112 235443211 11111 000 1111 111
Q ss_pred -H--HcCCCCHHHHHHHHHHHHc---CCeEEEeCcchHHHHHHHHHHHH-cCCC-------CC-----------------
Q 010297 74 -A--VVSSPTFADIADTVFDILH---GRIWAGHNILRFDCARIREAFAE-IGRP-------AP----------------- 122 (513)
Q Consensus 74 -m--La~Apsf~EVl~ef~efL~---g~vLVAHNa~~FD~~FL~~~f~r-~Gi~-------~p----------------- 122 (513)
. +....+..+.+.+|.+++. ..+++|||+..||+++|.+.+.. +|+. ..
T Consensus 181 ~~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~ 260 (388)
T 1noy_A 181 DRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIY 260 (388)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceE
Confidence 1 1245678889999999996 36999999999999999887776 6521 00
Q ss_pred --CCCcceeHHHHHHHHhcCCCCCCCHHHHHH-HhCCCCCCC-C----------------hHHHHHHHHHHHHH
Q 010297 123 --EPKGTIDSLALLTQRFGRRAGDMKMASLAT-YFGLGQQTH-R----------------SLDDVRMNLEVLKY 176 (513)
Q Consensus 123 --~~~~~IDTL~Lar~~l~prl~s~kL~~LAk-~fGI~~~aH-R----------------ALdDA~aTA~Ll~~ 176 (513)
.....+|++.++++.-.....+|+|+++|+ .+|.....| . .+.||..+++++.+
T Consensus 261 ~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 261 SIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp EETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 011278999998752233378999999998 667653333 2 36788888888877
No 24
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.14 E-value=4.3e-05 Score=87.70 Aligned_cols=156 Identities=12% Similarity=0.143 Sum_probs=104.7
Q ss_pred CcEEEEEEecCCC---CCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHH
Q 010297 8 SEIAFFDVETTVP---TRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADI 84 (513)
Q Consensus 8 ~~~VVfDlETTGL---d~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EV 84 (513)
-+++.||+||++. -|....|.||.|+++....|......+....+.+.. + +....|...++..+.
T Consensus 249 lrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~--~----------~~~~~V~~~~sE~eL 316 (919)
T 3iay_A 249 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCS--P----------ITGSMIFSHATEEEM 316 (919)
T ss_dssp CEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCC--C----------BTTBEEEEESSHHHH
T ss_pred ceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCC--C----------CCCCeEEECCCHHHH
Confidence 4689999999852 222367999999998776653221111111122221 1 122345556788999
Q ss_pred HHHHHHHHc---CCeEEEeCcchHHHHHHHHHHHHcCCCCCC---------------------------------CCcce
Q 010297 85 ADTVFDILH---GRIWAGHNILRFDCARIREAFAEIGRPAPE---------------------------------PKGTI 128 (513)
Q Consensus 85 l~ef~efL~---g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~---------------------------------~~~~I 128 (513)
+.+|.+++. -.+++|||+..||+++|.+.+..+|++.+. ....+
T Consensus 317 L~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~l 396 (919)
T 3iay_A 317 LSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQL 396 (919)
T ss_dssp HHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEE
T ss_pred HHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEEE
Confidence 999999997 378999999999999999999888876310 01378
Q ss_pred eHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC--CCCC-------------------hHHHHHHHHHHHHHH
Q 010297 129 DSLALLTQRFGRRAGDMKMASLATYF-GLGQ--QTHR-------------------SLDDVRMNLEVLKYC 177 (513)
Q Consensus 129 DTL~Lar~~l~prl~s~kL~~LAk~f-GI~~--~aHR-------------------ALdDA~aTA~Ll~~l 177 (513)
|++.++++. ..+.+|+|+++|+++ |... -+|. .+.||..+++++.++
T Consensus 397 Dl~~~~k~~--~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 397 DLLQFIQRE--YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EHHHHHHHH--CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EhHHHHHhh--cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 367899999998765 5431 1221 156888888888775
No 25
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.99 E-value=4.2e-05 Score=87.01 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=100.1
Q ss_pred CCCcEEEEEEec-CCC---CC-C-CCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCC
Q 010297 6 DRSEIAFFDVET-TVP---TR-P-GQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSP 79 (513)
Q Consensus 6 ~~~~~VVfDlET-TGL---d~-~-g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Ap 79 (513)
..-++++||+|| ||. -| + ...+.||+||.+ ..++. +-..++++.. .+..... |....+...+
T Consensus 188 p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~~~g~----~~~~~~~~~~---~~~~~~~---i~~~~v~~~~ 255 (847)
T 1s5j_A 188 PKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--GSDGL----KKVLVLNRND---VNEGSVK---LDGISVERFN 255 (847)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--ETTSC----EEEEEECSSC---CCCCCEE---ETTEEEEEES
T ss_pred CCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--ccCCC----cEEEEEeCCc---ccccccC---CCCCeEEEeC
Confidence 345889999999 742 11 1 023789999986 22211 1224555543 1110001 1212344456
Q ss_pred CHHHHHHHHHHHHcC-CeEEEeCcchHHHHHHHHHHHHcCCCC---CC-----------CCcceeHHHHHHHH----h--
Q 010297 80 TFADIADTVFDILHG-RIWAGHNILRFDCARIREAFAEIGRPA---PE-----------PKGTIDSLALLTQR----F-- 138 (513)
Q Consensus 80 sf~EVl~ef~efL~g-~vLVAHNa~~FD~~FL~~~f~r~Gi~~---p~-----------~~~~IDTL~Lar~~----l-- 138 (513)
+..+.+.+|.+++.+ .+++|||+..||+++|...+.++|+.. |+ ....+|++..+++. +
T Consensus 256 ~E~~LL~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f 335 (847)
T 1s5j_A 256 TEYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAF 335 (847)
T ss_dssp SHHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTS
T ss_pred CHHHHHHHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcc
Confidence 889999999999985 479999999999999999999999852 11 12467888765421 1
Q ss_pred cCCCCCCCHHHHHH-HhCCCC-CCC-------C------hHHHHHHHHHHH
Q 010297 139 GRRAGDMKMASLAT-YFGLGQ-QTH-------R------SLDDVRMNLEVL 174 (513)
Q Consensus 139 ~prl~s~kL~~LAk-~fGI~~-~aH-------R------ALdDA~aTA~Ll 174 (513)
..++.+++|+++|+ .+|... ..+ + .+.||..+.+++
T Consensus 336 ~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 336 EGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp TTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 23457999999999 566542 111 1 356999998885
No 26
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.90 E-value=0.00069 Score=67.13 Aligned_cols=169 Identities=13% Similarity=0.161 Sum_probs=113.1
Q ss_pred CcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcee----EeeeEEEEEcCCCCCCCChhh
Q 010297 8 SEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE----ELHNYSTLVRPADPELISSLS 64 (513)
Q Consensus 8 ~~~VVfDlETTGLd~~--g-----------------~~deIIEIGAV~Vd~g~~e----ivdsFs~lIrP~~~~~I~~~~ 64 (513)
-.||.+|+|.+|+... + ..-.|||+|....+.++.. ..-.|+...+... ....+.+
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~-d~~~~~S 102 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTE-DMYAQDS 102 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTT-SCCCHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcc-cccCHHH
Confidence 5799999999998531 1 1245999999999865332 2345555543332 1334444
Q ss_pred H---HhhCCCHHHH-cCCCCHHHHHHHHHH---HHc-CCeEEEeCcchHHHHHHHHHHHHcCCCCCCC------------
Q 010297 65 V---RCNGITPDAV-VSSPTFADIADTVFD---ILH-GRIWAGHNILRFDCARIREAFAEIGRPAPEP------------ 124 (513)
Q Consensus 65 t---eIhGIT~EmL-a~Apsf~EVl~ef~e---fL~-g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~------------ 124 (513)
. +-+||.-+.. +.|.+..+-.+.+.. .+. +-.||+|+. .||.++|-+.+- +.+.|..
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg-~yDf~yL~k~L~--~~~LP~~~~~F~~~l~~~F 179 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILT--NSNLPEEELDFFEILRLFF 179 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSC-HHHHHHHHHHHH--TSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecC-cchHHHHHHHhc--CCCCCCCHHHHHHHHHHHC
Confidence 3 3458887766 556776643333322 111 347999998 999999988875 3344421
Q ss_pred CcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 125 ~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~--~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
..++||.-+++. ...+ ..+|..+|+.+|++ ...|.|-+|+..|+.+|.++.+.++.
T Consensus 180 P~iyD~K~l~~~--~~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 180 PVIYDVKYLMKS--CKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp SCEEEHHHHGGG--CTTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhHHHHHHH--hccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 146787776542 2222 35799999999998 68899999999999999999998874
No 27
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.76 E-value=5.5e-05 Score=82.13 Aligned_cols=122 Identities=12% Similarity=0.034 Sum_probs=93.0
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHH
Q 010297 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADI 84 (513)
Q Consensus 5 ~~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EV 84 (513)
+...+.+.+|+|+.++++ ...+++=|+.. .++ + .| +| + ++
T Consensus 7 ~~~p~~valDtE~~~~~~--~~a~Lvgi~la--~~~--~---a~--~i--------~---------------------~~ 46 (540)
T 4dfk_A 7 WPPPEGAFVGFVLSRKEP--MWADLLALAAA--RGG--R---VH--RA--------P---------------------EP 46 (540)
T ss_dssp SCCCTTCEEEEEESSSCT--TTCCEEEEEEE--ETT--E---EE--EC--------S---------------------SH
T ss_pred CCCCCceEEEEEecCCcc--CcccEEEEEEE--cCC--E---EE--Ee--------h---------------------hh
Confidence 455677999999999987 55666555443 233 1 11 11 0 25
Q ss_pred HHHHHHHHcCCeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCCCCCCChH
Q 010297 85 ADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSL 164 (513)
Q Consensus 85 l~ef~efL~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~~~aHRAL 164 (513)
+..|.+|+.+...|+||+ .||+. ++|+... ..+||+-+++ .+.|. +++|++|++.|... -.|+|.
T Consensus 47 l~~l~~~l~d~~kV~hn~-K~Dl~-------~~Gi~~~---~~fDT~laAy-LL~p~--~~~L~~La~~yl~~-~gk~a~ 111 (540)
T 4dfk_A 47 YKALRDLKEARGLLAKDL-SVLAL-------REGLGLP---PGDDPMLLAY-LLDPS--NTTPEGVARRYGGE-WTEEAG 111 (540)
T ss_dssp HHHHTTCSSBCSTTHHHH-HHHHH-------HTTCCCC---BCCCHHHHHH-HHCTT--CCCHHHHHHHHTSC-CCSCHH
T ss_pred HHHHHHHHcCCCEEEecc-HHHHH-------HcCCCCC---cceeHHHHHH-HhCCC--CCCHHHHHHHHhhh-hccchH
Confidence 677888998888899999 99998 5788754 4789998876 67776 89999999988643 357899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010297 165 DDVRMNLEVLKYCATVL 181 (513)
Q Consensus 165 dDA~aTA~Ll~~ll~~L 181 (513)
.||.++++++..+..+|
T Consensus 112 ~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 112 ERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998887
No 28
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.75 E-value=0.0013 Score=66.46 Aligned_cols=174 Identities=12% Similarity=0.117 Sum_probs=112.6
Q ss_pred CCCcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcee-----EeeeEEEEEcCCCCCCCC
Q 010297 6 DRSEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE-----ELHNYSTLVRPADPELIS 61 (513)
Q Consensus 6 ~~~~~VVfDlETTGLd~~--g-----------------~~deIIEIGAV~Vd~g~~e-----ivdsFs~lIrP~~~~~I~ 61 (513)
++-.||.+|+|.+|+... + ..-.|||+|....+.++.. ..-.|+...+... ....
T Consensus 36 ~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~-d~~~ 114 (289)
T 1uoc_A 36 SQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKK-EIMS 114 (289)
T ss_dssp TTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTC-CCCC
T ss_pred hhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcc-cccc
Confidence 456899999999997531 1 2345999999999865432 2345665544332 1333
Q ss_pred hhhH---HhhCCCHHHH-cCCCCHHHHHHHHHHH---Hc-CCeEEEeCcchHHHHHHHHHHHHcCCCCCCC---------
Q 010297 62 SLSV---RCNGITPDAV-VSSPTFADIADTVFDI---LH-GRIWAGHNILRFDCARIREAFAEIGRPAPEP--------- 124 (513)
Q Consensus 62 ~~~t---eIhGIT~EmL-a~Apsf~EVl~ef~ef---L~-g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~--------- 124 (513)
+.+. +-+||.-+.. +.|.+..+-.+.+..- +. +-.||+++. .||..+|-+.+- +.+.|..
T Consensus 115 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg-~yDfgyL~k~Lt--~~~LP~~~~~F~~~l~ 191 (289)
T 1uoc_A 115 TESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHA-AYDLGFLINILM--NDSMPNNKEDFEWWVH 191 (289)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESST-THHHHHHHHHHT--TSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccC-cchHHHHHHHhc--cccCCcCHHHHHHHHH
Confidence 3333 3458887666 5566665322222210 11 347999998 999999988774 2333321
Q ss_pred ---CcceeHHHHHHHHhcCC------------CCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 125 ---KGTIDSLALLTQRFGRR------------AGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 125 ---~~~IDTL~Lar~~l~pr------------l~s~kL~~LAk~fGI~--~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
..++|+.-+++....-. ....+|..+|+.+|++ ...|.|-+|+..|+.+|.++.+.++.
T Consensus 192 ~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~~~ 267 (289)
T 1uoc_A 192 QYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSMH 267 (289)
T ss_dssp HHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHHhh
Confidence 15889888876432110 0235799999999998 57899999999999999999998764
No 29
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.73 E-value=0.00091 Score=68.69 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=115.5
Q ss_pred CCCcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcee----EeeeEEEEEcCCCCCCCCh
Q 010297 6 DRSEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE----ELHNYSTLVRPADPELISS 62 (513)
Q Consensus 6 ~~~~~VVfDlETTGLd~~--g-----------------~~deIIEIGAV~Vd~g~~e----ivdsFs~lIrP~~~~~I~~ 62 (513)
++-.||.+|+|.+|+... + ..-.|||+|....+.++.. ..-.|+...+... ....+
T Consensus 43 ~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~-d~~~~ 121 (333)
T 2p51_A 43 ERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQD-DMYAP 121 (333)
T ss_dssp TTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTT-SCCCH
T ss_pred hhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcc-cccCH
Confidence 456899999999998631 1 1124999999999865432 2445666544433 23344
Q ss_pred hhHH---hhCCCHHHH-cCCCCHHHHHHHHHH---HHc-CCeEEEeCcchHHHHHHHHHHHHcCCCCCCC----------
Q 010297 63 LSVR---CNGITPDAV-VSSPTFADIADTVFD---ILH-GRIWAGHNILRFDCARIREAFAEIGRPAPEP---------- 124 (513)
Q Consensus 63 ~~te---IhGIT~EmL-a~Apsf~EVl~ef~e---fL~-g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~---------- 124 (513)
.+.+ -+||.-+.. +.|.++.+..+.+.. .+. +-.||.++. .||.++|-+.+- +.+.|..
T Consensus 122 ~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg-~YDfgyLlK~Lt--~~~LP~~~~eF~~~l~~ 198 (333)
T 2p51_A 122 ESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHS-GYDFAYLLKAMT--QIPLPAEYEEFYKILCI 198 (333)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSC-HHHHHHHHHHHH--CSCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEecc-chhHHHHHHHhc--CCCCCCCHHHHHHHHHH
Confidence 4443 358887776 557776643333332 112 347999998 999999988774 3444421
Q ss_pred --CcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhhcc
Q 010297 125 --KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLFLE 184 (513)
Q Consensus 125 --~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~--~~aHRALdDA~aTA~Ll~~ll~~L~~~ 184 (513)
..++||.-+++.. ..+ .-+|..+|+.+|++ ...|.|-+|+..|+.+|.++.+.++..
T Consensus 199 ~FP~iYD~K~l~~~~--~~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f~~ 259 (333)
T 2p51_A 199 YFPKNYDIKYIMKSV--LNN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDG 259 (333)
T ss_dssp HSSSEEEHHHHHTTT--TCC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCcchhhHHHHHHHh--ccc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 1467777765422 122 35899999999998 688999999999999999999988753
No 30
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.69 E-value=0.00071 Score=79.61 Aligned_cols=166 Identities=13% Similarity=0.154 Sum_probs=101.6
Q ss_pred CCcEEEEEEecCCCC--C---C---CCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCCh-h--hHHhhCCCHHHH
Q 010297 7 RSEIAFFDVETTVPT--R---P---GQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS-L--SVRCNGITPDAV 75 (513)
Q Consensus 7 ~~~~VVfDlETTGLd--~---~---g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~-~--~teIhGIT~EmL 75 (513)
.-+++.||+||++.. + | ...|.||.|+++....+.... ....++.... -..+. + ..+-.|+....+
T Consensus 319 ~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~--~~~~v~~l~~-~~~~~~f~~~~k~~~~~~~~V 395 (1193)
T 2gv9_A 319 AYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL--EHVLLFSLGS-CDLPESHLNELAARGLPTPVV 395 (1193)
T ss_dssp CCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE--EEEEEEEESC-CCCCHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc--ceEEEEECCC-cCCcchhhhhcccccCCCceE
Confidence 457999999998641 1 1 135899999998776432111 1111222111 01111 1 111112211124
Q ss_pred cCCCCHHHHHHHHHHHHc---CCeEEEeCcchHHHHHHHHHH-HHcCCCCCC----------------------------
Q 010297 76 VSSPTFADIADTVFDILH---GRIWAGHNILRFDCARIREAF-AEIGRPAPE---------------------------- 123 (513)
Q Consensus 76 a~Apsf~EVl~ef~efL~---g~vLVAHNa~~FD~~FL~~~f-~r~Gi~~p~---------------------------- 123 (513)
....+..+.+.+|.+++. -.+++|||+..||+++|.+.+ ..+|++.+.
T Consensus 396 ~~~~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i 475 (1193)
T 2gv9_A 396 LEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKV 475 (1193)
T ss_dssp EEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEE
T ss_pred EecCCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEE
Confidence 445678899999999997 369999999999999998775 456665431
Q ss_pred -CCcceeHHHHHHHHhcCCCCCCCHHHHHHH-hCCCC--CCCC-------------------hHHHHHHHHHHHHHH
Q 010297 124 -PKGTIDSLALLTQRFGRRAGDMKMASLATY-FGLGQ--QTHR-------------------SLDDVRMNLEVLKYC 177 (513)
Q Consensus 124 -~~~~IDTL~Lar~~l~prl~s~kL~~LAk~-fGI~~--~aHR-------------------ALdDA~aTA~Ll~~l 177 (513)
....+|++.++++. ..+.+|+|+++|++ +|... -.+. .+.||..+++++.++
T Consensus 476 ~GRv~lDl~~~~~~~--~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 476 NGMVNIDMYGIITDK--IKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TTBEEEEHHHHHTTT--CCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEeehHHHHHHHH--hccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01377888876532 25689999999985 66542 1111 146788888887766
No 31
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=97.41 E-value=0.0011 Score=75.98 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=103.9
Q ss_pred CCcEEEEEEecCCCCCC----CCCCcEEEEEEEEEeCCceeEeeeEEE--EEc-CCC-CCCCChhhH------HhhCCCH
Q 010297 7 RSEIAFFDVETTVPTRP----GQRFAILEFGAILVCPKKLEELHNYST--LVR-PAD-PELISSLSV------RCNGITP 72 (513)
Q Consensus 7 ~~~~VVfDlETTGLd~~----g~~deIIEIGAV~Vd~g~~eivdsFs~--lIr-P~~-~~~I~~~~t------eIhGIT~ 72 (513)
.-+.+.||+|++.-+.. ...++||-|+.. +.... +|.. +++ |.. ..++..... .-..+..
T Consensus 107 ~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~--d~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (903)
T 3qex_A 107 KIRVANFDIEVTSPDGFPEPSQAKHPIDAITHY--DSIDD----RFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPS 180 (903)
T ss_dssp GSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEE--ETTTT----EEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCH
T ss_pred cccEEEEeEEeCCCCCCCCcccCCCCEEEEEEE--eCCCC----EEEEEEeecccccccccccccccccccccccccccc
Confidence 46789999999873321 246889999987 43322 2333 223 211 112221111 1112444
Q ss_pred HHHcC-----CCCHHHHHHHHHHHHc---CCeEEEeCcchHHHHHHHHHHHH-cCCCC-----C----------------
Q 010297 73 DAVVS-----SPTFADIADTVFDILH---GRIWAGHNILRFDCARIREAFAE-IGRPA-----P---------------- 122 (513)
Q Consensus 73 EmLa~-----Apsf~EVl~ef~efL~---g~vLVAHNa~~FD~~FL~~~f~r-~Gi~~-----p---------------- 122 (513)
+.+.+ -++..+.+.+|.+++. -.+++|||+..||+++|.+.+.+ +|+.. +
T Consensus 181 ~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~ 260 (903)
T 3qex_A 181 EIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSR 260 (903)
T ss_dssp HHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEE
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCc
Confidence 44433 3578889999999997 36899999999999999887776 46421 0
Q ss_pred -----CCCcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCC-C-CCCCh----------------HHHHHHHHHHHHH
Q 010297 123 -----EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-Q-QTHRS----------------LDDVRMNLEVLKY 176 (513)
Q Consensus 123 -----~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~-~-~aHRA----------------LdDA~aTA~Ll~~ 176 (513)
.....+|++.++++.-...+.+|+|+++|+++... . ..|.. +.||..+++|+.+
T Consensus 261 ~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 261 EIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 01237899999874324567899999999877443 2 22211 5799999999877
No 32
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=97.28 E-value=0.005 Score=69.70 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=97.6
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHH
Q 010297 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIA 85 (513)
Q Consensus 6 ~~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl 85 (513)
..-+++.||+|+.+- ..|+.||.. ..+. +. -..+.+... .- .+..-.|..-++..+.+
T Consensus 151 p~lrilsfDIE~~~~------g~i~~I~~~--~~~~----~~-v~~l~~~~~-~~--------~~~~~~V~~f~~E~~lL 208 (786)
T 3k59_A 151 PPLKWVSIDIETTRH------GELYCIGLE--GCGQ----RI-VYMLGPENG-DA--------SSLDFELEYVASRPQLL 208 (786)
T ss_dssp CCCCEEEEEEEECTT------SCEEEEEEE--ETTE----EE-EEEESSCCS-CC--------TTCSSEEEEESSHHHHH
T ss_pred CCCeEEEEEEEEcCC------CCEEEEEec--CCCC----Ce-EEEEecCCC-CC--------CCCCceEEEeCCHHHHH
Confidence 445899999999942 258999842 2221 11 122332210 00 01111333445778899
Q ss_pred HHHHHHHc---CCeEEEeCcchHHHHHHHHHHHHcCCCCCC------------------------CCcceeHHHHHHHHh
Q 010297 86 DTVFDILH---GRIWAGHNILRFDCARIREAFAEIGRPAPE------------------------PKGTIDSLALLTQRF 138 (513)
Q Consensus 86 ~ef~efL~---g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~------------------------~~~~IDTL~Lar~~l 138 (513)
.+|.+++. -.+++|||+..||+++|.+.+..+|++... ....+|++.++++..
T Consensus 209 ~~f~~~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~ 288 (786)
T 3k59_A 209 EKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF 288 (786)
T ss_dssp HHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhcc
Confidence 99999987 358999999999999999988888775311 013688998887432
Q ss_pred cCCCCCCCHHHHHHHh-CCCCCCCCh----------------------HHHHHHHHHHHHHH
Q 010297 139 GRRAGDMKMASLATYF-GLGQQTHRS----------------------LDDVRMNLEVLKYC 177 (513)
Q Consensus 139 ~prl~s~kL~~LAk~f-GI~~~aHRA----------------------LdDA~aTA~Ll~~l 177 (513)
..+.+|+|+++|+++ |.....|.. +.||..+++++.++
T Consensus 289 -~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 289 -WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp -CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999986 444333332 57888888888774
No 33
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=96.35 E-value=0.037 Score=58.43 Aligned_cols=134 Identities=8% Similarity=0.044 Sum_probs=86.8
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHHH
Q 010297 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIAD 86 (513)
Q Consensus 7 ~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl~ 86 (513)
....+.||+||++..+ ....+.=| -+..+. -..+|.|.. + + +.+.
T Consensus 128 ~~~~vavDtE~~~~~~--~~~~l~lI---QLa~~~------~~~lidpl~---l--------~-------------~~l~ 172 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRS--FLGLTCLM---QISTRT------EDFIIDTLE---L--------R-------------SDMY 172 (428)
T ss_dssp TCSEEEEEEEEECTTC--SSCEEEEE---EEECSS------CEEEEETTT---T--------G-------------GGGG
T ss_pred cCCeEEEEEEecCCCC--CCCeEEEE---EEEeCC------cEEEEEecc---c--------h-------------hhHH
Confidence 3568999999998865 33433222 222221 124666654 1 0 1123
Q ss_pred HHHHHHcC--CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh-CCC-CCC--
Q 010297 87 TVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLG-QQT-- 160 (513)
Q Consensus 87 ef~efL~g--~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f-GI~-~~a-- 160 (513)
.|..++.+ .+-|+||+ .+|+.+|.+. +|+... ..+||+-.++ .+.+ +.++|+.|++.| |+. ...
T Consensus 173 ~L~~lL~dp~i~KV~H~~-k~Dl~~L~~~---~Gi~~~---~~fDT~lAa~-lL~~--~~~gL~~Lv~~~Lg~~l~K~~~ 242 (428)
T 3saf_A 173 ILNESLTDPAIVKVFHGA-DSDIEWLQKD---FGLYVV---NMFDTHQAAR-LLNL--GRHSLDHLLKLYCNVDSNKQYQ 242 (428)
T ss_dssp GGHHHHTCTTSEEEESSC-HHHHHHHHHH---HCCCCS---SEEEHHHHHH-HTTC--SCCSHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHcCCCceEEEeeh-HHHHHHHHHH---cCCCcC---ceeechhHHH-HhCC--CCCCHHHHHHHHcCCCCCcccc
Confidence 46667764 35699999 9999998644 487642 4899987664 4544 357999998754 654 111
Q ss_pred --------------CChHHHHHHHHHHHHHHHHHhhccc
Q 010297 161 --------------HRSLDDVRMNLEVLKYCATVLFLES 185 (513)
Q Consensus 161 --------------HRALdDA~aTA~Ll~~ll~~L~~~~ 185 (513)
+-|..||..+.+++..+..+|....
T Consensus 243 ~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g 281 (428)
T 3saf_A 243 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 281 (428)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2366899999999999998887653
No 34
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=96.00 E-value=0.056 Score=57.04 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=62.7
Q ss_pred CCeEEEeCcchHHHHHHHHHHHHcCCCCC-------------CCCcceeHHHHHHHH-hcCCCCCCCHHHHHHHhCC---
Q 010297 94 GRIWAGHNILRFDCARIREAFAEIGRPAP-------------EPKGTIDSLALLTQR-FGRRAGDMKMASLATYFGL--- 156 (513)
Q Consensus 94 g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p-------------~~~~~IDTL~Lar~~-l~prl~s~kL~~LAk~fGI--- 156 (513)
+.++||||. =+|+-+|-+.|- | +.| ++ .++||.-++... +....++.+|..|.+++.-
T Consensus 281 ~KpiVGHN~-llDl~~l~~~F~--~-pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~ 355 (430)
T 2a1r_A 281 GKLVIGHNM-LLDVMHTVHQFY--C-PLPADLSEFKEMTTCVFP-RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPF 355 (430)
T ss_dssp CCEEEESSC-HHHHHHHHHHHT--C-CCCSSHHHHHHHHHHHCS-SEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTC
T ss_pred CCceEechh-HHHHHHHHHHhc--c-CCCCCHHHHHHHHHHHCC-ceeehHHhhhccchhhccCCCCHHHHHHHHHhCCC
Confidence 789999999 999998887662 2 333 23 589997776421 2223456789999987741
Q ss_pred -----------------CCCCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 157 -----------------GQQTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 157 -----------------~~~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
.+..|.|-.||.+|+.+|.++...+..
T Consensus 356 ~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 356 NPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp CCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 134699999999999999999988754
No 35
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=95.85 E-value=0.054 Score=50.45 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=60.8
Q ss_pred HHHHHHcC--CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC-----
Q 010297 87 TVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLGQ----- 158 (513)
Q Consensus 87 ef~efL~g--~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f-GI~~----- 158 (513)
.|.+++.+ ...|+||+ .+|+..|.+. +|+... .++|+..++...+.+ ..+++|+.|++.+ |...
T Consensus 87 ~L~~lL~d~~i~Kv~~~~-k~D~~~L~~~---~gi~~~---~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~~K~k~ 158 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGI-EGDQWKLLRD---FDVKLE---SFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKS 158 (208)
T ss_dssp HHHHHHTCTTSEEEESSH-HHHHHHHHHH---HCCCCC---SEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBCCCCHH
T ss_pred HHHHHhcCCCceEEEEee-HHHHHHHHHH---CCCCCC---CEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCcCCCCC
Confidence 46777775 46799999 9999998754 477633 389955556545555 4578999999977 6431
Q ss_pred --------------CCCChHHHHHHHHHHHHHHHHHhhc
Q 010297 159 --------------QTHRSLDDVRMNLEVLKYCATVLFL 183 (513)
Q Consensus 159 --------------~aHRALdDA~aTA~Ll~~ll~~L~~ 183 (513)
+.+-|..||.++.+++..+.+++..
T Consensus 159 ~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 159 IRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp HHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred eeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 0112567888888888887766544
No 36
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.79 E-value=0.024 Score=61.07 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=62.9
Q ss_pred CCeEEEeCcchHHHHHHHHHHHHcCCCCC-------------CCCcceeHHHHHHHH-hcCCCCCCCHHHHHHHhCC---
Q 010297 94 GRIWAGHNILRFDCARIREAFAEIGRPAP-------------EPKGTIDSLALLTQR-FGRRAGDMKMASLATYFGL--- 156 (513)
Q Consensus 94 g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p-------------~~~~~IDTL~Lar~~-l~prl~s~kL~~LAk~fGI--- 156 (513)
+.+|||||. -+|+.+|-+.|- -+.| ++ .++||.-|+... +....++.+|..|++++..
T Consensus 276 ~kpiVgHN~-l~Dl~~l~~~F~---~pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~ 350 (507)
T 3d45_A 276 GKLVVGHNM-LLDVMHTIHQFY---CPLPADLNEFKEMAICVFP-RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPF 350 (507)
T ss_dssp CCEEEESSC-HHHHHHHHHHHT---CSCCSSHHHHHHHHHHHCS-CEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTC
T ss_pred CCeEEEech-HHHHHHHHHHhc---CCCCCCHHHHHHHHHHhCC-ceeEhHhhhhcCccccccCCCCHHHHHHHHhccCC
Confidence 689999999 999999988873 2333 23 488998776420 1112346799999999862
Q ss_pred --C---------------CCCCChHHHHHHHHHHHHHHHHHhh
Q 010297 157 --G---------------QQTHRSLDDVRMNLEVLKYCATVLF 182 (513)
Q Consensus 157 --~---------------~~aHRALdDA~aTA~Ll~~ll~~L~ 182 (513)
+ ...|.|-.||.+|+.+|.++...+.
T Consensus 351 ~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 351 DPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 1 2479999999999999999998764
No 37
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=95.72 E-value=0.049 Score=59.73 Aligned_cols=132 Identities=12% Similarity=0.004 Sum_probs=90.3
Q ss_pred cEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHHHHH
Q 010297 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88 (513)
Q Consensus 9 ~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl~ef 88 (513)
.-..+|+||+|.++ ...+++=|+.. ..+ . ..+|.+. + ..++..|
T Consensus 30 ~~~aldtE~~~~~~--~~a~Lvgisla--~~~--~-----a~yIp~~------------~-------------~~~l~~L 73 (592)
T 3pv8_A 30 DKAALVVEVVEENY--HDAPIVGIAVV--NEH--G-----RFFLRPE------------T-------------ALADPQF 73 (592)
T ss_dssp SEEEEEEECCSSSC--TTCCCCEEEEE--ETT--E-----EEEECHH------------H-------------HTTCHHH
T ss_pred cCcEEEEEEcCCcc--CcccEEEEEEE--cCC--c-----eEEEccc------------h-------------hhHHHHH
Confidence 34689999999987 45555544432 222 1 1344211 1 1234568
Q ss_pred HHHHcC--CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC-------
Q 010297 89 FDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLGQ------- 158 (513)
Q Consensus 89 ~efL~g--~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f-GI~~------- 158 (513)
..|+.+ ...|+||+ .||+.+|. ++|+..+. .++||+-.+. .+.|...+++|++|++.| |...
T Consensus 74 k~lLed~~i~KV~hn~-K~Dl~vL~----~~Gi~l~g--~~fDTmLAAY-LL~p~~~~~~L~~La~~yLg~~l~~~ee~~ 145 (592)
T 3pv8_A 74 VAWLGDETKKKSMFDS-KRAAVALK----WKGIELCG--VSFDLLLAAY-LLDPAQGVDDVAAAAKMKQYEAVRPDEAVY 145 (592)
T ss_dssp HHHHTCTTSEEEESSH-HHHHHHHH----HTTCCCCC--EEEEHHHHHH-HHCGGGCCCSHHHHHGGGTCCSSCCHHHHH
T ss_pred HHHHhCCCCeEEEech-HHHHHHHH----HcCCCCCC--ccchHHHHHH-HcCCCCCCCCHHHHHHHHcCCCCchHHHhc
Confidence 888875 47899999 99999986 46887643 4889998765 677777789999999876 4320
Q ss_pred -------------CCCChHHHHHHHHHHHHHHHHHhhcc
Q 010297 159 -------------QTHRSLDDVRMNLEVLKYCATVLFLE 184 (513)
Q Consensus 159 -------------~aHRALdDA~aTA~Ll~~ll~~L~~~ 184 (513)
..+.|..||..+.+++..+..+|...
T Consensus 146 gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~ 184 (592)
T 3pv8_A 146 GKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRN 184 (592)
T ss_dssp CSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01345779999999999988887653
No 38
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=95.21 E-value=0.31 Score=50.92 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=65.2
Q ss_pred HHHHHHHcC--CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh-CCC-CCC-
Q 010297 86 DTVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLG-QQT- 160 (513)
Q Consensus 86 ~ef~efL~g--~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f-GI~-~~a- 160 (513)
..|.+++.+ .+.|+||+ .+|+.+|.+.+ |+... .++||+-.++ .+.+. +++|+.|++.| |.. ...
T Consensus 149 ~~L~~lL~d~~i~KV~h~~-k~Dl~~L~~~~---Gi~~~---~~fDt~lAa~-LL~~~--~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 149 HILNEVFTNPSIVKVFHGA-FMDIIWLQRDL---GLYVV---GLFDTYHASK-AIGLP--RHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp GGGHHHHTCTTSEEEESSC-HHHHHHHHHHH---CCCCS---SEEEHHHHHH-HHTCS--CCSHHHHHHHHSCCCCCCTT
T ss_pred HHHHHHHcCCCceEEEEeh-HHHHHHHHHHc---CCCcC---CEEEcHHHHH-HhCCC--ccCHHHHHHHHcCCCCCccc
Confidence 346677774 46799999 99999997543 77643 3899997654 56543 68999999977 654 111
Q ss_pred ---------------CChHHHHHHHHHHHHHHHHHhhcc
Q 010297 161 ---------------HRSLDDVRMNLEVLKYCATVLFLE 184 (513)
Q Consensus 161 ---------------HRALdDA~aTA~Ll~~ll~~L~~~ 184 (513)
+-|..||..+..++..+..+|...
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~ 257 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIES 257 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 115689999999999999888664
No 39
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=93.63 E-value=0.31 Score=53.13 Aligned_cols=123 Identities=18% Similarity=0.126 Sum_probs=79.1
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCceeEeeeEEEEEcCCCCCCCChhhHHhhCCCHHHHcCCCCHHHHHH
Q 010297 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIAD 86 (513)
Q Consensus 7 ~~~~VVfDlETTGLd~~g~~deIIEIGAV~Vd~g~~eivdsFs~lIrP~~~~~I~~~~teIhGIT~EmLa~Apsf~EVl~ 86 (513)
...+++||+||+.- + ..+.++-||+. +++. ...|... .. +.
T Consensus 5 ~~~i~~~D~Et~~d-~--~~~~~~~i~~~--~~~~---~~~~~~~---------------------------~~----l~ 45 (575)
T 2py5_A 5 PRKMYSCAFETTTK-V--EDCRVWAYGYM--NIED---HSEYKIG---------------------------NS----LD 45 (575)
T ss_dssp CCCEEEEEEEECCB-T--TBCCEEEEEEE--ESSC---TTCEEEE---------------------------SC----HH
T ss_pred cceEEEEEEEeecC-C--CCCceEEEEEE--eCCc---eEEEEec---------------------------hh----HH
Confidence 46799999999763 3 56778888873 3331 1122110 01 24
Q ss_pred HHHHHHc--CCeEEEeCcchHHHHHHHHHHHHcCCC-------CC------CC-------------------CcceeHHH
Q 010297 87 TVFDILH--GRIWAGHNILRFDCARIREAFAEIGRP-------AP------EP-------------------KGTIDSLA 132 (513)
Q Consensus 87 ef~efL~--g~vLVAHNa~~FD~~FL~~~f~r~Gi~-------~p------~~-------------------~~~IDTL~ 132 (513)
+|++|+. +.++++||. .||..||.+.+...|.. .. .. ...+|++.
T Consensus 46 ~fi~~~~~~~~~i~~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~ 124 (575)
T 2py5_A 46 EFMAWVLKVQADLYFHNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLK 124 (575)
T ss_dssp HHHHHHHHHCCEEEETTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHH
T ss_pred HHHHHHHHcCCEEEEECh-hhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHh
Confidence 5666664 578889999 99999999998887521 01 00 13445554
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhCCCC----CCC----------C------hHHHHHHHHHHHHHHH
Q 010297 133 LLTQRFGRRAGDMKMASLATYFGLGQ----QTH----------R------SLDDVRMNLEVLKYCA 178 (513)
Q Consensus 133 Lar~~l~prl~s~kL~~LAk~fGI~~----~aH----------R------ALdDA~aTA~Ll~~ll 178 (513)
++ ..+|+.+++.|+++. -.| + .+.||+.+++++....
T Consensus 125 ~~---------~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f 181 (575)
T 2py5_A 125 KL---------PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQF 181 (575)
T ss_dssp HS---------CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh---------hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 359999999998751 011 1 3789999999888664
No 40
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=92.69 E-value=0.83 Score=46.68 Aligned_cols=90 Identities=18% Similarity=0.097 Sum_probs=65.5
Q ss_pred HHHHHHHcC--CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh-CCC-CCCC
Q 010297 86 DTVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLG-QQTH 161 (513)
Q Consensus 86 ~ef~efL~g--~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f-GI~-~~aH 161 (513)
..|.+++.+ .+.|+||+ .+|+..|.+. +|+... .++||+-.++ .+.+ ..+++|+.|++.| |.. ...|
T Consensus 64 ~~L~~ll~d~~i~Kv~h~~-k~Dl~~L~~~---~Gi~~~---~~fDt~lAa~-lL~~-~~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHAG-SEDLEVFLNV---FGELPQ---PLIDTQILAA-FCGR-PMSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp HHHHHHHHCTTSEEEESSC-HHHHHHHHHH---HSSCCS---SEEEHHHHHH-HTTC-CTTCCHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHcCCCceEEEeeH-HHHHHHHHHH---cCCCCC---cEEEcHHHHH-HcCC-CCChhHHHHHHHHcCCCCCCCc
Confidence 346677764 36799999 9999999753 477643 4899998665 5555 3479999999966 765 1111
Q ss_pred ----------------ChHHHHHHHHHHHHHHHHHhhcc
Q 010297 162 ----------------RSLDDVRMNLEVLKYCATVLFLE 184 (513)
Q Consensus 162 ----------------RALdDA~aTA~Ll~~ll~~L~~~ 184 (513)
-|..||..+.+++..+..++...
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~ 173 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 15679999999999998887654
No 41
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=90.43 E-value=0.94 Score=43.07 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=62.7
Q ss_pred HHHHHHHcC--CeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcC-CCCCCCHHHHHHH-hCCCC---
Q 010297 86 DTVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATY-FGLGQ--- 158 (513)
Q Consensus 86 ~ef~efL~g--~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~p-rl~s~kL~~LAk~-fGI~~--- 158 (513)
..|.+++.+ -+.|||++ .+|+..|++.+ |+.. .+++|+..++...++. ...+.+|..|++. +|++-
T Consensus 98 ~~L~~lL~d~~i~Kvg~~~-~~D~~~L~~~~---g~~~---~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k 170 (206)
T 1vk0_A 98 KDLYRFFASKFVTFVGVQI-EEDLDLLRENH---GLVI---RNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQL 170 (206)
T ss_dssp HHHHHHHTCSSSEEEESSC-HHHHHHHHHHH---CCCC---SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHH
T ss_pred HHHHHHhcCCCceEEEecc-HHHHHHHHHhc---CCCc---CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCC
Confidence 346777874 47799999 99999997654 7653 2589998887655543 2457789998875 46542
Q ss_pred --------------CCCChHHHHHHHHHHHHHHHH
Q 010297 159 --------------QTHRSLDDVRMNLEVLKYCAT 179 (513)
Q Consensus 159 --------------~aHRALdDA~aTA~Ll~~ll~ 179 (513)
+-+-|..||..+.+++.++.+
T Consensus 171 ~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 171 DSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334578899999988888753
No 42
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=89.14 E-value=1.7 Score=45.76 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHh-CCC--CC--
Q 010297 85 ADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLG--QQ-- 159 (513)
Q Consensus 85 l~ef~efL~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~f-GI~--~~-- 159 (513)
+..|.+++.+...|+||+ .+|+..|+ .+|+.+. ..+||. ++...+.+ ++++|+.|++.| |.. ..
T Consensus 84 l~~L~~lL~d~~KV~h~~-k~Dl~~L~----~~gi~~~---~~fDt~-lAa~lL~~--~~~gL~~L~~~~lg~~~~K~~~ 152 (440)
T 3cym_A 84 WNDFNRAVGDAVWILHDS-LQDLPGFD----ELGMEPQ---RLFDTE-IAARLLGL--KRFGLAAVTEHFLGLTLAKEHS 152 (440)
T ss_dssp HHHHHHHHTTCEEEESSH-HHHHHHHH----HHTCCCC---EEEEHH-HHHHHTTC--SSCSHHHHHHHHHCEECCCCCT
T ss_pred HHHHHHHHCCCCEEEEcC-HHHHHHHH----HcCCcCC---ceehHH-HHHHHhCC--CCCCHHHHHHHHhCCCcccccc
Confidence 345777777778999999 99999885 4577643 589995 45446665 389999999987 642 10
Q ss_pred -------C------CChHHHHHHHHHHHHHHHHHhhcc
Q 010297 160 -------T------HRSLDDVRMNLEVLKYCATVLFLE 184 (513)
Q Consensus 160 -------a------HRALdDA~aTA~Ll~~ll~~L~~~ 184 (513)
. +-|..||..+.+++..+.+.|...
T Consensus 153 ~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~ 190 (440)
T 3cym_A 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQ 190 (440)
T ss_dssp TCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 126789999999999998887654
No 43
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=43.06 E-value=40 Score=38.39 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=59.6
Q ss_pred HHHHHHHcCCeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHhCCCCCCCChHH
Q 010297 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLD 165 (513)
Q Consensus 86 ~ef~efL~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~Lar~~l~prl~s~kL~~LAk~fGI~~~aHRALd 165 (513)
..|..|+.+.-+ |+ .||+.+|.+ +|+... .+.||+-.+. .+.|. +++|++|+..||-....--| .
T Consensus 340 ~~Lk~lLed~~i---n~-K~d~~~L~~----~Gi~~~---~~~Dt~laay-Ll~p~--~~~l~~l~~~~gk~~~~~ya-~ 404 (832)
T 1bgx_T 340 KALRDLKEARGL---LA-KDLSVLALR----EGLGLP---PGDDPMLLAY-LLDPS--NTTPEGVARRYGGEWTEEAG-E 404 (832)
T ss_dssp HHHHHCSSBCBT---TH-HHHHHHHHH----HTCCCC---BCCCHHHHHH-HHCTT--CCSTTHHHHHHSCCCCSSHH-H
T ss_pred HHHHHHHhCCCC---Ch-HHHHHHHHH----cCCccC---cccCHHHHHH-HcCCC--CCCHHHHHHHhCCCchHHHH-H
Confidence 347777875432 99 999998864 588754 4789998765 66665 78999999999743100023 6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 010297 166 DVRMNLEVLKYCATVLF 182 (513)
Q Consensus 166 DA~aTA~Ll~~ll~~L~ 182 (513)
||..+.+++..+..++.
T Consensus 405 da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 405 RAALSERLFANLWGRLE 421 (832)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999877765
No 44
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=37.00 E-value=3.2 Score=48.59 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=28.6
Q ss_pred cCCeEEEeCcchHHHHHHHHHHHHcCCCCCCCCcceeHHHHH
Q 010297 93 HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALL 134 (513)
Q Consensus 93 ~g~vLVAHNa~~FD~~FL~~~f~r~Gi~~p~~~~~IDTL~La 134 (513)
..+++||||+ .||+.++.+++ .+.... ..++|||.|.
T Consensus 193 ~~rlIVGHNV-syDRARI~EeY---~l~~sk-~rFlDTMSLH 229 (1172)
T 3ikm_A 193 QEQLVVGHNV-SFDRAHIREQY---LIQGSR-MRFLDTMSMH 229 (1172)
T ss_dssp SCCCCBCBCS-SSSTTGGGTSS---CSSCCC-CCCCBTTHHH
T ss_pred CccEEEeCCc-chhHHHHHHHH---hcccCC-ceeeechhhh
Confidence 3689999999 99999998654 554333 3699999875
No 45
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=22.40 E-value=1.3e+02 Score=31.93 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=34.3
Q ss_pred CcEEEEEEecCCCCCCC-----------------------CCCcEEEEEEEEEeCCc---eeEeeeEEEEEcCC
Q 010297 8 SEIAFFDVETTVPTRPG-----------------------QRFAILEFGAILVCPKK---LEELHNYSTLVRPA 55 (513)
Q Consensus 8 ~~~VVfDlETTGLd~~g-----------------------~~deIIEIGAV~Vd~g~---~eivdsFs~lIrP~ 55 (513)
-.||.+|+|.||+.... ..-.|||||....+.++ ......|+.++-|.
T Consensus 24 ~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~~~~~~~~~fNf~~fp~ 97 (507)
T 3d45_A 24 ADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK 97 (507)
T ss_dssp CSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSSSSCEEEEEEEEEBCCC
T ss_pred CCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCCCCceeEEeEEEEecCc
Confidence 57999999999985411 12349999999998532 23467788888775
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=22.37 E-value=1.4e+02 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=33.7
Q ss_pred CcEEEEEEecCCCCCCC-----------------------CCCcEEEEEEEEEeCCc---eeEeeeEEEEEcCC
Q 010297 8 SEIAFFDVETTVPTRPG-----------------------QRFAILEFGAILVCPKK---LEELHNYSTLVRPA 55 (513)
Q Consensus 8 ~~~VVfDlETTGLd~~g-----------------------~~deIIEIGAV~Vd~g~---~eivdsFs~lIrP~ 55 (513)
-.||.+|+|.||+.... ..-.|||+|...++.++ ......|+.++-|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 47999999999985310 12359999999987432 23467788887653
Done!