Query 010298
Match_columns 513
No_of_seqs 121 out of 132
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 22:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05278 PEARLI-4: Arabidopsis 100.0 3.3E-61 7.1E-66 474.2 23.3 216 296-511 50-269 (269)
2 KOG1987 Speckle-type POZ prote 99.7 9.7E-16 2.1E-20 148.9 12.9 121 332-467 156-278 (297)
3 PF05266 DUF724: Protein of un 98.0 0.00028 6.1E-09 68.0 16.8 127 368-498 47-180 (190)
4 PRK11637 AmiB activator; Provi 92.8 4.7 0.0001 42.8 16.1 84 413-500 168-256 (428)
5 smart00787 Spc7 Spc7 kinetocho 91.8 7.9 0.00017 40.4 15.9 64 445-508 207-270 (312)
6 PF08317 Spc7: Spc7 kinetochor 91.4 8.6 0.00019 39.8 15.7 31 458-488 232-262 (325)
7 COG4026 Uncharacterized protei 91.2 1.5 3.4E-05 44.6 9.7 58 447-504 147-204 (290)
8 PHA02562 46 endonuclease subun 89.0 9.2 0.0002 41.1 14.1 52 438-489 340-391 (562)
9 TIGR02680 conserved hypothetic 89.0 7.4 0.00016 47.6 14.7 51 386-436 215-265 (1353)
10 PF07889 DUF1664: Protein of u 88.9 6.1 0.00013 36.6 10.9 37 469-505 88-124 (126)
11 TIGR02168 SMC_prok_B chromosom 88.2 21 0.00046 41.0 16.9 21 329-352 112-132 (1179)
12 PF07889 DUF1664: Protein of u 87.4 8.7 0.00019 35.6 10.9 75 415-498 50-124 (126)
13 PRK11637 AmiB activator; Provi 87.3 26 0.00055 37.4 15.9 14 365-378 20-33 (428)
14 PRK13182 racA polar chromosome 87.3 5.3 0.00011 38.6 9.9 134 352-492 4-147 (175)
15 PF09728 Taxilin: Myosin-like 87.2 6.3 0.00014 40.9 11.1 80 426-505 221-300 (309)
16 PF10186 Atg14: UV radiation r 87.0 12 0.00027 36.5 12.5 15 408-422 34-48 (302)
17 TIGR02169 SMC_prok_A chromosom 86.7 21 0.00046 41.3 16.0 48 329-379 110-168 (1164)
18 PRK04863 mukB cell division pr 86.6 22 0.00047 44.4 16.7 157 335-501 250-414 (1486)
19 PF09738 DUF2051: Double stran 86.2 10 0.00022 39.7 11.9 54 414-467 83-137 (302)
20 PRK02224 chromosome segregatio 86.0 18 0.00039 41.4 14.8 17 409-425 490-506 (880)
21 PF04156 IncA: IncA protein; 85.3 33 0.00072 32.2 16.0 57 442-498 130-186 (191)
22 PRK01156 chromosome segregatio 85.1 16 0.00034 42.2 13.9 23 399-421 320-342 (895)
23 PF04740 LXG: LXG domain of WX 85.1 30 0.00066 32.6 13.7 54 362-417 48-104 (204)
24 PF10168 Nup88: Nuclear pore c 85.0 9.2 0.0002 44.1 11.9 28 474-501 636-663 (717)
25 PF02403 Seryl_tRNA_N: Seryl-t 84.6 17 0.00037 31.3 10.8 16 409-424 3-18 (108)
26 COG4026 Uncharacterized protei 84.5 5.4 0.00012 40.8 8.7 8 476-483 197-204 (290)
27 smart00787 Spc7 Spc7 kinetocho 84.4 33 0.00071 36.0 14.6 50 442-491 211-260 (312)
28 cd04776 HTH_GnyR Helix-Turn-He 84.0 15 0.00032 32.8 10.5 32 386-418 35-66 (118)
29 COG1579 Zn-ribbon protein, pos 83.8 24 0.00051 36.0 12.9 19 471-489 125-143 (239)
30 PF13851 GAS: Growth-arrest sp 83.8 46 0.001 32.6 14.7 13 363-375 12-24 (201)
31 PF10186 Atg14: UV radiation r 83.2 21 0.00045 34.9 12.1 24 401-424 63-86 (302)
32 PF10168 Nup88: Nuclear pore c 83.1 16 0.00036 42.1 12.9 150 336-487 501-663 (717)
33 PF15112 DUF4559: Domain of un 82.7 49 0.0011 35.1 15.0 150 340-502 138-306 (307)
34 KOG2391 Vacuolar sorting prote 82.5 8.6 0.00019 41.2 9.6 59 441-502 220-278 (365)
35 PRK02224 chromosome segregatio 82.5 22 0.00048 40.7 13.7 32 344-376 130-161 (880)
36 PF00261 Tropomyosin: Tropomyo 82.3 36 0.00077 33.7 13.4 9 409-417 121-129 (237)
37 PF05600 DUF773: Protein of un 81.8 27 0.00058 38.9 13.5 31 358-389 345-375 (507)
38 PF08317 Spc7: Spc7 kinetochor 81.3 55 0.0012 34.0 14.8 61 447-507 214-274 (325)
39 COG3937 Uncharacterized conser 81.2 11 0.00025 34.3 8.6 38 449-486 68-106 (108)
40 COG1196 Smc Chromosome segrega 81.1 38 0.00082 40.9 15.4 101 329-439 112-224 (1163)
41 KOG0250 DNA repair protein RAD 81.0 17 0.00038 43.7 12.3 56 442-497 401-456 (1074)
42 PF07888 CALCOCO1: Calcium bin 80.8 24 0.00053 39.8 12.8 17 472-488 215-231 (546)
43 PRK04863 mukB cell division pr 80.4 31 0.00068 43.1 14.6 42 447-488 374-415 (1486)
44 TIGR00634 recN DNA repair prot 80.1 22 0.00048 39.3 12.2 93 328-424 108-205 (563)
45 TIGR01843 type_I_hlyD type I s 80.1 38 0.00081 34.7 13.1 40 473-512 242-281 (423)
46 PF02994 Transposase_22: L1 tr 79.9 2.5 5.5E-05 44.6 4.8 43 464-506 145-187 (370)
47 COG1579 Zn-ribbon protein, pos 79.8 41 0.00089 34.4 13.0 33 445-477 106-138 (239)
48 KOG0995 Centromere-associated 79.7 73 0.0016 36.4 15.9 71 433-503 285-358 (581)
49 PF04156 IncA: IncA protein; 79.5 55 0.0012 30.7 14.1 14 470-483 165-178 (191)
50 PF12718 Tropomyosin_1: Tropom 79.1 52 0.0011 30.7 12.5 30 471-500 109-138 (143)
51 TIGR03185 DNA_S_dndD DNA sulfu 78.7 44 0.00096 37.6 14.1 24 481-504 266-289 (650)
52 PRK05431 seryl-tRNA synthetase 78.3 18 0.00039 39.0 10.6 40 467-506 70-109 (425)
53 PF00261 Tropomyosin: Tropomyo 78.0 32 0.00069 34.0 11.5 9 476-484 140-148 (237)
54 PF05266 DUF724: Protein of un 77.4 76 0.0017 31.1 14.9 18 469-486 165-182 (190)
55 KOG1962 B-cell receptor-associ 77.0 38 0.00083 34.2 11.7 76 414-489 130-205 (216)
56 TIGR02168 SMC_prok_B chromosom 76.9 64 0.0014 37.2 15.0 10 409-418 825-834 (1179)
57 PRK09343 prefoldin subunit bet 76.8 40 0.00087 30.5 10.8 43 462-504 70-112 (121)
58 PRK14148 heat shock protein Gr 76.6 4.8 0.0001 39.6 5.3 56 458-513 42-97 (195)
59 KOG0962 DNA repair protein RAD 76.3 27 0.00059 43.0 12.2 25 413-437 170-194 (1294)
60 COG2178 Predicted RNA-binding 76.2 17 0.00037 36.4 8.9 67 339-405 57-149 (204)
61 COG4942 Membrane-bound metallo 75.6 19 0.0004 39.5 9.8 49 448-496 51-99 (420)
62 PF06008 Laminin_I: Laminin Do 75.6 91 0.002 31.1 14.9 13 386-398 118-130 (264)
63 smart00502 BBC B-Box C-termina 74.9 50 0.0011 27.8 12.4 33 470-502 72-104 (127)
64 PRK04778 septation ring format 74.1 1.5E+02 0.0033 33.1 16.6 51 368-424 212-265 (569)
65 KOG0979 Structural maintenance 74.1 76 0.0017 38.5 14.7 56 365-426 199-259 (1072)
66 PF11559 ADIP: Afadin- and alp 73.8 73 0.0016 29.2 14.2 14 367-380 34-47 (151)
67 KOG0964 Structural maintenance 73.6 21 0.00046 42.9 10.1 30 410-439 193-222 (1200)
68 KOG3433 Protein involved in me 73.0 37 0.0008 33.9 10.2 65 442-506 77-145 (203)
69 PRK14161 heat shock protein Gr 72.7 10 0.00022 36.8 6.4 52 462-513 25-76 (178)
70 PRK14140 heat shock protein Gr 72.5 7.1 0.00015 38.4 5.3 58 456-513 37-94 (191)
71 PRK00286 xseA exodeoxyribonucl 72.4 67 0.0015 34.3 13.0 12 353-364 241-252 (438)
72 PRK03598 putative efflux pump 72.0 15 0.00032 37.3 7.7 38 335-372 45-86 (331)
73 PF05278 PEARLI-4: Arabidopsis 72.0 46 0.001 34.6 11.1 56 443-498 208-263 (269)
74 PF00038 Filament: Intermediat 71.8 69 0.0015 32.2 12.2 44 431-474 71-114 (312)
75 KOG0994 Extracellular matrix g 71.6 1.3E+02 0.0027 37.6 15.7 101 387-487 1535-1636(1758)
76 KOG0996 Structural maintenance 71.4 1.2E+02 0.0026 37.5 15.6 47 132-185 655-703 (1293)
77 PF04111 APG6: Autophagy prote 71.3 81 0.0017 32.9 12.9 39 471-509 100-138 (314)
78 PF04111 APG6: Autophagy prote 71.0 22 0.00048 37.0 8.8 21 478-498 100-120 (314)
79 PF03915 AIP3: Actin interacti 71.0 66 0.0014 35.4 12.6 21 158-180 3-23 (424)
80 PF14942 Muted: Organelle biog 70.5 99 0.0021 29.3 14.0 42 444-485 102-144 (145)
81 TIGR00414 serS seryl-tRNA synt 70.1 55 0.0012 35.3 11.7 43 465-507 71-113 (418)
82 PF10267 Tmemb_cc2: Predicted 69.9 50 0.0011 36.0 11.4 109 386-504 207-318 (395)
83 PF11932 DUF3450: Protein of u 69.9 99 0.0022 30.7 12.7 64 440-503 54-117 (251)
84 TIGR00606 rad50 rad50. This fa 69.9 1.6E+02 0.0035 36.2 16.7 142 343-500 150-292 (1311)
85 TIGR03185 DNA_S_dndD DNA sulfu 69.8 1.6E+02 0.0034 33.4 15.7 37 455-491 427-463 (650)
86 PF10146 zf-C4H2: Zinc finger- 69.7 78 0.0017 32.0 12.0 20 408-427 8-27 (230)
87 COG0419 SbcC ATPase involved i 69.5 77 0.0017 37.2 13.6 88 404-495 522-618 (908)
88 PF10473 CENP-F_leu_zip: Leuci 69.0 1.1E+02 0.0023 29.1 14.0 31 438-468 48-78 (140)
89 PRK14160 heat shock protein Gr 68.8 21 0.00046 35.7 7.8 53 461-513 66-118 (211)
90 PLN02939 transferase, transfer 68.7 61 0.0013 39.1 12.6 27 394-420 156-182 (977)
91 PF09726 Macoilin: Transmembra 68.5 90 0.0019 36.3 13.6 23 403-425 462-484 (697)
92 PRK10884 SH3 domain-containing 68.5 45 0.00098 33.1 9.9 9 409-417 76-84 (206)
93 PF09726 Macoilin: Transmembra 68.4 63 0.0014 37.5 12.4 19 410-428 490-508 (697)
94 PRK10869 recombination and rep 68.2 1E+02 0.0022 34.5 13.7 18 410-427 298-315 (553)
95 PLN02320 seryl-tRNA synthetase 68.2 57 0.0012 36.6 11.6 40 468-507 135-174 (502)
96 PF09730 BicD: Microtubule-ass 67.9 1.2E+02 0.0026 35.6 14.4 38 373-415 284-321 (717)
97 KOG0963 Transcription factor/C 67.9 60 0.0013 37.3 11.8 104 396-503 237-343 (629)
98 TIGR00606 rad50 rad50. This fa 67.8 1.7E+02 0.0038 35.9 16.5 23 396-418 794-816 (1311)
99 PF10212 TTKRSYEDQ: Predicted 67.7 1.3E+02 0.0029 34.0 14.2 103 363-497 412-514 (518)
100 TIGR02977 phageshock_pspA phag 67.6 1.3E+02 0.0028 29.5 14.0 34 392-428 39-72 (219)
101 KOG0976 Rho/Rac1-interacting s 67.6 1.4E+02 0.0031 35.9 14.7 29 457-485 380-408 (1265)
102 PF09731 Mitofilin: Mitochondr 67.6 1.7E+02 0.0038 32.3 15.2 34 330-363 211-244 (582)
103 PF07200 Mod_r: Modifier of ru 67.5 93 0.002 28.3 11.1 27 442-468 55-81 (150)
104 KOG1029 Endocytic adaptor prot 66.4 51 0.0011 39.2 11.0 48 442-489 396-449 (1118)
105 TIGR02449 conserved hypothetic 66.1 58 0.0013 27.3 8.5 61 411-484 3-63 (65)
106 KOG0804 Cytoplasmic Zn-finger 65.7 1.6E+02 0.0035 33.1 14.1 12 206-217 134-145 (493)
107 PF03148 Tektin: Tektin family 65.6 1.8E+02 0.0039 31.1 14.3 93 342-439 200-293 (384)
108 PF15290 Syntaphilin: Golgi-lo 65.3 44 0.00095 35.3 9.4 27 457-483 118-144 (305)
109 PF10046 BLOC1_2: Biogenesis o 65.2 95 0.0021 27.1 12.2 52 451-502 47-98 (99)
110 KOG0250 DNA repair protein RAD 65.1 1.6E+02 0.0034 36.1 14.9 48 457-504 373-428 (1074)
111 KOG0977 Nuclear envelope prote 64.4 1.2E+02 0.0027 34.5 13.3 50 449-498 141-190 (546)
112 KOG0964 Structural maintenance 64.4 42 0.0009 40.6 10.0 41 456-496 425-465 (1200)
113 PRK04778 septation ring format 64.3 1.3E+02 0.0028 33.7 13.5 6 332-337 245-250 (569)
114 KOG1003 Actin filament-coating 64.3 1.7E+02 0.0036 29.6 13.9 65 440-504 72-136 (205)
115 PF03112 DUF244: Uncharacteriz 64.0 83 0.0018 30.5 10.3 77 401-491 37-120 (158)
116 KOG0996 Structural maintenance 63.8 73 0.0016 39.3 11.9 38 457-494 536-573 (1293)
117 PRK11519 tyrosine kinase; Prov 63.0 2.2E+02 0.0047 32.8 15.2 22 354-375 230-251 (719)
118 PF12777 MT: Microtubule-bindi 63.0 27 0.00059 36.4 7.6 42 468-509 268-316 (344)
119 KOG0971 Microtubule-associated 62.7 39 0.00084 40.6 9.3 11 74-84 55-65 (1243)
120 PF10473 CENP-F_leu_zip: Leuci 62.3 1.3E+02 0.0029 28.4 11.3 15 437-451 19-33 (140)
121 KOG4657 Uncharacterized conser 62.3 2E+02 0.0043 29.8 14.0 46 452-497 82-127 (246)
122 PF05816 TelA: Toxic anion res 62.2 2E+02 0.0044 30.1 13.7 119 345-467 7-130 (333)
123 PRK14143 heat shock protein Gr 62.1 15 0.00033 37.2 5.4 42 471-512 82-123 (238)
124 PRK14127 cell division protein 61.7 69 0.0015 29.2 8.9 18 463-480 51-68 (109)
125 KOG0933 Structural maintenance 61.6 1.5E+02 0.0032 36.3 13.8 24 391-414 691-714 (1174)
126 PRK12704 phosphodiesterase; Pr 61.6 1.2E+02 0.0026 34.0 12.6 16 488-503 132-147 (520)
127 PF14257 DUF4349: Domain of un 61.2 42 0.00091 33.3 8.3 32 454-485 160-191 (262)
128 TIGR00237 xseA exodeoxyribonuc 61.2 1.3E+02 0.0028 32.7 12.5 44 403-446 279-322 (432)
129 PLN02678 seryl-tRNA synthetase 61.0 93 0.002 34.3 11.5 37 467-503 75-111 (448)
130 cd01109 HTH_YyaN Helix-Turn-He 60.9 54 0.0012 28.6 8.0 57 352-412 4-62 (113)
131 COG0216 PrfA Protein chain rel 60.4 39 0.00084 36.5 8.2 19 463-481 83-101 (363)
132 PF04012 PspA_IM30: PspA/IM30 60.1 1.6E+02 0.0034 28.5 11.7 20 468-487 117-136 (221)
133 PRK14154 heat shock protein Gr 60.0 18 0.00038 36.2 5.3 50 464-513 60-109 (208)
134 COG4477 EzrA Negative regulato 59.8 2.9E+02 0.0062 31.8 15.0 53 367-424 210-264 (570)
135 cd07596 BAR_SNX The Bin/Amphip 59.6 1.5E+02 0.0032 27.5 12.6 22 468-489 150-171 (218)
136 cd07618 BAR_Rich1 The Bin/Amph 59.3 1.2E+02 0.0026 31.0 11.2 37 383-419 110-146 (246)
137 PRK00106 hypothetical protein; 59.2 1.2E+02 0.0025 34.5 12.0 32 474-505 133-164 (535)
138 COG3883 Uncharacterized protei 59.1 2.3E+02 0.005 29.6 13.3 14 367-380 4-17 (265)
139 KOG0243 Kinesin-like protein [ 59.0 2.2E+02 0.0047 34.9 14.6 109 351-459 383-507 (1041)
140 PF08614 ATG16: Autophagy prot 58.9 1.6E+02 0.0034 28.4 11.4 57 440-496 128-184 (194)
141 KOG4674 Uncharacterized conser 58.9 1.4E+02 0.0031 38.4 13.6 115 360-478 1174-1300(1822)
142 KOG2398 Predicted proline-seri 58.5 1.1E+02 0.0025 35.0 11.9 41 448-488 148-189 (611)
143 PF12240 Angiomotin_C: Angiomo 58.1 1E+02 0.0022 31.2 10.1 57 447-504 29-97 (205)
144 COG1775 HgdB Benzoyl-CoA reduc 57.6 53 0.0012 35.7 8.7 55 361-415 133-187 (379)
145 cd07619 BAR_Rich2 The Bin/Amph 57.3 2.2E+02 0.0047 29.4 12.6 36 384-419 111-146 (248)
146 PF12329 TMF_DNA_bd: TATA elem 57.2 1E+02 0.0023 25.9 8.7 22 471-492 48-69 (74)
147 KOG0977 Nuclear envelope prote 57.1 71 0.0015 36.3 9.9 40 461-500 132-171 (546)
148 cd00632 Prefoldin_beta Prefold 56.9 1.3E+02 0.0029 26.1 10.2 15 391-405 27-41 (105)
149 PRK14158 heat shock protein Gr 56.9 23 0.0005 34.9 5.6 48 466-513 50-97 (194)
150 PRK14139 heat shock protein Gr 56.8 23 0.00049 34.8 5.4 40 473-512 49-88 (185)
151 PF07246 Phlebovirus_NSM: Phle 56.8 51 0.0011 34.3 8.1 38 351-389 56-93 (264)
152 PF07106 TBPIP: Tat binding pr 56.6 49 0.0011 30.9 7.5 20 475-494 114-133 (169)
153 KOG0982 Centrosomal protein Nu 56.3 1.2E+02 0.0026 33.9 11.1 35 471-505 298-332 (502)
154 PF10037 MRP-S27: Mitochondria 56.1 2.9E+02 0.0062 30.6 14.1 122 365-489 257-391 (429)
155 PRK05771 V-type ATP synthase s 56.1 58 0.0013 36.7 9.2 21 410-430 45-65 (646)
156 PRK14155 heat shock protein Gr 55.9 16 0.00035 36.3 4.3 43 471-513 28-70 (208)
157 COG2433 Uncharacterized conser 55.9 1.3E+02 0.0028 34.9 11.6 12 356-367 334-345 (652)
158 PRK14153 heat shock protein Gr 55.7 20 0.00043 35.4 4.9 50 464-513 41-90 (194)
159 PF14193 DUF4315: Domain of un 55.4 40 0.00087 29.3 6.1 25 461-485 6-30 (83)
160 KOG0933 Structural maintenance 55.3 2.4E+02 0.0053 34.7 14.1 6 379-384 730-735 (1174)
161 PF13870 DUF4201: Domain of un 55.1 1.9E+02 0.0041 27.3 15.2 68 442-509 77-144 (177)
162 TIGR02449 conserved hypothetic 55.0 72 0.0016 26.8 7.3 51 450-503 4-54 (65)
163 PF12718 Tropomyosin_1: Tropom 54.9 1.8E+02 0.004 27.1 13.6 29 471-499 102-130 (143)
164 cd04770 HTH_HMRTR Helix-Turn-H 54.7 76 0.0016 27.9 7.9 59 353-415 5-65 (123)
165 KOG0018 Structural maintenance 54.5 1.2E+02 0.0027 37.0 11.7 52 448-499 703-754 (1141)
166 PF08614 ATG16: Autophagy prot 54.5 42 0.00092 32.2 6.8 46 457-502 124-169 (194)
167 PF12777 MT: Microtubule-bindi 54.4 40 0.00086 35.2 7.1 50 451-500 230-279 (344)
168 KOG0979 Structural maintenance 54.1 4.8E+02 0.01 32.2 16.2 77 323-404 110-187 (1072)
169 KOG4466 Component of histone d 54.1 1.1E+02 0.0024 32.3 10.0 47 393-439 25-75 (291)
170 PF06160 EzrA: Septation ring 54.0 1.2E+02 0.0027 33.8 11.2 54 450-503 380-433 (560)
171 PF02403 Seryl_tRNA_N: Seryl-t 53.7 1.5E+02 0.0032 25.6 10.8 22 470-491 74-95 (108)
172 PF05010 TACC: Transforming ac 53.5 2.5E+02 0.0054 28.2 16.7 58 368-427 48-109 (207)
173 PHA03158 hypothetical protein; 53.3 1.3E+02 0.0029 30.6 10.1 53 328-384 201-253 (273)
174 KOG0976 Rho/Rac1-interacting s 53.3 1.6E+02 0.0035 35.5 12.0 20 402-421 338-357 (1265)
175 PRK10361 DNA recombination pro 53.3 1.7E+02 0.0036 32.9 11.8 12 492-503 141-152 (475)
176 PF03310 Cauli_DNA-bind: Cauli 53.1 35 0.00075 31.8 5.7 8 417-424 5-12 (121)
177 PF09278 MerR-DNA-bind: MerR, 53.0 97 0.0021 24.1 7.5 60 397-466 4-63 (65)
178 PRK14162 heat shock protein Gr 52.7 30 0.00065 34.2 5.5 49 465-513 48-96 (194)
179 PF10458 Val_tRNA-synt_C: Valy 52.5 53 0.0012 26.6 6.1 52 446-497 8-66 (66)
180 KOG3564 GTPase-activating prot 52.4 1.1E+02 0.0025 34.6 10.3 76 425-500 32-107 (604)
181 PRK14151 heat shock protein Gr 52.3 25 0.00054 34.1 4.9 34 476-509 40-73 (176)
182 PF10267 Tmemb_cc2: Predicted 52.3 1.9E+02 0.004 31.7 11.8 73 395-483 245-318 (395)
183 KOG4674 Uncharacterized conser 52.2 2.9E+02 0.0063 35.9 14.7 158 328-491 20-185 (1822)
184 TIGR00414 serS seryl-tRNA synt 52.1 1.5E+02 0.0032 32.1 11.1 14 471-484 84-97 (418)
185 PRK10884 SH3 domain-containing 51.7 1E+02 0.0022 30.7 9.0 13 391-403 93-105 (206)
186 PF07106 TBPIP: Tat binding pr 51.7 60 0.0013 30.3 7.2 24 461-484 114-137 (169)
187 KOG4302 Microtubule-associated 51.0 2.8E+02 0.0061 32.4 13.5 119 361-492 40-183 (660)
188 COG3883 Uncharacterized protei 50.8 1.4E+02 0.0031 31.1 10.2 17 457-473 81-97 (265)
189 PF05911 DUF869: Plant protein 50.8 1.8E+02 0.0039 34.5 12.1 101 393-493 9-115 (769)
190 PF04799 Fzo_mitofusin: fzo-li 50.7 1.2E+02 0.0026 29.8 9.1 53 438-490 112-164 (171)
191 PF07544 Med9: RNA polymerase 50.5 61 0.0013 27.6 6.4 21 404-424 24-44 (83)
192 PRK10361 DNA recombination pro 50.5 3E+02 0.0066 30.9 13.3 24 476-499 98-121 (475)
193 PF02009 Rifin_STEVOR: Rifin/s 50.3 14 0.00031 38.5 3.1 42 426-467 30-71 (299)
194 PRK14163 heat shock protein Gr 50.1 31 0.00068 34.7 5.3 42 471-512 55-96 (214)
195 PF05615 THOC7: Tho complex su 49.6 2E+02 0.0044 26.0 11.3 49 368-418 20-68 (139)
196 PLN02939 transferase, transfer 49.5 2.5E+02 0.0054 34.2 13.2 129 373-503 161-305 (977)
197 KOG0994 Extracellular matrix g 49.4 4.2E+02 0.0092 33.5 14.8 16 389-404 1610-1625(1758)
198 cd07620 BAR_SH3BP1 The Bin/Amp 49.4 2.1E+02 0.0046 29.7 11.2 84 384-467 111-210 (257)
199 KOG0018 Structural maintenance 49.3 1E+02 0.0023 37.6 10.0 37 468-504 854-890 (1141)
200 TIGR02338 gimC_beta prefoldin, 49.1 1.9E+02 0.0041 25.5 11.1 41 463-503 67-107 (110)
201 cd07616 BAR_Endophilin_B1 The 49.0 2.5E+02 0.0054 28.6 11.4 35 384-418 123-157 (229)
202 PRK14156 heat shock protein Gr 48.9 69 0.0015 31.3 7.3 49 465-513 36-84 (177)
203 PRK03947 prefoldin subunit alp 48.8 1.6E+02 0.0035 26.6 9.2 15 391-405 37-51 (140)
204 KOG2264 Exostosin EXT1L [Signa 48.7 79 0.0017 36.6 8.6 17 362-378 24-40 (907)
205 KOG4552 Vitamin-D-receptor int 48.7 3.3E+02 0.0071 28.2 12.5 51 411-468 50-100 (272)
206 PF09730 BicD: Microtubule-ass 48.6 2E+02 0.0042 33.9 11.9 41 458-498 78-118 (717)
207 PF07798 DUF1640: Protein of u 48.5 2.5E+02 0.0054 26.7 14.3 19 387-405 15-33 (177)
208 PF14735 HAUS4: HAUS augmin-li 48.3 3.2E+02 0.0069 27.9 14.0 54 362-425 104-157 (238)
209 PF10234 Cluap1: Clusterin-ass 48.1 2.5E+02 0.0055 29.2 11.5 34 391-424 117-150 (267)
210 KOG4657 Uncharacterized conser 48.0 3.4E+02 0.0073 28.2 15.1 45 439-483 90-134 (246)
211 PF06160 EzrA: Septation ring 48.0 4.5E+02 0.0097 29.6 15.6 51 369-424 209-261 (560)
212 KOG3850 Predicted membrane pro 48.0 3.3E+02 0.0072 30.3 12.7 24 462-485 345-368 (455)
213 cd07651 F-BAR_PombeCdc15_like 48.0 2.8E+02 0.0061 27.2 13.6 30 468-503 187-216 (236)
214 cd04785 HTH_CadR-PbrR-like Hel 48.0 97 0.0021 27.8 7.7 28 385-413 36-63 (126)
215 COG1382 GimC Prefoldin, chaper 47.8 2.1E+02 0.0046 26.6 9.8 42 462-503 69-110 (119)
216 KOG0161 Myosin class II heavy 47.6 3E+02 0.0065 36.0 14.0 51 451-501 1085-1135(1930)
217 KOG0962 DNA repair protein RAD 47.4 2.2E+02 0.0047 35.7 12.4 112 392-503 786-904 (1294)
218 cd07595 BAR_RhoGAP_Rich-like T 47.2 2.3E+02 0.0051 28.7 11.0 38 383-420 110-147 (244)
219 PF12128 DUF3584: Protein of u 47.2 2.1E+02 0.0046 34.9 12.5 36 401-436 761-799 (1201)
220 PRK00409 recombination and DNA 47.2 2.8E+02 0.006 32.7 13.0 24 331-354 439-462 (782)
221 PRK14144 heat shock protein Gr 47.0 40 0.00086 33.6 5.4 52 462-513 51-102 (199)
222 COG2433 Uncharacterized conser 46.7 2.1E+02 0.0046 33.3 11.5 13 342-354 359-371 (652)
223 PF04286 DUF445: Protein of un 46.7 3.2E+02 0.0069 27.5 15.4 60 362-422 181-245 (367)
224 PF03961 DUF342: Protein of un 46.7 1.4E+02 0.0031 32.2 9.9 18 407-424 326-343 (451)
225 PRK13729 conjugal transfer pil 46.7 65 0.0014 36.0 7.5 29 471-499 98-126 (475)
226 PF10018 Med4: Vitamin-D-recep 46.7 1.1E+02 0.0025 29.3 8.4 51 417-467 11-61 (188)
227 PF09602 PhaP_Bmeg: Polyhydrox 46.3 3E+02 0.0065 27.1 11.7 50 440-489 53-104 (165)
228 PF05384 DegS: Sensor protein 46.2 2.8E+02 0.0061 26.7 14.4 26 409-434 28-54 (159)
229 KOG0804 Cytoplasmic Zn-finger 46.2 2.3E+02 0.0049 32.0 11.3 14 336-349 325-338 (493)
230 PF05983 Med7: MED7 protein; 46.1 82 0.0018 30.1 7.2 17 368-384 83-99 (162)
231 KOG0570 Transcriptional coacti 45.9 1.7E+02 0.0037 29.8 9.5 60 437-502 131-190 (223)
232 PF13874 Nup54: Nucleoporin co 45.8 1E+02 0.0022 28.4 7.6 32 471-502 66-97 (141)
233 KOG2196 Nuclear porin [Nuclear 45.6 2.9E+02 0.0063 28.8 11.3 141 334-498 94-247 (254)
234 KOG0796 Spliceosome subunit [R 45.6 3.1E+02 0.0067 29.5 11.8 65 369-437 84-151 (319)
235 PRK14157 heat shock protein Gr 45.5 34 0.00073 34.8 4.8 35 476-510 97-131 (227)
236 PF14915 CCDC144C: CCDC144C pr 45.5 3.9E+02 0.0084 28.6 12.5 35 468-502 212-246 (305)
237 cd00632 Prefoldin_beta Prefold 45.3 1.6E+02 0.0036 25.5 8.5 30 471-500 71-100 (105)
238 PRK13428 F0F1 ATP synthase sub 45.2 4.4E+02 0.0096 28.9 13.4 33 375-407 16-48 (445)
239 KOG0995 Centromere-associated 45.2 3.8E+02 0.0083 31.0 13.1 95 391-488 273-371 (581)
240 COG5185 HEC1 Protein involved 44.9 3.4E+02 0.0075 31.0 12.5 62 418-479 285-360 (622)
241 PRK09841 cryptic autophosphory 44.7 1E+02 0.0022 35.4 8.9 15 410-424 269-283 (726)
242 cd01108 HTH_CueR Helix-Turn-He 44.4 1.2E+02 0.0025 27.3 7.6 59 353-415 5-65 (127)
243 PF05667 DUF812: Protein of un 44.3 5E+02 0.011 29.9 14.1 15 19-33 34-48 (594)
244 PF12325 TMF_TATA_bd: TATA ele 43.7 1.4E+02 0.0031 27.5 8.1 60 418-477 51-110 (120)
245 TIGR01477 RIFIN variant surfac 43.7 49 0.0011 35.7 5.8 41 427-467 54-94 (353)
246 PLN02320 seryl-tRNA synthetase 43.7 1.5E+02 0.0033 33.4 9.8 15 471-485 145-159 (502)
247 KOG2077 JNK/SAPK-associated pr 43.6 1.7E+02 0.0037 34.0 10.2 32 370-401 304-335 (832)
248 PF13870 DUF4201: Domain of un 43.6 2.9E+02 0.0062 26.1 10.6 12 407-418 48-59 (177)
249 PRK14141 heat shock protein Gr 43.5 38 0.00083 33.8 4.8 28 446-473 42-69 (209)
250 TIGR02051 MerR Hg(II)-responsi 43.5 2.2E+02 0.0047 25.5 9.2 57 353-413 4-62 (124)
251 PRK14146 heat shock protein Gr 43.2 43 0.00092 33.6 5.0 51 463-513 61-111 (215)
252 PRK14145 heat shock protein Gr 43.0 51 0.0011 32.7 5.5 49 465-513 54-102 (196)
253 PF11932 DUF3450: Protein of u 42.9 3.5E+02 0.0076 26.9 11.4 51 415-465 42-93 (251)
254 KOG3192 Mitochondrial J-type c 42.6 1.5E+02 0.0031 29.2 8.3 33 457-493 116-148 (168)
255 PF10805 DUF2730: Protein of u 42.6 1.9E+02 0.0042 25.6 8.5 43 440-482 47-91 (106)
256 KOG4403 Cell surface glycoprot 42.6 5.6E+02 0.012 29.1 14.1 99 363-467 212-327 (575)
257 cd04777 HTH_MerR-like_sg1 Heli 42.5 1.6E+02 0.0034 25.5 7.9 26 386-412 35-60 (107)
258 cd01111 HTH_MerD Helix-Turn-He 42.5 2.1E+02 0.0045 25.3 8.7 26 385-411 36-61 (107)
259 PF05667 DUF812: Protein of un 42.2 5.6E+02 0.012 29.6 14.0 10 79-88 37-46 (594)
260 PF10046 BLOC1_2: Biogenesis o 42.1 2.4E+02 0.0051 24.7 10.3 62 430-495 37-98 (99)
261 PF06156 DUF972: Protein of un 42.0 1.4E+02 0.0031 26.9 7.7 13 444-456 24-36 (107)
262 PF10779 XhlA: Haemolysin XhlA 42.0 1.1E+02 0.0023 25.3 6.4 15 471-485 35-49 (71)
263 KOG0971 Microtubule-associated 41.7 7.7E+02 0.017 30.5 15.4 21 407-427 331-351 (1243)
264 PF04912 Dynamitin: Dynamitin 41.6 4.6E+02 0.01 27.9 13.8 23 461-483 341-363 (388)
265 PF00042 Globin: Globin plant 41.6 72 0.0016 26.5 5.5 40 341-380 21-74 (110)
266 PRK14127 cell division protein 41.6 1.5E+02 0.0032 27.1 7.7 12 474-485 89-100 (109)
267 PRK13169 DNA replication intia 41.6 1.4E+02 0.003 27.3 7.6 48 424-471 4-51 (110)
268 PF10243 MIP-T3: Microtubule-b 41.6 8.7 0.00019 42.3 0.0 125 337-487 390-533 (539)
269 PF05781 MRVI1: MRVI1 protein; 41.5 2.3E+02 0.005 32.4 10.7 28 387-418 187-216 (538)
270 PLN02678 seryl-tRNA synthetase 41.4 2.4E+02 0.0051 31.3 10.7 86 400-489 19-104 (448)
271 PRK10476 multidrug resistance 41.4 1.8E+02 0.0039 29.8 9.4 21 492-512 198-218 (346)
272 KOG4643 Uncharacterized coiled 41.3 4.6E+02 0.0099 32.5 13.4 47 451-497 469-515 (1195)
273 KOG4438 Centromere-associated 41.2 4E+02 0.0087 29.8 12.2 71 430-500 154-239 (446)
274 KOG3976 Mitochondrial F1F0-ATP 41.2 4.4E+02 0.0095 27.5 14.1 13 265-277 44-56 (247)
275 PF06005 DUF904: Protein of un 41.2 2.2E+02 0.0048 24.1 9.5 17 463-479 53-69 (72)
276 PF05384 DegS: Sensor protein 41.1 3.4E+02 0.0074 26.2 12.2 13 412-424 59-71 (159)
277 COG3879 Uncharacterized protei 41.0 1.5E+02 0.0032 30.7 8.6 69 423-492 32-104 (247)
278 PF06008 Laminin_I: Laminin Do 40.9 3.8E+02 0.0083 26.8 15.5 21 384-404 146-166 (264)
279 PRK14150 heat shock protein Gr 40.6 60 0.0013 31.9 5.5 40 474-513 56-95 (193)
280 TIGR02047 CadR-PbrR Cd(II)/Pb( 40.5 1.5E+02 0.0032 26.7 7.7 27 384-411 35-61 (127)
281 PF12252 SidE: Dot/Icm substra 40.5 3.4E+02 0.0074 33.8 12.3 207 278-508 871-1120(1439)
282 cd04784 HTH_CadR-PbrR Helix-Tu 40.4 1.6E+02 0.0034 26.3 7.7 26 385-411 36-61 (127)
283 KOG3876 Arfaptin and related p 40.2 3.2E+02 0.007 29.1 10.8 65 349-421 174-247 (341)
284 KOG4797 Transcriptional regula 40.2 1E+02 0.0022 28.7 6.5 31 462-492 66-96 (123)
285 TIGR00763 lon ATP-dependent pr 40.1 2E+02 0.0044 33.4 10.4 37 390-426 175-211 (775)
286 PLN02372 violaxanthin de-epoxi 40.0 3E+02 0.0065 30.8 11.0 27 469-495 424-450 (455)
287 cd04769 HTH_MerR2 Helix-Turn-H 39.9 93 0.002 27.4 6.2 71 386-467 36-107 (116)
288 PF07544 Med9: RNA polymerase 39.7 92 0.002 26.5 5.9 37 464-500 46-82 (83)
289 PF02601 Exonuc_VII_L: Exonucl 39.6 3.9E+02 0.0084 27.2 11.4 14 353-366 124-137 (319)
290 TIGR01069 mutS2 MutS2 family p 39.5 5.8E+02 0.013 30.1 14.0 25 330-354 433-457 (771)
291 KOG0963 Transcription factor/C 39.4 3.8E+02 0.0083 31.2 12.1 13 372-384 88-100 (629)
292 KOG4360 Uncharacterized coiled 39.3 6.6E+02 0.014 29.0 14.5 28 342-373 159-186 (596)
293 COG1842 PspA Phage shock prote 39.1 4.2E+02 0.0092 26.8 15.1 59 365-425 7-69 (225)
294 PF06705 SF-assemblin: SF-asse 39.1 4E+02 0.0087 26.5 14.4 53 432-484 107-160 (247)
295 PF09789 DUF2353: Uncharacteri 39.0 5.2E+02 0.011 27.7 14.4 26 476-501 202-227 (319)
296 PF15066 CAGE1: Cancer-associa 39.0 3.8E+02 0.0082 30.5 11.7 36 329-365 264-301 (527)
297 cd07594 BAR_Endophilin_B The B 38.5 2.6E+02 0.0057 28.3 9.7 35 384-418 123-157 (229)
298 KOG1029 Endocytic adaptor prot 38.3 3.1E+02 0.0067 33.1 11.3 31 390-421 392-422 (1118)
299 TIGR01612 235kDa-fam reticuloc 38.1 4.8E+02 0.01 35.2 13.6 63 439-501 555-617 (2757)
300 PRK10698 phage shock protein P 38.1 3.5E+02 0.0077 26.9 10.5 18 462-479 126-143 (222)
301 cd04779 HTH_MerR-like_sg4 Heli 38.0 3.3E+02 0.0072 25.2 9.8 25 386-411 36-60 (134)
302 PF12128 DUF3584: Protein of u 37.9 6.9E+02 0.015 30.8 14.8 37 343-379 367-403 (1201)
303 KOG1176 Acyl-CoA synthetase [L 37.8 23 0.00051 39.5 2.6 38 320-360 425-462 (537)
304 KOG1003 Actin filament-coating 37.7 3.3E+02 0.0071 27.7 10.1 31 392-425 117-147 (205)
305 cd04783 HTH_MerR1 Helix-Turn-H 37.7 1.9E+02 0.0042 25.7 7.9 26 385-411 36-61 (126)
306 PF04849 HAP1_N: HAP1 N-termin 37.4 4.2E+02 0.0091 28.3 11.3 87 408-494 160-265 (306)
307 PRK13729 conjugal transfer pil 37.3 1.4E+02 0.003 33.6 8.2 50 451-500 71-120 (475)
308 COG1382 GimC Prefoldin, chaper 37.3 2.7E+02 0.0059 25.9 8.9 24 458-481 86-109 (119)
309 PF04949 Transcrip_act: Transc 37.3 2.6E+02 0.0055 27.4 8.9 35 448-489 111-145 (159)
310 TIGR02132 phaR_Bmeg polyhydrox 37.2 3.8E+02 0.0082 26.9 10.2 68 389-459 70-138 (189)
311 PRK10227 DNA-binding transcrip 36.8 1.7E+02 0.0038 26.9 7.6 26 385-411 36-61 (135)
312 PRK14159 heat shock protein Gr 36.7 63 0.0014 31.5 5.0 40 473-512 40-79 (176)
313 KOG2441 mRNA splicing factor/p 36.7 2.2E+02 0.0048 31.8 9.4 57 448-505 313-382 (506)
314 TIGR01069 mutS2 MutS2 family p 36.6 2.4E+02 0.0052 33.1 10.4 15 448-462 545-559 (771)
315 TIGR02338 gimC_beta prefoldin, 36.5 3E+02 0.0065 24.2 8.8 11 470-480 95-105 (110)
316 PF10174 Cast: RIM-binding pro 36.2 5.1E+02 0.011 30.9 12.8 27 441-467 342-368 (775)
317 KOG0104 Molecular chaperones G 36.2 4.8E+02 0.01 31.5 12.4 34 380-419 646-679 (902)
318 PF15233 SYCE1: Synaptonemal c 36.1 3.9E+02 0.0085 25.5 13.0 93 370-467 8-110 (134)
319 PF15290 Syntaphilin: Golgi-lo 36.1 2.2E+02 0.0048 30.3 9.0 20 479-498 119-138 (305)
320 TIGR02044 CueR Cu(I)-responsiv 36.0 1.8E+02 0.004 26.0 7.5 59 352-414 4-64 (127)
321 KOG4568 Cytoskeleton-associate 36.0 1.7E+02 0.0037 34.1 8.9 82 410-491 580-661 (664)
322 PRK14147 heat shock protein Gr 36.0 62 0.0013 31.3 4.8 31 445-475 28-58 (172)
323 KOG0050 mRNA splicing protein 35.5 5.5E+02 0.012 29.7 12.3 63 362-427 456-518 (617)
324 PF05701 WEMBL: Weak chloropla 35.5 5.8E+02 0.013 28.5 12.7 16 402-417 219-234 (522)
325 cd04782 HTH_BltR Helix-Turn-He 34.9 1.8E+02 0.0039 25.0 7.0 26 385-411 36-61 (97)
326 TIGR01005 eps_transp_fam exopo 34.9 7.5E+02 0.016 28.4 14.6 19 357-375 160-178 (754)
327 PF05529 Bap31: B-cell recepto 34.8 2.5E+02 0.0053 26.8 8.6 23 463-485 168-190 (192)
328 PF12999 PRKCSH-like: Glucosid 34.7 2E+02 0.0044 28.3 8.1 14 473-486 156-169 (176)
329 KOG0978 E3 ubiquitin ligase in 34.6 8.5E+02 0.018 28.9 14.6 57 443-499 567-623 (698)
330 PF12329 TMF_DNA_bd: TATA elem 34.6 2.8E+02 0.0061 23.3 8.7 31 469-499 39-69 (74)
331 PRK05431 seryl-tRNA synthetase 34.6 3E+02 0.0064 29.9 10.1 17 408-424 42-58 (425)
332 PF09731 Mitofilin: Mitochondr 34.3 6.9E+02 0.015 27.8 14.7 11 338-348 226-236 (582)
333 PF03999 MAP65_ASE1: Microtubu 34.1 13 0.00029 41.6 0.0 126 368-508 167-303 (619)
334 PRK15422 septal ring assembly 34.0 3.3E+02 0.0071 24.0 9.4 16 412-427 8-23 (79)
335 KOG4809 Rab6 GTPase-interactin 34.0 5.4E+02 0.012 29.9 12.0 28 474-501 418-445 (654)
336 PF06005 DUF904: Protein of un 33.8 2.9E+02 0.0064 23.3 8.4 10 471-480 54-63 (72)
337 PF11338 DUF3140: Protein of u 33.5 52 0.0011 29.4 3.5 30 375-405 42-71 (92)
338 PRK01194 V-type ATP synthase s 33.4 4.5E+02 0.0098 25.4 12.6 67 438-504 27-97 (185)
339 PF00769 ERM: Ezrin/radixin/mo 33.2 3.3E+02 0.0071 27.6 9.6 49 437-485 77-125 (246)
340 PF03148 Tektin: Tektin family 33.2 5.7E+02 0.012 27.4 11.8 13 413-425 249-261 (384)
341 cd04789 HTH_Cfa Helix-Turn-Hel 33.1 2.9E+02 0.0064 23.9 8.1 26 385-411 36-61 (102)
342 cd01107 HTH_BmrR Helix-Turn-He 33.1 2.1E+02 0.0046 24.9 7.3 67 385-467 37-103 (108)
343 cd01040 globin Globins are hem 32.7 2.2E+02 0.0047 24.2 7.2 44 341-384 24-79 (140)
344 PRK14164 heat shock protein Gr 32.7 61 0.0013 32.7 4.3 27 447-473 82-108 (218)
345 PF05008 V-SNARE: Vesicle tran 32.6 2.2E+02 0.0048 23.1 6.9 59 445-503 2-66 (79)
346 KOG0161 Myosin class II heavy 32.5 6.2E+02 0.014 33.3 13.5 40 463-502 1498-1537(1930)
347 PF10498 IFT57: Intra-flagella 32.5 4.3E+02 0.0094 28.5 10.7 13 357-369 210-222 (359)
348 KOG0980 Actin-binding protein 32.4 1E+03 0.022 29.2 14.7 10 168-177 253-262 (980)
349 PF09403 FadA: Adhesion protei 32.4 3.2E+02 0.007 25.5 8.6 32 473-504 89-120 (126)
350 KOG0612 Rho-associated, coiled 32.2 3.9E+02 0.0084 33.6 11.2 12 413-424 466-477 (1317)
351 PF07200 Mod_r: Modifier of ru 32.2 3.9E+02 0.0085 24.3 9.6 13 386-398 2-14 (150)
352 COG0466 Lon ATP-dependent Lon 31.9 4.4E+02 0.0095 31.5 11.3 18 367-384 129-146 (782)
353 PTZ00046 rifin; Provisional 31.9 1.2E+02 0.0026 32.8 6.5 77 427-503 51-139 (358)
354 KOG4603 TBP-1 interacting prot 31.8 3.2E+02 0.0069 27.4 8.8 29 458-486 118-146 (201)
355 KOG0978 E3 ubiquitin ligase in 31.8 9.4E+02 0.02 28.6 15.8 64 339-402 311-374 (698)
356 PF03962 Mnd1: Mnd1 family; I 31.7 2.3E+02 0.0051 27.6 8.0 34 469-502 134-167 (188)
357 PRK10698 phage shock protein P 31.7 5.3E+02 0.012 25.7 10.9 16 471-486 121-136 (222)
358 TIGR03017 EpsF chain length de 31.6 2.6E+02 0.0057 29.5 8.9 14 411-424 174-187 (444)
359 PF05531 NPV_P10: Nucleopolyhe 31.5 2.9E+02 0.0063 23.9 7.5 43 451-493 23-65 (75)
360 PF13166 AAA_13: AAA domain 31.5 8E+02 0.017 27.7 15.6 44 460-503 428-471 (712)
361 cd04786 HTH_MerR-like_sg7 Heli 31.3 2E+02 0.0044 26.3 7.1 31 386-417 37-67 (131)
362 KOG0500 Cyclic nucleotide-gate 31.3 2.3E+02 0.0049 32.3 8.6 98 383-489 406-505 (536)
363 KOG3850 Predicted membrane pro 31.1 5E+02 0.011 29.0 10.9 50 451-500 311-362 (455)
364 PF09403 FadA: Adhesion protei 31.1 4.4E+02 0.0096 24.6 12.0 24 471-494 94-117 (126)
365 PF09325 Vps5: Vps5 C terminal 31.0 4.8E+02 0.01 24.9 13.5 24 468-491 168-191 (236)
366 TIGR01837 PHA_granule_1 poly(h 31.0 2.4E+02 0.0051 25.6 7.4 16 487-502 99-114 (118)
367 PF01025 GrpE: GrpE; InterPro 31.0 23 0.0005 32.5 1.0 41 439-479 15-55 (165)
368 PF13935 Ead_Ea22: Ead/Ea22-li 30.9 3.2E+02 0.007 25.2 8.4 13 471-483 127-139 (139)
369 KOG2391 Vacuolar sorting prote 30.6 2.2E+02 0.0048 31.0 8.1 33 435-467 235-267 (365)
370 cd07593 BAR_MUG137_fungi The B 30.5 5.6E+02 0.012 25.7 10.5 63 392-467 112-174 (215)
371 PTZ00419 valyl-tRNA synthetase 30.5 1.4E+02 0.0031 35.6 7.5 52 447-498 934-992 (995)
372 PF08580 KAR9: Yeast cortical 30.4 5.9E+02 0.013 29.8 12.1 139 370-513 167-365 (683)
373 KOG3809 Microtubule-binding pr 30.0 8.8E+02 0.019 27.7 21.3 116 338-486 440-576 (583)
374 PF04849 HAP1_N: HAP1 N-termin 29.9 6.6E+02 0.014 26.9 11.4 17 399-415 204-220 (306)
375 PF11727 ISG65-75: Invariant s 29.9 6.1E+02 0.013 26.0 11.0 101 355-468 29-129 (286)
376 PHA03161 hypothetical protein; 29.7 4.2E+02 0.009 25.8 9.0 35 425-460 45-79 (150)
377 KOG3427 Polyglutamine tract-bi 29.6 18 0.00039 36.4 0.1 31 116-146 74-104 (222)
378 PF09728 Taxilin: Myosin-like 29.6 5.1E+02 0.011 27.2 10.5 14 342-355 22-35 (309)
379 COG4420 Predicted membrane pro 29.6 6E+02 0.013 25.6 10.4 45 447-491 132-176 (191)
380 PF06156 DUF972: Protein of un 29.5 2.5E+02 0.0054 25.4 7.2 19 475-493 34-52 (107)
381 COG4345 Uncharacterized protei 29.4 91 0.002 30.8 4.7 66 409-481 106-171 (181)
382 PF06248 Zw10: Centromere/kine 29.1 3E+02 0.0065 30.8 9.3 86 339-427 26-112 (593)
383 PF04102 SlyX: SlyX; InterPro 29.0 2.8E+02 0.0062 22.8 6.9 14 470-483 39-52 (69)
384 KOG0612 Rho-associated, coiled 28.8 5.6E+02 0.012 32.3 11.7 33 449-481 518-550 (1317)
385 KOG3859 Septins (P-loop GTPase 28.8 4.2E+02 0.0091 28.8 9.7 22 387-409 288-309 (406)
386 PRK06569 F0F1 ATP synthase sub 28.6 5.4E+02 0.012 24.8 12.3 8 417-424 35-42 (155)
387 COG1422 Predicted membrane pro 28.6 1.9E+02 0.0041 29.2 6.8 21 361-381 44-64 (201)
388 PF01166 TSC22: TSC-22/dip/bun 28.6 73 0.0016 26.5 3.3 30 463-492 14-43 (59)
389 PF08654 DASH_Dad2: DASH compl 28.4 3E+02 0.0064 24.8 7.4 31 458-488 16-46 (103)
390 COG0419 SbcC ATPase involved i 28.2 1.1E+03 0.023 28.1 15.3 10 412-421 583-592 (908)
391 TIGR03752 conj_TIGR03752 integ 28.1 3.4E+02 0.0074 30.6 9.3 6 388-393 42-47 (472)
392 PF13863 DUF4200: Domain of un 28.1 4.1E+02 0.0089 23.2 11.4 43 448-490 66-108 (126)
393 TIGR01730 RND_mfp RND family e 28.1 4.2E+02 0.0092 26.0 9.2 19 494-512 126-144 (322)
394 KOG2751 Beclin-like protein [S 28.1 9.1E+02 0.02 27.2 15.1 38 365-407 136-173 (447)
395 cd04787 HTH_HMRTR_unk Helix-Tu 28.0 3.6E+02 0.0079 24.3 8.1 25 386-411 37-61 (133)
396 PF07439 DUF1515: Protein of u 28.0 3.8E+02 0.0082 25.0 8.0 12 487-498 50-61 (112)
397 KOG4460 Nuclear pore complex, 27.9 6.7E+02 0.015 29.3 11.5 51 441-491 587-637 (741)
398 cd00890 Prefoldin Prefoldin is 27.8 2.3E+02 0.0049 24.6 6.6 15 391-405 30-44 (129)
399 PF14483 Cut8_M: Cut8 dimerisa 27.8 23 0.0005 26.6 0.3 21 340-360 15-35 (38)
400 cd07617 BAR_Endophilin_B2 The 27.8 6.2E+02 0.013 25.8 10.4 34 385-418 124-157 (220)
401 cd04790 HTH_Cfa-like_unk Helix 27.8 5E+02 0.011 24.8 9.3 30 384-414 36-65 (172)
402 KOG1760 Molecular chaperone Pr 27.7 2.4E+02 0.0051 26.8 6.8 17 391-407 37-53 (131)
403 PF04899 MbeD_MobD: MbeD/MobD 27.6 3.8E+02 0.0083 22.7 9.0 42 462-503 27-68 (70)
404 PF12081 GldM_N: GldM N-termin 27.5 5E+02 0.011 25.0 9.4 61 442-505 15-75 (194)
405 COG0172 SerS Seryl-tRNA synthe 27.3 4.2E+02 0.009 29.5 9.8 25 468-492 73-97 (429)
406 KOG4438 Centromere-associated 27.3 8.1E+02 0.018 27.6 11.8 65 358-428 206-275 (446)
407 PF00435 Spectrin: Spectrin re 27.1 3.1E+02 0.0068 21.5 11.4 30 472-501 75-104 (105)
408 TIGR01000 bacteriocin_acc bact 27.1 7.4E+02 0.016 26.8 11.5 39 474-512 288-326 (457)
409 PF05600 DUF773: Protein of un 27.0 9.4E+02 0.02 27.1 13.0 20 385-404 394-413 (507)
410 KOG2273 Membrane coat complex 26.9 8.6E+02 0.019 26.6 13.8 27 474-500 468-494 (503)
411 PF07851 TMPIT: TMPIT-like pro 26.7 5.5E+02 0.012 27.7 10.2 22 440-461 37-58 (330)
412 PF15463 ECM11: Extracellular 26.7 5E+02 0.011 24.0 8.9 83 370-465 51-138 (139)
413 PF07851 TMPIT: TMPIT-like pro 26.6 4.4E+02 0.0096 28.4 9.5 20 463-482 39-58 (330)
414 PRK13752 putative transcriptio 26.6 2.7E+02 0.0059 25.9 7.2 59 352-414 11-71 (144)
415 PF11559 ADIP: Afadin- and alp 26.5 5E+02 0.011 23.7 15.0 57 442-498 73-129 (151)
416 PRK00578 prfB peptide chain re 26.4 7.2E+02 0.016 27.0 11.2 33 391-424 7-39 (367)
417 TIGR01010 BexC_CtrB_KpsE polys 26.3 7.3E+02 0.016 25.8 11.0 103 385-500 145-265 (362)
418 PF04880 NUDE_C: NUDE protein, 26.3 1.1E+02 0.0023 29.8 4.6 14 411-424 3-16 (166)
419 PF09006 Surfac_D-trimer: Lung 26.3 1.4E+02 0.003 23.8 4.4 26 466-491 2-27 (46)
420 PRK10787 DNA-binding ATP-depen 26.2 2.4E+02 0.0051 33.2 8.1 37 389-425 176-212 (784)
421 PF03904 DUF334: Domain of unk 26.2 7.4E+02 0.016 25.6 10.9 20 402-421 58-77 (230)
422 KOG4643 Uncharacterized coiled 26.2 5.6E+02 0.012 31.8 11.0 35 464-498 524-558 (1195)
423 COG0576 GrpE Molecular chapero 26.2 1.2E+02 0.0027 29.6 5.1 50 464-513 44-93 (193)
424 PF10191 COG7: Golgi complex c 26.1 7.1E+02 0.015 29.3 11.9 50 375-425 45-94 (766)
425 PF10146 zf-C4H2: Zinc finger- 26.0 7.1E+02 0.015 25.3 14.3 37 440-476 65-101 (230)
426 KOG1772 Vacuolar H+-ATPase V1 26.0 5.3E+02 0.012 23.9 10.1 60 431-493 31-95 (108)
427 COG5185 HEC1 Protein involved 26.0 4.8E+02 0.01 29.9 9.9 33 471-503 324-356 (622)
428 TIGR02971 heterocyst_DevB ABC 25.8 7E+02 0.015 25.2 12.0 24 489-512 191-214 (327)
429 TIGR02132 phaR_Bmeg polyhydrox 25.6 5E+02 0.011 26.1 9.0 24 468-491 112-135 (189)
430 COG0172 SerS Seryl-tRNA synthe 25.4 5.1E+02 0.011 28.9 10.0 31 459-489 71-101 (429)
431 PF05622 HOOK: HOOK protein; 25.4 23 0.00051 40.3 0.0 34 468-501 389-422 (713)
432 PF08657 DASH_Spc34: DASH comp 25.4 3.5E+02 0.0075 28.0 8.3 15 370-384 159-174 (259)
433 PF04102 SlyX: SlyX; InterPro 25.3 3.9E+02 0.0084 22.0 7.1 32 444-475 20-51 (69)
434 PF03962 Mnd1: Mnd1 family; I 25.2 6.5E+02 0.014 24.6 11.7 8 304-311 12-19 (188)
435 PLN02943 aminoacyl-tRNA ligase 25.2 1.8E+02 0.004 34.8 7.1 52 447-498 894-952 (958)
436 PF03233 Cauli_AT: Aphid trans 25.2 2.3E+02 0.0051 27.7 6.6 14 364-377 58-71 (163)
437 KOG2991 Splicing regulator [RN 25.1 5.6E+02 0.012 27.3 9.6 80 426-505 106-198 (330)
438 TIGR01144 ATP_synt_b ATP synth 25.0 5.1E+02 0.011 23.3 13.7 30 375-404 10-39 (147)
439 PRK14562 haloacid dehalogenase 24.8 2.8E+02 0.0062 27.3 7.3 42 364-405 109-150 (204)
440 PRK00708 sec-independent trans 24.7 7.5E+02 0.016 25.1 11.1 11 408-418 2-12 (209)
441 PF13874 Nup54: Nucleoporin co 24.7 5.2E+02 0.011 23.9 8.6 22 468-489 70-91 (141)
442 PF06818 Fez1: Fez1; InterPro 24.6 2.9E+02 0.0063 27.9 7.3 58 436-493 2-61 (202)
443 PRK01005 V-type ATP synthase s 24.3 7.2E+02 0.016 24.8 11.6 8 416-423 9-16 (207)
444 PF07820 TraC: TraC-like prote 24.1 1.9E+02 0.0042 26.0 5.4 52 449-503 9-62 (92)
445 KOG2751 Beclin-like protein [S 24.1 6.4E+02 0.014 28.4 10.3 35 454-488 198-232 (447)
446 KOG3647 Predicted coiled-coil 24.1 8.1E+02 0.018 26.3 10.6 97 392-501 102-199 (338)
447 PF13805 Pil1: Eisosome compon 24.1 8.6E+02 0.019 25.6 12.3 46 448-497 147-192 (271)
448 PF14257 DUF4349: Domain of un 24.0 3.2E+02 0.007 27.2 7.6 20 340-359 64-83 (262)
449 KOG1962 B-cell receptor-associ 23.8 7.5E+02 0.016 25.3 10.1 55 447-501 156-210 (216)
450 PRK06664 fliD flagellar hook-a 23.8 4.4E+02 0.0095 30.7 9.5 21 471-491 633-653 (661)
451 PF06120 Phage_HK97_TLTM: Tail 23.8 4.2E+02 0.0092 28.1 8.7 70 426-503 36-107 (301)
452 PRK13169 DNA replication intia 23.7 3.6E+02 0.0078 24.7 7.2 34 463-496 22-55 (110)
453 cd01282 HTH_MerR-like_sg3 Heli 23.7 3.2E+02 0.007 24.0 6.8 30 385-415 35-64 (112)
454 PF15066 CAGE1: Cancer-associa 23.7 1.1E+03 0.025 26.9 12.5 30 362-392 349-378 (527)
455 PRK08475 F0F1 ATP synthase sub 23.7 6.3E+02 0.014 23.9 11.7 13 412-424 42-54 (167)
456 PF11500 Cut12: Spindle pole b 23.7 6.5E+02 0.014 24.4 9.2 12 471-482 120-131 (152)
457 PF15450 DUF4631: Domain of un 23.6 1.2E+03 0.025 27.0 13.8 72 388-461 348-427 (531)
458 COG4467 Regulator of replicati 23.6 2.7E+02 0.0059 25.9 6.3 51 424-481 4-54 (114)
459 cd04776 HTH_GnyR Helix-Turn-He 23.5 1.7E+02 0.0037 26.2 5.1 11 398-408 15-25 (118)
460 PF08826 DMPK_coil: DMPK coile 23.4 4.3E+02 0.0094 21.9 7.6 21 471-491 33-53 (61)
461 PF12795 MscS_porin: Mechanose 23.4 7.3E+02 0.016 24.5 11.7 117 386-502 16-138 (240)
462 PF04012 PspA_IM30: PspA/IM30 23.4 6.8E+02 0.015 24.1 14.6 37 458-494 100-136 (221)
463 PF00170 bZIP_1: bZIP transcri 23.3 3.4E+02 0.0073 21.6 6.2 6 478-483 48-53 (64)
464 PRK14149 heat shock protein Gr 23.2 1.3E+02 0.0027 29.9 4.5 38 442-479 43-80 (191)
465 PF06295 DUF1043: Protein of u 23.1 4E+02 0.0087 24.4 7.5 13 406-418 8-20 (128)
466 PF14643 DUF4455: Domain of un 23.1 1E+03 0.022 26.2 14.2 166 339-506 250-433 (473)
467 cd01106 HTH_TipAL-Mta Helix-Tu 23.0 1.5E+02 0.0032 25.5 4.4 61 353-417 5-67 (103)
468 KOG1961 Vacuolar sorting prote 23.0 9.5E+02 0.021 28.3 11.7 59 438-496 85-143 (683)
469 PRK07090 class II aldolase/add 22.9 92 0.002 31.5 3.6 72 347-418 180-252 (260)
470 TIGR00293 prefoldin, archaeal 22.9 2.8E+02 0.0061 24.5 6.3 35 433-467 84-118 (126)
471 PF00012 HSP70: Hsp70 protein; 22.9 2.8E+02 0.0062 30.2 7.5 95 388-502 504-602 (602)
472 PF04380 BMFP: Membrane fusoge 22.9 4.7E+02 0.01 22.2 7.5 69 410-483 8-77 (79)
473 PF04880 NUDE_C: NUDE protein, 22.9 1.1E+02 0.0024 29.7 4.0 59 410-486 2-60 (166)
474 KOG2002 TPR-containing nuclear 22.7 1.2E+03 0.025 29.0 12.7 132 355-503 742-887 (1018)
475 PRK05014 hscB co-chaperone Hsc 22.7 6.8E+02 0.015 23.9 13.3 134 351-496 32-169 (171)
476 PRK08032 fliD flagellar cappin 22.6 5.5E+02 0.012 28.2 9.7 76 413-493 386-461 (462)
477 PF04799 Fzo_mitofusin: fzo-li 22.6 6.4E+02 0.014 24.9 9.1 65 424-488 105-169 (171)
478 PF03978 Borrelia_REV: Borreli 22.5 5.2E+02 0.011 25.4 8.3 70 409-490 29-101 (160)
479 PF10359 Fmp27_WPPW: RNA pol I 22.5 3.1E+02 0.0066 30.2 7.7 57 441-497 165-227 (475)
480 PRK05729 valS valyl-tRNA synth 22.5 2.3E+02 0.005 33.4 7.2 66 432-497 808-873 (874)
481 smart00338 BRLZ basic region l 22.4 3.7E+02 0.008 21.3 6.3 42 452-493 22-63 (65)
482 PF04871 Uso1_p115_C: Uso1 / p 22.4 6.4E+02 0.014 23.5 11.9 91 413-503 3-103 (136)
483 PF10805 DUF2730: Protein of u 22.4 5.5E+02 0.012 22.8 8.3 61 441-501 34-96 (106)
484 KOG2891 Surface glycoprotein [ 22.4 9.9E+02 0.022 25.9 11.0 84 414-501 361-444 (445)
485 COG5493 Uncharacterized conser 22.4 7.7E+02 0.017 25.4 9.7 89 403-496 12-114 (231)
486 PHA01750 hypothetical protein 22.4 5.1E+02 0.011 22.4 7.8 55 439-502 20-74 (75)
487 PRK09514 zntR zinc-responsive 22.3 5.4E+02 0.012 23.7 8.2 72 386-471 38-113 (140)
488 PLN02281 chlorophyllide a oxyg 22.2 2.9E+02 0.0062 31.6 7.5 57 413-484 105-163 (536)
489 TIGR02231 conserved hypothetic 22.2 9.9E+02 0.021 26.3 11.5 88 418-505 71-173 (525)
490 cd00592 HTH_MerR-like Helix-Tu 22.2 4.7E+02 0.01 21.9 7.5 62 388-461 38-99 (100)
491 PF14712 Snapin_Pallidin: Snap 22.1 4.7E+02 0.01 21.9 8.9 73 410-491 16-92 (92)
492 PF07028 DUF1319: Protein of u 22.0 5.3E+02 0.011 24.4 8.0 66 389-472 18-83 (126)
493 PF08172 CASP_C: CASP C termin 22.0 3.1E+02 0.0066 28.1 7.1 48 441-498 88-135 (248)
494 PF01920 Prefoldin_2: Prefoldi 22.0 2.4E+02 0.0053 23.6 5.5 44 439-482 59-102 (106)
495 TIGR02350 prok_dnaK chaperone 22.0 8.6E+02 0.019 27.1 11.1 86 388-493 498-593 (595)
496 PF13514 AAA_27: AAA domain 22.0 1.1E+03 0.024 28.7 12.7 98 390-493 655-773 (1111)
497 PRK03947 prefoldin subunit alp 21.9 5.9E+02 0.013 23.0 12.2 91 369-485 7-137 (140)
498 PF14772 NYD-SP28: Sperm tail 21.9 5.3E+02 0.011 22.4 7.9 63 413-475 40-103 (104)
499 PF12325 TMF_TATA_bd: TATA ele 21.9 6.4E+02 0.014 23.3 11.2 82 413-497 25-109 (120)
500 PF12761 End3: Actin cytoskele 21.9 6.8E+02 0.015 25.2 9.2 81 411-491 95-195 (195)
No 1
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=100.00 E-value=3.3e-61 Score=474.20 Aligned_cols=216 Identities=50% Similarity=0.738 Sum_probs=210.3
Q ss_pred CCCCCCcccccccccccCC---CCCcccccccccce-EEeccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHH
Q 010298 296 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE 371 (513)
Q Consensus 296 ~~~~eS~~fS~~~i~~~~~---~~D~eE~~SvvsEt-V~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn 371 (513)
+.|++|++||++.|.+|.+ +++++|++|+++|+ |+||||||++||++||++||+||||||+||+++|++||++||+
T Consensus 50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe 129 (269)
T PF05278_consen 50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE 129 (269)
T ss_pred CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence 5678999999999999875 56778999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 010298 372 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL 451 (513)
Q Consensus 372 ~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkEL 451 (513)
+||+||++||++|+++||++||.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|++.++.++..+.||
T Consensus 130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL 209 (269)
T PF05278_consen 130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL 209 (269)
T ss_pred HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 010298 452 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE 511 (513)
Q Consensus 452 Ee~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~ 511 (513)
++++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus 210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~ 269 (269)
T PF05278_consen 210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE 269 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 2
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.65 E-value=9.7e-16 Score=148.87 Aligned_cols=121 Identities=24% Similarity=0.338 Sum_probs=107.6
Q ss_pred ccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcc
Q 010298 332 GKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQID 409 (513)
Q Consensus 332 nGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dLe~aGfK 409 (513)
|||+|+++|++++..||++||++|+.|+.+++++|..||+.|+++|++++ +++ +.++..++.+|..++.+++.+||+
T Consensus 156 ~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 234 (297)
T KOG1987|consen 156 NGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFK 234 (297)
T ss_pred ceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999 778 999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
||||.++++++.+.++ .+...+...+++++++..+..+......
T Consensus 235 ld~l~~~~~~~~~k~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (297)
T KOG1987|consen 235 LDWLEKKLNEVKEKKK--------------KDLWYEIRLQELEEELKSLKDKCSDLEG 278 (297)
T ss_pred HhHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9999999999998873 1345555666667777777766665554
No 3
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=98.04 E-value=0.00028 Score=68.03 Aligned_cols=127 Identities=20% Similarity=0.346 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 010298 368 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST 447 (513)
Q Consensus 368 ~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~ 447 (513)
..|=+..+|++...+.-+.+ +.+.+..-..+|.+|+.-||+|.-|+.||+++...+. .+..+.+..+..+..++..
T Consensus 47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888444 8999999999999999999999999999999887663 3333333333333333332
Q ss_pred ---HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 448 ---KKELESQMNELALKEKEVAG----LKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 448 ---kkELEe~leeL~qKekev~d----~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
.+++|+.+.+|.++--++.+ +...-++....+.+|+-+-..|.+.+.+++.
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334443333333333333 1112223334455555555555555555544
No 4
>PRK11637 AmiB activator; Provisional
Probab=92.80 E-value=4.7 Score=42.75 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHhhh
Q 010298 413 LRNILNEISEAIE-FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK----EVAGLKESVAKTKARLSDLELESN 487 (513)
Q Consensus 413 LekKLeEV~Eare-~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKek----ev~d~~erv~e~k~RL~~LE~ess 487 (513)
-...|+++...++ +....+.++.++.. ++....+++.+..+|....+ .+..++..+.+....|.+|+....
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~----l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQ----QKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666655553 22222333333322 22333344444444433333 355566666666777777777777
Q ss_pred hHHHHHHHhhhhh
Q 010298 488 RLEQIIQATQSKV 500 (513)
Q Consensus 488 ~L~k~v~~~kSKV 500 (513)
+|.+.|..++-..
T Consensus 244 ~L~~~I~~l~~~~ 256 (428)
T PRK11637 244 RLRDSIARAEREA 256 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776655433
No 5
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.79 E-value=7.9 Score=40.41 Aligned_cols=64 Identities=19% Similarity=0.370 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 010298 445 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 508 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl 508 (513)
..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3345556666666666666666666666666666666666666666666666666666666554
No 6
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.43 E-value=8.6 Score=39.76 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~ess~ 488 (513)
|.+.+.++..+..+|++..++..++..+-..
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444433333333
No 7
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.20 E-value=1.5 Score=44.57 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..+|.--+.+++-+.+.+.
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3344445555666666666666667777777777777666666555555665555543
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.01 E-value=9.2 Score=41.13 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
...+..+...+..|++...++...+.++..+..++.+...+|.+|+.+..++
T Consensus 340 ~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 340 LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444443
No 9
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.99 E-value=7.4 Score=47.62 Aligned_cols=51 Identities=4% Similarity=0.114 Sum_probs=42.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA 436 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~e 436 (513)
-.+++.+|..+...+..|++..=+|+=|+.+++.+.+....++.|......
T Consensus 215 ~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~ 265 (1353)
T TIGR02680 215 PPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR 265 (1353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999998988888888877777766664333
No 10
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.93 E-value=6.1 Score=36.64 Aligned_cols=37 Identities=14% Similarity=0.411 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 469 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 469 ~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
++.+.++++-+.++..+...+...|..|..|+...++
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777777777777777777777776654
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.18 E-value=21 Score=41.01 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=10.2
Q ss_pred EEeccEEeecchHHHHHHHHhHcc
Q 010298 329 VSVGKYHVRASISSILQSIISRYG 352 (513)
Q Consensus 329 V~VnGFqVl~Sqv~iV~~IFeKHP 352 (513)
..+||..+.. . -|..+|...|
T Consensus 112 ~~~~~~~~~~--~-~~~~~l~~~~ 132 (1179)
T TIGR02168 112 YFINGQPCRL--K-DIQDLFLDTG 132 (1179)
T ss_pred eeECCCcccH--H-HHHHHHhccC
Confidence 4567755522 2 2455555543
No 12
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.36 E-value=8.7 Score=35.63 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 415 NILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 415 kKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
+.|+.|.++.. ..|+-+..++..+..+|+++.+=..+-.++|.+++.-+..+..-+..++.....|+-.|.
T Consensus 50 kql~~vs~~l~---------~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 50 KQLEQVSESLS---------STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776666553 222223445555555555555555555555555556666666666666655555555555
Q ss_pred Hhhh
Q 010298 495 ATQS 498 (513)
Q Consensus 495 ~~kS 498 (513)
.+..
T Consensus 121 ~ie~ 124 (126)
T PF07889_consen 121 EIEE 124 (126)
T ss_pred HHhc
Confidence 5443
No 13
>PRK11637 AmiB activator; Provisional
Probab=87.32 E-value=26 Score=37.35 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 010298 365 MRAYYLECLCSVVQ 378 (513)
Q Consensus 365 lRs~YMn~Ll~LIe 378 (513)
+|-..+-+|+.++-
T Consensus 20 ~~~~~~~~ll~~~~ 33 (428)
T PRK11637 20 IRPILYASVLSAGV 33 (428)
T ss_pred hhhHHHHHHHHHHH
Confidence 34444444444333
No 14
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=87.28 E-value=5.3 Score=38.59 Aligned_cols=134 Identities=12% Similarity=0.163 Sum_probs=69.8
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH-HHHHHHHhhhhh
Q 010298 352 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN-EISEAIEFSTQH 430 (513)
Q Consensus 352 PDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe-EV~Eare~~~~~ 430 (513)
+++|.-+.+....+|.+|=.-++. +..-. +--..++++|| .....+..+..+|+.+.=++...- ++..+.=.....
T Consensus 4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~-~G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~ 80 (175)
T PRK13182 4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNE-YGHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQ 80 (175)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCC-CCcCC-CCCEEECHHHH-HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCC
Confidence 345566666666777766555543 11111 12477899999 789999999999999876654221 110000000011
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHhhhhHHHH
Q 010298 431 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG---------LKESVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 431 ~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d---------~~erv~e~k~RL~~LE~ess~L~k~ 492 (513)
.++.+. -.+++...+.|++.+++|.+.....+| -|..++||..+|..||....++++.
T Consensus 81 ~t~~~R----~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 81 NISSVD----FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred ccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111 122333333344444444433333333 1556677777777777776666553
No 15
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.20 E-value=6.3 Score=40.94 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=67.5
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 426 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 426 ~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
|.+++.....--.++-.+....++||+.|-+.+...|++...|+.+...+-.-|..+-.+...+.+-+..++-|+++..+
T Consensus 221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455568888899999999999999999999999999999999999999999999999999999887643
No 16
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.99 E-value=12 Score=36.49 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=8.2
Q ss_pred cchhhhhhHHHHHHH
Q 010298 408 IDVDWLRNILNEISE 422 (513)
Q Consensus 408 fKVDWLekKLeEV~E 422 (513)
...+=|+.+++++.+
T Consensus 34 ~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 34 EENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555566666555
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=86.68 E-value=21 Score=41.28 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=24.8
Q ss_pred EEeccEEeecchHHHHHHHHhHccccc-----------ccCcccchhHHHHHHHHHHHHHHH
Q 010298 329 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQE 379 (513)
Q Consensus 329 V~VnGFqVl~Sqv~iV~~IFeKHPDIA-----------snf~lKs~~lRs~YMn~Ll~LIet 379 (513)
..+||-.|. ..-+..+|...|=.. ..|...++.-|..|++-+.++...
T Consensus 110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~ 168 (1164)
T TIGR02169 110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEF 168 (1164)
T ss_pred EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHH
Confidence 567775552 344566665544111 122333555566667776664433
No 18
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.57 E-value=22 Score=44.44 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=74.0
Q ss_pred EeecchHHHHHHHHhH-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhh
Q 010298 335 HVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 413 (513)
Q Consensus 335 qVl~Sqv~iV~~IFeK-HPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWL 413 (513)
+|-.+.-.+.+++|.. -..+|++| ++++.=|-..++-.+++=+.+...- ..|..+...|..|. -.+.=|
T Consensus 250 ~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~------kkLe~tE~nL~rI~---diL~EL 319 (1486)
T PRK04863 250 RVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR------RQLAAEQYRLVEMA---RELAEL 319 (1486)
T ss_pred HhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHHHH
Confidence 4445556666666654 35677788 6666666666666655544433332 22222222222222 112333
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010298 414 RNILNEISEAIEFSTQHQTIDAA-------KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 414 ekKLeEV~Eare~~~~~~~le~e-------Kd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~es 486 (513)
..+|..+....+-+.+|..+..+ .......++++..++++..+.|...+.++.+..+++.++.+++.+|+.+.
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444444444333 11222333333444444444455554555555555555555555555444
Q ss_pred hhHHHHHHHhhhhhh
Q 010298 487 NRLEQIIQATQSKVT 501 (513)
Q Consensus 487 s~L~k~v~~~kSKV~ 501 (513)
.++.+.+..++.++.
T Consensus 400 aelqqel~elQ~el~ 414 (1486)
T PRK04863 400 ADYQQALDVQQTRAI 414 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 19
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.24 E-value=10 Score=39.71 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=46.9
Q ss_pred hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 414 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 414 ekKLeEV~Ear-e~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
+..|.||-|.. +-+-..++|+.+|.++.-.+..++.+|+++-+.|+++.++..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e 137 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788887764 5667789999999999999999999999999999999999866
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=85.96 E-value=18 Score=41.44 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=7.5
Q ss_pred chhhhhhHHHHHHHHHH
Q 010298 409 DVDWLRNILNEISEAIE 425 (513)
Q Consensus 409 KVDWLekKLeEV~Eare 425 (513)
.++=|+.+++.+....+
T Consensus 490 ~l~~~~~~~e~l~~~~~ 506 (880)
T PRK02224 490 EVEEVEERLERAEDLVE 506 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445554444433
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.26 E-value=33 Score=32.17 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
..+...+...+...+++...++++.+.+.++.+.+..+.++......+.+.+.+.++
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555566667777777777776666666666655544
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=85.15 E-value=16 Score=42.22 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=9.5
Q ss_pred HHhHHHhcCcchhhhhhHHHHHH
Q 010298 399 VLKDVESAQIDVDWLRNILNEIS 421 (513)
Q Consensus 399 ~L~dLe~aGfKVDWLekKLeEV~ 421 (513)
.+..++...=++.+++.++.++.
T Consensus 320 ~l~~~e~~~~~~e~~~~~~~e~~ 342 (895)
T PRK01156 320 EINKYHAIIKKLSVLQKDYNDYI 342 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444443
No 23
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=85.08 E-value=30 Score=32.59 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcC---cchhhhhhHH
Q 010298 362 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ---IDVDWLRNIL 417 (513)
Q Consensus 362 s~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aG---fKVDWLekKL 417 (513)
--..|++|-++.+-||+.|...- .++... |......+.++.... ++-+||+.-|
T Consensus 48 ~dsiK~y~~~vh~pll~~~~~~~-~~~~~~-l~~~~~~~~~vd~~~~a~i~e~~L~~el 104 (204)
T PF04740_consen 48 YDSIKNYFSEVHIPLLQGLILLL-EEYQEA-LKFIKDFQSEVDSSSNAIIDEDFLESEL 104 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHhHHHHHHHHcccccccccHHHHHHHH
Confidence 34677788787777777776554 333333 355555555565433 8888888444
No 24
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.98 E-value=9.2 Score=44.09 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 474 KTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
+|+..|.++.+....|..+|..+|-|++
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555554444
No 25
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.56 E-value=17 Score=31.35 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=9.0
Q ss_pred chhhhhhHHHHHHHHH
Q 010298 409 DVDWLRNILNEISEAI 424 (513)
Q Consensus 409 KVDWLekKLeEV~Ear 424 (513)
++.|++.-.+.|.+..
T Consensus 3 Dik~ir~n~e~v~~~l 18 (108)
T PF02403_consen 3 DIKLIRENPEEVRENL 18 (108)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHH
Confidence 4456666666665444
No 26
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.51 E-value=5.4 Score=40.78 Aligned_cols=8 Identities=50% Similarity=0.734 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010298 476 KARLSDLE 483 (513)
Q Consensus 476 k~RL~~LE 483 (513)
+.|+.+|+
T Consensus 197 ~~r~~ELe 204 (290)
T COG4026 197 KKRWDELE 204 (290)
T ss_pred HHHHHHhc
Confidence 33333333
No 27
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.36 E-value=33 Score=35.97 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k 491 (513)
..+.....+++.+..+|.++++++.+...+|++..++..++..+-..+++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566666666666666666666666666666655555555544
No 28
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=84.03 E-value=15 Score=32.81 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=21.6
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
+-.+.++|..+..+.. |++.||-|+=.+.-|+
T Consensus 35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l~ 66 (118)
T cd04776 35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELLD 66 (118)
T ss_pred cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHHH
Confidence 5667777776655544 8889998765555444
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.81 E-value=24 Score=36.04 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 010298 471 SVAKTKARLSDLELESNRL 489 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L 489 (513)
.+.+.+++|.+++.....+
T Consensus 125 ~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 125 EIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 30
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.79 E-value=46 Score=32.63 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHH
Q 010298 363 NSMRAYYLECLCS 375 (513)
Q Consensus 363 ~~lRs~YMn~Ll~ 375 (513)
..++.||=++..+
T Consensus 12 ~~iK~YYndIT~~ 24 (201)
T PF13851_consen 12 QEIKNYYNDITLN 24 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 5688899777644
No 31
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.18 E-value=21 Score=34.93 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=10.8
Q ss_pred hHHHhcCcchhhhhhHHHHHHHHH
Q 010298 401 KDVESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 401 ~dLe~aGfKVDWLekKLeEV~Ear 424 (513)
.++.....++.+|+.+++++....
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i 86 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRI 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455544444444333
No 32
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.06 E-value=16 Score=42.15 Aligned_cols=150 Identities=17% Similarity=0.270 Sum_probs=77.0
Q ss_pred eecchHHHHHHHHhHccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhHHHhcCc
Q 010298 336 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI 408 (513)
Q Consensus 336 Vl~Sqv~iV~~IFeKHPD--IA---snf~lKs~~lRs~YMn~Ll~LIetL~kspl--~eLS~~dL~ea~~~L~dLe~aGf 408 (513)
..+++...++.||.+-.. |. ++ +..++.- .-.+++|..-++.|..--+ +++-..+|..-...|....+.++
T Consensus 501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~-~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql 578 (717)
T PF10168_consen 501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSP-QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL 578 (717)
T ss_pred ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888999999986421 22 22 1222222 2245667777777764322 23444555555556665554332
Q ss_pred -chhhhhhHHHHHHH-HHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHH
Q 010298 409 -DVDWLRNILNEISE-AIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG----LKESVAKTKARLSDL 482 (513)
Q Consensus 409 -KVDWLekKLeEV~E-are~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d----~~erv~e~k~RL~~L 482 (513)
+|+=|+.+.+.|.+ +.++.+++..+.++.+.+.++++.+.+.+...+-.|+..|+++++ ++.++..++.+|.++
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333322 224455566666666666666666666665555556666655555 233444444444444
Q ss_pred HHhhh
Q 010298 483 ELESN 487 (513)
Q Consensus 483 E~ess 487 (513)
.++..
T Consensus 659 k~k~~ 663 (717)
T PF10168_consen 659 KKKLD 663 (717)
T ss_pred HHHHH
Confidence 44333
No 33
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=82.70 E-value=49 Score=35.06 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=79.5
Q ss_pred hHHHHHHHHhHccccc--ccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 010298 340 ISSILQSIISRYGDIA--ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 417 (513)
Q Consensus 340 qv~iV~~IFeKHPDIA--snf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKL 417 (513)
....|+.|++=-=+|- +++++.++.||. |+..|..+..++..-| ++..|+..+..|...-|.+ ...++
T Consensus 138 d~~~v~eVI~~RN~~MHS~emkvs~~wm~~-~~~~i~nll~~f~~ip-------e~~~a~~~Ie~ll~~d~~v--~~~~~ 207 (307)
T PF15112_consen 138 DRKKVREVIKCRNEIMHSSEMKVSSQWMRD-FQMKIQNLLNEFRNIP-------EIVAAGSRIEQLLTSDWAV--HIPEE 207 (307)
T ss_pred cHHHHHHHHHHHHHhhcCcccccCHHHHHH-HHHHHHHHHHHhccCh-------HHHHHHHHHHHHHhhhhhh--cCchh
Confidence 7778888887666663 556666777775 7788888888877777 6777777777776443332 12333
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010298 418 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE-----------------SQMNELALKEKEVAGLKESVAKTKARLS 480 (513)
Q Consensus 418 eEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELE-----------------e~leeL~qKekev~d~~erv~e~k~RL~ 480 (513)
++.....-..+-+ .+....++..++.++..|+ ..++-+..-...=+|+++.+.+--..|.
T Consensus 208 d~~Dg~~~~~~~~---~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~ 284 (307)
T PF15112_consen 208 DQRDGCESETDVY---LSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLD 284 (307)
T ss_pred hccchhhhccchh---hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 3333222111100 0011111222222222211 1222333333334455555554446666
Q ss_pred HHHHhhhhHHHHHHHhhhhhhh
Q 010298 481 DLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 481 ~LE~ess~L~k~v~~~kSKV~k 502 (513)
.|+.+..+++.-|+.++++|.+
T Consensus 285 ~l~~k~~~~~~~v~~~~~~~~q 306 (307)
T PF15112_consen 285 SLQTKHQKLESDVKELKSQMPQ 306 (307)
T ss_pred HHHHHhcchhhhhhHHHhhccC
Confidence 6666666666666666666654
No 34
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.48 E-value=8.6 Score=41.17 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
++++++....+..++++|++-+++++.-..++.+++++ ||-+...|.+.++-|++||+.
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence 34444444445555667777777777655554444444 455666666677777777765
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=82.47 E-value=22 Score=40.70 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=16.8
Q ss_pred HHHHHhHcccccccCcccchhHHHHHHHHHHHH
Q 010298 344 LQSIISRYGDIAANCNLESNSMRAYYLECLCSV 376 (513)
Q Consensus 344 V~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~L 376 (513)
.+.||-..|+|..=+ -.++.=|...+.=|++|
T Consensus 130 ~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 130 VNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL 161 (880)
T ss_pred cceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence 444455566654433 33555555556666654
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.26 E-value=36 Score=33.71 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.3
Q ss_pred chhhhhhHH
Q 010298 409 DVDWLRNIL 417 (513)
Q Consensus 409 KVDWLekKL 417 (513)
+|.-++..|
T Consensus 121 kl~~~E~~L 129 (237)
T PF00261_consen 121 KLKVLEQEL 129 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 37
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=81.77 E-value=27 Score=38.89 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 010298 358 CNLESNSMRAYYLECLCSVVQELQSTSLMQMT 389 (513)
Q Consensus 358 f~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS 389 (513)
..+.|+.+|+.+|+=|+.|--.|.+-- .+++
T Consensus 345 tlLe~~~~R~~fldeL~EL~aFL~qRl-~El~ 375 (507)
T PF05600_consen 345 TLLENPETRNQFLDELLELEAFLKQRL-YELS 375 (507)
T ss_pred hhcCCHhHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 568899999999999999977776644 5665
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.26 E-value=55 Score=33.98 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010298 447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 507 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS 507 (513)
++++|.+.-.++..+.+++.+.+.++.++.+.+..+..+...+...|..+...+++=.+.+
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t 274 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWT 274 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555555555555555566666666666666666666666666666666665555444433
No 39
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=81.22 E-value=11 Score=34.33 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=24.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010298 449 KELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 449 kELEe~leeL~-qKekev~d~~erv~e~k~RL~~LE~es 486 (513)
+.|+.++.++. ..+++|.+.++||.+.+.++..||.+.
T Consensus 68 r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 68 RKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555554444 334566777788888888888887664
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=81.12 E-value=38 Score=40.87 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=57.7
Q ss_pred EEeccEEeecchHHHHHHHHhH------------cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHH
Q 010298 329 VSVGKYHVRASISSILQSIISR------------YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEM 396 (513)
Q Consensus 329 V~VnGFqVl~Sqv~iV~~IFeK------------HPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea 396 (513)
..|||-.|..+ -+..+|.. -|+|..=...+....|. |++=..++...-.. -+.=....
T Consensus 112 Y~INg~~~~~~---dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~-iiEEaaGv~~y~~r------~~ea~~~L 181 (1163)
T COG1196 112 YYINGEKVRLK---DIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRK-LIEEAAGVSKYKER------KEEAERKL 181 (1163)
T ss_pred EEECCcEeeHH---HHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHH-HHHHHhchHHHHHH------HHHHHHHH
Confidence 67777777766 23333332 24444444455555555 66666665543221 11222222
Q ss_pred HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHh
Q 010298 397 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKAN 439 (513)
Q Consensus 397 ~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~ 439 (513)
..+..-|......++=|+++|+.+...++.+..|++++.++..
T Consensus 182 ~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~ 224 (1163)
T COG1196 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE 224 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444466678888888888888888888888887653
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.05 E-value=17 Score=43.74 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
.-++.+++++|...+.++++.++..++++.+.++.+++...+.+...|.+.+.+..
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344433333333334444444444555555555555555555555554444
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.82 E-value=24 Score=39.82 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 010298 472 VAKTKARLSDLELESNR 488 (513)
Q Consensus 472 v~e~k~RL~~LE~ess~ 488 (513)
.+++..|+.+||.....
T Consensus 215 ~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.37 E-value=31 Score=43.10 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010298 447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~ 488 (513)
.+.++++...++...++++.+++.++.+....+..++.+...
T Consensus 374 leeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q 415 (1486)
T PRK04863 374 ADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQ 415 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444333333333333333333333
No 44
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.14 E-value=22 Score=39.30 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=55.7
Q ss_pred eEEeccEEeecchH-HHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH---
Q 010298 328 SVSVGKYHVRASIS-SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV--- 403 (513)
Q Consensus 328 tV~VnGFqVl~Sqv-~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL--- 403 (513)
...|||-.|..+.+ .+.+.++.-||.... ..+-++..+-.+|+-+.++.+.+... +.+ -.++.++...|..+
T Consensus 108 ~~~iNg~~v~~~~l~~l~~~li~i~gQ~~~-~~l~~~~~~~~lLD~~~~~~~~~~~~--~~~-~~~~~~~~~~L~~l~~~ 183 (563)
T TIGR00634 108 RAYLNGKPVSASSLLEFTSELLDLHGQHDQ-QLLFRPDEQRQLLDTFAGANEKVKAY--REL-YQAWLKARQQLKDRQQK 183 (563)
T ss_pred EEEECCEEccHHHHHHHhcCeEEEECchHH-HHhcCHHHHHHHHHHhcCchHHHHHH--HHH-HHHHHHHHHHHHHHHhh
Confidence 47899988866554 333334555888864 44557777777888777743322222 222 45555555555555
Q ss_pred -HhcCcchhhhhhHHHHHHHHH
Q 010298 404 -ESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 404 -e~aGfKVDWLekKLeEV~Ear 424 (513)
+...=+++||+-.|+||..+.
T Consensus 184 ~~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 184 EQELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHhCC
Confidence 334556778888877776444
No 45
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.08 E-value=38 Score=34.68 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010298 473 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 473 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
.+...+|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence 3445556666666666666677777777777777777775
No 46
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=79.91 E-value=2.5 Score=44.65 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 506 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~k 506 (513)
.+.++.+||.++.+|+.+++.....+.+.+..+..|++.+.+.
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555555555555666666655443
No 47
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.81 E-value=41 Score=34.37 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010298 445 ESTKKELESQMNELALKEKEVAGLKESVAKTKA 477 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~ 477 (513)
.++..+|..-++++..+++++.+.++++..++.
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444433
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.68 E-value=73 Score=36.40 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=33.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 433 IDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT---KARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 433 le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~---k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
++.++...+..++.++.|+++..+|+...+++..+++.+|+-- -+-..++-.++.+|.+.|..++++.+..
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555544444311 1122233344455555555555555443
No 49
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.52 E-value=55 Score=30.70 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 010298 470 ESVAKTKARLSDLE 483 (513)
Q Consensus 470 erv~e~k~RL~~LE 483 (513)
..+.++...+.+++
T Consensus 165 ~~~~~~~~~~~~l~ 178 (191)
T PF04156_consen 165 SQLERLQENLQQLE 178 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.05 E-value=52 Score=30.73 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
+...+.-+...|+..+..++..+.-+..|.
T Consensus 109 ~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444455555555555554444443
No 51
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.67 E-value=44 Score=37.62 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=10.8
Q ss_pred HHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 481 DLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 481 ~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
+|+.+...+...+...+..+.+|.
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444
No 52
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=78.28 E-value=18 Score=39.03 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 010298 467 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 506 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~k 506 (513)
+++++..+++++|.+||.+...++..+..+-.++=++...
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4555666777777777777777777666666666555443
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=78.03 E-value=32 Score=34.03 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 010298 476 KARLSDLEL 484 (513)
Q Consensus 476 k~RL~~LE~ 484 (513)
..++.+|+.
T Consensus 140 E~ki~eLE~ 148 (237)
T PF00261_consen 140 ESKIKELEE 148 (237)
T ss_dssp HHHHHHHHH
T ss_pred chhHHHHHH
Confidence 333333333
No 54
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.37 E-value=76 Score=31.14 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 010298 469 KESVAKTKARLSDLELES 486 (513)
Q Consensus 469 ~erv~e~k~RL~~LE~es 486 (513)
+..+..+.+.+..+|.+.
T Consensus 165 ks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 165 KSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 55
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.97 E-value=38 Score=34.20 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 414 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 414 ekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
++--++...+++....+..++++.+......+.++.|+++.-.+|...++++...+.+.++...--.+|-++.++|
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3334444444444444444555555545555556667777766777666666666666666655555555555555
No 56
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=76.92 E-value=64 Score=37.22 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.2
Q ss_pred chhhhhhHHH
Q 010298 409 DVDWLRNILN 418 (513)
Q Consensus 409 KVDWLekKLe 418 (513)
.++.|+..+.
T Consensus 825 ~~~~l~~~~~ 834 (1179)
T TIGR02168 825 RLESLERRIA 834 (1179)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 57
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.76 E-value=40 Score=30.51 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=35.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
.+...++.+|++-+..++..||.....|.+.+..+..+++...
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556779999999999999999999999999999888764
No 58
>PRK14148 heat shock protein GrpE; Provisional
Probab=76.64 E-value=4.8 Score=39.65 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
+...+.++.++++++.++++++.++..+...+.+++.-=+....+|....|+.+||
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LL 97 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELL 97 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555556667778889999999999999888888888888888888888776
No 59
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=76.33 E-value=27 Score=42.96 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHH
Q 010298 413 LRNILNEISEAIEFSTQHQTIDAAK 437 (513)
Q Consensus 413 LekKLeEV~Eare~~~~~~~le~eK 437 (513)
|++|+++|-++-+|.+.-..++..+
T Consensus 170 LKkkfD~IF~~tky~KAld~~kk~r 194 (1294)
T KOG0962|consen 170 LKKKFDDIFSATKYTKALDSLKKLR 194 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555444444443
No 60
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=76.23 E-value=17 Score=36.40 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=51.1
Q ss_pred chHHHHHHHHhHcccccc-cCc-ccchhH------------------------HHHHHHHHHHHHHHHhcchhhhccHHH
Q 010298 339 SISSILQSIISRYGDIAA-NCN-LESNSM------------------------RAYYLECLCSVVQELQSTSLMQMTKAK 392 (513)
Q Consensus 339 Sqv~iV~~IFeKHPDIAs-nf~-lKs~~l------------------------Rs~YMn~Ll~LIetL~kspl~eLS~~d 392 (513)
.-++.|+++|+-|||+-- .|. .-.|.+ --+|+.-|+++|=+|..--+..|.+.+
T Consensus 57 ~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~ 136 (204)
T COG2178 57 EAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGS 136 (204)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346778888888888754 222 212222 236999999999999999999999999
Q ss_pred HHHHHHHHhHHHh
Q 010298 393 VKEMMAVLKDVES 405 (513)
Q Consensus 393 L~ea~~~L~dLe~ 405 (513)
+.+|...+..|++
T Consensus 137 ~~~Ae~~~~~ME~ 149 (204)
T COG2178 137 FEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
No 61
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.62 E-value=19 Score=39.52 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
.++|.+.-+++++.++++++.+..+..+...|.+.++...++++.|.++
T Consensus 51 ~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 51 EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3333333333333333333333333334444444444444443333333
No 62
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=75.60 E-value=91 Score=31.14 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=7.0
Q ss_pred hhccHHHHHHHHH
Q 010298 386 MQMTKAKVKEMMA 398 (513)
Q Consensus 386 ~eLS~~dL~ea~~ 398 (513)
..++..+|..+..
T Consensus 118 ~~~~~~~l~~~l~ 130 (264)
T PF06008_consen 118 DQLPSEDLQRALA 130 (264)
T ss_pred CCCCHHHHHHHHH
Confidence 3566666655443
No 63
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=74.90 E-value=50 Score=27.82 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 470 ESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 470 erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
.+...+.+.+..|+.....|...+.++..-+..
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566677777777777777777777666554
No 64
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.15 E-value=1.5e+02 Score=33.12 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhc-chhhhccHHHHHHHHHHHhHHHhcCcchhhh--hhHHHHHHHHH
Q 010298 368 YYLECLCSVVQELQS-TSLMQMTKAKVKEMMAVLKDVESAQIDVDWL--RNILNEISEAI 424 (513)
Q Consensus 368 ~YMn~Ll~LIetL~k-spl~eLS~~dL~ea~~~L~dLe~aGfKVDWL--ekKLeEV~Ear 424 (513)
.+|+-|=.|+.+|+. .| +.|.+......+|+..||.++=+ .+.|..+.+..
T Consensus 212 ~~~~~iP~l~~~~~~~~P------~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i 265 (569)
T PRK04778 212 QIMEEIPELLKELQTELP------DQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQI 265 (569)
T ss_pred HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Confidence 344555555555554 33 67777788888888899888864 66666665544
No 65
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.07 E-value=76 Score=38.48 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh-----hHHHHHHHHHHh
Q 010298 365 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR-----NILNEISEAIEF 426 (513)
Q Consensus 365 lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLe-----kKLeEV~Eare~ 426 (513)
..+.+++.|-..|+.|-+.- +.+.+-...+..++-.+-+.-|++ .+++++.++++.
T Consensus 199 ~~~~~l~~L~~~~~~l~kdV------E~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 199 TKTEKLNRLEDEIDKLEKDV------ERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 34455666666555554433 344555555555655555555553 345555555543
No 66
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.82 E-value=73 Score=29.18 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 010298 367 AYYLECLCSVVQEL 380 (513)
Q Consensus 367 s~YMn~Ll~LIetL 380 (513)
..-+|+|-+||..-
T Consensus 34 ~~vin~i~~Ll~~~ 47 (151)
T PF11559_consen 34 VRVINCIYDLLQQR 47 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555433
No 67
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.58 E-value=21 Score=42.91 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHh
Q 010298 410 VDWLRNILNEISEAIEFSTQHQTIDAAKAN 439 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~~~le~eKd~ 439 (513)
|.+|+.||-++-+.++=+.+|+.++..+..
T Consensus 193 l~yieerLreLEeEKeeL~~Yqkldk~rr~ 222 (1200)
T KOG0964|consen 193 LKYIEERLRELEEEKEELEKYQKLDKERRS 222 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHhh
Confidence 467788999999999989999999888753
No 68
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.00 E-value=37 Score=33.93 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 506 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~----~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~k 506 (513)
+..+...++|+++|..++|+-..+.+- +.--++.++|=.+|..+..-|.+.+..++-.+.+|..+
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667889999999988888777762 22233567777789999988888899999999888654
No 69
>PRK14161 heat shock protein GrpE; Provisional
Probab=72.74 E-value=10 Score=36.82 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=35.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
+.+++++++++.++++++.++..+...+.++..--+....+|...+|+.+||
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LL 76 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELL 76 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445556666777777777777777777777777777777777766664
No 70
>PRK14140 heat shock protein GrpE; Provisional
Probab=72.51 E-value=7.1 Score=38.38 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 456 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 456 eeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
+.|.+.+.++.++++++.+++++|.++..+...+.++...=+....+|...+|+..||
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LL 94 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLL 94 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666677777888888888888888777777777777777777776664
No 71
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=72.44 E-value=67 Score=34.30 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=7.4
Q ss_pred cccccCcccchh
Q 010298 353 DIAANCNLESNS 364 (513)
Q Consensus 353 DIAsnf~lKs~~ 364 (513)
|++++.+...|.
T Consensus 241 D~vAd~ra~TPt 252 (438)
T PRK00286 241 DFVADLRAPTPT 252 (438)
T ss_pred HHhhhccCCChH
Confidence 566666666664
No 72
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=71.99 E-value=15 Score=37.27 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=21.4
Q ss_pred EeecchHHHHHHHHhHccccccc----CcccchhHHHHHHHH
Q 010298 335 HVRASISSILQSIISRYGDIAAN----CNLESNSMRAYYLEC 372 (513)
Q Consensus 335 qVl~Sqv~iV~~IFeKHPDIAsn----f~lKs~~lRs~YMn~ 372 (513)
.|.+.....|..||-+-||.... +++.+..+.+.+...
T Consensus 45 ~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~~~~~l~~~ 86 (331)
T PRK03598 45 NLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAPYENALMQA 86 (331)
T ss_pred EeecccCcEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHH
Confidence 44444455566666677766433 566666666554433
No 73
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.98 E-value=46 Score=34.65 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 443 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 443 ~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
.++....+|.+.-++++.....+.+++.|+.+++..-.+|..-..-+...|..+..
T Consensus 208 ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 208 ELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444445555555555555666666666666666655555555544443
No 74
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.75 E-value=69 Score=32.18 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=22.2
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010298 431 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAK 474 (513)
Q Consensus 431 ~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e 474 (513)
+.++.+.++....++.++.++++........+.++..++..+.+
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 44445555555555555555555554444444444444444433
No 75
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.62 E-value=1.3e+02 Score=37.63 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=67.3
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010298 387 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT-IDAAKANCVNLLESTKKELESQMNELALKEKEV 465 (513)
Q Consensus 387 eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~-le~eKd~~e~~~e~~kkELEe~leeL~qKekev 465 (513)
.-|..|+..|.+.+.+-+.|.=+-+=++...++|.|+-+.+++.+. ++.+-...+..++...+-|.+-.++++-.|+.+
T Consensus 1535 ~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~ 1614 (1758)
T KOG0994|consen 1535 SRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLA 1614 (1758)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788999999999999999999999999999999876665433 111112223334444555555555666666666
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 010298 466 AGLKESVAKTKARLSDLELESN 487 (513)
Q Consensus 466 ~d~~erv~e~k~RL~~LE~ess 487 (513)
..+.+|+.++..++.+|+.+..
T Consensus 1615 ~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1615 TSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777766665443
No 76
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.44 E-value=1.2e+02 Score=37.54 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=27.9
Q ss_pred cccccccccccCCCCcccc--ccCCCCcccccccccCCCCCCCCCCcccccccccc
Q 010298 132 HECGEHCFKRNGEANARGV--NKESGSWSFGRKNKASDSQPGTPLTPRAVDKVAVG 185 (513)
Q Consensus 132 h~c~~~c~~~~~~~~p~~~--kk~~~s~~~~r~~~~~~~~~~~p~~~~~~~~~~~~ 185 (513)
++|-+||....-+.++|-. +... ..++....+.|.|+ ||-+|-+.++
T Consensus 655 q~cI~fl~~~nLgraTFi~LDki~~------~~~~l~~i~tpenv-PRLfDLv~~~ 703 (1293)
T KOG0996|consen 655 QECINFLKKNNLGRATFIILDKIKD------HQKKLAPITTPENV-PRLFDLVKCK 703 (1293)
T ss_pred HHHHHHHHHcCCCceeEEehHhhhh------hhhccCCCCCCCCc-chHhhhhccC
Confidence 4577777776666665443 2111 12223346888887 9999986554
No 77
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.28 E-value=81 Score=32.95 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 509 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~ 509 (513)
...+..-.|.+++.+...+...+..+...+++...-.++
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~ 138 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY 138 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 344455566666666667766777777777666544443
No 78
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.97 E-value=22 Score=36.99 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=8.4
Q ss_pred HHHHHHHhhhhHHHHHHHhhh
Q 010298 478 RLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 478 RL~~LE~ess~L~k~v~~~kS 498 (513)
....++++...+.+....++.
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443344433
No 79
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=70.96 E-value=66 Score=35.37 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCCCCccccc
Q 010298 158 SFGRKNKASDSQPGTPLTPRAVD 180 (513)
Q Consensus 158 ~~~r~~~~~~~~~~~p~~~~~~~ 180 (513)
.||++-|+. ..+.|+|...+.
T Consensus 3 q~~~~tKk~--~~~~~~t~~~lr 23 (424)
T PF03915_consen 3 QYGDKTKKC--VLPNPLTINSLR 23 (424)
T ss_dssp -----------------------
T ss_pred CcCCeeeee--eCCCCCCHHHHH
Confidence 566666655 455666544333
No 80
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=70.47 E-value=99 Score=29.30 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHh
Q 010298 444 LESTKKELESQMNELALKEKEVAG-LKESVAKTKARLSDLELE 485 (513)
Q Consensus 444 ~e~~kkELEe~leeL~qKekev~d-~~erv~e~k~RL~~LE~e 485 (513)
.+..+++-++=++++.++..+|.+ .++.+..+++.-+.|+.+
T Consensus 102 ~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~~ 144 (145)
T PF14942_consen 102 REQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEKK 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334456667778888888888888 577777777777766643
No 81
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.08 E-value=55 Score=35.32 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=28.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010298 465 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 507 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS 507 (513)
..++++++.+++++|.+||.+...++..+..+-.++=++...+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 3445556677777777777777777777666666666654443
No 82
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.91 E-value=50 Score=35.97 Aligned_cols=109 Identities=14% Similarity=0.263 Sum_probs=53.2
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH--HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA--IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK 463 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ea--re~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKek 463 (513)
.......|..+...|.++++.. .=|+..++.+.+- +++--..+.+.+++...+++-+.+..-+|-++.|+..
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~---~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~--- 280 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQ---SRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYN--- 280 (395)
T ss_pred cccccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445556666666677766543 3345555555542 1333344566666665444333333334444444444
Q ss_pred HHhhhHHHHHHHHHHHHHH-HHhhhhHHHHHHHhhhhhhhcc
Q 010298 464 EVAGLKESVAKTKARLSDL-ELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~L-E~ess~L~k~v~~~kSKV~kF~ 504 (513)
++..+..|.+|+.=. .+..-+|...|...+.+|.+.+
T Consensus 281 ----LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 281 ----LKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred ----HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444455544422 2333344455555555555544
No 83
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.89 E-value=99 Score=30.71 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 440 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 440 ~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
....++.+.+|++..-....+.++.+.+.++++.++..++.+++.-...|.-.+..+-..++.|
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333344444444444444555555555555544444444444444444444
No 84
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.85 E-value=1.6e+02 Score=36.19 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=65.5
Q ss_pred HHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHH-HhcCcchhhhhhHHHHHH
Q 010298 343 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV-ESAQIDVDWLRNILNEIS 421 (513)
Q Consensus 343 iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dL-e~aGfKVDWLekKLeEV~ 421 (513)
+.+-||-.-||| .+-+..+.-|.-+++-|+++-. +..|+..+..+ +..+-+|.||+..|.-+.
T Consensus 150 f~~vi~~~Qge~--~~~~~~~~~rk~~~d~if~~~~--------------y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~ 213 (1311)
T TIGR00606 150 LNNVIFCHQEDS--NWPLSEGKALKQKFDEIFSATR--------------YIKALETLRQVRQTQGQKVQEHQMELKYLK 213 (1311)
T ss_pred HhhceeeCCccc--ccccCChHHHHHHHHHHhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667887 3566677777777776665432 22333333332 334466677777777666
Q ss_pred HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 422 EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 422 Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
..++.++....--.+............+.++.++.++.....++-.....+..+..+|..|+.....+...+..++..+
T Consensus 214 ~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i 292 (1311)
T TIGR00606 214 QYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKM 292 (1311)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6554333222211111110111111122233333344433333333444444555555555554444444444444433
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.81 E-value=1.6e+02 Score=33.36 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 455 MNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 455 leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k 491 (513)
.++|...++++.+++..+..+..++.+++.....+.+
T Consensus 427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333
No 86
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.66 E-value=78 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=11.0
Q ss_pred cchhhhhhHHHHHHHHHHhh
Q 010298 408 IDVDWLRNILNEISEAIEFS 427 (513)
Q Consensus 408 fKVDWLekKLeEV~Eare~~ 427 (513)
-|++=|++...+|....+.+
T Consensus 8 ~K~~~lek~k~~i~~e~~~~ 27 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVESL 27 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666555433
No 87
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.52 E-value=77 Score=37.20 Aligned_cols=88 Identities=25% Similarity=0.344 Sum_probs=45.4
Q ss_pred HhcCcchhhhhhHHHHHHHHHHhhhhh------hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHH
Q 010298 404 ESAQIDVDWLRNILNEISEAIEFSTQH------QTIDAAKANCVNLLESTKKELESQMNELALKE---KEVAGLKESVAK 474 (513)
Q Consensus 404 e~aGfKVDWLekKLeEV~Eare~~~~~------~~le~eKd~~e~~~e~~kkELEe~leeL~qKe---kev~d~~erv~e 474 (513)
...-+..+||+.+++.+....+-+... +++.++.+ ..+...+++...++++.... .++.++++++.+
T Consensus 522 ~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~----~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~ 597 (908)
T COG0419 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELR----QLEDRLQELKELLEELRLLRTRKEELEELRERLKE 597 (908)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466689998888887666432211 11122211 22233445555555555555 555555555555
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 010298 475 TKARLSDLELESNRLEQIIQA 495 (513)
Q Consensus 475 ~k~RL~~LE~ess~L~k~v~~ 495 (513)
.+.++.+++...+.+...+..
T Consensus 598 ~~~~~~~l~~~~~~l~~~~~~ 618 (908)
T COG0419 598 LKKKLKELEERLSQLEELLQS 618 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555554444433
No 88
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=69.00 E-value=1.1e+02 Score=29.08 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010298 438 ANCVNLLESTKKELESQMNELALKEKEVAGL 468 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL~qKekev~d~ 468 (513)
++..+.++.++.+|+.+..+|.+.+.+...+
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666665555555555444443
No 89
>PRK14160 heat shock protein GrpE; Provisional
Probab=68.77 E-value=21 Score=35.68 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=40.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 461 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 461 Kekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
.++++..+++++.++++++-++..+.....+++.-=+....+|....|+-+||
T Consensus 66 l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LL 118 (211)
T PRK14160 66 LKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELL 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555667778888998888888888888887888888888777776665
No 90
>PLN02939 transferase, transferring glycosyl groups
Probab=68.73 E-value=61 Score=39.11 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHhHHHhcCcchhhhhhHHHHH
Q 010298 394 KEMMAVLKDVESAQIDVDWLRNILNEI 420 (513)
Q Consensus 394 ~ea~~~L~dLe~aGfKVDWLekKLeEV 420 (513)
.++..+|.+=+..+=+++-|+.||-|-
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 156 EDLEKILTEKEALQGKINILEMRLSET 182 (977)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 344444555555555555555555553
No 91
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.55 E-value=90 Score=36.30 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=12.8
Q ss_pred HHhcCcchhhhhhHHHHHHHHHH
Q 010298 403 VESAQIDVDWLRNILNEISEAIE 425 (513)
Q Consensus 403 Le~aGfKVDWLekKLeEV~Eare 425 (513)
|....-+-|=|+.||-++.-+|+
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666665553
No 92
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.47 E-value=45 Score=33.05 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=5.1
Q ss_pred chhhhhhHH
Q 010298 409 DVDWLRNIL 417 (513)
Q Consensus 409 KVDWLekKL 417 (513)
+.+|+..+.
T Consensus 76 ~~GWV~~~~ 84 (206)
T PRK10884 76 RTAWIPLKQ 84 (206)
T ss_pred CEEeEEHHH
Confidence 346766654
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.38 E-value=63 Score=37.49 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 010298 410 VDWLRNILNEISEAIEFST 428 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~ 428 (513)
+.=||+||.|-..+|..+.
T Consensus 490 l~~LEkrL~eE~~~R~~lE 508 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLE 508 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457777777777665544
No 94
>PRK10869 recombination and repair protein; Provisional
Probab=68.24 E-value=1e+02 Score=34.48 Aligned_cols=18 Identities=11% Similarity=-0.045 Sum_probs=11.8
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 010298 410 VDWLRNILNEISEAIEFS 427 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~ 427 (513)
|+.++.||..|...++.+
T Consensus 298 l~~ie~Rl~~l~~L~rKy 315 (553)
T PRK10869 298 LAELEQRLSKQISLARKH 315 (553)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 477777777776555433
No 95
>PLN02320 seryl-tRNA synthetase
Probab=68.23 E-value=57 Score=36.56 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 507 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kS 507 (513)
++++..+++++|..||.+...++..+..+=..+=++...+
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~ 174 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPD 174 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4445556666666666666666555555555555554433
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.91 E-value=1.2e+02 Score=35.56 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 010298 373 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 415 (513)
Q Consensus 373 Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLek 415 (513)
|+.-++.+++.. +.+...|.+....+..|.. .|+||++
T Consensus 284 L~~~L~e~Q~qL--e~a~~als~q~eki~~L~e---~l~aL~~ 321 (717)
T PF09730_consen 284 LLSNLQESQKQL--EHAQGALSEQQEKINRLTE---QLDALRK 321 (717)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 444455555544 6677777777777777773 3777776
No 97
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.90 E-value=60 Score=37.34 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=55.7
Q ss_pred HHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010298 396 MMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCV---NLLESTKKELESQMNELALKEKEVAGLKESV 472 (513)
Q Consensus 396 a~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e---~~~e~~kkELEe~leeL~qKekev~d~~erv 472 (513)
..-++.+|+.|+=++-.|+...+.+.+.-........+. +-++++ ..+..+..++.....++.+.+....+ -+
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~-~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~---e~ 312 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA-KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVE---ER 312 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344566666666666666666665554443222222222 001111 12222333444444444444444444 55
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 473 AKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 473 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+.++..+..||.+.......+.-++-|+..|
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677778888877777777777777777666
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.83 E-value=1.7e+02 Score=35.92 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=10.7
Q ss_pred HHHHHhHHHhcCcchhhhhhHHH
Q 010298 396 MMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 396 a~~~L~dLe~aGfKVDWLekKLe 418 (513)
+.....++.++.-.|+.|+..+.
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~ 816 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQ 816 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444455555544443
No 99
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.73 E-value=1.3e+02 Score=34.01 Aligned_cols=103 Identities=14% Similarity=0.250 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 010298 363 NSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVN 442 (513)
Q Consensus 363 ~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~ 442 (513)
+-++++|+.=|-.|+..|+... +....+. -.-.=|.+||+.. +.+++.++.
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~ad-------------SKa~~f~---~Ec~aL~~rL~~a-------------E~ek~~l~e 462 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHAD-------------SKAVHFY---AECRALQKRLESA-------------EKEKESLEE 462 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH---HHHHHHHHHHHHH-------------HHHHHHHHH
Confidence 5589999999988888876544 1111111 0112244444433 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 443 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 443 ~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
.++.+.+.+....+||.--+.- -..++..|.++|..|-+..++-...|..+|
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~N---YE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRN---YEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444333332333222222 245888888899888888888877777776
No 100
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=67.62 E-value=1.3e+02 Score=29.54 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhh
Q 010298 392 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST 428 (513)
Q Consensus 392 dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~ 428 (513)
+|.++-..|..+.. .--=|+.++++.......+.
T Consensus 39 ~l~~ar~~lA~~~a---~~k~~e~~~~~~~~~~~~~~ 72 (219)
T TIGR02977 39 TLVEVRTTSARTIA---DKKELERRVSRLEAQVADWQ 72 (219)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444431 11234555555554444333
No 101
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=67.61 E-value=1.4e+02 Score=35.91 Aligned_cols=29 Identities=24% Similarity=0.153 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
+|..+..++++..++|.+.+.|+-+|++-
T Consensus 380 elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 380 ELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 33333444444445555555555555543
No 102
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.58 E-value=1.7e+02 Score=32.31 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=23.0
Q ss_pred EeccEEeecchHHHHHHHHhHcccccccCcccch
Q 010298 330 SVGKYHVRASISSILQSIISRYGDIAANCNLESN 363 (513)
Q Consensus 330 ~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~ 363 (513)
.+.-|++.-.....+..+..-+|+|.....-.+.
T Consensus 211 i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~ 244 (582)
T PF09731_consen 211 IVEEYKELVEEEPEVQELVSIFNDLIESINEGNL 244 (582)
T ss_pred hhhhhhhhhhhhhhHHHHHHhccchhhhhccccc
Confidence 3455666666777778888888888766554444
No 103
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.54 E-value=93 Score=28.31 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGL 468 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~ 468 (513)
..++.++.++.+.+.++...+.+..+.
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554443
No 104
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.41 E-value=51 Score=39.18 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHhhhhH
Q 010298 442 NLLESTKKELESQ--MNELALKEKEVAGLKESVAK----TKARLSDLELESNRL 489 (513)
Q Consensus 442 ~~~e~~kkELEe~--leeL~qKekev~d~~erv~e----~k~RL~~LE~ess~L 489 (513)
.++|++++|||.+ ++.=.-+.+||-.-+.|..+ .++|+.+|+.+...|
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletL 449 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETL 449 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777655 22222233333332222222 245555555554444
No 105
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.05 E-value=58 Score=27.33 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=36.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010298 411 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 484 (513)
Q Consensus 411 DWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ 484 (513)
.=|+.||+. ++..|+.+..+-. .+++++.....|=++..+.+..++.||++|=.||..||.
T Consensus 3 ~~Le~kle~------Li~~~~~L~~EN~-------~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 3 QALAAQVEH------LLEYLERLKSENR-------LLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345666663 3344444444322 234444444455566666677778899999999988874
No 106
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.72 E-value=1.6e+02 Score=33.09 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=7.5
Q ss_pred ccCCCCCCCCcc
Q 010298 206 SENGKSFSRPEH 217 (513)
Q Consensus 206 ~~~~~~~~~~~~ 217 (513)
..|++.|++.++
T Consensus 134 efNGk~Fn~le~ 145 (493)
T KOG0804|consen 134 EFNGKQFNSLEP 145 (493)
T ss_pred HcCCCcCCCCCc
Confidence 456777776654
No 107
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=65.57 E-value=1.8e+02 Score=31.14 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=57.6
Q ss_pred HHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh-hhhHHHHH
Q 010298 342 SILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-LRNILNEI 420 (513)
Q Consensus 342 ~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDW-LekKLeEV 420 (513)
+.|...=...=.-|.+-+..|..||...-.+|-..+..|..-- +-++ .-...-+.++..|.-+|.| |.+-+.||
T Consensus 200 ~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~--~~vn---~al~~Ri~et~~ak~~Le~ql~~~~~ei 274 (384)
T PF03148_consen 200 ESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQA--DAVN---AALRKRIHETQEAKNELEWQLKKTLQEI 274 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444444456778888999999999888888888886433 1111 1123345666666677777 55666777
Q ss_pred HHHHHhhhhhhhHHHHHHh
Q 010298 421 SEAIEFSTQHQTIDAAKAN 439 (513)
Q Consensus 421 ~Eare~~~~~~~le~eKd~ 439 (513)
.+..+.+..-..+-..|+.
T Consensus 275 ~~~e~~i~~L~~ai~~k~~ 293 (384)
T PF03148_consen 275 AEMEKNIEDLEKAIRDKEG 293 (384)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7666555555554444443
No 108
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.29 E-value=44 Score=35.28 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLE 483 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE 483 (513)
-|++.+|||+.+++-|+-|+..|.+-.
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 466777899999999999999998753
No 109
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=65.20 E-value=95 Score=27.13 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
|+..+++|.++..+++..-.+|-++.+++..||.-...|..-...+.+|+++
T Consensus 47 l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 47 LEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444445555555555555566666667777777777777777777777654
No 110
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.06 E-value=1.6e+02 Score=36.11 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhHHHH--------HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 457 ELALKEKEVAGLKESV--------AKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 457 eL~qKekev~d~~erv--------~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
++.++++.+.+++++. .++...|.+|+.+..+++..+..|+.+...|.
T Consensus 373 ~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444 33344444444444444444555555555543
No 111
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.43 E-value=1.2e+02 Score=34.47 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 449 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 449 kELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
.++...+.-|.+++.+++-++.++..|.+-+.+|..+..+|...|..++.
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33333444455555555555555555555555555555555555544444
No 112
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.37 E-value=42 Score=40.62 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010298 456 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 456 eeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
.+|..+..++.++..-+.+.++|+.++..+.+.+.+....+
T Consensus 425 ~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 425 SELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555544444333
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=64.34 E-value=1.3e+02 Score=33.70 Aligned_cols=6 Identities=33% Similarity=0.744 Sum_probs=2.5
Q ss_pred ccEEee
Q 010298 332 GKYHVR 337 (513)
Q Consensus 332 nGFqVl 337 (513)
.||..-
T Consensus 245 ~gy~~~ 250 (569)
T PRK04778 245 EGYHLD 250 (569)
T ss_pred cCCCCC
Confidence 444433
No 114
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=64.25 E-value=1.7e+02 Score=29.64 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 440 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 440 ~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
..++-+...++.++....|+-++-+.-...+|.+.-...+.+|+.+..-+..++.++..+.+++.
T Consensus 72 Ak~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 72 AKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Confidence 34455556677777777888888888888888888889999999999999999998888887763
No 115
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=64.00 E-value=83 Score=30.53 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=42.6
Q ss_pred hHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010298 401 KDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA-------NCVNLLESTKKELESQMNELALKEKEVAGLKESVA 473 (513)
Q Consensus 401 ~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd-------~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~ 473 (513)
+|.=..|+.+||-..=++=| + +..|+-+.+ -+-..+..++.||++...|=+.+++.++|.
T Consensus 37 SdfY~~gvEfdw~~eFveyV----~----cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd~----- 103 (158)
T PF03112_consen 37 SDFYSSGVEFDWKDEFVEYV----D----CVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKDL----- 103 (158)
T ss_pred hHHHHhhhhhhHHHHHHHHH----H----HHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHHH-----
Confidence 35667899999976544322 1 222332222 223445556777777777777777777773
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 010298 474 KTKARLSDLELESNRLEQ 491 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k 491 (513)
++.++.++.++..=+.+
T Consensus 104 -LK~ki~~I~~~~~Li~~ 120 (158)
T PF03112_consen 104 -LKIKIDEIMNKYPLINH 120 (158)
T ss_pred -HHHHHHHHHhhccHHHH
Confidence 34444455555544433
No 116
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.81 E-value=73 Score=39.26 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
.+.++.-++.+++..+..|+..+.+++.+...+.++..
T Consensus 536 ~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 536 SLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444555555555555444444444444
No 117
>PRK11519 tyrosine kinase; Provisional
Probab=63.03 E-value=2.2e+02 Score=32.83 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=14.3
Q ss_pred ccccCcccchhHHHHHHHHHHH
Q 010298 354 IAANCNLESNSMRAYYLECLCS 375 (513)
Q Consensus 354 IAsnf~lKs~~lRs~YMn~Ll~ 375 (513)
|...|.-.+|..=...+|.|..
T Consensus 230 i~Is~~~~dP~~Aa~iaN~l~~ 251 (719)
T PRK11519 230 LSLTYTGEDREQIRDILNSITR 251 (719)
T ss_pred EEEEEEcCCHHHHHHHHHHHHH
Confidence 4455666777777767766644
No 118
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.03 E-value=27 Score=36.35 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHH-------hhhhHHHHHHHhhhhhhhccccchh
Q 010298 468 LKESVAKTKARLSDLEL-------ESNRLEQIIQATQSKVTKFSQKSLA 509 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~-------ess~L~k~v~~~kSKV~kF~~kSl~ 509 (513)
+..++..+..||.+++. +..+-.+.+..++.......|-+|+
T Consensus 268 l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ll 316 (344)
T PF12777_consen 268 LEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLL 316 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHH
Confidence 33444555555555443 3333345556666666666555443
No 119
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.73 E-value=39 Score=40.65 Aligned_cols=11 Identities=45% Similarity=0.929 Sum_probs=9.0
Q ss_pred CCcchhhHHHh
Q 010298 74 NPYHECGERCF 84 (513)
Q Consensus 74 NPyHeC~e~C~ 84 (513)
--|-+|.+.|-
T Consensus 55 ~qYF~Cd~ncG 65 (1243)
T KOG0971|consen 55 VQYFECDENCG 65 (1243)
T ss_pred eeeEecCCCcc
Confidence 36999999994
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.35 E-value=1.3e+02 Score=28.41 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=6.5
Q ss_pred HHhhHHHHHHHHHHH
Q 010298 437 KANCVNLLESTKKEL 451 (513)
Q Consensus 437 Kd~~e~~~e~~kkEL 451 (513)
++++.+.++.+.++|
T Consensus 19 ~dsle~~v~~LEreL 33 (140)
T PF10473_consen 19 KDSLEDHVESLEREL 33 (140)
T ss_pred HhhHHHHHHHHHHHH
Confidence 344444444444443
No 121
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.32 E-value=2e+02 Score=29.80 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 452 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 452 Ee~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
++.-..+...++++++.+++++.+..++.-|+.+..++..+|....
T Consensus 82 ~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 82 TEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444566777888888888888888888888888888777765443
No 122
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=62.19 E-value=2e+02 Score=30.05 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=64.9
Q ss_pred HHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCc----chhhhhhHHHHH
Q 010298 345 QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQI----DVDWLRNILNEI 420 (513)
Q Consensus 345 ~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGf----KVDWLekKLeEV 420 (513)
++|=-..++....|....+.-=+.|-+-+|+=|..+.... ..+-|.+....+.++.-..| +-.||.+-+..+
T Consensus 7 ~~id~~~~~~i~~~G~~~~~~~a~~s~~iL~~v~~~d~~~----vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~ 82 (333)
T PF05816_consen 7 KQIDLTNPDAILSFGAEAQEKIAQFSDRILDRVRNKDSGE----VGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKA 82 (333)
T ss_pred hhhCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhh
Confidence 3333344444455555555555666666666566553333 33345555555555444443 235555533333
Q ss_pred H-HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 421 S-EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 421 ~-Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
. -..+|+.+|+.+...-|.+-..++..+.+|......|.+...+..+
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~ 130 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWE 130 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3346778899988887776666666666666655555555444433
No 123
>PRK14143 heat shock protein GrpE; Provisional
Probab=62.08 E-value=15 Score=37.17 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
++.+++.++-++..+...+.+++.-=+....+|...+|+-+|
T Consensus 82 e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~l 123 (238)
T PRK14143 82 ELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEI 123 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444455444444444
No 124
>PRK14127 cell division protein GpsB; Provisional
Probab=61.68 E-value=69 Score=29.21 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=6.7
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 010298 463 KEVAGLKESVAKTKARLS 480 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~ 480 (513)
.++..+++++.++..|+.
T Consensus 51 ~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 51 QENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333333333333333333
No 125
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.65 E-value=1.5e+02 Score=36.32 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhh
Q 010298 391 AKVKEMMAVLKDVESAQIDVDWLR 414 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~aGfKVDWLe 414 (513)
.+|..+...|..|+...-|..=|+
T Consensus 691 ~el~~le~eL~~le~~~~kf~~l~ 714 (1174)
T KOG0933|consen 691 KELEALERELKSLEAQSQKFRDLK 714 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 126
>PRK12704 phosphodiesterase; Provisional
Probab=61.60 E-value=1.2e+02 Score=33.96 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=6.1
Q ss_pred hHHHHHHHhhhhhhhc
Q 010298 488 RLEQIIQATQSKVTKF 503 (513)
Q Consensus 488 ~L~k~v~~~kSKV~kF 503 (513)
++.+.+.....++++.
T Consensus 132 ~~~~~~~~~~~~l~~~ 147 (520)
T PRK12704 132 ELEELIEEQLQELERI 147 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344433
No 127
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=61.24 E-value=42 Score=33.33 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 454 QMNELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 454 ~leeL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
.++++-..|.++.+.+.+|+.++++|..|+..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777888888888877754
No 128
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=61.16 E-value=1.3e+02 Score=32.66 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=22.0
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHH
Q 010298 403 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLES 446 (513)
Q Consensus 403 Le~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~ 446 (513)
|....-.|++|+.+|.-......+-.+.+.++.-.....+.+..
T Consensus 279 L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a~~~ 322 (432)
T TIGR00237 279 LHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNK 322 (432)
T ss_pred HHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777754444443333444444444433333333
No 129
>PLN02678 seryl-tRNA synthetase
Probab=60.99 E-value=93 Score=34.33 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 467 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
++.+++.++++.|..||.+...++..+..+-..+=++
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444555566666666666666655555555554444
No 130
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=60.87 E-value=54 Score=28.62 Aligned_cols=57 Identities=12% Similarity=0.348 Sum_probs=33.5
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchhh
Q 010298 352 GDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDW 412 (513)
Q Consensus 352 PDIAsnf~lKs~~lRs~YMn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dLe~aGfKVDW 412 (513)
+++|.-|.+.-..+| +|-+. +||..-. .+.-+-.+.++|..+ ..+..|++.||-|+=
T Consensus 4 ~e~a~~~gvs~~tlr-~ye~~--gll~~~~r~~~gyR~Y~~~~l~~l-~~I~~lr~~G~sL~e 62 (113)
T cd01109 4 KEVAEKTGLSADTLR-YYEKE--GLLPPVKRDENGIRDFTEEDLEWL-EFIKCLRNTGMSIKD 62 (113)
T ss_pred HHHHHHHCcCHHHHH-HHHHC--CCCCCCCcCCCCCccCCHHHHHHH-HHHHHHHHcCCCHHH
Confidence 455555555555555 44332 3332111 122367888888865 566688999999863
No 131
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=60.36 E-value=39 Score=36.47 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=8.4
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 010298 463 KEVAGLKESVAKTKARLSD 481 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~ 481 (513)
+|+.+++++++++.++|..
T Consensus 83 ~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 83 EEIKELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 132
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.08 E-value=1.6e+02 Score=28.46 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 010298 468 LKESVAKTKARLSDLELESN 487 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess 487 (513)
++..+.+++.+|.+++.+..
T Consensus 117 l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 117 LKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 133
>PRK14154 heat shock protein GrpE; Provisional
Probab=59.96 E-value=18 Score=36.21 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=34.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
++.++++++.++++++-++..+..++.+++.--+....+|...+|+-.||
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LL 109 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLL 109 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777777777777777777777777777777666666554
No 134
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=59.82 E-value=2.9e+02 Score=31.77 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh--hhhHHHHHHHHH
Q 010298 367 AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 424 (513)
Q Consensus 367 s~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDW--LekKLeEV~Ear 424 (513)
..||+-+=+||-+|++.- -+.|.+.-.-..+|+.+|+.|+= +.++|..+.+..
T Consensus 210 ~~~~e~IP~L~~e~~~~l-----P~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l 264 (570)
T COG4477 210 RSIMERIPSLLAELQTEL-----PGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQL 264 (570)
T ss_pred HHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHH
Confidence 478999999999997554 36677777888899999998864 345555555444
No 135
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.62 E-value=1.5e+02 Score=27.45 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhH
Q 010298 468 LKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L 489 (513)
++.+|.+...++..++.....+
T Consensus 150 l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 150 LEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 136
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=59.27 E-value=1.2e+02 Score=31.02 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 010298 383 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 419 (513)
Q Consensus 383 spl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeE 419 (513)
.|++.+.+.||.++....+-|+..-+.+|-.+.|+..
T Consensus 110 ~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~ 146 (246)
T cd07618 110 DPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQ 146 (246)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHh
Confidence 3568888999999999999999999999999999864
No 137
>PRK00106 hypothetical protein; Provisional
Probab=59.18 E-value=1.2e+02 Score=34.46 Aligned_cols=32 Identities=3% Similarity=0.243 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 474 KTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
++..+..+|+.....+++.+.....++++..|
T Consensus 133 eLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 133 SLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344444444444444444444445554443
No 138
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.14 E-value=2.3e+02 Score=29.59 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 010298 367 AYYLECLCSVVQEL 380 (513)
Q Consensus 367 s~YMn~Ll~LIetL 380 (513)
.+++-+|+++|-..
T Consensus 4 k~~~a~~~s~v~~s 17 (265)
T COG3883 4 KILLAVLLSLVIIS 17 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555444
No 139
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.00 E-value=2.2e+02 Score=34.92 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=54.8
Q ss_pred cccccccCcccc----hhHHHHHHHHHHHHHHHHhcch-------hhhccHHHHH----HHHHHHhHHHhcCcchhhhhh
Q 010298 351 YGDIAANCNLES----NSMRAYYLECLCSVVQELQSTS-------LMQMTKAKVK----EMMAVLKDVESAQIDVDWLRN 415 (513)
Q Consensus 351 HPDIAsnf~lKs----~~lRs~YMn~Ll~LIetL~ksp-------l~eLS~~dL~----ea~~~L~dLe~aGfKVDWLek 415 (513)
|.-=|.|++=|- .-+|.+||-=+-.=|+.|..=. ---|+++... +--..-..|+...-+|+=|++
T Consensus 383 YA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 383 YAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555442 2367777777777777775322 1124555441 111223344555578888888
Q ss_pred HHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010298 416 ILNEISEAIE-FSTQHQTIDAAKANCVNLLESTKKELESQMNELA 459 (513)
Q Consensus 416 KLeEV~Eare-~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~ 459 (513)
.|.++.+.-- .....+.+.++++.+...+...-++|+.+.+++.
T Consensus 463 ~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~ 507 (1041)
T KOG0243|consen 463 QLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQ 507 (1041)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776542 2223344444444444444444444433333333
No 140
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.93 E-value=1.6e+02 Score=28.38 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010298 440 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 440 ~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
.+..+..+..+|+++-+.+.....|+.-..-......+++..|+.+...|=++....
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555556666666677777888888888888776555443
No 141
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=58.92 E-value=1.4e+02 Score=38.44 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=70.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcchh--hhc------c---HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH-HHhh
Q 010298 360 LESNSMRAYYLECLCSVVQELQSTSL--MQM------T---KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEA-IEFS 427 (513)
Q Consensus 360 lKs~~lRs~YMn~Ll~LIetL~kspl--~eL------S---~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ea-re~~ 427 (513)
..+-.+++-| ..++..|+.|+.+.- +.. | .+++......|.-|.+-.+=| |.=++-..+. .++.
T Consensus 1174 ~e~~~L~qq~-~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~L---Ree~~~~~~k~qEl~ 1249 (1822)
T KOG4674|consen 1174 RENARLKQQV-ASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVL---REENEANLEKIQELR 1249 (1822)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHH
Confidence 3455555554 555666666654320 111 1 234445555555555555432 2222222211 2445
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010298 428 TQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKAR 478 (513)
Q Consensus 428 ~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~R 478 (513)
++...+..+....+..+.+++.+|.....+|...+.++..|+.|..++...
T Consensus 1250 ~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1250 DKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888999988889999999999998888777544
No 142
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.47 E-value=1.1e+02 Score=35.05 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhhhh
Q 010298 448 KKELESQMNELALKEKEVAG-LKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d-~~erv~e~k~RL~~LE~ess~ 488 (513)
-+++.+++..+..+.+.|.. |..+..+.+.++.++|.....
T Consensus 148 i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~ 189 (611)
T KOG2398|consen 148 IKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLS 189 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544 677777777777777665443
No 143
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=58.11 E-value=1e+02 Score=31.18 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 447 TKKELESQMNELALKEKE------------VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 447 ~kkELEe~leeL~qKeke------------v~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
++-.||.+|+.|.-.+.+ +..+++++.|-.+|+=.||.+.++.+|.- .-.|.+++|.
T Consensus 29 LR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a 97 (205)
T PF12240_consen 29 LRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKY-LEESAMRQFA 97 (205)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445566666666443332 34467788888888888888888888876 5677777774
No 144
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=57.60 E-value=53 Score=35.72 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=48.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 010298 361 ESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 415 (513)
Q Consensus 361 Ks~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLek 415 (513)
+.-.=+.++-+.+...++.|-...-.++|++.|.+|...+..+.+++.|+.=|..
T Consensus 133 kde~s~~y~~~~~~~~~e~lEe~~g~~iT~e~L~da~~r~N~~rea~~k~~kL~~ 187 (379)
T COG1775 133 KDEPSVKYWHNELDKFKELLEELTGNEITEEKLRDAIARYNRLREALAKLYKLAK 187 (379)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4333388999999999999999998999999999999999999999888877765
No 145
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.25 E-value=2.2e+02 Score=29.41 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=32.1
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 419 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeE 419 (513)
|++.|-+.||.++....+-|+..-+.+|--+.|+.-
T Consensus 111 PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~ 146 (248)
T cd07619 111 PLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQ 146 (248)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Confidence 568888999999999999999999999999999863
No 146
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=57.18 E-value=1e+02 Score=25.86 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 010298 471 SVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~ 492 (513)
.+.+.+.++..++.+...|...
T Consensus 48 ~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666555555443
No 147
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=57.11 E-value=71 Score=36.30 Aligned_cols=40 Identities=38% Similarity=0.499 Sum_probs=19.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 461 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 461 Kekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
+++.+.-.++++.++..+|.+++++..-+.-.+..+-..+
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555444444444333
No 148
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=56.89 E-value=1.3e+02 Score=26.11 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHHHh
Q 010298 391 AKVKEMMAVLKDVES 405 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~ 405 (513)
.++.+...++..|+.
T Consensus 27 ~~~~E~~~v~~EL~~ 41 (105)
T cd00632 27 AQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344444455555443
No 149
>PRK14158 heat shock protein GrpE; Provisional
Probab=56.89 E-value=23 Score=34.93 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 466 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 466 ~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
.+.++++.++++++-++..+...+.+++.-=+..+.+|...+|+-+||
T Consensus 50 ~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lL 97 (194)
T PRK14158 50 AAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEIL 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666666666666666666666666666666555555543
No 150
>PRK14139 heat shock protein GrpE; Provisional
Probab=56.82 E-value=23 Score=34.76 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010298 473 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 473 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
.++++++-++..+.....+++.-=+....+|...+|+.+|
T Consensus 49 ~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~L 88 (185)
T PRK14139 49 AELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESL 88 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 151
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=56.79 E-value=51 Score=34.30 Aligned_cols=38 Identities=11% Similarity=0.308 Sum_probs=33.2
Q ss_pred cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 010298 351 YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 389 (513)
Q Consensus 351 HPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS 389 (513)
-|+.-.+|++-+-.++.+=...+..+|+.+|-+. +.|.
T Consensus 56 ~~~~~k~C~iG~g~~k~mtn~t~mk~IeeVq~S~-~~Lr 93 (264)
T PF07246_consen 56 MPGFNKKCRIGSGDLKEMTNKTMMKIIEEVQLSI-SNLR 93 (264)
T ss_pred CCccccCcccCCcchhhcchhhHHHHHHHHhccc-ccce
Confidence 5566689999999999999999999999999877 6665
No 152
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.62 E-value=49 Score=30.89 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhHHHHHH
Q 010298 475 TKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 475 ~k~RL~~LE~ess~L~k~v~ 494 (513)
+...+.+|+.+...|...|.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444333333333
No 153
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.26 E-value=1.2e+02 Score=33.93 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
.++-+..|+.+|+.+.++|-..+.++||=.++..+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklae 332 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455678888888888888888888887777654
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=56.13 E-value=2.9e+02 Score=30.56 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhh-----HHHHHHh
Q 010298 365 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT-----IDAAKAN 439 (513)
Q Consensus 365 lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~-----le~eKd~ 439 (513)
+-.+|++=++.+++.|.+.. ..|+++-|.-+...|..++..+-... ..+|.+..+..+..+...+ ++..+..
T Consensus 257 ~g~~l~~k~~~~~e~l~~~~-~~l~~e~l~~~~~~l~~l~~~~~~~~--~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~ 333 (429)
T PF10037_consen 257 WGLVLYGKALDAMELLASID-LKLCKEVLDLLQEVLEKLESESDEES--VKKLQEAVDKCEKSNSFEELLLEEVKQSKNK 333 (429)
T ss_pred HhHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHhcccccchhh--HHHHHHHHhhhhhccchHHHhHHHHHHhhhh
Confidence 34567777778888888776 66788877777777777665332211 2223332222111011111 1111111
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHhhhhH
Q 010298 440 CVNLLES---TKKELESQMNELALKEKEVAG-----LKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 440 ~e~~~e~---~kkELEe~leeL~qKekev~d-----~~erv~e~k~RL~~LE~ess~L 489 (513)
.+.++.. .=++.++..+.+.+.+.+.-+ .++|++++...+.+|+.+...+
T Consensus 334 ~E~~l~~q~~~f~~W~~~rq~~~~~q~~~l~~~~~~~~~rl~~ie~~~~~l~e~e~~l 391 (429)
T PF10037_consen 334 EEPLLPEQCERFQEWEEKRQSLLKEQSERLLTLTQLRKERLEEIEKEDKELYEQEQQL 391 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 123455555666666666666 6778888888888888777665
No 155
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=56.10 E-value=58 Score=36.66 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=10.7
Q ss_pred hhhhhhHHHHHHHHHHhhhhh
Q 010298 410 VDWLRNILNEISEAIEFSTQH 430 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~ 430 (513)
+..+..+++++.++.++++++
T Consensus 45 ~~~~~~~~~~~~~~l~~L~~~ 65 (646)
T PRK05771 45 LRKLRSLLTKLSEALDKLRSY 65 (646)
T ss_pred HhHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555544444
No 156
>PRK14155 heat shock protein GrpE; Provisional
Probab=55.90 E-value=16 Score=36.33 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
++.++++++-++..+...+.+++.-=+....+|...+|+.+||
T Consensus 28 e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 70 (208)
T PRK14155 28 EVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLL 70 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334555555555555555555555555555555555555543
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.85 E-value=1.3e+02 Score=34.89 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=7.0
Q ss_pred ccCcccchhHHH
Q 010298 356 ANCNLESNSMRA 367 (513)
Q Consensus 356 snf~lKs~~lRs 367 (513)
.++.+.|.|-|-
T Consensus 334 ~~~~~~ddH~RD 345 (652)
T COG2433 334 LKISVSDDHERD 345 (652)
T ss_pred cCCCCCCchHHH
Confidence 355566666664
No 158
>PRK14153 heat shock protein GrpE; Provisional
Probab=55.73 E-value=20 Score=35.44 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=29.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
++.++++++.++++++.++..+...+.++..-=+....+|....|+.+||
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LL 90 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLL 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445555666666666666666666655566666665555555554
No 159
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=55.40 E-value=40 Score=29.32 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=13.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 461 KEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 461 Kekev~d~~erv~e~k~RL~~LE~e 485 (513)
..+++...+++|.++.+||..|+..
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666655533
No 160
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.31 E-value=2.4e+02 Score=34.66 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.4
Q ss_pred HHhcch
Q 010298 379 ELQSTS 384 (513)
Q Consensus 379 tL~ksp 384 (513)
.|.+++
T Consensus 730 r~~~~e 735 (1174)
T KOG0933|consen 730 RLEQNE 735 (1174)
T ss_pred HHhcCh
Confidence 344444
No 161
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.09 E-value=1.9e+02 Score=27.27 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 509 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~ 509 (513)
..+.-.+.++.....++....+++.+..+.+...++.|..++.+..++......++.+-.-|..-+|+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 33444577777777888888888888888999999999999999999988888888777766555554
No 162
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=54.99 E-value=72 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 450 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 450 ELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
.|+..++.|-+...+... .=...++++..+..++..|-.....+++||+..
T Consensus 4 ~Le~kle~Li~~~~~L~~---EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKS---ENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544 334567778888888888888888888888754
No 163
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=54.92 E-value=1.8e+02 Score=27.13 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSK 499 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSK 499 (513)
++.+...+...++-....|+......--|
T Consensus 102 kl~e~d~~ae~~eRkv~~le~~~~~~E~k 130 (143)
T PF12718_consen 102 KLREADVKAEHFERKVKALEQERDQWEEK 130 (143)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444333333333
No 164
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=54.69 E-value=76 Score=27.95 Aligned_cols=59 Identities=10% Similarity=0.298 Sum_probs=32.2
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 010298 353 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 415 (513)
Q Consensus 353 DIAsnf~lKs~~lRs~YMn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLek 415 (513)
++|.-+.+.-..+| +|-+ .+||.-- ..+--+-.+.+++..+ ..+..|++.||-|.=++.
T Consensus 5 eva~~~gvs~~tLR-yYe~--~GLl~p~~r~~~gyR~Y~~~~i~~l-~~I~~lr~~G~sl~eI~~ 65 (123)
T cd04770 5 ELAKAAGVSPDTIR-YYER--IGLLPPPQRSENGYRLYGEADLARL-RFIRRAQALGFSLAEIRE 65 (123)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCCCCCCCCccCCHHHHHHH-HHHHHHHHCCCCHHHHHH
Confidence 44445555555554 3433 2333211 1223467788888776 556668999998654333
No 165
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.54 E-value=1.2e+02 Score=37.03 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 499 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSK 499 (513)
+..|+....||...+.++.++.-++.+++.+|...|.....|.+.+--+..+
T Consensus 703 k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 703 KRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555554444444444333333
No 166
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.51 E-value=42 Score=32.20 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
++..++.++.+..+.+.+...-+..|.+|..-|.-.+.-+..|+.+
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444443
No 167
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.37 E-value=40 Score=35.20 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
+++..+.|..++.++.++..++.++...+.+...+..+|...+.....|+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333344444444444444444444444444444444444444444443
No 168
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=54.12 E-value=4.8e+02 Score=32.22 Aligned_cols=77 Identities=14% Similarity=-0.007 Sum_probs=39.8
Q ss_pred ccccce-EEeccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHh
Q 010298 323 SVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLK 401 (513)
Q Consensus 323 SvvsEt-V~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~ 401 (513)
++.+++ ..|||+.|..|.+..+-.=|..-=|=---|.++-..-==+=| +=|+.|-.+- ..+..++|-..+..|.
T Consensus 110 ~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L----~pi~LL~eTe-kAig~~~ll~~h~eL~ 184 (1072)
T KOG0979|consen 110 SRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARL----SPIELLVETE-KAIGAEELLQYHIELM 184 (1072)
T ss_pred eecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcC----ChHHHHHHHH-HhcCchhhHHHHHHHH
Confidence 333344 889999999888776666665543333334433221111111 1222222222 5566666666666665
Q ss_pred HHH
Q 010298 402 DVE 404 (513)
Q Consensus 402 dLe 404 (513)
+|.
T Consensus 185 ~lr 187 (1072)
T KOG0979|consen 185 DLR 187 (1072)
T ss_pred HHH
Confidence 554
No 169
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=54.11 E-value=1.1e+02 Score=32.34 Aligned_cols=47 Identities=11% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHHhcCc--chhhhhhHHHHHHHH--HHhhhhhhhHHHHHHh
Q 010298 393 VKEMMAVLKDVESAQI--DVDWLRNILNEISEA--IEFSTQHQTIDAAKAN 439 (513)
Q Consensus 393 L~ea~~~L~dLe~aGf--KVDWLekKLeEV~Ea--re~~~~~~~le~eKd~ 439 (513)
+...+....+|++.-| +|.=|+.+|++|.+. -+|++....|++..+.
T Consensus 25 ~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~ke 75 (291)
T KOG4466|consen 25 MSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKE 75 (291)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3344444445554444 466677888888754 3777777777777653
No 170
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.03 E-value=1.2e+02 Score=33.85 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 450 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 450 ELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
++++..+.|.+.+++..++.+.+..++..-.++.....++...|..++.+|++-
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444555555555555555555555555555566666666666666666653
No 171
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.69 E-value=1.5e+02 Score=25.61 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH
Q 010298 470 ESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 470 erv~e~k~RL~~LE~ess~L~k 491 (513)
+++.+++..|..||.+...++.
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 172
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.55 E-value=2.5e+02 Score=28.20 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHH----HHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhh
Q 010298 368 YYLECLCSVVQELQSTSLMQMTKAKV----KEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 427 (513)
Q Consensus 368 ~YMn~Ll~LIetL~kspl~eLS~~dL----~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~ 427 (513)
.|=.++..+|++.++. ..++...+ .+-+.++.||.++---+.+|..|.+-..+..+-+
T Consensus 48 e~Ek~i~~~i~e~~~~--~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~ 109 (207)
T PF05010_consen 48 EYEKTIAQMIEEKQKQ--KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHHHHHHhh--HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4666777777776655 35555544 4455677788888888899999998887766543
No 173
>PHA03158 hypothetical protein; Provisional
Probab=53.34 E-value=1.3e+02 Score=30.55 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=44.5
Q ss_pred eEEeccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 010298 328 SVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 384 (513)
Q Consensus 328 tV~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~ksp 384 (513)
.|.||||+|+..-.++..+|-.--| -.+++++.=+...+.-||.--..-|++.
T Consensus 201 ~V~vnG~~V~y~sLpf~ERl~Rs~p----PWCv~t~~EK~~~~kQllka~kkc~~~s 253 (273)
T PHA03158 201 MVNINGKHVRFDDLPFMERIKRSGP----PWCIKTAKEKAAILKQLLKAAKKCCKNS 253 (273)
T ss_pred EEEecCEEEEeccCcHHHHHhccCC----CcEeecHHHhHHHHHHHHHHHHHHhcch
Confidence 5999999999999999999876655 3678889889888888888777777776
No 174
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=53.33 E-value=1.6e+02 Score=35.50 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=11.7
Q ss_pred HHHhcCcchhhhhhHHHHHH
Q 010298 402 DVESAQIDVDWLRNILNEIS 421 (513)
Q Consensus 402 dLe~aGfKVDWLekKLeEV~ 421 (513)
+|.++..|+.=|-.||+|+-
T Consensus 338 ~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHH
Confidence 45555666666666666554
No 175
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=53.26 E-value=1.7e+02 Score=32.90 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=5.4
Q ss_pred HHHHhhhhhhhc
Q 010298 492 IIQATQSKVTKF 503 (513)
Q Consensus 492 ~v~~~kSKV~kF 503 (513)
.|..++-.++.|
T Consensus 141 ll~Pl~e~l~~f 152 (475)
T PRK10361 141 LLSPLREQLDGF 152 (475)
T ss_pred HHhhHHHHHHHH
Confidence 344444444444
No 176
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=53.11 E-value=35 Score=31.82 Aligned_cols=8 Identities=63% Similarity=0.825 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 010298 417 LNEISEAI 424 (513)
Q Consensus 417 LeEV~Ear 424 (513)
+.||.+.+
T Consensus 5 ~kEi~~l~ 12 (121)
T PF03310_consen 5 IKEISELI 12 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 177
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=53.04 E-value=97 Score=24.09 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=30.5
Q ss_pred HHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010298 397 MAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVA 466 (513)
Q Consensus 397 ~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~ 466 (513)
...+..++..||-|+ ||.+...+.+. . ..........+....++|++++++|.+.+..+.
T Consensus 4 L~~I~~~r~lGfsL~-------eI~~~l~l~~~-~--~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 4 LQFIRRLRELGFSLE-------EIRELLELYDQ-G--DPPCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHTT--HH-------HHHHHHHHCCS-H--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-------HHHHHHhccCC-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888754 55544433332 1 111122334555556666666666665555443
No 178
>PRK14162 heat shock protein GrpE; Provisional
Probab=52.67 E-value=30 Score=34.20 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=29.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 465 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
+..+++++.++++++-++..+...+.+++.-=+....+|...+|+.+||
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 96 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVL 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555666666666666666666666666666666666665554
No 179
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=52.47 E-value=53 Score=26.60 Aligned_cols=52 Identities=31% Similarity=0.465 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--h-----HHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 446 STKKELESQMNELALKEKEVAG--L-----KESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 446 ~~kkELEe~leeL~qKekev~d--~-----~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
.+.++++....++...++.+.. + .+-|...+++|.+++.+...|...|..|+
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444444555443 1 34567889999999999999988887764
No 180
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=52.40 E-value=1.1e+02 Score=34.60 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=54.3
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 425 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 425 e~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
++.+...+-+++++..+..+...+.+|-+-.++++-.+=.+++++..|...-.|=.++|.+...++..+..++-=+
T Consensus 32 rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 32 RLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444566667777777777777777777777777777777888888887555555778888888877776666433
No 181
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.34 E-value=25 Score=34.07 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhhccccchh
Q 010298 476 KARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 509 (513)
Q Consensus 476 k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~ 509 (513)
++++-++..+...+.++..-=+....+|...+|+
T Consensus 40 ~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~ 73 (176)
T PRK14151 40 KDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFA 73 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344333333
No 182
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.29 E-value=1.9e+02 Score=31.75 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=42.8
Q ss_pred HHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHH
Q 010298 395 EMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELA-LKEKEVAGLKESVA 473 (513)
Q Consensus 395 ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~-qKekev~d~~erv~ 473 (513)
+..-.+..|.+..|+..=|+..|++..|.-. ..|..+|++|..+-+.++ |-.+...|+.+-++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elHq----------------~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~E 308 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELHQ----------------NEIYNLKQELASMEEKMAYQSYERARDIWEVME 308 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Confidence 3334444455555666666666665555442 345556666544433333 33566667777788
Q ss_pred HHHHHHHHHH
Q 010298 474 KTKARLSDLE 483 (513)
Q Consensus 474 e~k~RL~~LE 483 (513)
-+..|++.||
T Consensus 309 s~qtRisklE 318 (395)
T PF10267_consen 309 SCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHH
Confidence 8888888887
No 183
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=52.17 E-value=2.9e+02 Score=35.86 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=103.6
Q ss_pred eEEeccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcch-hhhccHHHHHHHHHHHhHHHhc
Q 010298 328 SVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS-LMQMTKAKVKEMMAVLKDVESA 406 (513)
Q Consensus 328 tV~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~ksp-l~eLS~~dL~ea~~~L~dLe~a 406 (513)
.|++++|.+++....-...+-+.|++.-+++ -+..+-|--=++.+-+.|.... -..+...+|..+.+.|.-+.+-
T Consensus 20 ~V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~----eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~ 95 (1822)
T KOG4674|consen 20 LVDVDVFKKLPKKSKDFESLKDEDGKTEVNH----EQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSE 95 (1822)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4889999999988888888888888776655 3334445555667777776554 2456778899999999999999
Q ss_pred CcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------
Q 010298 407 QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL------- 479 (513)
Q Consensus 407 GfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL------- 479 (513)
.-++-|.-.+++-+.+...- .-..+..+|......++.++.||+....+.....++++.....+.++..|+
T Consensus 96 ~~~l~~~~~~~~~~~~~l~~--~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~ 173 (1822)
T KOG4674|consen 96 RSNLSWEIDALKLENSQLRR--AKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSED 173 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777766544421 123333556666667777777777665555555555554444444444444
Q ss_pred HHHHHhhhhHHH
Q 010298 480 SDLELESNRLEQ 491 (513)
Q Consensus 480 ~~LE~ess~L~k 491 (513)
+.++.+..+|.|
T Consensus 174 vs~q~k~~rl~Q 185 (1822)
T KOG4674|consen 174 VSSQLKEERLEQ 185 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 444445555544
No 184
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.11 E-value=1.5e+02 Score=32.14 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 010298 471 SVAKTKARLSDLEL 484 (513)
Q Consensus 471 rv~e~k~RL~~LE~ 484 (513)
++.+..+.|.+++.
T Consensus 84 ~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 84 ELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 185
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.70 E-value=1e+02 Score=30.70 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhHH
Q 010298 391 AKVKEMMAVLKDV 403 (513)
Q Consensus 391 ~dL~ea~~~L~dL 403 (513)
+.|..+...|..|
T Consensus 93 ~rlp~le~el~~l 105 (206)
T PRK10884 93 TRVPDLENQVKTL 105 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 186
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.67 E-value=60 Score=30.31 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=12.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 010298 461 KEKEVAGLKESVAKTKARLSDLEL 484 (513)
Q Consensus 461 Kekev~d~~erv~e~k~RL~~LE~ 484 (513)
...++..+++.+.++.+||..|..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555556555554
No 187
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.02 E-value=2.8e+02 Score=32.42 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhcch---hhhcc--HHHHHHHHHHHhHHHhcCc----chhhhhhHHHHHHHHHHhhhhhh
Q 010298 361 ESNSMRAYYLECLCSVVQELQSTS---LMQMT--KAKVKEMMAVLKDVESAQI----DVDWLRNILNEISEAIEFSTQHQ 431 (513)
Q Consensus 361 Ks~~lRs~YMn~Ll~LIetL~ksp---l~eLS--~~dL~ea~~~L~dLe~aGf----KVDWLekKLeEV~Eare~~~~~~ 431 (513)
.-..+...++++.-.+|+.....- +++|. +++|.+..+.|.+.-.-|. .-+=|+..|.-|.
T Consensus 40 ~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~---------- 109 (660)
T KOG4302|consen 40 KLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLK---------- 109 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHH----------
Confidence 445566666666666666655443 23322 3445555555555544444 1111222222221
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHHHhh-hhHHHH
Q 010298 432 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL---------------KESVAKTKARLSDLELES-NRLEQI 492 (513)
Q Consensus 432 ~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~---------------~erv~e~k~RL~~LE~es-s~L~k~ 492 (513)
..-+..+....+++.|+.+++..+.+.+.+++.- -+++.+++++|.+|+.+. .+|++.
T Consensus 110 ---~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv 183 (660)
T KOG4302|consen 110 ---PYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKV 183 (660)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223333344455555555555555544431 278889999999999554 455443
No 188
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.80 E-value=1.4e+02 Score=31.13 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhHHHHH
Q 010298 457 ELALKEKEVAGLKESVA 473 (513)
Q Consensus 457 eL~qKekev~d~~erv~ 473 (513)
++.+.++++++++++|.
T Consensus 81 eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 81 EIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 189
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=50.78 E-value=1.8e+02 Score=34.48 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=72.6
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHHHh
Q 010298 393 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK-----EKEVA 466 (513)
Q Consensus 393 L~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear-e~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qK-----ekev~ 466 (513)
...|..++.--+.|--.+.=|+..|+.+...+ -+=++..-++.+...|.+.++.++.|-|..+.+...+ ++.-.
T Consensus 9 ~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~ 88 (769)
T PF05911_consen 9 AKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKS 88 (769)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35577788888888888999999999987655 3334567788888888888888877766665554332 33333
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 467 GLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
++..++.+...+|..+..+.+.|...|
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKAL 115 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 567788888888888888877776544
No 190
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=50.68 E-value=1.2e+02 Score=29.81 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHH
Q 010298 438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 490 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~ 490 (513)
..+...++....+|+.++++|..+...+.++..+...++.+-..|+.+..+..
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667666666666666666655555556655555555555443
No 191
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=50.53 E-value=61 Score=27.61 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=8.8
Q ss_pred HhcCcchhhhhhHHHHHHHHH
Q 010298 404 ESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 404 e~aGfKVDWLekKLeEV~Ear 424 (513)
+++--.++-|+.||.....+.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i 44 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAI 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333
No 192
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.49 E-value=3e+02 Score=30.92 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhh
Q 010298 476 KARLSDLELESNRLEQIIQATQSK 499 (513)
Q Consensus 476 k~RL~~LE~ess~L~k~v~~~kSK 499 (513)
.++|..|+.-..+|...+..+-.+
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555444433
No 193
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=50.34 E-value=14 Score=38.52 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=34.0
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 426 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 426 ~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
.+|-.-++++.+++.++.-..+-+|-+|.+++-.|++||-+|
T Consensus 30 nYDNDPeMK~Vme~F~rqTsQRF~EYdErm~~kRqkcKEqcD 71 (299)
T PF02009_consen 30 NYDNDPEMKSVMENFDRQTSQRFEEYDERMQEKRQKCKEQCD 71 (299)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 345556677777888888888888899999999999999988
No 194
>PRK14163 heat shock protein GrpE; Provisional
Probab=50.13 E-value=31 Score=34.66 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
++.+++++|-++..+...+.+++.-=+..+.+|....|+-+|
T Consensus 55 e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~L 96 (214)
T PRK14163 55 ALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSEL 96 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555554444444
No 195
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=49.56 E-value=2e+02 Score=26.04 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 368 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 368 ~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
.||..++.++......+...++++.-......+.+|.. |.+.|++.++-
T Consensus 20 ~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~--~e~~~~k~q~~ 68 (139)
T PF05615_consen 20 RLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQ--FEFSILKSQLI 68 (139)
T ss_pred HHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 35566666665555444233334444445555555553 55566666554
No 196
>PLN02939 transferase, transferring glycosyl groups
Probab=49.52 E-value=2.5e+02 Score=34.24 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=66.7
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH------------hhhhhhhHHHHHHhh
Q 010298 373 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE------------FSTQHQTIDAAKANC 440 (513)
Q Consensus 373 Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare------------~~~~~~~le~eKd~~ 440 (513)
++.=-+.||..- ++=+-.|++.+..++.-...++.++-|+..|+.+....- +......++++--..
T Consensus 161 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (977)
T PLN02939 161 ILTEKEALQGKI--NILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLL 238 (977)
T ss_pred HHHHHHHHHhhH--HHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHH
Confidence 333334454433 455667888888888889999999999988887654321 111223333332222
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHH-HHHhhhhhhhc
Q 010298 441 VNLLESTKKELE---SQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI-IQATQSKVTKF 503 (513)
Q Consensus 441 e~~~e~~kkELE---e~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~-v~~~kSKV~kF 503 (513)
...++.+|.+|. +.-+-+...+||-.-+.+-+.++..||.......++|+-. +.+++-||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENL 305 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHH
Confidence 233333333332 2222344444444444455555555555555544444221 23455555544
No 197
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.45 E-value=4.2e+02 Score=33.48 Aligned_cols=16 Identities=13% Similarity=0.163 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHhHHH
Q 010298 389 TKAKVKEMMAVLKDVE 404 (513)
Q Consensus 389 S~~dL~ea~~~L~dLe 404 (513)
.+.-+..|-..|.+|+
T Consensus 1610 aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1610 AEKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556666666655
No 198
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.37 E-value=2.1e+02 Score=29.75 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=55.7
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH----------------hhhhhhhHHHHHHhhHHHHHHH
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE----------------FSTQHQTIDAAKANCVNLLEST 447 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare----------------~~~~~~~le~eKd~~e~~~e~~ 447 (513)
||..|.+.||.++.-..+-|...-.+.|-.++|+.....--. -..+...++++-+.....+|.-
T Consensus 111 PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~ 190 (257)
T cd07620 111 PLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQC 190 (257)
T ss_pred HHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 578999999999999999999888888888888864322100 0011113344444455566666
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 010298 448 KKELESQMNELALKEKEVAG 467 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d 467 (513)
+..++..|-.|..+|.+.+.
T Consensus 191 kd~~~a~Mynfl~kE~e~a~ 210 (257)
T cd07620 191 KDQYSADLYHFATKEDSYAN 210 (257)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 66677667677777776666
No 199
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.28 E-value=1e+02 Score=37.64 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
....+.+++.-+.+|-.+.++|.+-|..+.|++++|.
T Consensus 854 ~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~ 890 (1141)
T KOG0018|consen 854 KEDEINEVKKILRRLVKELTKLDKEITSIESKIERKE 890 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 4566778888999999999999999999999999884
No 200
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.07 E-value=1.9e+02 Score=25.51 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=29.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 463 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+.+.++..|++.+..++..|+.....|.+.+..+.++++..
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777778888888877777777777777776643
No 201
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=49.01 E-value=2.5e+02 Score=28.58 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.6
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
|++.+=+.||.++..+.+.|+..-+.+|--++|+.
T Consensus 123 PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~ 157 (229)
T cd07616 123 PLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677888888888888888888888777775
No 202
>PRK14156 heat shock protein GrpE; Provisional
Probab=48.86 E-value=69 Score=31.27 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=31.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 465 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
+..+++++.++++++-++..+..++.++..-=+....+|....|+-+||
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LL 84 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAIL 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666777777777777777777666666666666666665554
No 203
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=48.77 E-value=1.6e+02 Score=26.61 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHh
Q 010298 391 AKVKEMMAVLKDVES 405 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~ 405 (513)
.++..+..+|..|..
T Consensus 37 ~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 37 NELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHhhcc
Confidence 455566666666653
No 204
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.75 E-value=79 Score=36.59 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHHHH
Q 010298 362 SNSMRAYYLECLCSVVQ 378 (513)
Q Consensus 362 s~~lRs~YMn~Ll~LIe 378 (513)
|..+|..+|-+++-+|-
T Consensus 24 S~~~r~~w~~~~l~iil 40 (907)
T KOG2264|consen 24 SAFLRFIWFVFILYIIL 40 (907)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 55677777775555543
No 205
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=48.66 E-value=3.3e+02 Score=28.17 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010298 411 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL 468 (513)
Q Consensus 411 DWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~ 468 (513)
+-|-.|=+|+.+..++.-.++. ++..|..+..++|..=+++.|+++..+++
T Consensus 50 ~Ll~~kd~ef~~llkla~eq~k-------~e~~m~~Lea~VEkrD~~IQqLqk~LK~a 100 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQQK-------REQLMRTLEAHVEKRDEVIQQLQKNLKSA 100 (272)
T ss_pred HHHHhccHHHHHHHHHhHhHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455566666666655443333 45556666666666555666666666654
No 206
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.62 E-value=2e+02 Score=33.94 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
-.+...++++.+.|..-+-.--++||.+.--|-+.|..+|+
T Consensus 78 ~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 78 RKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555554
No 207
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.48 E-value=2.5e+02 Score=26.74 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=8.7
Q ss_pred hccHHHHHHHHHHHhHHHh
Q 010298 387 QMTKAKVKEMMAVLKDVES 405 (513)
Q Consensus 387 eLS~~dL~ea~~~L~dLe~ 405 (513)
.+|...=.-+..+|.++-.
T Consensus 15 Gft~~QAe~i~~~l~~~l~ 33 (177)
T PF07798_consen 15 GFTEEQAEAIMKALREVLN 33 (177)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 208
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=48.33 E-value=3.2e+02 Score=27.93 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 010298 362 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 425 (513)
Q Consensus 362 s~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare 425 (513)
-......|.++|+..|++|++.- ++..-. +..++. ..+.+||..|=+-+..+..
T Consensus 104 l~~q~~~y~~vL~~cl~~L~~li-~~~rl~-------~q~~~d--~~~~~~L~~kceam~lKLr 157 (238)
T PF14735_consen 104 LERQFATYYQVLLQCLQLLQKLI-EKHRLG-------TQAELD--KIKAEYLEAKCEAMILKLR 157 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhc-------chHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999998754 222211 112221 3567899888777765554
No 209
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.08 E-value=2.5e+02 Score=29.25 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 010298 391 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear 424 (513)
.||..+-..-++|++.|-.|-=|=.+=.++.+.|
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R 150 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKEVELREER 150 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHH
Confidence 4555555555566666655533333322444444
No 210
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.05 E-value=3.4e+02 Score=28.18 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010298 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 483 (513)
Q Consensus 439 ~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE 483 (513)
.+++.+...++|||-+...+..+..|+.+.++-|.+-++-|....
T Consensus 90 ~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~ 134 (246)
T KOG4657|consen 90 GIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAK 134 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 345556666778888877777777777776666666555443333
No 211
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.02 E-value=4.5e+02 Score=29.59 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh--hhhHHHHHHHHH
Q 010298 369 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW--LRNILNEISEAI 424 (513)
Q Consensus 369 YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDW--LekKLeEV~Ear 424 (513)
+|+-|=.|+.+|. .-=.+.|.+.......|+..||.+.= +...|.++.+..
T Consensus 209 ~~e~IP~l~~~l~-----~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l 261 (560)
T PF06160_consen 209 IMEDIPKLYKELQ-----KEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQL 261 (560)
T ss_pred HHHHhHHHHHHHH-----HHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Confidence 3444444444443 33347788888888999999998886 555665555444
No 212
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=48.01 E-value=3.3e+02 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=14.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 462 EKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~e 485 (513)
.+...|+.|-++.|..||+.||+-
T Consensus 345 yERaRdIqEalEscqtrisKlEl~ 368 (455)
T KOG3850|consen 345 YERARDIQEALESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777777653
No 213
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=48.00 E-value=2.8e+02 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
|.+..+....+|.+||.++... +|+.+-.|
T Consensus 187 ~~~~~~~~~~~~Q~lEe~Ri~~------lk~~l~~~ 216 (236)
T cd07651 187 WNREWKAALDDFQDLEEERIQF------LKSNCWTF 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 6777778888888888876554 55555444
No 214
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=47.99 E-value=97 Score=27.75 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=19.5
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhhh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVDWL 413 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVDWL 413 (513)
-+..+.++|..+.-+ ..|..+||-|+=+
T Consensus 36 ~R~Y~~~~l~~l~~I-~~lr~~G~sL~eI 63 (126)
T cd04785 36 YRLYGAAHVERLRFI-RRARDLGFSLEEI 63 (126)
T ss_pred ccccCHHHHHHHHHH-HHHHHCCCCHHHH
Confidence 366788888766554 4589999986533
No 215
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=47.77 E-value=2.1e+02 Score=26.64 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=31.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
.+.+.++.+|++-+.-|+..|+..-.++.+.|..+++++.+-
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677888888888888888888888888888887654
No 216
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.63 E-value=3e+02 Score=36.00 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
++.....+++.++.+.++..+|.++.+-|.....-++++++...++..-++
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666667777777677766666555555555555555555544443
No 217
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=47.41 E-value=2.2e+02 Score=35.72 Aligned_cols=112 Identities=22% Similarity=0.280 Sum_probs=63.9
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHH----HHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHH
Q 010298 392 KVKEMMAVLKDVESAQIDVDWLRNILNE----ISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQ---MNELALKEKE 464 (513)
Q Consensus 392 dL~ea~~~L~dLe~aGfKVDWLekKLeE----V~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~---leeL~qKeke 464 (513)
++..+...+.|++..+-+.+=|...|.- +.--.++.+.......+.+..+..++...++...+ +-.|...-.+
T Consensus 786 ~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e 865 (1294)
T KOG0962|consen 786 DVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNE 865 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655555543 22222333333333333344455555554443333 2344444455
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 465 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
.++...++..--+++.+|+..-.+|..-+..+.|||...
T Consensus 866 ~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~ 904 (1294)
T KOG0962|consen 866 LKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKEL 904 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 556666777777888888888888888888888887654
No 218
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=47.21 E-value=2.3e+02 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=33.2
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHH
Q 010298 383 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEI 420 (513)
Q Consensus 383 spl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV 420 (513)
.||+.+-+.+|.++...-+-|+..-+.+|-.+.|+...
T Consensus 110 ~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka 147 (244)
T cd07595 110 SPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAA 147 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 45678888999999999999999999999999999754
No 219
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.19 E-value=2.1e+02 Score=34.95 Aligned_cols=36 Identities=6% Similarity=0.191 Sum_probs=23.1
Q ss_pred hHHHhcCcch---hhhhhHHHHHHHHHHhhhhhhhHHHH
Q 010298 401 KDVESAQIDV---DWLRNILNEISEAIEFSTQHQTIDAA 436 (513)
Q Consensus 401 ~dLe~aGfKV---DWLekKLeEV~Eare~~~~~~~le~e 436 (513)
.+|.+.|++- .=|++++..+....+.+.++.....+
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~e 799 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIE 799 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5688888865 45567777666666666555554444
No 220
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.18 E-value=2.8e+02 Score=32.67 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=14.1
Q ss_pred eccEEeecchHHHHHHHHhHcccc
Q 010298 331 VGKYHVRASISSILQSIISRYGDI 354 (513)
Q Consensus 331 VnGFqVl~Sqv~iV~~IFeKHPDI 354 (513)
-+.+-+..++-.-+..++..++.+
T Consensus 439 ~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 439 RGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred CCCEEEEECChHHHHHHHhcCCCe
Confidence 344566666666666666655543
No 221
>PRK14144 heat shock protein GrpE; Provisional
Probab=46.96 E-value=40 Score=33.57 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=36.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
++++.++++++.++++++.++..+..++.+++.-=+....+|...+|+.+||
T Consensus 51 ~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 102 (199)
T PRK14144 51 EEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALL 102 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445556667778888888888887777777777777777777776665
No 222
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.71 E-value=2.1e+02 Score=33.28 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=5.9
Q ss_pred HHHHHHHhHcccc
Q 010298 342 SILQSIISRYGDI 354 (513)
Q Consensus 342 ~iV~~IFeKHPDI 354 (513)
+.+.+|=.+-|++
T Consensus 359 ~kl~~vEr~~~~~ 371 (652)
T COG2433 359 PKLEKVERKLPEL 371 (652)
T ss_pred HHHHHHHHhcccc
Confidence 3444444444444
No 223
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=46.71 E-value=3.2e+02 Score=27.46 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-----cCcchhhhhhHHHHHHH
Q 010298 362 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-----AQIDVDWLRNILNEISE 422 (513)
Q Consensus 362 s~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~-----aGfKVDWLekKLeEV~E 422 (513)
...+-..+++.+..+++.+...+-..+...-.......+.+|.. ..+. .|+.+.|.++..
T Consensus 181 ~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~i~~L~~d~~~~~~i~-~~~~~~l~~~~~ 245 (367)
T PF04286_consen 181 LDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLRELIERLLTDPELREKIE-ELKDKLLSELIL 245 (367)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhhhhhHH
Confidence 45555667777777777777444345555444444455555554 2232 555555555543
No 224
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.69 E-value=1.4e+02 Score=32.22 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=10.9
Q ss_pred CcchhhhhhHHHHHHHHH
Q 010298 407 QIDVDWLRNILNEISEAI 424 (513)
Q Consensus 407 GfKVDWLekKLeEV~Ear 424 (513)
|+....|+.+|.++.+..
T Consensus 326 g~~~~~l~~~~~~l~~~~ 343 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEEL 343 (451)
T ss_pred ecCcHHHHHHHHHHHHHH
Confidence 666566666666555444
No 225
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.66 E-value=65 Score=36.03 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSK 499 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSK 499 (513)
+..+...+|.+||.+...|...+..++++
T Consensus 98 q~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 44456666666666666666555444443
No 226
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.66 E-value=1.1e+02 Score=29.34 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 417 LNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 417 LeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
-+++....+.+.+|+....+...++..+..+...+...+..|...++++..
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666655555555555555555555555555555544444
No 227
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=46.31 E-value=3e+02 Score=27.06 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHhh-hHHHHHHHHHHHHHHHHhhhhH
Q 010298 440 CVNLLESTKKELESQMNE-LALKEKEVAG-LKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 440 ~e~~~e~~kkELEe~lee-L~qKekev~d-~~erv~e~k~RL~~LE~ess~L 489 (513)
.++.....+.+.+...++ +.+..++... ...+|.+|.+|+.+|..+...|
T Consensus 53 Le~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 53 LEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444454444444 2333233333 4557778888888887776665
No 228
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=46.21 E-value=2.8e+02 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=12.0
Q ss_pred chhhhhhHHHHHHHHH-HhhhhhhhHH
Q 010298 409 DVDWLRNILNEISEAI-EFSTQHQTID 434 (513)
Q Consensus 409 KVDWLekKLeEV~Ear-e~~~~~~~le 434 (513)
.++.|++-|++|.... +.++....++
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565555322 3344444433
No 229
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.20 E-value=2.3e+02 Score=31.99 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=8.3
Q ss_pred eecchHHHHHHHHh
Q 010298 336 VRASISSILQSIIS 349 (513)
Q Consensus 336 Vl~Sqv~iV~~IFe 349 (513)
.+-||+++=+..++
T Consensus 325 ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE 338 (493)
T ss_pred hhhhhhhHHHHHHH
Confidence 56666666555555
No 230
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=46.14 E-value=82 Score=30.05 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhcch
Q 010298 368 YYLECLCSVVQELQSTS 384 (513)
Q Consensus 368 ~YMn~Ll~LIetL~ksp 384 (513)
.+|-..+.|+..|...|
T Consensus 83 sll~nfleLl~~l~~~P 99 (162)
T PF05983_consen 83 SLLLNFLELLDILSKNP 99 (162)
T ss_dssp HHHHHHHHHTTSS---C
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34444455666666666
No 231
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=45.92 E-value=1.7e+02 Score=29.76 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=29.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 437 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 437 Kd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
++...++||...++.+...+++.+-++++.+. +.+.+.-|....-..-+.+.-++||...
T Consensus 131 ResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~------l~d~~~tL~~~~~~~p~~~q~~r~~~~~ 190 (223)
T KOG0570|consen 131 RESLIMLMERQIEQRSDIVEDFKKHLRQVREV------LDDQFQTLRGKLPAPPQSSQLTRVKLQD 190 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhcccCCCCcchhhhhhhhccc
Confidence 35556666665555555555555544444441 1122233333333344455567777655
No 232
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=45.78 E-value=1e+02 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
.-.++..||.++...-..|..++..+-+|++-
T Consensus 66 ~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ei 97 (141)
T PF13874_consen 66 HDLETSARLEEARRRHQELSHRLLRVLRKQEI 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555553
No 233
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=45.64 E-value=2.9e+02 Score=28.83 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=73.3
Q ss_pred EEeecchHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhh
Q 010298 334 YHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 413 (513)
Q Consensus 334 FqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWL 413 (513)
|.-..-|+..|-+.+-+.|. .++..|=++. -++..|+-- +.+|..+.+...+|+ +-||-|
T Consensus 94 F~~q~~qvNaWDr~LI~nge----------kI~~Ly~e~~--~vk~~qkrL-----dq~L~~I~sqQ~ELE---~~L~~l 153 (254)
T KOG2196|consen 94 FLQQATQVNAWDRTLIENGE----------KISGLYNEVV--KVKLDQKRL-----DQELEFILSQQQELE---DLLDPL 153 (254)
T ss_pred HHHHHHHHhHHHHHHHhCcH----------HHHHHHHHHH--HHHhHHHHH-----HHHHHHHHHHHHHHH---HHHHHH
Confidence 34445566666666665553 3334443322 223333222 456777777888887 668888
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHH
Q 010298 414 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV-------------AGLKESVAKTKARLS 480 (513)
Q Consensus 414 ekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev-------------~d~~erv~e~k~RL~ 480 (513)
+++|+...--+ + -+.+++++...-..++.....|..+=++|.+.-+++ ..+..-+.++...|.
T Consensus 154 E~k~~~~~g~~-~---~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLq 229 (254)
T KOG2196|consen 154 ETKLELQSGHT-Y---LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQ 229 (254)
T ss_pred HHHHhccccch-h---hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHH
Confidence 88887632211 0 122223322222223333333333323333332222 222233457788888
Q ss_pred HHHHhhhhHHHHHHHhhh
Q 010298 481 DLELESNRLEQIIQATQS 498 (513)
Q Consensus 481 ~LE~ess~L~k~v~~~kS 498 (513)
-|+.-++-|++.+..++-
T Consensus 230 wl~d~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 230 WLDDNSTQLEKKLDKIKK 247 (254)
T ss_pred HHHhhhHHHHHHHHHHHh
Confidence 899999999888887764
No 234
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=45.57 E-value=3.1e+02 Score=29.51 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcc---hhhhhhHHHHHHHHHHhhhhhhhHHHHH
Q 010298 369 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID---VDWLRNILNEISEAIEFSTQHQTIDAAK 437 (513)
Q Consensus 369 YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfK---VDWLekKLeEV~Eare~~~~~~~le~eK 437 (513)
||+.|-.+|...+... +--.+.|.++...+ ++.+.++ |.=|..+++.+.+..+-+..--++++..
T Consensus 84 ~~~~l~~~v~d~~rri--~~~kerL~e~~ee~--~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq 151 (319)
T KOG0796|consen 84 ALEILERFVADVDRRI--EKAKERLAETVEER--SEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQ 151 (319)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 8999999999988773 22334444443222 2333343 6666677776666666555555555543
No 235
>PRK14157 heat shock protein GrpE; Provisional
Probab=45.54 E-value=34 Score=34.76 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhh
Q 010298 476 KARLSDLELESNRLEQIIQATQSKVTKFSQKSLAD 510 (513)
Q Consensus 476 k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D 510 (513)
+++|-++..+.....++..-=+..+.+|-...|+.
T Consensus 97 kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~ 131 (227)
T PRK14157 97 LEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLT 131 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333344444443333333
No 236
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=45.50 E-value=3.9e+02 Score=28.62 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
...+-+.+.+||.+|+-+..=|.|-+.++..|++.
T Consensus 212 ~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 212 YIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677999999999999999999999999863
No 237
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.26 E-value=1.6e+02 Score=25.54 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
+++.+..++.+++.....+.+.+..++.++
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444443
No 238
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=45.16 E-value=4.4e+02 Score=28.87 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=16.1
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhHHHhcC
Q 010298 375 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ 407 (513)
Q Consensus 375 ~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aG 407 (513)
.|+..+=-.|+..+=+..=..+...|.+.+.+.
T Consensus 16 ~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~ 48 (445)
T PRK13428 16 FLVWRFVVPPVRRLMAARQDTVRQQLAESATAA 48 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555555555555555555543
No 239
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.15 E-value=3.8e+02 Score=30.96 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh-hhhhhhHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 010298 391 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF-STQHQTIDAAKANCVNLLEST---KKELESQMNELALKEKEVA 466 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~-~~~~~~le~eKd~~e~~~e~~---kkELEe~leeL~qKekev~ 466 (513)
+|+....+.+..|++..= =+.++|+.+.+..+. -.+-+.+.++-+.+...++.. -.+++.|..|..+...++.
T Consensus 273 ~D~nK~~~y~~~~~~k~~---~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~ 349 (581)
T KOG0995|consen 273 DDVNKFQAYVSQMKSKKQ---HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN 349 (581)
T ss_pred hHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665432 223445444433310 011222222222222222221 2334555555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q 010298 467 GLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~ 488 (513)
++...+..+...+-+++++..+
T Consensus 350 ~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 350 KIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555555555555544443
No 240
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.85 E-value=3.4e+02 Score=31.00 Aligned_cols=62 Identities=29% Similarity=0.459 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHH----------hhHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010298 418 NEISEAIEFSTQHQTIDAAKA----------NCVNLLESTKKE----LESQMNELALKEKEVAGLKESVAKTKARL 479 (513)
Q Consensus 418 eEV~Eare~~~~~~~le~eKd----------~~e~~~e~~kkE----LEe~leeL~qKekev~d~~erv~e~k~RL 479 (513)
+.|.+|+++...-+++++++. +....|+.++++ |+.+-.+...+|+|++-+++++-+++..|
T Consensus 285 e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445677777777777777753 222233333332 45555566666777766666666655443
No 241
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.72 E-value=1e+02 Score=35.44 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHHH
Q 010298 410 VDWLRNILNEISEAI 424 (513)
Q Consensus 410 VDWLekKLeEV~Ear 424 (513)
++||+++|.++...-
T Consensus 269 ~~fL~~qL~~l~~~L 283 (726)
T PRK09841 269 LEFLQRQLPEVRSEL 283 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478888887776444
No 242
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=44.36 E-value=1.2e+02 Score=27.31 Aligned_cols=59 Identities=12% Similarity=0.279 Sum_probs=32.6
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 010298 353 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 415 (513)
Q Consensus 353 DIAsnf~lKs~~lRs~YMn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLek 415 (513)
++|.-+.+.-..+| +|-.. +|+..- ..+--+..+.+||. ....+..|+++||-|.=.+.
T Consensus 5 e~a~~~gvs~~tlR-yYe~~--GLl~~~~r~~~g~R~Y~~~~~~-~l~~I~~lr~~G~sL~eI~~ 65 (127)
T cd01108 5 EAAKLTGLSAKMIR-YYEEI--GLIPPPSRSDNGYRVYNQRDIE-ELRFIRRARDLGFSLEEIRE 65 (127)
T ss_pred HHHHHHCcCHHHHH-HHHHC--CCCCCCCcCCCCceecCHHHHH-HHHHHHHHHHcCCCHHHHHH
Confidence 44444445444455 44333 333211 12234678888888 45566788899998754443
No 243
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.33 E-value=5e+02 Score=29.89 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHhh
Q 010298 19 YHECGMACLEKIAQG 33 (513)
Q Consensus 19 fHeC~~~C~~ki~~~ 33 (513)
+-++.-.|+..|-..
T Consensus 34 ~v~~~~~cL~~I~p~ 48 (594)
T PF05667_consen 34 LVEAVVRCLRVIDPS 48 (594)
T ss_pred HHHHHHHHHHHhCcc
Confidence 345666777777654
No 244
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=43.71 E-value=1.4e+02 Score=27.49 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010298 418 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 477 (513)
Q Consensus 418 eEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~ 477 (513)
+||.......+.......+....+..+.++....+..|+=|.+|.+++.+++..|.++|+
T Consensus 51 ~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 51 EEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
No 245
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=43.70 E-value=49 Score=35.68 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=27.1
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 427 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 427 ~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
+|-.-++++..++-++.--.+=+|.+|.+++-+|++||-+|
T Consensus 54 YDNDPeMK~Vm~nF~rqTsQRF~EYdERM~~kRqKcKeqCD 94 (353)
T TIGR01477 54 YDNDPEMKSVMEQFDRQTSQRFEEYDERMQEKRQKCKEQCD 94 (353)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHhHHHHHHHhhhhhHHhhc
Confidence 33344455555655666666667777778888888888777
No 246
>PLN02320 seryl-tRNA synthetase
Probab=43.67 E-value=1.5e+02 Score=33.38 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 010298 471 SVAKTKARLSDLELE 485 (513)
Q Consensus 471 rv~e~k~RL~~LE~e 485 (513)
++.++.+.|.+++.+
T Consensus 145 ~i~~le~~~~~~~~~ 159 (502)
T PLN02320 145 GLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 247
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.63 E-value=1.7e+02 Score=33.98 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHh
Q 010298 370 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLK 401 (513)
Q Consensus 370 Mn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~ 401 (513)
=|+|+.=-|.|...++-+|=+.||..-...|.
T Consensus 304 eNLilENsqLLetKNALNiVKNDLIakVDeL~ 335 (832)
T KOG2077|consen 304 ENLILENSQLLETKNALNIVKNDLIAKVDELT 335 (832)
T ss_pred HHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 35555555555544444555555544444333
No 248
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=43.63 E-value=2.9e+02 Score=26.05 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=4.7
Q ss_pred CcchhhhhhHHH
Q 010298 407 QIDVDWLRNILN 418 (513)
Q Consensus 407 GfKVDWLekKLe 418 (513)
.+..-=|..|++
T Consensus 48 kien~~l~~kIe 59 (177)
T PF13870_consen 48 KIENQQLNEKIE 59 (177)
T ss_pred HHHHHHHHHHHH
Confidence 333333444443
No 249
>PRK14141 heat shock protein GrpE; Provisional
Probab=43.53 E-value=38 Score=33.84 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010298 446 STKKELESQMNELALKEKEVAGLKESVA 473 (513)
Q Consensus 446 ~~kkELEe~leeL~qKekev~d~~erv~ 473 (513)
.+++++++....+.+...+...+|.|..
T Consensus 42 ~le~e~~elkd~~lR~~Ae~eN~RKR~~ 69 (209)
T PRK14141 42 ALKAENAELKDRMLRLAAEMENLRKRTQ 69 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444443
No 250
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=43.50 E-value=2.2e+02 Score=25.51 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=32.6
Q ss_pred cccccCcccchhHHHHHHHHHHHHHH-HH-hcchhhhccHHHHHHHHHHHhHHHhcCcchhhh
Q 010298 353 DIAANCNLESNSMRAYYLECLCSVVQ-EL-QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWL 413 (513)
Q Consensus 353 DIAsnf~lKs~~lRs~YMn~Ll~LIe-tL-~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWL 413 (513)
++|.-+.+.-..+| +|-. .+||. .- ..+.-+..+.++|..+. .+..|+..||.++=+
T Consensus 4 e~a~~~gvs~~tlR-~Ye~--~GLl~~~~r~~~g~R~Y~~~~l~~l~-~I~~l~~~G~sl~eI 62 (124)
T TIGR02051 4 ELAKAAGVNVETIR-YYER--KGLLPEPDRPEGGYRRYPEETVKRLR-FIKRAQELGFSLEEI 62 (124)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCCEeECHHHHHHHH-HHHHHHHCCCCHHHH
Confidence 44555555555554 3422 23332 11 12334667888888774 777799999986533
No 251
>PRK14146 heat shock protein GrpE; Provisional
Probab=43.20 E-value=43 Score=33.57 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=37.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 463 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
.++.++++++.++++++-++..+...+.++..-=+....+|....|+-+||
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lL 111 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFL 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555667777778888888888887777777777777777777776665
No 252
>PRK14145 heat shock protein GrpE; Provisional
Probab=42.97 E-value=51 Score=32.71 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=31.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 465 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
+.++++++.++++++-++..+.....+++.-=+....+|...+|+-+||
T Consensus 54 l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LL 102 (196)
T PRK14145 54 LQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELL 102 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667777777777777676666666677776666665554
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.85 E-value=3.5e+02 Score=26.89 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=22.1
Q ss_pred hHHHHHHH-HHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010298 415 NILNEISE-AIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 465 (513)
Q Consensus 415 kKLeEV~E-are~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev 465 (513)
++.+++.+ ..++...+..+..+.++.+...+.+.+.+..+.+++..++.++
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 2244445555555555544444444444433333333333333
No 254
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=1.5e+02 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
+|.+..+++.+ ||.+|.+.|++. +++.+....+
T Consensus 116 ~l~~lk~q~q~---ri~q~~~qlge~-~esk~~~~Al 148 (168)
T KOG3192|consen 116 DLKQLKSQNQE---RIAQCKQQLGEA-FESKKYDEAL 148 (168)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHH-HhhccHHHHH
Confidence 35555555544 888888888875 3444444333
No 255
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.60 E-value=1.9e+02 Score=25.65 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010298 440 CVNLLESTKKELESQ--MNELALKEKEVAGLKESVAKTKARLSDL 482 (513)
Q Consensus 440 ~e~~~e~~kkELEe~--leeL~qKekev~d~~erv~e~k~RL~~L 482 (513)
.++++.....+|+-+ -.++...+-++.+.+-++.++.++|..+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555555555444 3455555555555444555555555444
No 256
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.57 E-value=5.6e+02 Score=29.12 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhh
Q 010298 363 NSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANC 440 (513)
Q Consensus 363 ~~lRs~YMn~Ll~LIetL~--kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~ 440 (513)
-.++-+.|-+|+=|---+| -.....-++.-+.+|...|..|..|--.|.=|.++|+...+.- ..+..+|-++
T Consensus 212 n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~------rnvavek~~l 285 (575)
T KOG4403|consen 212 NWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQ------RNVAVEKLDL 285 (575)
T ss_pred chhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hchhhhhhhH
Confidence 3445555544433322233 2223456788899999999999988888888888888766552 2333344444
Q ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHhh
Q 010298 441 VNLLES---------------TKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 441 e~~~e~---------------~kkELEe~leeL~qKekev~d 467 (513)
++.+.+ .++|||.....|...|+|..+
T Consensus 286 erkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 286 ERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444432 244555555555555555544
No 257
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.53 E-value=1.6e+02 Score=25.51 Aligned_cols=26 Identities=0% Similarity=-0.027 Sum_probs=20.8
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhh
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDW 412 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDW 412 (513)
...++.++ +....+..|++.||-|+=
T Consensus 35 r~Y~~~~~-~~l~~I~~lr~~G~sL~e 60 (107)
T cd04777 35 YFFDEKCQ-DDLEFILELKGLGFSLIE 60 (107)
T ss_pred cccCHHHH-HHHHHHHHHHHCCCCHHH
Confidence 56778888 677888999999998653
No 258
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=42.49 E-value=2.1e+02 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.5
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
-+-.+.+||..+.-+ ..|..+||-+.
T Consensus 36 ~R~Y~~~~l~~l~~I-~~lr~~G~~l~ 61 (107)
T cd01111 36 YGLFDDCALQRLRFV-RAAFEAGIGLD 61 (107)
T ss_pred CeecCHHHHHHHHHH-HHHHHcCCCHH
Confidence 467888888776655 67999999643
No 259
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=42.17 E-value=5.6e+02 Score=29.55 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.7
Q ss_pred hhHHHhhhhc
Q 010298 79 CGERCFKRNG 88 (513)
Q Consensus 79 C~e~C~~~i~ 88 (513)
+...|+..|.
T Consensus 37 ~~~~cL~~I~ 46 (594)
T PF05667_consen 37 AVVRCLRVID 46 (594)
T ss_pred HHHHHHHHhC
Confidence 3444555554
No 260
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=42.09 E-value=2.4e+02 Score=24.68 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=37.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010298 430 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 495 (513)
Q Consensus 430 ~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~ 495 (513)
|..+...-.+....++. |+.+.++|....+++.++..+|.++.+=..+|...+.+|+..|..
T Consensus 37 Y~~~~~~~~~l~~~~~~----l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 37 YKKMKDIAAGLEKNLED----LNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444443444444443 444455666666666666667777777777777777777766653
No 261
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.99 E-value=1.4e+02 Score=26.90 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 010298 444 LESTKKELESQMN 456 (513)
Q Consensus 444 ~e~~kkELEe~le 456 (513)
|.++|+.|.+.++
T Consensus 24 ~~~LK~~~~~l~E 36 (107)
T PF06156_consen 24 LEELKKQLQELLE 36 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 262
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=41.98 E-value=1.1e+02 Score=25.26 Aligned_cols=15 Identities=7% Similarity=0.271 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 010298 471 SVAKTKARLSDLELE 485 (513)
Q Consensus 471 rv~e~k~RL~~LE~e 485 (513)
.+..+..+|.+++.-
T Consensus 35 ~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 35 DIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554443
No 263
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.73 E-value=7.7e+02 Score=30.52 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=10.6
Q ss_pred CcchhhhhhHHHHHHHHHHhh
Q 010298 407 QIDVDWLRNILNEISEAIEFS 427 (513)
Q Consensus 407 GfKVDWLekKLeEV~Eare~~ 427 (513)
+.+|.-|+.|++|+.-..+|+
T Consensus 331 Q~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 331 QQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444
No 264
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=41.63 E-value=4.6e+02 Score=27.89 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=9.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 010298 461 KEKEVAGLKESVAKTKARLSDLE 483 (513)
Q Consensus 461 Kekev~d~~erv~e~k~RL~~LE 483 (513)
.++...++...+..|..-|..++
T Consensus 341 le~~q~~l~~~l~~~~~~L~~ve 363 (388)
T PF04912_consen 341 LESQQSDLQSQLKKWEELLNKVE 363 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444
No 265
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=41.62 E-value=72 Score=26.49 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=30.0
Q ss_pred HHHHHHHHhHcccccccCc-c----------cchhHHH---HHHHHHHHHHHHH
Q 010298 341 SSILQSIISRYGDIAANCN-L----------ESNSMRA---YYLECLCSVVQEL 380 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~-l----------Ks~~lRs---~YMn~Ll~LIetL 380 (513)
..+..++|++||++..-|. + .|..++. .+|++|-.+|..|
T Consensus 21 ~~~f~~lF~~~P~~~~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l 74 (110)
T PF00042_consen 21 SEFFQRLFEEYPDYKKLFPKFKDIVPLEELKNNPEFKAHAQRVMEALDEAVDNL 74 (110)
T ss_dssp HHHHHHHHHHSGGGGGGGTTGTTTSSHHHHTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCHHHHhhcccccccchHHHHhccchHHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999998 4 3455655 5666777777766
No 266
>PRK14127 cell division protein GpsB; Provisional
Probab=41.61 E-value=1.5e+02 Score=27.13 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHh
Q 010298 474 KTKARLSDLELE 485 (513)
Q Consensus 474 e~k~RL~~LE~e 485 (513)
++-.||++||..
T Consensus 89 DiLKRls~LEk~ 100 (109)
T PRK14127 89 DILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHH
Confidence 456677776654
No 267
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.56 E-value=1.4e+02 Score=27.25 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 010298 424 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 471 (513)
Q Consensus 424 re~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~er 471 (513)
++++++...+++.-...-..+..+|+.|.+.++|=..++-|-.-+|++
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444455555555555555555444444443333
No 268
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=41.56 E-value=8.7 Score=42.33 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred ecchHHHHHHHHhHcccccccCccc--------------chhHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHH
Q 010298 337 RASISSILQSIISRYGDIAANCNLE--------------SNSMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMM 397 (513)
Q Consensus 337 l~Sqv~iV~~IFeKHPDIAsnf~lK--------------s~~lRs~YMn~Ll~LIetL~ksp-----l~eLS~~dL~ea~ 397 (513)
..-+-.+|++|++---|+...-... ...+...=|+-|...||+||++. |+++-.+||..|.
T Consensus 390 ~~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~ 469 (539)
T PF10243_consen 390 EEEHGGLVQKILETKKELEKSANSEEKEEKEQSLAASKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQ 469 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhcCHHHHHHHHHHHHHhhcccccccccccccchhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 3456678899988765554433332 23445566899999999999876 4555555555555
Q ss_pred HHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010298 398 AVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKA 477 (513)
Q Consensus 398 ~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~ 477 (513)
..|. .|-. |.+++ -+.|..++..-+ .-|+-...+|++++.+|+|-+.+|..+++
T Consensus 470 ~El~---------~W~~-------e~~~~---~~~l~~e~~~t~-------~~~~pl~~~L~ele~~I~~~~~~i~~~ka 523 (539)
T PF10243_consen 470 KELE---------MWRS-------EYRQH---AEALQEEQSITD-------EALEPLKAQLAELEQQIKDQQDKICAVKA 523 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---------HHHH-------HHHHH---HHHHHHHHhhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 2422 11111 111112211111 12333344566677788887778888877
Q ss_pred HHHHHHHhhh
Q 010298 478 RLSDLELESN 487 (513)
Q Consensus 478 RL~~LE~ess 487 (513)
.+-+=+....
T Consensus 524 ~Il~Ne~~i~ 533 (539)
T PF10243_consen 524 NILKNEEKIQ 533 (539)
T ss_dssp ----------
T ss_pred HHHhhHHHHH
Confidence 7655444433
No 269
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=41.49 E-value=2.3e+02 Score=32.37 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.1
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchhh--hhhHHH
Q 010298 387 QMTKAKVKEMMAVLKDVESAQIDVDW--LRNILN 418 (513)
Q Consensus 387 eLS~~dL~ea~~~L~dLe~aGfKVDW--LekKLe 418 (513)
.-|+.+|..++.+|. .||+-|| |++||.
T Consensus 187 s~~EkEvE~~F~~ls----L~f~~D~~TLe~R~~ 216 (538)
T PF05781_consen 187 SASEKEVEAEFLRLS----LGFKCDRFTLEKRLK 216 (538)
T ss_pred CCcHHHHHHHHHHHH----HHhhhhhhhHHHHHH
Confidence 338888888888874 6899999 456665
No 270
>PLN02678 seryl-tRNA synthetase
Probab=41.39 E-value=2.4e+02 Score=31.27 Aligned_cols=86 Identities=8% Similarity=0.042 Sum_probs=35.7
Q ss_pred HhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010298 400 LKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 479 (513)
Q Consensus 400 L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL 479 (513)
..-|..-|+.++++..-|.-=.+.+++..+...+..++....+.|..++.. . ++.....++++.+++++.++...|
T Consensus 19 ~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~-~---~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 19 RESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA-K---EDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-C---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555433333333334444444444444444333333221100 0 111122223444444555555555
Q ss_pred HHHHHhhhhH
Q 010298 480 SDLELESNRL 489 (513)
Q Consensus 480 ~~LE~ess~L 489 (513)
.+++.+...+
T Consensus 95 ~~~~~~l~~~ 104 (448)
T PLN02678 95 QEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 271
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=41.37 E-value=1.8e+02 Score=29.81 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=13.6
Q ss_pred HHHHhhhhhhhccccchhhhc
Q 010298 492 IIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 492 ~v~~~kSKV~kF~~kSl~D~l 512 (513)
.+..++..+++..-.+.+||.
T Consensus 198 ~l~~a~~~l~~~~I~AP~dG~ 218 (346)
T PRK10476 198 ALAIAELHLEDTTVRAPFDGR 218 (346)
T ss_pred HHHHHHHHhhcCEEECCCCcE
Confidence 344456666777777777775
No 272
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=41.30 E-value=4.6e+02 Score=32.51 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
+...+....|..++..+++.+|..+..+|.+-.++.+++...+..++
T Consensus 469 ~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elk 515 (1195)
T KOG4643|consen 469 LDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELK 515 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777788888888877777777765554443
No 273
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.21 E-value=4e+02 Score=29.83 Aligned_cols=71 Identities=18% Similarity=0.124 Sum_probs=42.2
Q ss_pred hhhHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHH------------HHHHHHHHHHHHHhhhhHHHHHH
Q 010298 430 HQTIDAAKANCVNLLES---TKKELESQMNELALKEKEVAGLKES------------VAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 430 ~~~le~eKd~~e~~~e~---~kkELEe~leeL~qKekev~d~~er------------v~e~k~RL~~LE~ess~L~k~v~ 494 (513)
|+++.++-+.+++..+. --+++|+..++|.+.+.+......+ ..+.-.+|..|.++...|+++..
T Consensus 154 ~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~ 233 (446)
T KOG4438|consen 154 YQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENAN 233 (446)
T ss_pred HHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444333 2445666666666555444332211 12235678888888888888888
Q ss_pred Hhhhhh
Q 010298 495 ATQSKV 500 (513)
Q Consensus 495 ~~kSKV 500 (513)
++++++
T Consensus 234 ~LktqI 239 (446)
T KOG4438|consen 234 CLKTQI 239 (446)
T ss_pred HHHHHH
Confidence 888865
No 274
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=41.20 E-value=4.4e+02 Score=27.49 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCc
Q 010298 265 GASPSKNGKDNKV 277 (513)
Q Consensus 265 ~~~~~~~~~~~~s 277 (513)
|.-|-..||++..
T Consensus 44 P~~p~~pgKvr~g 56 (247)
T KOG3976|consen 44 PPRPEYPGKVRLG 56 (247)
T ss_pred CCCCCCCcccccC
Confidence 4456666666654
No 275
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.17 E-value=2.2e+02 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.9
Q ss_pred HHHhhhHHHHHHHHHHH
Q 010298 463 KEVAGLKESVAKTKARL 479 (513)
Q Consensus 463 kev~d~~erv~e~k~RL 479 (513)
.+-..|.+|+..+-++|
T Consensus 53 ~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 53 QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444555554444
No 276
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=41.12 E-value=3.4e+02 Score=26.22 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHH
Q 010298 412 WLRNILNEISEAI 424 (513)
Q Consensus 412 WLekKLeEV~Ear 424 (513)
-.+.||-||+...
T Consensus 59 ~aR~rL~eVS~~f 71 (159)
T PF05384_consen 59 QARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHhhh
Confidence 3455666666554
No 277
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.96 E-value=1.5e+02 Score=30.70 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHhhhhHHHH
Q 010298 423 AIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK----ARLSDLELESNRLEQI 492 (513)
Q Consensus 423 are~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k----~RL~~LE~ess~L~k~ 492 (513)
...+...+++.+++...+.+.+ .+.+++....+++.++..|+.+...++..-+ .-...||.+...|.+.
T Consensus 32 ~~~~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~ 104 (247)
T COG3879 32 GVMLAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRML 104 (247)
T ss_pred HHHHHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 3344455666666655444555 5566666666666666666666666665555 3344445444444443
No 278
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.87 E-value=3.8e+02 Score=26.77 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=10.6
Q ss_pred hhhhccHHHHHHHHHHHhHHH
Q 010298 384 SLMQMTKAKVKEMMAVLKDVE 404 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe 404 (513)
+.+..-+.++.+|...|..+.
T Consensus 146 ~~~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 146 PQRQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555
No 279
>PRK14150 heat shock protein GrpE; Provisional
Probab=40.56 E-value=60 Score=31.89 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 474 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
++++++-++..+...+.++..--+....+|...+|+.+||
T Consensus 56 ~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL 95 (193)
T PRK14150 56 EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELL 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666655554
No 280
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=40.50 E-value=1.5e+02 Score=26.74 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=19.5
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
.-+-.+.++|..+.-+ ..|++.||-|.
T Consensus 35 gyR~Y~~~~l~~l~~I-~~lr~lG~sL~ 61 (127)
T TIGR02047 35 NYRVYTVGHVERLAFI-RNCRTLDMSLA 61 (127)
T ss_pred CCCcCCHHHHHHHHHH-HHHHHcCCCHH
Confidence 3467888888776554 45789999865
No 281
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=40.49 E-value=3.4e+02 Score=33.83 Aligned_cols=207 Identities=17% Similarity=0.215 Sum_probs=100.2
Q ss_pred cccccccccccCCCCCCCCCCCCCcccccccccccCCCCCcccccccccceEEeccEEeecc------------------
Q 010298 278 QAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAS------------------ 339 (513)
Q Consensus 278 ~~~~p~~~~~e~~Gk~~L~~~~eS~~fS~~~i~~~~~~~D~eE~~SvvsEtV~VnGFqVl~S------------------ 339 (513)
-|.||+.-.++ |+ .+..+.--.|||..+... +.... -=.||-|.|=
T Consensus 871 VALvP~kvt~d--gk--t~~g~dr~ift~vavkSp-------DFipr-----hEsGyAvePfl~MQt~Kl~~vkn~VEk~ 934 (1439)
T PF12252_consen 871 VALVPTKVTLD--GK--TSNGEDRYIFTFVAVKSP-------DFIPR-----HESGYAVEPFLRMQTAKLAEVKNAVEKA 934 (1439)
T ss_pred eeeeeeEEeec--Cc--cCCCCCceEEEEEEecCC-------CCCcc-----CCCcccccHHHHHHHHHHHHHHHHHHhh
Confidence 57788777776 77 555666677777654432 00000 0123333321
Q ss_pred -hHHHHHHHHhHcccccccCccc-chhHHHHHHHHHHHHH-HHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhH
Q 010298 340 -ISSILQSIISRYGDIAANCNLE-SNSMRAYYLECLCSVV-QELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNI 416 (513)
Q Consensus 340 -qv~iV~~IFeKHPDIAsnf~lK-s~~lRs~YMn~Ll~LI-etL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekK 416 (513)
+.+.+..||. |-..|..+ ...+.+.|-++|-.=| =-|++-- .-|-+.++..+..+|.-.=. +=.|-.=+
T Consensus 935 ~~~p~~~~ifd----l~~~~s~~~~s~is~~yKnFLne~ViPvLEeCl-~aL~~nn~~~L~kaLA~FP~---d~qWSaFN 1006 (1439)
T PF12252_consen 935 QEEPDLEGIFD----LQHRFSGVEDSKISQEYKNFLNEKVIPVLEECL-NALRENNMDMLQKALAAFPS---DKQWSAFN 1006 (1439)
T ss_pred hccchHHhHHH----HHHHhhhhhhccccHHHHHHHHhccHHHHHHHH-HHHHhcCHHHHHHHHHhCCC---cccchhcC
Confidence 1244555555 32333222 2445556666654322 2222221 33334444444444443322 22688888
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhHHHHHH----HHHHHHHHHHHHHHH--HHHH----hhhHHHHHHHHHHHHHHH---
Q 010298 417 LNEISEAIEFSTQHQTIDAAKANCVNLLES----TKKELESQMNELALK--EKEV----AGLKESVAKTKARLSDLE--- 483 (513)
Q Consensus 417 LeEV~Eare~~~~~~~le~eKd~~e~~~e~----~kkELEe~leeL~qK--ekev----~d~~erv~e~k~RL~~LE--- 483 (513)
++|...|+.-+|.-..+.++|-.++-+++= .|+.+..-|+.|.-. ++|| .++|+||..++..|.-|.
T Consensus 1007 s~EA~~AK~QMDaIKqmIekKv~L~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV 1086 (1439)
T PF12252_consen 1007 SEEARQAKAQMDAIKQMIEKKVVLQALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAV 1086 (1439)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 888888876555555555554333311111 033344444444321 2221 235667777776665554
Q ss_pred ---------HhhhhHHHHHHHhhhhhhhccccch
Q 010298 484 ---------LESNRLEQIIQATQSKVTKFSQKSL 508 (513)
Q Consensus 484 ---------~ess~L~k~v~~~kSKV~kF~~kSl 508 (513)
..+.+.+..|.++.-+|--|+.-.+
T Consensus 1087 ~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~ 1120 (1439)
T PF12252_consen 1087 VTPVVTDAEKVRVRYETLITDITKRITDLEKAKL 1120 (1439)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445556666666666666654433
No 282
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=40.40 E-value=1.6e+02 Score=26.31 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=18.8
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
-+..+.+||..+.- +..|+.+||-|.
T Consensus 36 yR~Y~~~~l~~l~~-I~~lr~~G~sL~ 61 (127)
T cd04784 36 YRLYDEEHLERLLF-IRRCRSLDMSLD 61 (127)
T ss_pred CeecCHHHHHHHHH-HHHHHHcCCCHH
Confidence 46778888876554 566889999764
No 283
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=40.25 E-value=3.2e+02 Score=29.10 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=46.3
Q ss_pred hHcccccccCcccchhHHH---------HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 010298 349 SRYGDIAANCNLESNSMRA---------YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 419 (513)
Q Consensus 349 eKHPDIAsnf~lKs~~lRs---------~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeE 419 (513)
.|.|+|-..|...+.-+|- ..||..++-|.||+..+ +.+-.-++.--++|-++.|--|.-|+|
T Consensus 174 ~K~~elq~eft~nseTqr~l~kngetLl~alnfFIsSvnTl~nkT--------i~DTL~Ti~qyEsARiEyDayR~Dle~ 245 (341)
T KOG3876|consen 174 QKSPELQEEFTYNSETQRLLGKNGETLLGALNFFISSVNTLVNKT--------IEDTLMTIKQYESARIEYDAYRTDLEE 245 (341)
T ss_pred ccCHHHHHHhCcCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHhhhhhhhhhhhhhhHHH
Confidence 3455555555554444443 56788888899998777 344556777888999999999999998
Q ss_pred HH
Q 010298 420 IS 421 (513)
Q Consensus 420 V~ 421 (513)
..
T Consensus 246 ~~ 247 (341)
T KOG3876|consen 246 LT 247 (341)
T ss_pred hc
Confidence 83
No 284
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=40.24 E-value=1e+02 Score=28.69 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~ 492 (513)
++||.-+|++|.|+.+|+.+||.|.+=|..+
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556788999999999999988777543
No 285
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=40.08 E-value=2e+02 Score=33.41 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh
Q 010298 390 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF 426 (513)
Q Consensus 390 ~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~ 426 (513)
.++--....++.-.+...+=+.||..-++-+...+++
T Consensus 175 ~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I 211 (775)
T TIGR00763 175 KDELQEVLETVNIEKRLKKALELLKKELELLKLQNKI 211 (775)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445556666666555555544
No 286
>PLN02372 violaxanthin de-epoxidase
Probab=40.04 E-value=3e+02 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010298 469 KESVAKTKARLSDLELESNRLEQIIQA 495 (513)
Q Consensus 469 ~erv~e~k~RL~~LE~ess~L~k~v~~ 495 (513)
++.-.+-++-|.+|.|+.+++++.+..
T Consensus 424 ~~lskee~~~l~~~~~~~~~vek~f~~ 450 (455)
T PLN02372 424 KELSKEEKELLEKLKMEASEVEKLFGR 450 (455)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444445566677888888888776643
No 287
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.95 E-value=93 Score=27.42 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=36.7
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID-AAKANCVNLLESTKKELESQMNELALKEKE 464 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le-~eKd~~e~~~e~~kkELEe~leeL~qKeke 464 (513)
+-.+.+|+..+ ..+..|++.||.|.=++.-|+. +.+.+ ...+....+++...++|++++++|....+.
T Consensus 36 R~Y~~~d~~~l-~~I~~lr~~G~sl~eI~~~l~~----------~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 104 (116)
T cd04769 36 RVYDAQHVECL-RFIKEARQLGFTLAELKAIFAG----------HEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLAR 104 (116)
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCHHHHHHHHhc----------cccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777654 4566778899986543333321 11110 001222344555555666665555555555
Q ss_pred Hhh
Q 010298 465 VAG 467 (513)
Q Consensus 465 v~d 467 (513)
+..
T Consensus 105 l~~ 107 (116)
T cd04769 105 LDA 107 (116)
T ss_pred HHH
Confidence 544
No 288
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.73 E-value=92 Score=26.53 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=21.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
++-++..-++++...|.+|+....+....|..++++|
T Consensus 46 ~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 46 ELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred hCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444555666666666666666666666666655
No 289
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=39.58 E-value=3.9e+02 Score=27.22 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=9.1
Q ss_pred cccccCcccchhHH
Q 010298 353 DIAANCNLESNSMR 366 (513)
Q Consensus 353 DIAsnf~lKs~~lR 366 (513)
|++++.+...|.--
T Consensus 124 D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 124 DFVADLRAPTPTAA 137 (319)
T ss_pred HHHHHhhCCCHHHH
Confidence 66677777776533
No 290
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.45 E-value=5.8e+02 Score=30.11 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=15.3
Q ss_pred EeccEEeecchHHHHHHHHhHcccc
Q 010298 330 SVGKYHVRASISSILQSIISRYGDI 354 (513)
Q Consensus 330 ~VnGFqVl~Sqv~iV~~IFeKHPDI 354 (513)
.-+.+-|..+.-.-+..+...++.+
T Consensus 433 ~~g~~viitTH~~eL~~~~~~~~~v 457 (771)
T TIGR01069 433 KQNAQVLITTHYKELKALMYNNEGV 457 (771)
T ss_pred hcCCEEEEECChHHHHHHhcCCCCe
Confidence 3455666667666666666556555
No 291
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=39.37 E-value=3.8e+02 Score=31.21 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=6.1
Q ss_pred HHHHHHHHHhcch
Q 010298 372 CLCSVVQELQSTS 384 (513)
Q Consensus 372 ~Ll~LIetL~ksp 384 (513)
.+++|-++|-.-|
T Consensus 88 afl~vye~L~eaP 100 (629)
T KOG0963|consen 88 AFLDVYEKLIEAP 100 (629)
T ss_pred HHHHHHHHHhhCC
Confidence 3444455554444
No 292
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.27 E-value=6.6e+02 Score=29.02 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=15.5
Q ss_pred HHHHHHHhHcccccccCcccchhHHHHHHHHH
Q 010298 342 SILQSIISRYGDIAANCNLESNSMRAYYLECL 373 (513)
Q Consensus 342 ~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~L 373 (513)
..+..+-+|-++.-. +|..+|+-.|-..
T Consensus 159 ~~~EaL~ekLk~~~e----en~~lr~k~~llk 186 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEE----ENTQLRSKAMLLK 186 (596)
T ss_pred HHHHHHHhhcCChHH----HHHHHHHHHHHHH
Confidence 445555566555433 4677777555443
No 293
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.11 E-value=4.2e+02 Score=26.76 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcch----hhhhhHHHHHHHHHH
Q 010298 365 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDV----DWLRNILNEISEAIE 425 (513)
Q Consensus 365 lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKV----DWLekKLeEV~Eare 425 (513)
+.++++-.+=.+|+.+-.+- .+-+--+.+|...|..++..=-++ -=|+.+|++...-.+
T Consensus 7 ~~~~~~a~~~~~~dk~EDp~--~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~ 69 (225)
T COG1842 7 LKDLVKANINELLDKAEDPE--KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAE 69 (225)
T ss_pred HHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666664443 555566666666666665432222 234455555544443
No 294
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=39.05 E-value=4e+02 Score=26.47 Aligned_cols=53 Identities=23% Similarity=0.190 Sum_probs=27.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Q 010298 432 TIDAAKANCVNLLESTKKELESQMNELALKEKE-VAGLKESVAKTKARLSDLEL 484 (513)
Q Consensus 432 ~le~eKd~~e~~~e~~kkELEe~leeL~qKeke-v~d~~erv~e~k~RL~~LE~ 484 (513)
.+.+++..+...++....+|..++.+|...-.. .....+|...+..||.+...
T Consensus 107 ~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 107 EIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666665543322 22234455555555555443
No 295
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.01 E-value=5.2e+02 Score=27.73 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 476 KARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 476 k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
++||.+++.|..-+.++|.-+|+=++
T Consensus 202 ~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 202 KERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888888887666
No 296
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=38.97 E-value=3.8e+02 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=24.0
Q ss_pred EEeccEEeecchHHHHH--HHHhHcccccccCcccchhH
Q 010298 329 VSVGKYHVRASISSILQ--SIISRYGDIAANCNLESNSM 365 (513)
Q Consensus 329 V~VnGFqVl~Sqv~iV~--~IFeKHPDIAsnf~lKs~~l 365 (513)
|.+.|-.+. ..+..|. -|.-.+|++--+|...+...
T Consensus 264 v~~e~~e~p-~~~s~wspagis~~~~a~~e~c~~~d~eq 301 (527)
T PF15066_consen 264 VTVEGVESP-EIASTWSPAGISWSSGASQEDCKTPDTEQ 301 (527)
T ss_pred cchhcccCc-ccccCCCCCcccccccchhhhccCCCHHh
Confidence 666664443 5566666 67677888888888776543
No 297
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=38.45 E-value=2.6e+02 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=26.0
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
||+.+-+.|+.++..+.+-|+..-+.+|-.+.||.
T Consensus 123 pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~ 157 (229)
T cd07594 123 PLRNFLEGDMKTISKERKLLENKRLDLDACKTRVK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666667777888888888877777777777775
No 298
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.31 E-value=3.1e+02 Score=33.12 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHH
Q 010298 390 KAKVKEMMAVLKDVESAQIDVDWLRNILNEIS 421 (513)
Q Consensus 390 ~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~ 421 (513)
.-++..+.++=.+|+.. =+|.|=+-|..|+.
T Consensus 392 kkeie~rEaar~ElEkq-RqlewErar~qem~ 422 (1118)
T KOG1029|consen 392 KKEIERREAAREELEKQ-RQLEWERARRQEML 422 (1118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34555556666666543 46778777777665
No 299
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=38.10 E-value=4.8e+02 Score=35.20 Aligned_cols=63 Identities=22% Similarity=0.234 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 439 ~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
+|+....+...+|++.-++..+++.++.|+=.+..++-+.-.-++..-..|.+.|.++--|.+
T Consensus 555 ~W~~~k~e~~~~L~~~ne~~i~Le~~I~~Lfk~y~~~~~e~~yi~~lK~~lk~kiK~is~k~e 617 (2757)
T TIGR01612 555 NWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNE 617 (2757)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777888888888888888888886555555544444444444455555555544433
No 300
>PRK10698 phage shock protein PspA; Provisional
Probab=38.09 E-value=3.5e+02 Score=26.92 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 010298 462 EKEVAGLKESVAKTKARL 479 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL 479 (513)
+..+.+++.+-..+.+|.
T Consensus 126 ~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 126 ENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 301
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=38.01 E-value=3.3e+02 Score=25.19 Aligned_cols=25 Identities=0% Similarity=0.242 Sum_probs=17.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
+-.+.++|..+. .+..|++.||-|+
T Consensus 36 R~Y~~~~l~~l~-~I~~lr~~G~sL~ 60 (134)
T cd04779 36 RYYDETALDRLQ-LIEHLKGQRLSLA 60 (134)
T ss_pred eeECHHHHHHHH-HHHHHHHCCCCHH
Confidence 456677776554 4567789999887
No 302
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=37.91 E-value=6.9e+02 Score=30.77 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=25.8
Q ss_pred HHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHH
Q 010298 343 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQE 379 (513)
Q Consensus 343 iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIet 379 (513)
.+..+-++|.||.+.+.---+.+...+...+-.+-..
T Consensus 367 ~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~ 403 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQ 403 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446778999999988877777777776555444444
No 303
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=37.80 E-value=23 Score=39.52 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.4
Q ss_pred cccccccceEEeccEEeecchHHHHHHHHhHcccccccCcc
Q 010298 320 EAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNL 360 (513)
Q Consensus 320 E~~SvvsEtV~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~l 360 (513)
.+..+.+|.+.++||||-|..+ ..++-.||+|.--|-+
T Consensus 425 ~IvdR~KdlIk~~G~qv~P~Ei---E~vL~~hP~V~eaaVv 462 (537)
T KOG1176|consen 425 YIVDRSKDLIKYGGEQVSPAEI---EAVLLTHPDVLEAAVV 462 (537)
T ss_pred EEecchhhheeeCCEEeCHHHH---HHHHHhCCCccEEEEE
Confidence 6678889999999999999985 4679999998765544
No 304
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=37.73 E-value=3.3e+02 Score=27.67 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 010298 392 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 425 (513)
Q Consensus 392 dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare 425 (513)
|+..+.+.|..|. .+.+|+..+++.-.+..+
T Consensus 117 e~~~~~~nlk~l~---~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 117 DLRILDSNLKSLS---AKEEKLEQKEEKYEEELK 147 (205)
T ss_pred HHHHhHhHHHHHH---HHHHHHhhhHHHHHHHHH
Confidence 4444455555554 556777777765555443
No 305
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=37.68 E-value=1.9e+02 Score=25.73 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=19.4
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
-+..+.+||..+. .+..|++.||-|.
T Consensus 36 yR~Y~~~~l~~l~-~I~~lr~~G~sL~ 61 (126)
T cd04783 36 YRRYPEETVTRLR-FIKRAQELGFTLD 61 (126)
T ss_pred CeecCHHHHHHHH-HHHHHHHcCCCHH
Confidence 3667888887764 5667899999873
No 306
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.36 E-value=4.2e+02 Score=28.30 Aligned_cols=87 Identities=21% Similarity=0.383 Sum_probs=46.4
Q ss_pred cchhhhhhHHHHHHHHH-HhhhhhhhHHHHHH-----------hhHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010298 408 IDVDWLRNILNEISEAI-EFSTQHQTIDAAKA-----------NCVNL-------LESTKKELESQMNELALKEKEVAGL 468 (513)
Q Consensus 408 fKVDWLekKLeEV~Ear-e~~~~~~~le~eKd-----------~~e~~-------~e~~kkELEe~leeL~qKekev~d~ 468 (513)
|.++-|..||..+-+.- .+-...+.++.+.. .|-+. |..+-.||....++...-+++|.-+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999988775332 22223333332211 11111 1222444555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 469 KESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 469 ~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
..+|.+...|+..+=.+...|.+.+.
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66666666666666666666655553
No 307
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.34 E-value=1.4e+02 Score=33.60 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
|+++...+++.|+++++++..+..|...+..++.+..+|+..+.-|+..|
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555666666666666666666666555
No 308
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.33 E-value=2.7e+02 Score=25.92 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 010298 458 LALKEKEVAGLKESVAKTKARLSD 481 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~ 481 (513)
+...++....+++|+.++++.|-.
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445556555555543
No 309
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=37.31 E-value=2.6e+02 Score=27.36 Aligned_cols=35 Identities=37% Similarity=0.434 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
.+|+++-++-...+.++-+. +-+||.+|--+|.++
T Consensus 111 EkEykealea~nEknkeK~~-------Lv~~L~eLv~eSE~~ 145 (159)
T PF04949_consen 111 EKEYKEALEAFNEKNKEKAQ-------LVTRLMELVSESERL 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 44455455555555555555 344444444444443
No 310
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=37.16 E-value=3.8e+02 Score=26.92 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH-hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010298 389 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKANCVNLLESTKKELESQMNELA 459 (513)
Q Consensus 389 S~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare-~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~ 459 (513)
|.+|+.....-|.-|+ +|||=|+-.|+++-+... -..+.-+++..-...+.++.++..++..+|.=|.
T Consensus 70 Sr~DiarvA~lvinlE---~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 70 TKEDIANVASLVINLE---EKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888887777 899999998888766653 1112223333333344555555555555544333
No 311
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=36.82 E-value=1.7e+02 Score=26.85 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=19.1
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
-+..+.++|..+. .+..|+.+||.|+
T Consensus 36 yR~Y~~~~l~~l~-~I~~lr~~G~sl~ 61 (135)
T PRK10227 36 YRTYTQQHLNELT-LLRQARQVGFNLE 61 (135)
T ss_pred cccCCHHHHHHHH-HHHHHHHCCCCHH
Confidence 4677888887655 5566899999865
No 312
>PRK14159 heat shock protein GrpE; Provisional
Probab=36.69 E-value=63 Score=31.50 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010298 473 AKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 473 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
.++++++-++..+...+.++..-=+....+|...+|+-+|
T Consensus 40 ~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~L 79 (176)
T PRK14159 40 DELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544445555555444444444
No 313
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=36.66 E-value=2.2e+02 Score=31.75 Aligned_cols=57 Identities=25% Similarity=0.263 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHH-------------HHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 448 KKELESQMNELALKE-------------KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 448 kkELEe~leeL~qKe-------------kev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
+.+-|+.|.+|+||- ++-.+.+.|.+=-.+|+.+++-+. +|+..--+-+||+.+-.+
T Consensus 313 k~~kE~kL~elAQkAR~~r~g~~~~~~~ked~e~~~R~eiR~~Rrke~~~~~-nlsra~~dKrsKl~r~r~ 382 (506)
T KOG2441|consen 313 KEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRDRRKEREKDR-NLSRAAPDKRSKLQRDRG 382 (506)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHhh-hhhhhccchhhhhhhccC
Confidence 555677788888763 233334444444578999888777 666655666777765443
No 314
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.64 E-value=2.4e+02 Score=33.14 Aligned_cols=15 Identities=60% Similarity=0.787 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 010298 448 KKELESQMNELALKE 462 (513)
Q Consensus 448 kkELEe~leeL~qKe 462 (513)
++++++++++|.+++
T Consensus 545 ~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 545 KKELEQEMEELKERE 559 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 315
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.49 E-value=3e+02 Score=24.24 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 010298 470 ESVAKTKARLS 480 (513)
Q Consensus 470 erv~e~k~RL~ 480 (513)
.++.++..+|.
T Consensus 95 ~~l~e~q~~l~ 105 (110)
T TIGR02338 95 EQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 316
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=36.23 E-value=5.1e+02 Score=30.91 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
...++.+..+|++...-|.++.+.+..
T Consensus 342 qsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 342 QSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 317
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.17 E-value=4.8e+02 Score=31.47 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=26.6
Q ss_pred HhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHH
Q 010298 380 LQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNE 419 (513)
Q Consensus 380 L~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeE 419 (513)
|..-..++..+.+..+|.+.|.-+- .||..+|++
T Consensus 646 l~d~~~~e~~k~~re~a~N~LE~~l------~e~q~~l~d 679 (902)
T KOG0104|consen 646 LEDFVQKEKEKSEREEASNELEAFL------FELQDKLDD 679 (902)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH------HHHHHHhcC
Confidence 3333447888888988888887765 999999998
No 318
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=36.13 E-value=3.9e+02 Score=25.51 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh-------hhhHHHHHHHHHHhhhhhhhHHHHHHhhHH
Q 010298 370 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW-------LRNILNEISEAIEFSTQHQTIDAAKANCVN 442 (513)
Q Consensus 370 Mn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDW-------LekKLeEV~Eare~~~~~~~le~eKd~~e~ 442 (513)
++.|+.-|-.||+ ++..+.++|.+|...-.-|.. .||= |+..|..-.++..++..|++-++....+-.
T Consensus 8 iE~LInrInelQQ--aKKk~~EELgEa~~l~eaL~~---ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~ 82 (134)
T PF15233_consen 8 IEDLINRINELQQ--AKKKSSEELGEAQALWEALQR---ELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQ 82 (134)
T ss_pred HHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5789999999999 589999999999876554432 3333 344444444555677777764443332111
Q ss_pred HH--HH-HHHHHHHHHHHHHHHHHHHhh
Q 010298 443 LL--ES-TKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 443 ~~--e~-~kkELEe~leeL~qKekev~d 467 (513)
.+ +- .+-+++.+|++|-..-|..=+
T Consensus 83 ~~~~eck~R~~fe~qLE~lm~qHKdLwe 110 (134)
T PF15233_consen 83 TLLQECKLRLDFEEQLEDLMGQHKDLWE 110 (134)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00 144556666666655555433
No 319
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.06 E-value=2.2e+02 Score=30.27 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=11.4
Q ss_pred HHHHHHhhhhHHHHHHHhhh
Q 010298 479 LSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 479 L~~LE~ess~L~k~v~~~kS 498 (513)
|.++-.|...|.|.|.-+|+
T Consensus 119 LKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44445555566666666555
No 320
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=36.02 E-value=1.8e+02 Score=25.96 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=33.3
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 010298 352 GDIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 414 (513)
Q Consensus 352 PDIAsnf~lKs~~lRs~YMn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLe 414 (513)
+++|.-+.+....+| +|-. .+||--- ..+--+..|.++|..+. .+..+..+||-|+=++
T Consensus 4 ~e~a~~~gvs~~tlR-yYe~--~GLl~p~~r~~~gyR~Y~~~~l~~l~-~I~~lr~~G~sL~eI~ 64 (127)
T TIGR02044 4 GQVAKLTGLSSKMIR-YYEE--KGLIPPPLRSEGGYRTYTQQHLDELR-LISRARQVGFSLEECK 64 (127)
T ss_pred HHHHHHHCcCHHHHH-HHHH--CCCCCCCCcCCCCCeecCHHHHHHHH-HHHHHHHCCCCHHHHH
Confidence 344555555555555 3322 2333211 12334778888888776 5556899999865333
No 321
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=36.01 E-value=1.7e+02 Score=34.09 Aligned_cols=82 Identities=29% Similarity=0.211 Sum_probs=41.9
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
..-|+.+|.++.+..+-..++.-++....++...++....+....-.++..+|.++...-+++.-.+.++.+.|++-++|
T Consensus 580 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~eae~~~~e~~~~~~~~~~~~~~~~~~~~e~k~~~l 659 (664)
T KOG4568|consen 580 AAALREKLKEASENKENEVQFQRAELTLENIRHQLELECQQTKDSEAELRLKELEKQKLVEEIEFLKEQDKQNENKLTDL 659 (664)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34556666666666655555555555444444444443222222222344444444444455555667777777766665
Q ss_pred HH
Q 010298 490 EQ 491 (513)
Q Consensus 490 ~k 491 (513)
+.
T Consensus 660 ~~ 661 (664)
T KOG4568|consen 660 ES 661 (664)
T ss_pred Hh
Confidence 43
No 322
>PRK14147 heat shock protein GrpE; Provisional
Probab=35.96 E-value=62 Score=31.29 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010298 445 ESTKKELESQMNELALKEKEVAGLKESVAKT 475 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev~d~~erv~e~ 475 (513)
+.+++++++....+.+...+....+.|...-
T Consensus 28 ~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 28 ESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433334444444444444444433
No 323
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=35.53 E-value=5.5e+02 Score=29.70 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhh
Q 010298 362 SNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS 427 (513)
Q Consensus 362 s~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~ 427 (513)
|..+|...|-+||. -.+|..+|+.++|.++|.+|+..|..=..--.-.|| +-++|......++
T Consensus 456 n~~~R~slmi~ll~-~d~~~~P~~~d~s~eel~~a~~llk~e~~~l~~dd~--q~~~ec~s~~~~l 518 (617)
T KOG0050|consen 456 NDAPRVSLMIVLLA-YDTLNYPPFKDFSQEELDNAYDLLKQEAEELVSDDY--QFLKECLSRMQYL 518 (617)
T ss_pred hhhhhhHHHHHHHH-hcccCCCCCCCCCHHHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHHHH
Confidence 35666666655554 478889999999999999999998765544445577 7777777766665
No 324
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.49 E-value=5.8e+02 Score=28.53 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=8.6
Q ss_pred HHHhcCcchhhhhhHH
Q 010298 402 DVESAQIDVDWLRNIL 417 (513)
Q Consensus 402 dLe~aGfKVDWLekKL 417 (513)
.|+.+.=+|.+|+..|
T Consensus 219 ~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 219 ELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555555
No 325
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=34.90 E-value=1.8e+02 Score=24.95 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=19.9
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
-+-.+.+||..+.. +..|.+.||.|+
T Consensus 36 yR~Y~~~~~~~l~~-I~~lr~~G~~l~ 61 (97)
T cd04782 36 YRYYTLEQFEQLDI-ILLLKELGISLK 61 (97)
T ss_pred CccCCHHHHHHHHH-HHHHHHcCCCHH
Confidence 36778888877766 456999999874
No 326
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.87 E-value=7.5e+02 Score=28.38 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=8.9
Q ss_pred cCcccchhHHHHHHHHHHH
Q 010298 357 NCNLESNSMRAYYLECLCS 375 (513)
Q Consensus 357 nf~lKs~~lRs~YMn~Ll~ 375 (513)
.|.-.+|.+=....|.|..
T Consensus 160 s~~~~dP~~Aa~iaN~la~ 178 (754)
T TIGR01005 160 EFRSEDPKLAAAIPDAIAA 178 (754)
T ss_pred EEecCCHHHHHHHHHHHHH
Confidence 3444455544444444443
No 327
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.83 E-value=2.5e+02 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=10.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHh
Q 010298 463 KEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~LE~e 485 (513)
+|+++....++.++.+..+|+.|
T Consensus 168 ~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 168 KELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333444455555555544
No 328
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.70 E-value=2e+02 Score=28.30 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhh
Q 010298 473 AKTKARLSDLELES 486 (513)
Q Consensus 473 ~e~k~RL~~LE~es 486 (513)
.++..+|.+|+.+.
T Consensus 156 ~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 156 EELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 329
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=34.63 E-value=8.5e+02 Score=28.92 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010298 443 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 499 (513)
Q Consensus 443 ~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSK 499 (513)
..+.++.++++-...|.+.+..+.+.+..+..++..+.+||.+-.+|...+..+++.
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333445556666666777777777777777888888888888888887777666654
No 330
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.63 E-value=2.8e+02 Score=23.34 Aligned_cols=31 Identities=10% Similarity=0.347 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010298 469 KESVAKTKARLSDLELESNRLEQIIQATQSK 499 (513)
Q Consensus 469 ~erv~e~k~RL~~LE~ess~L~k~v~~~kSK 499 (513)
|..+.+...-+.+|.....++.+-+..++.+
T Consensus 39 r~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 39 RAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333333333333
No 331
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.61 E-value=3e+02 Score=29.95 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=8.4
Q ss_pred cchhhhhhHHHHHHHHH
Q 010298 408 IDVDWLRNILNEISEAI 424 (513)
Q Consensus 408 fKVDWLekKLeEV~Ear 424 (513)
++++=|+.+.++++..+
T Consensus 42 ~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 42 TELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555444444
No 332
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.33 E-value=6.9e+02 Score=27.76 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=4.8
Q ss_pred cchHHHHHHHH
Q 010298 338 ASISSILQSII 348 (513)
Q Consensus 338 ~Sqv~iV~~IF 348 (513)
...+.++..|+
T Consensus 226 ~el~~~~~~l~ 236 (582)
T PF09731_consen 226 QELVSIFNDLI 236 (582)
T ss_pred HHHHHhccchh
Confidence 33444444443
No 333
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=34.14 E-value=13 Score=41.65 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcchhhhccHHHHHHHH--HHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHH
Q 010298 368 YYLECLCSVVQELQSTSLMQMTKAKVKEMM--AVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLE 445 (513)
Q Consensus 368 ~YMn~Ll~LIetL~kspl~eLS~~dL~ea~--~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e 445 (513)
.+++.|+.|+.+|.-.|.....+.+|.... ..-..|.. -.++||+..++++.+.+. .+...+.
T Consensus 167 ~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~--~~l~~L~~~~~~L~~~k~-------------~r~~~~~ 231 (619)
T PF03999_consen 167 ELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSD--ENLEKLQELLQELEEEKE-------------EREEKLQ 231 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCH--HHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 456777888888877772133333443311 11111211 245677777766555442 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhhhccccch
Q 010298 446 STKKELESQMNELALKEKEVAG--------LKESVAKTKARLSDLE-LESNRLEQIIQATQSKVTKFSQKSL 508 (513)
Q Consensus 446 ~~kkELEe~leeL~qKekev~d--------~~erv~e~k~RL~~LE-~ess~L~k~v~~~kSKV~kF~~kSl 508 (513)
.+..+|.+.-..|..-+.+... -..-|..++.-|.+|+ ++...|...|..++..+..+-++.+
T Consensus 232 ~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~ 303 (619)
T PF03999_consen 232 ELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCH 303 (619)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 3333333222222222222221 1234455666677776 6666777777777777777654433
No 334
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.03 E-value=3.3e+02 Score=23.96 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=7.3
Q ss_pred hhhhHHHHHHHHHHhh
Q 010298 412 WLRNILNEISEAIEFS 427 (513)
Q Consensus 412 WLekKLeEV~Eare~~ 427 (513)
=|+.|.....+.+.++
T Consensus 8 qLE~KIqqAvdtI~LL 23 (79)
T PRK15422 8 KLEAKVQQAIDTITLL 23 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445544444444433
No 335
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.97 E-value=5.4e+02 Score=29.93 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 474 KTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
++.+++..||-+.+....-..-+.+=|+
T Consensus 418 e~~d~i~~le~e~~~y~de~~kaqaevd 445 (654)
T KOG4809|consen 418 EFADQIKQLEKEASYYRDECGKAQAEVD 445 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766554444444443
No 336
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.79 E-value=2.9e+02 Score=23.35 Aligned_cols=10 Identities=20% Similarity=0.136 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 010298 471 SVAKTKARLS 480 (513)
Q Consensus 471 rv~e~k~RL~ 480 (513)
.-..|.+||.
T Consensus 54 e~~~~~~rl~ 63 (72)
T PF06005_consen 54 ERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 337
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=33.51 E-value=52 Score=29.36 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.4
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 010298 375 SVVQELQSTSLMQMTKAKVKEMMAVLKDVES 405 (513)
Q Consensus 375 ~LIetL~kspl~eLS~~dL~ea~~~L~dLe~ 405 (513)
-||+.|.+.+ .+||++|+.-|..++.|++.
T Consensus 42 rIv~IL~K~k-~dltddD~~hMrkVV~yv~r 71 (92)
T PF11338_consen 42 RIVEILRKRK-TDLTDDDYEHMRKVVGYVKR 71 (92)
T ss_pred HHHHHHhcCc-ccCCHHHHHHHHHHHHHHHH
Confidence 3678888888 99999999999999999873
No 338
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=33.41 E-value=4.5e+02 Score=25.38 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=41.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHH---HHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 438 ANCVNLLESTKKELESQMNEL-ALKEKEVAGLKESVA---KTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL-~qKekev~d~~erv~---e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
...+.++..++++.++..++. ...++++...++|+- .+..|+..|+....=|...+..++.++..+.
T Consensus 27 ~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~L~~l~ 97 (185)
T PRK01194 27 KRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEHLMNIT 97 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 334455555555555554433 333344444455554 5677777787777777888888888877765
No 339
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.23 E-value=3.3e+02 Score=27.56 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 437 KANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 437 Kd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
+..+...+..+..++....++...++.++..|+.++.+.+.-+.+...+
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455445555556666666666655555555444433
No 340
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=33.22 E-value=5.7e+02 Score=27.40 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHH
Q 010298 413 LRNILNEISEAIE 425 (513)
Q Consensus 413 LekKLeEV~Eare 425 (513)
|++|+.|..+++.
T Consensus 249 l~~Ri~et~~ak~ 261 (384)
T PF03148_consen 249 LRKRIHETQEAKN 261 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 6788888888774
No 341
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.08 E-value=2.9e+02 Score=23.92 Aligned_cols=26 Identities=0% Similarity=0.318 Sum_probs=21.3
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
-+-.+++||..+. .+..|.+.||-++
T Consensus 36 ~R~Y~~~~l~~l~-~I~~l~~~G~~l~ 61 (102)
T cd04789 36 YRLYPDSDLQRLL-LIQQLQAGGLSLK 61 (102)
T ss_pred CeeCCHHHHHHHH-HHHHHHHCCCCHH
Confidence 4678889998666 7888999999985
No 342
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=33.05 E-value=2.1e+02 Score=24.91 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=39.0
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 464 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKeke 464 (513)
-+..+.+++..+ ..+..|...||-|. +|..... .... +.....++...++|++++.+|.+..+.
T Consensus 37 yR~Y~~~~i~~l-~~I~~lr~~G~sl~-------~i~~l~~---~~~~-----~~~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (108)
T cd01107 37 YRYYSAEQLERL-NRIKYLRDLGFPLE-------EIKEILD---ADND-----DELRKLLREKLAELEAEIEELQRILRL 100 (108)
T ss_pred ccccCHHHHHHH-HHHHHHHHcCCCHH-------HHHHHHh---cCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888877 47888899999764 3333222 1111 223445555566666666666555555
Q ss_pred Hhh
Q 010298 465 VAG 467 (513)
Q Consensus 465 v~d 467 (513)
+.+
T Consensus 101 l~~ 103 (108)
T cd01107 101 LED 103 (108)
T ss_pred HHH
Confidence 444
No 343
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=32.71 E-value=2.2e+02 Score=24.23 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=33.6
Q ss_pred HHHHHHHHhHcccccccCccc---------chhHH---HHHHHHHHHHHHHHhcch
Q 010298 341 SSILQSIISRYGDIAANCNLE---------SNSMR---AYYLECLCSVVQELQSTS 384 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lK---------s~~lR---s~YMn~Ll~LIetL~ksp 384 (513)
..+..++|++||++-.-|..- ++.++ ..++++|-.+|..|....
T Consensus 24 ~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~ 79 (140)
T cd01040 24 LEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNLDDLE 79 (140)
T ss_pred HHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHHHhccChH
Confidence 567889999999998888653 45555 478888888888876654
No 344
>PRK14164 heat shock protein GrpE; Provisional
Probab=32.66 E-value=61 Score=32.68 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010298 447 TKKELESQMNELALKEKEVAGLKESVA 473 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~erv~ 473 (513)
+++++++..+.|.+...+....|.|..
T Consensus 82 le~el~el~d~llR~~AE~eN~RkR~~ 108 (218)
T PRK14164 82 VEAQLAERTEDLQRVTAEYANYRRRTE 108 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555544
No 345
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=32.60 E-value=2.2e+02 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHhhhhhhhc
Q 010298 445 ESTKKELESQMNELA-----LKEKEVAGLKESVAKTKARLSDLELESNRLE-QIIQATQSKVTKF 503 (513)
Q Consensus 445 e~~kkELEe~leeL~-----qKekev~d~~erv~e~k~RL~~LE~ess~L~-k~v~~~kSKV~kF 503 (513)
..+..+|...+..+. ++...+.++...+.+..+=|.+|++|...+. ..-..+++||+.|
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~y 66 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSY 66 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
No 346
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=32.48 E-value=6.2e+02 Score=33.32 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=20.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 463 KEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
.++.|+..++.+.-.++.+||+....+++.+..++..++-
T Consensus 1498 ~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1498 QEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555554443
No 347
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.47 E-value=4.3e+02 Score=28.47 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=6.6
Q ss_pred cCcccchhHHHHH
Q 010298 357 NCNLESNSMRAYY 369 (513)
Q Consensus 357 nf~lKs~~lRs~Y 369 (513)
-.+..+...|+-+
T Consensus 210 ~~~~d~kDWR~hl 222 (359)
T PF10498_consen 210 TIRADAKDWRSHL 222 (359)
T ss_pred eccCCcchHHHHH
Confidence 3344555666543
No 348
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=32.42 E-value=1e+03 Score=29.22 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=5.1
Q ss_pred CCCCCCCCcc
Q 010298 168 SQPGTPLTPR 177 (513)
Q Consensus 168 ~~~~~p~~~~ 177 (513)
+-|.||..|-
T Consensus 253 ~IP~LP~~~P 262 (980)
T KOG0980|consen 253 QIPTLPEDAP 262 (980)
T ss_pred cCCCCCCCCc
Confidence 3455665443
No 349
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=32.36 E-value=3.2e+02 Score=25.50 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 473 AKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 473 ~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
.+.++=|.++..-..+|++-|..-...|..|.
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888888888888874
No 350
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=32.24 E-value=3.9e+02 Score=33.58 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHH
Q 010298 413 LRNILNEISEAI 424 (513)
Q Consensus 413 LekKLeEV~Ear 424 (513)
+-+.|+|+.+..
T Consensus 466 ~~keL~e~i~~l 477 (1317)
T KOG0612|consen 466 MDKELEETIEKL 477 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 351
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=32.19 E-value=3.9e+02 Score=24.29 Aligned_cols=13 Identities=8% Similarity=0.491 Sum_probs=6.8
Q ss_pred hhccHHHHHHHHH
Q 010298 386 MQMTKAKVKEMMA 398 (513)
Q Consensus 386 ~eLS~~dL~ea~~ 398 (513)
+.||.++|.+...
T Consensus 2 ~~lS~~eL~~Ll~ 14 (150)
T PF07200_consen 2 QDLSTEELQELLS 14 (150)
T ss_dssp GS-TTHHHHHHHH
T ss_pred CcCCHHHHHHHHc
Confidence 4566666665544
No 352
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=4.4e+02 Score=31.51 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhcch
Q 010298 367 AYYLECLCSVVQELQSTS 384 (513)
Q Consensus 367 s~YMn~Ll~LIetL~ksp 384 (513)
.+|+..|++.++.+-+..
T Consensus 129 ~al~~~i~~~~~~~~~l~ 146 (782)
T COG0466 129 EALVRSILSEFEEYAKLN 146 (782)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555555555554444
No 353
>PTZ00046 rifin; Provisional
Probab=31.89 E-value=1.2e+02 Score=32.85 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=46.4
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHhhhhHHHHH-----------H
Q 010298 427 STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLS-DLELESNRLEQII-----------Q 494 (513)
Q Consensus 427 ~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~-~LE~ess~L~k~v-----------~ 494 (513)
+|-..++++..++-++.--.+=+|-+|.+++-+|++||-+|-.-|-==.+++|. +|..+.+.|+..| .
T Consensus 51 YDNDPeMK~Vme~F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ekf~tL~TdI~tddIPTCVCEK 130 (358)
T PTZ00046 51 YDNDPEMKSVMENFDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEKFATLQTDIQSDAIPTCVCEK 130 (358)
T ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhcccCCccccCccccccc
Confidence 455555666667767776667778888888888888888882111111244442 3444444443333 2
Q ss_pred Hhhhhhhhc
Q 010298 495 ATQSKVTKF 503 (513)
Q Consensus 495 ~~kSKV~kF 503 (513)
++--||+|+
T Consensus 131 SlADKvEK~ 139 (358)
T PTZ00046 131 SLADKVEKG 139 (358)
T ss_pred hHHHHHHHH
Confidence 566688877
No 354
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.84 E-value=3.2e+02 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~es 486 (513)
+.+.++++.++++.+..+++||..+....
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666777777777665433
No 355
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.79 E-value=9.4e+02 Score=28.57 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=40.1
Q ss_pred chHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhH
Q 010298 339 SISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKD 402 (513)
Q Consensus 339 Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~d 402 (513)
+.......++.+..|.++.-.--+-.++..+.+..-.+...+....-+.-...|+..|-+.+..
T Consensus 311 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~ 374 (698)
T KOG0978|consen 311 SKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLK 374 (698)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 3667788888888888776554444666666665555555555444233334477777666665
No 356
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.71 E-value=2.3e+02 Score=27.57 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 469 KESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 469 ~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
-++|..++..+..+.....+.--+|-.|++=+.+
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3566666666666666666666666666654444
No 357
>PRK10698 phage shock protein PspA; Provisional
Probab=31.67 E-value=5.3e+02 Score=25.69 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 010298 471 SVAKTKARLSDLELES 486 (513)
Q Consensus 471 rv~e~k~RL~~LE~es 486 (513)
++..++.+|.+++.+.
T Consensus 121 ~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 121 EIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333443333333
No 358
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.60 E-value=2.6e+02 Score=29.47 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=8.6
Q ss_pred hhhhhHHHHHHHHH
Q 010298 411 DWLRNILNEISEAI 424 (513)
Q Consensus 411 DWLekKLeEV~Ear 424 (513)
+||+.+|.++....
T Consensus 174 ~fl~~ql~~~~~~l 187 (444)
T TIGR03017 174 LWFVQQIAALREDL 187 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665444
No 359
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=31.52 E-value=2.9e+02 Score=23.91 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
|+..+..|......+.++..++.+...+|..++.....+..++
T Consensus 23 Lq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 23 LQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555556666677777777777777666665443
No 360
>PF13166 AAA_13: AAA domain
Probab=31.49 E-value=8e+02 Score=27.65 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=25.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 460 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 460 qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
..++++..++..+......+.+|+.....+...+..+-..+..|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 428 SLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444444555555666666666666555555555566666665
No 361
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=31.34 E-value=2e+02 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.3
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 417 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKL 417 (513)
+..+.+|+..+.-+ ..|+++||.|+=++.-|
T Consensus 37 R~Y~~~~v~~l~~I-~~lr~~GfsL~eI~~ll 67 (131)
T cd04786 37 RDYPPETVWVLEII-SSAQQAGFSLDEIRQLL 67 (131)
T ss_pred eecCHHHHHHHHHH-HHHHHcCCCHHHHHHHH
Confidence 45777777766554 44899999876444433
No 362
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.25 E-value=2.3e+02 Score=32.32 Aligned_cols=98 Identities=20% Similarity=0.095 Sum_probs=42.4
Q ss_pred chhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHH--HhhHHHHHHHHHHHHHHHHHHHH
Q 010298 383 TSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAK--ANCVNLLESTKKELESQMNELAL 460 (513)
Q Consensus 383 spl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eK--d~~e~~~e~~kkELEe~leeL~q 460 (513)
+.+--||++||-+|...--+-. .=|..|=-++.....+++.....++.. +..+...+.+..++....+-|++
T Consensus 406 SDlfvLskdDl~~aL~eYP~a~------~~L~~kgr~iL~kd~lld~~~~~~~~~~~d~~E~~~~~Le~~~~~l~~Rl~~ 479 (536)
T KOG0500|consen 406 SDLFVLSKDDLWEALSEYPDAR------KRLEEKGRQILHKDGLLDENELGAMQDPSDDEEKRDESLENEVVLLQLRLAR 479 (536)
T ss_pred ceeeEeeHHHHHHHHHhCCHHH------HHHHHHHHHHhhhccccchhhhhhccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 3446688888887765443332 111122113333333333322222111 12222222222232222223333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 461 KEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 461 Kekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
.+.|.. .....|+.||..+|+.....
T Consensus 480 i~~e~~---~~~~km~qr~~~le~~~~~~ 505 (536)
T KOG0500|consen 480 ILDEYH---SSQQKMKQRLSVLEKQLKPG 505 (536)
T ss_pred HHhhhh---hhhHHHHHHHHHHHHHhhhh
Confidence 333333 35566777777777665554
No 363
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=31.12 E-value=5e+02 Score=28.96 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhhh-hHHHHHHHhhhhh
Q 010298 451 LESQMNELALKE-KEVAGLKESVAKTKARLSDLELESN-RLEQIIQATQSKV 500 (513)
Q Consensus 451 LEe~leeL~qKe-kev~d~~erv~e~k~RL~~LE~ess-~L~k~v~~~kSKV 500 (513)
||++|.+|-+.. -|+..++....-|.+|+.=..-++. +|...+...+..+
T Consensus 311 LEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtri 362 (455)
T KOG3850|consen 311 LEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRI 362 (455)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655543 4666666666667777665553333 3444444444433
No 364
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.10 E-value=4.4e+02 Score=24.60 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
-+....+=+.+|+.+..+-+++|.
T Consensus 94 llk~y~~~~~~L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 94 LLKKYKDLLNKLDKEIAEQEQIID 117 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555443
No 365
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=30.98 E-value=4.8e+02 Score=24.90 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 468 LKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k 491 (513)
+...+.++..|+..++.+...+.+
T Consensus 168 ~~~ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 168 AENEIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555444444444433
No 366
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=30.97 E-value=2.4e+02 Score=25.59 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=6.8
Q ss_pred hhHHHHHHHhhhhhhh
Q 010298 487 NRLEQIIQATQSKVTK 502 (513)
Q Consensus 487 s~L~k~v~~~kSKV~k 502 (513)
..|+.+|..|..+|++
T Consensus 99 ~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 99 EALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 367
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=30.95 E-value=23 Score=32.53 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010298 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 479 (513)
Q Consensus 439 ~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL 479 (513)
.....+..+.+++++..+.+.++..++...+.|...-..++
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~ 55 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEA 55 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666655555444433
No 368
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=30.92 E-value=3.2e+02 Score=25.22 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 010298 471 SVAKTKARLSDLE 483 (513)
Q Consensus 471 rv~e~k~RL~~LE 483 (513)
.++++..|+.+||
T Consensus 127 ~~~~~~~riaEle 139 (139)
T PF13935_consen 127 EIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHhcC
Confidence 4455666666664
No 369
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=2.2e+02 Score=30.98 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=24.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 435 AAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 435 ~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
+.-...++.+....+||+.+.+.|.|....++.
T Consensus 235 ~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQK 267 (365)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 333445666777789999998888887777666
No 370
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=30.48 E-value=5.6e+02 Score=25.70 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 392 KVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 392 dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
|+.++..+.+-|+..-+.+|-.+.||....-. ....+..|+.++.+.++..+.....-..+.+
T Consensus 112 ~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~-------------~~~~eeElr~Ae~kfees~E~a~~~M~~i~~ 174 (215)
T cd07593 112 EMKEYHSARKKLESRRLAYDAALTKSQKAKKE-------------DSRLEEELRRAKAKYEESSEDVEARMVAIKE 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777777777776543110 0123444555555555555554444444444
No 371
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=30.47 E-value=1.4e+02 Score=35.65 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 447 TKKELESQMNELALKEKEVAGL-------KESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~-------~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
+.++|+...+++...++.+..- .+.++.-+++|.+++.+..+|.+.|..++.
T Consensus 934 L~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 934 LEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444331 256777899999999999999998888773
No 372
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=30.45 E-value=5.9e+02 Score=29.81 Aligned_cols=139 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHH--------HHHhcchhhhccHH---HHHHHHHHHhHHHhcCcchhhhhhHHHHHH---------HHHHhhhh
Q 010298 370 LECLCSVV--------QELQSTSLMQMTKA---KVKEMMAVLKDVESAQIDVDWLRNILNEIS---------EAIEFSTQ 429 (513)
Q Consensus 370 Mn~Ll~LI--------etL~kspl~eLS~~---dL~ea~~~L~dLe~aGfKVDWLekKLeEV~---------Eare~~~~ 429 (513)
|+.|...+ ..+.-+.+-.+-+. +|-...+.+.=|+ .-||.|=.||++-. ...++.+.
T Consensus 167 Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLr---aSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r 243 (683)
T PF08580_consen 167 LETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLR---ASLDFLPMRIEEFQSRAESIFPSACEELEDR 243 (683)
T ss_pred HHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhHHHHHHH-------------HHHHHHHHHhhh
Q 010298 430 HQTIDAAKANCVNLLESTKKELESQ---------MNELALKEKEVAGLKESVAKT-------------KARLSDLELESN 487 (513)
Q Consensus 430 ~~~le~eKd~~e~~~e~~kkELEe~---------leeL~qKekev~d~~erv~e~-------------k~RL~~LE~ess 487 (513)
|..|+.+++.++..++.+|+||-+. ..++...+++|.+.-.++.+. ..+|..++...+
T Consensus 244 ~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~ 323 (683)
T PF08580_consen 244 YERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKS 323 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHh
Q ss_pred hHHHHH------------------HHhhhhhhhccccchhhhcC
Q 010298 488 RLEQII------------------QATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 488 ~L~k~v------------------~~~kSKV~kF~~kSl~D~lL 513 (513)
..-..| .+|..|...+. ..+|.+|
T Consensus 324 ~~~~~I~ka~~~sIi~~gv~~r~n~~L~~rW~~L~--~~~d~~L 365 (683)
T PF08580_consen 324 HYFPAIYKARVLSIIDKGVADRLNADLAQRWLELK--EDMDSLL 365 (683)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHH--HHHHHhh
No 373
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=29.97 E-value=8.8e+02 Score=27.69 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=65.3
Q ss_pred cchHHHHHHHHhHcccccccC---ccc-ch-----hHHHHHHHHHHHHHHHHhcch-----hhhccHHHHHHHHHHHhHH
Q 010298 338 ASISSILQSIISRYGDIAANC---NLE-SN-----SMRAYYLECLCSVVQELQSTS-----LMQMTKAKVKEMMAVLKDV 403 (513)
Q Consensus 338 ~Sqv~iV~~IFeKHPDIAsnf---~lK-s~-----~lRs~YMn~Ll~LIetL~ksp-----l~eLS~~dL~ea~~~L~dL 403 (513)
.-|..+|++|++-.-||...= .+. ++ ..+.--|+-|-..||+||++- |.++=.+|+.-|...|.
T Consensus 440 daqG~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~-- 517 (583)
T KOG3809|consen 440 DAQGALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELE-- 517 (583)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHH--
Confidence 346789999999877764321 111 11 122235888889999999875 22222333333332221
Q ss_pred HhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010298 404 ESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKE-------LESQMNELALKEKEVAGLKESVAKTK 476 (513)
Q Consensus 404 e~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkE-------LEe~leeL~qKekev~d~~erv~e~k 476 (513)
-| .+..++.-+++.+| .|-....|++++++++|.++.|-+.+
T Consensus 518 -------mW------------------------rse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r 566 (583)
T KOG3809|consen 518 -------MW------------------------RSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKAR 566 (583)
T ss_pred -------HH------------------------HHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 11111112222222 23345578899999999999999998
Q ss_pred HHHHHHHHhh
Q 010298 477 ARLSDLELES 486 (513)
Q Consensus 477 ~RL~~LE~es 486 (513)
+|+-+-|...
T Consensus 567 ~~IL~Ne~rI 576 (583)
T KOG3809|consen 567 GRILNNEKRI 576 (583)
T ss_pred HHHhhhHHHH
Confidence 8886655443
No 374
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.93 E-value=6.6e+02 Score=26.88 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=8.0
Q ss_pred HHhHHHhcCcchhhhhh
Q 010298 399 VLKDVESAQIDVDWLRN 415 (513)
Q Consensus 399 ~L~dLe~aGfKVDWLek 415 (513)
-+..|..|.-.+.=|..
T Consensus 204 cv~QL~~An~qia~Lse 220 (306)
T PF04849_consen 204 CVKQLSEANQQIASLSE 220 (306)
T ss_pred HHHHhhhcchhHHHHHH
Confidence 34445555555544443
No 375
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=29.90 E-value=6.1e+02 Score=26.03 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=54.1
Q ss_pred cccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHH
Q 010298 355 AANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID 434 (513)
Q Consensus 355 Asnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le 434 (513)
.++++|.-.-.+. ||.|-..+...- .+-++.-+.++...+.+++...-.|+==..+|.++ +.- .-.+
T Consensus 29 ~~~~kL~~egA~a-----LC~l~~L~~~v~-~~~ad~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~-~~~------~l~~ 95 (286)
T PF11727_consen 29 NADCKLNGEGAAA-----LCTLKDLVEKVR-NETADYLVKETEDFLGDIKLHKEQVDHRVERLRSL-EKG------KLTD 95 (286)
T ss_pred CccCccCHHHHHH-----HHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhc------CCCH
Confidence 5667777666554 444444333331 34455556666777777665444443222355555 311 1122
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010298 435 AAKANCVNLLESTKKELESQMNELALKEKEVAGL 468 (513)
Q Consensus 435 ~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~ 468 (513)
...+.+....+.+++++.+++.......+.+.+.
T Consensus 96 ~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 129 (286)
T PF11727_consen 96 SDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEET 129 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666677777777777766555555553
No 376
>PHA03161 hypothetical protein; Provisional
Probab=29.72 E-value=4.2e+02 Score=25.77 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=17.3
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010298 425 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELAL 460 (513)
Q Consensus 425 e~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~q 460 (513)
+.+..|+.++..++ +...+..+...|++..+||+.
T Consensus 45 ~~lr~~~~~~~~~~-i~~~v~~l~~~I~~k~kE~~~ 79 (150)
T PHA03161 45 KSLIKHENLKKQKS-IEGMLQAVDLSIQEKKKELSL 79 (150)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555544 345555555555555444443
No 377
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=29.63 E-value=18 Score=36.43 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=23.8
Q ss_pred CCCccCCCCCCCCCCccccccccccccCCCC
Q 010298 116 EGRKVDPTCIKASNPYHECGEHCFKRNGEAN 146 (513)
Q Consensus 116 e~~~~~p~cpnasNpyh~c~~~c~~~~~~~~ 146 (513)
++-...-.|||..|.||.|.+||-+..+.+.
T Consensus 74 es~~~~~~~~~k~n~~~r~~~~~~~k~~rg~ 104 (222)
T KOG3427|consen 74 ESYHGYKLCPNKYNIYHRCSLYCVNKFNRGP 104 (222)
T ss_pred ccccccccCccccchhhhhhhhhccccccCC
Confidence 3333455899999999999999977666543
No 378
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=29.61 E-value=5.1e+02 Score=27.19 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=6.6
Q ss_pred HHHHHHHhHccccc
Q 010298 342 SILQSIISRYGDIA 355 (513)
Q Consensus 342 ~iV~~IFeKHPDIA 355 (513)
+-+..|+.||-|+.
T Consensus 22 eK~~~L~kk~~ell 35 (309)
T PF09728_consen 22 EKLEALCKKYAELL 35 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555443
No 379
>COG4420 Predicted membrane protein [Function unknown]
Probab=29.58 E-value=6e+02 Score=25.61 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k 491 (513)
.+++.....++|..+.-.....+.++.++++.|.+++.+......
T Consensus 132 aE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~ 176 (191)
T COG4420 132 AEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEA 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHH
Confidence 355555555666655555555666888888888888877777655
No 380
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.46 E-value=2.5e+02 Score=25.37 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 010298 475 TKARLSDLELESNRLEQII 493 (513)
Q Consensus 475 ~k~RL~~LE~ess~L~k~v 493 (513)
+-+.=.+|.++...|..+|
T Consensus 34 l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 34 LLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333
No 381
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.40 E-value=91 Score=30.81 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=38.6
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010298 409 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSD 481 (513)
Q Consensus 409 KVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~ 481 (513)
||-|=.-++.-.-.-.+...++..+.++-+.+++.+++..++|+ .|+++.+|+.| -|.++-+|+.+
T Consensus 106 kL~~~~l~i~~~V~~~el~eK~~~~~~Everi~~~ieE~v~eLe----~~a~~lke~~~---~i~~l~~~ik~ 171 (181)
T COG4345 106 KLNFEALTIGIEVYPKELEEKLADAMEEVERIEKTIEELVSELE----SLANKLKEVTD---VINSLVERIKQ 171 (181)
T ss_pred ccccccceeeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHc
Confidence 66675555543333333334445555555666666666666655 67778888888 45555555544
No 382
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=29.06 E-value=3e+02 Score=30.79 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=40.4
Q ss_pred chHHHHHHHHhHcccccccCcccch-hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 010298 339 SISSILQSIISRYGDIAANCNLESN-SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 417 (513)
Q Consensus 339 Sqv~iV~~IFeKHPDIAsnf~lKs~-~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKL 417 (513)
-+.++-..|-++|.|+..++.--.. ..| ...|..=|..+.+.-+.+-...+|.++...+..|+..=-...++-.-|
T Consensus 26 ~k~eV~~~I~~~y~df~~~~~~~~~L~~~---~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L 102 (593)
T PF06248_consen 26 LKEEVHSMINKKYSDFSPSLQSAKDLIER---SKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVL 102 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999988876543322 222 122333332222222234445566666655555544322233333333
Q ss_pred HHHHHHHHhh
Q 010298 418 NEISEAIEFS 427 (513)
Q Consensus 418 eEV~Eare~~ 427 (513)
+.+.+.-+.+
T Consensus 103 ~~L~~i~~~l 112 (593)
T PF06248_consen 103 EQLQEIDELL 112 (593)
T ss_pred HHHHHHHHHH
Confidence 3443333333
No 383
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.04 E-value=2.8e+02 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHH
Q 010298 470 ESVAKTKARLSDLE 483 (513)
Q Consensus 470 erv~e~k~RL~~LE 483 (513)
.++..+.+||..++
T Consensus 39 ~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 39 RQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhc
Confidence 33333444444443
No 384
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.84 E-value=5.6e+02 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010298 449 KELESQMNELALKEKEVAGLKESVAKTKARLSD 481 (513)
Q Consensus 449 kELEe~leeL~qKekev~d~~erv~e~k~RL~~ 481 (513)
+.++++++.+.++.+.+.+..+++...+..|..
T Consensus 518 ~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 518 RQLEEELEDAQKKNDNAADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 385
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.83 E-value=4.2e+02 Score=28.77 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=11.1
Q ss_pred hccHHHHHHHHHHHhHHHhcCcc
Q 010298 387 QMTKAKVKEMMAVLKDVESAQID 409 (513)
Q Consensus 387 eLS~~dL~ea~~~L~dLe~aGfK 409 (513)
+-+.+..-+.|.. .-|+.+||+
T Consensus 288 eqTHtrhYElyRr-~kL~~Mgf~ 309 (406)
T KOG3859|consen 288 EQTHTRHYELYRR-CKLEEMGFK 309 (406)
T ss_pred hhccccchHHHHH-HHHHHcCCc
Confidence 3344445555543 246667763
No 386
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.61 E-value=5.4e+02 Score=24.82 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 010298 417 LNEISEAI 424 (513)
Q Consensus 417 LeEV~Ear 424 (513)
+..|.+.|
T Consensus 35 I~~iLe~R 42 (155)
T PRK06569 35 AEEIFNNR 42 (155)
T ss_pred HHHHHHHH
Confidence 33333333
No 387
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.60 E-value=1.9e+02 Score=29.21 Aligned_cols=21 Identities=0% Similarity=-0.048 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHHHHHHHHHh
Q 010298 361 ESNSMRAYYLECLCSVVQELQ 381 (513)
Q Consensus 361 Ks~~lRs~YMn~Ll~LIetL~ 381 (513)
.++++-=..+-+|.+++-++=
T Consensus 44 ~~p~lvilV~avi~gl~~~i~ 64 (201)
T COG1422 44 LPPHLVILVAAVITGLYITIL 64 (201)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 566666666777777766653
No 388
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.57 E-value=73 Score=26.51 Aligned_cols=30 Identities=47% Similarity=0.482 Sum_probs=23.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 010298 463 KEVAGLKESVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~LE~ess~L~k~ 492 (513)
+||.-+|++|.+..+|..+||.+.+-|.+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556778888999999999888887653
No 389
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=28.37 E-value=3e+02 Score=24.83 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~ess~ 488 (513)
|.+.+.-..+...+++++.+.|..|.+....
T Consensus 16 L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~ 46 (103)
T PF08654_consen 16 LKQLRDLSADLASQLEALSEKLETMADGAEA 46 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3333333333444444444444444444333
No 390
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.19 E-value=1.1e+03 Score=28.08 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=5.3
Q ss_pred hhhhHHHHHH
Q 010298 412 WLRNILNEIS 421 (513)
Q Consensus 412 WLekKLeEV~ 421 (513)
|....++++.
T Consensus 583 ~~~~~l~~~r 592 (908)
T COG0419 583 TRKEELEELR 592 (908)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 391
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.10 E-value=3.4e+02 Score=30.61 Aligned_cols=6 Identities=0% Similarity=0.373 Sum_probs=3.3
Q ss_pred ccHHHH
Q 010298 388 MTKAKV 393 (513)
Q Consensus 388 LS~~dL 393 (513)
||-+++
T Consensus 42 ltpee~ 47 (472)
T TIGR03752 42 LSPEEL 47 (472)
T ss_pred CCcchh
Confidence 555554
No 392
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.09 E-value=4.1e+02 Score=23.24 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHH
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 490 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~ 490 (513)
.+..+++.+.-.++..++..+...+..++.+...++.....+.
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666655566666665555555555443
No 393
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=28.08 E-value=4.2e+02 Score=25.97 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=10.2
Q ss_pred HHhhhhhhhccccchhhhc
Q 010298 494 QATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 494 ~~~kSKV~kF~~kSl~D~l 512 (513)
..++..+++..-.+.+||.
T Consensus 126 ~~~~~~~~~~~i~AP~~G~ 144 (322)
T TIGR01730 126 ASAQLNLRYTEIRAPFDGT 144 (322)
T ss_pred HHHHHhhccCEEECCCCcE
Confidence 3344455555556666654
No 394
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=28.07 E-value=9.1e+02 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcC
Q 010298 365 MRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQ 407 (513)
Q Consensus 365 lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aG 407 (513)
+-+-|+++|+.+.++- -++.+++...=...|..|+...
T Consensus 136 lC~eC~d~l~~~ld~e-----~~~~~~e~~~Y~~~l~~Le~~~ 173 (447)
T KOG2751|consen 136 LCEECMDVLLNKLDKE-----VEDAEDEVDTYKACLQRLEQQN 173 (447)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhcC
Confidence 4566777777766543 2333334333334444444433
No 395
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=28.00 E-value=3.6e+02 Score=24.34 Aligned_cols=25 Identities=0% Similarity=0.101 Sum_probs=18.5
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
+..+.+++..+ ..+..|++.||-|+
T Consensus 37 R~Y~~~~~~~l-~~I~~lr~~G~sL~ 61 (133)
T cd04787 37 RLYSEKDLSRL-RFILSARQLGFSLK 61 (133)
T ss_pred eeCCHHHHHHH-HHHHHHHHcCCCHH
Confidence 46677777766 56677899999865
No 396
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=27.98 E-value=3.8e+02 Score=24.96 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=4.3
Q ss_pred hhHHHHHHHhhh
Q 010298 487 NRLEQIIQATQS 498 (513)
Q Consensus 487 s~L~k~v~~~kS 498 (513)
..|+..+..++.
T Consensus 50 ~~lEs~~~~lk~ 61 (112)
T PF07439_consen 50 TTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 397
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.94 E-value=6.7e+02 Score=29.33 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k 491 (513)
.+-+.-++...+.++++|+..++|.+.++++-.-..+|.-++...-..|.+
T Consensus 587 qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~ 637 (741)
T KOG4460|consen 587 QRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMN 637 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445555556666666666655555444444444444444333333333
No 398
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.84 E-value=2.3e+02 Score=24.65 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHh
Q 010298 391 AKVKEMMAVLKDVES 405 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~ 405 (513)
.++..+..+|..|..
T Consensus 30 ~e~~~~~~~l~~l~~ 44 (129)
T cd00890 30 TEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHhhc
Confidence 455666666666654
No 399
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=27.84 E-value=23 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.7
Q ss_pred hHHHHHHHHhHcccccccCcc
Q 010298 340 ISSILQSIISRYGDIAANCNL 360 (513)
Q Consensus 340 qv~iV~~IFeKHPDIAsnf~l 360 (513)
....+..|.++||||+..+.-
T Consensus 15 L~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 15 LQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHHhChhHHHHHHh
Confidence 347889999999999976543
No 400
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=27.78 E-value=6.2e+02 Score=25.75 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=20.6
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
++.+=+.||.++..+.+-|+..-+.+|--++|+.
T Consensus 124 L~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~ 157 (220)
T cd07617 124 LRNFLEGDWKTISKERRLLQNRRLDLDACKARLK 157 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666654
No 401
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=27.77 E-value=5e+02 Score=24.76 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=22.5
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 414 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLe 414 (513)
--+-.+.+||..+ ..+..|.++||.|+=++
T Consensus 36 gyR~Y~~~dl~rL-~~I~~lr~~G~sL~eI~ 65 (172)
T cd04790 36 NYRLYGERDLERL-EQICAYRSAGVSLEDIR 65 (172)
T ss_pred CCccCCHHHHHHH-HHHHHHHHcCCCHHHHH
Confidence 3477888999888 66677899999865333
No 402
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=27.68 E-value=2.4e+02 Score=26.84 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhHHHhcC
Q 010298 391 AKVKEMMAVLKDVESAQ 407 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~aG 407 (513)
.||..+-..+.+|++|+
T Consensus 37 ~dik~~k~~~enledA~ 53 (131)
T KOG1760|consen 37 ADIKEAKTEIENLEDAS 53 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 403
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.57 E-value=3.8e+02 Score=22.73 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+....+++.....++.+.+.|.+....|.+.|..+-.+|++.
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566666677777777777777777777777776654
No 404
>PF12081 GldM_N: GldM N-terminal domain; InterPro: IPR022720 This domain is found in bacteria at the N terminus of the gliding motility-associated protein, GldM. This domain is typically between 169 to 182 amino acids in length. This domain has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Flavobacterium johnsoniae UW101 Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=27.48 E-value=5e+02 Score=24.97 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
.......+.-+..+..|. .+..+-.++..++-.+..++...+.+|-.-|..+|..+-+-.|
T Consensus 15 ~s~~~~~~~N~~~~~~l~---~k~~~np~k~~~~~~kA~~vk~~s~~l~~~i~~lK~~l~~~~~ 75 (194)
T PF12081_consen 15 ESNANAEKSNDNLYAALE---VKASENPAKYGEWYKKAKQVKKKSDELYAYIEELKEELIKEAG 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444555555555663 3344445588889999999999999998888889888877654
No 405
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.33 E-value=4.2e+02 Score=29.50 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHH
Q 010298 468 LKESVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~ 492 (513)
+.+.+.+++.+|..++.....++.-
T Consensus 73 l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 73 LIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444444555555555444444333
No 406
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.27 E-value=8.1e+02 Score=27.57 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=48.8
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcch--hh---hccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhh
Q 010298 358 CNLESNSMRAYYLECLCSVVQELQSTS--LM---QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFST 428 (513)
Q Consensus 358 f~lKs~~lRs~YMn~Ll~LIetL~ksp--l~---eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~ 428 (513)
.+-++..+.+-|++.|--+|.+|...- |+ --|-+.|.++...++|+- .=.++.+.++.+..+++.
T Consensus 206 ~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l------~k~k~~~~~l~~K~~iL~ 275 (446)
T KOG4438|consen 206 MKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLL------QKEKSAMVELQEKAKILE 275 (446)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999998654 11 236678888887777775 347788888888877765
No 407
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=27.12 E-value=3.1e+02 Score=21.54 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 472 VAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 472 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
...++.++.+|......|...+..-+.+++
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345566666666666666665555555443
No 408
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.07 E-value=7.4e+02 Score=26.75 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010298 474 KTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
+....|.+++.+...+...+..++..+.+..-.+.+||.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~ 326 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGV 326 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeE
Confidence 445555555556566666666666777777777777775
No 409
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=27.02 E-value=9.4e+02 Score=27.09 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=12.1
Q ss_pred hhhccHHHHHHHHHHHhHHH
Q 010298 385 LMQMTKAKVKEMMAVLKDVE 404 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe 404 (513)
++..|.+.|.+|...+..+-
T Consensus 394 lq~~t~~~i~~ml~~V~~ii 413 (507)
T PF05600_consen 394 LQQQTAESIEEMLSAVEEII 413 (507)
T ss_pred HHhcCHHHHHHHHHHHHHHH
Confidence 45666677766666555543
No 410
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.88 E-value=8.6e+02 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 474 KTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
+++.-|..+-+.--+..+.+..++.++
T Consensus 468 d~~~~~~~~~d~~i~~~~~~l~~W~~~ 494 (503)
T KOG2273|consen 468 DFKESLKKYADLHVEYAEQILKAWEKF 494 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333444444444
No 411
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.74 E-value=5.5e+02 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 010298 440 CVNLLESTKKELESQMNELALK 461 (513)
Q Consensus 440 ~e~~~e~~kkELEe~leeL~qK 461 (513)
|-..+...++.|.+..+.|...
T Consensus 37 C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 37 CSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444433
No 412
>PF15463 ECM11: Extracellular mutant protein 11
Probab=26.73 E-value=5e+02 Score=23.99 Aligned_cols=83 Identities=13% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH-----HhhhhhhhHHHHHHhhHHHH
Q 010298 370 LECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI-----EFSTQHQTIDAAKANCVNLL 444 (513)
Q Consensus 370 Mn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear-----e~~~~~~~le~eKd~~e~~~ 444 (513)
|.-++...+.=+..-+.+||-++-.++. |||-.+..+|.... ++....+..+.+-..+...+
T Consensus 51 l~~~~~~~~~~q~~~fs~ls~~eWe~~G-------------d~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav 117 (139)
T PF15463_consen 51 LEELFKLSEQEQEEFFSNLSFDEWEEAG-------------DWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAV 117 (139)
T ss_pred HHHHHhcChHHHHHHHhcCCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010298 445 ESTKKELESQMNELALKEKEV 465 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev 465 (513)
+.....|..+|+++...-++|
T Consensus 118 ~~~~~~l~~kL~~mk~~G~ei 138 (139)
T PF15463_consen 118 RAQGEQLDRKLEKMKEGGKEI 138 (139)
T ss_pred HHHHHHHHHHHHHHHHhhccc
No 413
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.61 E-value=4.4e+02 Score=28.35 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=9.0
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 010298 463 KEVAGLKESVAKTKARLSDL 482 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~L 482 (513)
+.+.--+.|+.+++.+|.++
T Consensus 39 ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333344444455555444
No 414
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=26.57 E-value=2.7e+02 Score=25.92 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=32.2
Q ss_pred ccccccCcccchhHHHHHHHHHHHHHHHH-h-cchhhhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 010298 352 GDIAANCNLESNSMRAYYLECLCSVVQEL-Q-STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLR 414 (513)
Q Consensus 352 PDIAsnf~lKs~~lRs~YMn~Ll~LIetL-~-kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLe 414 (513)
+++|.-+.+.-..+| +|-. .+||.-- . .+--+..+.++|..+. .+..++.+||.|+=++
T Consensus 11 gevAk~~Gvs~~TLR-yYE~--~GLl~p~~r~~~gyR~Y~~~~l~rl~-~I~~lr~~G~sL~eI~ 71 (144)
T PRK13752 11 GVFAKAAGVNVETIR-FYQR--KGLLPEPDKPYGSIRRYGEADVTRVR-FVKSAQRLGFSLDEIA 71 (144)
T ss_pred HHHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCCeecCHHHHHHHH-HHHHHHHcCCCHHHHH
Confidence 344444444444444 3433 2444311 1 2224678888887765 4556889999875443
No 415
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.47 E-value=5e+02 Score=23.72 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
..++.++.++++...++...+.....+..++......|..+.++..++...+...+.
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444445555555555555555555555544443
No 416
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=26.40 E-value=7.2e+02 Score=27.04 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 010298 391 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear 424 (513)
.+|.++...+..|.. .|+|+=|+.++.++.+..
T Consensus 7 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~l 39 (367)
T PRK00578 7 ERLKDLDEKLENIRG-VLDVDALKERLEELEAEA 39 (367)
T ss_pred HHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHh
Confidence 457777777766663 588888888888887544
No 417
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.33 E-value=7.3e+02 Score=25.77 Aligned_cols=103 Identities=12% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCc--chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHH---------HHH
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQI--DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKE---------LES 453 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGf--KVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkE---------LEe 453 (513)
...+.+.=+..+...+.++....- -++||++.|+++.... +..+..+...+.+ ...
T Consensus 145 A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l-------------~~ae~~l~~fr~~~~~~d~~~~~~~ 211 (362)
T TIGR01010 145 AQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRL-------------NATKAELLKYQIKNKVFDPKAQSSA 211 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhCCCcChHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHhhhhHHHHHHHhhhhh
Q 010298 454 QMNELALKEKEVAGLKESVAKTKARLSD-------LELESNRLEQIIQATQSKV 500 (513)
Q Consensus 454 ~leeL~qKekev~d~~erv~e~k~RL~~-------LE~ess~L~k~v~~~kSKV 500 (513)
...-+...+.+..+.+.++.+++.+..+ |+.+...|...|.....++
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHh
No 418
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=26.31 E-value=1.1e+02 Score=29.85 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=7.8
Q ss_pred hhhhhHHHHHHHHH
Q 010298 411 DWLRNILNEISEAI 424 (513)
Q Consensus 411 DWLekKLeEV~Ear 424 (513)
.=|+.||+.+.|..
T Consensus 3 eD~EsklN~AIERn 16 (166)
T PF04880_consen 3 EDFESKLNQAIERN 16 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33566666555544
No 419
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.28 E-value=1.4e+02 Score=23.81 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 466 AGLKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 466 ~d~~erv~e~k~RL~~LE~ess~L~k 491 (513)
..++.+++++.++|.+|+.-.+.-.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888999999998877776544
No 420
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=26.24 E-value=2.4e+02 Score=33.24 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 010298 389 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 425 (513)
Q Consensus 389 S~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare 425 (513)
+.++--+...++.-.+...+=+.+|..-++-+...++
T Consensus 176 ~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~ 212 (784)
T PRK10787 176 KLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKR 212 (784)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444555555544444443
No 421
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.23 E-value=7.4e+02 Score=25.62 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=8.3
Q ss_pred HHHhcCcchhhhhhHHHHHH
Q 010298 402 DVESAQIDVDWLRNILNEIS 421 (513)
Q Consensus 402 dLe~aGfKVDWLekKLeEV~ 421 (513)
+|..-.=+.|=.++++++|.
T Consensus 58 ~l~ei~~~qd~reK~~~~I~ 77 (230)
T PF03904_consen 58 YLSEIEEKQDIREKNLKEIK 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443
No 422
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.22 E-value=5.6e+02 Score=31.81 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=25.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
.......+..++.++|+.||.+..-|-+.|..|+-
T Consensus 524 qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 524 QYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33445567888888999999988888776766653
No 423
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=26.21 E-value=1.2e+02 Score=29.64 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=27.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
++.++..++.++++++-++..+...+.++..-=+-+..+|....|+.+||
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlL 93 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444556666666555555555555555555665555555544
No 424
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=26.07 E-value=7.1e+02 Score=29.30 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=40.8
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 010298 375 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE 425 (513)
Q Consensus 375 ~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare 425 (513)
-.+++++..- .+.+..=|..+=.++.|+..+.-++.=|+.++..|.+..+
T Consensus 45 l~~qe~~~~l-e~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~ 94 (766)
T PF10191_consen 45 LYSQEVNASL-EETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIK 94 (766)
T ss_pred HHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555554 7778888888889999999999999999999999998764
No 425
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.04 E-value=7.1e+02 Score=25.32 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010298 440 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK 476 (513)
Q Consensus 440 ~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k 476 (513)
.+.++..++.+.+...+...++..|+.-++..|.+++
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 426
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=26.04 E-value=5.3e+02 Score=23.87 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=30.7
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHH-HHHHHHHHHHHhhhhHHHHH
Q 010298 431 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVA----GLKESVA-KTKARLSDLELESNRLEQII 493 (513)
Q Consensus 431 ~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~----d~~erv~-e~k~RL~~LE~ess~L~k~v 493 (513)
+-|+.+|+.-...|+.-+.+.|.+ +..++...- .+..+++ ++.++|..|+..+.+.+.-|
T Consensus 31 ~RLKQAKeEA~~Eie~yr~qrE~e---fk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~k~~~~V 95 (108)
T KOG1772|consen 31 RRLKQAKEEAEKEIEEYRSQREKE---FKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQKNSDDV 95 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444444444444433 333444331 1223333 67888888887777765544
No 427
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.02 E-value=4.8e+02 Score=29.93 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+..+|-+.|.+|..+-..-+.-|..|+++.+-.
T Consensus 324 K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 324 KSQEWPGKLEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444455555555444555666666666543
No 428
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=25.82 E-value=7e+02 Score=25.16 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=12.9
Q ss_pred HHHHHHHhhhhhhhccccchhhhc
Q 010298 489 LEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 489 L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
+...+..++..+.+-.-.+.+||.
T Consensus 191 ~~~~l~~a~~~l~~~~i~AP~dG~ 214 (327)
T TIGR02971 191 ALEAVQQAEALLELTYVKAPIDGR 214 (327)
T ss_pred HHHHHHHHHHHHhcCEEECCCCeE
Confidence 333444455555555556666664
No 429
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=25.62 E-value=5e+02 Score=26.07 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 468 LKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k 491 (513)
.+.+++.++.||..|+.+.-+|=+
T Consensus 112 ~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 112 LKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888877766543
No 430
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.44 E-value=5.1e+02 Score=28.86 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=18.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 459 ALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 459 ~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
..+..++++++.++.+....|.+++++..++
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344555555556666666666666665554
No 431
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=25.41 E-value=23 Score=40.31 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
+...+..+.+++..|+.+..+|..-...++..++
T Consensus 389 l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 389 LEFENKQLEEKLEALEEEKERLQEERDSLRETNE 422 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444444444443
No 432
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.39 E-value=3.5e+02 Score=27.96 Aligned_cols=15 Identities=20% Similarity=0.147 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHh-cch
Q 010298 370 LECLCSVVQELQ-STS 384 (513)
Q Consensus 370 Mn~Ll~LIetL~-ksp 384 (513)
.++||..++.|| ..|
T Consensus 159 vevLL~~ae~L~~vYP 174 (259)
T PF08657_consen 159 VEVLLRGAEKLCNVYP 174 (259)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 477888888887 444
No 433
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.29 E-value=3.9e+02 Score=22.03 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010298 444 LESTKKELESQMNELALKEKEVAGLKESVAKT 475 (513)
Q Consensus 444 ~e~~kkELEe~leeL~qKekev~d~~erv~e~ 475 (513)
++.+.+.+-.+-.++...+.++..+..|+.++
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333334444444444443
No 434
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.21 E-value=6.5e+02 Score=24.56 Aligned_cols=8 Identities=0% Similarity=0.472 Sum_probs=3.3
Q ss_pred cccccccc
Q 010298 304 FSFSGIDL 311 (513)
Q Consensus 304 fS~~~i~~ 311 (513)
|++..|.+
T Consensus 12 y~lKELEK 19 (188)
T PF03962_consen 12 YTLKELEK 19 (188)
T ss_pred ccHHHHHH
Confidence 44444433
No 435
>PLN02943 aminoacyl-tRNA ligase
Probab=25.18 E-value=1.8e+02 Score=34.80 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 447 TKKELESQMNELALKEKEVAGL-------KESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~-------~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
+.++|+...+++...++.+..- .+.++.-+++|.+++.+...|.+.|..+++
T Consensus 894 L~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 894 LSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455555554431 256777788999999999998888877764
No 436
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=25.17 E-value=2.3e+02 Score=27.73 Aligned_cols=14 Identities=7% Similarity=-0.067 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHH
Q 010298 364 SMRAYYLECLCSVV 377 (513)
Q Consensus 364 ~lRs~YMn~Ll~LI 377 (513)
.|.-.+|+.-++|=
T Consensus 58 ~l~~~kl~sylGle 71 (163)
T PF03233_consen 58 WLKLSKLLSYLGLE 71 (163)
T ss_pred HHHHHHHHHHhccc
Confidence 44555555555543
No 437
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.13 E-value=5.6e+02 Score=27.31 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------HHHHhhhhHHHH
Q 010298 426 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLS-------------DLELESNRLEQI 492 (513)
Q Consensus 426 ~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~-------------~LE~ess~L~k~ 492 (513)
+.+....|+..-...........+.=..-+--|+.+|+||.++..+|.+.+..+. ...+..++|+.-
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~e 185 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGE 185 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhccc
Q 010298 493 IQATQSKVTKFSQ 505 (513)
Q Consensus 493 v~~~kSKV~kF~~ 505 (513)
|..-+-|++...+
T Consensus 186 le~tk~Klee~Qn 198 (330)
T KOG2991|consen 186 LEQTKDKLEEAQN 198 (330)
T ss_pred HHHHHHHHHHHHh
No 438
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=25.01 E-value=5.1e+02 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=11.4
Q ss_pred HHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 010298 375 SVVQELQSTSLMQMTKAKVKEMMAVLKDVE 404 (513)
Q Consensus 375 ~LIetL~kspl~eLS~~dL~ea~~~L~dLe 404 (513)
.|+..+--.|+..+=+..=..+...|.+.+
T Consensus 10 ~il~~~~~~pi~~~l~~R~~~I~~~l~~A~ 39 (147)
T TIGR01144 10 WFCMKYVWPPLAKAIETRQKKIADGLASAE 39 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334443333333333333333
No 439
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=24.81 E-value=2.8e+02 Score=27.28 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 010298 364 SMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 405 (513)
Q Consensus 364 ~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~ 405 (513)
.--..||.-|++++-+|-..-+..++..|+..+...+..|++
T Consensus 109 v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ 150 (204)
T PRK14562 109 VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEE 150 (204)
T ss_pred CCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345689999999999999999899999888888887777764
No 440
>PRK00708 sec-independent translocase; Provisional
Probab=24.73 E-value=7.5e+02 Score=25.13 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=5.2
Q ss_pred cchhhhhhHHH
Q 010298 408 IDVDWLRNILN 418 (513)
Q Consensus 408 fKVDWLekKLe 418 (513)
|.++|.+--|-
T Consensus 2 FdIG~~ELlvI 12 (209)
T PRK00708 2 FDIGWSELLVI 12 (209)
T ss_pred CCccHHHHHHH
Confidence 44555554433
No 441
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=24.72 E-value=5.2e+02 Score=23.86 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhH
Q 010298 468 LKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L 489 (513)
...|+.+++.|..+|.-...++
T Consensus 70 ~~~rl~~~r~r~~~L~hR~l~v 91 (141)
T PF13874_consen 70 TSARLEEARRRHQELSHRLLRV 91 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444443
No 442
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.58 E-value=2.9e+02 Score=27.87 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 436 AKANCVNLLES--TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 436 eKd~~e~~~e~--~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
+++.|.+..|. +|+.|.+-..|+.+|..||--++.++.+.++.|...+.....|...+
T Consensus 2 ~WevCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 2 KWEVCQKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred cchHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 443
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=24.26 E-value=7.2e+02 Score=24.77 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010298 416 ILNEISEA 423 (513)
Q Consensus 416 KLeEV~Ea 423 (513)
||.++.+.
T Consensus 9 k~q~L~dk 16 (207)
T PRK01005 9 KLKQICDA 16 (207)
T ss_pred HHHHHHHH
Confidence 33333333
No 444
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=24.14 E-value=1.9e+02 Score=25.97 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 449 KELESQMNELALKEKEVAGLKESVA--KTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 449 kELEe~leeL~qKekev~d~~erv~--e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
.+|+...+.|.+.+..-.+ ||. +++.=|++|+-....|...|..+....++=
T Consensus 9 ~eIekLqe~lk~~e~keaE---Rigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 9 EEIEKLQEQLKQAETKEAE---RIGRIALKAGLGEIEISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHcccccccCCHHHHHHHHHHHHHHHhcc
Confidence 3344344444444444444 665 678888888888888888888776655543
No 445
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=24.11 E-value=6.4e+02 Score=28.37 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010298 454 QMNELALKEKEVAGLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 454 ~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~ 488 (513)
++++|...++++...-.+.+.-+.||.+.+....+
T Consensus 198 ~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ 232 (447)
T KOG2751|consen 198 QLEELEKEEAELDHQLKELEFKAERLNEEEDQYWR 232 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555444433
No 446
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.08 E-value=8.1e+02 Score=26.32 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHhH-HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 010298 392 KVKEMMAVLKD-VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKE 470 (513)
Q Consensus 392 dL~ea~~~L~d-Le~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~e 470 (513)
+|.++..+|.- +..-...|.-++.+|+-|.-.- .+++.-++..+.|||...+-|..++.=---.-.
T Consensus 102 el~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasde-------------a~L~~Kierrk~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 102 ELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDE-------------AALGSKIERRKAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
..+.+.++|..|=.-+.--.+++++|++-++
T Consensus 169 EyE~~EeeLqkly~~Y~l~f~nl~yL~~qld 199 (338)
T KOG3647|consen 169 EYEDCEEELQKLYQRYFLRFHNLDYLKSQLD 199 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 447
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=24.06 E-value=8.6e+02 Score=25.60 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
++.|..++..|..+.- -..|+..++..|+++|.+..--+.-|.+++
T Consensus 147 r~~l~d~I~kLk~k~P----~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 147 RRKLQDEIAKLKYKDP----QSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHH-T----TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 4555555555543321 345788888888888888777666665554
No 448
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.99 E-value=3.2e+02 Score=27.18 Aligned_cols=20 Identities=10% Similarity=0.375 Sum_probs=11.6
Q ss_pred hHHHHHHHHhHcccccccCc
Q 010298 340 ISSILQSIISRYGDIAANCN 359 (513)
Q Consensus 340 qv~iV~~IFeKHPDIAsnf~ 359 (513)
-...++.+..+||-...+..
T Consensus 64 a~~~i~~~~~~~gG~i~~~~ 83 (262)
T PF14257_consen 64 AVKKIENLVESYGGYIESSS 83 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEe
Confidence 34556667777765544444
No 449
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.83 E-value=7.5e+02 Score=25.26 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 447 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
.+.+++...++|..+.++.....+.+.+++-...++.+|.-+|-.--..++..|+
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3444555555677777777777778888888888888888887654445555554
No 450
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=23.81 E-value=4.4e+02 Score=30.69 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 010298 471 SVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k 491 (513)
+...|...|.+|.--++-|.+
T Consensus 633 QFtaME~~msqmnsqss~L~~ 653 (661)
T PRK06664 633 KYLTMDQTVKKMKEQSNYLKN 653 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 451
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.77 E-value=4.2e+02 Score=28.11 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 426 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG--LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 426 ~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d--~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+|-.||.++.+++. =.+.-..|.+|..+.++|.- ++.-+.+..+-|.++.....++.+.|.+++..+.+|
T Consensus 36 ~Y~~yQ~~EQAr~~--------A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 36 WYYFYQNAEQARQE--------AIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.75 E-value=3.6e+02 Score=24.66 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010298 463 KEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
+++.+++..+.++-+.=++|.+|...|...+..+
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555556666666655555544
No 453
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.69 E-value=3.2e+02 Score=24.00 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=19.8
Q ss_pred hhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 010298 385 LMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 415 (513)
Q Consensus 385 l~eLS~~dL~ea~~~L~dLe~aGfKVDWLek 415 (513)
-+..+.++|..+ ..+..|.+.||-++=++.
T Consensus 35 ~R~Y~~~~~~~l-~~I~~lr~~G~sl~eI~~ 64 (112)
T cd01282 35 YRDYDEAAVDRV-RQIRRLLAAGLTLEEIRE 64 (112)
T ss_pred CeecCHHHHHHH-HHHHHHHHcCCCHHHHHH
Confidence 366777777655 455668889998754443
No 454
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.66 E-value=1.1e+03 Score=26.89 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcchhhhccHHH
Q 010298 362 SNSMRAYYLECLCSVVQELQSTSLMQMTKAK 392 (513)
Q Consensus 362 s~~lRs~YMn~Ll~LIetL~kspl~eLS~~d 392 (513)
-.+|+.+==.++++||-.|...- .+|=++.
T Consensus 349 eLQ~k~~kQqvfvDiinkLk~ni-EeLIedK 378 (527)
T PF15066_consen 349 ELQMKITKQQVFVDIINKLKENI-EELIEDK 378 (527)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH-HHHHHhH
Confidence 33444444456777777775554 5554443
No 455
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=23.66 E-value=6.3e+02 Score=23.90 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=6.3
Q ss_pred hhhhHHHHHHHHH
Q 010298 412 WLRNILNEISEAI 424 (513)
Q Consensus 412 WLekKLeEV~Ear 424 (513)
||-+.|..+.+.|
T Consensus 42 fl~kPi~~~l~~R 54 (167)
T PRK08475 42 FAAKPLKNFYKSR 54 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 456
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=23.65 E-value=6.5e+02 Score=24.38 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 010298 471 SVAKTKARLSDL 482 (513)
Q Consensus 471 rv~e~k~RL~~L 482 (513)
+|.+|..+|.+|
T Consensus 120 kv~~ME~~v~el 131 (152)
T PF11500_consen 120 KVAEMERHVTEL 131 (152)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 457
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=23.58 E-value=1.2e+03 Score=26.97 Aligned_cols=72 Identities=22% Similarity=0.378 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhh--------hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010298 388 MTKAKVKEMMAVLKDVESAQIDVDW--------LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELA 459 (513)
Q Consensus 388 LS~~dL~ea~~~L~dLe~aGfKVDW--------LekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~ 459 (513)
+-++-+......|.||..-=.-|.| |..||.++.- ++-......-+.-+.+...++...++|.++++.|-
T Consensus 348 ile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~--e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~Lp 425 (531)
T PF15450_consen 348 ILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKN--EWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLP 425 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555556666653333444 5555555543 22233333333344455555555555555555444
Q ss_pred HH
Q 010298 460 LK 461 (513)
Q Consensus 460 qK 461 (513)
+-
T Consensus 426 qq 427 (531)
T PF15450_consen 426 QQ 427 (531)
T ss_pred HH
Confidence 43
No 458
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.56 E-value=2.7e+02 Score=25.87 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010298 424 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSD 481 (513)
Q Consensus 424 re~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~ 481 (513)
++++++...+++.--..-+.+..+|+-|.++++|=...+-|-.. .++||++
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~-------LR~RL~~ 54 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEK-------LRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH-------HHHHhCC
Confidence 45666666666655555555566666666666665555444444 5556655
No 459
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.53 E-value=1.7e+02 Score=26.17 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=5.3
Q ss_pred HHHhHHHhcCc
Q 010298 398 AVLKDVESAQI 408 (513)
Q Consensus 398 ~~L~dLe~aGf 408 (513)
.+|.+-++.|+
T Consensus 15 ~tlRyYe~~GL 25 (118)
T cd04776 15 RTLRFYEDKGL 25 (118)
T ss_pred HHHHHHHHCCC
Confidence 34555555444
No 460
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.41 E-value=4.3e+02 Score=21.90 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 010298 471 SVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k 491 (513)
++.+...|-..|+.+...|.+
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 461
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=23.41 E-value=7.3e+02 Score=24.52 Aligned_cols=117 Identities=8% Similarity=0.143 Sum_probs=60.0
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhh-hhhhhHHH-----HHHhhHHHHHHHHHHHHHHHHHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFS-TQHQTIDA-----AKANCVNLLESTKKELESQMNELA 459 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~-~~~~~le~-----eKd~~e~~~e~~kkELEe~leeL~ 459 (513)
+..--++|..+.+.|.+.+...-+.+=|++.++..-...+-+ ..-..+.. ...-...-+..+.+.|......|.
T Consensus 16 ~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~ 95 (240)
T PF12795_consen 16 QKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQ 95 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHH
Confidence 333445666666777777776666666666666432222110 01111100 000011123334555555555666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 460 LKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 460 qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
..+....++..++.....|..++....+...+.+..+...+..
T Consensus 96 ~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 96 ELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666655544
No 462
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.36 E-value=6.8e+02 Score=24.14 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
+...+..+......+..++..|.+|+.+..++.....
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666666666666666665544433
No 463
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.31 E-value=3.4e+02 Score=21.57 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010298 478 RLSDLE 483 (513)
Q Consensus 478 RL~~LE 483 (513)
.+..|+
T Consensus 48 ~~~~L~ 53 (64)
T PF00170_consen 48 ELEQLK 53 (64)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 464
>PRK14149 heat shock protein GrpE; Provisional
Probab=23.22 E-value=1.3e+02 Score=29.95 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARL 479 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL 479 (513)
..++.+++++++....+.+...+....|.|...=++++
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~ 80 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMA 80 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555443333
No 465
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.12 E-value=4e+02 Score=24.36 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=7.8
Q ss_pred cCcchhhhhhHHH
Q 010298 406 AQIDVDWLRNILN 418 (513)
Q Consensus 406 aGfKVDWLekKLe 418 (513)
+||=|+|+=.|+.
T Consensus 8 vG~iiG~~~~r~~ 20 (128)
T PF06295_consen 8 VGLIIGFLIGRLT 20 (128)
T ss_pred HHHHHHHHHHHHh
Confidence 4566677765554
No 466
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=23.12 E-value=1e+03 Score=26.17 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=72.1
Q ss_pred chHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHh------HHHhcCcchhh
Q 010298 339 SISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLK------DVESAQIDVDW 412 (513)
Q Consensus 339 Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~------dLe~aGfKVDW 412 (513)
+...+.+.|=.-|=+....++.........++.-+=.+-+.|...-+ ++.+++....+.-- -...+--.|+=
T Consensus 250 ~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~--~~~eea~~lv~~~~~plv~~~q~~~e~~le~ 327 (473)
T PF14643_consen 250 SLNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQELLDWKA--CTEEEAEELVNPEFLPLVGELQSEFEEELEK 327 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666655555555544331 44444433332211 01111112222
Q ss_pred hhhHHHHHHHH-----HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH------
Q 010298 413 LRNILNEISEA-----IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG-LKESVAKTKARLS------ 480 (513)
Q Consensus 413 LekKLeEV~Ea-----re~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d-~~erv~e~k~RL~------ 480 (513)
|.+.|+++... ..+++-.+.+-.-++.....+.....+++..++..+++-.+... ....+....+||.
T Consensus 328 l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~ee 407 (473)
T PF14643_consen 328 LDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQASSEE 407 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 23333333211 11222222333334443444444444444444444444333332 2223333344433
Q ss_pred HHHHhhhhHHHHHHHhhhhhhhcccc
Q 010298 481 DLELESNRLEQIIQATQSKVTKFSQK 506 (513)
Q Consensus 481 ~LE~ess~L~k~v~~~kSKV~kF~~k 506 (513)
.|+....+..+.|..++..-+.|++.
T Consensus 408 ~L~~~l~~~~~~Ld~Ie~~Y~~fh~~ 433 (473)
T PF14643_consen 408 KLKEHLEKALDLLDQIEEEYEDFHKK 433 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444555666777777777654
No 467
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=23.04 E-value=1.5e+02 Score=25.52 Aligned_cols=61 Identities=11% Similarity=0.280 Sum_probs=33.3
Q ss_pred cccccCcccchhHHHHHHHHHHHHHHHH--hcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHH
Q 010298 353 DIAANCNLESNSMRAYYLECLCSVVQEL--QSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNIL 417 (513)
Q Consensus 353 DIAsnf~lKs~~lRs~YMn~Ll~LIetL--~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKL 417 (513)
++|.-|.+....+| +|-. .+++.-. ..+.-+..|.+|+..+.... .|...||-++=++.-|
T Consensus 5 eva~~~gvs~~tlR-~ye~--~Gll~~~~~~~~g~R~y~~~di~~l~~i~-~lr~~g~~l~~i~~~~ 67 (103)
T cd01106 5 EVAKLTGVSVRTLH-YYDE--IGLLKPSRRTENGYRLYTEEDLERLQQIL-FLKELGFSLKEIKELL 67 (103)
T ss_pred HHHHHHCcCHHHHH-HHHH--CCCCCCCccCCCCceeeCHHHHHHHHHHH-HHHHcCCCHHHHHHHH
Confidence 44555556666666 3322 1222111 11223668888887776554 5888898876444433
No 468
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=22.97 E-value=9.5e+02 Score=28.31 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=44.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010298 438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
..|+-+++.+..=|.+=..+|.-.-.+++-++++-.+|--||.+...-.++|++-|.++
T Consensus 85 ~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~ 143 (683)
T KOG1961|consen 85 RACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDL 143 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccc
Confidence 44555555555555555667888888888888999999999999998888888876554
No 469
>PRK07090 class II aldolase/adducin domain protein; Provisional
Probab=22.92 E-value=92 Score=31.54 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=50.7
Q ss_pred HHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcc-hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 347 IISRYGDIAANCNLESNSMRAYYLECLCSVVQELQST-SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 347 IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~ks-pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
|+..||=|+..-.+..-..+..|||-.|.+.-..... .+..|+.+++.++...+..-..+-+-.+|+..++.
T Consensus 180 LL~nHGvi~~G~~l~eA~~~~~~LE~~A~i~l~a~~~G~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (260)
T PRK07090 180 LLSHHGQLVAGKSIEEACVLALLIERAARLQLLAMAAGPIKPIPPELAREAHDWISTPKRSAATFAYYARRAL 252 (260)
T ss_pred EECCCCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCHHHHHHHHHhhcCcchhHhhHHHHHHHHH
Confidence 5678999999999999999999999999986554432 34789999998886654322222233445544443
No 470
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.88 E-value=2.8e+02 Score=24.48 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=16.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 433 IDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 433 le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
++++++-+++.++.+.+.++...++|..+.+++..
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544444444444444444
No 471
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=22.87 E-value=2.8e+02 Score=30.16 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 010298 388 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK--EV 465 (513)
Q Consensus 388 LS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKek--ev 465 (513)
++.+++.+ +.+++++..+..+ ......+.++..+..+...+..|++....+...++ .+
T Consensus 504 ~~~~~~~~-----------------~~~~~~~~~~~d~---~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~~~~l 563 (602)
T PF00012_consen 504 LSKEEIEE-----------------LKKKLEEMDEEDE---ERRERAEAKNELESYIYELRDKLEEDKDFVSEEEKKKKL 563 (602)
T ss_dssp SCHHHHHH-----------------HHHHHHHTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHHHHHH
T ss_pred cccccccc-----------------cccccchhhhhhh---hhhhccccHHHHHHHHHHHHHHHHhhhccCCHHHHHHHH
Q ss_pred hhhHHHHHHH--HHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 466 AGLKESVAKT--KARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 466 ~d~~erv~e~--k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
.+..+.+.+. ..-+.+++.+...|.+.+..+..++.+
T Consensus 564 ~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 564 KETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
No 472
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.86 E-value=4.7e+02 Score=22.15 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010298 410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQ-MNELALKEKEVAGLKESVAKTKARLSDLE 483 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~-leeL~qKekev~d~~erv~e~k~RL~~LE 483 (513)
+|=|-+.+.++...- ....++...+.+..++..-.+|.-- -+|+......+...++|++++..||..||
T Consensus 8 ~d~~~~~~~~~~~~~-----~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 8 FDDLAKQISEALPAA-----QGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.85 E-value=1.1e+02 Score=29.74 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010298 410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~es 486 (513)
|.=|+.||+.+.|.. -++|.-.+|-|....++.++.+|+-|++..+ ..++|+...+.+.
T Consensus 2 LeD~EsklN~AIERn-----------------alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~~ 60 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----------------ALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEKLRKANRKS 60 (166)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHCH----------------------------
T ss_pred HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhccc
No 474
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=22.74 E-value=1.2e+03 Score=29.04 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHh-hhhhhhH
Q 010298 355 AANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF-STQHQTI 433 (513)
Q Consensus 355 Asnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~-~~~~~~l 433 (513)
|....+.++.++==+.-++-.+-+++.+.+ -.+|.+++.+==+|+-..+.+.++....+. ++...-+
T Consensus 742 a~~~~p~~~~v~FN~a~v~kkla~s~lr~~------------k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~~~~~~ 809 (1018)
T KOG2002|consen 742 ARHLAPSNTSVKFNLALVLKKLAESILRLE------------KRTLEEVLEAVKELEEARRLFTELSKNGDKRISKTVIA 809 (1018)
T ss_pred HHHhCCccchHHhHHHHHHHHHHHHHHhcc------------cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q ss_pred HHHHHhhHHHHHHH--------HHHHHHH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 434 DAAKANCVNLLEST--------KKELESQ-----MNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 434 e~eKd~~e~~~e~~--------kkELEe~-----leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
..++. |..+|..+ .+..++. .++-+..+++..+.+.+.+|=+.|.-.|+..+....+ +.-.+
T Consensus 810 ~~a~~-c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e----~tk~~ 884 (1018)
T KOG2002|consen 810 QEAQL-CKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRE----RTKEI 884 (1018)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_pred hhc
Q 010298 501 TKF 503 (513)
Q Consensus 501 ~kF 503 (513)
.+|
T Consensus 885 ~~~ 887 (1018)
T KOG2002|consen 885 LKL 887 (1018)
T ss_pred Hhc
No 475
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=22.66 E-value=6.8e+02 Score=23.94 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhh
Q 010298 351 YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQH 430 (513)
Q Consensus 351 HPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~ 430 (513)
|||..++...+.+.+-..+...|=.--++|..+. ..+.-.|.-.|+.+..=...+....-..+.+.-.
T Consensus 32 HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~------------~Ra~Yll~l~g~~~~~~~~~~~d~efLme~me~r 99 (171)
T PRK05014 32 HPDKFANASERERLLAVQQAATINDAYQTLKHPL------------KRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELR 99 (171)
T ss_pred CcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChh------------HHHHHHHHhcCCccccccCCcCCHHHHHHHHHHH
Q ss_pred hhHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010298 431 QTIDAAKANC--VNLLESTKKELESQMNELALKEKEVAG--LKESVAKTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 431 ~~le~eKd~~--e~~~e~~kkELEe~leeL~qKekev~d--~~erv~e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
..++...... +..+..+..++++.++++.....+.-+ .-....+.-.||.=+..=...|.+....+
T Consensus 100 E~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~~ei~~~~~~l 169 (171)
T PRK05014 100 EELEDIEQSKDPEAALESFIKRVKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLRSEVEQLEEKL 169 (171)
T ss_pred HHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 476
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=22.63 E-value=5.5e+02 Score=28.16 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 010298 413 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 413 LekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~ 492 (513)
+-.+|.++.+. +++..-.+....+.+...+..+.++++..-..|.++|+.... |+..|..-|.+|.-..+-|.+.
T Consensus 386 ~~~~l~~~l~~--~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~---qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 386 ITTQIATNLKS--WLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKA---QFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHH--HHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 010298 493 I 493 (513)
Q Consensus 493 v 493 (513)
|
T Consensus 461 ~ 461 (462)
T PRK08032 461 F 461 (462)
T ss_pred h
No 477
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.59 E-value=6.4e+02 Score=24.91 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010298 424 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 424 re~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~ 488 (513)
.++..-++-|...=+.....|+.-.++|+.+++-|...+...+.+|.+...+..+|.+.+....+
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL~ 169 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYLQ 169 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 478
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=22.53 E-value=5.2e+02 Score=25.41 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred chhhhhhHHHHH---HHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 409 DVDWLRNILNEI---SEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 409 KVDWLekKLeEV---~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
+++||..-+..+ .-+..|-+.+..+.+-+++......+ |||+++..|..+-++.-+ ++|..|+.-
T Consensus 29 ~Insl~~~v~~l~nk~d~~~yknyk~ki~eLke~lK~~~NA---Eleekll~lq~lfq~Kl~---------aKL~aLKAa 96 (160)
T PF03978_consen 29 EINSLIEDVSKLNNKSDAEAYKNYKKKINELKEDLKDVSNA---ELEEKLLKLQKLFQDKLE---------AKLAALKAA 96 (160)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q ss_pred hhhHH
Q 010298 486 SNRLE 490 (513)
Q Consensus 486 ss~L~ 490 (513)
..+++
T Consensus 97 k~~i~ 101 (160)
T PF03978_consen 97 KQKIE 101 (160)
T ss_pred HHHhc
No 479
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.52 E-value=3.1e+02 Score=30.25 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 441 VNLLESTKKELESQMNELALKEKEVA------GLKESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~------d~~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
.++++.+..+|+++++.+.++..++. +.+.+++....++..|.....-|...+..++
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.46 E-value=2.3e+02 Score=33.41 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 010298 432 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 497 (513)
Q Consensus 432 ~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~k 497 (513)
+.+.+++.+.+.++.+.++|+.....|+-..=..+-=.+.++.-+++|.+++.+...|.+.|..++
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 481
>smart00338 BRLZ basic region leucin zipper.
Probab=22.45 E-value=3.7e+02 Score=21.33 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 452 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 452 Ee~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
+.....+...+.++.++.....++..++..|+.+...|...+
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.43 E-value=6.4e+02 Score=23.49 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHh---------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHH
Q 010298 413 LRNILNEISEAIEF---------STQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK-ARLSDL 482 (513)
Q Consensus 413 LekKLeEV~Eare~---------~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k-~RL~~L 482 (513)
|+..|.+....... ...+..+......+...++.+..........+......+..++......+ +.+..+
T Consensus 3 ~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~ 82 (136)
T PF04871_consen 3 LKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEA 82 (136)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHhhhhHHHHHHHhhhhhhhc
Q 010298 483 ELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 483 E~ess~L~k~v~~~kSKV~kF 503 (513)
+.+.-+|=..|.++-.|+.+|
T Consensus 83 q~EldDLL~ll~Dle~K~~ky 103 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKY 103 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHH
No 483
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.43 E-value=5.5e+02 Score=22.78 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAGL--KESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d~--~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
...++.+.+.+...-.-|.+.|.++... +..+.+++-+|.+++-+...|+..|..+...++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 484
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=22.42 E-value=9.9e+02 Score=25.85 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 414 RNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 414 ekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
++-++|+.-+++......-++-+-+.++.+-+..+++-++.|+.-.++-+++.+ +-..++-+=+|+.|....-+ .+
T Consensus 361 q~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeeklk~e~qkikelee-k~~eeedal~~all~~qeir---l~ 436 (445)
T KOG2891|consen 361 QKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEKLKAEEQKIKELEE-KIKEEEDALLLALLNLQEIR---LI 436 (445)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHH---HH
Q ss_pred HHhhhhhh
Q 010298 494 QATQSKVT 501 (513)
Q Consensus 494 ~~~kSKV~ 501 (513)
..+++|..
T Consensus 437 ~~lkek~k 444 (445)
T KOG2891|consen 437 AELKEKAK 444 (445)
T ss_pred HHHHHhhc
No 485
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=22.39 E-value=7.7e+02 Score=25.35 Aligned_cols=89 Identities=25% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------
Q 010298 403 VESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTK------ 476 (513)
Q Consensus 403 Le~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k------ 476 (513)
++.--+-||-|..|.+=+-++--.+...+.+-.+ +.++++++++|+..++|+..-.|+..-..--++.+
T Consensus 12 ~enpeilvdvL~~Rpeilye~l~kL~pwq~latk-----~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~ 86 (231)
T COG5493 12 LENPEILVDVLTQRPEILYEVLAKLTPWQQLATK-----QDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQ 86 (231)
T ss_pred HhCcHHHHHHHHhChHHHHHHHHhhchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred --------HHHHHHHHhhhhHHHHHHHh
Q 010298 477 --------ARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 477 --------~RL~~LE~ess~L~k~v~~~ 496 (513)
+++.+||.+.+.|.-+..-+
T Consensus 87 ~~~f~a~~edi~rlE~~i~~lgaRwGil 114 (231)
T COG5493 87 EEEFRATKEDIKRLETIITGLGARWGIL 114 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
No 486
>PHA01750 hypothetical protein
Probab=22.36 E-value=5.1e+02 Score=22.37 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 439 ~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
.+..+-...++-+.--++|.. .+|...++.++.+++-|.-+ |++.+.++|-||++
T Consensus 20 aIiqlYlKIKq~lkdAvkeIV--~~ELdNL~~ei~~~kikqDn-------l~~qv~eik~k~dk 74 (75)
T PHA01750 20 AIIQLYLKIKQALKDAVKEIV--NSELDNLKTEIEELKIKQDE-------LSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHhhcc
No 487
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=22.30 E-value=5.4e+02 Score=23.67 Aligned_cols=72 Identities=11% Similarity=0.248 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHH----HHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISE----AIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK 461 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~E----are~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qK 461 (513)
+-.+.++|..+..+.. |++.||-|.=++.-|+.... .. +.....++...++|++++++|.+.
T Consensus 38 R~Y~~~~l~~l~~I~~-lr~~G~sL~eI~~~l~~~~~~~~~~~-------------~~~~~~l~~~~~~l~~~i~~L~~~ 103 (140)
T PRK09514 38 RLYTEQDLQRLRFIRR-AKQLGFTLEEIRELLSIRLDPEHHTC-------------QEVKGIVDEKLAEVEAKIAELQHM 103 (140)
T ss_pred eeeCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcccCCcCCH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHH
Q 010298 462 EKEVAGLKES 471 (513)
Q Consensus 462 ekev~d~~er 471 (513)
+..+..+...
T Consensus 104 ~~~L~~~~~~ 113 (140)
T PRK09514 104 RRSLQRLNDA 113 (140)
T ss_pred HHHHHHHHHH
No 488
>PLN02281 chlorophyllide a oxygenase
Probab=22.25 E-value=2.9e+02 Score=31.59 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhhHHHHHH--HHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010298 413 LRNILNEIS--EAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLEL 484 (513)
Q Consensus 413 LekKLeEV~--Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ 484 (513)
|+.|..||+ .+|++ +-++++++||-...+||++.-.++---..|+.-.-++|+++|.
T Consensus 105 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (536)
T PLN02281 105 LHDKVVDVLNPLAREY---------------KSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEE 163 (536)
T ss_pred HhHHHHHHhhhHHHhh---------------hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
No 489
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.24 E-value=9.9e+02 Score=26.31 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010298 418 NEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMN---------------ELALKEKEVAGLKESVAKTKARLSDL 482 (513)
Q Consensus 418 eEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~le---------------eL~qKekev~d~~erv~e~k~RL~~L 482 (513)
++|.+.++-+.+.+....+-......++...+-|+.... .+.+..+-..-..+++.+...++.+|
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHhhhhhhhccc
Q 010298 483 ELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 483 E~ess~L~k~v~~~kSKV~kF~~ 505 (513)
+.+..++.+.+..++.++....+
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
No 490
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.22 E-value=4.7e+02 Score=21.91 Aligned_cols=62 Identities=16% Similarity=0.319 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010298 388 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALK 461 (513)
Q Consensus 388 LS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qK 461 (513)
.+.+||. ....+..|...||.+ .+|........+... ......++.....+|++++++|...
T Consensus 38 y~~~dv~-~l~~i~~l~~~g~~~-------~~i~~~l~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~ 99 (100)
T cd00592 38 YSEEDLE-RLRLIRRLRELGLSL-------KEIRELLDARDEELS----LAALLALLDEKLAELEEKIARLEAL 99 (100)
T ss_pred cCHHHHH-HHHHHHHHHHcCCCH-------HHHHHHHhcccccch----HHHHHHHHHHHHHHHHHHHHHHHHc
No 491
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=22.09 E-value=4.7e+02 Score=21.87 Aligned_cols=73 Identities=26% Similarity=0.326 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH-HHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE-SQMN---ELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELE-e~le---eL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
|+=+..+|.|+...-..+. ..++.....+....+ .... ++..-...+..++.|+..+..||..++..
T Consensus 16 l~~~~~~l~el~~sQ~~L~---------~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELL---------QQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHH
Q 010298 486 SNRLEQ 491 (513)
Q Consensus 486 ss~L~k 491 (513)
..+|.+
T Consensus 87 ~~~L~q 92 (92)
T PF14712_consen 87 ADKLQQ 92 (92)
T ss_pred HHhhcC
No 492
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.05 E-value=5.3e+02 Score=24.44 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010298 389 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL 468 (513)
Q Consensus 389 S~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~ 468 (513)
|..||..=..++.|=-+-|+|| .+.++.+.. .++..+.++.+.+|++...+|....+++..+
T Consensus 18 s~~dLahNL~v~~~R~dL~~KV-----~~~~~~~~l-------------k~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~L 79 (126)
T PF07028_consen 18 SNSDLAHNLRVTCYRSDLGSKV-----SQKKLLEEL-------------KNLSKIQESQRSELKELKQELDVLSKELQAL 79 (126)
T ss_pred cHHHHHhhhhhhhhHhhHHHHH-----HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 010298 469 KESV 472 (513)
Q Consensus 469 ~erv 472 (513)
+.-+
T Consensus 80 r~~~ 83 (126)
T PF07028_consen 80 RKEY 83 (126)
T ss_pred HHHH
No 493
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.04 E-value=3.1e+02 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
+++.+.+-.|||+++-.+. ..+.+++..+..|+.+..+|-..|-+++|
T Consensus 88 RDRFR~Rn~ELE~elr~~~----------~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQ----------QTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.99 E-value=2.4e+02 Score=23.57 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010298 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDL 482 (513)
Q Consensus 439 ~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~L 482 (513)
..+.++..+...++..-.++...+++...+..++.++++.|.++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=21.98 E-value=8.6e+02 Score=27.13 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH--------HHHHHHHH
Q 010298 388 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL--------ESQMNELA 459 (513)
Q Consensus 388 LS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkEL--------Ee~leeL~ 459 (513)
||.+++..+...+..+. .-|+++..+.|..... +..+..++..| +++.++|.
T Consensus 498 ls~~~~~~~~~~~~~~~----~~D~~~~~~~e~kn~l----------------Es~iy~~r~~l~~~~~~~~~~e~~~l~ 557 (595)
T TIGR02350 498 LSEEEIERMVKEAEANA----EEDKKRKEEIEARNNA----------------DSLAYQAEKTLKEAGDKLPAEEKEKIE 557 (595)
T ss_pred cCHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHH----------------HHHHHHHHHHHHHhhccCCHHHHHHHH
Q ss_pred HHHHHHhhh--HHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 460 LKEKEVAGL--KESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 460 qKekev~d~--~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
++..+..+| .....++++.+.+|+.....+...+
T Consensus 558 ~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 558 KAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF13514 AAA_27: AAA domain
Probab=21.96 E-value=1.1e+03 Score=28.68 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH-----------------
Q 010298 390 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE----------------- 452 (513)
Q Consensus 390 ~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELE----------------- 452 (513)
...|..+...+..++.+--+.+.|..++.++.... ..++.+.......+....++..
T Consensus 655 ~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~ 728 (1111)
T PF13514_consen 655 AALLEEAEALLEEWEQAAARREQLEEELQQLEQEL------EEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEA 728 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Q ss_pred ----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 453 ----SQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 453 ----e~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
+.++++.....++.+++.|+..|...+..++.....|-..+
T Consensus 729 ~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l 773 (1111)
T PF13514_consen 729 LEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERL 773 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 497
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.95 E-value=5.9e+02 Score=22.95 Aligned_cols=91 Identities=22% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHH----------
Q 010298 369 YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA---------- 438 (513)
Q Consensus 369 YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd---------- 438 (513)
+|+-|....+.|+.-- .+|...+.++..+..-+......-..-.
T Consensus 7 ~l~~l~~~~~~l~~~~--------------------------~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lv 60 (140)
T PRK03947 7 ELEELAAQLQALQAQI--------------------------EALQQQLEELQASINELDTAKETLEELKSKGEGKETLV 60 (140)
T ss_pred HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEE
Q ss_pred ------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 439 ------------------------------NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 439 ------------------------------~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
..+..++.+++.++..-+.+....+++.+.+.++.++...|.+|..+
T Consensus 61 plg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 61 PIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF14772 NYD-SP28: Sperm tail
Probab=21.92 E-value=5.3e+02 Score=22.36 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHH
Q 010298 413 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG-LKESVAKT 475 (513)
Q Consensus 413 LekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d-~~erv~e~ 475 (513)
+..+-.+|....+...-+.+++..+..++++|..+..=|.+...+|..++.+-.. ++....++
T Consensus 40 I~~~W~~i~~~~~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy~~~lr~q~~di 103 (104)
T PF14772_consen 40 INERWREILRKKKPQELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQYVKALRKQAEDI 103 (104)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 499
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.87 E-value=6.4e+02 Score=23.29 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 413 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL---ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 413 LekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkEL---Ee~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
|+.+=.|+.-.+. +...+...++.....+-.+..+. +....++...+.++++...|...+-+=|++=..+...|
T Consensus 25 lr~~E~E~~~l~~---el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 25 LRRLEGELASLQE---ELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHHHhh
Q 010298 490 EQIIQATQ 497 (513)
Q Consensus 490 ~k~v~~~k 497 (513)
..-|.++|
T Consensus 102 ~~Dv~DlK 109 (120)
T PF12325_consen 102 RADVQDLK 109 (120)
T ss_pred HHHHHHHH
No 500
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.86 E-value=6.8e+02 Score=25.21 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=0.0
Q ss_pred hh----hhhHHHHHHHHHHhhhhhhhH---------HHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHH
Q 010298 411 DW----LRNILNEISEAIEFSTQHQTI---------DAAKANCVNLLESTKKELESQM-------NELALKEKEVAGLKE 470 (513)
Q Consensus 411 DW----LekKLeEV~Eare~~~~~~~l---------e~eKd~~e~~~e~~kkELEe~l-------eeL~qKekev~d~~e 470 (513)
|| |+..|.++-+...-..+-..- ...|...+.+++=+.++|.+.. ..|.-....+..+++
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~ 174 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEE 174 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 010298 471 SVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k 491 (513)
+|.-+..+|..=+.+...|.|
T Consensus 175 QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 175 QVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Done!