Query 010298
Match_columns 513
No_of_seqs 121 out of 132
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 03:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 93.6 0.92 3.2E-05 47.0 13.9 57 444-500 525-581 (597)
2 2dfs_A Myosin-5A; myosin-V, in 91.0 1.8 6.1E-05 50.0 13.1 62 441-502 983-1048(1080)
3 1c1g_A Tropomyosin; contractIl 90.8 3.7 0.00013 36.3 12.4 19 471-489 84-102 (284)
4 3hnw_A Uncharacterized protein 89.8 3.6 0.00012 37.0 11.5 52 432-483 79-130 (138)
5 3vkg_A Dynein heavy chain, cyt 89.2 6.8 0.00023 50.2 17.1 22 367-389 1895-1916(3245)
6 3hnw_A Uncharacterized protein 89.0 4.4 0.00015 36.4 11.4 69 426-494 66-134 (138)
7 3mq9_A Bone marrow stromal ant 87.5 5.1 0.00017 40.6 12.3 68 409-485 398-465 (471)
8 1m1j_B Fibrinogen beta chain; 87.1 3.3 0.00011 44.0 10.9 52 329-381 40-92 (464)
9 3na7_A HP0958; flagellar bioge 86.9 3.8 0.00013 39.3 10.4 44 457-500 91-134 (256)
10 3na7_A HP0958; flagellar bioge 86.8 11 0.00037 36.1 13.5 21 458-478 120-140 (256)
11 3ol1_A Vimentin; structural ge 84.6 16 0.00055 31.7 12.3 14 405-418 45-58 (119)
12 1ic2_A Tropomyosin alpha chain 83.2 11 0.00039 30.5 10.1 66 430-502 8-73 (81)
13 3u1c_A Tropomyosin alpha-1 cha 82.4 15 0.00053 31.0 11.0 17 475-491 77-93 (101)
14 4etp_A Kinesin-like protein KA 81.4 3 0.0001 43.0 7.4 59 445-503 6-64 (403)
15 2dfs_A Myosin-5A; myosin-V, in 81.2 3.5 0.00012 47.6 8.6 10 22-31 453-462 (1080)
16 3ghg_A Fibrinogen alpha chain; 80.9 12 0.0004 40.7 11.8 81 373-467 62-142 (562)
17 1wle_A Seryl-tRNA synthetase; 80.1 14 0.00049 39.3 12.2 40 464-503 117-156 (501)
18 3mq7_A Bone marrow stromal ant 79.0 30 0.001 30.9 11.9 79 412-499 29-107 (121)
19 3qne_A Seryl-tRNA synthetase, 78.5 7.6 0.00026 41.4 9.5 37 467-503 75-111 (485)
20 1m1j_C Fibrinogen gamma chain; 77.4 12 0.00041 39.1 10.4 58 445-502 80-137 (409)
21 4h22_A Leucine-rich repeat fli 77.2 23 0.00079 30.9 10.5 70 425-501 13-82 (103)
22 2ve7_C Kinetochore protein NUF 76.8 17 0.00058 35.3 10.7 60 443-502 142-201 (250)
23 3gp4_A Transcriptional regulat 76.7 34 0.0012 30.1 11.8 29 386-415 39-67 (142)
24 3ghg_A Fibrinogen alpha chain; 76.5 8.3 0.00028 41.8 9.1 11 414-424 70-80 (562)
25 1i84_S Smooth muscle myosin he 76.2 9.7 0.00033 43.9 10.2 15 332-346 718-732 (1184)
26 3iv1_A Tumor susceptibility ge 76.1 21 0.00072 29.7 9.5 64 411-483 10-73 (78)
27 1c1g_A Tropomyosin; contractIl 75.3 42 0.0014 29.4 14.0 35 459-493 100-134 (284)
28 3oja_B Anopheles plasmodium-re 75.0 14 0.00048 38.2 10.2 40 466-505 540-579 (597)
29 3u59_A Tropomyosin beta chain; 74.8 37 0.0013 28.5 11.0 33 462-494 64-96 (101)
30 2b9c_A Striated-muscle alpha t 73.4 53 0.0018 29.7 12.4 46 457-502 81-126 (147)
31 3nmd_A CGMP dependent protein 72.7 11 0.00036 31.1 6.8 47 444-504 21-67 (72)
32 2dq0_A Seryl-tRNA synthetase; 72.6 34 0.0012 35.8 12.4 38 467-504 73-110 (455)
33 3uul_A Utrophin; spectrin repe 72.2 36 0.0012 27.3 10.8 6 411-416 16-21 (118)
34 1u5p_A Spectrin alpha chain, b 71.1 43 0.0015 29.7 11.2 22 339-360 33-54 (216)
35 3v6i_A V-type ATP synthase sub 70.7 61 0.0021 29.3 12.3 71 435-505 21-95 (187)
36 2w83_C C-JUN-amino-terminal ki 70.7 15 0.00052 30.6 7.3 60 421-487 16-75 (77)
37 3a7p_A Autophagy protein 16; c 70.2 61 0.0021 30.0 12.0 65 430-494 70-134 (152)
38 2jee_A YIIU; FTSZ, septum, coi 70.2 47 0.0016 27.8 10.4 14 412-425 10-23 (81)
39 1i84_S Smooth muscle myosin he 69.8 19 0.00066 41.5 10.7 9 79-87 480-488 (1184)
40 3uun_A Dystrophin; triple heli 69.5 41 0.0014 26.8 12.4 17 394-416 5-21 (119)
41 2b5u_A Colicin E3; high resolu 69.0 28 0.00094 37.8 10.8 63 442-504 314-376 (551)
42 2wtg_A Globin-like protein; me 69.0 39 0.0013 30.5 10.5 44 341-384 32-88 (159)
43 4ani_A Protein GRPE; chaperone 68.9 6.7 0.00023 37.8 5.7 57 457-513 60-116 (213)
44 1ses_A Seryl-tRNA synthetase; 68.6 22 0.00075 36.8 9.9 37 467-503 68-104 (421)
45 3u06_A Protein claret segregat 67.6 12 0.00042 38.7 7.7 46 458-503 19-64 (412)
46 2v71_A Nuclear distribution pr 67.2 78 0.0027 30.0 12.5 32 458-489 90-121 (189)
47 3swk_A Vimentin; cytoskeleton, 67.1 53 0.0018 27.2 11.5 79 413-497 5-83 (86)
48 2dc3_A Cytoglobin; myoglobin, 67.0 75 0.0026 28.9 12.9 66 341-413 46-127 (193)
49 1x79_B RAB GTPase binding effe 66.1 44 0.0015 29.4 9.8 76 386-467 16-91 (112)
50 2p22_C Protein SRN2; endosome, 64.9 32 0.0011 32.4 9.4 52 443-494 87-152 (192)
51 3lss_A Seryl-tRNA synthetase; 64.7 62 0.0021 34.4 12.5 35 469-503 109-144 (484)
52 3s4r_A Vimentin; alpha-helix, 64.3 63 0.0022 27.1 10.6 38 462-499 55-92 (93)
53 1nfn_A Apolipoprotein E3; lipi 63.9 92 0.0031 28.9 12.2 17 337-353 22-38 (191)
54 2wt7_B Transcription factor MA 63.7 43 0.0015 28.4 9.0 28 377-405 8-35 (90)
55 3ghg_B Fibrinogen beta chain; 63.1 16 0.00055 39.0 7.7 53 329-382 36-88 (461)
56 2dq3_A Seryl-tRNA synthetase; 62.8 41 0.0014 34.8 10.5 37 468-504 73-109 (425)
57 3o0z_A RHO-associated protein 61.3 82 0.0028 29.5 11.2 77 425-502 70-154 (168)
58 3tnu_B Keratin, type II cytosk 61.2 45 0.0015 29.0 9.0 14 411-424 11-24 (129)
59 3vem_A Helicase protein MOM1; 60.7 41 0.0014 29.9 8.6 33 478-512 80-112 (115)
60 1deq_A Fibrinogen (alpha chain 60.1 55 0.0019 34.3 10.8 15 411-425 95-109 (390)
61 1lwu_C Fibrinogen gamma chain; 59.9 18 0.00063 36.6 7.2 27 472-498 28-54 (323)
62 2oqq_A Transcription factor HY 59.8 23 0.00077 26.6 5.7 36 459-494 6-41 (42)
63 3lax_A Phenylacetate-coenzyme 59.1 4.1 0.00014 33.1 2.0 33 324-359 2-34 (109)
64 3s84_A Apolipoprotein A-IV; fo 58.6 48 0.0016 32.5 9.7 117 377-505 134-252 (273)
65 2fxo_A Myosin heavy chain, car 58.4 93 0.0032 27.1 13.3 42 462-503 82-123 (129)
66 2l5g_B Putative uncharacterize 57.7 17 0.0006 27.2 4.8 30 457-486 10-39 (42)
67 3r2p_A Apolipoprotein A-I; amp 57.6 35 0.0012 31.1 8.1 28 473-500 136-164 (185)
68 3oja_A Leucine-rich immune mol 57.3 78 0.0027 32.1 11.4 37 464-500 436-472 (487)
69 1jf3_A Monomer hemoglobin comp 57.2 27 0.00092 29.8 6.9 43 341-383 28-76 (147)
70 2b9c_A Striated-muscle alpha t 57.0 1.1E+02 0.0038 27.6 11.4 33 471-503 74-106 (147)
71 3tnu_A Keratin, type I cytoske 56.8 49 0.0017 28.8 8.6 14 411-424 13-26 (131)
72 3iv1_A Tumor susceptibility ge 56.0 76 0.0026 26.4 9.0 63 438-503 10-72 (78)
73 1mba_A Myoglobin; oxygen stora 55.3 28 0.00097 29.7 6.7 43 341-383 27-82 (147)
74 2ocy_A RAB guanine nucleotide 54.4 1.3E+02 0.0046 27.6 13.0 34 470-503 115-148 (154)
75 1it2_A Hemoglobin; hagfish, de 54.3 24 0.00083 30.5 6.2 42 341-382 35-88 (146)
76 2fxo_A Myosin heavy chain, car 54.0 1.1E+02 0.0038 26.6 14.1 46 448-496 78-123 (129)
77 3ghg_C Fibrinogen gamma chain; 53.9 54 0.0018 34.5 9.6 53 449-501 84-136 (411)
78 3pt8_B Hemoglobin III; oxygen 53.5 26 0.0009 30.1 6.3 42 341-382 28-83 (152)
79 1fzc_C Fibrin; blood coagulati 53.2 6.8 0.00023 39.7 2.7 49 454-502 2-50 (319)
80 2dq0_A Seryl-tRNA synthetase; 52.9 46 0.0016 34.8 9.0 26 463-488 76-101 (455)
81 3i00_A HIP-I, huntingtin-inter 52.5 55 0.0019 28.9 8.1 49 438-489 11-59 (120)
82 2v66_B Nuclear distribution pr 52.3 1.2E+02 0.0042 26.6 11.0 12 408-419 17-28 (111)
83 1gmj_A ATPase inhibitor; coile 51.7 86 0.003 26.4 8.7 29 456-484 51-79 (84)
84 2zs0_A Extracellular giant hem 51.4 33 0.0011 29.3 6.5 43 341-383 29-80 (140)
85 4emc_A Monopolin complex subun 50.9 54 0.0019 31.3 8.3 61 433-493 11-71 (190)
86 4hrt_B Hemoglobin B chain; oxy 50.8 21 0.00074 31.0 5.3 64 341-411 37-112 (152)
87 1q06_A Transcriptional regulat 50.7 48 0.0016 28.7 7.4 25 386-411 37-61 (135)
88 3pt8_A Hemoglobin II; oxygen c 50.3 22 0.00076 30.6 5.2 42 341-382 28-83 (152)
89 1ses_A Seryl-tRNA synthetase; 50.0 74 0.0025 32.8 9.9 27 462-488 70-96 (421)
90 4fla_A Regulation of nuclear P 49.8 1.5E+02 0.0052 26.9 13.0 40 451-490 101-141 (152)
91 4ad8_A DNA repair protein RECN 49.4 1.3E+02 0.0045 31.0 11.7 46 329-377 129-177 (517)
92 1gqe_A Release factor 2, RF2; 49.3 1.6E+02 0.0056 30.4 12.2 32 391-423 9-40 (365)
93 1q08_A Zn(II)-responsive regul 49.3 59 0.002 26.0 7.3 15 397-411 6-20 (99)
94 1gmj_A ATPase inhibitor; coile 49.1 80 0.0027 26.7 8.1 25 451-475 53-77 (84)
95 1wle_A Seryl-tRNA synthetase; 48.5 1.6E+02 0.0055 31.3 12.4 23 464-486 124-146 (501)
96 3htk_A Structural maintenance 48.2 81 0.0028 23.6 7.5 12 448-459 32-43 (60)
97 1yhu_C Hemoglobin B1A chain; g 47.0 56 0.0019 28.1 7.3 64 341-411 34-108 (148)
98 3vkg_A Dynein heavy chain, cyt 46.7 1.1E+02 0.0036 39.9 12.2 57 445-501 2017-2073(3245)
99 1hlm_A Hemoglobin (cyano Met); 46.3 28 0.00095 30.1 5.3 43 340-382 36-91 (159)
100 3u1c_A Tropomyosin alpha-1 cha 45.7 1.4E+02 0.0046 25.2 13.2 37 431-467 12-48 (101)
101 1sct_A Hemoglobin II (carbonmo 45.5 44 0.0015 28.8 6.4 43 341-383 35-88 (150)
102 3trt_A Vimentin; cytoskeleton, 45.5 1.1E+02 0.0037 24.0 8.2 62 444-505 7-77 (77)
103 1ic2_A Tropomyosin alpha chain 45.5 1.2E+02 0.004 24.4 10.3 33 448-480 40-72 (81)
104 1m1j_C Fibrinogen gamma chain; 45.3 2E+02 0.0069 30.0 12.3 12 392-403 39-50 (409)
105 2lhb_A Hemoglobin V (cyano Met 45.0 48 0.0016 28.5 6.5 43 341-383 35-91 (149)
106 2no2_A HIP-I, huntingtin-inter 44.5 1.5E+02 0.0052 25.4 10.4 47 443-489 55-101 (107)
107 3htk_A Structural maintenance 44.2 98 0.0033 23.1 8.1 29 447-475 24-52 (60)
108 2zs0_C Extracellular giant hem 44.0 49 0.0017 28.4 6.5 64 341-411 33-107 (147)
109 3gpv_A Transcriptional regulat 43.6 71 0.0024 28.1 7.5 28 386-414 53-80 (148)
110 1ci6_A Transcription factor AT 43.4 73 0.0025 24.8 6.7 34 461-494 28-61 (63)
111 1x9f_B Erythrocruorin, globin 43.3 51 0.0017 28.2 6.4 43 341-383 31-82 (145)
112 1deq_A Fibrinogen (alpha chain 43.0 1.6E+02 0.0056 30.8 11.0 7 448-454 115-121 (390)
113 2e7s_A RAB guanine nucleotide 42.5 32 0.0011 31.3 5.1 19 441-459 62-80 (135)
114 1yhu_D Hemoglobin B2 chain; gl 42.2 62 0.0021 27.9 6.8 43 341-383 33-84 (149)
115 1gdj_A Leghemoglobin (deoxy); 42.2 1.6E+02 0.0054 24.9 12.9 69 341-415 27-109 (153)
116 2bk9_A CG9734-PA; oxygen trans 41.9 62 0.0021 27.8 6.8 41 341-381 25-77 (153)
117 2nrl_A Myoglobin; transport pr 41.7 1.7E+02 0.0057 25.1 10.0 42 341-382 23-77 (147)
118 1yhu_B Giant hemoglobins B cha 41.6 51 0.0018 27.9 6.1 43 341-383 31-82 (144)
119 2xu6_A MDV1 coiled coil; prote 41.5 1.5E+02 0.005 24.5 8.4 44 448-501 23-66 (72)
120 1dkg_A Nucleotide exchange fac 41.4 54 0.0019 30.8 6.7 39 475-513 58-96 (197)
121 2efr_A General control protein 40.6 2.2E+02 0.0075 26.1 13.3 14 451-464 75-88 (155)
122 3lb2_A Dehaloperoxidase A; glo 40.5 36 0.0012 29.6 5.1 43 341-383 18-73 (137)
123 3uux_B Mitochondrial division 40.5 1.7E+02 0.0059 28.8 10.2 25 477-501 198-222 (242)
124 1m1j_A Fibrinogen alpha subuni 40.5 2.4E+02 0.0083 30.3 12.0 51 411-467 93-143 (491)
125 1x9f_A Globin IV, extracellula 40.1 53 0.0018 28.5 6.1 58 341-405 36-102 (151)
126 4fla_A Regulation of nuclear P 40.0 1.8E+02 0.0063 26.4 9.8 36 468-503 112-147 (152)
127 1sct_B Hemoglobin II (carbonmo 40.0 37 0.0013 29.3 5.0 42 341-382 36-88 (151)
128 2zs0_B Extracellular giant hem 39.9 63 0.0021 27.6 6.4 43 341-383 29-80 (142)
129 3etw_A Adhesin A; antiparallel 39.5 2E+02 0.007 25.5 11.2 36 474-509 72-108 (119)
130 1h97_A Globin-3; HET: HEM; 1.1 39.3 50 0.0017 28.7 5.8 42 341-382 29-83 (147)
131 2ocy_A RAB guanine nucleotide 39.2 2.3E+02 0.008 26.0 12.0 23 480-502 111-133 (154)
132 2vyw_A Hemoglobin; trematode, 39.2 64 0.0022 28.0 6.5 42 341-382 30-84 (148)
133 2vhb_A Hemoglobin; heme, respi 39.2 1.7E+02 0.006 24.6 10.5 44 341-384 26-72 (146)
134 1q08_A Zn(II)-responsive regul 38.8 88 0.003 25.0 6.8 8 417-424 19-26 (99)
135 3p8c_E Probable protein brick1 38.6 1.1E+02 0.0037 25.4 7.2 45 458-502 25-70 (75)
136 1kd8_B GABH BLL, GCN4 acid bas 38.5 45 0.0015 24.3 4.3 24 470-493 8-31 (36)
137 1hlb_A Hemoglobin (deoxy); oxy 38.1 20 0.00068 31.1 3.0 43 340-382 36-91 (158)
138 2a01_A Apolipoprotein A-I; fou 37.8 1.1E+02 0.0037 29.1 8.4 13 488-500 195-207 (243)
139 1m1j_B Fibrinogen beta chain; 37.8 3.6E+02 0.012 28.7 12.9 14 270-283 41-54 (464)
140 2yy0_A C-MYC-binding protein; 37.6 31 0.0011 26.4 3.7 11 470-480 40-50 (53)
141 1nfn_A Apolipoprotein E3; lipi 37.2 42 0.0014 31.2 5.2 18 484-501 165-182 (191)
142 2iak_A Bullous pemphigoid anti 36.8 2.1E+02 0.0071 26.0 9.8 81 340-420 51-143 (224)
143 3g46_A Globin-1; oxygen transp 36.7 67 0.0023 27.6 6.2 42 341-382 34-86 (146)
144 4dbg_B Ring finger protein 31; 36.1 94 0.0032 29.0 7.2 47 374-424 15-61 (162)
145 2wy4_A Single domain haemoglob 36.0 1.9E+02 0.0064 24.1 11.4 43 342-384 26-71 (140)
146 1b0b_A Hemoglobin; hemoprotein 35.7 47 0.0016 28.2 5.0 42 341-382 26-81 (142)
147 1cun_A Protein (alpha spectrin 35.6 2.2E+02 0.0076 24.8 13.5 20 339-358 30-49 (213)
148 3u59_A Tropomyosin beta chain; 35.4 1.9E+02 0.0066 24.0 13.4 22 431-452 12-33 (101)
149 3pp5_A BRK1, protein brick1; t 35.0 1.4E+02 0.0046 24.7 7.2 38 464-501 31-69 (73)
150 1deb_A APC protein, adenomatou 35.0 1.5E+02 0.005 23.2 7.0 32 469-500 23-54 (54)
151 1x3k_A Hemoglobin component V; 34.9 88 0.003 27.1 6.6 42 341-382 29-83 (152)
152 1t3j_A Mitofusin 1; coiled coi 34.7 1.5E+02 0.0051 25.5 7.8 51 439-489 40-90 (96)
153 4etp_A Kinesin-like protein KA 34.5 65 0.0022 33.1 6.6 35 441-475 23-57 (403)
154 1ith_A Hemoglobin (cyano Met); 34.5 45 0.0015 28.3 4.7 41 341-381 27-80 (141)
155 2lem_A Apolipoprotein A-I; lip 34.5 2.9E+02 0.0098 25.7 11.7 38 386-423 30-69 (216)
156 2c0k_A Hemoglobin; oxygen tran 34.4 73 0.0025 27.5 6.1 41 341-381 25-78 (151)
157 3mvc_A Globin protein 6; oxyge 34.2 1.9E+02 0.0066 25.4 8.9 44 341-384 28-79 (161)
158 4dk0_A Putative MACA; alpha-ha 33.8 1.6E+02 0.0055 28.3 9.0 17 496-512 148-164 (369)
159 1x9f_D Globin C, hemoglobin ch 33.8 86 0.0029 26.6 6.3 43 341-383 29-80 (140)
160 3gxs_A Phenylacetate-coenzyme 33.6 18 0.00062 29.6 1.9 33 325-360 3-35 (109)
161 2a01_A Apolipoprotein A-I; fou 33.5 3.2E+02 0.011 25.9 13.0 30 469-498 153-183 (243)
162 3uul_A Utrophin; spectrin repe 33.4 1.8E+02 0.0062 23.1 11.0 32 393-424 18-49 (118)
163 1yhu_A Hemoglobin A1 chain; gl 33.4 74 0.0025 27.4 5.9 43 341-383 29-80 (145)
164 1x46_A Globin chain, hemoglobi 32.9 87 0.003 26.8 6.2 42 341-382 27-81 (150)
165 1x9f_C Erythrocruorin, globin 32.8 69 0.0024 27.7 5.6 58 341-405 37-103 (153)
166 1jeb_A Hemoglobin zeta chain; 32.7 88 0.003 26.5 6.2 42 341-382 27-76 (142)
167 1ash_A Hemoglobin (OXY); oxyge 32.4 1.7E+02 0.0058 26.2 8.2 44 341-384 28-84 (150)
168 3mq7_A Bone marrow stromal ant 32.2 1.7E+02 0.0057 26.2 7.9 17 387-403 28-44 (121)
169 3ubc_A Hemoglobin-like flavopr 32.2 1E+02 0.0035 25.6 6.4 44 341-384 25-68 (131)
170 3lss_A Seryl-tRNA synthetase; 31.7 2.3E+02 0.0078 30.2 10.3 25 465-489 113-137 (484)
171 1sfc_D Protein (SNAP-25B), pro 31.7 2.1E+02 0.0072 23.3 8.7 39 468-506 48-86 (87)
172 3d1k_A Hemoglobin subunit alph 31.7 1.1E+02 0.0036 26.2 6.5 42 341-382 26-76 (142)
173 1fxk_A Prefoldin; archaeal pro 31.4 2.1E+02 0.0071 23.2 8.6 32 470-501 72-103 (107)
174 2v71_A Nuclear distribution pr 31.4 3.4E+02 0.012 25.7 15.9 14 391-404 49-62 (189)
175 4h22_A Leucine-rich repeat fli 31.3 2.6E+02 0.009 24.3 9.3 31 388-424 16-46 (103)
176 1bin_A Leghemoglobin A; heme, 31.2 49 0.0017 27.7 4.3 72 341-420 27-109 (143)
177 3qne_A Seryl-tRNA synthetase, 31.1 1.3E+02 0.0046 31.9 8.5 22 465-486 80-101 (485)
178 3kqg_A Langerin, C-type lectin 30.9 54 0.0018 28.5 4.6 35 451-485 4-38 (182)
179 1lhs_A Myoglobin; oxygen stora 30.8 35 0.0012 29.6 3.4 42 341-382 26-81 (153)
180 4dnd_A Syntaxin-10, SYN10; str 30.8 2.8E+02 0.0095 24.4 10.1 23 457-479 106-128 (130)
181 3mq9_A Bone marrow stromal ant 30.7 4.2E+02 0.015 26.5 14.2 57 447-503 402-469 (471)
182 3etw_A Adhesin A; antiparallel 30.4 2.4E+02 0.0081 25.0 8.6 45 450-494 13-58 (119)
183 2w72_C Human hemoglobin A; iro 30.3 60 0.002 27.6 4.7 42 341-382 26-75 (141)
184 1a6m_A Myoglobin; heme protein 29.9 2.7E+02 0.0091 23.9 11.0 43 341-383 26-82 (151)
185 2zqm_A Prefoldin beta subunit 29.8 1.3E+02 0.0043 24.8 6.5 7 397-403 40-46 (117)
186 2cly_A ATP synthase B chain, m 29.5 3.8E+02 0.013 25.7 11.9 44 467-510 156-200 (214)
187 2qyw_A Vesicle transport throu 29.2 2.5E+02 0.0086 23.5 8.3 9 476-484 62-70 (102)
188 1kd8_B GABH BLL, GCN4 acid bas 28.5 89 0.0031 22.7 4.5 25 448-472 7-31 (36)
189 3nr7_A DNA-binding protein H-N 28.3 1.8E+02 0.0062 24.2 7.1 10 409-418 25-34 (86)
190 3bom_A Hemoglobin subunit alph 28.3 1.1E+02 0.0039 26.1 6.2 61 341-411 27-98 (143)
191 3q8t_A Beclin-1; autophagy, AT 28.2 2.6E+02 0.009 23.4 12.6 33 472-504 62-94 (96)
192 3uun_A Dystrophin; triple heli 28.2 2.2E+02 0.0075 22.4 11.9 32 393-424 18-49 (119)
193 3bas_A Myosin heavy chain, str 28.1 2.5E+02 0.0085 23.0 10.4 27 472-498 58-84 (89)
194 2aze_B Transcription factor E2 27.7 73 0.0025 27.4 4.8 57 448-508 8-67 (106)
195 2pnv_A Small conductance calci 27.6 71 0.0024 23.8 4.0 28 466-493 12-39 (43)
196 1m1j_A Fibrinogen alpha subuni 27.4 4.5E+02 0.015 28.3 11.5 48 441-491 106-153 (491)
197 3d1k_B Hemoglobin subunit beta 27.4 91 0.0031 26.9 5.4 41 341-381 25-79 (146)
198 4dvy_P Cytotoxicity-associated 27.4 3E+02 0.01 30.6 10.3 76 390-466 714-800 (876)
199 1gqe_A Release factor 2, RF2; 27.3 5.3E+02 0.018 26.6 11.9 15 470-484 101-115 (365)
200 3bom_B Hemoglobin subunit beta 27.2 1.1E+02 0.0036 26.5 5.8 41 341-381 25-79 (147)
201 2xzr_A Immunoglobulin-binding 27.0 3.2E+02 0.011 23.9 9.1 58 438-495 51-108 (114)
202 1out_A Hemoglobin I; heme, oxy 26.6 1.2E+02 0.004 26.1 6.0 41 341-381 27-76 (143)
203 2r80_B Hemoglobin subunit beta 26.5 62 0.0021 27.8 4.2 41 341-381 25-79 (146)
204 2jyp_A Aragonite protein AP7; 26.4 13 0.00044 26.5 -0.1 8 74-81 7-14 (36)
205 2eqb_B RAB guanine nucleotide 26.2 3.1E+02 0.011 23.6 8.4 12 410-421 7-18 (97)
206 4g1v_A Flavohemoglobin; three 26.2 4E+02 0.014 26.1 10.5 43 342-384 27-72 (399)
207 3c9i_A Tail needle protein GP2 26.0 4.7E+02 0.016 25.6 13.0 63 439-501 81-143 (242)
208 2zs0_D Extracellular giant hem 26.0 2.9E+02 0.0098 23.9 8.4 59 341-406 33-98 (145)
209 1out_B Hemoglobin I; heme, oxy 25.9 92 0.0031 26.9 5.2 41 341-381 25-79 (146)
210 1xq5_A Hemoglobin alpha-1 chai 25.8 77 0.0026 27.1 4.6 41 341-381 27-76 (143)
211 2oif_A Horvu GLB1, non-legume 25.7 3.1E+02 0.011 23.3 10.9 68 341-416 34-118 (162)
212 2zvf_A Alanyl-tRNA synthetase; 25.5 1.7E+02 0.0058 25.6 6.9 19 410-428 6-24 (171)
213 3lay_A Zinc resistance-associa 25.5 2.2E+02 0.0075 26.4 7.9 14 470-483 113-126 (175)
214 1q1f_A Neuroglobin; globin fol 25.0 1.3E+02 0.0046 25.2 6.0 43 341-383 25-82 (151)
215 3r6n_A Desmoplakin; spectrin r 25.0 4.1E+02 0.014 27.7 10.7 51 393-446 92-151 (450)
216 1r8e_A Multidrug-efflux transp 24.9 1.6E+02 0.0055 27.2 7.0 24 387-411 44-67 (278)
217 1gs9_A Apolipoprotein E, APOE4 24.7 4E+02 0.014 24.2 9.7 30 474-503 132-162 (165)
218 4e81_A Chaperone protein DNAK; 24.7 4.3E+02 0.015 24.7 10.7 17 387-403 118-134 (219)
219 3bas_A Myosin heavy chain, str 24.6 2.9E+02 0.01 22.6 11.0 21 471-491 64-84 (89)
220 3qh9_A Liprin-beta-2; coiled-c 24.3 3.2E+02 0.011 23.0 8.1 13 440-452 45-57 (81)
221 3ilw_A DNA gyrase subunit A; D 24.2 4.2E+02 0.014 28.3 10.6 19 171-189 136-154 (470)
222 3u06_A Protein claret segregat 24.1 1.1E+02 0.0038 31.6 6.2 11 412-422 7-17 (412)
223 3ci9_A Heat shock factor-bindi 23.8 1.3E+02 0.0046 22.8 5.0 23 462-484 22-45 (48)
224 1gd2_E Transcription factor PA 23.7 1.3E+02 0.0045 24.2 5.3 11 448-458 31-41 (70)
225 1spg_A Hemoglobin; carbon mono 23.7 2E+02 0.0067 24.7 6.8 54 341-404 27-90 (144)
226 2zqm_A Prefoldin beta subunit 23.4 3.1E+02 0.01 22.4 11.4 36 468-503 75-110 (117)
227 1x79_B RAB GTPase binding effe 23.3 3.8E+02 0.013 23.5 9.1 24 471-494 46-69 (112)
228 2dq3_A Seryl-tRNA synthetase; 23.3 1.1E+02 0.0038 31.5 6.0 23 465-487 77-99 (425)
229 3ol1_A Vimentin; structural ge 23.3 3.6E+02 0.012 23.2 10.1 81 411-497 23-103 (119)
230 1dip_A Delta-sleep-inducing pe 23.2 47 0.0016 27.7 2.5 29 464-492 16-44 (78)
231 3he5_A Synzip1; heterodimeric 22.9 2.4E+02 0.0083 21.2 6.2 16 458-473 33-48 (49)
232 1lwu_C Fibrinogen gamma chain; 22.9 1.8E+02 0.0061 29.5 7.2 9 474-482 44-52 (323)
233 1v4x_B Hemoglobin beta chain; 22.7 97 0.0033 26.7 4.7 41 341-381 25-79 (146)
234 2r80_A Hemoglobin subunit alph 22.7 1.9E+02 0.0064 24.7 6.5 41 341-381 26-74 (141)
235 1zww_A SH3-containing GRB2-lik 22.7 4.8E+02 0.016 24.5 10.5 35 384-418 142-176 (256)
236 1cg5_A Protein (hemoglobin); o 22.7 1.2E+02 0.0041 25.9 5.2 40 341-380 26-74 (141)
237 1fxk_C Protein (prefoldin); ar 22.4 2.5E+02 0.0085 23.8 7.2 16 390-405 31-46 (133)
238 2aa1_B Hemoglobin beta-C chain 22.4 1.1E+02 0.0037 26.4 4.9 41 341-381 25-79 (146)
239 4gs5_A Acyl-COA synthetase (AM 22.4 55 0.0019 31.8 3.4 44 315-358 239-282 (358)
240 1go4_E MAD1 (mitotic arrest de 22.2 1.1E+02 0.0038 26.4 4.8 31 472-502 14-44 (100)
241 2fcw_A Alpha-2-macroglobulin r 22.1 4E+02 0.014 23.4 8.8 15 406-420 19-33 (109)
242 1l4a_D S-SNAP25 fusion protein 22.0 2.6E+02 0.009 22.9 6.9 38 468-505 49-86 (87)
243 3r2p_A Apolipoprotein A-I; amp 21.8 3.5E+02 0.012 24.4 8.5 9 376-384 30-38 (185)
244 2l7b_A Apolipoprotein E, APO-E 21.7 58 0.002 32.6 3.4 93 410-502 45-158 (307)
245 4b9q_A Chaperone protein DNAK; 21.6 4.3E+02 0.015 28.0 10.3 19 386-404 505-523 (605)
246 1gcv_B Hemoglobin; oxygen stor 21.5 1.6E+02 0.0055 25.3 5.8 42 341-382 25-70 (136)
247 2akf_A Coronin-1A; coiled coil 21.4 96 0.0033 21.8 3.4 23 462-484 5-27 (32)
248 4e61_A Protein BIM1; EB1-like 21.4 1.6E+02 0.0056 25.7 5.8 36 451-486 6-41 (106)
249 4etp_B Spindle POLE BODY-assoc 21.3 2.3E+02 0.0079 29.1 7.7 53 445-504 13-65 (333)
250 2ovc_A Potassium voltage-gated 21.2 89 0.003 22.2 3.3 23 474-496 7-29 (33)
251 4hrt_A Globin-2 A chain; oxyge 21.0 1.9E+02 0.0064 25.0 6.2 42 341-382 35-87 (150)
252 2kho_A Heat shock protein 70; 21.0 4.3E+02 0.015 28.0 10.1 19 386-404 505-523 (605)
253 3ok8_A Brain-specific angiogen 21.0 5.7E+02 0.02 24.7 12.7 21 490-510 157-177 (222)
254 1gvh_A Flavohemoprotein; oxido 20.9 3.8E+02 0.013 26.1 9.1 44 341-384 26-72 (396)
255 3fpp_A Macrolide-specific effl 20.7 3E+02 0.01 26.1 8.1 20 493-512 144-163 (341)
256 1g6u_A Domain swapped dimer; d 20.7 91 0.0031 23.4 3.4 24 479-502 22-45 (48)
257 2z0v_A SH3-containing GRB2-lik 20.4 3.9E+02 0.013 24.9 8.7 35 384-418 126-160 (240)
258 2xcs_B DNA gyrase subunit B, D 20.3 5.1E+02 0.017 29.0 10.7 14 73-86 262-275 (692)
259 3o0z_A RHO-associated protein 20.1 5.4E+02 0.018 24.0 12.5 70 424-493 51-127 (168)
260 1u4q_A Spectrin alpha chain, b 20.1 5.2E+02 0.018 23.9 12.8 134 341-479 141-317 (322)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.62 E-value=0.92 Score=46.98 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 444 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 444 ~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
....+++++++.+++...++++.+++.+++++++++.++..+.+.+.+-+..+..|+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555666666677777777888888888888877777655544444443
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.95 E-value=1.8 Score=49.95 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d~~erv----~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
+..+..+.+|+++.-+++....+|.++..++. .++.+.+..|+.+...|.+.+.++.+.+.+
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333 245577777888888888888888765443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.78 E-value=3.7 Score=36.32 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 010298 471 SVAKTKARLSDLELESNRL 489 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L 489 (513)
++..+..++..++.+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 84 DVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.77 E-value=3.6 Score=36.98 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=25.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010298 432 TIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 483 (513)
Q Consensus 432 ~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE 483 (513)
.++...+..++.+..++.+|.+...++....+++.++++++.++..++++||
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445555544444555555555555555555555555554
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.20 E-value=6.8 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhcchhhhcc
Q 010298 367 AYYLECLCSVVQELQSTSLMQMT 389 (513)
Q Consensus 367 s~YMn~Ll~LIetL~kspl~eLS 389 (513)
+.||+.|-.-...|.+.- ++|.
T Consensus 1895 ~syLeli~~y~~ll~~K~-~el~ 1916 (3245)
T 3vkg_A 1895 RHYLDFINQVVLLINEKR-DQLE 1916 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH
Confidence 346666665555555444 4443
No 6
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.99 E-value=4.4 Score=36.44 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=44.6
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 426 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 426 ~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
+++.+-.+..+-+..+..++.+.+|+...-++|...+-+.......+.+.+.++..|+.+..+|+..+.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555566666666677776666677766666666677777777777777777777665443
No 7
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.51 E-value=5.1 Score=40.59 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=31.4
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 409 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 409 KVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
...||+++|+|+.... .+++.+-..|-+.+-++..-||.+ .+|-++.+++...+|++....|.+++.+
T Consensus 398 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777665544 233333334445444444444322 3444444444444444444444444333
No 8
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.10 E-value=3.3 Score=44.02 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=17.7
Q ss_pred EEeccEEeecchHHHH-HHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHh
Q 010298 329 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ 381 (513)
Q Consensus 329 V~VnGFqVl~Sqv~iV-~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~ 381 (513)
|+-+||+++|..++.- ++=.+++.--|-+|+.-++.|=++|=. =|.|-++|.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~ 92 (464)
T 1m1j_B 40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLL 92 (464)
T ss_dssp -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHH
T ss_pred cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHH
Confidence 6689999999888775 444555555677777766655544422 366666665
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.92 E-value=3.8 Score=39.27 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
++....+++...+.++..+.+++.++......+...+..++.++
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.77 E-value=11 Score=36.12 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 010298 458 LALKEKEVAGLKESVAKTKAR 478 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~R 478 (513)
+..+++++.+...++.+.+++
T Consensus 120 ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 120 IKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.64 E-value=16 Score=31.73 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=5.6
Q ss_pred hcCcchhhhhhHHH
Q 010298 405 SAQIDVDWLRNILN 418 (513)
Q Consensus 405 ~aGfKVDWLekKLe 418 (513)
++.--++.++.|++
T Consensus 45 n~~~~~edfk~KyE 58 (119)
T 3ol1_A 45 NLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 33333444444443
No 12
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.23 E-value=11 Score=30.52 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 430 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 430 ~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
.++++.++++.....+.+..+++..-+.+.+.+.++ ..+.-|+..||.+.-+....+..+..|++.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev-------~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDEL-------VALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666655555555555555544444444444 446666677777777776677667666654
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.41 E-value=15 Score=31.05 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhhhHHH
Q 010298 475 TKARLSDLELESNRLEQ 491 (513)
Q Consensus 475 ~k~RL~~LE~ess~L~k 491 (513)
...++..+|.+...|..
T Consensus 77 ~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 77 AEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 14
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.38 E-value=3 Score=42.98 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 445 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
..++.||+...+++.++++++++++.++.++.++|.+.+.++-+|.-.+.++|.+|+=|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 34455555555566666777777777888899999999999999999999999887655
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.23 E-value=3.5 Score=47.63 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 010298 22 CGMACLEKIA 31 (513)
Q Consensus 22 C~~~C~~ki~ 31 (513)
|.-||-+|+.
T Consensus 453 cINy~NEkLQ 462 (1080)
T 2dfs_A 453 CINYANEKLQ 462 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhhHHHH
Confidence 4444444443
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.91 E-value=12 Score=40.73 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=37.8
Q ss_pred HHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 010298 373 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELE 452 (513)
Q Consensus 373 Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELE 452 (513)
|...|++|.+.- .+| ..--.++++....+. +=|+.+|....+....+.++. +.+++.+..++.+|.
T Consensus 62 ltkrINELKnqL-Edl-sKnsKdseqy~k~~~------E~Lr~rq~q~~dNdNtynE~S------~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 62 FTNRINKLKNSL-FEY-QKNNKDSHSLTTNIM------EILRGDFSSANNRDNTYNRVS------EDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHH-THH-HHHHHHHHHHHHHHH------HTTSSHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH-HhhchhHHHHHHHHH------HHHHHHHHhhhccchhHHHHH------HHHHHHHHHHHHHHH
Confidence 344455554444 444 333344444444444 556666666665554333333 123444444555555
Q ss_pred HHHHHHHHHHHHHhh
Q 010298 453 SQMNELALKEKEVAG 467 (513)
Q Consensus 453 e~leeL~qKekev~d 467 (513)
.++..|+.++.-|.+
T Consensus 128 nQlsnIrvLQsnLed 142 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 554444444443333
No 17
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.10 E-value=14 Score=39.30 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
++.++++++.+++++|.+|+.+...++..+..+=..+=+.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3344566667777777777777777766665554444444
No 18
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.98 E-value=30 Score=30.95 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 412 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 412 WLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k 491 (513)
-|+..|....+.- ...+.+-..|-+.+..++.-|+++ -++.++.+++++..|..+...|.+++++..+|..
T Consensus 29 lLq~qLTqAQe~l------~~~eaQAaTCNqTV~tL~~SL~~e---kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 29 LLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDAE---KAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555444332 223344455667777777666654 4444667778778888888888888888887766
Q ss_pred HHHHhhhh
Q 010298 492 IIQATQSK 499 (513)
Q Consensus 492 ~v~~~kSK 499 (513)
-...+...
T Consensus 100 ~~~~~~~r 107 (121)
T 3mq7_A 100 ENQVLSVR 107 (121)
T ss_dssp HHHHHHHH
T ss_pred hchhhhhH
Confidence 55544443
No 19
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.49 E-value=7.6 Score=41.38 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 467 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
++.+++.+++++|.+||.+...++..+..+=..+=+.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455666777777777777777766665555444444
No 20
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=77.40 E-value=12 Score=39.14 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 445 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
+.+.+...+|++++.+.|..+....++|..++..|..++.+...|.+.|..+..++..
T Consensus 80 e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 80 EQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 3445566667777777777777777777778887777777667776666666665543
No 21
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.19 E-value=23 Score=30.92 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=48.4
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 425 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 425 e~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
+-+-..++|+.+|.+..=.+..+|..||++-+.+++...+..+.... +.++......|...+..++..++
T Consensus 13 KAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re-------~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 13 KAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE-------FEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567888999999988899999999999988888888877773222 33333444445445555555544
No 22
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=76.84 E-value=17 Score=35.34 Aligned_cols=60 Identities=5% Similarity=-0.036 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 443 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 443 ~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
..++.-++.|+.++++.+++.+..+++.++.+++..+.+.+.+.....+.+..|.-+|.+
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~ 201 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSK 201 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 445555666667777777777777777778888877777776666555566666666654
No 23
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=76.65 E-value=34 Score=30.08 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=19.9
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRN 415 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLek 415 (513)
+-.+.+||..+ ..+..|.+.||-|+=.+.
T Consensus 39 R~Y~~~dl~~l-~~I~~lr~~G~sL~eIk~ 67 (142)
T 3gp4_A 39 RKFGAEDLRWI-LFTRQMRRAGLSIEALID 67 (142)
T ss_dssp BCBCHHHHHHH-HHHHHHHHTTCCHHHHHH
T ss_pred eeeCHHHHHHH-HHHHHHHHcCCCHHHHHH
Confidence 56788888865 455667899997654333
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.54 E-value=8.3 Score=41.85 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=4.8
Q ss_pred hhHHHHHHHHH
Q 010298 414 RNILNEISEAI 424 (513)
Q Consensus 414 ekKLeEV~Ear 424 (513)
+..|+++...+
T Consensus 70 KnqLEdlsKns 80 (562)
T 3ghg_A 70 KNSLFEYQKNN 80 (562)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 34445443333
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.17 E-value=9.7 Score=43.94 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=9.3
Q ss_pred ccEEeecchHHHHHH
Q 010298 332 GKYHVRASISSILQS 346 (513)
Q Consensus 332 nGFqVl~Sqv~iV~~ 346 (513)
.||.++..+.+++++
T Consensus 718 ~Gfp~R~~~~~F~~r 732 (1184)
T 1i84_S 718 QGFPNRIVFQEFRQR 732 (1184)
T ss_dssp HSCCEEEEHHHHHHH
T ss_pred hcCcccccHHHHHHH
Confidence 567776666665553
No 26
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=76.10 E-value=21 Score=29.72 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010298 411 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLE 483 (513)
Q Consensus 411 DWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE 483 (513)
|=|+.+|.|...-- .+.++.-+ .-...+...+++|+.++..|.+.+.++.. -|.-++++..+|+
T Consensus 10 DKLRrrl~E~~~q~-----qaEl~sLr-rT~~EL~~G~~KL~~mi~~l~~E~~~l~~---ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 10 DKLRWRMKEEMDRA-----QAELNALK-RTEEDLKKGHQKLEEMVTRLDQEVAEVDK---NIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 55666766543322 12222222 12344555677788887777766665555 5555666666555
No 27
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=75.30 E-value=42 Score=29.45 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=14.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 459 ALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 459 ~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
.+...++.++..++.+...+|..++.....+...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 134 (284)
T 1c1g_A 100 DRAQERLATALQKLEEAEKAADESERGMKVIESRA 134 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444433333333
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.95 E-value=14 Score=38.19 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 466 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 466 ~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
...++++.+++.++.+.+....++.+-+..++.++.+++.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666666666666666666666666655543
No 29
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=74.76 E-value=37 Score=28.50 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=14.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
+..+.++..++.+...++..+|.+..-|..+|.
T Consensus 64 ~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 64 SESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443
No 30
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=73.44 E-value=53 Score=29.72 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
.|...+.+.....+|......++.+|+.+...+..++.++...-++
T Consensus 81 Kl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eek 126 (147)
T 2b9c_A 81 KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEE 126 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3444444444455666666667777777666666666665544433
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.66 E-value=11 Score=31.13 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 444 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 444 ~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
+..++..|++..++|.+++..+++ ...+|.+.+.+ |..|++.+++|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~e-------LEk~L~ekd~e-------I~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDE-------LELELDQKDEL-------IQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHhh
Confidence 444455555555556555544333 45555554444 344677777774
No 32
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=72.55 E-value=34 Score=35.83 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 467 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
++++++.+++++|.+||.+...++..+..+=..+=+..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34556666777777777777777666665555554443
No 33
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=72.23 E-value=36 Score=27.28 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=3.2
Q ss_pred hhhhhH
Q 010298 411 DWLRNI 416 (513)
Q Consensus 411 DWLekK 416 (513)
+||..+
T Consensus 16 ~WL~e~ 21 (118)
T 3uul_A 16 TWLLSA 21 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566543
No 34
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=71.10 E-value=43 Score=29.68 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=16.3
Q ss_pred chHHHHHHHHhHcccccccCcc
Q 010298 339 SISSILQSIISRYGDIAANCNL 360 (513)
Q Consensus 339 Sqv~iV~~IFeKHPDIAsnf~l 360 (513)
.-+..|+.++.||-.+-.++..
T Consensus 33 ~dl~~v~~ll~kh~~le~~i~~ 54 (216)
T 1u5p_A 33 KDLASVNNLLKKHQLLEADISA 54 (216)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999877666543
No 35
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=70.69 E-value=61 Score=29.26 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH---HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 435 AAKANCVNLLESTKKELESQMNELALK-EKEVAGLKESV---AKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 435 ~eKd~~e~~~e~~kkELEe~leeL~qK-ekev~d~~erv---~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
+.+...+.+++..+++.+...++..++ +++.....+|+ ..+..|+..|.....=+...+..++.++..|.+
T Consensus 21 eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~ 95 (187)
T 3v6i_A 21 EAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREALEALPQ 95 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 334444566666666655554433222 23333322222 245666666776666677777777777777754
No 36
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=70.66 E-value=15 Score=30.62 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=30.2
Q ss_pred HHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 010298 421 SEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN 487 (513)
Q Consensus 421 ~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess 487 (513)
.|..+++.-+-.+...|+++-..++++--|-+....||...++... .+..|+.+||.+..
T Consensus 16 ~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~-------r~~~ri~elEeElk 75 (77)
T 2w83_C 16 LENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKL-------KLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 4666777777778888877666666655554444444443333333 35556666665543
No 37
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.25 E-value=61 Score=30.01 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=45.7
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 430 HQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 430 ~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
...+..+....+..+..+..+|+++-+.+.....|+.-++-+...+.++|..|+.+...|=++.-
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666677777777777777777777777888888888888888887755543
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.22 E-value=47 Score=27.80 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.3
Q ss_pred hhhhHHHHHHHHHH
Q 010298 412 WLRNILNEISEAIE 425 (513)
Q Consensus 412 WLekKLeEV~Eare 425 (513)
=|+.|+....+.+.
T Consensus 10 qLE~KIq~avdtI~ 23 (81)
T 2jee_A 10 KLEAKVQQAIDTIT 23 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445444444443
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=69.84 E-value=19 Score=41.51 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.2
Q ss_pred hhHHHhhhh
Q 010298 79 CGERCFKRN 87 (513)
Q Consensus 79 C~e~C~~~i 87 (513)
|-.||.+++
T Consensus 480 ciNy~nEkL 488 (1184)
T 1i84_S 480 CINYTNEKL 488 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 40
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=69.54 E-value=41 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=8.3
Q ss_pred HHHHHHHhHHHhcCcchhhhhhH
Q 010298 394 KEMMAVLKDVESAQIDVDWLRNI 416 (513)
Q Consensus 394 ~ea~~~L~dLe~aGfKVDWLekK 416 (513)
..-...|.+|. +||..+
T Consensus 5 ~~F~~~l~el~------~WL~~~ 21 (119)
T 3uun_A 5 DRYQTALEEVL------SWLLSA 21 (119)
T ss_dssp HHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHH------HHHHHH
Confidence 33344445554 666544
No 41
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=69.03 E-value=28 Score=37.76 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 442 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 442 ~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
+-++.+++++|+-..||.+.++.++..++|+...-.=+..+.++.-.+.++|.++.-=+++|.
T Consensus 314 hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 314 HPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 345556666776667777778888887777777777777777777778888888887777775
No 42
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=68.97 E-value=39 Score=30.47 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHHHHHHHhHcccccccCc----------ccchhHH---HHHHHHHHHHHHHHhcch
Q 010298 341 SSILQSIISRYGDIAANCN----------LESNSMR---AYYLECLCSVVQELQSTS 384 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~----------lKs~~lR---s~YMn~Ll~LIetL~ksp 384 (513)
..+..++|+.|||+..=|. .+|+.|+ ...|..|..+|..|....
T Consensus 32 ~~fy~~LF~~~Pe~r~lF~~~~~v~~~d~~~s~~f~~q~~rl~~aL~~~v~~lDd~~ 88 (159)
T 2wtg_A 32 NAFYRYFFTNFPDLRVYFKGAEKYTADDVKKSERFDKQGQRILLACHLLANVYTNEE 88 (159)
T ss_dssp HHHHHHHHHHCGGGGGGSTTCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHChhHHHHccCcccCCHHhhhcCHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4678999999999999998 5677664 567777777888776554
No 43
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=68.86 E-value=6.7 Score=37.76 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
++...+.++.+++.++.++++++-++..+...+.++..-=+....+|...+|+-+||
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LL 116 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLL 116 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666677788888999998888888888888888888888888887765
No 44
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=68.63 E-value=22 Score=36.77 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 467 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
++++++.+++++|.+|+.+...++..+..+=..+=+.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455556666666666666666665555444444333
No 45
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.57 E-value=12 Score=38.74 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+.+.+.++++..+.+.+++++|.+.++++-+|.-.|.+++-.|+=|
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3333444444455777788889999999999999999998877644
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.19 E-value=78 Score=30.02 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 458 LALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
+..+++++..++.....++.+|..||...-+|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444455555555555555555444444
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.09 E-value=53 Score=27.16 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 010298 413 LRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 413 LekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~ 492 (513)
|+.+++.+.-.+ +.++.+.+|....++..+.+.|.++.-=...|.++.-++.-+-+.---=++||.+..-|..-
T Consensus 5 Lr~qi~~l~~e~------~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 5 LRRQVDQLTNDK------ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666555444 45566677777777777777776655444444444444444443333334555555555555
Q ss_pred HHHhh
Q 010298 493 IQATQ 497 (513)
Q Consensus 493 v~~~k 497 (513)
|.++|
T Consensus 79 l~fLk 83 (86)
T 3swk_A 79 IAFLK 83 (86)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 48
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=67.02 E-value=75 Score=28.87 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=45.2
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH--
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE-- 404 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe-- 404 (513)
..++.++|+.||++-.-|.- .|+.++. .+|+.|..+|..|.... .|..+...|...=
T Consensus 46 ~~~y~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~Ldd~~-------~l~~~l~~L~~~H~~ 118 (193)
T 2dc3_A 46 VAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPD-------KVSSVLALVGKAHAL 118 (193)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCCHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHhccCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHHH
Confidence 57899999999999888864 5666655 57888888887775432 4556666665544
Q ss_pred hcCcchhhh
Q 010298 405 SAQIDVDWL 413 (513)
Q Consensus 405 ~aGfKVDWL 413 (513)
..||+-+-.
T Consensus 119 ~~gV~p~~f 127 (193)
T 2dc3_A 119 KHKVEPVYF 127 (193)
T ss_dssp TSCCCHHHH
T ss_pred HcCCCHHHH
Confidence 346655443
No 49
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.08 E-value=44 Score=29.44 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=39.3
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 465 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev 465 (513)
.+|.+ +|..+...-.+|++. |.+++=+-..+--.+..+.+..+.............+..+.++|..|..-.+.|
T Consensus 16 ~ql~~-qL~k~~~~r~~Le~~-----w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 16 RQAND-QLEKTMKDKQELEDF-----IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHH-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 666677777777754 666655544444444444444444444344444444555555555555544444
Q ss_pred hh
Q 010298 466 AG 467 (513)
Q Consensus 466 ~d 467 (513)
++
T Consensus 90 ~~ 91 (112)
T 1x79_B 90 SE 91 (112)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 50
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=64.87 E-value=32 Score=32.43 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHHHH----HHHHHhhhhHHHHHH
Q 010298 443 LLESTKKELESQMNELALKEKEVAGLKESV----------AKTKARL----SDLELESNRLEQIIQ 494 (513)
Q Consensus 443 ~~e~~kkELEe~leeL~qKekev~d~~erv----------~e~k~RL----~~LE~ess~L~k~v~ 494 (513)
.++..++.++++++++.+.+.+......+. ..+..|| .+.|.++..|.+.+.
T Consensus 87 ~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 87 DLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455566666666665555553321111 1224444 455666666655443
No 51
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=64.73 E-value=62 Score=34.45 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=20.7
Q ss_pred HHH-HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 469 KES-VAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 469 ~er-v~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
.++ ..+++++|.+|+.+...++..+..+=..+-+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444 55666677777766666666655554444444
No 52
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.32 E-value=63 Score=27.06 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK 499 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSK 499 (513)
+.++.+++.+|.+...-=++|+.+...|...+..+|.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555444455555555555555555554
No 53
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=63.94 E-value=92 Score=28.89 Aligned_cols=17 Identities=6% Similarity=-0.125 Sum_probs=9.6
Q ss_pred ecchHHHHHHHHhHccc
Q 010298 337 RASISSILQSIISRYGD 353 (513)
Q Consensus 337 l~Sqv~iV~~IFeKHPD 353 (513)
..|+.+-|+..|.-|=|
T Consensus 22 ~~s~~e~v~~~~~~y~~ 38 (191)
T 1nfn_A 22 SGQRWELALGRFWDYLR 38 (191)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 55666766666654433
No 54
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=63.68 E-value=43 Score=28.44 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=15.1
Q ss_pred HHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 010298 377 VQELQSTSLMQMTKAKVKEMMAVLKDVES 405 (513)
Q Consensus 377 IetL~kspl~eLS~~dL~ea~~~L~dLe~ 405 (513)
|.+|+... ..||.+++..+-..=.-|++
T Consensus 8 VreLN~~L-~gls~eev~~lKq~RRtlKN 35 (90)
T 2wt7_B 8 VRELNRHL-RGFTKDEVIRLKQKRRTLKN 35 (90)
T ss_dssp HHHHHTTC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhhhh
Confidence 34555544 66777666655444444443
No 55
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=63.14 E-value=16 Score=38.95 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=20.6
Q ss_pred EEeccEEeecchHHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhc
Q 010298 329 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQS 382 (513)
Q Consensus 329 V~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~k 382 (513)
|+-+||..+|..+.....-.++-+==|-+|+.-+..|=++| =.=|+|-.+|.+
T Consensus 36 ~s~~~y~~~~~~~~~~~~~~~~~~pd~g~c~~~~~~fG~yC-PTtCglad~L~k 88 (461)
T 3ghg_B 36 ISGGGYRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLC-PTGCQLQEALLQ 88 (461)
T ss_dssp ----------------------CCCCCCCCBCSSTTTCBCE-ECHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCccccccccccCCCCCCccccCcccCCcC-CCcchHHHHHHh
Confidence 44589999999988877777766655888998888876644 233666666643
No 56
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=62.75 E-value=41 Score=34.77 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
+++++.+++++|.+|+.+...++..+..+-..+=+..
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4567777788888888888877777766655554443
No 57
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=61.33 E-value=82 Score=29.49 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=35.7
Q ss_pred HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhhhhHHH----HHHHh
Q 010298 425 EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQ----IIQAT 496 (513)
Q Consensus 425 e~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~----~erv~e~k~RL~~LE~ess~L~k----~v~~~ 496 (513)
+++.-+..++.++.++. .+.....+|+..+..|....+.++.- ...-...-+||..||.+.+.++. -+..+
T Consensus 70 e~~~LQa~L~qEr~~r~-q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRG-HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555666666665432 23333334333333333222222221 11233446677777777666652 24445
Q ss_pred hhhhhh
Q 010298 497 QSKVTK 502 (513)
Q Consensus 497 kSKV~k 502 (513)
+.+.++
T Consensus 149 Q~~~eq 154 (168)
T 3o0z_A 149 QQRLEQ 154 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.16 E-value=45 Score=28.98 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 010298 411 DWLRNILNEISEAI 424 (513)
Q Consensus 411 DWLekKLeEV~Ear 424 (513)
.|-+.|++++....
T Consensus 11 ~~y~~K~eel~~~~ 24 (129)
T 3tnu_B 11 SWYQTKYEELQQTA 24 (129)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 47778877776444
No 59
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=60.74 E-value=41 Score=29.88 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhc
Q 010298 478 RLSDLELESNRLEQIIQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 478 RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~l 512 (513)
.|.++|.+...-.+.+..+..|| |.+++|+|.|
T Consensus 80 ~lqe~ese~~~kkK~le~~~~kV--~mNk~LAe~F 112 (115)
T 3vem_A 80 KFHEVEAEHNTRTTKIEKDKNLV--IMNKLLANAF 112 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46778888888888888888888 5567777765
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.14 E-value=55 Score=34.26 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHHHHH
Q 010298 411 DWLRNILNEISEAIE 425 (513)
Q Consensus 411 DWLekKLeEV~Eare 425 (513)
+-|+.+|..+...--
T Consensus 95 ~~lk~~~~q~~dndn 109 (390)
T 1deq_A 95 ELMRGDFAKANNNDN 109 (390)
T ss_pred HHHHHHHHhhccchH
Confidence 445566655554443
No 61
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=59.90 E-value=18 Score=36.63 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 472 VAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 472 v~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
|..+++.|..++....+|.+.|..+..
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 62
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.76 E-value=23 Score=26.59 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=26.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 459 ALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 459 ~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
...|..+++...+..+..+|++-|+.|..-|-|++.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 334555566666888899999999998888877653
No 63
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=59.08 E-value=4.1 Score=33.14 Aligned_cols=33 Identities=6% Similarity=0.146 Sum_probs=26.9
Q ss_pred cccceEEeccEEeecchHHHHHHHHhHcccccccCc
Q 010298 324 VISDSVSVGKYHVRASISSILQSIISRYGDIAANCN 359 (513)
Q Consensus 324 vvsEtV~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~ 359 (513)
.-.++|-|+|+.|-|++++ .++..||+++..+.
T Consensus 2 rADDmIiv~G~nv~P~eIE---~vl~~~p~v~~~~v 34 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIE---TILLQFKELGSDYL 34 (109)
T ss_dssp GGGSCEEETTEEECHHHHH---HHHHTCTTEEEEEE
T ss_pred CcCEEEEECCEEECHHHHH---HHHHhCCCcccceE
Confidence 3456899999999999988 56889999976543
No 64
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=58.61 E-value=48 Score=32.51 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 010298 377 VQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMN 456 (513)
Q Consensus 377 IetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~le 456 (513)
+++|...- .-+.++--..+...+..|. .=|++...++.+.. ...+++=+...+-..+.++..|+..++
T Consensus 134 leeLr~~l-~P~ae~~~~kl~~~~e~L~------~ql~~~a~~L~~~l-----~~~~eeLr~~L~p~ae~lr~~l~~~~e 201 (273)
T 3s84_A 134 VEELRRSL-APYAQDTQEKLNHQLEGLT------FQMKKNAEELKARI-----SASAEELRQRLAPLAEDVRGNLRGNTE 201 (273)
T ss_dssp HHHHHHHH-GGGCSSCHHHHHHHHHHHH------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTSSSCHH
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhhhccc
Q 010298 457 ELALKEKEVAG-LKESVAKTKARLSDLE-LESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 457 eL~qKekev~d-~~erv~e~k~RL~~LE-~ess~L~k~v~~~kSKV~kF~~ 505 (513)
+|.....+... ++.++++.+.+|.-+= +....|.+.+..++-||.-|.+
T Consensus 202 ~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~~~~~ 252 (273)
T 3s84_A 202 GLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAG 252 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhCcchh
No 65
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.44 E-value=93 Score=27.06 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=26.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+..+.++.+|+.+..++...|...-.+|...+..++..++-.
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666777777777777777777777776665543
No 66
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.69 E-value=17 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010298 457 ELALKEKEVAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL~~LE~es 486 (513)
.+.....|++..+++|.+.+.||.+||.-.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445666667778888888888888654
No 67
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=57.65 E-value=35 Score=31.12 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=15.0
Q ss_pred HHHHHHHHHH-HHhhhhHHHHHHHhhhhh
Q 010298 473 AKTKARLSDL-ELESNRLEQIIQATQSKV 500 (513)
Q Consensus 473 ~e~k~RL~~L-E~ess~L~k~v~~~kSKV 500 (513)
++++.+|.-+ +...++|.+++..+|..+
T Consensus 136 e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 136 HELQEKLSPLGEEMRDRARAHVDALRTHL 164 (185)
T ss_dssp TTTTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444332 455666666666666654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.35 E-value=78 Score=32.05 Aligned_cols=37 Identities=3% Similarity=0.039 Sum_probs=20.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
+++..++++..++++=.+++.+..++...+..++-++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3333444566666655556666666655555555443
No 69
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=57.24 E-value=27 Score=29.76 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHHhHcccccccCcc---cchhHH---HHHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL---ESNSMR---AYYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l---Ks~~lR---s~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.++ ..+|..|..+|..|...
T Consensus 28 ~~~y~rlf~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 76 (147)
T 1jf3_A 28 KECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDE 76 (147)
T ss_dssp HHHHHHHHHHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHhChhHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 56899999999999887764 456777 58999999998877544
No 70
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=57.03 E-value=1.1e+02 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+..+..-+|+-++.+..+...+...+.+|+..+
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~eL 106 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAEL 106 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 71
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.80 E-value=49 Score=28.85 Aligned_cols=14 Identities=14% Similarity=0.584 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 010298 411 DWLRNILNEISEAI 424 (513)
Q Consensus 411 DWLekKLeEV~Ear 424 (513)
.|-+.|++++....
T Consensus 13 ~~y~~K~eel~~~~ 26 (131)
T 3tnu_A 13 EWFFTKTEELNREV 26 (131)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 47778877776544
No 72
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=56.02 E-value=76 Score=26.38 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=44.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
|.+++++.+....-..+|+-|.+-+.+..+=+.++.+|=.| |+.+...+.+.|..++-|-...
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~---l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTR---LDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777778888888888877777777554 5566677777888888776543
No 73
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=55.33 E-value=28 Score=29.69 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=33.3
Q ss_pred HHHHHHHHhHcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l----------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~ 82 (147)
T 1mba_A 27 LDFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANA 82 (147)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCchHHHhhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 47889999999999988853 4556666 5788888888887644
No 74
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.37 E-value=1.3e+02 Score=27.65 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 470 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 470 erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
.|+..++.+|.+.+.-...+..-+..||.=|.+.
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555544443
No 75
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=54.32 E-value=24 Score=30.53 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHhHcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l---------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 88 (146)
T 1it2_A 35 LNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDN 88 (146)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999998864 7888875 566777777766643
No 76
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=54.01 E-value=1.1e+02 Score=26.58 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
+.+|+..+.+|.....+..+ +..++...-..|+.+...|.+-|.++
T Consensus 78 k~eLe~~l~el~~rleeeee---~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEE---MNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444433333 33334344444444555554444443
No 77
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=53.92 E-value=54 Score=34.46 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 449 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 449 kELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
+.-.+||+|..+.+.-+......|.++++-|.........|.+.|..+..++.
T Consensus 84 q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 84 LKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334555555555555554555555655555555555555555555555553
No 78
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=53.53 E-value=26 Score=30.13 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|.- .|+.++. .+|..|..+|..|..
T Consensus 28 ~~~y~~lF~~~P~~k~~F~~~f~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ldd 83 (152)
T 3pt8_B 28 TNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKAQSLVFCNGMSSFVDNLDD 83 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhhHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999988874 6777776 577777777776643
No 79
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=53.19 E-value=6.8 Score=39.73 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 454 QMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 454 ~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
||+||.+.|..|....++|..+++.|..++.+...|++.|..+..++..
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777777777777777777777777777777776666666666543
No 80
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.86 E-value=46 Score=34.81 Aligned_cols=26 Identities=4% Similarity=0.167 Sum_probs=11.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010298 463 KEVAGLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 463 kev~d~~erv~e~k~RL~~LE~ess~ 488 (513)
++++++++++.++.+.|.+++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555554444433
No 81
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.55 E-value=55 Score=28.88 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
+..+..|+.++.|++..-.+|....- +.+..|.++++|+.+||.+...-
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777765555554433 34457788888888888665553
No 82
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=52.27 E-value=1.2e+02 Score=26.56 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=6.0
Q ss_pred cchhhhhhHHHH
Q 010298 408 IDVDWLRNILNE 419 (513)
Q Consensus 408 fKVDWLekKLeE 419 (513)
+.+|=++.|+..
T Consensus 17 ~E~e~~k~K~~~ 28 (111)
T 2v66_B 17 YEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 83
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=51.72 E-value=86 Score=26.45 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 010298 456 NELALKEKEVAGLKESVAKTKARLSDLEL 484 (513)
Q Consensus 456 eeL~qKekev~d~~erv~e~k~RL~~LE~ 484 (513)
++|..-.+++.+..+.|...+.+|.+|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555556666666653
No 84
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=51.42 E-value=33 Score=29.34 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHhHcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~------lKs~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|...
T Consensus 29 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~~ 80 (140)
T 2zs0_A 29 RDLFSELFNIQGSSRALFSGVGVDDMNSAAFTAHCLRVTGALNRLISQLDQQ 80 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHCHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3688999999999987774 34677765 5677777777777543
No 85
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.91 E-value=54 Score=31.32 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=34.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 433 IDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 433 le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
+++.-++.+.+|..+-.|..-.-++|..+..|++.+++++...++....++...++-..++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3444566667777777766666666777777777777777777777766665554443333
No 86
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=50.81 E-value=21 Score=31.00 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=42.5
Q ss_pred HHHHHHHHhHcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH-hcCc
Q 010298 341 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE-SAQI 408 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l--------Ks~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe-~aGf 408 (513)
..+..++|+.||++-.-|.- .|+.++. .+|..|..+|..|.... .|..+...|...= .-|+
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H~~~gV 109 (152)
T 4hrt_B 37 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVE-------RLKCVVEKFAVNHINRQI 109 (152)
T ss_dssp HHHHHHHHHHCTHHHHHTGGGCCCC---CCHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHCHhHHHhhHHhCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHhhCCC
Confidence 57889999999999776664 7888777 48888888888775422 4445554444332 3344
Q ss_pred chh
Q 010298 409 DVD 411 (513)
Q Consensus 409 KVD 411 (513)
+-+
T Consensus 110 ~p~ 112 (152)
T 4hrt_B 110 SAD 112 (152)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 87
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=50.72 E-value=48 Score=28.74 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=18.2
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchh
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
+-.+.+||..+. .+..|++.||.|+
T Consensus 37 R~Y~~~dl~~l~-~I~~lr~~G~sl~ 61 (135)
T 1q06_A 37 RTYTQQHLNELT-LLRQARQVGFNLE 61 (135)
T ss_dssp EECCHHHHHHHH-HHHHHHHTTCCHH
T ss_pred eeeCHHHHHHHH-HHHHHHHCCCCHH
Confidence 457888887554 4556788999876
No 88
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=50.29 E-value=22 Score=30.62 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=32.0
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 28 ~~~y~rlF~~~P~~k~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 83 (152)
T 3pt8_A 28 QGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDD 83 (152)
T ss_dssp HHHHHHHHHHCGGGGGGGHHHHTTSCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHHHcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999888875 6777765 567777777776654
No 89
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.00 E-value=74 Score=32.83 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=13.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 010298 462 EKEVAGLKESVAKTKARLSDLELESNR 488 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ess~ 488 (513)
.++++++++++.++.+.|.+++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555443
No 90
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=49.79 E-value=1.5e+02 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhhhhHH
Q 010298 451 LESQMNELALKEKE-VAGLKESVAKTKARLSDLELESNRLE 490 (513)
Q Consensus 451 LEe~leeL~qKeke-v~d~~erv~e~k~RL~~LE~ess~L~ 490 (513)
|.++|++.-+-+++ +.+.+.++.+.+..|.++..-..+|.
T Consensus 101 L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 101 LARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333332 22334444455555554444444433
No 91
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=49.43 E-value=1.3e+02 Score=30.99 Aligned_cols=46 Identities=15% Similarity=-0.024 Sum_probs=24.0
Q ss_pred EEeccEEeecchHHHHHHHHhHccccc---ccCcccchhHHHHHHHHHHHHH
Q 010298 329 VSVGKYHVRASISSILQSIISRYGDIA---ANCNLESNSMRAYYLECLCSVV 377 (513)
Q Consensus 329 V~VnGFqVl~Sqv~iV~~IFeKHPDIA---snf~lKs~~lRs~YMn~Ll~LI 377 (513)
+.|||=.|. ...++.++....+|. .++.+-++..|..||+.+++..
T Consensus 129 ~~ing~~v~---~~~l~~~~~~li~i~~q~~~~~l~~~~~rr~~LD~~~~~~ 177 (517)
T 4ad8_A 129 ARLSGEVVS---VRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKE 177 (517)
T ss_dssp EESSSSBCC---HHHHHHHHTTTEEEESGGGGGTTTSHHHHHHHHHTSSHHH
T ss_pred EEECCEECC---HHHHHHHhhhheEEeCCchHHhcCCHHHHHHHHHHHhCcc
Confidence 677775543 223444444432321 1233347777777777666544
No 92
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=49.34 E-value=1.6e+02 Score=30.37 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHH
Q 010298 391 AKVKEMMAVLKDVESAQIDVDWLRNILNEISEA 423 (513)
Q Consensus 391 ~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ea 423 (513)
.+|.++...+..|.. -|+|+=|+.+++|+...
T Consensus 9 ~~~~~~~~~~~~~~~-~~~l~~~~~r~~el~~~ 40 (365)
T 1gqe_A 9 NRIQDLTERSDVLRG-YLDYDAKKERLEEVNAE 40 (365)
T ss_dssp HHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Confidence 344444444444443 37777788888887653
No 93
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=49.27 E-value=59 Score=26.01 Aligned_cols=15 Identities=0% Similarity=0.288 Sum_probs=11.4
Q ss_pred HHHHhHHHhcCcchh
Q 010298 397 MAVLKDVESAQIDVD 411 (513)
Q Consensus 397 ~~~L~dLe~aGfKVD 411 (513)
...+..|+.+||-|+
T Consensus 6 L~~I~~lr~lGfsL~ 20 (99)
T 1q08_A 6 LKFIRHARQLGFSLE 20 (99)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHCCCCHH
Confidence 456778888899865
No 94
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=49.08 E-value=80 Score=26.66 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 010298 451 LESQMNELALKEKEVAGLKESVAKT 475 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~ 475 (513)
|+...++|...++++...+.+|.++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444344444433
No 95
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.53 E-value=1.6e+02 Score=31.30 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=10.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhh
Q 010298 464 EVAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~es 486 (513)
+++++++++.++.+.|.+++.+.
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 96
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.15 E-value=81 Score=23.61 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 010298 448 KKELESQMNELA 459 (513)
Q Consensus 448 kkELEe~leeL~ 459 (513)
+..+....++|.
T Consensus 32 k~~~~~~~~~l~ 43 (60)
T 3htk_A 32 KEKINEIFEKLN 43 (60)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 97
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=47.03 E-value=56 Score=28.11 Aligned_cols=64 Identities=8% Similarity=0.116 Sum_probs=43.0
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhc--Ccc
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA--QID 409 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~a--GfK 409 (513)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=.. ||+
T Consensus 34 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H~~~~~V~ 106 (148)
T 1yhu_C 34 EEVFAALFKMVPAAKNLFTRVNVADINSPEFQGHVVRVMGGLDILINALDDIP-------TLESMLDHLAGQHAVRDGVT 106 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTGGGTTSHHHHHHHHHHHHHHHHHHHGGGCHH-------HHHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHChhHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHccccCCC
Confidence 57899999999999888764 3666654 67788888887775533 455555555554333 554
Q ss_pred hh
Q 010298 410 VD 411 (513)
Q Consensus 410 VD 411 (513)
-+
T Consensus 107 p~ 108 (148)
T 1yhu_C 107 GA 108 (148)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.65 E-value=1.1e+02 Score=39.91 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 445 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
..+.+++++..++|.+++++++++.+++.+.++.+.++-.+-.+|+..+...+.|++
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444433
No 99
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=46.29 E-value=28 Score=30.13 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=34.8
Q ss_pred hHHHHHHHHhHcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 340 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 340 qv~iV~~IFeKHPDIAsnf~l----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
-..+..++|+.||++-.-|.- .|+.++. .+|+.|..+|..|..
T Consensus 36 g~~~y~rlf~~~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 91 (159)
T 1hlm_A 36 VADVFIRIFHNDPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMDT 91 (159)
T ss_dssp HHHHHHHHTTTCSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357899999999999988865 5677776 788888888887755
No 100
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=45.68 E-value=1.4e+02 Score=25.20 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=15.1
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 431 QTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 431 ~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
++++.++++.....+.+..++...-....+++.++..
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~s 48 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQ 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444544444444444433333333333333333
No 101
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=45.51 E-value=44 Score=28.78 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=33.4
Q ss_pred HHHHHHHHhHcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l--------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~ 88 (150)
T 1sct_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDP 88 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 57889999999999888863 5666664 6888888888877653
No 102
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.51 E-value=1.1e+02 Score=24.03 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHH-------HHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 444 LESTKKELESQMNELALKEKEVAG--LKESVAKT-------KARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 444 ~e~~kkELEe~leeL~qKekev~d--~~erv~e~-------k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
+.....+|..++++++++-.+-.+ ++.+++++ .+-|...+++.++|..+|..|...++-..|
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.47 E-value=1.2e+02 Score=24.44 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLS 480 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~ 480 (513)
..+|......+.+.+.++....+++.+.-..|.
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444433
No 104
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.25 E-value=2e+02 Score=30.01 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=4.7
Q ss_pred HHHHHHHHHhHH
Q 010298 392 KVKEMMAVLKDV 403 (513)
Q Consensus 392 dL~ea~~~L~dL 403 (513)
+|.++...|.+|
T Consensus 39 ~l~~LE~~l~el 50 (409)
T 1m1j_C 39 ELLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 105
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=45.00 E-value=48 Score=28.53 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=32.8
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ldd~ 91 (149)
T 2lhb_A 35 VDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDT 91 (149)
T ss_dssp HHHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 47889999999999888852 4666764 5788888888777543
No 106
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=44.55 E-value=1.5e+02 Score=25.45 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 443 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 443 ~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
.++.++++|+....+|......+.....--..|..+|..++.+...|
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444444433333333233334455555555444443
No 107
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.20 E-value=98 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010298 447 TKKELESQMNELALKEKEVAGLKESVAKT 475 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~erv~e~ 475 (513)
.+.++++....|.+..+.+..+++.|..+
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 108
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=43.95 E-value=49 Score=28.44 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHhHcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhc--Ccc
Q 010298 341 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA--QID 409 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~------lKs~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~a--GfK 409 (513)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=.. ||+
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H~~~~gV~ 105 (147)
T 2zs0_C 33 QAVFASLFSRDAAAQGLFSGVSADNPDSADFRAHCVRVVNGLDVAINMLNDPA-------VLNEQLAHLSAQHQARAGVA 105 (147)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHCHHHHHhccccCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHhccccCCC
Confidence 5789999999999988774 33677776 46777777777775432 455555555544432 454
Q ss_pred hh
Q 010298 410 VD 411 (513)
Q Consensus 410 VD 411 (513)
-+
T Consensus 106 p~ 107 (147)
T 2zs0_C 106 AA 107 (147)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 109
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=43.65 E-value=71 Score=28.11 Aligned_cols=28 Identities=4% Similarity=0.127 Sum_probs=19.6
Q ss_pred hhccHHHHHHHHHHHhHHHhcCcchhhhh
Q 010298 386 MQMTKAKVKEMMAVLKDVESAQIDVDWLR 414 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe~aGfKVDWLe 414 (513)
+..+.+||..+.. +..|.+.||-|+=.+
T Consensus 53 R~Y~~~dl~~l~~-I~~lr~~G~sL~eIk 80 (148)
T 3gpv_A 53 RIFNEEALKYLEM-ILCLKNTGMPIQKIK 80 (148)
T ss_dssp EEBCHHHHHHHHH-HHHHHTTTCCHHHHH
T ss_pred eecCHHHHHHHHH-HHHHHHcCCCHHHHH
Confidence 5678888886554 566788999765333
No 110
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.39 E-value=73 Score=24.82 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 461 KEKEVAGLKESVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 461 Kekev~d~~erv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
.+.++.++..+-.+++.++..|+.+..-|.+.|.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445666777778888887777766543
No 111
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=43.33 E-value=51 Score=28.22 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=32.4
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lR---s~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.|+ ...|+.|..+|..|...
T Consensus 31 ~~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~ 82 (145)
T 1x9f_B 31 QAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQP 82 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 56899999999999887763 355565 46788888888877543
No 112
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.00 E-value=1.6e+02 Score=30.83 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010298 448 KKELESQ 454 (513)
Q Consensus 448 kkELEe~ 454 (513)
-.+||.+
T Consensus 115 s~eLe~~ 121 (390)
T 1deq_A 115 NEDLRSR 121 (390)
T ss_pred HHHHHHH
Confidence 3333333
No 113
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.49 E-value=32 Score=31.25 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010298 441 VNLLESTKKELESQMNELA 459 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~ 459 (513)
+...+..+..|+.+|++|.
T Consensus 62 R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555553
No 114
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=42.19 E-value=62 Score=27.88 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=32.9
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lR---s~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.++ ...|+.|..+|..|...
T Consensus 33 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 84 (149)
T 1yhu_D 33 QAVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDP 84 (149)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTSSSTTSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 57899999999999887753 366677 46678888888877643
No 115
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=42.18 E-value=1.6e+02 Score=24.93 Aligned_cols=69 Identities=6% Similarity=0.050 Sum_probs=44.1
Q ss_pred HHHHHHHHhHcccccccCcc---------cchhHHH---HHHHHHHHHHHHHhcchhhhc--cHHHHHHHHHHHhHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL---------ESNSMRA---YYLECLCSVVQELQSTSLMQM--TKAKVKEMMAVLKDVESA 406 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l---------Ks~~lRs---~YMn~Ll~LIetL~kspl~eL--S~~dL~ea~~~L~dLe~a 406 (513)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|....+..| .-.+|...+.. -
T Consensus 27 ~~fy~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~~~l~~~l~~L~~~H~~------~ 100 (153)
T 1gdj_A 27 HRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLEVTGVVVTDATLKNLGSVHVS------K 100 (153)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHH------H
T ss_pred HHHHHHHHHHCHhHHHhhhhccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhh------c
Confidence 57889999999999987763 3667754 478888888888865331122 22344444443 2
Q ss_pred Ccchhhhhh
Q 010298 407 QIDVDWLRN 415 (513)
Q Consensus 407 GfKVDWLek 415 (513)
|++-++..-
T Consensus 101 gV~p~~f~~ 109 (153)
T 1gdj_A 101 GVADAHFPV 109 (153)
T ss_dssp TCCGGGHHH
T ss_pred CCCHHHHHH
Confidence 666665554
No 116
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=41.94 E-value=62 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHHHhHcccccccCccc---------chhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNLE---------SNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lK---------s~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.+. |+.++. ..|..|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l~ 77 (153)
T 2bk9_A 25 AAILTQFFNRFPSNLEKFPFRDVPLEELSGNARFRAHAGRIIRVFDESIQVLG 77 (153)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhChhHHhcCcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcc
Confidence 467999999999999888753 556663 56777777777763
No 117
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=41.65 E-value=1.7e+02 Score=25.11 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=32.8
Q ss_pred HHHHHHHHhHcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 23 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 77 (147)
T 2nrl_A 23 GLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGS 77 (147)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTCCGGGTTTCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHCHhHHHHhhhhcCCCHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999998887753 6777765 577888888877654
No 118
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=41.57 E-value=51 Score=27.95 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=33.3
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.++. ..|..|..+|..|...
T Consensus 31 ~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~ 82 (144)
T 1yhu_B 31 HFIWSHVFQHSPAARDMFKRVRGDNIHTPAFRAHATRVLGGLDMCIALLDDE 82 (144)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCSSSHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHChHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 57889999999998877764 3566665 6888888888887653
No 119
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=41.52 E-value=1.5e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.416 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
..||.-+++.|....+-+-+ ||+.||+.-+.|+..+..+..+++
T Consensus 23 I~EID~Ki~nL~~mR~ivld----------RlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 23 IRDIEVEVENLRQKKEKLLG----------KIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455556677766666555 889999999999998888887765
No 120
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=41.40 E-value=54 Score=30.82 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhhcC
Q 010298 475 TKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 513 (513)
Q Consensus 475 ~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~kSl~D~lL 513 (513)
+++++-++..+...+.++..-=+....+|...+|+-+||
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LL 96 (197)
T 1dkg_A 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELL 96 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888877888888888888887765
No 121
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=40.63 E-value=2.2e+02 Score=26.14 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 010298 451 LESQMNELALKEKE 464 (513)
Q Consensus 451 LEe~leeL~qKeke 464 (513)
.+++++.|..+.++
T Consensus 75 yEeqIk~L~~kLKE 88 (155)
T 2efr_A 75 YEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 122
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=40.49 E-value=36 Score=29.63 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHHHHHHHhHcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~-l---------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..++.++|+.||++-.-|. + .|+.|+. ..|..|..+|..|...
T Consensus 18 ~~~l~rlF~~~P~tk~~F~~f~~~s~~~l~~n~~~~aHg~kV~~al~~~v~~ldd~ 73 (137)
T 3lb2_A 18 QDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDC 73 (137)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTCCCC-CTTSHHHHHHHHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHCHHHHHHhHHcCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4689999999999988876 2 3577776 5677777777777553
No 123
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=40.47 E-value=1.7e+02 Score=28.84 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 477 ARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 477 ~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
+||+.||+..+.|+..|..++.+++
T Consensus 198 ~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 198 GKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3666666666666666666666554
No 124
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.47 E-value=2.4e+02 Score=30.35 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=27.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010298 411 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG 467 (513)
Q Consensus 411 DWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d 467 (513)
+-|+.++..+...--.+.++.. .+++.++-+++.+..++..|..++.-+.+
T Consensus 93 ~~lk~~~~q~~dndn~~~e~S~------eLe~ri~yIK~kVd~qi~~IrvLq~~l~~ 143 (491)
T 1m1j_A 93 NILKPGLEGAQQLDENYGHVST------ELRRRIVTLKQRVATQVNRIKALQNSIQE 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777766655544443332 34455555555555555555555554444
No 125
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=40.14 E-value=53 Score=28.54 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 405 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~ 405 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.... .|..+...|...=.
T Consensus 36 ~~~~~rlF~~~P~~k~~F~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~-------~l~~~l~~L~~~H~ 102 (151)
T 1x9f_A 36 RAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTL-------VLQSHLGHLADQHI 102 (151)
T ss_dssp HHHHHHHHHHCGGGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHhc
Confidence 47899999999999887753 3777764 56777777777665432 45555555554443
No 126
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=40.02 E-value=1.8e+02 Score=26.36 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
-++.+.+-+.+|.++..+..++.+.-..+++.|...
T Consensus 112 ~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 112 QKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455777778888888888887777555566555443
No 127
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=39.96 E-value=37 Score=29.26 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHHHHhHcccccccCcc--------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL--------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l--------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 36 ~~~y~rlF~~~P~~k~~F~~f~~~~~~~~n~~~~~h~~~v~~al~~~v~~ld~ 88 (151)
T 1sct_B 36 LMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDD 88 (151)
T ss_dssp HHHHHHHHHHCHHHHHHTGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47889999999998887762 5666654 677777777776654
No 128
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=39.86 E-value=63 Score=27.55 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHH---HHHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMR---AYYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lR---s~YMn~Ll~LIetL~ks 383 (513)
..++.++|+.||++-.-|.- .|+.|+ ...|..|..+|..|...
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~ 80 (142)
T 2zs0_B 29 NRIWEDLFANMPDARGLFSRVNGNDIDSSEFQAHSLRVLGGLDMCVASLDDV 80 (142)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 57899999999999887753 355555 45677777777777543
No 129
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=39.49 E-value=2e+02 Score=25.46 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc-ccchh
Q 010298 474 KTKARLSDLELESNRLEQIIQATQSKVTKFS-QKSLA 509 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~-~kSl~ 509 (513)
++.+-+..++.....|...|..-..+|+.|. -++|-
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888988999999994 34443
No 130
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=39.32 E-value=50 Score=28.71 Aligned_cols=42 Identities=7% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHhHcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..++.++|..||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 83 (147)
T 1h97_A 29 LGAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISN 83 (147)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCC
Confidence 58899999999999887762 3777764 466666666666543
No 131
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.19 E-value=2.3e+02 Score=26.05 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=12.7
Q ss_pred HHHHHhhhhHHHHHHHhhhhhhh
Q 010298 480 SDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 480 ~~LE~ess~L~k~v~~~kSKV~k 502 (513)
..+|.....|...+.+....++-
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665555543
No 132
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=39.17 E-value=64 Score=28.02 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=31.9
Q ss_pred HHHHHHHHhHcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..++.++|..||++-.-|.- .|+.|+. ..|+.|..+|..|..
T Consensus 30 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 84 (148)
T 2vyw_A 30 VSIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLKAASN 84 (148)
T ss_dssp HHHHHHHHHHCGGGGGGSGGGTTCCTTTGGGCSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999887752 4555554 578888888876654
No 133
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=39.16 E-value=1.7e+02 Score=24.58 Aligned_cols=44 Identities=2% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHhHcccccccCcccchhH---HHHHHHHHHHHHHHHhcch
Q 010298 341 SSILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQSTS 384 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lKs~~l---Rs~YMn~Ll~LIetL~ksp 384 (513)
..+..++|+.||++..-|.--|+.+ ....+..|..+|..|....
T Consensus 26 ~~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~v~~ld~~~ 72 (146)
T 2vhb_A 26 TTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLP 72 (146)
T ss_dssp HHHHHHHHHHCGGGGGGC--------CCCCCHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHChHHHHhcCcchhhhhHHHHHHHHHHHHHHHhccChH
Confidence 3677889999999999887644433 2467788888888776543
No 134
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=38.82 E-value=88 Score=24.95 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 010298 417 LNEISEAI 424 (513)
Q Consensus 417 LeEV~Ear 424 (513)
|+||.+..
T Consensus 19 L~eIk~~l 26 (99)
T 1q08_A 19 LESIRELL 26 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 135
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=38.63 E-value=1.1e+02 Score=25.36 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 458 LALKEKEVAGLKESVA-KTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 458 L~qKekev~d~~erv~-e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
+..--..+.++=.++. .|+.||..|+.+...|+..|..+..||..
T Consensus 25 in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 25 ITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445566555666 58999999999999999999999999865
No 136
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.54 E-value=45 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 470 ESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 470 erv~e~k~RL~~LE~ess~L~k~v 493 (513)
.+|++...+...|+.+..+|...+
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455556666666666666665544
No 137
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=38.07 E-value=20 Score=31.11 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.7
Q ss_pred hHHHHHHHHhHcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 340 ISSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 340 qv~iV~~IFeKHPDIAsnf~l----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
-..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 36 g~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~ 91 (158)
T 1hlb_A 36 VTDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDS 91 (158)
T ss_dssp HHHHHHHHHHHCTHHHHTSGGGTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHCHHHHHHhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCc
Confidence 457899999999999888865 6777776 677777777776654
No 138
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=37.85 E-value=1.1e+02 Score=29.14 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=5.7
Q ss_pred hHHHHHHHhhhhh
Q 010298 488 RLEQIIQATQSKV 500 (513)
Q Consensus 488 ~L~k~v~~~kSKV 500 (513)
+|...+..++.|+
T Consensus 195 kl~~~~e~lr~~l 207 (243)
T 2a01_A 195 KATEHLSTLSEKA 207 (243)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 139
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.84 E-value=3.6e+02 Score=28.73 Aligned_cols=14 Identities=0% Similarity=-0.192 Sum_probs=0.0
Q ss_pred CCCCCCCccccccc
Q 010298 270 KNGKDNKVQAPIEI 283 (513)
Q Consensus 270 ~~~~~~~s~~~~p~ 283 (513)
-.|--++-+++.|.
T Consensus 41 ~~~~~~~~~~~~~~ 54 (464)
T 1m1j_B 41 SGTGYQPRPPKQDK 54 (464)
T ss_dssp --------------
T ss_pred CCCCcCCCCCCCcc
Confidence 35555555555553
No 140
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.63 E-value=31 Score=26.44 Aligned_cols=11 Identities=45% Similarity=0.501 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 010298 470 ESVAKTKARLS 480 (513)
Q Consensus 470 erv~e~k~RL~ 480 (513)
+++.+.+.||.
T Consensus 40 ~~~~el~~~l~ 50 (53)
T 2yy0_A 40 EENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 34455555554
No 141
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=37.19 E-value=42 Score=31.23 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHhhhhhh
Q 010298 484 LESNRLEQIIQATQSKVT 501 (513)
Q Consensus 484 ~ess~L~k~v~~~kSKV~ 501 (513)
...++|.+.+..++.++.
T Consensus 165 elk~~l~~~veel~~~L~ 182 (191)
T 1nfn_A 165 GAREGAERGLSAIRERLG 182 (191)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 334444445555555443
No 142
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=36.77 E-value=2.1e+02 Score=25.97 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=40.3
Q ss_pred hHHHHHHHHhHcccccccCcccchhHHHHHH----------HHHHHHHHHHhcc--hhhhccHHHHHHHHHHHhHHHhcC
Q 010298 340 ISSILQSIISRYGDIAANCNLESNSMRAYYL----------ECLCSVVQELQST--SLMQMTKAKVKEMMAVLKDVESAQ 407 (513)
Q Consensus 340 qv~iV~~IFeKHPDIAsnf~lKs~~lRs~YM----------n~Ll~LIetL~ks--pl~eLS~~dL~ea~~~L~dLe~aG 407 (513)
-...|+..+.||-.+-.....-.+.+..... ..|-.-++.|+.. .|.+++............++.++-
T Consensus 51 Dl~~v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le~l~~F~~~~~ 130 (224)
T 2iak_A 51 DLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRAT 130 (224)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888777666554444433221 1111111111110 123444443333334444444444
Q ss_pred cchhhhhhHHHHH
Q 010298 408 IDVDWLRNILNEI 420 (513)
Q Consensus 408 fKVDWLekKLeEV 420 (513)
--..||..+...+
T Consensus 131 ~~~~Wi~eke~~~ 143 (224)
T 2iak_A 131 NELIWLNEKEESE 143 (224)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5579998888754
No 143
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=36.67 E-value=67 Score=27.62 Aligned_cols=42 Identities=10% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHHHhHcccccccCc-c-------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCN-L-------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~-l-------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|. + .|+.++. ..|..|..+|..|..
T Consensus 34 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd 86 (146)
T 3g46_A 34 VALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDN 86 (146)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999999987776 3 4566655 577888888887744
No 144
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=36.06 E-value=94 Score=29.04 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=35.5
Q ss_pred HHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 010298 374 CSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 374 l~LIetL~kspl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear 424 (513)
|.||+.|..--...+|-++|.-|+ .... .+.-++||++.|-.+.+.+
T Consensus 15 l~lV~liREaEk~GfspEEV~aAl-~~~g---~~~P~~WLk~ewp~ll~~V 61 (162)
T 4dbg_B 15 LQLVSMIREGEAAGACPEEIFSAL-QYSG---TEVPLQWLRSELPYVLEMV 61 (162)
T ss_dssp HHHHHTTSTTCCSCCCHHHHHHHH-HHHT---CCCCHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HhcC---CCCcHHHHHHHHHHHHHHH
Confidence 567777777777889999988777 3332 6789999999887665544
No 145
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=36.02 E-value=1.9e+02 Score=24.05 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHHHHHhHcccccccCcc---cchhHHHHHHHHHHHHHHHHhcch
Q 010298 342 SILQSIISRYGDIAANCNL---ESNSMRAYYLECLCSVVQELQSTS 384 (513)
Q Consensus 342 ~iV~~IFeKHPDIAsnf~l---Ks~~lRs~YMn~Ll~LIetL~ksp 384 (513)
.+..++|+.||++..-|.- +...-....|+.|..+|.-|....
T Consensus 26 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~~~~~l~~~v~~ld~~~ 71 (140)
T 2wy4_A 26 EFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLE 71 (140)
T ss_dssp HHHHHHHHHCGGGGGGSCHHHHHTSHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHChHHHHhcCcCcccHHHHHHHHHHHHHHHHHhccCHH
Confidence 5677999999999998852 223345688888888888876644
No 146
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=35.72 E-value=47 Score=28.20 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|.- .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (142)
T 1b0b_A 26 PEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDN 81 (142)
T ss_dssp HHHHHHHHHHCHHHHHTTTTTTTTCCGGGCTTSHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhCchHHHHhHHhhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCC
Confidence 47889999999999887765 3555654 567777777776644
No 147
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=35.65 E-value=2.2e+02 Score=24.79 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=13.6
Q ss_pred chHHHHHHHHhHcccccccC
Q 010298 339 SISSILQSIISRYGDIAANC 358 (513)
Q Consensus 339 Sqv~iV~~IFeKHPDIAsnf 358 (513)
.-+..|+.++.+|-.+-.++
T Consensus 30 ~dl~~v~~ll~kh~~~~~ei 49 (213)
T 1cun_A 30 RDLTGVQNLRKKHKRLEAEL 49 (213)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 45677788888887765443
No 148
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=35.44 E-value=1.9e+02 Score=24.03 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=10.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHH
Q 010298 431 QTIDAAKANCVNLLESTKKELE 452 (513)
Q Consensus 431 ~~le~eKd~~e~~~e~~kkELE 452 (513)
++++.++++.....+.+..++.
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k 33 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKK 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444444433
No 149
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=34.97 E-value=1.4e+02 Score=24.66 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=28.6
Q ss_pred HHhhhHHHHH-HHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 464 EVAGLKESVA-KTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 464 ev~d~~erv~-e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
.+.++=.++. -|+.||..|+.+...|+..+..+..||.
T Consensus 31 ~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 31 KIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555 5888888888888888888888888874
No 150
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.95 E-value=1.5e+02 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 010298 469 KESVAKTKARLSDLELESNRLEQIIQATQSKV 500 (513)
Q Consensus 469 ~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV 500 (513)
|..+.+-..+|..||.+-++++..+.-+++|+
T Consensus 23 rrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 23 RQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
Confidence 33444567788888888888888887777663
No 151
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=34.86 E-value=88 Score=27.14 Aligned_cols=42 Identities=5% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHhHcccccccCcc----------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL----------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l----------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..++.++|+.||++-.-|.- .|+.++. ..|..|..+|..|..
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~ah~~~v~~~l~~~v~~ldd 83 (152)
T 1x3k_A 29 NTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVGN 83 (152)
T ss_dssp HHHHHHHHHHSGGGGGGSTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47889999999999888862 3666665 455566666666643
No 152
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.68 E-value=1.5e+02 Score=25.49 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 439 ~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L 489 (513)
.+...+.....+|+.+++.|..+-..+..+..+..-++.+-..|+.+..+-
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445556666777777666666655555555555555555555555444443
No 153
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.54 E-value=65 Score=33.10 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKT 475 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~ 475 (513)
++.++.++.++++..+.|...+..-+.+-.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 23 KEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444433333333333333333333333
No 154
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=34.51 E-value=45 Score=28.34 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=30.6
Q ss_pred HHHHHHHHhHcccccccCc----------ccchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~----------lKs~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.=|. ..|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 80 (141)
T 1ith_A 27 DSIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALG 80 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHhHhhcCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHcc
Confidence 5688999999999988776 33676664 56677777777664
No 155
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=34.50 E-value=2.9e+02 Score=25.73 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=21.3
Q ss_pred hhccHHHHHHHHHHH--hHHHhcCcchhhhhhHHHHHHHH
Q 010298 386 MQMTKAKVKEMMAVL--KDVESAQIDVDWLRNILNEISEA 423 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L--~dLe~aGfKVDWLekKLeEV~Ea 423 (513)
..|-.++|..=++++ ..+..+.=.+++|+.+|.-+.+.
T Consensus 30 ~~l~~sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e 69 (216)
T 2lem_A 30 SQFESSSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRD 69 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555555554433333 34555555678888888765443
No 156
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=34.45 E-value=73 Score=27.47 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHHHhHcccccccCc-c---------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCN-L---------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~-l---------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|. + .|+.+|. ..|..|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld 78 (151)
T 2c0k_A 25 VEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEGVKALS 78 (151)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCHHHHHHHHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788999999999987775 2 4555554 57888888888776
No 157
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=34.23 E-value=1.9e+02 Score=25.39 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHHHHhHcccccccCcccc-----hhHHH---HHHHHHHHHHHHHhcch
Q 010298 341 SSILQSIISRYGDIAANCNLES-----NSMRA---YYLECLCSVVQELQSTS 384 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lKs-----~~lRs---~YMn~Ll~LIetL~ksp 384 (513)
..+..++|+.||++-.=|.... +.||. ..|++|-.+|..|....
T Consensus 28 ~~~f~rLF~~~P~~k~lF~~~~~~~~~~~~~~Ha~rv~~~l~~~V~~Ldd~~ 79 (161)
T 3mvc_A 28 ISIFRNSFFKNPEIRQMIMFGTKNEGHERLKKHAQLFTVLMDDLIANLDSPS 79 (161)
T ss_dssp HHHHHHHHHHCHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhChhHHHHhccCcccCCcHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 5789999999999877765422 22332 57788888888776543
No 158
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=33.83 E-value=1.6e+02 Score=28.30 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=9.1
Q ss_pred hhhhhhhccccchhhhc
Q 010298 496 TQSKVTKFSQKSLADEI 512 (513)
Q Consensus 496 ~kSKV~kF~~kSl~D~l 512 (513)
++..+.+..-.+.+||.
T Consensus 148 a~~~l~~~~i~AP~~G~ 164 (369)
T 4dk0_A 148 AETNLGYTKITSPIDGT 164 (369)
T ss_dssp HHHTTCCSSCCCSCCSC
T ss_pred HHHHhhcCEEECCCCeE
Confidence 44444555556666654
No 159
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=33.80 E-value=86 Score=26.55 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=32.4
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|.- .|+.|+. ..|+.|..+|..|...
T Consensus 29 ~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~~ 80 (140)
T 1x9f_D 29 LELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTP 80 (140)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 56889999999999887753 3556664 5788888888877543
No 160
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=33.63 E-value=18 Score=29.59 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=26.2
Q ss_pred ccceEEeccEEeecchHHHHHHHHhHcccccccCcc
Q 010298 325 ISDSVSVGKYHVRASISSILQSIISRYGDIAANCNL 360 (513)
Q Consensus 325 vsEtV~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf~l 360 (513)
..++|.|+|+.|.|++++. ++..||.++..+.+
T Consensus 3 ~~D~Iiv~G~nv~P~eIE~---~l~~~p~v~~~~~v 35 (109)
T 3gxs_A 3 ADDMIILKGVNIFPIQIET---ILLQFKELGSDYLI 35 (109)
T ss_dssp GGSCEEETTEEECHHHHHH---HHHTCTTEEEEEEE
T ss_pred ccCEEEECCEEECHHHHHH---HHHhCCCcCCcEEE
Confidence 4578999999999999765 46679999866543
No 161
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=33.45 E-value=3.2e+02 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHH-HHHhhhhHHHHHHHhhh
Q 010298 469 KESVAKTKARLSD-LELESNRLEQIIQATQS 498 (513)
Q Consensus 469 ~erv~e~k~RL~~-LE~ess~L~k~v~~~kS 498 (513)
..++.+++++|.- .+....+|.+.+..++.
T Consensus 153 ~~~veelk~~l~P~~ee~r~kl~~~~~el~~ 183 (243)
T 2a01_A 153 RAHVDALRTHLAPYSDELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344455555542 23444445555555555
No 162
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=33.45 E-value=1.8e+02 Score=23.07 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=18.4
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 010298 393 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 393 L~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear 424 (513)
|.++...|......|-.++=++..|.+.....
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~ 49 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFM 49 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 34445555555666777666666666554443
No 163
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=33.38 E-value=74 Score=27.37 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=31.0
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..++.++|+.||++-.-|.- .|+.|+. ..|+.|..+|..|...
T Consensus 29 ~~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~ 80 (145)
T 1yhu_A 29 DALWRNVFNYAPNARDIFESVNSKDMASPEFKAHIARVLGGLDRVISMLDNQ 80 (145)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHcCHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 47899999999998776642 3566654 5677777777766543
No 164
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=32.89 E-value=87 Score=26.77 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=33.5
Q ss_pred HHHHHHHHhHcccccccCcc----c------chhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL----E------SNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l----K------s~~lRs---~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|.- . |+.++. ..|+.|..+|..|..
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~ 81 (150)
T 1x46_A 27 VDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPFALHATRIVSVINEAIALMGV 81 (150)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCHHHHHhhHhccCCCHHHHhhChHHHHHHHHHHHHHHHHHHHccC
Confidence 88999999999999988862 1 555654 678888888888866
No 165
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=32.81 E-value=69 Score=27.70 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHHHHHHhHcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh
Q 010298 341 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 405 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~------lKs~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~ 405 (513)
..+..++|+.||++-.-|. ..|+.++. ..|+.|..+|..|.... .|..+...|...=.
T Consensus 37 ~~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~-------~l~~~l~~L~~~H~ 103 (153)
T 1x9f_C 37 RLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPP-------ALDAALDHLAHQHE 103 (153)
T ss_dssp HHHHHHHHHHSTTHHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHhhhhcCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhhc
Confidence 5789999999999887664 34666663 45777777777765433 35555555554443
No 166
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=32.67 E-value=88 Score=26.55 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHHhHcccccccCc-----ccchhHH---HHHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCN-----LESNSMR---AYYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~-----lKs~~lR---s~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|. ..|+.|+ ...|+.|..+|.-|..
T Consensus 27 ~~~y~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~ 76 (142)
T 1jeb_A 27 TETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAVKSIDD 76 (142)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCccHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4788999999999988776 3456666 4678888888876644
No 167
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=32.39 E-value=1.7e+02 Score=26.20 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=31.5
Q ss_pred HHHHHHHHhHcccccccCc----------ccchhHHH---HHHHHHHHHHHHHhcch
Q 010298 341 SSILQSIISRYGDIAANCN----------LESNSMRA---YYLECLCSVVQELQSTS 384 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~----------lKs~~lRs---~YMn~Ll~LIetL~ksp 384 (513)
..+...+|+.|||+..=|. .+|+.|+. ..|+.|..+|..|....
T Consensus 28 ~~fy~~LF~~~Pe~r~~F~~~~~~~~~d~~~s~~f~~q~~rl~~aL~~~i~~lDd~~ 84 (150)
T 1ash_A 28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE 84 (150)
T ss_dssp HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHChhHHHHhhhcccCChhhhhcCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4678899999999999885 33675555 56666666676665444
No 168
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.24 E-value=1.7e+02 Score=26.24 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=8.8
Q ss_pred hccHHHHHHHHHHHhHH
Q 010298 387 QMTKAKVKEMMAVLKDV 403 (513)
Q Consensus 387 eLS~~dL~ea~~~L~dL 403 (513)
.|=+..|..|...|.+-
T Consensus 28 ~lLq~qLTqAQe~l~~~ 44 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDV 44 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555443
No 169
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=32.16 E-value=1e+02 Score=25.62 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=32.4
Q ss_pred HHHHHHHHhHcccccccCcccchhHHHHHHHHHHHHHHHHhcch
Q 010298 341 SSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTS 384 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lKs~~lRs~YMn~Ll~LIetL~ksp 384 (513)
..+..++|+.||++-.-|.-....=....|..|..+|..|....
T Consensus 25 ~~fy~rlf~~~P~~k~~F~~d~~~h~~~l~~al~~~v~~ld~~~ 68 (131)
T 3ubc_A 25 LLFYANLFKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLE 68 (131)
T ss_dssp HHHHHHHHHHCGGGGGGCCSCHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHhChHHHHHccccHHHHHHHHHHHHHHHHHhCCChH
Confidence 35688999999999888876433345567888888888775544
No 170
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.74 E-value=2.3e+02 Score=30.16 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhH
Q 010298 465 VAGLKESVAKTKARLSDLELESNRL 489 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~ess~L 489 (513)
++++++++.++.+.|.+++.+...+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777665543
No 171
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.67 E-value=2.1e+02 Score=23.29 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQK 506 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~k 506 (513)
....+.+=-..|.+++.+..+..-.|.....++.+|..+
T Consensus 48 ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 48 MGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666667778888888877777888888888877643
No 172
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=31.65 E-value=1.1e+02 Score=26.18 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHhHcccccccCc------ccchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~------lKs~~lRs---~YMn~Ll~LIetL~k 382 (513)
..++.++|+.||++-.=|. ..|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~ 76 (142)
T 3d1k_A 26 NDALSRMIVVYPQTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDD 76 (142)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3688999999999876664 34677766 577777777776643
No 173
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.39 E-value=2.1e+02 Score=23.16 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 470 ESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 470 erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
.++..+..++..|+.....+...+..++.++.
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555443
No 174
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.38 E-value=3.4e+02 Score=25.66 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhHHH
Q 010298 391 AKVKEMMAVLKDVE 404 (513)
Q Consensus 391 ~dL~ea~~~L~dLe 404 (513)
.+|..+...+++|.
T Consensus 49 ~eL~~~Ek~~~~L~ 62 (189)
T 2v71_A 49 AQLVQAEQRNRDLQ 62 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 175
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.31 E-value=2.6e+02 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 010298 388 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 388 LS~~dL~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear 424 (513)
+|+..|.+=-++|.|- ||-|+.+|+|.-|..
T Consensus 16 VsnAQLDNEKsal~Yq------VdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQ------VDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3455666666666664 599999999888776
No 176
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=31.20 E-value=49 Score=27.66 Aligned_cols=72 Identities=7% Similarity=0.092 Sum_probs=45.3
Q ss_pred HHHHHHHHhHcccccccCcc-------cchhHH---HHHHHHHHHHHHHHhcchhhhc-cHHHHHHHHHHHhHHHhcCcc
Q 010298 341 SSILQSIISRYGDIAANCNL-------ESNSMR---AYYLECLCSVVQELQSTSLMQM-TKAKVKEMMAVLKDVESAQID 409 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-------Ks~~lR---s~YMn~Ll~LIetL~kspl~eL-S~~dL~ea~~~L~dLe~aGfK 409 (513)
..+..++|+.||++..-|.- .|+.++ ...|..|..+|..|.... .+ ....|...+.. .|+.
T Consensus 27 ~~fy~rlf~~~P~~~~~F~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~~~~~~~l~~~H~~------~gv~ 98 (143)
T 1bin_A 27 VVFYTSILEKAPAAKDLFSFLANGVDPTNPKLTGHAEKLFALVRDSAGQLKASG--TVVADAALGSVHAQ------KAVT 98 (143)
T ss_dssp HHHHHHHHHHCTTHHHHSGGGTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHS--CCCCCHHHHHHHTT------TTCC
T ss_pred HHHHHHHHHHChHHHHHhHhcccCccccCHHHHHHHHHHHHHHHHHHHHCCChH--HHHHHHHHHHHHHh------cCCC
Confidence 35677999999999987765 577774 457888888888887644 12 11125544442 3666
Q ss_pred hhhhhhHHHHH
Q 010298 410 VDWLRNILNEI 420 (513)
Q Consensus 410 VDWLekKLeEV 420 (513)
-+|..--.+-+
T Consensus 99 p~~f~~~~~~L 109 (143)
T 1bin_A 99 DPQFVVVKEAL 109 (143)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66654433333
No 177
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.10 E-value=1.3e+02 Score=31.94 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=9.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHhh
Q 010298 465 VAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~es 486 (513)
++++++++.++.+.|.+++.+.
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 178
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=30.88 E-value=54 Score=28.48 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELE 485 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~e 485 (513)
|..+++.|++..+.+..+..+|.+++.+|.++...
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555656566666666666665543
No 179
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=30.84 E-value=35 Score=29.64 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHhHcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~----l-------Ks~~lRs---~YMn~Ll~LIetL~k 382 (513)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|..
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd 81 (153)
T 1lhs_A 26 QEVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNN 81 (153)
T ss_dssp HHHHHHHHHHCHHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 5788999999999888876 3 6777775 678888888877654
No 180
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.80 E-value=2.8e+02 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 010298 457 ELALKEKEVAGLKESVAKTKARL 479 (513)
Q Consensus 457 eL~qKekev~d~~erv~e~k~RL 479 (513)
||.....-|.+++.+|.+|+..|
T Consensus 106 Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 106 DLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666566666665544
No 181
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.65 E-value=4.2e+02 Score=26.52 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 447 TKKELESQMNELALKEKEVAGLK-----------ESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 447 ~kkELEe~leeL~qKekev~d~~-----------erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+.++|.+-.+.|.+.+++..-+. .++..-..|+.+||.+.++|++.|.++..-|++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666554332 2233334688999999999999998888877653
No 182
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=30.40 E-value=2.4e+02 Score=25.03 Aligned_cols=45 Identities=24% Similarity=0.241 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhhhhHHHHHH
Q 010298 450 ELESQMNELALKEKEVAGLKESVAKT-KARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 450 ELEe~leeL~qKekev~d~~erv~e~-k~RL~~LE~ess~L~k~v~ 494 (513)
.||.+++.|.++|.+.=..+..+.+. ..+|..+..+...|+.++.
T Consensus 13 ~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~ 58 (119)
T 3etw_A 13 ALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433322222222 4445544444444444443
No 183
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=30.28 E-value=60 Score=27.57 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHHHhHcccccccCc-----ccchhHHH---HHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~-----lKs~~lRs---~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|. ..|+.++. ..|..|..+|..|..
T Consensus 26 ~~~y~rlF~~~P~~~~~F~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld~ 75 (141)
T 2w72_C 26 AEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNAVAHVDD 75 (141)
T ss_dssp HHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHChhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4788999999999988776 34566654 777888888776643
No 184
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=29.94 E-value=2.7e+02 Score=23.94 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=32.4
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~ks 383 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|...
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~ 82 (151)
T 1a6m_A 26 QDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHH 82 (151)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHChhHHHHhHhhcCCCcHHHhcCCHHHHHHHHHHHHHHHHHHHccCCH
Confidence 57889999999998877742 4555665 5788888888877553
No 185
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.79 E-value=1.3e+02 Score=24.82 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=2.5
Q ss_pred HHHHhHH
Q 010298 397 MAVLKDV 403 (513)
Q Consensus 397 ~~~L~dL 403 (513)
..++..|
T Consensus 40 ~~~~~eL 46 (117)
T 2zqm_A 40 KKALDEI 46 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 186
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=29.47 E-value=3.8e+02 Score=25.66 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh-ccccchhh
Q 010298 467 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK-FSQKSLAD 510 (513)
Q Consensus 467 d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~k-F~~kSl~D 510 (513)
|-.-+++.+.-|+.+-+|-..=++.....+..|.++ ...++++|
T Consensus 156 Dy~v~~e~~~r~~eQ~~mv~wV~~~V~k~it~~~ek~~L~~cIad 200 (214)
T 2cly_A 156 DYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIAD 200 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 333455566666667677666666666666656443 34444443
No 187
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.17 E-value=2.5e+02 Score=23.51 Aligned_cols=9 Identities=22% Similarity=0.446 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 010298 476 KARLSDLEL 484 (513)
Q Consensus 476 k~RL~~LE~ 484 (513)
.+=|.+|++
T Consensus 62 ~eLl~qMel 70 (102)
T 2qyw_A 62 NETLAEMEE 70 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 188
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.48 E-value=89 Score=22.72 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 010298 448 KKELESQMNELALKEKEVAGLKESV 472 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv 472 (513)
+.++|+.+.+....+.||.-+++-+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3344444444444444444433333
No 189
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=28.33 E-value=1.8e+02 Score=24.25 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=5.0
Q ss_pred chhhhhhHHH
Q 010298 409 DVDWLRNILN 418 (513)
Q Consensus 409 KVDWLekKLe 418 (513)
.|+||+.-|+
T Consensus 25 ~le~Lee~le 34 (86)
T 3nr7_A 25 TLETLEEMLE 34 (86)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4556554443
No 190
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=28.26 E-value=1.1e+02 Score=26.06 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=39.0
Q ss_pred HHHHHHHHhHcccccccCc------ccchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh--cCcc
Q 010298 341 SSILQSIISRYGDIAANCN------LESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES--AQID 409 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~------lKs~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~--aGfK 409 (513)
..++.++|+.||++-.=|. ..|+.++. ..|+.|..+|..|.. |..+...|...=. -|++
T Consensus 27 ~~~~~rlF~~~P~~~~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~H~~~~~V~ 96 (143)
T 3bom_A 27 EQALSRMLVVYPQTKAYFSHWASVAPGSAPVKKHGITIMNQIDDCVGHMDD----------LFGFLTKLSELHATKLRVD 96 (143)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSSCCSTTCHHHHHHHHHHHHHHHHHHTTTTC----------HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHHHHHhCCC
Confidence 3688999999999877664 34677775 467777777665533 5555555555433 3444
Q ss_pred hh
Q 010298 410 VD 411 (513)
Q Consensus 410 VD 411 (513)
-+
T Consensus 97 p~ 98 (143)
T 3bom_A 97 PT 98 (143)
T ss_dssp TT
T ss_pred Hh
Confidence 33
No 191
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.23 E-value=2.6e+02 Score=23.37 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 472 VAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 472 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
-.+....|-+++++.--|.-.+.+...-+++..
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677777777777666666666666543
No 192
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=28.20 E-value=2.2e+02 Score=22.43 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHHH
Q 010298 393 VKEMMAVLKDVESAQIDVDWLRNILNEISEAI 424 (513)
Q Consensus 393 L~ea~~~L~dLe~aGfKVDWLekKLeEV~Ear 424 (513)
|.++...|......|-.++=++..|.+.....
T Consensus 18 L~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~ 49 (119)
T 3uun_A 18 LLSAEDTLQAQGEISNDVEVVKDQFHTHEGYM 49 (119)
T ss_dssp HHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34455556666666776666666555444333
No 193
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=28.12 E-value=2.5e+02 Score=23.03 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 010298 472 VAKTKARLSDLELESNRLEQIIQATQS 498 (513)
Q Consensus 472 v~e~k~RL~~LE~ess~L~k~v~~~kS 498 (513)
+.+..+|..+|...-..|+..|.++..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 194
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.70 E-value=73 Score=27.36 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH---HHHHhhhhhhhccccch
Q 010298 448 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ---IIQATQSKVTKFSQKSL 508 (513)
Q Consensus 448 kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k---~v~~~kSKV~kF~~kSl 508 (513)
.+.|+.++++|.+.|+++.+ .|..+...|.+|-.......- |-.++++ +..|.+.++
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~---~i~~~~~~l~~lted~~n~~~aYVT~~Di~~-i~~f~~qtv 67 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDH---LMNICTTQLRLLSEDTDSQRLAYVTCQDLRS-IADPAEQMV 67 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCHHHHHHCEEEHHHHHT-TSCTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccccceecHHHHhc-CcCCCcCeE
Confidence 34555566677877877776 677777777777754322110 1134444 556666554
No 195
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.55 E-value=71 Score=23.82 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010298 466 AGLKESVAKTKARLSDLELESNRLEQII 493 (513)
Q Consensus 466 ~d~~erv~e~k~RL~~LE~ess~L~k~v 493 (513)
.|+.+|-+++..||..||.+...|...|
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666655554443
No 196
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.41 E-value=4.5e+02 Score=28.31 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHH
Q 010298 441 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 441 e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k 491 (513)
+..+.+.-.+||.+++.|.++-..- + .+|..++.-|.++--+-.+|+.
T Consensus 106 dn~~~e~S~eLe~ri~yIK~kVd~q--i-~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQRVATQ--V-NRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666555332221 1 4555555555554444444443
No 197
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=27.41 E-value=91 Score=26.86 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=30.7
Q ss_pred HHHHHHHHhHcccccccCc----c-------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCN----L-------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~----l-------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|. + .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 3d1k_B 25 PKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSSHHHHHHCHHHHHHHHHHHHHTHHHHHTGG
T ss_pred HHHHHHHHHHCHhHHHHhcccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999987775 3 3466665 47777777777653
No 198
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=27.36 E-value=3e+02 Score=30.63 Aligned_cols=76 Identities=12% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhHHH----hcCcchhhhhhHHHHHHHHHHhhhh-----hhhHHHHHHhhHHHHHH--HHHHHHHHHHHH
Q 010298 390 KAKVKEMMAVLKDVE----SAQIDVDWLRNILNEISEAIEFSTQ-----HQTIDAAKANCVNLLES--TKKELESQMNEL 458 (513)
Q Consensus 390 ~~dL~ea~~~L~dLe----~aGfKVDWLekKLeEV~Eare~~~~-----~~~le~eKd~~e~~~e~--~kkELEe~leeL 458 (513)
..|++.+..+|++|+ ++|++-+|-. |++-+-.+.--++- ...+...++.+++-+.. ..+||...+..|
T Consensus 714 NkDFSKv~etlk~L~~SvKDlgINqEv~d-KIDNLNQAlsefKnGKngDFSkVeQAlsDLknSkkdLsrNQELtqKVdNL 792 (876)
T 4dvy_P 714 NKDFSKAEETLKALKGSVKDLGINPEWIS-KVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNL 792 (876)
T ss_dssp -------CCHHHHHHHHHHHSTTCHHHHH-HHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhHHHHhccCHHHHH-HHHHHHHHHHHhcCCCccCchhhhhhhhHHHhhHHhhhhhHHHHHHHHHH
Confidence 456777777777765 6899988854 44444433321111 33344444444433333 467777778888
Q ss_pred HHHHHHHh
Q 010298 459 ALKEKEVA 466 (513)
Q Consensus 459 ~qKekev~ 466 (513)
.|...+.+
T Consensus 793 NQAVsEaK 800 (876)
T 4dvy_P 793 NQAVSVAK 800 (876)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766555
No 199
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=27.26 E-value=5.3e+02 Score=26.60 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010298 470 ESVAKTKARLSDLEL 484 (513)
Q Consensus 470 erv~e~k~RL~~LE~ 484 (513)
+.+.+++.+|.+||+
T Consensus 101 ~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 101 AELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555554
No 200
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=27.20 E-value=1.1e+02 Score=26.51 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.6
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (147)
T 3bom_B 25 PQALARLLIVSPWTQRHFSTFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLD 79 (147)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGSCCSSHHHHHTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCccHHHHccccccCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999998877753 4566654 56677777766553
No 201
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=27.01 E-value=3.2e+02 Score=23.90 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010298 438 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQA 495 (513)
Q Consensus 438 d~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~ 495 (513)
+...+.+..-..-|..|...+..-.+||+.+..+++++....--+|.+..+|.+.|..
T Consensus 51 aanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 51 AANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 202
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=26.57 E-value=1.2e+02 Score=26.10 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|.-|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~~~~~h~~~v~~al~~~v~~ld 76 (143)
T 1out_A 27 AEALGRMLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMD 76 (143)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCccHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 57889999999998876643 4556654 66777777776553
No 203
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=26.50 E-value=62 Score=27.78 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=30.9
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ld 79 (146)
T 2r80_B 25 AEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGGGGCCCSSHHHHHHCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChhHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999998877753 4666665 47777777777664
No 204
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=26.39 E-value=13 Score=26.51 Aligned_cols=8 Identities=50% Similarity=1.323 Sum_probs=6.4
Q ss_pred CCcchhhH
Q 010298 74 NPYHECGE 81 (513)
Q Consensus 74 NPyHeC~e 81 (513)
-|||||+-
T Consensus 7 rpfhecal 14 (36)
T 2jyp_A 7 RPFHECAL 14 (36)
T ss_dssp TTTTCCSS
T ss_pred Cccchhee
Confidence 59999973
No 205
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.25 E-value=3.1e+02 Score=23.56 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.4
Q ss_pred hhhhhhHHHHHH
Q 010298 410 VDWLRNILNEIS 421 (513)
Q Consensus 410 VDWLekKLeEV~ 421 (513)
++-|+..|..+.
T Consensus 7 ~e~lre~l~~le 18 (97)
T 2eqb_B 7 YNQLKEDYNTLK 18 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 206
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=26.21 E-value=4e+02 Score=26.12 Aligned_cols=43 Identities=5% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHhHcccccccCcccchhH---HHHHHHHHHHHHHHHhcch
Q 010298 342 SILQSIISRYGDIAANCNLESNSM---RAYYLECLCSVVQELQSTS 384 (513)
Q Consensus 342 ~iV~~IFeKHPDIAsnf~lKs~~l---Rs~YMn~Ll~LIetL~ksp 384 (513)
.+..++|+.||++-.-|..-|+.+ ..+.+..|+.++..|....
T Consensus 27 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~~~~ld~~~ 72 (399)
T 4g1v_A 27 TFYKNMLTEHTELLNIFNRTNQKVGAQPNALATTVLAAAKNIDDLS 72 (399)
T ss_dssp HHHHHHHHHCGGGGGTSCHHHHHTSSHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHhChhHHhhCCCccccchHHHHHHHHHHHHHHHhccCHH
Confidence 568899999999999888655433 4567888888888776543
No 207
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=26.05 E-value=4.7e+02 Score=25.56 Aligned_cols=63 Identities=8% Similarity=0.280 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 010298 439 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVT 501 (513)
Q Consensus 439 ~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~ 501 (513)
+.+.++..+.-+|..+-+-+..-++.+.+..-|+....+.+.-|+.+...|..+|.+..+++.
T Consensus 81 dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Is 143 (242)
T 3c9i_A 81 DHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNIS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchh
Confidence 344455555555555555555555666666666666666666666666666555555555544
No 208
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=26.02 E-value=2.9e+02 Score=23.93 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=37.9
Q ss_pred HHHHHHHHhHcccccccCc----ccchhHHHH---HHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhc
Q 010298 341 SSILQSIISRYGDIAANCN----LESNSMRAY---YLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA 406 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~----lKs~~lRs~---YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe~a 406 (513)
..++.++|+.||++-.-|. ..|+.++.- .|..|..+|..|... +.|..+...|...=..
T Consensus 33 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~aH~~~v~~~l~~~v~~ldd~-------~~l~~~l~~L~~~H~~ 98 (145)
T 2zs0_D 33 VAIFDVFFTSSGVSPSMFPGGGDSSSAEFLAQVSRVISGADIAINSLTNR-------ATCDSLLSHLNAQHKA 98 (145)
T ss_dssp HHHHHHHHHHHCCCGGGSGGGGCTTSHHHHHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHhcc
Confidence 5789999999999988774 456777654 445555555555432 3455555555555443
No 209
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=25.92 E-value=92 Score=26.88 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=30.1
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 1out_B 25 PLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMG 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHhhcCHhHHHHHHHhCCCCcHHHhccCHHHHHHHHHHHHHHHHHHHhHh
Confidence 57899999999999887753 3666665 56677777766553
No 210
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=25.80 E-value=77 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~d~~~~n~~~~~h~~~v~~al~~~v~~ld 76 (143)
T 1xq5_A 27 SDALSRMLAVYPQTKTYFSHWKDLSPGSAPVNKHGKTIMGGIVDAVASID 76 (143)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhHh
Confidence 47899999999999877753 4777765 57777777776654
No 211
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=25.68 E-value=3.1e+02 Score=23.34 Aligned_cols=68 Identities=6% Similarity=0.066 Sum_probs=46.3
Q ss_pred HHHHHHHHhHcccccccCcc---------cchhHH---HHHHHHHHHHHHHHhcchhhhc-----cHHHHHHHHHHHhHH
Q 010298 341 SSILQSIISRYGDIAANCNL---------ESNSMR---AYYLECLCSVVQELQSTSLMQM-----TKAKVKEMMAVLKDV 403 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l---------Ks~~lR---s~YMn~Ll~LIetL~kspl~eL-----S~~dL~ea~~~L~dL 403 (513)
..+..++|+.||++-.-|.. .|+.++ ..+|..|..+|..|.... .| .-.+|...+..
T Consensus 34 ~~fy~rlf~~~P~~k~~F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~--~l~~~~~~l~~Lg~~H~~---- 107 (162)
T 2oif_A 34 LRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAG--KITVRETTLKRLGGTHLK---- 107 (162)
T ss_dssp HHHHHHHHHHCGGGGGGCHHHHTCCSCGGGCHHHHHHHHHHHHHHHHHHHTHHHHT--SCCCSSSCHHHHHHHHHH----
T ss_pred HHHHHHHHHHChHHHHhcccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCHH--hhhhHHHHHHHHHHHHHh----
Confidence 46788899999999988864 677775 457888888888886533 23 34455555544
Q ss_pred HhcCcchhhhhhH
Q 010298 404 ESAQIDVDWLRNI 416 (513)
Q Consensus 404 e~aGfKVDWLekK 416 (513)
-||.-+|...-
T Consensus 108 --~gV~p~~f~~~ 118 (162)
T 2oif_A 108 --YGVADGHFEVT 118 (162)
T ss_dssp --TTCCHHHHHHH
T ss_pred --cCCCHHHHHHH
Confidence 26666655443
No 212
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.53 E-value=1.7e+02 Score=25.58 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=13.1
Q ss_pred hhhhhhHHHHHHHHHHhhh
Q 010298 410 VDWLRNILNEISEAIEFST 428 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~ 428 (513)
++|++...+.+.+...+++
T Consensus 6 ~~~~~~~~~~l~~~a~~Lk 24 (171)
T 2zvf_A 6 IEAVEEMERLLREASSILR 24 (171)
T ss_dssp THHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4677777777777776665
No 213
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.49 E-value=2.2e+02 Score=26.39 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 010298 470 ESVAKTKARLSDLE 483 (513)
Q Consensus 470 erv~e~k~RL~~LE 483 (513)
++|.+....+.+|.
T Consensus 113 akI~aL~~Ei~~Lr 126 (175)
T 3lay_A 113 AKINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555444
No 214
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=25.03 E-value=1.3e+02 Score=25.21 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=31.6
Q ss_pred HHHHHHHHhHcccccccCccc------------chhHH---HHHHHHHHHHHHHHhcc
Q 010298 341 SSILQSIISRYGDIAANCNLE------------SNSMR---AYYLECLCSVVQELQST 383 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lK------------s~~lR---s~YMn~Ll~LIetL~ks 383 (513)
..+..++|+.||++-.-|... |+.++ ...|..|..+|..|...
T Consensus 25 ~~~y~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~ 82 (151)
T 1q1f_A 25 TVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDL 82 (151)
T ss_dssp HHHHHHHHHHCGGGGGGCCBTTBCCSSHHHHTTCHHHHHHHHHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHChHHHHhCCccccccccHHHHhhChHHHHHHHHHHHHHHHHHHhcCCH
Confidence 578899999999999988753 23344 35677777777777654
No 215
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=24.97 E-value=4.1e+02 Score=27.71 Aligned_cols=51 Identities=6% Similarity=0.082 Sum_probs=26.7
Q ss_pred HHHHHHHHhHHHhcCcchhhhhhHHHHHHHH---------HHhhhhhhhHHHHHHhhHHHHHH
Q 010298 393 VKEMMAVLKDVESAQIDVDWLRNILNEISEA---------IEFSTQHQTIDAAKANCVNLLES 446 (513)
Q Consensus 393 L~ea~~~L~dLe~aGfKVDWLekKLeEV~Ea---------re~~~~~~~le~eKd~~e~~~e~ 446 (513)
|...+..+.+++ =.+.||..|-..+.-. --+.++|+.++.+-+..+..+..
T Consensus 92 Le~L~qFl~d~~---ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~~ 151 (450)
T 3r6n_A 92 LRQLQNIIQATS---REIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNK 151 (450)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHchHHHHH
Confidence 333444444444 4579999987654311 12234566666665544444444
No 216
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=24.89 E-value=1.6e+02 Score=27.25 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=15.0
Q ss_pred hccHHHHHHHHHHHhHHHhcCcchh
Q 010298 387 QMTKAKVKEMMAVLKDVESAQIDVD 411 (513)
Q Consensus 387 eLS~~dL~ea~~~L~dLe~aGfKVD 411 (513)
-.|.++|..+. .+..|++.||-|+
T Consensus 44 ~y~~~~~~~l~-~i~~l~~~g~~l~ 67 (278)
T 1r8e_A 44 YYTDSQLIHLD-LIKSLKYIGTPLE 67 (278)
T ss_dssp EEETGGGGHHH-HHHHHHHTTCCHH
T ss_pred ccCHHHHHHHH-HHHHHHHCCCCHH
Confidence 35566665544 4566678888765
No 217
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.73 E-value=4e+02 Score=24.21 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=16.2
Q ss_pred HHHHHHHHHH-HhhhhHHHHHHHhhhhhhhc
Q 010298 474 KTKARLSDLE-LESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 474 e~k~RL~~LE-~ess~L~k~v~~~kSKV~kF 503 (513)
+.+.+|.-+= .-..++.+.+..|+-|+.-+
T Consensus 132 elR~kl~P~~eeL~~~~~~~~eeLr~kL~p~ 162 (165)
T 1gs9_A 132 ELRVRLASHLRKLRKRLLRDADDLQKRLAVY 162 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 5565555432 33455555666666666543
No 218
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=24.70 E-value=4.3e+02 Score=24.66 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=11.7
Q ss_pred hccHHHHHHHHHHHhHH
Q 010298 387 QMTKAKVKEMMAVLKDV 403 (513)
Q Consensus 387 eLS~~dL~ea~~~L~dL 403 (513)
.||++++..|......+
T Consensus 118 ~Ls~eeI~~m~~~a~~~ 134 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEAN 134 (219)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 47888887777665554
No 219
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.55 E-value=2.9e+02 Score=22.62 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 010298 471 SVAKTKARLSDLELESNRLEQ 491 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k 491 (513)
+...+..+-.+||....+|..
T Consensus 64 ~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 64 KVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433
No 220
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.31 E-value=3.2e+02 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q 010298 440 CVNLLESTKKELE 452 (513)
Q Consensus 440 ~e~~~e~~kkELE 452 (513)
.++-+.+.+.||-
T Consensus 45 yEkKLKsTK~El~ 57 (81)
T 3qh9_A 45 YEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHH
Confidence 3333333333333
No 221
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.17 E-value=4.2e+02 Score=28.33 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=10.7
Q ss_pred CCCCCcccccccccccccc
Q 010298 171 GTPLTPRAVDKVAVGGQKA 189 (513)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~ 189 (513)
=.|.-|.-+-||+.|=|++
T Consensus 136 lp~~iP~lLvNGs~GIavG 154 (470)
T 3ilw_A 136 LPSRFPNLLANGSGGIAVG 154 (470)
T ss_dssp CCCSSCHHHHHCEECSSTT
T ss_pred ccccccHHHhcCCCccccc
Confidence 3445566677765554444
No 222
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.15 E-value=1.1e+02 Score=31.64 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=4.4
Q ss_pred hhhhHHHHHHH
Q 010298 412 WLRNILNEISE 422 (513)
Q Consensus 412 WLekKLeEV~E 422 (513)
=|+.-|+++.+
T Consensus 7 ~l~~el~~~~~ 17 (412)
T 3u06_A 7 ALSTEVVHLRQ 17 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 223
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=23.84 E-value=1.3e+02 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=13.5
Q ss_pred HHHHhh-hHHHHHHHHHHHHHHHH
Q 010298 462 EKEVAG-LKESVAKTKARLSDLEL 484 (513)
Q Consensus 462 ekev~d-~~erv~e~k~RL~~LE~ 484 (513)
-+.|.+ +-.|+.+|-.||-+||.
T Consensus 22 Fq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 22 FQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHh
Confidence 333333 45577777777777663
No 224
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.71 E-value=1.3e+02 Score=24.24 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 010298 448 KKELESQMNEL 458 (513)
Q Consensus 448 kkELEe~leeL 458 (513)
.++||.++.+|
T Consensus 31 i~~LE~~v~~l 41 (70)
T 1gd2_E 31 LKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 225
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=23.68 E-value=2e+02 Score=24.71 Aligned_cols=54 Identities=7% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHhHcccccccCcc-------cchhHHH---HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHH
Q 010298 341 SSILQSIISRYGDIAANCNL-------ESNSMRA---YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 404 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-------Ks~~lRs---~YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L~dLe 404 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|.-|.. |..+...|...=
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~----------l~~~l~~L~~~H 90 (144)
T 1spg_A 27 AEALGRMLVSFPQTKIYFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSIDN----------LVGGLSQLSELH 90 (144)
T ss_dssp HHHHHHHHHHCGGGGGGGTTSCSCSSTTSHHHHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHH
Confidence 57889999999998776642 3555544 577777777776533 555555555543
No 226
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.39 E-value=3.1e+02 Score=22.44 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF 503 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF 503 (513)
+..++..+..++..|+.....+.+.+..++.++...
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666665543
No 227
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.33 E-value=3.8e+02 Score=23.51 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 010298 471 SVAKTKARLSDLELESNRLEQIIQ 494 (513)
Q Consensus 471 rv~e~k~RL~~LE~ess~L~k~v~ 494 (513)
+|.+..++...-|.....|-+.+.
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 228
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.31 E-value=1.1e+02 Score=31.52 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=9.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhh
Q 010298 465 VAGLKESVAKTKARLSDLELESN 487 (513)
Q Consensus 465 v~d~~erv~e~k~RL~~LE~ess 487 (513)
++++++++.++.+.|.+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 229
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.25 E-value=3.6e+02 Score=23.18 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=38.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHH
Q 010298 411 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 490 (513)
Q Consensus 411 DWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~ 490 (513)
.-|+..|+++.-.+ +.++.+.++....++..+.+.|.++..-...|.++..++.-+.+.--.-++||.....|.
T Consensus 23 ~~LR~qid~~~~e~------a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 23 RELRRQVDQLTNDK------ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 34555555554333 334445555555666666665555444334444444444444433333344554444444
Q ss_pred HHHHHhh
Q 010298 491 QIIQATQ 497 (513)
Q Consensus 491 k~v~~~k 497 (513)
.-|.++|
T Consensus 97 eEl~FLK 103 (119)
T 3ol1_A 97 EEIAFLK 103 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 230
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.23 E-value=47 Score=27.68 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 010298 464 EVAGLKESVAKTKARLSDLELESNRLEQI 492 (513)
Q Consensus 464 ev~d~~erv~e~k~RL~~LE~ess~L~k~ 492 (513)
|+.-++++|.+..+|..+||.|.+-|...
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445678888999999999988887654
No 231
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.94 E-value=2.4e+02 Score=21.15 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhHHHHH
Q 010298 458 LALKEKEVAGLKESVA 473 (513)
Q Consensus 458 L~qKekev~d~~erv~ 473 (513)
++-.++|++.+|.+|+
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445666666555543
No 232
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.86 E-value=1.8e+02 Score=29.51 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010298 474 KTKARLSDL 482 (513)
Q Consensus 474 e~k~RL~~L 482 (513)
+++..|.+|
T Consensus 44 ~l~~~i~~l 52 (323)
T 1lwu_C 44 RLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 233
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=22.70 E-value=97 Score=26.68 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~s~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 1v4x_B 25 PKALARCLIVYPWTQRYFGAYGDLSTPDAIKGNAKIAAHGVKVLHGLDRAVKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGGTTSCCCSSHHHHHTCHHHHHHHHHHHHTTHHHHHCTT
T ss_pred HHHHHHHHHHCHhHHHHHHhhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999877752 4566765 56677777776553
No 234
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=22.70 E-value=1.9e+02 Score=24.69 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHHhHcccccccCc-----ccchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCN-----LESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~-----lKs~~lRs---~YMn~Ll~LIetL~ 381 (513)
..+..++|+.||++-.=|. ..|+.|+. ..|+.|..+|..|.
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~~~~~~~s~~~~~h~~~v~~al~~~v~~ld 74 (141)
T 2r80_A 26 GEALERLFITYPQTKTYFPHFDLSHGSAQIKGHGKKVAEALVEAANHID 74 (141)
T ss_dssp HHHHHHHHHHSGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCchHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 4788999999998776665 35666665 56777777776553
No 235
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=22.68 E-value=4.8e+02 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=26.7
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
|++.|.+.+|.++..+.+-|+..-+.+|=.+.|+.
T Consensus 142 pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~ 176 (256)
T 1zww_A 142 PLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG 176 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55777777888888888888887777777777764
No 236
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=22.67 E-value=1.2e+02 Score=25.94 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHHHHhHcccccccCcc------cchhHHH---HHHHHHHHHHHHH
Q 010298 341 SSILQSIISRYGDIAANCNL------ESNSMRA---YYLECLCSVVQEL 380 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l------Ks~~lRs---~YMn~Ll~LIetL 380 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|
T Consensus 26 ~~~~~rlF~~~P~~k~~F~~f~~~~~~n~~~~~h~~~v~~al~~~v~~l 74 (141)
T 1cg5_A 26 ADALARLFELHPQTKTYFSKFSGFEACNEQVKKHGKRVMNALADATHHL 74 (141)
T ss_dssp HHHHHHHHHHCGGGGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHCchHHHHhHHhCCCCCCCHhHHHHHHHHHHHHHHHHHhH
Confidence 47899999999998876643 3777776 4566666665544
No 237
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.42 E-value=2.5e+02 Score=23.84 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHHHh
Q 010298 390 KAKVKEMMAVLKDVES 405 (513)
Q Consensus 390 ~~dL~ea~~~L~dLe~ 405 (513)
-.++..+..+|..|..
T Consensus 31 i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 31 ISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 3567777777777764
No 238
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=22.40 E-value=1.1e+02 Score=26.42 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=29.1
Q ss_pred HHHHHHHHhHcccccccCcc-----------cchhHHH---HHHHHHHHHHHHHh
Q 010298 341 SSILQSIISRYGDIAANCNL-----------ESNSMRA---YYLECLCSVVQELQ 381 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-----------Ks~~lRs---~YMn~Ll~LIetL~ 381 (513)
..++.++|+.||++-.-|.- .|+.++. ..|+.|..+|..|.
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld 79 (146)
T 2aa1_B 25 PATLARCLVVYPWTQRYFGKFGNLYNAAAIAQNAMVSKHGTTILNGLDRAVKNMD 79 (146)
T ss_dssp HHHHHHHHHHSGGGGGGCGGGCCCSSHHHHHHCHHHHHHHHHHHHTTHHHHHCTT
T ss_pred HHHHHHHHHHCccHHHHHHHhcCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999998877743 3456554 56677777766553
No 239
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=22.37 E-value=55 Score=31.77 Aligned_cols=44 Identities=5% Similarity=-0.047 Sum_probs=34.2
Q ss_pred CCCcccccccccceEEeccEEeecchHHHHHHHHhHcccccccC
Q 010298 315 DSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANC 358 (513)
Q Consensus 315 ~~D~eE~~SvvsEtV~VnGFqVl~Sqv~iV~~IFeKHPDIAsnf 358 (513)
++|+-....+..+.|.++|+.|-+..++.+=.-+..||+|+.-+
T Consensus 239 d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~ 282 (358)
T 4gs5_A 239 HGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAF 282 (358)
T ss_dssp CSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCE
T ss_pred ccCceEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEE
Confidence 34554556777888999999999999987766677899987544
No 240
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.16 E-value=1.1e+02 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 472 VAKTKARLSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 472 v~e~k~RL~~LE~ess~L~k~v~~~kSKV~k 502 (513)
+...+.++..|+++..+|.+.+..+..++++
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 241
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=22.07 E-value=4e+02 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=7.8
Q ss_pred cCcchhhhhhHHHHH
Q 010298 406 AQIDVDWLRNILNEI 420 (513)
Q Consensus 406 aGfKVDWLekKLeEV 420 (513)
++|--|=|++-=+|+
T Consensus 19 ~NFT~~ELeSlK~EL 33 (109)
T 2fcw_A 19 ANLTDKELEAFREEL 33 (109)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 566666555533333
No 242
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=21.98 E-value=2.6e+02 Score=22.89 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 010298 468 LKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 505 (513)
Q Consensus 468 ~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~~ 505 (513)
....+..=-..|.++..+..++.-+|...-.++.+|..
T Consensus 49 mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 49 MGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666677777777777777777777777777754
No 243
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=21.83 E-value=3.5e+02 Score=24.42 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=4.7
Q ss_pred HHHHHhcch
Q 010298 376 VVQELQSTS 384 (513)
Q Consensus 376 LIetL~ksp 384 (513)
.++.|+++.
T Consensus 30 ~ve~l~~se 38 (185)
T 3r2p_A 30 YVSQFEGSA 38 (185)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHcch
Confidence 345555555
No 244
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=21.70 E-value=58 Score=32.60 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH----------------HHHHHHHhhhHHHHH
Q 010298 410 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNEL----------------ALKEKEVAGLKESVA 473 (513)
Q Consensus 410 VDWLekKLeEV~Eare~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL----------------~qKekev~d~~erv~ 473 (513)
|+||..--+++.+-..-..-.++++..+......+..-..+|.++|..+ .+..+.+.+.|.++.
T Consensus 45 ~~~~~~~a~~~~eql~~s~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~ 124 (307)
T 2l7b_A 45 LRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLV 124 (307)
T ss_dssp HHHTCCCSTHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHH-HHHHhhhhHHHHHHHhhhhhhh
Q 010298 474 ----KTKARLS-DLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 474 ----e~k~RL~-~LE~ess~L~k~v~~~kSKV~k 502 (513)
++..+|. ++|.-..+|......++.+|++
T Consensus 125 Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~ 158 (307)
T 2l7b_A 125 QYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLR 158 (307)
T ss_dssp HHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 245
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=21.60 E-value=4.3e+02 Score=27.98 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=13.3
Q ss_pred hhccHHHHHHHHHHHhHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVE 404 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe 404 (513)
..||++++..|......+.
T Consensus 505 ~~ls~~ei~~~~~~~~~~~ 523 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANA 523 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhH
Confidence 3688888888876665543
No 246
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=21.50 E-value=1.6e+02 Score=25.29 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=31.1
Q ss_pred HHHHHHHHhHcccccccCcc-cch---hHHHHHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL-ESN---SMRAYYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l-Ks~---~lRs~YMn~Ll~LIetL~k 382 (513)
..++.++|+.||++-.-|.- .++ .=....|+.|...|.-|..
T Consensus 25 ~~~~~rlF~~~P~~k~~F~~f~d~~~~~h~~~v~~al~~~v~~ld~ 70 (136)
T 1gcv_B 25 TQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDD 70 (136)
T ss_dssp HHHHHHHHHHSGGGGGGTTTCTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHChHHHHHhhcccCCCccHHHHHHHHHHHHHHHhHhh
Confidence 47899999999998887754 344 3345678888888876643
No 247
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.43 E-value=96 Score=21.81 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=12.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 010298 462 EKEVAGLKESVAKTKARLSDLEL 484 (513)
Q Consensus 462 ekev~d~~erv~e~k~RL~~LE~ 484 (513)
|+++..+..-+.++.+||.+||+
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556666666664
No 248
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.37 E-value=1.6e+02 Score=25.66 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 010298 451 LESQMNELALKEKEVAGLKESVAKTKARLSDLELES 486 (513)
Q Consensus 451 LEe~leeL~qKekev~d~~erv~e~k~RL~~LE~es 486 (513)
+-...++|++...++.++.+++.+++..+..||.++
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 249
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.32 E-value=2.3e+02 Score=29.13 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 010298 445 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS 504 (513)
Q Consensus 445 e~~kkELEe~leeL~qKekev~d~~erv~e~k~RL~~LE~ess~L~k~v~~~kSKV~kF~ 504 (513)
+.++.++++..++....|+.-.+ -=+++.+=.+-+-+|+-+|..+|-|++.|.
T Consensus 13 ~~~~~~~~~vq~kA~~~E~~Yn~-------~~dKmeqE~lrRRkLENSIdElKG~IRcFA 65 (333)
T 4etp_B 13 AALEKEIAALEKEISKQEKFYND-------TYNTVCKELLRSRRLENSIIEQKGTMRVYA 65 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHhcCcEEEEE
Confidence 34444444443444444443333 333444444667788899999999999993
No 250
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=21.23 E-value=89 Score=22.23 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 010298 474 KTKARLSDLELESNRLEQIIQAT 496 (513)
Q Consensus 474 e~k~RL~~LE~ess~L~k~v~~~ 496 (513)
-|-+||.+.|...+.+++.+..+
T Consensus 7 Sm~~Rl~kVE~qv~~md~KLd~l 29 (33)
T 2ovc_A 7 SMMGRVVKVEKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999998888887766554
No 251
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=20.98 E-value=1.9e+02 Score=24.97 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHhHcccccccCcc--------cchhHH---HHHHHHHHHHHHHHhc
Q 010298 341 SSILQSIISRYGDIAANCNL--------ESNSMR---AYYLECLCSVVQELQS 382 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~l--------Ks~~lR---s~YMn~Ll~LIetL~k 382 (513)
..+..++|+.||++-.-|.- .|+.++ ...|+.|..+|..|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~~H~~~v~~al~~~v~~ldd 87 (150)
T 4hrt_A 35 LMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDD 87 (150)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 36889999999999877753 244553 4688888888888754
No 252
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=20.98 E-value=4.3e+02 Score=27.99 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=14.2
Q ss_pred hhccHHHHHHHHHHHhHHH
Q 010298 386 MQMTKAKVKEMMAVLKDVE 404 (513)
Q Consensus 386 ~eLS~~dL~ea~~~L~dLe 404 (513)
..||++++..|...+..+.
T Consensus 505 ~~ls~~~i~~~~~~~~~~~ 523 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAEANA 523 (605)
T ss_dssp SSCCHHHHHHHHHHHHHSH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 4688888888877766654
No 253
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=20.96 E-value=5.7e+02 Score=24.68 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHHhhhhhhhccccchhh
Q 010298 490 EQIIQATQSKVTKFSQKSLAD 510 (513)
Q Consensus 490 ~k~v~~~kSKV~kF~~kSl~D 510 (513)
.++|...++++++|...|+=.
T Consensus 157 ~e~v~~~q~el~~f~~~s~r~ 177 (222)
T 3ok8_A 157 KESVNRLHAQMQAFVSESKRA 177 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 457788889999997766544
No 254
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=20.94 E-value=3.8e+02 Score=26.14 Aligned_cols=44 Identities=5% Similarity=0.225 Sum_probs=33.7
Q ss_pred HHHHHHHHhHcccccccCcccch---hHHHHHHHHHHHHHHHHhcch
Q 010298 341 SSILQSIISRYGDIAANCNLESN---SMRAYYLECLCSVVQELQSTS 384 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lKs~---~lRs~YMn~Ll~LIetL~ksp 384 (513)
..+..++|+.||++-.-|.--|+ .-....++.|..++.-|....
T Consensus 26 ~~fy~~lf~~~P~~~~~F~~~~~~~~~q~~~l~~~l~~~~~~ld~~~ 72 (396)
T 1gvh_A 26 AHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLP 72 (396)
T ss_dssp HHHHHHHHHHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHTTGGGGG
T ss_pred HHHHHHHHHhChhHHhhCCCcchhhHHHHHHHHHHHHHHHHhccChH
Confidence 35678899999999999987554 346778888888887776443
No 255
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.72 E-value=3e+02 Score=26.12 Aligned_cols=20 Identities=0% Similarity=-0.052 Sum_probs=10.9
Q ss_pred HHHhhhhhhhccccchhhhc
Q 010298 493 IQATQSKVTKFSQKSLADEI 512 (513)
Q Consensus 493 v~~~kSKV~kF~~kSl~D~l 512 (513)
+..++..+.+..-.+.+||.
T Consensus 144 l~~a~~~l~~~~i~AP~~G~ 163 (341)
T 3fpp_A 144 LDTAKTNLDYTRIVAPMAGE 163 (341)
T ss_dssp HTTTTTTTTSSEEECSSSEE
T ss_pred HHHHHHhhhCCEEECCCCeE
Confidence 33455555555556666654
No 256
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.67 E-value=91 Score=23.39 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=12.8
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhhh
Q 010298 479 LSDLELESNRLEQIIQATQSKVTK 502 (513)
Q Consensus 479 L~~LE~ess~L~k~v~~~kSKV~k 502 (513)
|..||-+...|++.+..+|||+.-
T Consensus 22 laaleselqalekklaalksklqa 45 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555556666543
No 257
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=20.41 E-value=3.9e+02 Score=24.94 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=22.9
Q ss_pred hhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 010298 384 SLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN 418 (513)
Q Consensus 384 pl~eLS~~dL~ea~~~L~dLe~aGfKVDWLekKLe 418 (513)
||+.+-+.||.++..+.+-|+..-+.+|=.+.|+.
T Consensus 126 pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~ 160 (240)
T 2z0v_A 126 PLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVG 160 (240)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44666666777777777777766666666666653
No 258
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=20.32 E-value=5.1e+02 Score=29.00 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=7.8
Q ss_pred CCCcchhhHHHhhh
Q 010298 73 SNPYHECGERCFKR 86 (513)
Q Consensus 73 sNPyHeC~e~C~~~ 86 (513)
..||+.|+.-.-.-
T Consensus 262 ~~~~~K~Ar~vG~V 275 (692)
T 2xcs_B 262 DKSYKKSARIVGDV 275 (692)
T ss_dssp TSCCEEHHHHHHHH
T ss_pred CCCceeehhhhHHH
Confidence 34677776644333
No 259
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.11 E-value=5.4e+02 Score=24.03 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHhhhhHHHHH
Q 010298 424 IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVA-------KTKARLSDLELESNRLEQII 493 (513)
Q Consensus 424 re~~~~~~~le~eKd~~e~~~e~~kkELEe~leeL~qKekev~d~~erv~-------e~k~RL~~LE~ess~L~k~v 493 (513)
+++-++++.+...++.+++.+-.+-..|+.+-....+-..-+.|...||. .++.|+..++.+.-.|...|
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777666666666665555555554444433333 33444444444444444444
No 260
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.06 E-value=5.2e+02 Score=23.89 Aligned_cols=134 Identities=12% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHhHcccccccCcccchhHHHH--------------------HHHHHHHHHHHHhcchhhhccHHHHHHHHHHH
Q 010298 341 SSILQSIISRYGDIAANCNLESNSMRAY--------------------YLECLCSVVQELQSTSLMQMTKAKVKEMMAVL 400 (513)
Q Consensus 341 v~iV~~IFeKHPDIAsnf~lKs~~lRs~--------------------YMn~Ll~LIetL~kspl~eLS~~dL~ea~~~L 400 (513)
+..|+..+.+|=.+-.++....+.+... .|+.|...-..|+... .--...|..+....
T Consensus 141 l~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~--~~R~~~L~~~~~~~ 218 (322)
T 1u4q_A 141 LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA--AARGQRLEESLEYQ 218 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred hHHHhcCcchhhhhhHHHHH---------HHHHHhhhhhhhHHHHHHhhHHHHHHH--------------HHHHHHHHHH
Q 010298 401 KDVESAQIDVDWLRNILNEI---------SEAIEFSTQHQTIDAAKANCVNLLEST--------------KKELESQMNE 457 (513)
Q Consensus 401 ~dLe~aGfKVDWLekKLeEV---------~Eare~~~~~~~le~eKd~~e~~~e~~--------------kkELEe~lee 457 (513)
.++.++.--..||..+-..+ ..+..++++|..+..+-+.....+..+ -..|...+..
T Consensus 219 qf~~~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~ 298 (322)
T 1u4q_A 219 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKG 298 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 010298 458 LALKEKEVAGLKESVAKTKARL 479 (513)
Q Consensus 458 L~qKekev~d~~erv~e~k~RL 479 (513)
|...-+.+.+ .+.+-+.||
T Consensus 299 l~~rw~~l~~---~~~~R~~~L 317 (322)
T 1u4q_A 299 LKGKVSDLEK---AAAQRKAKL 317 (322)
T ss_dssp HHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHH
Done!