BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010300
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 238 bits (607), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 233/451 (51%), Gaps = 63/451 (13%)
Query: 94 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
L GEGI E E++KWFVK GDE+ E LC VQ+DKA +EI S KGKV ++L G +
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 154 VKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSEN--------------------SPDSK 193
VG+TL+ L PG EN S + K
Sbjct: 67 ATVGQTLITL------------------DAPGYENMTFKGQEQEEAKKEEKTETVSKEEK 108
Query: 194 LNKDTVGG------------VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241
++ V+A P+VR A+ G+++ V TGK+GRVLKED+ +
Sbjct: 109 VDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 168
Query: 242 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA 301
+ +A + E +P+T + + G +R + K M +
Sbjct: 169 GGAKPAPAAAEEKAAPAAAKPATTEGEFPETREK-----------MSGIRRAIAKAMVHS 217
Query: 302 AKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360
PH ++E + LV + F+ ++ IK TFLP ++K+L A+ +YP +N+
Sbjct: 218 KHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI 277
Query: 361 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPA 420
++E+ E+I K +NIGIA T GL VP IK+ I + +E++ L + A+D +L P
Sbjct: 278 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPG 337
Query: 421 DNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 480
+ G + T++NIG+ GG++ P++N PEVAI+ +GRI + P + DG + +P++ +++
Sbjct: 338 EMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKP-IVRDGEIVAAPMLALSLS 396
Query: 481 ADHRVLDGATVAKFCNEWKQLIENPELLLLQ 511
DHR++DGAT K N K+L+ +PELLL++
Sbjct: 397 FDHRMIDGATAQKALNHIKRLLSDPELLLME 427
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 155/232 (66%)
Query: 282 DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPS 341
D+T P++GF + MVKTMS A KIPHF Y +E++ LVKL+ + IK +F+P
Sbjct: 31 DRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPF 90
Query: 342 LIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEI 401
+K+ S+ + ++P +N+ +E + K SHNIGIAM T+ GL VPN+KNVQ SI EI
Sbjct: 91 FLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEI 150
Query: 402 TKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVP 461
EL+RLQ+L +L+ D GGT TLSNIG+IGG + P++ PEVAI A+G I+ +P
Sbjct: 151 ATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALP 210
Query: 462 RLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 513
R ++ G V + IM V+ ADHR++DGATV++F N WK +ENP +LL ++
Sbjct: 211 RFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 262
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 139/225 (61%), Gaps = 2/225 (0%)
Query: 287 LRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKS 345
+ G +R + K M + PH ++E + LV + F+ ++ IK TFLP ++K+
Sbjct: 19 MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKA 78
Query: 346 LSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKEL 405
L A+ +YP +N+ ++E+ E+I K +NIGIA T GL VP IK+ I + +E+
Sbjct: 79 LVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEI 138
Query: 406 SRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSD 465
+ L + A+D +L P + G + T++NIG+ GG++ P++N PEVAI+ +GRI + P +
Sbjct: 139 NELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKP-IVR 197
Query: 466 DGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510
DG + +P++ +++ DHR++DGAT K N K+L+ +PELLL+
Sbjct: 198 DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 14/232 (6%)
Query: 282 DKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLP 340
++ + + G +R + M+ A +I PHF +EE++ ++V + S + N + FL
Sbjct: 6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVT-GFLA 64
Query: 341 SLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE 400
++ S+ + +YP++N+ ++E ILK +NIGIA+ T GL V IK+ S++E
Sbjct: 65 RIVPSI---LKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVE 121
Query: 401 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKV 460
I+ E+S A++N+L + T T++N+G IGG P++N PEVAI+ + RI
Sbjct: 122 ISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRI--- 178
Query: 461 PRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 512
L +G Y M +++ DHR++DGA +F + K++IE+P ++ ++
Sbjct: 179 --LEREGRKY----MYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 10/236 (4%)
Query: 280 PDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTF 338
PD + P+ G M + M+++ K IP E+ C L++L+ F + + P I T
Sbjct: 14 PDVR--PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS--AAPEI--TP 67
Query: 339 LPSLIKSLSMAMSKYPFMNSCFNE--ESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSL 396
++ L +A+ +NS + + E +V + ++G AT+ GL VP + + Q
Sbjct: 68 FALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDK 127
Query: 397 SILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGR 456
+ E+ ++ L A++ L PA+ G T T+SN GA+G G P++N PE AI+ +G
Sbjct: 128 NTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGA 187
Query: 457 IEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 512
I+ P + G V P MT+ DHRV+DGA VA+F E + LIE+PE LL +
Sbjct: 188 IKPRPVVV-GGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 5/230 (2%)
Query: 276 VKWYPDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNN-NSDPN 333
V+ DK +P+ G ++ + K MS++ + IPH + E++ LV+ + + +++ +
Sbjct: 12 VRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEG 71
Query: 334 IKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNV 393
T+ IK+++ A+ ++P +NS + + ++I + NI IA+A L VP IKN
Sbjct: 72 YSLTYFAFFIKAVAQALKEFPQLNSTWAGD--KIIEHANINISIAIAAGDLLYVPVIKNA 129
Query: 394 QSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIA 453
SI I +E+S L A++ +L+ AD GGT T+++ G+ G ++N P+ AI+
Sbjct: 130 DEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQ 189
Query: 454 MGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 503
+ I K P + DD + ++ + + DHR+LDG KF K +E
Sbjct: 190 VESIVKRPVIIDD-MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVE 238
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Query: 312 EINCDALVKLKASF-QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 370
E+N ++ L+ + + I+ F+ +K++ A+ +YP +N+ + + +V+
Sbjct: 35 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVYH 92
Query: 371 GSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLS 430
++ +A++T GL P +++V +L + +I K++ L +D +L D +GG T++
Sbjct: 93 NYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTIT 152
Query: 431 NIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGAT 490
N G G P++N P+ AI+ M I+ P ++ +G V P+M + + DHR++DG
Sbjct: 153 NGGVFGSLMSTPIINPPQSAILGMHAIKDRP-MAVNGQVEILPMMYLALSYDHRLIDGRE 211
Query: 491 VAKFCNEWKQLIENPELLLLQM 512
F K+L+E+P LLL +
Sbjct: 212 SVGFLVTIKELLEDPTRLLLDV 233
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 363
+PH E + L + + + +K T LP L+K+ + + + P NS
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 364 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 423
+I K +IG A+ T GL VP I+NV S+L++ E + L + A+ +L
Sbjct: 98 GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 424 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 482
G T+S++G IGG P++N PEVAI+ + + P DG + P ++ +++ D
Sbjct: 158 GACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 483 HRVLDGATVAKFCNEWKQLIENPELLLL 510
HRV+DGA A+F L+ + +LL
Sbjct: 216 HRVIDGAAAARFTKRLGDLLADIRAILL 243
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 285 VPLRGFQRTMV-KTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLI 343
+P+ +R + + M IPH++ ++N ++ ++ N + K + +I
Sbjct: 15 IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRSKISVNDFII 73
Query: 344 KSLSMAMSKYPFMNSCFNEESLEVILKGSH--NIGIAMATQHGLAVPNIKNVQSLSILEI 401
K+ ++A K P NS + ++ +++ +H ++ +A++T GL P + N + I
Sbjct: 74 KASALACLKVPEANSSW----MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETI 129
Query: 402 TKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEK-- 459
++ L A++ +L P + GGT T+SN+G G K + ++N P+ I+A+G E
Sbjct: 130 ANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKL 189
Query: 460 VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510
VP ++ G S +M+V + DHRV+DGA A++ E+++ +E P +LL
Sbjct: 190 VPADNEKGFDVAS-MMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 363
+PH E + L + + + +K T LP L+K+ + + + P NS
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 364 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 423
+I K +IG A+ T GL VP I+NV S+L++ E + L + A+ +L
Sbjct: 98 GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 424 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 482
G T+S++G IGG P++N PEVAI+ + + P DG + P ++ +++ D
Sbjct: 158 GACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 483 HRVLDGATVAKFCNEWKQLIENPELLLL 510
HRV++GA A+F L+ + +LL
Sbjct: 216 HRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 363
+PH E + L + + + +K T LP L+K+ + + + P NS
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 364 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 423
+I K +IG A+ T GL VP I+NV S+L++ E + L + A+ +L
Sbjct: 98 GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 424 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 482
G T++++G IGG P++N PEVAI+ + + P DG + P ++ +++ D
Sbjct: 158 GACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 483 HRVLDGATVAKFCNEWKQLIENPELLLL 510
HRV++GA A+F L+ + +LL
Sbjct: 216 HRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 3/208 (1%)
Query: 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 363
+PH E + L + + + +K T LP L+K+ + + + P NS
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 364 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 423
+I K +IG A+ T GL VP I+NV S+L++ E + L + A+ +L
Sbjct: 98 GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 424 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 482
G T+S++G IGG P++N PEVAI+ + + P DG + P ++ +++ D
Sbjct: 158 GACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 483 HRVLDGATVAKFCNEWKQLIENPELLLL 510
RV++GA A+F L+ + +LL
Sbjct: 216 CRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 94 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
L GEGI E E++KWFVK GDE+ E LC VQ+DKA +EI S KGKV ++L G +
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 154 VKVGETLLKL 163
VG+TL+ L
Sbjct: 66 ATVGQTLITL 75
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 72.0 bits (175), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148
+V L+ GEGI E + +W+VKEGD + +F +C VQSDKA++ ITSRY G + +L +
Sbjct: 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 63
Query: 149 APGNIVKVGETLLKL 163
+I VG+ L+ +
Sbjct: 64 NLDDIAYVGKPLVDI 78
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 94 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153
L GEG+ E E+++W VKEGD +E+ Q L V +DK T++I S +GK+ ++L+ G +
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 154 VKVGETLLKL 163
V VG TLL++
Sbjct: 66 VPVGSTLLQI 75
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 335 KHTFLPSLIKSLSMAMSKYPFMNSCFN--EESLEVILKGSHNIGIAMATQ-----HGLAV 387
K +F L ++ A+ K+P MN F + I N+G+A+ Q L V
Sbjct: 40 KISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVV 99
Query: 388 PNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLP 447
IK +++ + + + A+D +L D SG TI+L+N G +G P L
Sbjct: 100 AAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159
Query: 448 EVAIIAMGRIE--------KVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK 499
+ AII G +E R++D G ++T+ DHR++ GA F
Sbjct: 160 QGAIIGAGAMEYPAEFQGASEERIADLG---IGKLITLTSTYDHRIIQGAESGDFLRTIH 216
Query: 500 QLIENPELL 508
QL+ + +
Sbjct: 217 QLLLDDDFF 225
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
LATP VRNLA I L +V +GKDGR+LKED+L Y
Sbjct: 9 LATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNY 45
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA----DGPSTA 252
LATP VR LA I L +V +GKDGR+LKED+L Y ++ A GPS+
Sbjct: 16 TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSGPSSG 70
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
LATP VR LA I L +V +GKDGR+LKED+L Y
Sbjct: 9 LATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNY 45
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 6 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 40
>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit-
Binding Domain Of Dihydrolipoamide Acetyltransferase
From The Pyruvate Dehydrogenase Multienzyme Complex Of
Bacillus Stearothermophilus
Length = 43
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 1 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 35
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGET 159
+ E ++KW KEG+ + LC +++DKA + + + G +A+++ G+ +++G +
Sbjct: 15 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLG-S 73
Query: 160 LLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSK---------------LNKDTVGGVLA 204
L+ L+V + ++ + V PP P SK + K+ + G L
Sbjct: 74 LIGLIV-EEGEDWKHVEIPKDVGPP----PPVSKPSEPRPSPEPQISIPVKKEHIPGTLR 128
Query: 205 ---TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 238
+P RN+ + + ++ ATG G KED LK
Sbjct: 129 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALK 165
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 6 VIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKEDI 40
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 7 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 41
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
V+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 13 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 47
>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral
Subunit-Binding Domain Of Dihydrolipoamide
Acetyltransferase From The Pyruvate Dehydrogenase
Multienzyme Complex Of Bacillus Stearothermophilus
Length = 43
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 2 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 35
>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 41
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236
+A P+VR A+ G+++ V TGK+GRVLKED+
Sbjct: 1 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDI 34
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
+D+ E IA+ + W K G+ ++ + + +++DK +E+ + G +A+++
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 150 PGNIVKVGETLLKLVVG 166
G+ V GE L KL G
Sbjct: 62 EGDTVLSGELLGKLTEG 78
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161
E E+ + VK GD++ Q L V+ DKA++E+ + + G V +L G+ VK G ++
Sbjct: 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM 72
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLL 161
E ++KW KEG+ + LC +++DKA + + + G +A+++ G+ +++G +L+
Sbjct: 21 EGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLG-SLI 79
Query: 162 KLVV 165
L+V
Sbjct: 80 GLIV 83
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 196 KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVS 255
+D GG T R + +L G LYD+DA+ L+ VL+Y Q+ A VS
Sbjct: 2 EDQKGGAAYTDRDRKILQLCG-ELYDLDASS-----LQLKVLQYLQQETRASRCCLLLVS 55
Query: 256 AD-----CR---EQLLGEEETYPQTFAEVKWYPDDKTVPLR 288
D C+ +++LGEE ++P T + D K++ L+
Sbjct: 56 EDNLQLSCKVIGDKVLGEEVSFPLTGCLGQVVEDKKSIQLK 96
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
V A P R LAK GI+L V TG G + EDV +YA
Sbjct: 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYA 43
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161
E+ + VK GD++ Q L V+ DKA++E+ + + G V +L G+ VK G ++
Sbjct: 11 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM 68
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
L K VK GD+IE+ Q + ++S K I I + G V ++ G+ V G+ LL+L
Sbjct: 10 LWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
A P++R LA+ G++L + TG GR+ +EDV + A
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 151
VPL + + +W KEGD+I E + V++DKAT+ S + +A++L A G
Sbjct: 10 VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
Query: 152 N 152
Sbjct: 70 T 70
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240
+LA P R LA+ GI + +V +G GRV EDV YA
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149
VD+ + E +A+ + W K GD + + L +++DK +E+ + G + +L
Sbjct: 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62
Query: 150 PGNIVKVGETLLKLVVGD 167
G V + L +L G+
Sbjct: 63 EGTTVTSRQILGRLREGN 80
>pdb|2EQ7|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
Length = 40
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239
LA P L + G++ +V TG GR+LKEDV+++
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRH 37
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 247 DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPH 306
DGP+T + E+ TYP F +V +DKT + FQR K+ K H
Sbjct: 27 DGPATILAIGTSNPTNIFEQSTYPDFFFDVT-NCNDKTELKKKFQRICDKS---GIKKRH 82
Query: 307 FHYVEEI 313
FH +EI
Sbjct: 83 FHLTDEI 89
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147
G + PLA T + K VKEGD ++ Q + +++ K EI + GKV ++L
Sbjct: 9 GEIPAPLAGT--------VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Query: 148 HAPGNIVKVGETLLKL 163
+ V+ G+ L+K+
Sbjct: 61 VKERDAVQGGQGLIKI 76
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 32.0 bits (71), Expect = 0.78, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 246
V A P R LAK GI+ V TG G + EDV ++A + A
Sbjct: 5 VAAMPAARRLAKELGIDASKVKGTGPGGVITVEDVKRWAEETAKA 49
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
K VKEGD ++ Q + +++ K EI + GKV ++L + V+ G+ L+K+
Sbjct: 28 KILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 83
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
++K V+ G E++E Q LC +++ K + + KG VA++ + GN + V + +++
Sbjct: 623 IVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide
Phosphodiesterase 2a, Containing The Gaf A And Gaf B
Domains
Length = 368
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 209 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSAD-----CR---E 260
R + +L G L+D+DAT L+ VL+Y Q+ A VS D C+ +
Sbjct: 14 RKILQLCG-ELFDLDATS-----LQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGD 67
Query: 261 QLLGEEETYPQTFAEVKWYPDDK 283
++LGEE ++P T + +DK
Sbjct: 68 KVLGEEVSFPLTMGRLGQVVEDK 90
>pdb|1BA7|A Chain A, Soybean Trypsin Inhibitor
pdb|1BA7|B Chain B, Soybean Trypsin Inhibitor
pdb|1AVU|A Chain A, Trypsin Inhibitor From Soybean (Sti)
Length = 181
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 414 DNELNPADNSGGTITLSNIGAIGGKFGAPLLN--LPEVAIIAMGRIEKVPRLSDDGNVYP 471
DNE NP +N G LS+I A GG AP N P + + ++K G +
Sbjct: 5 DNEGNPLENGGTYYILSDITAFGGIRAAPTGNERCPLTVVQSRNELDKGI-----GTIIS 59
Query: 472 SPIMTVNIGADHRV---LDGATVAKFC----NEWKQLIENPE 506
SP I H + D V C EW + + PE
Sbjct: 60 SPYRIRFIAEGHPLSLKFDSFAVIMLCVGIPTEWSVVEDLPE 101
>pdb|1AVW|B Chain B, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|B Chain B, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
Length = 177
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 414 DNELNPADNSGGTITLSNIGAIGGKFGAPLLN 445
DNE NP +N G LS+I A GG AP N
Sbjct: 5 DNEGNPLENGGTYYILSDITAFGGIRAAPTGN 36
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163
VK GD + E Q +C +++ K +T+ G V + G+ V G+ L++L
Sbjct: 41 VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 115 DEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 159
DE+ +P C +Q D+AT +T +A + A G++ GET
Sbjct: 98 DELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGET 142
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 114 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164
GD +E + +++ K + + + GKV ++LH G++V+ G+ + +V
Sbjct: 1186 GDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152
+W K G+++ E L +++DKATI + +G +A++L G
Sbjct: 28 RWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 72
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152
+W K G+++ E L +++DKATI + +G +A++L G
Sbjct: 46 RWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,917,390
Number of Sequences: 62578
Number of extensions: 599728
Number of successful extensions: 1885
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1816
Number of HSP's gapped (non-prelim): 61
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)