Query 010300
Match_columns 513
No_of_seqs 301 out of 2165
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 22:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0558 Dihydrolipoamide trans 100.0 5.2E-96 1E-100 717.7 27.5 429 70-513 45-474 (474)
2 PRK05704 dihydrolipoamide succ 100.0 2.2E-90 4.8E-95 726.8 44.4 403 90-512 3-407 (407)
3 TIGR01347 sucB 2-oxoglutarate 100.0 2.7E-90 5.9E-95 724.6 44.5 401 90-512 1-403 (403)
4 PLN02528 2-oxoisovalerate dehy 100.0 1.2E-89 2.7E-94 723.6 44.9 416 92-513 1-416 (416)
5 PLN02744 dihydrolipoyllysine-r 100.0 4.1E-89 8.8E-94 731.0 42.8 415 70-510 97-539 (539)
6 TIGR02927 SucB_Actino 2-oxoglu 100.0 1.2E-87 2.7E-92 736.0 42.9 413 89-506 135-583 (590)
7 TIGR01348 PDHac_trf_long pyruv 100.0 4.2E-86 9E-91 718.8 44.2 413 89-510 116-546 (546)
8 TIGR01349 PDHac_trf_mito pyruv 100.0 9.7E-86 2.1E-90 697.6 44.0 403 92-510 2-435 (435)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 1.1E-83 2.3E-88 675.6 37.2 402 89-511 2-404 (404)
10 PRK11854 aceF pyruvate dehydro 100.0 1.2E-82 2.5E-87 703.7 44.9 415 88-510 205-633 (633)
11 PLN02226 2-oxoglutarate dehydr 100.0 5.2E-82 1.1E-86 663.6 43.2 370 89-512 91-463 (463)
12 KOG0557 Dihydrolipoamide acety 100.0 4.8E-83 1E-87 653.2 34.3 409 87-510 36-470 (470)
13 PRK11855 dihydrolipoamide acet 100.0 1.9E-81 4.2E-86 685.0 44.6 416 89-510 119-547 (547)
14 PRK11856 branched-chain alpha- 100.0 2.6E-80 5.7E-85 656.2 45.1 398 90-511 3-411 (411)
15 PTZ00144 dihydrolipoamide succ 100.0 1.3E-79 2.9E-84 641.6 38.6 375 87-512 42-418 (418)
16 KOG0559 Dihydrolipoamide succi 100.0 1E-73 2.2E-78 563.4 24.4 385 87-512 70-457 (457)
17 PRK11857 dihydrolipoamide acet 100.0 3.8E-71 8.2E-76 560.2 30.5 302 202-510 2-305 (306)
18 PRK14843 dihydrolipoamide acet 100.0 2.3E-71 5.1E-76 570.7 29.2 298 201-510 48-347 (347)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 8.9E-60 1.9E-64 461.4 22.1 228 281-510 3-231 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 3.6E-49 7.8E-54 430.9 23.1 223 281-503 114-349 (1228)
21 PRK13757 chloramphenicol acety 99.9 4.8E-26 1E-30 220.3 21.3 180 305-504 31-214 (219)
22 PF00302 CAT: Chloramphenicol 99.9 6.2E-26 1.3E-30 218.2 20.4 179 302-499 23-206 (206)
23 COG4845 Chloramphenicol O-acet 99.9 6.6E-21 1.4E-25 177.0 17.8 189 300-508 24-217 (219)
24 PRK14875 acetoin dehydrogenase 99.7 6.5E-18 1.4E-22 175.5 11.5 119 90-236 3-121 (371)
25 PF00364 Biotin_lipoyl: Biotin 99.7 6.8E-18 1.5E-22 136.6 8.4 73 91-163 2-74 (74)
26 PRK06748 hypothetical protein; 99.6 1E-15 2.2E-20 125.5 9.5 64 102-165 11-75 (83)
27 PRK11892 pyruvate dehydrogenas 99.5 4.3E-14 9.4E-19 151.4 12.6 79 90-168 3-82 (464)
28 PRK05889 putative acetyl-CoA c 99.5 5.1E-14 1.1E-18 113.0 9.1 63 102-164 9-71 (71)
29 cd06663 Biotinyl_lipoyl_domain 99.5 2.8E-13 6E-18 109.0 9.4 72 92-163 2-73 (73)
30 COG0511 AccB Biotin carboxyl c 99.5 1.4E-13 3.1E-18 124.8 8.0 63 102-164 77-139 (140)
31 PRK08225 acetyl-CoA carboxylas 99.4 7.1E-13 1.5E-17 106.0 9.0 63 102-164 8-70 (70)
32 PRK11854 aceF pyruvate dehydro 99.4 7.7E-13 1.7E-17 147.6 11.0 75 90-166 3-77 (633)
33 TIGR02927 SucB_Actino 2-oxoglu 99.4 1.1E-12 2.5E-17 144.8 10.6 77 90-166 3-79 (590)
34 PF02817 E3_binding: e3 bindin 99.4 6.6E-13 1.4E-17 93.3 4.1 38 201-238 2-39 (39)
35 PRK06549 acetyl-CoA carboxylas 99.3 7.9E-12 1.7E-16 111.4 9.1 62 102-163 68-129 (130)
36 PRK11855 dihydrolipoamide acet 99.3 9.5E-12 2.1E-16 136.9 11.7 78 90-168 3-80 (547)
37 PRK05641 putative acetyl-CoA c 99.3 1.8E-11 3.8E-16 112.4 8.8 62 102-163 91-152 (153)
38 TIGR01348 PDHac_trf_long pyruv 99.2 2.1E-11 4.6E-16 133.7 10.6 75 91-166 2-76 (546)
39 PRK07051 hypothetical protein; 99.2 4.4E-11 9.6E-16 98.2 8.4 69 90-164 4-79 (80)
40 PLN02983 biotin carboxyl carri 99.2 3.4E-11 7.4E-16 117.6 8.3 56 109-164 218-273 (274)
41 cd06850 biotinyl_domain The bi 99.2 7.8E-11 1.7E-15 92.3 8.6 62 102-163 6-67 (67)
42 TIGR00531 BCCP acetyl-CoA carb 99.2 5.8E-11 1.3E-15 109.7 8.3 62 103-164 88-156 (156)
43 PRK06302 acetyl-CoA carboxylas 99.1 1.6E-10 3.4E-15 106.7 8.3 62 103-164 87-155 (155)
44 cd06849 lipoyl_domain Lipoyl d 99.1 5.3E-10 1.1E-14 87.6 10.1 73 91-163 2-74 (74)
45 PRK14042 pyruvate carboxylase 99.1 2.9E-10 6.3E-15 125.0 9.3 64 102-165 532-595 (596)
46 TIGR02712 urea_carbox urea car 99.0 1.1E-09 2.4E-14 129.8 9.0 63 102-164 1139-1201(1201)
47 TIGR01108 oadA oxaloacetate de 98.9 2.1E-09 4.6E-14 118.5 7.4 59 102-160 524-582 (582)
48 PRK14040 oxaloacetate decarbox 98.9 3.9E-09 8.5E-14 116.6 9.0 62 102-163 531-592 (593)
49 TIGR01235 pyruv_carbox pyruvat 98.9 4.6E-09 1E-13 123.5 8.5 63 102-164 1081-1143(1143)
50 PRK09282 pyruvate carboxylase 98.8 1.4E-08 3E-13 112.4 9.1 63 102-164 529-591 (592)
51 COG4770 Acetyl/propionyl-CoA c 98.7 2.2E-08 4.8E-13 106.5 7.4 63 102-164 582-644 (645)
52 PRK12999 pyruvate carboxylase; 98.7 4.5E-08 9.8E-13 115.7 9.1 62 103-164 1084-1145(1146)
53 COG1038 PycA Pyruvate carboxyl 98.5 1.6E-07 3.5E-12 103.0 6.0 62 103-164 1087-1148(1149)
54 KOG0369 Pyruvate carboxylase [ 98.3 1E-06 2.2E-11 95.0 6.1 63 102-164 1113-1175(1176)
55 cd06848 GCS_H Glycine cleavage 98.1 3.6E-06 7.8E-11 71.5 5.4 64 89-153 15-79 (96)
56 KOG0238 3-Methylcrotonyl-CoA c 98.0 4.9E-06 1.1E-10 87.8 4.4 62 103-164 609-670 (670)
57 KOG0368 Acetyl-CoA carboxylase 97.9 1.7E-05 3.6E-10 92.0 5.9 66 101-167 691-756 (2196)
58 TIGR03077 not_gcvH glycine cle 97.8 3.1E-05 6.8E-10 67.3 5.5 47 104-150 30-77 (110)
59 PRK09783 copper/silver efflux 97.7 0.00011 2.4E-09 78.5 9.5 67 102-168 130-245 (409)
60 PRK00624 glycine cleavage syst 97.7 5.2E-05 1.1E-09 66.3 5.7 57 90-147 19-76 (114)
61 TIGR00998 8a0101 efflux pump m 97.7 9.3E-05 2E-09 76.5 8.1 36 133-168 205-240 (334)
62 PRK13380 glycine cleavage syst 97.6 6.5E-05 1.4E-09 68.5 5.0 61 89-150 30-91 (144)
63 PRK10559 p-hydroxybenzoic acid 97.6 0.00017 3.6E-09 74.2 8.4 65 102-166 54-188 (310)
64 TIGR01730 RND_mfp RND family e 97.6 0.00013 2.9E-09 74.5 6.8 65 102-166 33-168 (322)
65 PRK14843 dihydrolipoamide acet 97.5 6.2E-05 1.4E-09 78.4 4.0 41 202-242 6-46 (347)
66 PRK10476 multidrug resistance 97.5 0.00019 4E-09 74.9 7.6 34 134-167 210-243 (346)
67 PRK01202 glycine cleavage syst 97.5 0.00019 4.2E-09 64.1 6.6 63 104-166 37-107 (127)
68 PRK15136 multidrug efflux syst 97.4 0.00042 9E-09 73.6 8.0 36 133-168 216-251 (390)
69 PRK09578 periplasmic multidrug 97.3 0.00043 9.4E-09 73.3 7.3 70 96-166 65-207 (385)
70 PRK03598 putative efflux pump 97.3 0.00043 9.4E-09 71.7 6.6 34 133-166 204-237 (331)
71 PRK15030 multidrug efflux syst 97.3 0.00046 1E-08 73.4 6.6 65 102-166 72-209 (397)
72 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00036 7.9E-09 51.9 4.0 34 133-166 3-36 (50)
73 PRK09859 multidrug efflux syst 97.2 0.0008 1.7E-08 71.3 7.7 65 102-166 68-205 (385)
74 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00042 9.2E-09 51.6 3.5 30 102-131 9-38 (50)
75 TIGR00527 gcvH glycine cleavag 97.1 0.00052 1.1E-08 61.4 4.4 46 104-149 36-82 (127)
76 PRK11556 multidrug efflux syst 97.1 0.0012 2.6E-08 70.7 7.1 64 102-165 94-230 (415)
77 PRK11578 macrolide transporter 97.0 0.0017 3.7E-08 68.3 7.6 65 102-166 68-220 (370)
78 PRK12784 hypothetical protein; 96.8 0.0063 1.4E-07 48.7 7.4 65 102-166 12-77 (84)
79 PF01597 GCV_H: Glycine cleava 96.8 0.0022 4.8E-08 56.9 5.2 44 104-147 31-75 (122)
80 PF12700 HlyD_2: HlyD family s 96.7 0.0012 2.5E-08 67.7 3.6 64 102-166 28-193 (328)
81 TIGR02971 heterocyst_DevB ABC 96.7 0.0031 6.8E-08 65.0 6.9 33 134-167 206-238 (327)
82 TIGR03309 matur_yqeB selenium- 96.6 0.006 1.3E-07 60.4 7.2 59 103-167 172-230 (256)
83 PRK05889 putative acetyl-CoA c 96.5 0.0054 1.2E-07 48.9 5.0 36 133-168 3-38 (71)
84 COG0509 GcvH Glycine cleavage 96.3 0.0045 9.7E-08 55.1 3.9 58 89-147 25-83 (131)
85 PRK06748 hypothetical protein; 95.9 0.013 2.8E-07 48.4 4.5 32 134-165 6-37 (83)
86 TIGR01843 type_I_hlyD type I s 95.7 0.031 6.7E-07 59.3 8.1 32 135-166 274-306 (423)
87 TIGR00999 8a0102 Membrane Fusi 95.6 0.019 4.1E-07 57.1 5.5 32 135-166 91-122 (265)
88 PRK08225 acetyl-CoA carboxylas 95.1 0.041 8.8E-07 43.6 5.0 35 134-168 3-37 (70)
89 cd06850 biotinyl_domain The bi 95.0 0.037 7.9E-07 42.6 4.3 32 135-166 2-33 (67)
90 cd06253 M14_ASTE_ASPA_like_3 A 94.9 0.074 1.6E-06 54.5 7.5 59 103-163 236-297 (298)
91 PF13375 RnfC_N: RnfC Barrel s 94.9 0.041 8.9E-07 47.2 4.7 44 103-147 38-81 (101)
92 COG0511 AccB Biotin carboxyl c 94.7 0.04 8.7E-07 50.1 4.5 37 131-167 69-105 (140)
93 COG1566 EmrA Multidrug resista 94.6 0.079 1.7E-06 55.4 6.9 34 135-168 211-244 (352)
94 cd06251 M14_ASTE_ASPA_like_1 A 94.6 0.11 2.3E-06 53.0 7.7 58 104-163 227-286 (287)
95 cd06252 M14_ASTE_ASPA_like_2 A 94.3 0.15 3.2E-06 52.7 8.0 60 103-164 251-314 (316)
96 cd06250 M14_PaAOTO_like An unc 94.3 0.12 2.6E-06 54.4 7.4 60 102-163 295-358 (359)
97 TIGR02994 ectoine_eutE ectoine 93.8 0.17 3.8E-06 52.4 7.4 59 103-163 262-324 (325)
98 PRK06549 acetyl-CoA carboxylas 93.7 0.11 2.4E-06 46.6 5.0 37 131-167 60-96 (130)
99 PF13437 HlyD_3: HlyD family s 93.6 0.1 2.2E-06 44.3 4.6 32 135-166 2-33 (105)
100 COG3608 Predicted deacylase [G 93.6 0.14 3.1E-06 52.8 6.2 46 102-147 262-310 (331)
101 PRK07051 hypothetical protein; 93.3 0.11 2.4E-06 42.4 4.1 27 101-127 53-79 (80)
102 PF05896 NQRA: Na(+)-transloca 93.0 0.18 4E-06 50.2 5.7 48 103-151 37-84 (257)
103 PF00364 Biotin_lipoyl: Biotin 93.0 0.13 2.9E-06 41.2 4.0 35 134-168 2-42 (74)
104 TIGR01235 pyruv_carbox pyruvat 93.0 0.3 6.5E-06 58.7 8.5 81 87-168 1020-1110(1143)
105 PRK05641 putative acetyl-CoA c 92.9 0.16 3.5E-06 46.8 4.8 36 132-167 84-119 (153)
106 PF00529 HlyD: HlyD family sec 92.6 0.087 1.9E-06 53.2 3.0 34 133-166 2-35 (305)
107 PRK10476 multidrug resistance 92.6 0.15 3.2E-06 53.2 4.7 35 132-166 48-82 (346)
108 PF09891 DUF2118: Uncharacteri 92.6 0.18 3.8E-06 46.3 4.6 46 102-147 87-133 (150)
109 TIGR02971 heterocyst_DevB ABC 92.6 0.17 3.7E-06 52.2 5.1 42 125-166 6-50 (327)
110 cd06254 M14_ASTE_ASPA_like_4 A 92.4 0.25 5.5E-06 50.3 6.1 56 103-160 230-287 (288)
111 TIGR00998 8a0101 efflux pump m 92.0 0.16 3.4E-06 52.4 4.1 35 132-166 42-76 (334)
112 PRK11556 multidrug efflux syst 91.8 0.22 4.9E-06 53.3 5.1 58 108-166 64-121 (415)
113 PF07247 AATase: Alcohol acety 91.6 3.3 7.2E-05 44.9 14.0 68 424-502 403-480 (480)
114 PRK09859 multidrug efflux syst 91.3 0.29 6.4E-06 51.8 5.2 56 110-166 40-95 (385)
115 PF12700 HlyD_2: HlyD family s 90.9 0.23 5E-06 50.7 3.9 42 122-166 13-54 (328)
116 TIGR01000 bacteriocin_acc bact 90.9 0.33 7.2E-06 52.7 5.3 37 131-167 58-94 (457)
117 PRK11578 macrolide transporter 90.8 0.41 8.8E-06 50.4 5.7 60 106-166 36-95 (370)
118 TIGR02946 acyl_WS_DGAT acyltra 90.6 5.8 0.00013 42.5 14.5 166 308-505 231-442 (446)
119 PF00529 HlyD: HlyD family sec 90.6 0.19 4.1E-06 50.8 2.9 33 101-133 7-39 (305)
120 TIGR01936 nqrA NADH:ubiquinone 90.3 0.29 6.3E-06 52.9 4.1 45 103-148 37-81 (447)
121 TIGR01843 type_I_hlyD type I s 90.2 0.42 9.1E-06 50.7 5.3 43 125-167 36-78 (423)
122 TIGR03794 NHPM_micro_HlyD NHPM 90.2 0.39 8.5E-06 51.5 5.1 36 131-166 57-92 (421)
123 PRK09578 periplasmic multidrug 90.1 0.43 9.4E-06 50.5 5.3 56 110-166 42-97 (385)
124 TIGR01730 RND_mfp RND family e 90.0 0.4 8.7E-06 48.8 4.8 35 132-166 26-60 (322)
125 PRK10559 p-hydroxybenzoic acid 89.7 0.32 7E-06 50.1 3.8 34 133-166 48-81 (310)
126 PRK15136 multidrug efflux syst 89.6 0.33 7.1E-06 51.7 3.8 35 132-166 61-95 (390)
127 PF07831 PYNP_C: Pyrimidine nu 89.3 0.34 7.3E-06 39.3 2.8 30 101-130 28-57 (75)
128 COG1726 NqrA Na+-transporting 88.7 0.51 1.1E-05 48.7 4.2 44 108-152 42-85 (447)
129 PRK03598 putative efflux pump 88.7 0.48 1E-05 49.0 4.2 35 132-166 43-77 (331)
130 PRK14042 pyruvate carboxylase 88.7 1.5 3.2E-05 49.2 8.2 36 133-168 526-561 (596)
131 PRK05352 Na(+)-translocating N 88.1 0.52 1.1E-05 51.0 4.2 45 103-148 38-82 (448)
132 PF13437 HlyD_3: HlyD family s 88.0 0.89 1.9E-05 38.5 4.7 27 102-128 6-32 (105)
133 PRK09783 copper/silver efflux 87.1 1.1 2.3E-05 48.1 5.8 57 110-166 100-158 (409)
134 PRK15030 multidrug efflux syst 87.0 0.62 1.3E-05 49.6 3.9 43 123-166 57-99 (397)
135 PF00668 Condensation: Condens 86.9 6.2 0.00014 38.7 10.9 33 474-506 128-160 (301)
136 TIGR00531 BCCP acetyl-CoA carb 86.7 0.67 1.4E-05 43.0 3.5 28 100-127 129-156 (156)
137 cd00210 PTS_IIA_glc PTS_IIA, P 86.5 2.3 4.9E-05 37.9 6.6 21 145-165 83-103 (124)
138 KOG3373 Glycine cleavage syste 86.4 0.58 1.3E-05 43.1 2.8 45 104-149 82-126 (172)
139 TIGR01945 rnfC electron transp 86.3 0.73 1.6E-05 49.8 4.1 55 87-147 28-82 (435)
140 PLN02983 biotin carboxyl carri 86.2 0.87 1.9E-05 45.5 4.1 36 133-168 198-240 (274)
141 cd06255 M14_ASTE_ASPA_like_5 A 86.2 2.2 4.8E-05 43.5 7.3 43 104-146 239-283 (293)
142 PLN02226 2-oxoglutarate dehydr 86.1 0.82 1.8E-05 49.6 4.2 29 101-129 140-168 (463)
143 PRK06302 acetyl-CoA carboxylas 85.9 0.84 1.8E-05 42.2 3.7 27 101-127 129-155 (155)
144 PRK09439 PTS system glucose-sp 85.4 1.9 4.2E-05 40.4 5.9 21 146-166 106-126 (169)
145 PF00358 PTS_EIIA_1: phosphoen 85.3 1.8 3.9E-05 39.0 5.4 20 146-165 88-107 (132)
146 PRK05035 electron transport co 85.3 2.5 5.3E-05 48.4 7.7 56 86-147 33-88 (695)
147 KOG0559 Dihydrolipoamide succi 85.2 2.3 5E-05 44.1 6.7 28 102-129 122-149 (457)
148 TIGR03794 NHPM_micro_HlyD NHPM 84.5 0.95 2.1E-05 48.5 3.9 31 102-132 65-95 (421)
149 TIGR01108 oadA oxaloacetate de 83.8 1.3 2.8E-05 49.7 4.6 37 133-169 518-554 (582)
150 PRK14040 oxaloacetate decarbox 83.7 2.4 5.3E-05 47.6 6.7 37 132-168 524-560 (593)
151 TIGR00830 PTBA PTS system, glu 83.6 2.8 6E-05 37.2 5.7 23 143-165 81-103 (121)
152 PF04952 AstE_AspA: Succinylgl 83.4 3 6.5E-05 42.2 6.8 60 103-164 227-290 (292)
153 COG0845 AcrA Membrane-fusion p 83.4 2.4 5.2E-05 43.0 6.2 47 119-166 54-100 (372)
154 TIGR01000 bacteriocin_acc bact 83.4 1.1 2.3E-05 48.7 3.7 32 101-132 65-96 (457)
155 TIGR00164 PS_decarb_rel phosph 83.4 2.6 5.7E-05 40.2 6.0 53 104-161 130-182 (189)
156 PF02749 QRPTase_N: Quinolinat 83.3 1.1 2.3E-05 37.3 2.8 24 104-127 44-67 (88)
157 PRK09282 pyruvate carboxylase 82.7 3.5 7.6E-05 46.4 7.4 37 132-168 522-558 (592)
158 COG2190 NagE Phosphotransferas 82.6 2.6 5.7E-05 38.9 5.3 26 141-166 86-111 (156)
159 COG4072 Uncharacterized protei 82.0 2.8 6.1E-05 37.5 5.1 45 102-146 98-143 (161)
160 PRK05305 phosphatidylserine de 81.7 3.2 6.9E-05 40.2 5.9 53 103-160 149-201 (206)
161 COG2190 NagE Phosphotransferas 81.5 2.2 4.8E-05 39.4 4.4 61 103-163 85-153 (156)
162 COG0508 AceF Pyruvate/2-oxoglu 80.6 1.6 3.5E-05 46.7 3.8 32 138-169 14-45 (404)
163 COG4770 Acetyl/propionyl-CoA c 79.4 2.2 4.8E-05 46.9 4.2 34 133-166 576-609 (645)
164 COG4656 RnfC Predicted NADH:ub 79.1 1.6 3.5E-05 47.5 3.1 39 107-147 45-83 (529)
165 PRK14875 acetoin dehydrogenase 78.9 2.5 5.4E-05 43.6 4.5 29 102-130 52-80 (371)
166 TIGR02712 urea_carbox urea car 78.5 2.3 5E-05 51.7 4.5 38 131-168 1131-1168(1201)
167 COG1566 EmrA Multidrug resista 78.1 2.2 4.8E-05 44.7 3.7 35 133-167 54-88 (352)
168 PF02666 PS_Dcarbxylase: Phosp 78.1 4.1 8.8E-05 39.2 5.3 67 93-162 135-202 (202)
169 PTZ00144 dihydrolipoamide succ 77.7 2.6 5.6E-05 45.3 4.2 29 101-129 93-121 (418)
170 TIGR01347 sucB 2-oxoglutarate 77.3 2.9 6.3E-05 44.8 4.4 30 100-129 48-77 (403)
171 cd00210 PTS_IIA_glc PTS_IIA, P 77.1 2.1 4.6E-05 38.1 2.8 27 103-129 78-104 (124)
172 COG0845 AcrA Membrane-fusion p 77.0 2.2 4.9E-05 43.3 3.4 27 102-128 73-99 (372)
173 cd06663 Biotinyl_lipoyl_domain 77.0 3 6.5E-05 32.8 3.4 25 102-126 49-73 (73)
174 TIGR00830 PTBA PTS system, glu 76.9 2.1 4.5E-05 38.0 2.7 27 103-129 78-104 (121)
175 PRK05704 dihydrolipoamide succ 76.1 3.2 7E-05 44.5 4.4 31 100-130 50-80 (407)
176 cd06849 lipoyl_domain Lipoyl d 75.8 3.2 7E-05 31.3 3.3 25 102-126 50-74 (74)
177 PRK12784 hypothetical protein; 75.3 4.7 0.0001 32.6 4.0 36 134-169 7-42 (84)
178 PRK12999 pyruvate carboxylase; 74.9 8.6 0.00019 46.7 8.0 37 132-168 1076-1112(1146)
179 PLN02528 2-oxoisovalerate dehy 74.9 3.7 8.1E-05 44.1 4.5 32 99-130 45-76 (416)
180 PRK09439 PTS system glucose-sp 74.1 4.6 0.0001 37.9 4.4 28 103-130 100-127 (169)
181 TIGR01995 PTS-II-ABC-beta PTS 73.3 3.4 7.3E-05 46.7 3.8 28 103-130 542-569 (610)
182 PF00358 PTS_EIIA_1: phosphoen 71.5 2.6 5.7E-05 37.9 2.0 28 103-130 82-109 (132)
183 PRK10255 PTS system N-acetyl g 70.1 9.4 0.0002 43.3 6.4 60 103-166 506-604 (648)
184 PRK14844 bifunctional DNA-dire 69.0 7.8 0.00017 49.9 5.8 34 108-143 2423-2456(2836)
185 TIGR01349 PDHac_trf_mito pyruv 68.8 6.2 0.00014 42.7 4.5 30 101-130 48-78 (435)
186 PRK09824 PTS system beta-gluco 68.7 9.8 0.00021 43.1 6.2 61 102-166 485-584 (627)
187 TIGR01995 PTS-II-ABC-beta PTS 67.3 12 0.00026 42.3 6.6 61 102-166 469-568 (610)
188 TIGR03309 matur_yqeB selenium- 66.8 11 0.00024 37.7 5.4 32 133-165 165-196 (256)
189 PRK09824 PTS system beta-gluco 65.7 6 0.00013 44.8 3.7 28 103-130 558-585 (627)
190 PRK03934 phosphatidylserine de 65.4 14 0.00031 37.2 6.0 55 105-163 211-265 (265)
191 PRK11892 pyruvate dehydrogenas 63.4 9.2 0.0002 41.7 4.6 31 100-130 50-81 (464)
192 PRK10255 PTS system N-acetyl g 61.6 8.6 0.00019 43.6 4.0 29 103-131 578-606 (648)
193 KOG0369 Pyruvate carboxylase [ 61.2 6.5 0.00014 44.1 2.9 32 135-166 1109-1140(1176)
194 COG1038 PycA Pyruvate carboxyl 60.6 18 0.0004 41.6 6.2 32 135-166 1082-1113(1149)
195 PLN02663 hydroxycinnamoyl-CoA: 59.2 13 0.00028 39.9 4.8 30 475-504 145-174 (431)
196 TIGR02645 ARCH_P_rylase putati 58.7 14 0.0003 40.5 4.9 43 124-166 405-471 (493)
197 COG0157 NadC Nicotinate-nucleo 58.1 9.8 0.00021 38.5 3.3 23 105-127 64-86 (280)
198 PRK03140 phosphatidylserine de 57.9 13 0.00028 37.4 4.2 57 103-162 201-257 (259)
199 PRK09294 acyltransferase PapA5 57.7 2.3E+02 0.005 29.9 14.0 34 311-353 211-247 (416)
200 PLN02744 dihydrolipoyllysine-r 57.1 11 0.00024 41.8 3.9 30 100-129 160-190 (539)
201 PF06898 YqfD: Putative stage 56.8 17 0.00038 38.6 5.2 54 102-162 166-226 (385)
202 cd01134 V_A-ATPase_A V/A-type 56.5 27 0.00059 36.8 6.4 55 110-166 54-111 (369)
203 PLN00140 alcohol acetyltransfe 55.8 16 0.00034 39.5 4.7 30 475-504 148-177 (444)
204 PRK10252 entF enterobactin syn 55.5 89 0.0019 38.2 11.7 29 475-503 133-161 (1296)
205 COG4072 Uncharacterized protei 55.4 23 0.0005 31.9 4.7 42 117-169 87-128 (161)
206 PLN02481 Omega-hydroxypalmitat 55.4 16 0.00035 39.3 4.8 30 475-504 158-187 (436)
207 PRK11856 branched-chain alpha- 55.1 16 0.00034 39.1 4.6 31 101-131 51-81 (411)
208 PF02458 Transferase: Transfer 54.3 16 0.00034 38.8 4.5 31 475-505 147-177 (432)
209 KOG0368 Acetyl-CoA carboxylase 52.9 19 0.00041 44.1 4.9 80 87-166 633-719 (2196)
210 TIGR00163 PS_decarb phosphatid 52.3 16 0.00034 36.2 3.7 48 114-162 189-236 (238)
211 cd06910 M14_ASTE_ASPA_like_7 A 52.1 19 0.00041 36.3 4.4 45 111-162 226-271 (272)
212 PLN03157 spermidine hydroxycin 51.6 21 0.00045 38.6 4.8 30 475-504 146-175 (447)
213 cd06255 M14_ASTE_ASPA_like_5 A 50.2 25 0.00053 35.9 4.9 36 132-168 231-266 (293)
214 PRK08072 nicotinate-nucleotide 50.1 16 0.00035 37.1 3.5 22 106-127 65-86 (277)
215 cd01572 QPRTase Quinolinate ph 49.5 18 0.00039 36.5 3.7 25 103-127 56-80 (268)
216 COG3608 Predicted deacylase [G 49.2 29 0.00062 36.1 5.1 40 124-166 250-289 (331)
217 KOG0557 Dihydrolipoamide acety 48.8 14 0.00031 39.7 2.9 31 138-168 50-80 (470)
218 PRK04350 thymidine phosphoryla 48.7 26 0.00056 38.4 4.9 42 125-166 398-463 (490)
219 PRK05820 deoA thymidine phosph 48.6 14 0.00031 39.9 2.9 30 99-128 375-404 (440)
220 cd06253 M14_ASTE_ASPA_like_3 A 48.0 22 0.00049 36.3 4.2 34 132-166 229-262 (298)
221 KOG0238 3-Methylcrotonyl-CoA c 47.8 14 0.0003 40.3 2.7 32 135-166 604-635 (670)
222 cd06251 M14_ASTE_ASPA_like_1 A 47.6 36 0.00078 34.6 5.6 36 132-168 219-254 (287)
223 TIGR00999 8a0102 Membrane Fusi 47.6 18 0.00039 35.6 3.4 26 102-127 95-120 (265)
224 PF05896 NQRA: Na(+)-transloca 47.5 13 0.00029 37.2 2.3 30 135-164 32-61 (257)
225 PRK06543 nicotinate-nucleotide 46.4 20 0.00044 36.4 3.5 23 105-127 65-87 (281)
226 cd06250 M14_PaAOTO_like An unc 46.3 31 0.00067 36.4 5.0 35 133-168 290-324 (359)
227 PF13375 RnfC_N: RnfC Barrel s 46.2 28 0.0006 29.8 3.8 50 115-165 13-63 (101)
228 TIGR02643 T_phosphoryl thymidi 46.0 17 0.00037 39.2 3.0 27 101-127 376-402 (437)
229 PRK06096 molybdenum transport 45.9 21 0.00045 36.5 3.5 23 105-127 61-83 (284)
230 TIGR02876 spore_yqfD sporulati 45.8 42 0.0009 35.7 5.9 55 102-162 162-223 (382)
231 PF01551 Peptidase_M23: Peptid 45.4 20 0.00044 29.6 2.9 27 103-129 49-75 (96)
232 cd06252 M14_ASTE_ASPA_like_2 A 45.3 38 0.00082 34.9 5.4 36 130-166 242-277 (316)
233 PRK05742 nicotinate-nucleotide 45.1 22 0.00047 36.2 3.5 22 106-127 67-88 (277)
234 PRK00044 psd phosphatidylserin 45.0 25 0.00054 35.9 4.0 58 105-164 224-286 (288)
235 cd06254 M14_ASTE_ASPA_like_4 A 44.9 28 0.0006 35.4 4.3 37 130-167 221-257 (288)
236 PF07831 PYNP_C: Pyrimidine nu 44.7 29 0.00063 28.0 3.5 29 138-168 30-58 (75)
237 cd01573 modD_like ModD; Quinol 44.4 23 0.00049 35.9 3.5 23 105-127 56-78 (272)
238 TIGR02644 Y_phosphoryl pyrimid 44.3 18 0.00039 38.8 2.8 29 101-129 370-398 (405)
239 PF09891 DUF2118: Uncharacteri 44.0 25 0.00055 32.3 3.4 45 114-169 73-117 (150)
240 PRK07428 nicotinate-nucleotide 43.8 23 0.00051 36.1 3.5 23 105-127 72-94 (288)
241 TIGR03327 AMP_phos AMP phospho 43.6 32 0.0007 37.8 4.7 41 126-166 408-472 (500)
242 cd01568 QPRTase_NadC Quinolina 43.3 24 0.00052 35.6 3.5 24 104-127 56-79 (269)
243 PRK07896 nicotinate-nucleotide 43.3 24 0.00052 36.1 3.5 23 105-127 76-98 (289)
244 PRK09016 quinolinate phosphori 43.3 24 0.00052 36.2 3.5 22 106-127 86-107 (296)
245 TIGR02645 ARCH_P_rylase putati 43.2 21 0.00046 39.1 3.3 32 97-128 439-470 (493)
246 PRK06978 nicotinate-nucleotide 43.1 25 0.00053 36.1 3.5 23 105-127 82-104 (294)
247 PF07247 AATase: Alcohol acety 43.0 24 0.00053 38.2 3.7 33 474-506 140-172 (480)
248 PLN02716 nicotinate-nucleotide 42.7 25 0.00053 36.3 3.5 23 105-127 78-100 (308)
249 PRK05848 nicotinate-nucleotide 42.5 25 0.00055 35.6 3.5 23 105-127 58-80 (273)
250 PRK04350 thymidine phosphoryla 42.5 23 0.00049 38.9 3.3 32 97-128 431-462 (490)
251 TIGR01042 V-ATPase_V1_A V-type 42.5 52 0.0011 36.9 6.1 54 110-165 123-179 (591)
252 PRK06106 nicotinate-nucleotide 42.0 26 0.00056 35.7 3.5 24 104-127 69-92 (281)
253 TIGR02644 Y_phosphoryl pyrimid 42.0 37 0.0008 36.4 4.8 41 126-166 327-398 (405)
254 TIGR03327 AMP_phos AMP phospho 42.0 23 0.00049 38.9 3.2 32 97-128 440-471 (500)
255 TIGR02994 ectoine_eutE ectoine 41.8 32 0.0007 35.7 4.2 34 131-165 254-287 (325)
256 TIGR02643 T_phosphoryl thymidi 41.7 36 0.00077 36.9 4.6 39 128-166 335-404 (437)
257 PRK04192 V-type ATP synthase s 41.6 55 0.0012 36.8 6.2 129 110-241 123-277 (586)
258 PF01551 Peptidase_M23: Peptid 41.0 88 0.0019 25.7 6.1 57 101-166 19-75 (96)
259 PRK02597 rpoC2 DNA-directed RN 40.6 59 0.0013 40.0 6.6 35 109-143 405-446 (1331)
260 PRK06078 pyrimidine-nucleoside 40.2 24 0.00052 38.2 3.0 30 101-130 372-401 (434)
261 PRK05820 deoA thymidine phosph 39.8 43 0.00093 36.3 4.9 39 128-166 336-405 (440)
262 PTZ00403 phosphatidylserine de 39.7 32 0.0007 36.2 3.8 60 103-165 280-340 (353)
263 TIGR00078 nadC nicotinate-nucl 39.4 30 0.00065 34.9 3.5 21 107-127 56-76 (265)
264 PRK08385 nicotinate-nucleotide 39.3 30 0.00065 35.2 3.5 23 105-127 58-80 (278)
265 PRK12467 peptide synthase; Pro 39.1 4.3E+02 0.0094 37.0 15.1 27 477-503 177-203 (3956)
266 TIGR01334 modD putative molybd 38.4 32 0.00069 35.0 3.5 23 105-127 60-82 (277)
267 PRK06078 pyrimidine-nucleoside 37.5 43 0.00093 36.2 4.5 40 126-165 329-399 (434)
268 PF06898 YqfD: Putative stage 35.8 43 0.00092 35.7 4.1 24 102-125 196-226 (385)
269 COG1155 NtpA Archaeal/vacuolar 35.8 90 0.002 34.5 6.5 57 111-168 122-180 (588)
270 TIGR01043 ATP_syn_A_arch ATP s 33.8 79 0.0017 35.5 5.9 54 111-166 121-177 (578)
271 PF03869 Arc: Arc-like DNA bin 33.7 1.2E+02 0.0026 22.4 5.0 47 303-357 3-49 (50)
272 TIGR00164 PS_decarb_rel phosph 32.9 1.5E+02 0.0033 28.2 7.0 63 103-166 80-154 (189)
273 CHL00117 rpoC2 RNA polymerase 31.2 50 0.0011 40.8 4.0 36 108-143 405-448 (1364)
274 PRK14698 V-type ATP synthase s 30.8 93 0.002 37.5 6.1 68 92-167 107-181 (1017)
275 COG0213 DeoA Thymidine phospho 28.9 47 0.001 35.6 3.0 27 102-128 374-400 (435)
276 PRK10871 nlpD lipoprotein NlpD 28.6 33 0.00072 35.6 1.8 18 110-127 273-290 (319)
277 PRK05691 peptide synthase; Val 28.4 9.7E+02 0.021 34.1 15.9 28 476-503 802-829 (4334)
278 PF01333 Apocytochr_F_C: Apocy 28.3 45 0.00098 29.2 2.2 51 102-160 9-60 (118)
279 PRK08662 nicotinate phosphorib 28.0 55 0.0012 34.3 3.3 24 103-128 69-92 (343)
280 TIGR02876 spore_yqfD sporulati 27.5 75 0.0016 33.8 4.3 26 102-127 193-225 (382)
281 PRK06559 nicotinate-nucleotide 27.1 62 0.0013 33.1 3.4 24 104-127 70-95 (290)
282 PRK07188 nicotinate phosphorib 25.6 78 0.0017 33.4 3.9 22 106-127 72-93 (352)
283 PRK12316 peptide synthase; Pro 25.1 9.9E+02 0.021 34.7 15.2 29 476-504 176-204 (5163)
284 COG0213 DeoA Thymidine phospho 24.7 1E+02 0.0022 33.1 4.5 44 125-168 329-403 (435)
285 KOG1668 Elongation factor 1 be 24.1 46 0.00099 32.8 1.7 28 107-134 180-207 (231)
286 PRK10871 nlpD lipoprotein NlpD 23.9 1.7E+02 0.0038 30.3 6.0 24 144-167 270-293 (319)
287 PF02749 QRPTase_N: Quinolinat 23.6 99 0.0022 25.4 3.5 24 142-165 45-68 (88)
288 PRK05691 peptide synthase; Val 23.3 1.1E+03 0.024 33.6 15.0 27 476-502 1855-1881(4334)
289 cd06848 GCS_H Glycine cleavage 23.0 1E+02 0.0023 25.7 3.5 31 138-168 26-57 (96)
290 COG4908 Uncharacterized protei 22.9 7.9E+02 0.017 26.6 10.5 175 314-502 226-433 (439)
291 PRK11637 AmiB activator; Provi 22.8 1.5E+02 0.0033 31.8 5.6 69 89-167 331-402 (428)
292 PRK09603 bifunctional DNA-dire 22.7 1.1E+02 0.0023 40.5 4.9 19 109-127 2616-2634(2890)
293 COG3453 Uncharacterized protei 22.2 79 0.0017 28.1 2.6 36 205-242 47-82 (130)
294 cd00516 PRTase_typeII Phosphor 21.6 91 0.002 31.3 3.4 26 103-128 48-73 (281)
295 PF07687 M20_dimer: Peptidase 21.6 84 0.0018 26.1 2.7 29 477-505 79-107 (111)
296 COG1725 Predicted transcriptio 21.1 31 0.00067 30.8 -0.1 19 205-223 35-53 (125)
297 PRK09603 bifunctional DNA-dire 21.0 1.3E+02 0.0028 39.8 5.1 21 397-417 2831-2851(2890)
298 smart00226 LMWPc Low molecular 20.7 84 0.0018 27.8 2.7 32 203-239 41-72 (140)
299 cd01571 NAPRTase_B Nicotinate 20.5 1E+02 0.0022 31.7 3.5 24 103-128 52-75 (302)
300 TIGR01936 nqrA NADH:ubiquinone 20.2 54 0.0012 35.7 1.5 31 135-165 32-62 (447)
No 1
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=5.2e-96 Score=717.65 Aligned_cols=429 Identities=55% Similarity=0.843 Sum_probs=373.6
Q ss_pred ccccceeccccccCCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC
Q 010300 70 MVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (513)
Q Consensus 70 ~~~r~~~~~~~~~~~~~~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~ 149 (513)
+..|.||++.+..+.....++.|++.|+||||.|+++.+|+|||||.|++.|.||||++||++++|++.|+|+|++|+..
T Consensus 45 ~~~~s~~~~~~~~t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~ 124 (474)
T KOG0558|consen 45 GGSRSWFSNEAMATDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHS 124 (474)
T ss_pred CccccccchhhhhcccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeC
Confidence 67889999998887777779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCC
Q 010300 150 PGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDG 229 (513)
Q Consensus 150 ~g~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~G 229 (513)
.+|...+|++|..++.++.++......+.+.....+ +........++++||+||+||+|+||||+.|.|||++|
T Consensus 125 ~ddia~VGk~Lvd~eve~~~ds~e~s~es~~vs~~~------~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdG 198 (474)
T KOG0558|consen 125 PDDIAKVGKPLVDLEVEDSQDSPEDSDESPAVSLGE------SKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDG 198 (474)
T ss_pred chhhhHhCcceeeeeeccCcCCcccCCccccccCCC------CchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCC
Confidence 999999999999999776543322211111110000 01111223457899999999999999999999999999
Q ss_pred ceeHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCccccccc-CCCCCccccCchhHHHHHHHHHHhccccEEE
Q 010300 230 RVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVK-WYPDDKTVPLRGFQRTMVKTMSMAAKIPHFH 308 (513)
Q Consensus 230 rItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vp~s~~rr~ia~~m~~s~~iP~~~ 308 (513)
||+||||++|+.+....-.++....-... +.+.+..... .-..|+++|++|++|+|.+.|+++.+||||.
T Consensus 199 RvLKeDvL~fl~q~pg~~~~~~~~~~a~~---------~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~ 269 (474)
T KOG0558|consen 199 RVLKEDVLRFLGQVPGFVTDPSPSEHAVI---------PGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFG 269 (474)
T ss_pred cchHHHHHHHhccCCCCccCCCCceeecC---------CCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCccc
Confidence 99999999999764221111111100000 0011111111 2234889999999999999999999999999
Q ss_pred EeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEee
Q 010300 309 YVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVP 388 (513)
Q Consensus 309 ~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~p 388 (513)
++.|||||.|+++|.+++....+.|+|+||++|+|||++.||.+||.+|+.++++..+|+++.++|||+||+|+.||++|
T Consensus 270 y~dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVP 349 (474)
T KOG0558|consen 270 YVDEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVP 349 (474)
T ss_pred cccccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceecc
Confidence 99999999999999999998889999999999999999999999999999999887789999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCc
Q 010300 389 NIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGN 468 (513)
Q Consensus 389 vI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~ 468 (513)
.|+|++.+|+.||++++++|+++.+.|+|+++|+.|||||+||+|.+|+++..|+|++||+||.++|+|.+.|.|++.|+
T Consensus 350 NiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~ 429 (474)
T KOG0558|consen 350 NIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGE 429 (474)
T ss_pred CccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcCC
Q 010300 469 VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 513 (513)
Q Consensus 469 i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~~ 513 (513)
++...+|.|+|++||||+||+..|||.+.||+|||||+.|||+||
T Consensus 430 V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll~lk 474 (474)
T KOG0558|consen 430 VYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQLK 474 (474)
T ss_pred EEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhhccC
Confidence 999999999999999999999999999999999999999999996
No 2
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=2.2e-90 Score=726.80 Aligned_cols=403 Identities=26% Similarity=0.477 Sum_probs=338.7
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.++++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA 82 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCCCC
Q 010300 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP 249 (513)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~~~ 249 (513)
.........+++.... ....++.+. .......+||+||+||+||||||++|+|||++|||+++||++|+.+....+.+
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 83 GAAAAAAAAAAAAAAA-PAQAQAAAA-AEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccCCCCCCCCCCCCC-CCCCCCCcc-CCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 2110000000000000 000000110 11123579999999999999999999999999999999999998431111110
Q ss_pred CCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcCC
Q 010300 250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNN 328 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~~ 328 (513)
+.+. . . ...+. . .....++.+|++++||.|+++|++| +++||||+..++|+|+|+++|+++++.
T Consensus 161 ~~~~------~----~-~~~~~--~--~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~ 225 (407)
T PRK05704 161 PAAA------A----P-AAAPA--P--LGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDA 225 (407)
T ss_pred CCCC------C----C-cCCCc--c--ccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhh
Confidence 0000 0 0 00000 0 0011245689999999999999999 589999999999999999999999865
Q ss_pred CC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHH
Q 010300 329 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR 407 (513)
Q Consensus 329 ~~-~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~ 407 (513)
+. ..|.|+||++||+||+++||++||.||++|+++ ++++++++|||+||++++||++|||++++++|+.||++++++
T Consensus 226 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~ 303 (407)
T PRK05704 226 FEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAE 303 (407)
T ss_pred hHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCC--eEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHH
Confidence 43 347899999999999999999999999999875 799999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 010300 408 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 487 (513)
Q Consensus 408 l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviD 487 (513)
|++++|+|+|+++|+.||||||||+|++|+.+|+||||+||+|||++|++.++|++. ||+++++++|+|||+||||+||
T Consensus 304 l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviD 382 (407)
T PRK05704 304 LAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALSYDHRIID 382 (407)
T ss_pred HHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEEechhhhC
Confidence 999999999999999999999999999999999999999999999999999999995 7899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 488 GATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 488 G~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|+++|+||++|+++||||+.||++|
T Consensus 383 Ga~aa~Fl~~l~~~le~p~~ll~~~ 407 (407)
T PRK05704 383 GKEAVGFLVTIKELLEDPERLLLDL 407 (407)
T ss_pred cHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 9999999999999999999999986
No 3
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=2.7e-90 Score=724.61 Aligned_cols=401 Identities=26% Similarity=0.488 Sum_probs=337.8
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++++|+.+|+|.++++++|+.|++|++|++|+.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999865332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCCCC
Q 010300 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP 249 (513)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~~~ 249 (513)
.+.......++.......+. +..+. ...++..+||+||+||+||||||+.|+|||++|||+++||++|+......+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 158 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASA-AAAPT-AAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAP 158 (403)
T ss_pred cccccccccCCCCCCCCCCC-CCCCc-CccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCC
Confidence 11000000000000000000 00110 11224579999999999999999999999999999999999998431100000
Q ss_pred CCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcCC
Q 010300 250 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNN 328 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~~ 328 (513)
+. +. + .+.+ .. ....++.+||+++||.|+++|++| +++|||++..++|+|+|+++|+++++.
T Consensus 159 ~~-------~~----~-~~~~---~~--~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~ 221 (403)
T TIGR01347 159 AP-------AA----A-AKAP---AN--FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEE 221 (403)
T ss_pred CC-------Cc----c-cCCc---cc--cCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhh
Confidence 00 00 0 0000 00 011245689999999999999999 489999999999999999999999865
Q ss_pred CC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHH
Q 010300 329 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR 407 (513)
Q Consensus 329 ~~-~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~ 407 (513)
+. ..|.++||++||+||+++||++||.||++|+++ ++++++++||||||++++||++|||++++++|+.||++++++
T Consensus 222 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~ 299 (403)
T TIGR01347 222 FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGD--DIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIAD 299 (403)
T ss_pred hHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCC--EEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHH
Confidence 43 348899999999999999999999999999864 799999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 010300 408 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 487 (513)
Q Consensus 408 l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviD 487 (513)
|++++|+|+|+++|++||||||||+|++|+.+|+||||+||+|||++|+++++|++. ||++++|++|+|||+||||+||
T Consensus 300 l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~DHRviD 378 (403)
T TIGR01347 300 LGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSYDHRLID 378 (403)
T ss_pred HHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEecchhhC
Confidence 999999999999999999999999999999999999999999999999999999995 6899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 488 GATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 488 G~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|+++|+||++|+++||||+.||++|
T Consensus 379 Ga~aa~Fl~~l~~~le~p~~ll~~~ 403 (403)
T TIGR01347 379 GKEAVTFLVTIKELLEDPRRLLLDL 403 (403)
T ss_pred hHHHHHHHHHHHHHhcCHHHHHhcC
Confidence 9999999999999999999999986
No 4
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.2e-89 Score=723.62 Aligned_cols=416 Identities=70% Similarity=1.060 Sum_probs=342.3
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCCCC
Q 010300 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP 171 (513)
Q Consensus 92 ~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~~~ 171 (513)
|+||+||++|+||+|++|+|++||.|++||+||++||||+.++++|+.+|+|.++++++|+.|++|++|+.|+.++++..
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999975443211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCCCCCC
Q 010300 172 TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST 251 (513)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~~~~~ 251 (513)
.....+++........+..+... ....++..+||+||+||+||||||+.|+|||++|||+++||++|+........++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 159 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDER-GSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSS 159 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCcc-ccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccccccc
Confidence 10000000000000000000000 11112357999999999999999999999999999999999999853221111110
Q ss_pred cccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHhccccEEEEeeeeechHHHHHHHHhcCCCCC
Q 010300 252 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD 331 (513)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~ 331 (513)
........ ..++...+.........++.+|++++||.|+++|++|+++|||++..+||+|+|+++|+++++....
T Consensus 160 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~r~~~~~~~~~ 234 (416)
T PLN02528 160 AEEATIAE-----QEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD 234 (416)
T ss_pred cccccCCc-----cccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHHHHHHhhhhhh
Confidence 00000000 0000000000000111246789999999999999999999999999999999999999999865555
Q ss_pred CCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHH
Q 010300 332 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQL 411 (513)
Q Consensus 332 ~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ 411 (513)
.|.|+||++||+||+++||++||.||++|++++..+++|+++||||||++++||++|||++++++++.+|++++++++++
T Consensus 235 ~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ 314 (416)
T PLN02528 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHL 314 (416)
T ss_pred cCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999877657999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHH
Q 010300 412 AKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV 491 (513)
Q Consensus 412 ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~a 491 (513)
+|+|+|+++|++||||||||+|++|+.+|+|||||||+|||++|++.++|++.++|++++|++|+|||+||||||||+++
T Consensus 315 ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~a 394 (416)
T PLN02528 315 AAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATV 394 (416)
T ss_pred HHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHH
Confidence 99999999999999999999999999999999999999999999999999997679999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHhhcCC
Q 010300 492 AKFCNEWKQLIENPELLLLQMR 513 (513)
Q Consensus 492 a~Fl~~lk~~Le~P~~lll~~~ 513 (513)
++||++|+++||||+.|||+||
T Consensus 395 a~Fl~~lk~~le~P~~lll~~~ 416 (416)
T PLN02528 395 ARFCNEWKSYVEKPELLMLHMR 416 (416)
T ss_pred HHHHHHHHHHHhCHHHHHhccC
Confidence 9999999999999999999997
No 5
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=4.1e-89 Score=730.99 Aligned_cols=415 Identities=27% Similarity=0.434 Sum_probs=341.6
Q ss_pred ccccceeccccccCCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC
Q 010300 70 MVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (513)
Q Consensus 70 ~~~r~~~~~~~~~~~~~~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~ 149 (513)
.+.+|.|++.+. +...++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++++|+++|+|.+|+++
T Consensus 97 ~~~~~~~~~~~~----~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~ 172 (539)
T PLN02744 97 MQSARGFSSSSD----LPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 172 (539)
T ss_pred cccccccccccc----CCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEec
Confidence 334444555543 2446899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-eeecccEEEEEecCCCCCC-----CC----CCC--CC--CCCCCCCC---CCCCCCCC---C--C-C-CCCCcccC
Q 010300 150 PGN-IVKVGETLLKLVVGDSAVP-----TP----SSD--VL--ESVKPPGS---ENSPDSKL---N--K-D-TVGGVLAT 205 (513)
Q Consensus 150 ~g~-~v~~G~~l~~i~~~~~~~~-----~~----~~~--~~--~~~~~~~~---~~~~~~~~---~--~-~-~~~~~~as 205 (513)
+|+ .|++|++|+++.+++++.+ .+ .+. .+ +++.+... .++....+ . . . ...++.+|
T Consensus 173 eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~AS 252 (539)
T PLN02744 173 DGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFAS 252 (539)
T ss_pred CCCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCC
Confidence 996 7999999999854332211 00 000 00 00000000 00000000 0 0 0 11235799
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccc
Q 010300 206 PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTV 285 (513)
Q Consensus 206 PaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 285 (513)
|+||+||+||||||+.|+|||++|||+++||++|+..... .++. +. +. +.. . .....+++
T Consensus 253 P~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~--~~~~-~~----------~~-~~~-----~-~~~~~~~v 312 (539)
T PLN02744 253 PLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGK--GATA-PP----------ST-DSK-----A-PALDYTDI 312 (539)
T ss_pred chhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhcccc--ccCC-CC----------Cc-ccC-----C-CCCccccc
Confidence 9999999999999999999999999999999999853111 0000 00 00 000 0 00123568
Q ss_pred cCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccC
Q 010300 286 PLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 363 (513)
Q Consensus 286 p~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~~~~~d 363 (513)
|++++||.|+++|++| +++||||++.++|+|+|+++|+++|+..+ ..|.|+||++||+||+++||++||+||++|+++
T Consensus 313 pls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~ 392 (539)
T PLN02744 313 PNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDD 392 (539)
T ss_pred cchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccC
Confidence 9999999999999999 58999999999999999999999986543 347899999999999999999999999999865
Q ss_pred CceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCC-CCCCcccee
Q 010300 364 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIG-AIGGKFGAP 442 (513)
Q Consensus 364 ~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg-~~G~~~~tp 442 (513)
.+++++++||||||++++||++|||+++++++|.||++++++|++++|+|+|+++|++||||||||+| +||+.+|+|
T Consensus 393 --~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftp 470 (539)
T PLN02744 393 --YIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCA 470 (539)
T ss_pred --cEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred ccCCCceeEEEecceEEeeEEc-CCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 443 LLNLPEVAIIAMGRIEKVPRLS-DDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 443 ii~~pq~ail~iG~i~~~p~~~-~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
|||+||+|||++|+++++|++. .+|+++++++|+|||+||||||||+++|+||++|+++||||+.|||
T Consensus 471 IInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 471 IINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred cccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 9999999999999999999884 5789999999999999999999999999999999999999998875
No 6
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1.2e-87 Score=735.98 Aligned_cols=413 Identities=28% Similarity=0.441 Sum_probs=334.5
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|++|+.+++
T Consensus 135 ~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 214 (590)
T TIGR02927 135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGA 214 (590)
T ss_pred ceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred CCCC-----CCCCC------CCCCCCCCC---CCCC--------CC-----CCCC-C-CCCCcccCHHHHHHHHHhCCCC
Q 010300 169 AVPT-----PSSDV------LESVKPPGS---ENSP--------DS-----KLNK-D-TVGGVLATPTVRNLAKLYGINL 219 (513)
Q Consensus 169 ~~~~-----~~~~~------~~~~~~~~~---~~~~--------~~-----~~~~-~-~~~~~~asPaaR~lA~e~gidl 219 (513)
+.+. ....+ .+.+..... .... .. .+.. . ...++++||+||+||+||||||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl 294 (590)
T TIGR02927 215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL 294 (590)
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence 2110 00000 000000000 0000 00 0000 0 1124679999999999999999
Q ss_pred CCccCCCCCCceeHHHHHHHHHhcCCC-CCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHH
Q 010300 220 YDVDATGKDGRVLKEDVLKYAVQKGAA-DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTM 298 (513)
Q Consensus 220 ~~v~GTG~~GrItk~DV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m 298 (513)
++|+|||++|||+|+||++|+...... ..|..+....... . ...+.+.+.+ ......++++||+++||.|+++|
T Consensus 295 ~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~-~~~~~~~~~~pls~~rk~ia~~m 369 (590)
T TIGR02927 295 NSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPA---A-AAAASASPAP-AKAHLRGTTQKANRIREITAKKT 369 (590)
T ss_pred HHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCcc---c-cccccCCCcc-ccccccCceeeccHHHHHHHHHH
Confidence 999999999999999999998532111 1111000000000 0 0000000000 00011245689999999999999
Q ss_pred HHhc-cccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEE
Q 010300 299 SMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIG 376 (513)
Q Consensus 299 ~~s~-~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~ig 376 (513)
++|+ ++||||++.+||+|+|+++|+++|+.+. ..|.|+||++||+||+++||++||.||++|++++++|++|+++|||
T Consensus 370 ~~S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnig 449 (590)
T TIGR02927 370 REALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLG 449 (590)
T ss_pred HHHhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEE
Confidence 9995 7899999999999999999999987543 3478999999999999999999999999998766689999999999
Q ss_pred eEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecc
Q 010300 377 IAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGR 456 (513)
Q Consensus 377 iAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~ 456 (513)
|||++++||++|||+|+++++|.+|++++++|++++|+|+|+++||+||||||||+|+||+++|+||||+||+|||++|+
T Consensus 450 vAv~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~ 529 (590)
T TIGR02927 450 FAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGA 529 (590)
T ss_pred EEEECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeEEc--CCC--ceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHH
Q 010300 457 IEKVPRLS--DDG--NVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 506 (513)
Q Consensus 457 i~~~p~~~--~~G--~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~ 506 (513)
++++|++. ++| .++++++|+|||+||||||||+++|+||++|+++||||.
T Consensus 530 i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~ 583 (590)
T TIGR02927 530 IVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAA 583 (590)
T ss_pred ceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCcc
Confidence 99999985 344 499999999999999999999999999999999999987
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=4.2e-86 Score=718.78 Aligned_cols=413 Identities=27% Similarity=0.428 Sum_probs=338.0
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
.++|+||+||+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999975443
Q ss_pred CCCCC-CCCCC----CCCCCC----CCCCC--CCCCCCC----C-CCCCc-ccCHHHHHHHHHhCCCCCCccCCCCCCce
Q 010300 169 AVPTP-SSDVL----ESVKPP----GSENS--PDSKLNK----D-TVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRV 231 (513)
Q Consensus 169 ~~~~~-~~~~~----~~~~~~----~~~~~--~~~~~~~----~-~~~~~-~asPaaR~lA~e~gidl~~v~GTG~~GrI 231 (513)
+.... ....+ +.+.+. ...+. .+..+.. . ...+. ++||+||+||+||||||+.|.|||++|||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 00000 000000 00000 0000000 0 11133 69999999999999999999999999999
Q ss_pred eHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEe
Q 010300 232 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYV 310 (513)
Q Consensus 232 tk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~ 310 (513)
+++||++|+.+... ..++.+.. .... ....+..+. ........++++|++++||.|+++|++| +++||||++
T Consensus 275 ~~~DV~~~~~~~~~-~~~~~~~~-~~~~----~~~~~~~~~-~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~ 347 (546)
T TIGR01348 275 LREDVQRFVKEPSV-RAQAAAAS-AAGG----APGALPWPN-VDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF 347 (546)
T ss_pred eHHHHHHHhhcccc-ccCccccc-ccCC----ccccCCCcc-ccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence 99999999853211 01110000 0000 000000000 0000111246689999999999999999 589999999
Q ss_pred eeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeee
Q 010300 311 EEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNI 390 (513)
Q Consensus 311 ~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI 390 (513)
.++|+|+|+++|+++|+..+..|.|+||++||+||+++||++||.||++|++++.++++++++||||||++++||++|||
T Consensus 348 ~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi 427 (546)
T TIGR01348 348 DKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVI 427 (546)
T ss_pred EEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCc
Confidence 99999999999999997655568899999999999999999999999999876558999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCcee
Q 010300 391 KNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY 470 (513)
Q Consensus 391 ~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~ 470 (513)
++++++||.+|++++++|++++|+|+|+++||+||||||||+|++|+.+|+||||+||+|||++|+++++|+++ +|+++
T Consensus 428 ~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~ 506 (546)
T TIGR01348 428 KDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFE 506 (546)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 67899
Q ss_pred eEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 471 PSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 471 ~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
++++|+|||+||||+|||+++++||++|+++||||+.|||
T Consensus 507 ~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 507 PRLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred EEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999999998875
No 8
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=9.7e-86 Score=697.62 Aligned_cols=403 Identities=28% Similarity=0.448 Sum_probs=332.1
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCe-eecccEEEEEecCCCCC
Q 010300 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGDSAV 170 (513)
Q Consensus 92 ~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~-v~~G~~l~~i~~~~~~~ 170 (513)
++||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|++|+.++++.
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~ 81 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV 81 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999 99999999997543221
Q ss_pred CCC--------C-CC--CCC-C-CCCCC-CCC-CCC--C--CC---CC---CCC-CCcccCHHHHHHHHHhCCCCCCccC
Q 010300 171 PTP--------S-SD--VLE-S-VKPPG-SEN-SPD--S--KL---NK---DTV-GGVLATPTVRNLAKLYGINLYDVDA 224 (513)
Q Consensus 171 ~~~--------~-~~--~~~-~-~~~~~-~~~-~~~--~--~~---~~---~~~-~~~~asPaaR~lA~e~gidl~~v~G 224 (513)
+.. . +. ..+ . ..+.. ..+ ..+ . .+ .. ... ..+.+||+||+||+||||||+.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 100 0 00 000 0 00000 000 000 0 00 00 001 1356999999999999999999999
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-cc
Q 010300 225 TGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK 303 (513)
Q Consensus 225 TG~~GrItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~ 303 (513)
||++|||+++||++|+..... .++.... .. .+....+ +.......++.+||+++||.|+++|++| ++
T Consensus 162 tG~~GrI~~~DV~~~~~~~~~-~~~~~~~-~~-------~~~~~~~---~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ 229 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQSPA-SANFQAA-AT-------TPATKKA---AAPVSTGSYEDVPLSNIRKIIAKRLLESKQT 229 (435)
T ss_pred CCCCCceeHHHHHHHHhcccc-cCCCccc-cc-------ccccccc---CCCccCCcceeecccHHHHHHHHHHHHHHhh
Confidence 999999999999999853111 1110000 00 0000000 0000111245689999999999999999 58
Q ss_pred ccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCC
Q 010300 304 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 383 (513)
Q Consensus 304 iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~ 383 (513)
+|||++..++|+|+|+++|+++++...+ |.++||++||+||+++||++||.||++|+++ +|++|++|||||||++++
T Consensus 230 ip~~~~~~evd~t~l~~~r~~~~~~~~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~--~i~~~~~vnigvAv~~~~ 306 (435)
T TIGR01349 230 IPHYYVSIECNVDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTDN--FIRRYKNVDISVAVATPD 306 (435)
T ss_pred CCeEEEEEEEEhHHHHHHHHHHHhhhhc-CCcccHHHHHHHHHHHHHHhCcHhheEEeCC--eEEEeCCeeEEEEEECCC
Confidence 9999999999999999999999865444 7899999999999999999999999999864 799999999999999999
Q ss_pred CeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEE
Q 010300 384 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRL 463 (513)
Q Consensus 384 Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~ 463 (513)
||++|||++++++|+.||+++++++++++|+|+|+++|+.||||||||+|++|+.+|+||||+||+|||++|++.++|++
T Consensus 307 GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~ 386 (435)
T TIGR01349 307 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVV 386 (435)
T ss_pred CeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCc---eeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 464 SDDGN---VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 464 ~~~G~---i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
. +|+ ++++++|+|||+||||||||+++|+||++|+++||||+.|||
T Consensus 387 ~-~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 387 D-NDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred e-CCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 5 455 999999999999999999999999999999999999998875
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.1e-83 Score=675.58 Aligned_cols=402 Identities=32% Similarity=0.566 Sum_probs=342.8
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
.++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|+.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCCC
Q 010300 169 AVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADG 248 (513)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~~ 248 (513)
..+.......++..+.. ..++...+ ........++|++|+||+|+|||++++.|||++|||+++|+++++... . .
T Consensus 82 ~~~a~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~-~--~ 156 (404)
T COG0508 82 DAPAAAEAPPEPAAAAP-ASAPATAA-SAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEK-A--A 156 (404)
T ss_pred cccccCcccCCccccCc-CcccCccc-cccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccc-c--c
Confidence 43111110000000000 00000000 001145789999999999999999999999999999999999998653 0 1
Q ss_pred CCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcC
Q 010300 249 PSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQN 327 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~ 327 (513)
++.+... ..+.+ .......+++|++++||.|+++|..| ..+||++...++|++.++++|++++.
T Consensus 157 ~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~ 221 (404)
T COG0508 157 AAAAPAP----------AAAAP-----ASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKE 221 (404)
T ss_pred ccccccc----------ccCCc-----ccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhh
Confidence 1000000 00000 02234567899999999999999998 58999999999999999999999998
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHH
Q 010300 328 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR 407 (513)
Q Consensus 328 ~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~ 407 (513)
.+...|.|+||++|++||++.||+++|.+|++++++...+++++++|||+||++++||++|||++++++++.+|++++.+
T Consensus 222 ~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~ 301 (404)
T COG0508 222 EFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKD 301 (404)
T ss_pred hhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHH
Confidence 76655999999999999999999999999988886422799999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 010300 408 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 487 (513)
Q Consensus 408 l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviD 487 (513)
|..++|+|+|+++||+||||||||+|++|...|+||||+||++||++|++.++|++. +|+++++++|+|+|+||||++|
T Consensus 302 la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls~DHRviD 380 (404)
T COG0508 302 LAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLSYDHRVID 380 (404)
T ss_pred HHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeecccccccccc
Confidence 999999999999999999999999999999999999999999999999999999995 5599999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCHHHHhhc
Q 010300 488 GATVAKFCNEWKQLIENPELLLLQ 511 (513)
Q Consensus 488 G~~aa~Fl~~lk~~Le~P~~lll~ 511 (513)
|+++++||..++++||||..||++
T Consensus 381 Ga~aa~Fl~~ik~~le~p~~ll~~ 404 (404)
T COG0508 381 GAEAARFLVALKELLEDPERLLLE 404 (404)
T ss_pred cHHHHHHHHHHHHHhcChhhhhcC
Confidence 999999999999999999999874
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=1.2e-82 Score=703.67 Aligned_cols=415 Identities=28% Similarity=0.446 Sum_probs=335.6
Q ss_pred ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 88 ~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|+.++
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 45799999999 8999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred CCCC-CCCCC-CCCCCCC--CCCCC--CCC-CC-CC---CCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHH
Q 010300 168 SAVP-TPSSD-VLESVKP--PGSEN--SPD-SK-LN---KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236 (513)
Q Consensus 168 ~~~~-~~~~~-~~~~~~~--~~~~~--~~~-~~-~~---~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV 236 (513)
+... ..... .+.+... ....+ .+. .. .. .....++++||+||+||+||||||+.|+|||++|||+++||
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 362 (633)
T PRK11854 283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDV 362 (633)
T ss_pred CCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHH
Confidence 3211 11000 0000000 00000 000 00 00 01112367999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEeeeeec
Q 010300 237 LKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINC 315 (513)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDv 315 (513)
++|+........++.+.....+.. +. ..+.+.........++++||+++||.|+++|++| +++|||+++.++|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~ 437 (633)
T PRK11854 363 QAYVKDAVKRAEAAPAAAAAGGGG----PG-LLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADI 437 (633)
T ss_pred HHHhhccccccccCCccccccccc----cc-ccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEc
Confidence 999853211000000000000000 00 0000000000111245689999999999999999 58999999999999
Q ss_pred hHHHHHHHHhcCCCC--CCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecC
Q 010300 316 DALVKLKASFQNNNS--DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNV 393 (513)
Q Consensus 316 t~l~~~rk~~~~~~~--~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a 393 (513)
|+|+++|+++++... +.|.++||++||+||+++||++||+||++|+++++++++|+++||||||++++||++|||+++
T Consensus 438 t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a 517 (633)
T PRK11854 438 TELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDV 517 (633)
T ss_pred HHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCC
Confidence 999999998875432 357899999999999999999999999999865568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEc
Q 010300 394 QSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSP 473 (513)
Q Consensus 394 ~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~ 473 (513)
++++|.+|+++++++.+++++|+|+++|+.||||||||+||+|+++|+||||+||+|||++|++.++|+++ +|++++|+
T Consensus 518 ~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~~r~ 596 (633)
T PRK11854 518 NKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFAPRL 596 (633)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 67899999
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 474 IMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 474 ~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
+|+|||+||||+|||+++|+||++|+++||+|+.|||
T Consensus 597 ~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 597 MLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999998875
No 11
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=5.2e-82 Score=663.61 Aligned_cols=370 Identities=23% Similarity=0.427 Sum_probs=303.5
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++||.|++|++|++|+.+++
T Consensus 91 m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~~ 170 (463)
T PLN02226 91 TVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSED 170 (463)
T ss_pred ceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCCc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCC
Q 010300 169 AVPTPSSDVLESVKPPGSENSPDSKLN-KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAAD 247 (513)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~ 247 (513)
+.+......++ +. . +...+..+. .....++.++|++|+.+ .++|+.+
T Consensus 171 ~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~v~asp~~r~~~----------~~~~~~~------------------ 218 (463)
T PLN02226 171 AASQVTPSQKI-PE--T-TDPKPSPPAEDKQKPKVESAPVAEKPK----------APSSPPP------------------ 218 (463)
T ss_pred cccccCccCCC-CC--C-CCCCCCCccccccccCCCcchhhcccc----------CCCCCCC------------------
Confidence 21110000000 00 0 000000000 00011233444443211 1111110
Q ss_pred CCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhc
Q 010300 248 GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQ 326 (513)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~ 326 (513)
++. . .. . +. . .....++.+|++++||.|+++|++| +++||||+..++|+|+|+++|++++
T Consensus 219 -~~~-~----------~~--~-~~---~-~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~ 279 (463)
T PLN02226 219 -PKQ-S----------AK--E-PQ---L-PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYK 279 (463)
T ss_pred -Ccc-c----------cc--C-cc---c-ccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHH
Confidence 000 0 00 0 00 0 0011245689999999999999999 5899999999999999999999998
Q ss_pred CCCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHH
Q 010300 327 NNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKEL 405 (513)
Q Consensus 327 ~~~~-~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~ 405 (513)
+.+. ..|.|+||++||+||+++||++||.+|++|+++ .|+++++|||||||++++||++|||++++++++.||++++
T Consensus 280 ~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei 357 (463)
T PLN02226 280 DAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTI 357 (463)
T ss_pred hhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCC--EEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHH
Confidence 7654 348899999999999999999999999999865 7999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccc
Q 010300 406 SRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRV 485 (513)
Q Consensus 406 ~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRv 485 (513)
++|++++|+|+|+++|++||||||||+|++|+.+|+||||+||+|||++|++.++|++. ||++++|++|+|||+||||+
T Consensus 358 ~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHRV 436 (463)
T PLN02226 358 NGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYVALTYDHRL 436 (463)
T ss_pred HHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEEeEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred cChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 486 LDGATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 486 iDG~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|||+++|+||++|+++||+|+.||+++
T Consensus 437 IDGa~aA~FL~~lk~~LE~P~~LLl~~ 463 (463)
T PLN02226 437 IDGREAVYFLRRVKDVVEDPQRLLLDI 463 (463)
T ss_pred hCcHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999999999999999999999874
No 12
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=4.8e-83 Score=653.24 Aligned_cols=409 Identities=28% Similarity=0.434 Sum_probs=343.8
Q ss_pred CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCC-CeeecccEEEEEec
Q 010300 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLVV 165 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g-~~v~~G~~l~~i~~ 165 (513)
..++.|.||.|+++|+||.|++|.++|||++++||+||||||||++|++++.++|+++||+++|| ..|++|++|++|.+
T Consensus 36 p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive 115 (470)
T KOG0557|consen 36 PAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVE 115 (470)
T ss_pred CcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEec
Confidence 55689999999999999999999999999999999999999999999999999999999999999 57999999999998
Q ss_pred CCCCCCCCC---C----C-----CCC-CCCCCCCCCCCC---CC-----CCCCC-CCCcccCHHHHHHHHHhCCCCCCcc
Q 010300 166 GDSAVPTPS---S----D-----VLE-SVKPPGSENSPD---SK-----LNKDT-VGGVLATPTVRNLAKLYGINLYDVD 223 (513)
Q Consensus 166 ~~~~~~~~~---~----~-----~~~-~~~~~~~~~~~~---~~-----~~~~~-~~~~~asPaaR~lA~e~gidl~~v~ 223 (513)
.+++..... . . +++ ++.+.......+ +. +.... .+++++||++|+||.|||||++.|+
T Consensus 116 ~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i~ 195 (470)
T KOG0557|consen 116 DEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIP 195 (470)
T ss_pred ccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccCc
Confidence 776532111 0 0 000 011100000011 11 11111 2367899999999999999999999
Q ss_pred CCCCCCceeHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-c
Q 010300 224 ATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-A 302 (513)
Q Consensus 224 GTG~~GrItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~ 302 (513)
||||+|||+|.||++|++..+...+...+.. .+. +++. +........+++|++.||+.|+++|.+| +
T Consensus 196 gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~---~~~-------~~~~--a~~~~~~~~~diP~s~mr~viakrl~eSk~ 263 (470)
T KOG0557|consen 196 GTGPHGRILKGDIEKHVGSGKKKSAKAPKAS---APP-------PAPA--APPVSLPGYEDIPVSNMRRVIAKRLLESKQ 263 (470)
T ss_pred CcCCCceeehhhHHHhhcccccccccCCCcc---CCC-------cCcc--CCcCCCCcccccccchhhhhhhhhhhhhhc
Confidence 9999999999999999975332111111000 000 0000 0011111267899999999999999999 7
Q ss_pred cccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecC
Q 010300 303 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQ 382 (513)
Q Consensus 303 ~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~ 382 (513)
+|||||++.+++++.|+++|+++| +++.+.++|+++|++||++.||.++|+.|++|.++ ..|.++++|||++||+++
T Consensus 264 ~IPh~yvt~~~~~d~ll~~r~~ln--~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~~~VdisvAVat~ 340 (470)
T KOG0557|consen 264 TIPHYYVTVDVNLDKLLALREKLN--FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQLSSVDISVAVATP 340 (470)
T ss_pred CCCeEEEeeeeehHHHHHHHHHhh--hcccCcccchhHHHHHHHHHHHhcCCcccceecCC-ccccccCcCChhheeecc
Confidence 899999999999999999999998 55677899999999999999999999999999986 579999999999999999
Q ss_pred CCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeE
Q 010300 383 HGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPR 462 (513)
Q Consensus 383 ~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~ 462 (513)
+||++|+|+|++.+.+.+|.+++.+|.+++|.|+|.|++++||||+||||||||++.|+.|+||||.|||++|..++..+
T Consensus 341 ~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v 420 (470)
T KOG0557|consen 341 NGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVV 420 (470)
T ss_pred CcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred E--cCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 463 L--SDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 463 ~--~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
. +.++++.....|+|||++|||++||+.++|||+.|+++||||+.|||
T Consensus 421 ~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 421 PDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred cCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 4 55677888999999999999999999999999999999999999986
No 13
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.9e-81 Score=685.05 Aligned_cols=416 Identities=33% Similarity=0.552 Sum_probs=336.9
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..+|+||+||+ |+||+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|.+|++|+.+...++
T Consensus 119 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~~ 197 (547)
T PRK11855 119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAA 197 (547)
T ss_pred ceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred CC-CC--CCCCCCCCC-CC-CCCCCCC----C-CCCCC-CCCCCc-ccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHH
Q 010300 169 AV-PT--PSSDVLESV-KP-PGSENSP----D-SKLNK-DTVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236 (513)
Q Consensus 169 ~~-~~--~~~~~~~~~-~~-~~~~~~~----~-~~~~~-~~~~~~-~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV 236 (513)
.. .. .....+... .. ....+.. . ..+.. ...++. .+||+||+||+||||||++|+|||++|||+++||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 277 (547)
T PRK11855 198 APAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDV 277 (547)
T ss_pred ccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHHH
Confidence 21 00 000000000 00 0000000 0 00000 111234 7999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHhc-cccEEEEeeeeec
Q 010300 237 LKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINC 315 (513)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDv 315 (513)
++|+.+......++......... ....+.+.+.........++.+||+++||.|+++|++|+ ++|||+++.++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~ 353 (547)
T PRK11855 278 QAFVKGAMSAAAAAAAAAAAAGG----GGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADI 353 (547)
T ss_pred HHHhhcccccccccccccccccc----ccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEC
Confidence 99985321111110000000000 000000000000000112456899999999999999994 8999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCC
Q 010300 316 DALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQS 395 (513)
Q Consensus 316 t~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~ 395 (513)
|+|+++|+++++..++.|.++||++||+||+++||++||+||++|+++++++++|++|||||||++++||++|+|+++++
T Consensus 354 t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~ 433 (547)
T PRK11855 354 TDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDK 433 (547)
T ss_pred hHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCcc
Confidence 99999999998655556899999999999999999999999999986555899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEE
Q 010300 396 LSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIM 475 (513)
Q Consensus 396 ~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m 475 (513)
+++.+|+++++++++++|+|+|.++|+.||||||||+||+|+++|+|+||+||+|||++|++.++|++ .+|++..+.+|
T Consensus 434 ~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~-~~~~~~~r~~m 512 (547)
T PRK11855 434 KSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVW-DGKEFVPRLML 512 (547)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeee-eCCEEEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999966 57889999999
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
+|||+||||+|||+|+++||++|+++||+|+.|||
T Consensus 513 ~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 513 PLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred EEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999999998875
No 14
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=2.6e-80 Score=656.15 Aligned_cols=398 Identities=34% Similarity=0.600 Sum_probs=333.5
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC-
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS- 168 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~- 168 (513)
.+++||++|++|.+|+|++|+|++||.|++||+||+||+||+.++++||++|+|.++++++|+.|.+|++|+.|...++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~ 82 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA 82 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999986544
Q ss_pred CCC-CCCCCCC-CCCCCCC-CCC---CCCCC---CCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHH
Q 010300 169 AVP-TPSSDVL-ESVKPPG-SEN---SPDSK---LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (513)
Q Consensus 169 ~~~-~~~~~~~-~~~~~~~-~~~---~~~~~---~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~ 239 (513)
+.. .+..... +...+.. ..+ ..++. +.........+||+||+||+||||||++|.|||++|||+++||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~~ 162 (411)
T PRK11856 83 EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAA 162 (411)
T ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHHH
Confidence 211 1100000 0000000 000 00000 0000111236899999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHH
Q 010300 240 AVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDAL 318 (513)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l 318 (513)
+.+......++... +... +. .....++.+|++++||.|+++|.+| .++|||+++.+||+|+|
T Consensus 163 ~~~~~~~~~~~~~~--------------~~~~--~~-~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l 225 (411)
T PRK11856 163 AAAAAPAAAAAAAA--------------AAAP--PA-AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL 225 (411)
T ss_pred HhcccccCCCCCCC--------------CCCC--Cc-ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence 85321100000000 0000 00 0111356789999999999999999 59999999999999999
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCH
Q 010300 319 VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSI 398 (513)
Q Consensus 319 ~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl 398 (513)
+++++++++. +.++||++||+||+++||++||+||++|+++ ++++|+++|||+||++++||++|+|+++++++|
T Consensus 226 ~~~~k~~~~~----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~--~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl 299 (411)
T PRK11856 226 LALRKQLKAI----GVKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKKYVNIGIAVATDGGLIVPVIRDADKKSL 299 (411)
T ss_pred HHHHHHHHhh----ccCccHHHHHHHHHHHHHHhCcHhheEEeCC--EEEEcCCcCEEEEEECCCCeEeCcCCCcccCCH
Confidence 9999999642 3699999999999999999999999999876 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEE
Q 010300 399 LEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVN 478 (513)
Q Consensus 399 ~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vs 478 (513)
.+|+++++++++++++|+|.++|+.+|||||||+||+|..+|+|+||+||+|||++|++.++|++. +|+++++.+||||
T Consensus 300 ~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~ls 378 (411)
T PRK11856 300 FELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLS 378 (411)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999985 7899999999999
Q ss_pred EEecccccChHHHHHHHHHHHHHhhCHHHHhhc
Q 010300 479 IGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 511 (513)
Q Consensus 479 lt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~ 511 (513)
|+||||+|||+|+++||++|+++||+|+.||++
T Consensus 379 lt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~~ 411 (411)
T PRK11856 379 LSFDHRVIDGADAARFLKALKELLENPALLLLE 411 (411)
T ss_pred EEeehhhcCcHHHHHHHHHHHHHHhCHHHHhcC
Confidence 999999999999999999999999999999874
No 15
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.3e-79 Score=641.62 Aligned_cols=375 Identities=26% Similarity=0.474 Sum_probs=311.4
Q ss_pred CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..+.+|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.|+..
T Consensus 42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCC
Q 010300 167 DSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 246 (513)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~ 246 (513)
+++...+. .++....+. . +.+.. .....|.+|+++.++++++..+.. ..
T Consensus 122 ~~~~~~~~--~~~~~~~~~---~--~~~~~----~~~~~p~~~~~a~~~~~a~p~vr~---------------~~----- 170 (418)
T PTZ00144 122 GAPPAAAP--AAAAAAKAE---K--TTPEK----PKAAAPTPEPPAASKPTPPAAAKP---------------PE----- 170 (418)
T ss_pred Cccccccc--cccCCCCCc---c--CCCCC----CCCCCCccccccccccCCchhhhc---------------cc-----
Confidence 43211110 000000000 0 00000 001235666777666666665521 00
Q ss_pred CCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHh
Q 010300 247 DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASF 325 (513)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~ 325 (513)
..+.... . +.+. ......++.+|++++||.|+++|++| +++|||+++.++|+|+|+++|+++
T Consensus 171 ~~~~~~~-~------------~~~~----~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~ 233 (418)
T PTZ00144 171 PAPAAKP-P------------PTPV----ARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEY 233 (418)
T ss_pred cCCCCCC-C------------CCCc----cccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHH
Confidence 0010000 0 0000 00011235589999999999999999 589999999999999999999999
Q ss_pred cCCCCC-CCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHH
Q 010300 326 QNNNSD-PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKE 404 (513)
Q Consensus 326 ~~~~~~-~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~ 404 (513)
++...+ .|.|+||++||+||+++||++||.+|++|+++ ++++++++|||+||++++||++|||++++++++.+|+++
T Consensus 234 ~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~--~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~e 311 (418)
T PTZ00144 234 KDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGD--EIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKE 311 (418)
T ss_pred HhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCC--EEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHH
Confidence 865543 48899999999999999999999999999865 799999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEeccc
Q 010300 405 LSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHR 484 (513)
Q Consensus 405 ~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHR 484 (513)
+++|++++|+|+|+++|+.||||||||+|++|+.+|+||||+||+|||++|++.++|++. +|+++++++|+|||+||||
T Consensus 312 i~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHR 390 (418)
T PTZ00144 312 LADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYLALTYDHR 390 (418)
T ss_pred HHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEE-CCEEEEEeEEEEEEecchh
Confidence 999999999999999999999999999999999999999999999999999999999995 7899999999999999999
Q ss_pred ccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 485 VLDGATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 485 viDG~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
+|||+++|+||++|+++||+|+.||++|
T Consensus 391 viDGa~AA~FL~~lk~~LE~P~~lll~~ 418 (418)
T PTZ00144 391 LIDGRDAVTFLKKIKDLIEDPARMLLDL 418 (418)
T ss_pred hhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 9999999999999999999999999875
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1e-73 Score=563.44 Aligned_cols=385 Identities=25% Similarity=0.452 Sum_probs=306.9
Q ss_pred CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
...+++..|.++|+++||+|.+|++++||.|++++.||+|||||.+++|.||.+|+|.+++|++||+|..|+.|+.|..+
T Consensus 70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCC
Q 010300 167 DSAVPTPSS-DVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGA 245 (513)
Q Consensus 167 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~ 245 (513)
.+....... ++...++.+.+..+++ ++.+ .+....+.|.++ .
T Consensus 150 aApa~~~~~apa~~~pk~~~a~~a~p-~~~s-~~~p~~~apv~e-----------------------------------~ 192 (457)
T KOG0559|consen 150 AAPAKGGASAPAKAEPKTAPAAAAPP-KPSS-KPPPKEAAPVAE-----------------------------------S 192 (457)
T ss_pred CCCccccccCCCccCCCCCCCCCCCC-CccC-CCCccccCCCCC-----------------------------------C
Confidence 433221110 0000000000000100 0000 000011111110 0
Q ss_pred CCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHhc-cccEEEEeeeeechHHHHHHHH
Q 010300 246 ADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKAS 324 (513)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDvt~l~~~rk~ 324 (513)
.++|.+..+..+........ ++.+.+......+..+.+++|++||..||.|+..|+ +....+...||||++|+++||+
T Consensus 193 p~~p~~~~P~~~~a~k~~v~-~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ 271 (457)
T KOG0559|consen 193 PPAPSSPEPVPASAKKPSVA-QPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQ 271 (457)
T ss_pred CCCCCCCCCCCccccCcccc-CCCCCcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 00010000000000000000 000001111112345788999999999999999996 4566677789999999999999
Q ss_pred hcCCC-CCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHH
Q 010300 325 FQNNN-SDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITK 403 (513)
Q Consensus 325 ~~~~~-~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~ 403 (513)
+++.+ +++|+|+.|+.+|+||++.||++.|.+|+.++++ +|+|+|++||+|||+|+.||++|||+|++.|++.||..
T Consensus 272 ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~--~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~ 349 (457)
T KOG0559|consen 272 YKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGD--DIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEK 349 (457)
T ss_pred HHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCC--eeEEeecceeEEEeecCCceeeeeecccccccHHHHHH
Confidence 99876 5899999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecc
Q 010300 404 ELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADH 483 (513)
Q Consensus 404 ~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DH 483 (513)
++..|..+||+|+|..+||.||||||||-|.||..+.||||||||++|||+..|.++|++. +|++++|++|.|.|||||
T Consensus 350 ~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~Vv~RPMMYvALTYDH 428 (457)
T KOG0559|consen 350 TIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQVVPRPMMYVALTYDH 428 (457)
T ss_pred HHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEeeeccceEEEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999995 799999999999999999
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 484 RVLDGATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 484 RviDG~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|+|||.+|--||+++|+++|||..|||+|
T Consensus 429 RliDGREAVtFLr~iK~~VEDP~~mll~l 457 (457)
T KOG0559|consen 429 RLIDGREAVTFLRKIKEAVEDPRKMLLDL 457 (457)
T ss_pred cccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 99999999999999999999999999986
No 17
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=3.8e-71 Score=560.24 Aligned_cols=302 Identities=32% Similarity=0.585 Sum_probs=258.6
Q ss_pred cccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCC
Q 010300 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPD 281 (513)
Q Consensus 202 ~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (513)
+++||+||+||+||||||++|+|||++|||+|+||++|+.+....+.+........... .+..+.+. + ......
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-~~~~~~ 75 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQ---AAKTAAPA--A-APPKLE 75 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccc---cccccCCc--c-cccCCC
Confidence 46899999999999999999999999999999999999853211011100000000000 00000000 0 001112
Q ss_pred CccccCchhHHHHHHHHHHhc-cccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 010300 282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (513)
Q Consensus 282 ~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~~ 359 (513)
++.+|++++|+.|+++|++|+ ++|||++..+||+|+|+++|+++++.+. ..|.|+||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 456899999999999999994 8999999999999999999999986543 45889999999999999999999999999
Q ss_pred EccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCcc
Q 010300 360 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 439 (513)
Q Consensus 360 ~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~ 439 (513)
|++++++++++++|||||||++++||++|||++++++|+.||++++++|.+++|+|+|.++|++||||||||+|++|+.+
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~ 235 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence 98765689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 440 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 440 ~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
|+||||+||+|||++|++.++|++ .||+++++++|+|||+||||+|||+++|+||++|+++||+|+.|++
T Consensus 236 ~tpiIn~pq~aILgvG~i~~~pvv-~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 236 GVPVINYPELAIAGVGAIIDKAIV-KNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred eecccCCCccceeecccceEEeEE-ECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 999999999999999999999999 4799999999999999999999999999999999999999997654
No 18
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-71 Score=570.73 Aligned_cols=298 Identities=24% Similarity=0.410 Sum_probs=258.9
Q ss_pred CcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCC
Q 010300 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYP 280 (513)
Q Consensus 201 ~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
...+||+||+||+||||||++|+|||++|||+++||++|+..... .+..+... .. . +....+. + .+...
T Consensus 48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~--~~~~~~~~---~~--~-~~~~~~~--~-~~~~~ 116 (347)
T PRK14843 48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIE--NDSIKSPA---QI--E-KVEEVPD--N-VTPYG 116 (347)
T ss_pred cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhcccc--CccccCCC---CC--c-cccCCCc--c-cccCC
Confidence 356999999999999999999999999999999999999853211 11000000 00 0 0000000 0 00112
Q ss_pred CCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccce
Q 010300 281 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNS 358 (513)
Q Consensus 281 ~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~ 358 (513)
.++.+|++++||.|+++|++| +++||||+..+||+|+|+++|+++++.+. ..|.|+||++||+||++.||++||.||+
T Consensus 117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na 196 (347)
T PRK14843 117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA 196 (347)
T ss_pred cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence 245689999999999999999 58999999999999999999999986443 3478999999999999999999999999
Q ss_pred EEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCc
Q 010300 359 CFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGK 438 (513)
Q Consensus 359 ~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~ 438 (513)
+|++++.+++++++|||||||++++||++|||++++++++.||++++++|.+++|+|+|+++|++||||||||+|++|+.
T Consensus 197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~ 276 (347)
T PRK14843 197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ 276 (347)
T ss_pred EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence 99876557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 439 FGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 439 ~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
+|+|||||||+|||++|++.++|++. ||+++++++|+|||+||||+|||+++|+||+.|+++||+|+.||+
T Consensus 277 ~~tpIInpPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 277 SFGPIINQPNSAILGVSSTIEKPVVV-NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred ceeccccCCceEEEecCCcceeeEEE-CCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 99999999999999999999999995 789999999999999999999999999999999999999998764
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=8.9e-60 Score=461.36 Aligned_cols=228 Identities=37% Similarity=0.675 Sum_probs=203.5
Q ss_pred CCccccCchhHHHHHHHHHHhc-cccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 010300 281 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (513)
Q Consensus 281 ~~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~ 359 (513)
+++++|++++||+|+++|++|+ ++||||+..+||+|+|+++|+++++.....|.++|+++|++||+++||++||+||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 5678999999999999999996 899999999999999999999998765545569999999999999999999999999
Q ss_pred EccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCcc
Q 010300 360 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 439 (513)
Q Consensus 360 ~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~ 439 (513)
|++++ ++++++++|||+||++++||++|||++++++|+.||+++++++++++++|+|+++|++||||||||+|++|+.+
T Consensus 83 ~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~ 161 (231)
T PF00198_consen 83 WDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES 161 (231)
T ss_dssp EETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred ccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence 99875 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 440 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 440 ~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
|+|||||||+|||++|+++++|++ .+|+++++++|++||+||||++||+++++||++|+++||+|++|||
T Consensus 162 ~~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 162 FTPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp EE----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eEccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 999999999999999999999999 6889999999999999999999999999999999999999999986
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.6e-49 Score=430.87 Aligned_cols=223 Identities=26% Similarity=0.392 Sum_probs=211.3
Q ss_pred CCccccCchhHHHHHHHHHHhccccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 010300 281 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (513)
Q Consensus 281 ~~~~vp~s~~rr~ia~~m~~s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~~ 359 (513)
+++.+||+|++++|+++|..|+.+|+++...+|+++.|+++|+.+|+.++ ..|.|+||+++|+||+++||++||.+|++
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 56789999999999999999999999999999999999999999998765 67899999999999999999999999999
Q ss_pred Ecc-CC-ceEEEcccceEEeEEecC-----CCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeC
Q 010300 360 FNE-ES-LEVILKGSHNIGIAMATQ-----HGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNI 432 (513)
Q Consensus 360 ~~~-d~-~~i~~~~~i~igiAv~~~-----~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnl 432 (513)
|++ |+ ..++++++||||+||+++ +||+||+|+++++|+|.+|.+++++++++||+|+|+++||+||||||||+
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~ 273 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP 273 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence 985 33 249999999999999998 58999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceeccCCCceeEEEecceEEeeEEcC-----CCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 433 GAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSD-----DGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 433 g~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~-----~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
|+||+.+|+|+||+||+|||++|++...+++.. ++++.++++|+||+|||||+|||+++|+||+.|+++||
T Consensus 274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 999999999999999999999999999888842 46899999999999999999999999999999999998
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.94 E-value=4.8e-26 Score=220.26 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=155.3
Q ss_pred cEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCC
Q 010300 305 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHG 384 (513)
Q Consensus 305 P~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~G 384 (513)
|.|+++.+||||+|+++.|+. +++|++.++||+++|+|++|+||.++.++ ++++||.++++++|..+++
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~~---------~~~fy~~~ly~v~kavN~~~eFR~r~~~~--~v~~~D~i~ps~Ti~~~~~ 99 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDSVHPCYTVFHEQT 99 (219)
T ss_pred CceEEEEEEEHHHHHHHHHHc---------CCChHHHHHHHHHHHHhcCHhHheEEECC--eEEEEeEEeeeEEEEeCCC
Confidence 459999999999999999885 89999999999999999999999999654 7899999999999997776
Q ss_pred eEeeeeecCCCCCHHHHHHHHHHHHHHhhcCC-CCCCCCCCCeEEEEeCCCCCCccceeccC-CC--ceeEEEecceEEe
Q 010300 385 LAVPNIKNVQSLSILEITKELSRLQQLAKDNE-LNPADNSGGTITLSNIGAIGGKFGAPLLN-LP--EVAIIAMGRIEKV 460 (513)
Q Consensus 385 l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~-l~~~d~~ggtftISnlg~~G~~~~tpii~-~p--q~ail~iG~i~~~ 460 (513)
..+-.++.....++.+|.+...+.++++++++ +.+++...+.|.||+++|+..++++.-++ .. .++++++|++.+
T Consensus 100 ~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~- 178 (219)
T PRK13757 100 ETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT- 178 (219)
T ss_pred ceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEE-
Confidence 45567899999999999999999999998864 55555556899999999988777644333 22 457899999876
Q ss_pred eEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 461 PRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 461 p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
++| |.+||||+++||.+|||+|+++|++.||++|++
T Consensus 179 ----~~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 179 ----QGD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred ----ECC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 467 889999999999999999999999999999986
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.94 E-value=6.2e-26 Score=218.16 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=140.3
Q ss_pred ccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEec
Q 010300 302 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMAT 381 (513)
Q Consensus 302 ~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~ 381 (513)
..-|+|+++.+||||+|+++.|+. +++|+++++|++++|+|++|+||.++.++| ++++||.++++++|..
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~~---------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g-~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKEK---------GLSFFPAYLYAIMKAANEIPEFRYRIVDDG-EVVYYDRIDPSYTVFH 92 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHHT---------T--HHHHHHHHHHHHHTTSGGGCEEEETTS-CEEEESS-EEEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHHc---------CCCcHHHHHHHHHHHHhcCHHHheeeeCCC-cEEEECCcceeeeEEe
Confidence 357999999999999999999886 899999999999999999999999998874 8999999999999987
Q ss_pred CCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcC-CCCCCC-CCCCeEEEEeCCCCCCcccee-ccCCC--ceeEEEecc
Q 010300 382 QHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNPAD-NSGGTITLSNIGAIGGKFGAP-LLNLP--EVAIIAMGR 456 (513)
Q Consensus 382 ~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~~d-~~ggtftISnlg~~G~~~~tp-ii~~p--q~ail~iG~ 456 (513)
+++..+-.++-....++.+|.+...+.++++++. .+.+++ ...+.|.+|+++|+..++++. +-+.+ .++++++|+
T Consensus 93 ~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK 172 (206)
T PF00302_consen 93 KDDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGK 172 (206)
T ss_dssp TTTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE-
T ss_pred CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeee
Confidence 6543445677789999999999999999998774 354443 345799999999998887644 33332 368999999
Q ss_pred eEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHH
Q 010300 457 IEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK 499 (513)
Q Consensus 457 i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk 499 (513)
+.+ ++| |.+|||++++||+++||+|+|+|+++||
T Consensus 173 ~~~-----~~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 173 YFE-----ENG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp -EE-----ETT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred eEe-----ECC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 987 478 8899999999999999999999999987
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.87 E-value=6.6e-21 Score=177.01 Aligned_cols=189 Identities=11% Similarity=0.111 Sum_probs=159.6
Q ss_pred HhccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEE
Q 010300 300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM 379 (513)
Q Consensus 300 ~s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv 379 (513)
+....|||.++.+.|+|++..+.|+. +++|++++++|+.++++++++||.++.++ +++++|.+++.++|
T Consensus 24 R~~~~p~y~i~~~LDvtn~~~~vk~~---------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~--~~~~~d~v~p~~tv 92 (219)
T COG4845 24 RLLQYPHYDINLQLDVTNFYGYVKEN---------GLSFFPALLYAVTRCANRHQEFRLRIQNG--QLGYWDNVPPMYTV 92 (219)
T ss_pred hhcccceEeeeeeeehhHHHHHHHHc---------CCcchHHHHHHHHHHhcccHHhHhhhcCC--eeEEeecCCcceEE
Confidence 55679999999999999999999886 89999999999999999999999999876 89999999999999
Q ss_pred ecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCC-CCCCC-CCCeEEEEeCCCCCCccceeccCCC---ceeEEEe
Q 010300 380 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNEL-NPADN-SGGTITLSNIGAIGGKFGAPLLNLP---EVAIIAM 454 (513)
Q Consensus 380 ~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l-~~~d~-~ggtftISnlg~~G~~~~tpii~~p---q~ail~i 454 (513)
..+++..+-++.-....++.+|.+-...-+++++++.- .++|- ......+||++|+..++++.-++.. -.+|+..
T Consensus 93 ~~~~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~ 172 (219)
T COG4845 93 FHGETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYA 172 (219)
T ss_pred EcCCCcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEee
Confidence 99887677788888999999999999988998888753 23232 2367788999997766544433321 2467888
Q ss_pred cceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHH
Q 010300 455 GRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELL 508 (513)
Q Consensus 455 G~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~l 508 (513)
|+..+ +|| +..||+++++||..|||+|+++|+..|++++++|-.+
T Consensus 173 Grf~~-----~~G----kl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 173 GRFYE-----EDG----KLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred cceec-----cCC----eEEEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 88765 689 5689999999999999999999999999999998644
No 24
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.74 E-value=6.5e-18 Score=175.46 Aligned_cols=119 Identities=24% Similarity=0.366 Sum_probs=102.7
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
.+++||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|.+|++|+.+++.+..
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~~ 82 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEVS 82 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999753211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHH
Q 010300 170 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 236 (513)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV 236 (513)
. ......++|.++.+.++ ++++....+++..+.+-..++
T Consensus 83 ~---------------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 121 (371)
T PRK14875 83 D---------------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV 121 (371)
T ss_pred c---------------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence 0 00124578999999888 899998888888777654444
No 25
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.74 E-value=6.8e-18 Score=136.61 Aligned_cols=73 Identities=27% Similarity=0.562 Sum_probs=71.5
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 91 ~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
+|++|.+|..+.+++|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999986
No 26
>PRK06748 hypothetical protein; Validated
Probab=99.64 E-value=1e-15 Score=125.46 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=61.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEc-CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQS-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vet-dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
..|+|.+|+|++||.|++||+|++||| ||+.++|+||.+|+|.++++++||.|++|++|+.|+.
T Consensus 11 ~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 11 CYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 368999999999999999999999999 9999999999999999999999999999999999964
No 27
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.53 E-value=4.3e-14 Score=151.42 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=75.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCC-eeecccEEEEEecCCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGDS 168 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~-~v~~G~~l~~i~~~~~ 168 (513)
++++||+||++|+||+|.+|+|++||.|++||+|++|||||++++++|+.+|+|.++++++|+ .|++|++|+.|+.+++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 489999999999999999999999999999999999999999999999999999999999995 7999999999976544
No 28
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.52 E-value=5.1e-14 Score=112.99 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=60.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 379999999999999999999999999999999999999999999999999999999999874
No 29
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.47 E-value=2.8e-13 Score=108.97 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=69.5
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 92 ~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
+.+|++|.++.+|++.+|++++||.|++||+|+++|++|+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999864
No 30
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.46 E-value=1.4e-13 Score=124.83 Aligned_cols=63 Identities=27% Similarity=0.343 Sum_probs=61.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
.-|++.+.+|++||+|++||+||+||+||+.++|+||.+|+|.+|++++||.|..||+|+.|+
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 469999999999999999999999999999999999999999999999999999999999986
No 31
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.42 E-value=7.1e-13 Score=105.96 Aligned_cols=63 Identities=30% Similarity=0.401 Sum_probs=60.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|.+|++++||.|++||+|+++|+||+.+++.++.+|+|.++++++|+.|..|++|+.|+
T Consensus 8 ~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 8 MAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 369999999999999999999999999999999999999999999999999999999999884
No 32
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.40 E-value=7.7e-13 Score=147.60 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=72.8
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
++|+||+|| |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.+
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 479999999 999999999999999999999999999999999999999999999999999999999999999875
No 33
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.38 E-value=1.1e-12 Score=144.81 Aligned_cols=77 Identities=26% Similarity=0.446 Sum_probs=74.5
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
++++||+||++|.||+|++|+|++||.|++||+||++||||++++++|+.+|+|.++++++|+.|++|++|+.|+..
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999753
No 34
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.35 E-value=6.6e-13 Score=93.28 Aligned_cols=38 Identities=47% Similarity=0.713 Sum_probs=34.0
Q ss_pred CcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHH
Q 010300 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 238 (513)
Q Consensus 201 ~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~ 238 (513)
++.+||+||+||+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 46799999999999999999999999999999999985
No 35
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.31 E-value=7.9e-12 Score=111.41 Aligned_cols=62 Identities=31% Similarity=0.492 Sum_probs=60.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999987
No 36
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.30 E-value=9.5e-12 Score=136.90 Aligned_cols=78 Identities=38% Similarity=0.642 Sum_probs=74.3
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
++++||++|+ |.+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.++..+.
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~ 80 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA 80 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence 4699999999 99999999999999999999999999999999999999999999999999999999999999975444
No 37
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.26 E-value=1.8e-11 Score=112.39 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=60.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999987
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.25 E-value=2.1e-11 Score=133.73 Aligned_cols=75 Identities=31% Similarity=0.527 Sum_probs=72.2
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 91 ~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+|+||+||+. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 5899999987 99999999999999999999999999999999999999999999999999999999999999754
No 39
>PRK07051 hypothetical protein; Validated
Probab=99.22 E-value=4.4e-11 Score=98.22 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=62.6
Q ss_pred EEEecCCCCCCCceEEEEE-------EEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEE
Q 010300 90 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~-------w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~ 162 (513)
.++..|. .|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 3455554 466777 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 010300 163 LV 164 (513)
Q Consensus 163 i~ 164 (513)
++
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 40
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.20 E-value=3.4e-11 Score=117.57 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=55.1
Q ss_pred EEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 109 WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 109 w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
|+|++||.|++||+||+||+||+.++|+|+.+|+|.+|++++|+.|..|++|+.|+
T Consensus 218 w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 218 PFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred ceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999985
No 41
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.20 E-value=7.8e-11 Score=92.28 Aligned_cols=62 Identities=32% Similarity=0.485 Sum_probs=59.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
.+|+|.+|++++||.|++||+|++++++|...+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999875
No 42
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.18 E-value=5.8e-11 Score=109.71 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=58.8
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 103 eg~i~~-------w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
-|++.. |+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 577765 99999999999999999999999999999999999999999999999999999874
No 43
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.12 E-value=1.6e-10 Score=106.75 Aligned_cols=62 Identities=29% Similarity=0.449 Sum_probs=58.3
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 103 eg~i~~-------w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
-|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 466665 99999999999999999999999999999999999999999999999999999874
No 44
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.12 E-value=5.3e-10 Score=87.64 Aligned_cols=73 Identities=34% Similarity=0.651 Sum_probs=70.2
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 91 ~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
++.+|+++.+..+|+|.+|++++|+.|..|++++.++++|+...+.++.+|++.+..+.+|+.+..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999874
No 45
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.08 E-value=2.9e-10 Score=124.98 Aligned_cols=64 Identities=27% Similarity=0.412 Sum_probs=61.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
-.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 3799999999999999999999999999999999999999999999999999999999999964
No 46
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.97 E-value=1.1e-09 Score=129.76 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=61.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 469999999999999999999999999999999999999999999999999999999999874
No 47
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.90 E-value=2.1e-09 Score=118.51 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=57.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l 160 (513)
..|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999875
No 48
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.89 E-value=3.9e-09 Score=116.56 Aligned_cols=62 Identities=31% Similarity=0.408 Sum_probs=60.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
..|+|++|+|++||.|++||+||++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999987
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.85 E-value=4.6e-09 Score=123.50 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=60.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 369999999999999999999999999999999999999999999999999999999999884
No 50
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.79 E-value=1.4e-08 Score=112.37 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=61.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 478999999999999999999999999999999999999999999999999999999999985
No 51
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.71 E-value=2.2e-08 Score=106.49 Aligned_cols=63 Identities=27% Similarity=0.329 Sum_probs=61.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|+.+.|++|+.|.+||+|+.+|.|||++.|+||.+|+|.++.+.+|+.|..|++|+.++
T Consensus 582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 379999999999999999999999999999999999999999999999999999999999986
No 52
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.67 E-value=4.5e-08 Score=115.69 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=60.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
.|+|++|+|++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|+.|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 69999999999999999999999999999999999999999999999999999999999985
No 53
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.48 E-value=1.6e-07 Score=103.03 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=60.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
.|+|+++.|++||+|++||+|+.+|+|||+..|.||.+|+|.+++|..||.|..|+.|..++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 68999999999999999999999999999999999999999999999999999999998875
No 54
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.27 E-value=1e-06 Score=95.04 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=60.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|+++.|++|++|++||+||.+.+||+++.|.||.+|+|+++++..|+.+..|+.+++++
T Consensus 1113 MpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1113 MPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 379999999999999999999999999999999999999999999999999999999999886
No 55
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.13 E-value=3.6e-06 Score=71.50 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=50.6
Q ss_pred eEEEecCCCCCCCceEEEEE-EEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCe
Q 010300 89 IVDVPLAQTGEGIAECELLK-WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 153 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~-w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~ 153 (513)
...+-|-+.+..+ -|+|.. |++++|+.|++||+|++||++|+..+|.||.+|+|.++..+.++.
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 3445555555432 566777 666679999999999999999999999999999999997766543
No 56
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.00 E-value=4.9e-06 Score=87.77 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
-|.|.+++||+||.|++||.|+.++.||+...+++|.+|+|..+.++.|++|..|.+|..++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 57899999999999999999999999999999999999999999999999999999998764
No 57
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.87 E-value=1.7e-05 Score=91.97 Aligned_cols=66 Identities=26% Similarity=0.548 Sum_probs=61.4
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
-.-|++++|+|+.|+.|..||+-+|||.|||.|.+.++.+|+| +...+||+.+..|++|+.++-++
T Consensus 691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 3689999999999999999999999999999999999999999 55689999999999999998654
No 58
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.82 E-value=3.1e-05 Score=67.34 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=39.3
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCC
Q 010300 104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 150 (513)
Q Consensus 104 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~ 150 (513)
|.|+.... ++|+.|++||++++||++|+..+|.||.+|+|.++.-+.
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l 77 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL 77 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence 34444433 669999999999999999999999999999999996443
No 59
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.75 E-value=0.00011 Score=78.53 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=58.6
Q ss_pred ceEEEEEEE-cCCCCeecCCCeEEEEEcC------------------------------------------------Ccc
Q 010300 102 AECELLKWF-VKEGDEIEEFQPLCAVQSD------------------------------------------------KAT 132 (513)
Q Consensus 102 ~eg~i~~w~-v~~Gd~V~~gd~l~~vetd------------------------------------------------K~~ 132 (513)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 589999998 9999999999999999831 013
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|.||++|+|.+..+.+|+.|..|++|+.|...+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 569999999999999999999999999999976543
No 60
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.74 E-value=5.2e-05 Score=66.35 Aligned_cols=57 Identities=23% Similarity=0.230 Sum_probs=42.8
Q ss_pred EEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
..+-|-+.+.. .-|.|+.+.. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 19 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 19 VRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred EEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 33444444332 2344444444 669999999999999999999999999999999985
No 61
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.71 E-value=9.3e-05 Score=76.47 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=32.3
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|.||++|+|..+.+++|+.|..|++|+.|.+.+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence 358999999999999999999999999999986543
No 62
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.64 E-value=6.5e-05 Score=68.53 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=50.0
Q ss_pred eEEEecCCCCCCCceEEEEEEEcC-CCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVK-EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 150 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~-~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~ 150 (513)
...+-|-+.... .-|.|+.+.++ +|+.|++||+++.||++|+..+|.||.+|+|.++....
T Consensus 30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l 91 (144)
T PRK13380 30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEAL 91 (144)
T ss_pred EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhh
Confidence 345555555443 35778888886 89999999999999999999999999999999987554
No 63
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.62 E-value=0.00017 Score=74.25 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=57.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------------- 131 (513)
..|.|.+++|++||.|++||+|+++++...
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999986310
Q ss_pred --------------------ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 --------------------~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
...|.||++|+|.++.+++|+.|..|++|+.|...
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 13489999999999999999999999999988754
No 64
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.58 E-value=0.00013 Score=74.47 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=57.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------------- 131 (513)
.+|.|.++++++||.|++||+|+.+++...
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999999975321
Q ss_pred ---------------------ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ---------------------~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
...|.||.+|+|..+.+.+|+.+..|++|+.|...
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 23599999999999999999999999999999754
No 65
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.55 E-value=6.2e-05 Score=78.43 Aligned_cols=41 Identities=54% Similarity=0.780 Sum_probs=38.2
Q ss_pred cccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHh
Q 010300 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (513)
Q Consensus 202 ~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~ 242 (513)
..+||++|++|+++|||++.|+|||++|||+++||++|...
T Consensus 6 ~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 6 LRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred ccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 45789999999999999999999999999999999999764
No 66
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.54 E-value=0.00019 Score=74.89 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=31.5
Q ss_pred eeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 134 ~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.|.||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus 210 ~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 210 TVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred EEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 4899999999999999999999999999998654
No 67
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.54 E-value=0.00019 Score=64.14 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=48.0
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe---eCCCCeee---ccc-EEEEEecC
Q 010300 104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL---HAPGNIVK---VGE-TLLKLVVG 166 (513)
Q Consensus 104 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~---~~~g~~v~---~G~-~l~~i~~~ 166 (513)
|.|+.+. .++|++|++||+++.||++|...+|.||.+|+|.++. ....+.+. -|+ -|+.|...
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS 107 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence 3444333 3679999999999999999999999999999999994 44444444 444 77777654
No 68
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.39 E-value=0.00042 Score=73.62 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|.||++|+|..+.+++|+.|..|++|+.|.+.+.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCCc
Confidence 369999999999999999999999999999986543
No 69
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.34 E-value=0.00043 Score=73.26 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=57.7
Q ss_pred CCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------
Q 010300 96 QTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------- 131 (513)
Q Consensus 96 ~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------- 131 (513)
.|+.- ..|+|.++++++||.|++||+|+.+++...
T Consensus 65 ~l~~~-v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 65 EVRAR-VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEecc-CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34432 579999999999999999999999986411
Q ss_pred ---------------------------ceeeecCCCeEEEEEeeCCCCeeecc--cEEEEEecC
Q 010300 132 ---------------------------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG 166 (513)
Q Consensus 132 ---------------------------~~~i~a~~~G~v~~i~~~~g~~v~~G--~~l~~i~~~ 166 (513)
...|.||++|+|.+.++++|+.|..| ++|+.|...
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 12489999999999999999999986 588888654
No 70
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.30 E-value=0.00043 Score=71.68 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=31.2
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 4699999999999999999999999999999754
No 71
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.27 E-value=0.00046 Score=73.39 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=54.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------------- 131 (513)
..|.|.++++++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 579999999999999999999999985321
Q ss_pred ---------------------ceeeecCCCeEEEEEeeCCCCeeecccE--EEEEecC
Q 010300 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGET--LLKLVVG 166 (513)
Q Consensus 132 ---------------------~~~i~a~~~G~v~~i~~~~g~~v~~G~~--l~~i~~~ 166 (513)
...|.||++|+|.+.++++|+.|..|++ |+.|...
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence 1238999999999999999999999985 6666543
No 72
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.26 E-value=0.00036 Score=51.90 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=27.9
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 5678888888888888888888888888888754
No 73
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.22 E-value=0.0008 Score=71.27 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=55.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 130 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK--------------------------------------------------- 130 (513)
..|.|.++++++||.|++||+|++|+...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 58999999999999999999999998541
Q ss_pred --------------------cceeeecCCCeEEEEEeeCCCCeeeccc--EEEEEecC
Q 010300 131 --------------------ATIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVVG 166 (513)
Q Consensus 131 --------------------~~~~i~a~~~G~v~~i~~~~g~~v~~G~--~l~~i~~~ 166 (513)
....|.||++|+|.+.++.+|+.|..|+ +|+.|...
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence 0135999999999999999999999985 68877654
No 74
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.16 E-value=0.00042 Score=51.56 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=27.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
..|+|.+|+|++||.|++||+|+++++...
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 489999999999999999999999987643
No 75
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.13 E-value=0.00052 Score=61.38 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=38.6
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC
Q 010300 104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (513)
Q Consensus 104 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~ 149 (513)
|.|..+. .++|++|++||++|.||++|+..+|.||.+|+|.++.-.
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 3443332 357999999999999999999999999999999998644
No 76
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.05 E-value=0.0012 Score=70.74 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=54.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------------- 131 (513)
..|.|.++++++||.|++||+|++|+....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 589999999999999999999999975310
Q ss_pred ---------------------ceeeecCCCeEEEEEeeCCCCeeeccc--EEEEEec
Q 010300 132 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV 165 (513)
Q Consensus 132 ---------------------~~~i~a~~~G~v~~i~~~~g~~v~~G~--~l~~i~~ 165 (513)
...|.||++|+|....+..|+.|..|+ +|+.|..
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 125899999999999999999999985 6777654
No 77
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.00 E-value=0.0017 Score=68.34 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=54.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------------- 131 (513)
..|.|.++++++||.|++||+|++++....
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 469999999999999999999999986310
Q ss_pred -----------------------------------ceeeecCCCeEEEEEeeCCCCeeecc---cEEEEEecC
Q 010300 132 -----------------------------------TIEITSRYKGKVAQLLHAPGNIVKVG---ETLLKLVVG 166 (513)
Q Consensus 132 -----------------------------------~~~i~a~~~G~v~~i~~~~g~~v~~G---~~l~~i~~~ 166 (513)
...|.||++|+|..+.+..|+.|..| ++|+.|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 220 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecC
Confidence 12699999999999999999999766 468887654
No 78
>PRK12784 hypothetical protein; Provisional
Probab=96.81 E-value=0.0063 Score=48.75 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=59.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcce-eeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
-.|+|.++++.+++.|-+.++|+-|+++.... .|.--.+|.|.-+.+++||.|..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 47999999999999999999999999876555 478899999999999999999999999999764
No 79
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.76 E-value=0.0022 Score=56.90 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=34.1
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 104 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
|.|+.+. .++|++|++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 4444443 3559999999999999999999999999999999985
No 80
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.73 E-value=0.0012 Score=67.70 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=47.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------------- 131 (513)
.+|.| +|+|++||.|++||+|++++++..
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 47999 999999999999999999984432
Q ss_pred -----------------ce----------eeecCCCeEEE-------------------------EEeeCCCCeeecccE
Q 010300 132 -----------------TI----------EITSRYKGKVA-------------------------QLLHAPGNIVKVGET 159 (513)
Q Consensus 132 -----------------~~----------~i~a~~~G~v~-------------------------~i~~~~g~~v~~G~~ 159 (513)
.. .|.||++|+|. ++.+.+|+.|..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~ 186 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP 186 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence 01 28999999999 999999999999999
Q ss_pred EEEEecC
Q 010300 160 LLKLVVG 166 (513)
Q Consensus 160 l~~i~~~ 166 (513)
|+.|...
T Consensus 187 l~~i~~~ 193 (328)
T PF12700_consen 187 LFTIADL 193 (328)
T ss_dssp SEEEEEE
T ss_pred eeeeccC
Confidence 9999765
No 81
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.73 E-value=0.0031 Score=65.02 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=28.2
Q ss_pred eeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 134 ~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.|.||++|+|..+.+.+|+.|.. ++|+.|.+.+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 46799999999999999999986 7888887543
No 82
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.57 E-value=0.006 Score=60.42 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+|.+.. .++.||.|++||+|+.|+. .+|.||.+|+|.-+ +++|-.|+.|.-|+.|++-.
T Consensus 172 ~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred CeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCC
Confidence 455444 8999999999999999974 79999999999774 89999999999999998754
No 83
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.45 E-value=0.0054 Score=48.91 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=32.7
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|.||++|+|.++++++||.|..||+|+.++....
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~ 38 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKM 38 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence 358999999999999999999999999999987653
No 84
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.27 E-value=0.0045 Score=55.12 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=44.0
Q ss_pred eEEEecCCCCCCCceEEEEEEE-cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 89 IVDVPLAQTGEGIAECELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
+..|-|-+.+.. .-|.|+-+. .++|++|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 344545444443 245555443 4679999999999999999999999999999998874
No 85
>PRK06748 hypothetical protein; Validated
Probab=95.87 E-value=0.013 Score=48.40 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=30.9
Q ss_pred eeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 134 ~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.|.||..|.|.++++++||.|..||+|+.++.
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 48999999999999999999999999999998
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.73 E-value=0.031 Score=59.34 Aligned_cols=32 Identities=38% Similarity=0.530 Sum_probs=29.1
Q ss_pred eecCCCeEEEEEee-CCCCeeecccEEEEEecC
Q 010300 135 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG 166 (513)
Q Consensus 135 i~a~~~G~v~~i~~-~~g~~v~~G~~l~~i~~~ 166 (513)
|.||++|+|..+.+ .+|+.|..|++|+.|.+.
T Consensus 274 i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 274 IRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred EECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 89999999999876 799999999999999764
No 87
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=95.60 E-value=0.019 Score=57.09 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=30.0
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
|.||++|+|..+.+.+|+.|..|++|+.|.+.
T Consensus 91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 91 VRSPFDGYITQKSVTLGDYVAPQAELFRVADL 122 (265)
T ss_pred EECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence 69999999999999999999999999998754
No 88
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.13 E-value=0.041 Score=43.59 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=32.2
Q ss_pred eeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 134 ~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
.|.||..|+|.++++++|+.|..|++|+.++....
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~ 37 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKM 37 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCC
Confidence 58899999999999999999999999999987653
No 89
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=94.99 E-value=0.037 Score=42.63 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=29.9
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 68999999999999999999999999999754
No 90
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.93 E-value=0.074 Score=54.48 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=47.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc---CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
.+=+....++.||.|++||+|++|=. +....++.||.+|+|.-+ ...-.|..|+.|+.|
T Consensus 236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~--~~~p~v~~G~~l~~i 297 (298)
T cd06253 236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL--REYPLVYEGSLVARI 297 (298)
T ss_pred CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe--ecCCeecCCceEEEe
Confidence 45577788999999999999999953 345678999999999664 455678888888876
No 91
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=94.91 E-value=0.041 Score=47.21 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=37.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
-|.-.+-.|++||+|++||.|++.+ +-....|-|+.+|+|..|.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE 81 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence 4555667899999999999999997 4668899999999999984
No 92
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.74 E-value=0.04 Score=50.10 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=33.6
Q ss_pred cceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 131 ~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
....|.||..|++-+++|++||.|+.||+|++|+...
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMK 105 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMK 105 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeee
Confidence 3567999999999999999999999999999999653
No 93
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=94.63 E-value=0.079 Score=55.39 Aligned_cols=34 Identities=35% Similarity=0.407 Sum_probs=31.7
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
|.||.+|+|.+..+..|+.|..|++|+.+.+.+.
T Consensus 211 IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~ 244 (352)
T COG1566 211 IRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDS 244 (352)
T ss_pred EECCCCceEEeecccCCCeecCCCceEEEecccc
Confidence 8999999999999999999999999999987554
No 94
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.62 E-value=0.11 Score=53.05 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=43.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc--CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
+=+.++.++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence 3456679999999999999999953 12346899999999954 3455567778877765
No 95
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.31 E-value=0.15 Score=52.74 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=46.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc----CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
.+=+....++.||.|++||+|++|-. .....+|.||.+|+|.-. ...-.|..|+.|+.|.
T Consensus 251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVLA 314 (316)
T ss_pred CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEEe
Confidence 45577788999999999999999854 245668999999999654 3334577888887764
No 96
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=94.27 E-value=0.12 Score=54.36 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=46.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEc----CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
..|=+.+..++.||.|++||+|++|-. +....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 295 p~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I 358 (359)
T cd06250 295 PAGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI 358 (359)
T ss_pred CCCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence 355677889999999999999999842 22334469999999955 4566678888888866
No 97
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=93.80 E-value=0.17 Score=52.42 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=46.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc----CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
.+=+....++.||.|++||+|++|=. .....++.||.+|+|.-. ...-.|..|+.|+.|
T Consensus 262 ~~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~--~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 262 DDGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR--HFPGLIKSGDCIAVL 324 (325)
T ss_pred CCeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE--eCCCccCCCCEEEEe
Confidence 34456788999999999999999953 234678999999999764 445678888888765
No 98
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.72 E-value=0.11 Score=46.64 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=33.6
Q ss_pred cceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 131 ~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
-...|.||.+|+|.++++.+||.|..|++|+.++...
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK 96 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK 96 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence 3567999999999999999999999999999998653
No 99
>PF13437 HlyD_3: HlyD family secretion protein
Probab=93.64 E-value=0.1 Score=44.31 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=20.3
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus 2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 55666666666666666666666666666543
No 100
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.62 E-value=0.14 Score=52.76 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=40.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEc---CCcceeeecCCCeEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~~i~a~~~G~v~~i~ 147 (513)
.++=+++.+++.||.|++||+|+.|-. .+...||.|+.+|+|....
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r 310 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR 310 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe
Confidence 467789999999999999999998865 4789999999999998774
No 101
>PRK07051 hypothetical protein; Validated
Probab=93.34 E-value=0.11 Score=42.36 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=25.2
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEE
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-.+|+|.+|++++||.|+.||+|++++
T Consensus 53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 53 EAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 369999999999999999999999986
No 102
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.01 E-value=0.18 Score=50.21 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=37.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 151 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g 151 (513)
.|..-+..|+|||+|+.||+|++-- .--.+-+.||.+|+|.+|.-.+-
T Consensus 37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 37 PGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred CCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecCCC
Confidence 3445778999999999999999631 22456689999999999977543
No 103
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.01 E-value=0.13 Score=41.22 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=29.5
Q ss_pred eeecCCCeEEEE------EeeCCCCeeecccEEEEEecCCC
Q 010300 134 EITSRYKGKVAQ------LLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 134 ~i~a~~~G~v~~------i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
+|.+|.-|...+ +++++|+.|..||+|+.++....
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~ 42 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKM 42 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCcc
Confidence 577888777555 99999999999999999987643
No 104
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.98 E-value=0.3 Score=58.70 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=59.3
Q ss_pred CceEEEecCCCCCCCc----------eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeec
Q 010300 87 SGIVDVPLAQTGEGIA----------ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKV 156 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~~----------eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~ 156 (513)
++...|++-.+|+-.. .|+..++.++.++.+..++.....+. .-...|.||..|+|.++++++||.|+.
T Consensus 1020 g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~~ 1098 (1143)
T TIGR01235 1020 GKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVNK 1098 (1143)
T ss_pred CcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeCC
Confidence 3444555556655332 34667777888888777766555432 233569999999999999999999999
Q ss_pred ccEEEEEecCCC
Q 010300 157 GETLLKLVVGDS 168 (513)
Q Consensus 157 G~~l~~i~~~~~ 168 (513)
||+|+.++...-
T Consensus 1099 Gd~L~~iEamKm 1110 (1143)
T TIGR01235 1099 GDPLVVLEAMKM 1110 (1143)
T ss_pred CCEEEEEEecce
Confidence 999999997644
No 105
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.85 E-value=0.16 Score=46.84 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=32.9
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
...|.||..|+|.++++++||.|..||+|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 356999999999999999999999999999998654
No 106
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=92.62 E-value=0.087 Score=53.22 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=24.3
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|.++.+|+|.+|+|++|+.|+.|++|+.|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 4688999999999999999999999999999864
No 107
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.59 E-value=0.15 Score=53.20 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=32.6
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.+.|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 57899999999999999999999999999999854
No 108
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=92.59 E-value=0.18 Score=46.30 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=35.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCccee-eecCCCeEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLL 147 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~-i~a~~~G~v~~i~ 147 (513)
.||..+-..+.+||.|.+||.|+-+.|-|..+- ++||.+|+|.-+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 478888899999999999999999999998765 9999999997664
No 109
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.55 E-value=0.17 Score=52.18 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=36.2
Q ss_pred EEEcCCcceeeecCCC---eEEEEEeeCCCCeeecccEEEEEecC
Q 010300 125 AVQSDKATIEITSRYK---GKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 125 ~vetdK~~~~i~a~~~---G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.|+...-...|.++.+ |+|.+++|++||.|+.|++|+.|+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 4555555567889999 99999999999999999999999865
No 110
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.45 E-value=0.25 Score=50.29 Aligned_cols=56 Identities=25% Similarity=0.251 Sum_probs=39.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc--CCcceeeecCCCeEEEEEeeCCCCeeecccEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l 160 (513)
.+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+.. .-.|..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCcc
Confidence 45577788999999999999999832 23456799999999966532 2345555544
No 111
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.02 E-value=0.16 Score=52.43 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=32.5
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.+.|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 57899999999999999999999999999999754
No 112
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=91.81 E-value=0.22 Score=53.35 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=44.9
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
-..++.|+.-..-+....|+. .-.+.|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 64 v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 64 AATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 334445554444455677775 3567899999999999999999999999999999864
No 113
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=91.59 E-value=3.3 Score=44.91 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCeEEEEeCCCCCC-cc----cee-ccCCCc---eeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHH-HH
Q 010300 424 GGTITLSNIGAIGG-KF----GAP-LLNLPE---VAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV-AK 493 (513)
Q Consensus 424 ggtftISnlg~~G~-~~----~tp-ii~~pq---~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~a-a~ 493 (513)
++||.|||+|.+.. .. ..- ++..++ .+.+.+.-+.- .+| -|++++++=.-+++-... -.
T Consensus 403 ~~t~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS~-----~~G------~L~i~~s~~~~~~~~~~~~~~ 471 (480)
T PF07247_consen 403 RSTFEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIST-----KGG------GLNISISWQEGIVEDEEMEDE 471 (480)
T ss_pred CCcEEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEEc-----CCC------ceEEEEEEeCCcccccchHHH
Confidence 58999999999873 10 001 111111 12233333321 334 488999998888887666 48
Q ss_pred HHHHHHHHh
Q 010300 494 FCNEWKQLI 502 (513)
Q Consensus 494 Fl~~lk~~L 502 (513)
|++.|++.|
T Consensus 472 ~~~~~~~~~ 480 (480)
T PF07247_consen 472 FMELFKQNL 480 (480)
T ss_pred HHHHHHhhC
Confidence 999988764
No 114
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=91.26 E-value=0.29 Score=51.79 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=44.7
Q ss_pred EcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.++.|+....-+..+.|+..+ ...|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 445555555555667777553 67899999999999999999999999999999754
No 115
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=90.89 E-value=0.23 Score=50.67 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=28.9
Q ss_pred eEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 122 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 122 ~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.-+.|+. -...+.++.+|+| ++++++|+.|..|++|+.++..
T Consensus 13 ~~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 13 ASGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 3445554 4567999999999 9999999999999999999864
No 116
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=90.89 E-value=0.33 Score=52.67 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=32.9
Q ss_pred cceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 131 ~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
-...|.++.+|+|.+|+|++||.|+.|++|+.+++..
T Consensus 58 ~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 58 ILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred ceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 3457889999999999999999999999999997653
No 117
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=90.76 E-value=0.41 Score=50.38 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=43.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.-+.++.|+.-..=..-+.|+.. -...|.++.+|.|.++++++|+.|+.|++|+.++..
T Consensus 36 v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 36 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred eEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 344445555543333344556544 345899999999999999999999999999999753
No 118
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=90.57 E-value=5.8 Score=42.53 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=91.8
Q ss_pred EEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCC----
Q 010300 308 HYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH---- 383 (513)
Q Consensus 308 ~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~---- 383 (513)
+....+++..+.+..+.. +.|++++++-|++.+|.++ ++.+ + + .....+.+++.|+.-.
T Consensus 231 ~~~~~~~~~~l~~~a~~~---------g~T~ndvllaa~~~al~~~--~~~~---~--~-~~~~~i~~~~pv~~R~~~~~ 293 (446)
T TIGR02946 231 FAAQSLPLADVKAVAKAF---------GVTINDVVLAAVAGALRRY--LEER---G--E-LPDDPLVAMVPVSLRPMEDD 293 (446)
T ss_pred EEeeccCHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHH--HHHc---C--C-CCCCceEEEEeeeccccccC
Confidence 345677777777766554 7899999999999999876 2211 1 1 1123466777776311
Q ss_pred ---C----eEeeeeecCCCCCHHHHHHHHHHHHHHhhcCC-------------CCCC-----------C--CCCCeEEEE
Q 010300 384 ---G----LAVPNIKNVQSLSILEITKELSRLQQLAKDNE-------------LNPA-----------D--NSGGTITLS 430 (513)
Q Consensus 384 ---G----l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~-------------l~~~-----------d--~~ggtftIS 430 (513)
| .+...+. .+..+..+...++++....+++.. +.|. . ...-++++|
T Consensus 294 ~~~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~S 372 (446)
T TIGR02946 294 SEGGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVIS 372 (446)
T ss_pred CCCCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEe
Confidence 1 2221122 233344455566655555554431 1110 0 012478999
Q ss_pred eCCCCCC---------ccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHH
Q 010300 431 NIGAIGG---------KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQL 501 (513)
Q Consensus 431 nlg~~G~---------~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~ 501 (513)
|+|.... ..+.++..+..-..++++-... +| .|.+++++|-.++.. ..+|.+.|++.
T Consensus 373 Nvpg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~sy------~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~ 438 (446)
T TIGR02946 373 NVPGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTSY------NG------QLDFGLLADRDAVPD--PQELADALEAA 438 (446)
T ss_pred CCCCCCcccEecCeeEEEeeccccccCCCeEEEEEEec------CC------eEEEEEeechhhCCC--HHHHHHHHHHH
Confidence 9985421 1122222211112334433332 34 688999999988874 77788888877
Q ss_pred hhCH
Q 010300 502 IENP 505 (513)
Q Consensus 502 Le~P 505 (513)
|++-
T Consensus 439 l~~l 442 (446)
T TIGR02946 439 LEEL 442 (446)
T ss_pred HHHH
Confidence 7654
No 119
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=90.56 E-value=0.19 Score=50.77 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=22.8
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCCcce
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATI 133 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ 133 (513)
...|.|.+++|++||.|++||+|++++.-....
T Consensus 7 ~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~a 39 (305)
T PF00529_consen 7 LVGGIVTEILVKEGQRVKKGQVLARLDPTDYEA 39 (305)
T ss_dssp SS-EEEEEE-S-TTEEE-TTSECEEE--HHHHH
T ss_pred CCCeEEEEEEccCcCEEeCCCEEEEEEeeccch
Confidence 368999999999999999999999998544333
No 120
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.30 E-value=0.29 Score=52.94 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=38.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEee
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~ 148 (513)
.|.--+..|++||+|+.||+|++-. .-..+.+.||.+|+|..|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~-~~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDK-KNPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecC-CCceEEEEcCCCeEEEEEec
Confidence 4566778999999999999999875 33678899999999999943
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.25 E-value=0.42 Score=50.66 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=36.9
Q ss_pred EEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 125 AVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 125 ~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+|........|.++.+|+|.+++|++||.|+.|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 4556666677889999999999999999999999999998653
No 122
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.21 E-value=0.39 Score=51.47 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=32.6
Q ss_pred cceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 131 ~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
-...|.++.+|+|.+++|++|+.|+.|++|+.|+..
T Consensus 57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 344899999999999999999999999999999865
No 123
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=90.13 E-value=0.43 Score=50.48 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=42.9
Q ss_pred EcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.++.|+.-..-...+.|+.+ -...|.++.+|+|.++++++||.|+.||+|+.|+..
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 34444433334455667654 356899999999999999999999999999999754
No 124
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=90.04 E-value=0.4 Score=48.76 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=32.2
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+..|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 46799999999999999999999999999999753
No 125
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=89.74 E-value=0.32 Score=50.06 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.6
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.|.++.+|.|.++++++||.|+.||+|+.++..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 4599999999999999999999999999999864
No 126
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=89.56 E-value=0.33 Score=51.66 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.7
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.+.|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 67899999999999999999999999999999864
No 127
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=89.29 E-value=0.34 Score=39.25 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=22.3
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+.-+.=+.++++.||.|++||+||+|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 455556789999999999999999987654
No 128
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=88.72 E-value=0.51 Score=48.74 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=34.7
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCC
Q 010300 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN 152 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~ 152 (513)
..+|++||.|++|++|+|-- -.-.+-++||.+|+|..|+-.+--
T Consensus 42 ~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~KR 85 (447)
T COG1726 42 SMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGEKR 85 (447)
T ss_pred cceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeecccce
Confidence 45799999999999999742 124567999999999999765543
No 129
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=88.69 E-value=0.48 Score=49.03 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.5
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.+.|.++.+|+|.++++++||.|+.|++|+.++..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 56899999999999999999999999999999754
No 130
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.67 E-value=1.5 Score=49.24 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=33.0
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
-+|.||..|+|.++++++||.|+.||+|+.++...-
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamKm 561 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKM 561 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecce
Confidence 369999999999999999999999999999997654
No 131
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=88.14 E-value=0.52 Score=51.05 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=37.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEee
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~ 148 (513)
.|.--+..|++||+|++||+|++-... ....+.||.+|+|..|..
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 455567889999999999999965432 568899999999999943
No 132
>PF13437 HlyD_3: HlyD family secretion protein
Probab=87.96 E-value=0.89 Score=38.48 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=25.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
.+|.|..+.+++|+.|..|++|++|..
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 589999999999999999999999974
No 133
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=87.10 E-value=1.1 Score=48.12 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=43.0
Q ss_pred EcCCCCeecCCCeEEEEEcCC-cceeeecCCCeEEEEEe-eCCCCeeecccEEEEEecC
Q 010300 110 FVKEGDEIEEFQPLCAVQSDK-ATIEITSRYKGKVAQLL-HAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetdK-~~~~i~a~~~G~v~~i~-~~~g~~v~~G~~l~~i~~~ 166 (513)
.++.++.-..-+..+.|+.+. -...|.++.+|+|.+++ +.+||.|+.||+|+.|+..
T Consensus 100 ~v~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 100 TVTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EEEEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence 344444333344556777554 45679999999999998 9999999999999999854
No 134
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=87.03 E-value=0.62 Score=49.59 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=36.3
Q ss_pred EEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 123 LCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 123 l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
...|+. .-..+|.++.+|+|.++++++||.|+.||+|+.|+..
T Consensus 57 ~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 57 PGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 345553 3367899999999999999999999999999999754
No 135
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=86.87 E-value=6.2 Score=38.69 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=27.1
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhhCHH
Q 010300 474 IMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 506 (513)
Q Consensus 474 ~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~ 506 (513)
...+-+.+||-++||.-...|+++|.+++++..
T Consensus 128 ~~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 128 EYFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccccccccccccchhhhhhhHHhhhccc
Confidence 356788899999999999999999999887765
No 136
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=86.72 E-value=0.67 Score=42.95 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.5
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEE
Q 010300 100 GIAECELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-.+|+|.+|+++.||.|+.||+|++|+
T Consensus 129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 129 AEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 3469999999999999999999999985
No 137
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=86.48 E-value=2.3 Score=37.91 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.8
Q ss_pred EEeeCCCCeeecccEEEEEec
Q 010300 145 QLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 145 ~i~~~~g~~v~~G~~l~~i~~ 165 (513)
+.++++||.|..|++|+.++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EEEecCCCEEcCCCEEEEEcH
Confidence 347889999999999999874
No 138
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=86.43 E-value=0.58 Score=43.06 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=38.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~ 149 (513)
+..++. =++|-.|.+||.++-+|+-|+.-+|.+|.+|.|.+|.-+
T Consensus 82 vv~veL-Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~ 126 (172)
T KOG3373|consen 82 VVYVEL-PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK 126 (172)
T ss_pred eEEEEc-CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence 444554 378999999999999999999999999999999998533
No 139
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=86.33 E-value=0.73 Score=49.78 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=41.7
Q ss_pred CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
.....|.|.+- -|.-.+..|++||+|+.||+|++.+ ......+.||.+|+|.+|.
T Consensus 28 p~~v~i~l~~~-----~g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 28 PQELIVPLSQH-----IGAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCEEEEECccC-----CCCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 33445555542 2344567899999999999999983 4468899999999999874
No 140
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=86.21 E-value=0.87 Score=45.46 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=32.1
Q ss_pred eeeecCCCeEEEE-------EeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQ-------LLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~-------i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|.||..|++.+ +++++||.|..||+|+.|+....
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm 240 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL 240 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence 3489999999999 59999999999999999997654
No 141
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=86.18 E-value=2.2 Score=43.53 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=27.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcC--CcceeeecCCCeEEEEE
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQSD--KATIEITSRYKGKVAQL 146 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~vetd--K~~~~i~a~~~G~v~~i 146 (513)
+=+.+..++.||.|++||+|++|-.- ....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44566677788888888888877411 12345677777777554
No 142
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=86.06 E-value=0.82 Score=49.58 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=26.6
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
..+|+|.+|++++||.|..|++|++|+.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 36899999999999999999999999854
No 143
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=85.89 E-value=0.84 Score=42.22 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=25.0
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEE
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-.+|+|++|+++.||.|..||+|++|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 369999999999999999999999985
No 144
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=85.45 E-value=1.9 Score=40.45 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.1
Q ss_pred EeeCCCCeeecccEEEEEecC
Q 010300 146 LLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 146 i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.++++||.|+.||+|+.++-+
T Consensus 106 ~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 106 RIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred EEecCCCEEeCCCEEEEEcHH
Confidence 378899999999999999753
No 145
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=85.32 E-value=1.8 Score=38.98 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=15.0
Q ss_pred EeeCCCCeeecccEEEEEec
Q 010300 146 LLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 146 i~~~~g~~v~~G~~l~~i~~ 165 (513)
.++++||.|+.||+|+.++.
T Consensus 88 ~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 88 TLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp ESS-TTSEE-TTEEEEEE-H
T ss_pred EEEeCCCEEECCCEEEEEcH
Confidence 37889999999999999974
No 146
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=85.29 E-value=2.5 Score=48.41 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=41.3
Q ss_pred CCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 86 ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 86 ~~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
.....-|+|.+ .-|.--+..|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus 33 ~p~~~~ipl~q-----hiG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 33 LPQRLVIPLKQ-----HIGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCEEEEECcc-----CCCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 34445555554 23444567899999999999999663 3357899999999999974
No 147
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=85.25 E-value=2.3 Score=44.07 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=26.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
..|+|.+++|++||+|+.|+.|+.|++.
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 5799999999999999999999999865
No 148
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=84.50 E-value=0.95 Score=48.53 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=27.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcc
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKAT 132 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~ 132 (513)
..|.|.+++|++||.|++||+|++|++....
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~~ 95 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQPELR 95 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcHHHH
Confidence 5799999999999999999999999876443
No 149
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=83.80 E-value=1.3 Score=49.66 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=33.8
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
..|.||..|.|.++++++||.|..|++|+.++...-+
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme 554 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKME 554 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccce
Confidence 4799999999999999999999999999999976543
No 150
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=83.66 E-value=2.4 Score=47.57 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=33.3
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
...|.||..|+|.++++++||.|..||+|+.++...-
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKm 560 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKM 560 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCce
Confidence 4479999999999999999999999999999986543
No 151
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=83.59 E-value=2.8 Score=37.21 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.6
Q ss_pred EEEEeeCCCCeeecccEEEEEec
Q 010300 143 VAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 143 v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
=-+.++++||.|+.||+|+.++.
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEcH
Confidence 34667999999999999999974
No 152
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=83.45 E-value=3 Score=42.16 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=47.2
Q ss_pred eEEEEEEEcCCCCeecCCCeE--EEEE-cC-CcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 103 ECELLKWFVKEGDEIEEFQPL--CAVQ-SD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l--~~ve-td-K~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
.+=+....++.||.|++||+| .++- .. ....++.+|.+|+| +...+.-.|..|+.|+.+.
T Consensus 227 ~~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 227 AGGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp SSEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred ccEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence 445678999999999999999 5443 22 33458999999999 4567788899999998875
No 153
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=83.40 E-value=2.4 Score=43.02 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 119 EFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 119 ~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.-.....++. .-...+.++..|.|.++++++||.|..|++|+.++..
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 3334445554 3334788889999999999999999999999999873
No 154
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.40 E-value=1.1 Score=48.73 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=27.6
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCCcc
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKAT 132 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~ 132 (513)
...|.|.+++|++||.|++||+|+.++.....
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~~ 96 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGNEE 96 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchHHH
Confidence 35799999999999999999999999755443
No 155
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=83.37 E-value=2.6 Score=40.21 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=41.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEE
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL 161 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~ 161 (513)
+.|+.| +++|+.|++||.+.-++-. -++++--|.+ .++.+++|+.|..|+.|.
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 455444 5899999999999999866 5566656655 377899999999999664
No 156
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=83.30 E-value=1.1 Score=37.33 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
|-=++|++++||.|++||+|++++
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEE
Confidence 344679999999999999999997
No 157
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=82.65 E-value=3.5 Score=46.37 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=33.4
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
...|.||..|+|.++.+++|+.|..||+|+.++...-
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKm 558 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKM 558 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecccc
Confidence 3579999999999999999999999999999986543
No 158
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=82.61 E-value=2.6 Score=38.94 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCCeeecccEEEEEecC
Q 010300 141 GKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 141 G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
|.--+.++++||.|+.||+|+.++-+
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHH
Confidence 44455589999999999999999753
No 159
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.04 E-value=2.8 Score=37.51 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=38.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCccee-eecCCCeEEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQL 146 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~-i~a~~~G~v~~i 146 (513)
.||-++..-+..|+.|.+||+++-+.|-|..+- +++|.+|+|.-+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 488888888999999999999999999998776 789999988654
No 160
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=81.71 E-value=3.2 Score=40.22 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=41.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL 160 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l 160 (513)
.+.|+.| +++|+.|++||.+..++-. -++++--|.+ .++.+++||.|..||.+
T Consensus 149 ~r~I~~~-~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getv 201 (206)
T PRK05305 149 ARRIVCY-VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETV 201 (206)
T ss_pred ccEEEEe-CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEE
Confidence 4455554 6899999999999999866 4566655655 27889999999999844
No 161
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=81.53 E-value=2.2 Score=39.42 Aligned_cols=61 Identities=28% Similarity=0.333 Sum_probs=37.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCccee--------eecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIE--------ITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~--------i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
+|+--+-++++||+|++||+|+++.-+...-. |-+-.+-+-.-.....+..+..|+.++.+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 46677889999999999999999986643222 22222222112222333467777776654
No 162
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=80.63 E-value=1.6 Score=46.67 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.6
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 138 ~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
-.+|.|.+|++++||.|..||+|++|+.+...
T Consensus 14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~ 45 (404)
T COG0508 14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKAT 45 (404)
T ss_pred cceEEEEEEecCCCCeecCCCeeEEEEcCcee
Confidence 35899999999999999999999999987553
No 163
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=79.39 E-value=2.2 Score=46.86 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=31.6
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
-.+.||..|+|..+.|++|+.|..||+|++++..
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAM 609 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAM 609 (645)
T ss_pred CceecCCCceEEEEEecCCCEecCCCeEEEeEeh
Confidence 3499999999999999999999999999999865
No 164
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=79.10 E-value=1.6 Score=47.47 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=35.4
Q ss_pred EEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
....|++||+|.+||+|.+=+- ....+-||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5678999999999999998864 88899999999999996
No 165
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=78.86 E-value=2.5 Score=43.58 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=27.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
.+|+|.++.+++||.|..|++|++|+.++
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 58999999999999999999999998764
No 166
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=78.46 E-value=2.3 Score=51.72 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=33.9
Q ss_pred cceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 131 ~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
-...|.||..|+|.++++++||.|+.||+|+.++....
T Consensus 1131 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~ 1168 (1201)
T TIGR02712 1131 GAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKM 1168 (1201)
T ss_pred CCcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCe
Confidence 34569999999999999999999999999999987544
No 167
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=78.07 E-value=2.2 Score=44.72 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=32.1
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+.|.+..+|+|.++.+..++.|+.|++|+.|++.+
T Consensus 54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEcCcCceEEEEEEecCCCEecCCCeEEEECcHH
Confidence 46889999999999999999999999999998753
No 168
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=78.06 E-value=4.1 Score=39.22 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=47.3
Q ss_pred ecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEE
Q 010300 93 PLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (513)
Q Consensus 93 ~~p~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~ 162 (513)
.|=.+|. +.-|.|+-+.. ++|+.|++||.+..++= --++.+--|.+-.. ++.+++|+.|..|+.|++
T Consensus 135 ~~v~Vga-~~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 135 AVVQVGA-LLVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEEEecc-ceeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 3334444 34566666654 69999999999999986 44455444443333 889999999999999874
No 169
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=77.70 E-value=2.6 Score=45.29 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=26.8
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
-.+|+|.++++++||.|..|++|++|+..
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 47999999999999999999999999854
No 170
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=77.30 E-value=2.9 Score=44.76 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
...+|+|.++++++||.|..|++|++|+.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 347999999999999999999999999865
No 171
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=77.11 E-value=2.1 Score=38.10 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 566788999999999999999999744
No 172
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=77.01 E-value=2.2 Score=43.27 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=26.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 689999999999999999999999987
No 173
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=76.95 E-value=3 Score=32.81 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=23.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAV 126 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~v 126 (513)
.+|+|+++++++|+.|..|+.|+.|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 5999999999999999999999875
No 174
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=76.94 E-value=2.1 Score=38.01 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 455678999999999999999999754
No 175
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=76.15 E-value=3.2 Score=44.46 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=27.9
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
...+|+|.++++++||.|..|++|++|+.+.
T Consensus 50 a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 50 APAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3479999999999999999999999998654
No 176
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=75.82 E-value=3.2 Score=31.26 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAV 126 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~v 126 (513)
..|++.++++++|+.|..|++|++|
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4778999999999999999999875
No 177
>PRK12784 hypothetical protein; Provisional
Probab=75.33 E-value=4.7 Score=32.63 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=32.8
Q ss_pred eeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 134 ~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
+|.||+-|+|.++++.+++.|-.=++|+.|...+..
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~ 42 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGE 42 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCc
Confidence 589999999999999999999999999999876553
No 178
>PRK12999 pyruvate carboxylase; Reviewed
Probab=74.87 E-value=8.6 Score=46.66 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.3
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
...|.||..|+|.++++++||.|+.||+|+.++...-
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKm 1112 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKM 1112 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcccc
Confidence 3569999999999999999999999999999987543
No 179
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=74.86 E-value=3.7 Score=44.12 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=28.5
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 99 EGIAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 99 ~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+...+|+|.+|++++||.|..|++|++|+.++
T Consensus 45 ~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 45 TSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred ecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 34579999999999999999999999998665
No 180
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=74.10 E-value=4.6 Score=37.92 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+|+--+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 5666899999999999999999998554
No 181
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=73.33 E-value=3.4 Score=46.69 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=22.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+|+--+.+|++||+|++||+|++++-++
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 5566788889999999999999887554
No 182
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=71.47 E-value=2.6 Score=37.92 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+|+--++++++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 4566899999999999999999997554
No 183
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=70.07 E-value=9.4 Score=43.33 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=43.2
Q ss_pred eEEEEEEEcCCCCeec----CCCeEEEEEcCCcceeeecCCCeEEEEE--------------------------------
Q 010300 103 ECELLKWFVKEGDEIE----EFQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------- 146 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~----~gd~l~~vetdK~~~~i~a~~~G~v~~i-------------------------------- 146 (513)
+|+++... ++-|.|= -||-++..=++ ..|.||.+|+|..+
T Consensus 506 ~G~vi~l~-~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~g 581 (648)
T PRK10255 506 TGDVVALD-QVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKG 581 (648)
T ss_pred CcEEEEcc-cCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCC
Confidence 55565553 3333332 27888877665 58899999999876
Q ss_pred ---eeCCCCeeecccEEEEEecC
Q 010300 147 ---LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 147 ---~~~~g~~v~~G~~l~~i~~~ 166 (513)
++++||.|+.||+|+.++-+
T Consensus 582 F~~~Vk~Gd~V~~G~~l~~~D~~ 604 (648)
T PRK10255 582 FKRLVEEGAQVSAGQPILEMDLD 604 (648)
T ss_pred ceEEecCCCEEcCCCEEEEEcHH
Confidence 57799999999999998754
No 184
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=68.96 E-value=7.8 Score=49.93 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=24.2
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEE
Q 010300 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKV 143 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v 143 (513)
.++|++|+.|++||.||+.. --+..|-+..+|+|
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd--p~~~piisE~~G~v 2456 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD--PYTLPIITEKTGTV 2456 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc--CCCcceEeecceEE
Confidence 57899999999999999874 33444444444444
No 185
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=68.85 E-value=6.2 Score=42.68 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=27.2
Q ss_pred CceEEEEEEEcCCCCe-ecCCCeEEEEEcCC
Q 010300 101 IAECELLKWFVKEGDE-IEEFQPLCAVQSDK 130 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~-V~~gd~l~~vetdK 130 (513)
..+|+|.+|++++||. |..|++|++||.+.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 3689999999999999 99999999998654
No 186
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=68.73 E-value=9.8 Score=43.09 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=48.6
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEcCCcceeeecCCCeEEEEE-------------------------------
Q 010300 102 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 146 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~a~~~G~v~~i------------------------------- 146 (513)
.+|+++... ++-|.|=. ||-++..=++ ..|.||.+|+|..+
T Consensus 485 ~~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPLE-QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeHH-HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 578888774 66676655 8888877665 48999999998876
Q ss_pred ----eeCCCCeeecccEEEEEecC
Q 010300 147 ----LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 147 ----~~~~g~~v~~G~~l~~i~~~ 166 (513)
++++||.|+.||+|+.++-+
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEcHH
Confidence 67799999999999999854
No 187
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=67.32 E-value=12 Score=42.26 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=46.6
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEcCCcceeeecCCCeEEEEE-------------------------------
Q 010300 102 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 146 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~a~~~G~v~~i------------------------------- 146 (513)
.+|+++.. -++-|.|=. ||-++..=+| ..|.||.+|+|..+
T Consensus 469 ~~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~ 544 (610)
T TIGR01995 469 VAGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGE 544 (610)
T ss_pred cceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCC
Confidence 47777777 455666555 7777776554 57899999988776
Q ss_pred ----eeCCCCeeecccEEEEEecC
Q 010300 147 ----LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 147 ----~~~~g~~v~~G~~l~~i~~~ 166 (513)
++++||.|+.||+|+.++.+
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEecHH
Confidence 67899999999999999854
No 188
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=66.76 E-value=11 Score=37.69 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.7
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.-|.||.+|++.. .++.||.|+.||+|+.+..
T Consensus 165 r~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 165 RVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred EEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 4499999999966 7999999999999999964
No 189
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=65.68 E-value=6 Score=44.76 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+|+--+.+|++||+|++||+|++++-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4556689999999999999999998554
No 190
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=65.36 E-value=14 Score=37.19 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
.|..|. .+|+.|++||.+..++-. -++.+--|. |.+ ++.+++|+.|..||.|+.|
T Consensus 211 ~i~~~~-~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYE-YENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred ceeeec-cCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCEEEcchhhccC
Confidence 444553 459999999999999874 455444443 333 6779999999999999754
No 191
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=63.41 E-value=9.2 Score=41.72 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCceEEEEEEEcCCCC-eecCCCeEEEEEcCC
Q 010300 100 GIAECELLKWFVKEGD-EIEEFQPLCAVQSDK 130 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd-~V~~gd~l~~vetdK 130 (513)
...+|+|.++++++|+ .|+.|++|++|+.+.
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 3469999999999995 799999999998653
No 192
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=61.61 E-value=8.6 Score=43.63 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 55667889999999999999999986543
No 193
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=61.23 E-value=6.5 Score=44.07 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=30.1
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
|-||..|+|.+|.+++|+.|+.||+|+++...
T Consensus 1109 igAPMpG~vieikvk~G~kV~Kgqpl~VLSAM 1140 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAM 1140 (1176)
T ss_pred ccCCCCCceEEEEEecCceecCCCceEeeecc
Confidence 88999999999999999999999999998754
No 194
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=60.64 E-value=18 Score=41.56 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=30.4
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
|-||..|+|.++.|.+|+.|+.|++|+.++..
T Consensus 1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAM 1113 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAM 1113 (1149)
T ss_pred cCCCCCCceEEEEEccCCeecCCCeeeehhhh
Confidence 89999999999999999999999999999865
No 195
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=59.19 E-value=13 Score=39.87 Aligned_cols=30 Identities=23% Similarity=0.611 Sum_probs=27.7
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-|+++++|.++||.-+..|++.|.+.+..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 668999999999999999999999998865
No 196
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=58.75 E-value=14 Score=40.46 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.2
Q ss_pred EEEEcCCcceeeecCCCeEEEEE------------------------eeCCCCeeecccEEEEEecC
Q 010300 124 CAVQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 124 ~~vetdK~~~~i~a~~~G~v~~i------------------------~~~~g~~v~~G~~l~~i~~~ 166 (513)
..+...+-+.+|.|+.+|+|..| +++.||.|..|++|+.|..+
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 34455677889999999999887 77899999999999999854
No 197
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=58.07 E-value=9.8 Score=38.47 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-..|++++||.|++||+|+++|
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~ 86 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIE 86 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEe
Confidence 45679999999999999999997
No 198
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=57.88 E-value=13 Score=37.36 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=37.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~ 162 (513)
-|.|+ | ..+|+.|++||.+..++-. -++.+--|.+-.--...+.+|+.|..|+.|+.
T Consensus 201 Vg~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~ 257 (259)
T PRK03140 201 VNSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGT 257 (259)
T ss_pred eeEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhcc
Confidence 34444 3 3578888888888888866 55554444332222446778888888888764
No 199
>PRK09294 acyltransferase PapA5; Provisional
Probab=57.66 E-value=2.3e+02 Score=29.89 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=23.7
Q ss_pred eeee---chHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcC
Q 010300 311 EEIN---CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKY 353 (513)
Q Consensus 311 ~eiD---vt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~ 353 (513)
..+| ...|.++.++. ++|++.+++-|.+.++.+.
T Consensus 211 ~~l~~~~~~~L~~~a~~~---------~~t~~~~l~Aa~~~~l~r~ 247 (416)
T PRK09294 211 CRLSKAQTSSLAAFGRRH---------RLTVNALVSAAILLAEWQL 247 (416)
T ss_pred EEeCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHh
Confidence 3555 55555555543 6899999999988887654
No 200
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=57.08 E-value=11 Score=41.82 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=25.8
Q ss_pred CCceEEEEEEEcCCCC-eecCCCeEEEEEcC
Q 010300 100 GIAECELLKWFVKEGD-EIEEFQPLCAVQSD 129 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd-~V~~gd~l~~vetd 129 (513)
...+|+|.++++++|| .|+.|++||++..+
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 3468999999999996 79999999988543
No 201
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=56.82 E-value=17 Score=38.59 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=40.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe-------eCCCCeeecccEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL-------HAPGNIVKVGETLLK 162 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~-------~~~g~~v~~G~~l~~ 162 (513)
-+|+-+.+.+.|-... +...++.-.+|-|..+|+|.++. |++||.|..||+|..
T Consensus 166 ~~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 166 IKGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EEeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 3788888877765433 33334555788999999999985 668899999998874
No 202
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=56.55 E-value=27 Score=36.78 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=39.4
Q ss_pred EcCCCCeecCCCeEEEEE-cCCcceee--ecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 110 FVKEGDEIEEFQPLCAVQ-SDKATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~ve-tdK~~~~i--~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.+|+||.|..||.+.+|. +.-.++.| +....|+|..+ +.+|+ ..+.+.++.++.+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~ 111 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFD 111 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeC
Confidence 369999999999999886 33244444 45569999775 56666 4556778888753
No 203
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=55.80 E-value=16 Score=39.55 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=27.8
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-|.++++|.++||.-+..|++.|.++...
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 668999999999999999999999998865
No 204
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=55.49 E-value=89 Score=38.24 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=25.1
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
--+-+++||-++||+-.+-|+++|.++..
T Consensus 133 ~~l~~~~HHii~DG~S~~~l~~el~~~Y~ 161 (1296)
T PRK10252 133 WYWYQRYHHLLVDGFSFPAITRRIAAIYC 161 (1296)
T ss_pred EEEEEecCceeEccccHHHHHHHHHHHHH
Confidence 34678999999999999999999987653
No 205
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.38 E-value=23 Score=31.89 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.5
Q ss_pred ecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 117 IEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 117 V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
+++||.|.+| |.+|++....+..|+++..|+++|.+..-..+
T Consensus 87 lkkGd~ll~i-----------PvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~ 128 (161)
T COG4072 87 LKKGDELLLI-----------PVEGYVVTPIADVGNRVRKGDPFAAVTTRKGE 128 (161)
T ss_pred ecCCCEEEEE-----------ecCcEEEEEeecccchhcCCCceeEEEecccc
Confidence 4566666665 78999999999999999999999999865443
No 206
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=55.38 E-value=16 Score=39.25 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=27.9
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-|.++++|.++||.-+..|++.|.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 668999999999999999999999998875
No 207
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=55.12 E-value=16 Score=39.13 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=27.8
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
..+|+|.++++++|+.|..|++|++|+.+..
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 4689999999999999999999999986653
No 208
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=54.31 E-value=16 Score=38.82 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=26.3
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIENP 505 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P 505 (513)
+-|+++++|.++||.-+..|++.|.+.+...
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 6689999999999999999999999988764
No 209
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=52.89 E-value=19 Score=44.08 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=61.6
Q ss_pred CceEEEecCCCCCCC----ceEEEEEEEcCC---CCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccE
Q 010300 87 SGIVDVPLAQTGEGI----AECELLKWFVKE---GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 159 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~----~eg~i~~w~v~~---Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~ 159 (513)
....++.+-+|+++- -.|+-...+.++ |-.+.-|--.|.+|.+.--..+.||+.|++.+.+|+.|+.|.+||+
T Consensus 633 gs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~ 712 (2196)
T KOG0368|consen 633 GSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQP 712 (2196)
T ss_pred CcEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCe
Confidence 345677777887652 124444444443 4566778889999988888889999999999999999999999999
Q ss_pred EEEEecC
Q 010300 160 LLKLVVG 166 (513)
Q Consensus 160 l~~i~~~ 166 (513)
-|+|+..
T Consensus 713 YAeiEvM 719 (2196)
T KOG0368|consen 713 YAEIEVM 719 (2196)
T ss_pred eeehehh
Confidence 9988754
No 210
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=52.33 E-value=16 Score=36.23 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=36.1
Q ss_pred CCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEE
Q 010300 114 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (513)
Q Consensus 114 Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~ 162 (513)
|+.|++||.+..++=. -++.+--|.+-+-.+..+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999864 55555544332222567899999999999863
No 211
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=52.10 E-value=19 Score=36.30 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=32.7
Q ss_pred cCCCCeecC-CCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEE
Q 010300 111 VKEGDEIEE-FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 162 (513)
Q Consensus 111 v~~Gd~V~~-gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~ 162 (513)
++.|+.|.+ |++|++.. .-++.+|++|.+ ++-+...+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 566888888 99998843 278899999966 4566666667776654
No 212
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=51.63 E-value=21 Score=38.58 Aligned_cols=30 Identities=27% Similarity=0.706 Sum_probs=27.6
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-|.++++|.++||.-+..|++.|.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 668999999999999999999999998764
No 213
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=50.17 E-value=25 Score=35.92 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=30.8
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..-+.||.+|.+ +..++.|+.|..||+|+.|.....
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~g 266 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLYG 266 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCCC
Confidence 557899999999 456899999999999999986543
No 214
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.15 E-value=16 Score=37.06 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|++++|+.|++||+|++++
T Consensus 65 ~v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 65 EVELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEE
Confidence 3789999999999999999987
No 215
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.48 E-value=18 Score=36.54 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=21.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
++--++|++++|+.|++||+|++++
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 4566789999999999999999987
No 216
>COG3608 Predicted deacylase [General function prediction only]
Probab=49.16 E-value=29 Score=36.14 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=32.8
Q ss_pred EEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 124 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 124 ~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
...+++ .--+.||.+|.| ..+++.||.|..|++|+.+.+-
T Consensus 250 ~~~~~~--~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~ 289 (331)
T COG3608 250 LALPSS--DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDP 289 (331)
T ss_pred eecccc--cceeecCCCceE-EEeecCCCcccCCCeEEEEecC
Confidence 344444 446999999999 6789999999999999999874
No 217
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=48.77 E-value=14 Score=39.68 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=28.0
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 138 ~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
-..|.|.++.-+|||.+..|++|++|+.+..
T Consensus 50 MeeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred ccCCceeeEeeccCCccCCCceEEEEecccc
Confidence 3589999999999999999999999997754
No 218
>PRK04350 thymidine phosphorylase; Provisional
Probab=48.69 E-value=26 Score=38.45 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=35.8
Q ss_pred EEEcCCcceeeecCCCeEEEEE------------------------eeCCCCeeecccEEEEEecC
Q 010300 125 AVQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 125 ~vetdK~~~~i~a~~~G~v~~i------------------------~~~~g~~v~~G~~l~~i~~~ 166 (513)
.+...+-+.+|.|+.+|+|..| +++.||.|..|++|+.|...
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 3555677889999999999887 67899999999999999854
No 219
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=48.60 E-value=14 Score=39.90 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 99 EGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 99 ~~~~eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
+-+..+-=++++++.||+|++||+||.|=.
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 445666678999999999999999999873
No 220
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=47.98 E-value=22 Score=36.35 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=29.7
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..-+.||.+|.+.. .++.||.|+.||+|+.|...
T Consensus 229 ~~~v~A~~~Gl~~~-~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFVP-AKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEEE-CcCCCCEECCCCEEEEEeCC
Confidence 45789999999954 68999999999999999864
No 221
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=47.82 E-value=14 Score=40.31 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=29.7
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+-||..|+|.+++|++|+.|..||.|+.+...
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLIAM 635 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEEec
Confidence 78999999999999999999999999998754
No 222
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=47.62 E-value=36 Score=34.56 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=30.8
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
...+.||.+|.+.. .++.||.|..||+|+.|.....
T Consensus 219 ~~~v~A~~~G~~~~-~~~~Gd~V~~G~~ig~i~d~~~ 254 (287)
T cd06251 219 SVWVRAPQGGLLRS-LVKLGDKVKKGQLLATITDPFG 254 (287)
T ss_pred CeEEecCCCeEEEE-ecCCCCEECCCCEEEEEECCCC
Confidence 35799999999965 7999999999999999986433
No 223
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=47.57 E-value=18 Score=35.61 Aligned_cols=26 Identities=19% Similarity=0.090 Sum_probs=24.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.+|.|..+++++|+.|..|++|+.|-
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 58999999999999999999999875
No 224
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=47.50 E-value=13 Score=37.21 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.9
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
+..++-|...+++|+|||.|+.||+|++=.
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK 61 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFEDK 61 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEeeC
Confidence 567899999999999999999999998654
No 225
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.40 E-value=20 Score=36.44 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-++|++++|+.|++||+|++++
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVT 87 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEE
Confidence 35789999999999999999987
No 226
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=46.29 E-value=31 Score=36.38 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.9
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
.-+.||.+|.+. .+++.||.|+.||+|+.|.....
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~d~~g 324 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEILDPLG 324 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEECCCC
Confidence 458999999995 56899999999999999986543
No 227
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=46.16 E-value=28 Score=29.84 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=33.0
Q ss_pred CeecCCCeEEEEEcCC-cceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 115 DEIEEFQPLCAVQSDK-ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 115 d~V~~gd~l~~vetdK-~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
....++.+|-++..-+ ..+.+ ....|.-.+..|++||.|..||.|+..+.
T Consensus 13 K~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 13 KELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred cccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 3444555555554333 22223 44567777889999999999999998753
No 228
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=46.04 E-value=17 Score=39.22 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=17.7
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEE
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
++.+.=+.++++.||+|++||+|+.|=
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 344445667777777777777777665
No 229
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=45.92 E-value=21 Score=36.45 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
--++|++++|+.|++||+|++++
T Consensus 61 ~~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 61 LTIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEE
Confidence 34789999999999999999886
No 230
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=45.75 E-value=42 Score=35.73 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe-------eCCCCeeecccEEEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL-------HAPGNIVKVGETLLK 162 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~-------~~~g~~v~~G~~l~~ 162 (513)
-+|+-..+.+.|.....+ .+.+..-..|-|..+|+|.++. |++||.|..||+|..
T Consensus 162 i~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 162 VRGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred EEeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 377777777777653211 1123334578899999999985 568888899998874
No 231
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=45.40 E-value=20 Score=29.60 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=18.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
=+-+....|++||.|++||.|+.+...
T Consensus 49 y~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 49 YGHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EEEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred EeccccccceecccccCCCEEEecCCC
Confidence 344556668899999999999988743
No 232
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=45.28 E-value=38 Score=34.94 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=30.9
Q ss_pred CcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 130 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 130 K~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+...-+.||.+|.+. ..++.|+.|+.||+|+.|...
T Consensus 242 ~~~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEECC
Confidence 345679999999995 569999999999999999864
No 233
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.15 E-value=22 Score=36.17 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|++++|+.|++||+|++++
T Consensus 67 ~~~~~~~dG~~v~~g~~i~~i~ 88 (277)
T PRK05742 67 AVHWQVADGERVSANQVLFHLE 88 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEE
Confidence 3889999999999999999987
No 234
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=45.04 E-value=25 Score=35.88 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=39.3
Q ss_pred EEEEEEcCC----CCeecCCCeEEEEEcCCcceeeecCCCeEE-EEEeeCCCCeeecccEEEEEe
Q 010300 105 ELLKWFVKE----GDEIEEFQPLCAVQSDKATIEITSRYKGKV-AQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 105 ~i~~w~v~~----Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v-~~i~~~~g~~v~~G~~l~~i~ 164 (513)
.++.|.... |..|++||.+..++=. -++.+--|.+ .+ -...+.+|+.|..||.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 445555432 7799999999999864 4454443333 33 123478999999999998654
No 235
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=44.86 E-value=28 Score=35.37 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=30.9
Q ss_pred CcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 130 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 130 K~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+...-+.||.+|.+. ..++.|+.|+.||+|+.+....
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~dp~ 257 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVTDYF 257 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCC
Confidence 345678999999995 5689999999999999997643
No 236
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=44.74 E-value=29 Score=27.98 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 138 ~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
+..|+ .++++.||.|..|++|+.|-...+
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEEESSS
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEEcCCh
Confidence 34454 478999999999999999986544
No 237
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=44.43 E-value=23 Score=35.90 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-++|++++|+.|++||+|++++
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEE
Confidence 45678899999999999998887
No 238
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=44.27 E-value=18 Score=38.76 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=23.2
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
+..+.=+.++++.||+|++||+||.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 56666678889999999999999988643
No 239
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=43.96 E-value=25 Score=32.34 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=29.6
Q ss_pred CCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 114 GDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 114 Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
|=.+++|+-||.++ .+|+..-+.+.+|+.|..|+.||.+.+...+
T Consensus 73 ~~~l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~KGe 117 (150)
T PF09891_consen 73 GILLKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGE 117 (150)
T ss_dssp EEEE-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TTS-
T ss_pred EEEECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecCcc
Confidence 34577888888886 3577778889999999999999999876543
No 240
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.77 E-value=23 Score=36.14 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-++|++++|+.|++||+|++++
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~ 94 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIE 94 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEE
Confidence 44679999999999999999997
No 241
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=43.59 E-value=32 Score=37.77 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=34.5
Q ss_pred EEcCCcceeeecCCCeEEEEE------------------------eeCCCCeeecccEEEEEecC
Q 010300 126 VQSDKATIEITSRYKGKVAQL------------------------LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~i------------------------~~~~g~~v~~G~~l~~i~~~ 166 (513)
+-..+-+.+|.|+.+|+|..| +++.||.|..|++|+.|...
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 345566788999999999887 67899999999999999854
No 242
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.29 E-value=24 Score=35.62 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
+--++|++++|+.|++||+|++++
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 555789999999999999999997
No 243
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.28 E-value=24 Score=36.07 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-++|++++|+.|++||+|++++
T Consensus 76 ~~v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 76 YEVLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred eEEEEEcCCCCEecCCCEEEEEE
Confidence 45778999999999999999887
No 244
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=43.27 E-value=24 Score=36.18 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=17.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|++++|+.|++||+|++++
T Consensus 86 ~v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 86 TIEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 4678888888888888888886
No 245
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=43.18 E-value=21 Score=39.08 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 97 TGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 97 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
+|--+..+-=+.++++.||+|++||+|+.|=+
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 35556777778999999999999999999863
No 246
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.05 E-value=25 Score=36.07 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-++|++++||.|++||+|++++
T Consensus 82 ~~v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 82 IEVTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEE
Confidence 35788899999999999988876
No 247
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=42.96 E-value=24 Score=38.20 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=29.7
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhhCHH
Q 010300 474 IMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 506 (513)
Q Consensus 474 ~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~ 506 (513)
..-|.+.+||-+.||.-+..|.+.|-+.|+.+.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 567899999999999999999999999998643
No 248
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=42.74 E-value=25 Score=36.29 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
--++|++++|+.|++||+|++++
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~ 100 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVT 100 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEE
Confidence 44679999999999999999987
No 249
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.53 E-value=25 Score=35.62 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
--++|++++|+.|++||+|++++
T Consensus 58 ~~~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 58 IECVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred CEEEEEcCCCCEecCCCEEEEEE
Confidence 34689999999999999999987
No 250
>PRK04350 thymidine phosphorylase; Provisional
Probab=42.46 E-value=23 Score=38.88 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=27.4
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 97 TGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 97 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
+|--+..+-=+.++++.||.|++||+|+.|=+
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 45567777888999999999999999999873
No 251
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=42.45 E-value=52 Score=36.88 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=41.0
Q ss_pred EcCCCCeecCCCeEEEEE-cCCccee--eecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 110 FVKEGDEIEEFQPLCAVQ-SDKATIE--ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~ve-tdK~~~~--i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.+++||.|..||++++|. |.-..+- ++....|+|..+ +.+|+ ..+.++|+.++.
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEee
Confidence 588899999999999765 4434444 455568999876 66776 677899999985
No 252
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.04 E-value=26 Score=35.69 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
+.-++|++++|+.|++||+|++++
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~ 92 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATIS 92 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEE
Confidence 356789999999999999999987
No 253
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=42.01 E-value=37 Score=36.40 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=34.6
Q ss_pred EEcCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecC
Q 010300 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~ 166 (513)
+-..+-..+|.|+.+|+|..| +.+.||.|..|++|+.|...
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 445677888999999999887 67799999999999999854
No 254
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=41.97 E-value=23 Score=38.93 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=27.4
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 97 TGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 97 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
+|--+..+-=+.++++.||.|++||+|+.|=+
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 45567777888999999999999999999873
No 255
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=41.76 E-value=32 Score=35.71 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=29.7
Q ss_pred cceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 131 ~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
...-+.||.+|.+. ..++.|+.|+.||+|+.|..
T Consensus 254 ~~~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 254 DDCFIFAEDDGLIE-FMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred CCeEEEcCCCeEEE-EecCCCCEeCCCCEEEEEEC
Confidence 34469999999995 57999999999999999986
No 256
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=41.65 E-value=36 Score=36.85 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=32.6
Q ss_pred cCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecC
Q 010300 128 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 128 tdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~ 166 (513)
.-+-..+|.|+.+|+|..| +++.||.|..|++|+.|...
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECC
Confidence 3456778889999998887 67799999999999999854
No 257
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=41.61 E-value=55 Score=36.75 Aligned_cols=129 Identities=23% Similarity=0.201 Sum_probs=72.0
Q ss_pred EcCCCCeecCCCeEEEEEcC-Cc--ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCCC---------CCCCCCC
Q 010300 110 FVKEGDEIEEFQPLCAVQSD-KA--TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAV---------PTPSSDV 177 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetd-K~--~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~~---------~~~~~~~ 177 (513)
.+++||.|..||.|.+|.-. -. -+-++....|++..| +.+|+ ..+.++|+.++..+... +-..+ .
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~-~ 199 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDEDGEGVELTMMQKWPVRRP-R 199 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEccCCceeeeccccccccccC-C
Confidence 47899999999999998743 12 223556668999776 66666 56678999998654421 11000 0
Q ss_pred CCCCCCCCCCC---------C-CC-CCCCC---CCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHH
Q 010300 178 LESVKPPGSEN---------S-PD-SKLNK---DTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (513)
Q Consensus 178 ~~~~~~~~~~~---------~-~~-~~~~~---~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~ 241 (513)
+........++ . -+ ..... ....++-=|-..-.+|+.-..|+.-+-|-|-.||=..+=++.|-+
T Consensus 200 p~~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKTvl~~~iak~a~adivVyvg~GERg~E~~e~l~ef~~ 277 (586)
T PRK04192 200 PYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPE 277 (586)
T ss_pred cccccCCCCCccccCchhhhcccccccCCeEEEecCCCCCHHHHHHHHHhcCCCCEEEEEEcCcChHHHHHHHHHHHh
Confidence 00000000000 0 00 00000 000111123445667888888888888999988876666666543
No 258
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=41.02 E-value=88 Score=25.72 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=34.5
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.+|+|+.+.... ...-...|+...-. ..-+.. +..+.++.||.|+.|+.|+.+...
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~---~~~y~~-l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGY---ITVYGH-LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSE---EEEEEE-ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcC---CEEEec-cccccceecccccCCCEEEecCCC
Confidence 4678888776633 23344455543322 222222 556679999999999999999844
No 259
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=40.65 E-value=59 Score=39.96 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=29.4
Q ss_pred EEcCCCCeecCCCeEEEEEcC-------CcceeeecCCCeEE
Q 010300 109 WFVKEGDEIEEFQPLCAVQSD-------KATIEITSRYKGKV 143 (513)
Q Consensus 109 w~v~~Gd~V~~gd~l~~vetd-------K~~~~i~a~~~G~v 143 (513)
++|+.|++|+.+|+|+|+-+. |+.=.|.|+.+|.|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 589999999999999999864 35557889999965
No 260
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=40.22 E-value=24 Score=38.17 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+.-+.=+.++++.||.|++||+|+.|=+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 455666778888888888888888876554
No 261
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=39.77 E-value=43 Score=36.33 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.2
Q ss_pred cCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecC
Q 010300 128 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 128 tdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~ 166 (513)
..+-..+|.|+.+|+|..| +++.||.|..|++|+.|...
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCC
Confidence 4566788999999999877 67799999999999999854
No 262
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=39.74 E-value=32 Score=36.18 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=42.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCccee-eecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~-i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
+|.+..|....+..|++||.+...+-.-..+- ++++. .+ +..+++|+.|..||.|+.+..
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 34455666666789999999999986433332 34553 23 556899999999999987754
No 263
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=39.41 E-value=30 Score=34.85 Aligned_cols=21 Identities=33% Similarity=0.770 Sum_probs=18.7
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~ve 127 (513)
++|++++|+.|++||+|++++
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~ 76 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVE 76 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 479999999999999999887
No 264
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.33 E-value=30 Score=35.16 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
--++|++++|+.|++||+|++++
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEE
Confidence 45677888888888888888876
No 265
>PRK12467 peptide synthase; Provisional
Probab=39.08 E-value=4.3e+02 Score=37.04 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.4
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhh
Q 010300 477 VNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 477 vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
+-+++||-++||+-...|+++|.++..
T Consensus 177 l~l~~HHii~DG~S~~~l~~el~~~Y~ 203 (3956)
T PRK12467 177 LVVTLHHIISDGWSMRVLVEELVQLYS 203 (3956)
T ss_pred EEEecCeeeEccchHHHHHHHHHHHHH
Confidence 679999999999999999999988764
No 266
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=38.38 E-value=32 Score=34.96 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
--++|+++.|+.|++||+|++++
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~ 82 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAK 82 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEE
Confidence 45788899999999999988887
No 267
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=37.52 E-value=43 Score=36.24 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=33.5
Q ss_pred EEcCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEec
Q 010300 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~ 165 (513)
+-.-+-..+|.|+.+|+|..| +++.||.|..|++|+.|..
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeC
Confidence 345566788999999999888 6779999999999999984
No 268
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=35.81 E-value=43 Score=35.65 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=19.9
Q ss_pred ceEEEEEE-------EcCCCCeecCCCeEEE
Q 010300 102 AECELLKW-------FVKEGDEIEEFQPLCA 125 (513)
Q Consensus 102 ~eg~i~~w-------~v~~Gd~V~~gd~l~~ 125 (513)
.+|.|++. .|++||.|++||+|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 47788876 4789999999999984
No 269
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=35.80 E-value=90 Score=34.51 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=39.5
Q ss_pred cCCCCeecCCCeEEEEEcCC-c-ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 111 VKEGDEIEEFQPLCAVQSDK-A-TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 111 v~~Gd~V~~gd~l~~vetdK-~-~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
+++||+|..||+|..|.-.- . .+-+..+..|.+..+...+|+ ..+.++|+.++.+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCCC
Confidence 47999999999999875222 2 122455656666677666776 456689999976544
No 270
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=33.81 E-value=79 Score=35.49 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=40.6
Q ss_pred cCCCCeecCCCeEEEEE-cCCccee--eecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 111 VKEGDEIEEFQPLCAVQ-SDKATIE--ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 111 v~~Gd~V~~gd~l~~ve-tdK~~~~--i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+++||.|..||++++|. +.-.+.. ++....|+|..| +.+|+ ..+.++++.++..
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~ 177 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTD 177 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecC
Confidence 78999999999999884 4434333 455579999776 66776 5667899998853
No 271
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=33.66 E-value=1.2e+02 Score=22.41 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.8
Q ss_pred cccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccc
Q 010300 303 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMN 357 (513)
Q Consensus 303 ~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN 357 (513)
+.|+|++..+-++-..++.+.+.+ +-|++.-+++++-.+|.+...++
T Consensus 3 ~~~~f~lRlP~~l~~~lk~~A~~~--------gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 3 KDPQFNLRLPEELKEKLKERAEEN--------GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CSEEEEEECEHHHHHHHHHHHHHT--------TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCceeeECCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHhccccCC
Confidence 568899888888777777666653 67999999999999999876654
No 272
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=32.86 E-value=1.5e+02 Score=28.15 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=40.3
Q ss_pred eEEEEEEEcCCCCeec--------CCCe-EEEEEcCCcceeeecCCCeEE-EE--EeeCCCCeeecccEEEEEecC
Q 010300 103 ECELLKWFVKEGDEIE--------EFQP-LCAVQSDKATIEITSRYKGKV-AQ--LLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~--------~gd~-l~~vetdK~~~~i~a~~~G~v-~~--i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+|+|.+....+|+... +++- ++.+||+...+.+.. ..|.+ .+ ..+++|+.+..|+.++.+.-+
T Consensus 80 ~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~v~kGeeiG~f~fG 154 (189)
T TIGR00164 80 GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEKVSRGQRIGMIRFG 154 (189)
T ss_pred ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCEEecCcEEEEEecC
Confidence 7888887777886433 3333 467777654333322 22332 22 256789999999999999865
No 273
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=31.20 E-value=50 Score=40.79 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=29.8
Q ss_pred EEEcCCCCeecCCCeEEEEEc--------CCcceeeecCCCeEE
Q 010300 108 KWFVKEGDEIEEFQPLCAVQS--------DKATIEITSRYKGKV 143 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vet--------dK~~~~i~a~~~G~v 143 (513)
.++|++||.|++||+|+|+.. +|+...|-|..+|.|
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 368999999999999999984 445578888888874
No 274
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=30.82 E-value=93 Score=37.47 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=48.4
Q ss_pred EecCCCCCCCceEEEEEEE----cCCCCeecCCCeEEEEE-cCCccee--eecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 92 VPLAQTGEGIAECELLKWF----VKEGDEIEEFQPLCAVQ-SDKATIE--ITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 92 ~~~p~lg~~~~eg~i~~w~----v~~Gd~V~~gd~l~~ve-tdK~~~~--i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
+.+|.|... .+|. +++||+|..||.+.+|. |.-.+.- ++....|+|..| +.+|+ ..+.++++.++
T Consensus 107 ~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 456777664 2443 68899999999999886 3333444 455668999877 67777 46678999998
Q ss_pred cCC
Q 010300 165 VGD 167 (513)
Q Consensus 165 ~~~ 167 (513)
..+
T Consensus 179 ~~~ 181 (1017)
T PRK14698 179 TPS 181 (1017)
T ss_pred cCC
Confidence 643
No 275
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=28.93 E-value=47 Score=35.57 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=15.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
.-+.=+..+++.||.|++||+|+.|=+
T Consensus 374 D~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 374 DKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred CcccceEEEecCCCeeccCCeEEEEec
Confidence 344445555666666666666665544
No 276
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=28.62 E-value=33 Score=35.55 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=9.3
Q ss_pred EcCCCCeecCCCeEEEEE
Q 010300 110 FVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~ve 127 (513)
+|++||.|++||.|+++-
T Consensus 273 ~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 273 LVREQQEVKAGQKIATMG 290 (319)
T ss_pred ccCCcCEECCCCeEEeEc
Confidence 355555555555555544
No 277
>PRK05691 peptide synthase; Validated
Probab=28.43 E-value=9.7e+02 Score=34.10 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.6
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
-+-+++||-++||+-...++++|.++..
T Consensus 802 ~l~l~~HHii~DG~S~~ll~~el~~~Y~ 829 (4334)
T PRK05691 802 QLLVTLHHIVADGWSLNILLDEFSRLYA 829 (4334)
T ss_pred EEEEeeCceeeccchHHHHHHHHHHHHH
Confidence 4679999999999999999999987653
No 278
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=28.31 E-value=45 Score=29.21 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=23.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeec-CCCeEEEEEeeCCCCeeecccEE
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITS-RYKGKVAQLLHAPGNIVKVGETL 160 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a-~~~G~v~~i~~~~g~~v~~G~~l 160 (513)
..|+|.++..++ +|.-...|++.....-++. |.. .++.|.+||.|+.||+|
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G---peLiV~eG~~V~~dqpL 60 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG---PELIVSEGQSVKADQPL 60 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS---S-BS--TT-EETTT-BS
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC---CeEEEcCCCEEecCCcc
Confidence 467777776543 4555555555443211111 111 14467777777777766
No 279
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=28.02 E-value=55 Score=34.30 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=20.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
.+++ |.+++|+.|.+|++|++||-
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEE
Confidence 4554 89999999999999999983
No 280
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=27.47 E-value=75 Score=33.80 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.8
Q ss_pred ceEEEEEEE-------cCCCCeecCCCeEEEEE
Q 010300 102 AECELLKWF-------VKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 102 ~eg~i~~w~-------v~~Gd~V~~gd~l~~ve 127 (513)
.+|.|++.. |++||.|++||+|..=.
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG~ 225 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLISGI 225 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEEeE
Confidence 478888774 68999999999998543
No 281
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.07 E-value=62 Score=33.13 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=19.6
Q ss_pred EEEEEEEc--CCCCeecCCCeEEEEE
Q 010300 104 CELLKWFV--KEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 104 g~i~~w~v--~~Gd~V~~gd~l~~ve 127 (513)
....+|++ ++|+.|++||+|++++
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~ 95 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEII 95 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEE
Confidence 34567777 9999999999999887
No 282
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=25.58 E-value=78 Score=33.35 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=15.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
+..|.+++|+.|..|++|++||
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~ 93 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIE 93 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEE
Confidence 4566777777777777777776
No 283
>PRK12316 peptide synthase; Provisional
Probab=25.13 E-value=9.9e+02 Score=34.68 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=25.5
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
-+-+++||=++||+-..-|+++|.++-.+
T Consensus 176 ~l~l~~HHii~Dg~S~~~l~~el~~~Y~~ 204 (5163)
T PRK12316 176 VLLLTLHHIVSDGWSMNVLIEEFSRFYSA 204 (5163)
T ss_pred EEEEcccceeechhHHHHHHHHHHHHHHH
Confidence 36799999999999999999999987653
No 284
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=24.71 E-value=1e+02 Score=33.08 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=33.6
Q ss_pred EEEcCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCCC
Q 010300 125 AVQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 125 ~vetdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
.+..-+-..+|.|..+|+|..+ +.+.||.|++|++|+.|....+
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~ 403 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESE 403 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCc
Confidence 3445556677788888888776 5678999999999999987443
No 285
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=24.14 E-value=46 Score=32.77 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=25.9
Q ss_pred EEEEcCCCCeecCCCeEEEEEcCCccee
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQSDKATIE 134 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~vetdK~~~~ 134 (513)
..|++.+|..+++=|..|.||.||+.++
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccc
Confidence 3599999999999999999999999887
No 286
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=23.88 E-value=1.7e+02 Score=30.32 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.0
Q ss_pred EEEeeCCCCeeecccEEEEEecCC
Q 010300 144 AQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 144 ~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.+++|++||.|+.||.|+.+...+
T Consensus 270 ~~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 270 DTMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred CccccCCcCEECCCCeEEeEcCCC
Confidence 356789999999999999997644
No 287
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=23.59 E-value=99 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=18.3
Q ss_pred EEEEEeeCCCCeeecccEEEEEec
Q 010300 142 KVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 142 ~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.-.++++++|+.+..|++|+.+.-
T Consensus 45 ~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 45 LEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEEeCCCCCccCCcEEEEEEe
Confidence 335678999999999999999874
No 288
>PRK05691 peptide synthase; Validated
Probab=23.32 E-value=1.1e+03 Score=33.58 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.4
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHh
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLI 502 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~L 502 (513)
.+-+++||-++||+-...|+++|.++-
T Consensus 1855 ~l~~~~HHii~DG~S~~ll~~el~~~Y 1881 (4334)
T PRK05691 1855 YFVLTLHHIVTEGWAMDIFARELGALY 1881 (4334)
T ss_pred EEEEecchhhhhhhhHHHHHHHHHHHH
Confidence 478999999999999999999998865
No 289
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=23.02 E-value=1e+02 Score=25.67 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCeEEEEEeeCC-CCeeecccEEEEEecCCC
Q 010300 138 RYKGKVAQLLHAP-GNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 138 ~~~G~v~~i~~~~-g~~v~~G~~l~~i~~~~~ 168 (513)
..-|.|..+.... |+.|..|++|+.|+....
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 4478888876665 999999999999997644
No 290
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=22.86 E-value=7.9e+02 Score=26.55 Aligned_cols=175 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred echHHHHHHHHhcCCCCCCCCccchHHHHHHHH--HHHHhc--CcccceEEccCCceEEEcccceEE-eEEecCCCeEee
Q 010300 314 NCDALVKLKASFQNNNSDPNIKHTFLPSLIKSL--SMAMSK--YPFMNSCFNEESLEVILKGSHNIG-IAMATQHGLAVP 388 (513)
Q Consensus 314 Dvt~l~~~rk~~~~~~~~~g~klS~~~~likAv--a~Al~~--~P~lN~~~~~d~~~i~~~~~i~ig-iAv~~~~Gl~~p 388 (513)
.+..+.++++.+ +-|++++++.|. -+.+-. ++..|.++.-+- .|=++.++--- .-+..=.+....
T Consensus 226 ef~~ikay~k~~---------gaTiNDiilaa~~~fr~~y~~~~~k~~~~lsi~~-~VDlRkyl~sk~~sI~Nls~~~~i 295 (439)
T COG4908 226 EFKKIKAYAKVH---------GATINDIILAALLKFRLLYNTTHEKANNYLSIDM-PVDLRKYLPSKEESISNLSSYLTI 295 (439)
T ss_pred HHHHHHHhhhhc---------CCcHHHHHHHHHHHHHHHHhhhchhhcCeeeece-eeehhhhccccccceeccceeEEE
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhhcCC--------------------------CCCCCCCCCeEEEEeCCCCC--Cccc
Q 010300 389 NIKNVQSLSILEITKELSRLQQLAKDNE--------------------------LNPADNSGGTITLSNIGAIG--GKFG 440 (513)
Q Consensus 389 vI~~a~~~sl~ei~~~~~~l~~~ar~~~--------------------------l~~~d~~ggtftISnlg~~G--~~~~ 440 (513)
+|+..+..+|....+.+++.....+.|- +..+++-.|-.. ||+|-+. ...|
T Consensus 296 ~I~~dd~~~fe~t~~~vk~~~~~~k~gl~g~~~~yl~~ilp~~fkr~~~~~~kk~~~~~~~~g~ss-TNiG~id~~~~~f 374 (439)
T COG4908 296 VINVDDVTDFEKTLEKVKGIMNPKKIGLAGLYSFYLLGILPLMFKRKLYLKLKKLVEDRFVEGKSS-TNIGIIDEEVPPF 374 (439)
T ss_pred EEeccccccHHHHHHHHHhhcCccccCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccc-ccccccccccCCc
Q ss_pred eeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHh
Q 010300 441 APLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLI 502 (513)
Q Consensus 441 tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~L 502 (513)
-....-....+ +|...-.|+| .=|--..+..+.+|+.|.--==|--....|+..|...|
T Consensus 375 ~g~~~d~~~~~--~~p~~~ap~F-pl~~tt~g~~~tLtinf~r~~dk~~~~~~fl~~f~~~l 433 (439)
T COG4908 375 GGEAEDTDAFF--FGPCKYAPVF-PLGVTTYGYKLTLTINFYRTNDKKKITGHFLDLFAKEL 433 (439)
T ss_pred CceecccceEE--EeecccCccc-eeEEEEeccceEEEEEEEeecCcchHHHHHHHHHHhHh
No 291
>PRK11637 AmiB activator; Provisional
Probab=22.78 E-value=1.5e+02 Score=31.84 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=38.4
Q ss_pred eEEEecCCCCC---CCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 89 IVDVPLAQTGE---GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 89 ~~~~~~p~lg~---~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
-++|..|. |. ...+|+|+....-. .-|- ++.|+-....+.+-+ .+..+.|.+|+.|..|++|+.+..
T Consensus 331 Gi~i~~~~-g~~v~A~~~G~V~~~~~~~----~~G~-~vii~hg~g~~t~Y~----~~~~~~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 331 GMVIGASE-GTEVKAIADGRVLLADWLQ----GYGL-VVVVEHGKGDMSLYG----YNQSALVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred CEEeecCC-CCeEEecCCeEEEEeeccC----Cccc-EEEEEeCCCcEEEcc----CCCcCCCCCcCEECCCCeEEeecC
Confidence 35665543 22 23567766542111 1122 335554433333332 244567999999999999999975
Q ss_pred CC
Q 010300 166 GD 167 (513)
Q Consensus 166 ~~ 167 (513)
.+
T Consensus 401 ~g 402 (428)
T PRK11637 401 SG 402 (428)
T ss_pred CC
Confidence 43
No 292
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=22.66 E-value=1.1e+02 Score=40.49 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=17.1
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 010300 109 WFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 109 w~v~~Gd~V~~gd~l~~ve 127 (513)
+.|++||.|+.||+|+.+-
T Consensus 2616 l~v~~g~~v~~gdilak~p 2634 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIP 2634 (2890)
T ss_pred EEecCCCEecccceEeecc
Confidence 5799999999999999875
No 293
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.21 E-value=79 Score=28.13 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=30.4
Q ss_pred CHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHh
Q 010300 205 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (513)
Q Consensus 205 sPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~ 242 (513)
.-+.+.-|++.|++...|+=+| +-||++||+.+..+
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~--~~iT~~dV~~f~~A 82 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTG--GGITEADVEAFQRA 82 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCC--CCCCHHHHHHHHHH
Confidence 4567888999999999999777 46999999998765
No 294
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=21.61 E-value=91 Score=31.27 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
.+.+..|.+++|+.|..|+++++||-
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G 73 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEG 73 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEE
Confidence 45677899999999999999999983
No 295
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=21.60 E-value=84 Score=26.11 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.6
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhhCH
Q 010300 477 VNIGADHRVLDGATVAKFCNEWKQLIENP 505 (513)
Q Consensus 477 vslt~DHRviDG~~aa~Fl~~lk~~Le~P 505 (513)
.++.+|-|+.++....++++.+++++++-
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~~ 107 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEKI 107 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999864
No 296
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=21.09 E-value=31 Score=30.80 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=16.7
Q ss_pred CHHHHHHHHHhCCCCCCcc
Q 010300 205 TPTVRNLAKLYGINLYDVD 223 (513)
Q Consensus 205 sPaaR~lA~e~gidl~~v~ 223 (513)
-|.+|.||.++||+++.|.
T Consensus 35 LPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 35 LPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCcHHHHHHHhCCCHHHHH
Confidence 5899999999999988664
No 297
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=20.99 E-value=1.3e+02 Score=39.79 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHhhcCCC
Q 010300 397 SILEITKELSRLQQLAKDNEL 417 (513)
Q Consensus 397 sl~ei~~~~~~l~~~ar~~~l 417 (513)
|-+.|++..+-|.+.|-.|+.
T Consensus 2831 SAASFQETTkVLteAAi~gk~ 2851 (2890)
T PRK09603 2831 SAASFQETTKVLTEASIAMKK 2851 (2890)
T ss_pred hcccccchhHHHHHHHhcCCC
Confidence 445677777788888888874
No 298
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=20.72 E-value=84 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=24.8
Q ss_pred ccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHH
Q 010300 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (513)
Q Consensus 203 ~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~ 239 (513)
...|.+.++++++|||++.. -+ .|+.+|+..+
T Consensus 41 ~~~~~a~~~l~~~Gid~~~~---~~--~l~~~~~~~~ 72 (140)
T smart00226 41 GADPRAVEVLKEHGIALSHH---AS--QLTSSDFKNA 72 (140)
T ss_pred CCCHHHHHHHHHcCcCccce---ec--cCCHHHHHhC
Confidence 47899999999999998642 22 7888887654
No 299
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=20.46 E-value=1e+02 Score=31.69 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=18.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet 128 (513)
.+++ . .+++|+.|..|++|++||-
T Consensus 52 ~~~i-~-~~~dG~~v~~g~~i~~i~G 75 (302)
T cd01571 52 PVKV-Y-ALPEGTIFNPKEPVLRIEG 75 (302)
T ss_pred CeEE-E-EeCCCCEECCCCcEEEEEe
Confidence 4455 3 4888888888888888873
No 300
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.22 E-value=54 Score=35.69 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.7
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.-+++-|.-.+.+|++||.|..||+|+.-..
T Consensus 32 pl~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~ 62 (447)
T TIGR01936 32 DGRDFVGMRPKMKVRPGDKVKAGQPLFEDKK 62 (447)
T ss_pred echhcCCCCCceEeCcCCEEcCCCEeEecCC
Confidence 4567889889999999999999999987653
Done!