Query 010300
Match_columns 513
No_of_seqs 301 out of 2165
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:48:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 1.2E-93 4E-98 757.0 0.7 411 90-512 3-428 (428)
2 2ii3_A Lipoamide acyltransfera 100.0 4.1E-62 1.4E-66 484.6 22.2 234 280-513 29-262 (262)
3 3l60_A Branched-chain alpha-ke 100.0 3.4E-60 1.2E-64 467.2 26.4 224 283-512 16-242 (250)
4 1dpb_A Dihydrolipoyl-transacet 100.0 2.8E-60 9.5E-65 467.3 24.9 229 281-510 14-243 (243)
5 1scz_A E2, dihydrolipoamide su 100.0 9.6E-61 3.3E-65 467.8 20.4 228 282-512 4-233 (233)
6 3mae_A 2-oxoisovalerate dehydr 100.0 3.2E-60 1.1E-64 468.9 18.4 228 280-510 16-245 (256)
7 3rqc_A Probable lipoamide acyl 100.0 4.9E-59 1.7E-63 453.2 21.7 219 281-512 5-224 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 3.6E-59 1.2E-63 458.7 15.7 226 282-510 12-239 (239)
9 2xt6_A 2-oxoglutarate decarbox 100.0 4.9E-46 1.7E-50 430.6 17.0 212 297-508 1-225 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 1.6E-43 5.3E-48 343.0 23.7 184 300-505 26-215 (219)
11 3cla_A Type III chloramphenico 100.0 6E-43 2.1E-47 337.6 25.2 183 301-504 22-210 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 2.8E-41 9.6E-46 326.4 22.5 182 301-502 24-216 (217)
13 1zy8_K Pyruvate dehydrogenase 100.0 4.1E-31 1.4E-35 256.7 5.1 154 89-242 3-169 (229)
14 1y8o_B Dihydrolipoyllysine-res 99.8 2.2E-18 7.6E-23 152.3 11.6 82 87-168 25-107 (128)
15 3crk_C Dihydrolipoyllysine-res 99.8 4.7E-18 1.6E-22 140.6 12.4 80 89-168 5-85 (87)
16 1k8m_A E2 component of branche 99.8 4E-18 1.4E-22 142.9 10.9 81 87-167 2-82 (93)
17 2dnc_A Pyruvate dehydrogenase 99.7 7.4E-18 2.5E-22 142.6 12.0 80 89-168 7-87 (98)
18 2dne_A Dihydrolipoyllysine-res 99.7 1.1E-17 3.8E-22 144.0 10.5 79 89-167 7-86 (108)
19 1ghj_A E2, E2, the dihydrolipo 99.7 4.8E-17 1.6E-21 131.9 9.3 76 90-165 2-77 (79)
20 2l5t_A Lipoamide acyltransfera 99.6 3.3E-16 1.1E-20 126.3 9.0 75 90-164 2-76 (77)
21 1pmr_A Dihydrolipoyl succinylt 99.6 1.6E-17 5.3E-22 135.2 0.5 76 90-165 3-78 (80)
22 1qjo_A Dihydrolipoamide acetyl 99.6 6.8E-16 2.3E-20 125.2 9.6 76 90-167 3-78 (80)
23 1iyu_A E2P, dihydrolipoamide a 99.6 3.3E-15 1.1E-19 121.0 10.3 75 90-167 2-76 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.6 1.2E-15 4.1E-20 124.1 4.8 77 89-166 2-78 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.4 1.9E-14 6.6E-19 118.2 0.9 72 90-167 3-74 (85)
26 1z6h_A Biotin/lipoyl attachmen 99.3 2.7E-12 9.3E-17 101.5 8.8 65 102-166 6-70 (72)
27 2kcc_A Acetyl-COA carboxylase 99.3 1.5E-12 5.2E-17 106.7 6.1 65 102-167 12-76 (84)
28 2jku_A Propionyl-COA carboxyla 99.3 1E-12 3.4E-17 110.1 3.0 76 89-164 15-94 (94)
29 2dn8_A Acetyl-COA carboxylase 99.3 8.2E-12 2.8E-16 105.7 8.3 64 102-166 24-87 (100)
30 2ejm_A Methylcrotonoyl-COA car 99.2 2.5E-11 8.6E-16 102.5 9.0 67 102-168 21-87 (99)
31 2d5d_A Methylmalonyl-COA decar 99.2 3E-11 1E-15 95.8 8.9 63 102-164 12-74 (74)
32 2eq9_C Pyruvate dehydrogenase 99.2 6.8E-12 2.3E-16 88.6 4.2 39 203-241 2-40 (41)
33 2eq8_C Pyruvate dehydrogenase 99.2 9.5E-12 3.3E-16 87.4 4.3 37 204-240 2-38 (40)
34 1dcz_A Transcarboxylase 1.3S s 99.2 3.3E-11 1.1E-15 96.5 8.0 63 102-164 15-77 (77)
35 1bdo_A Acetyl-COA carboxylase; 99.2 2.7E-11 9.1E-16 98.0 7.1 57 108-164 24-80 (80)
36 2eq7_C 2-oxoglutarate dehydrog 99.2 6.6E-12 2.3E-16 88.2 2.8 38 203-240 1-38 (40)
37 3rnm_E Lipoamide acyltransfera 99.2 1E-11 3.5E-16 94.0 3.8 42 201-242 7-48 (58)
38 1w4i_A Pyruvate dehydrogenase 99.1 5.6E-11 1.9E-15 91.5 5.0 42 202-243 5-46 (62)
39 1w85_I Dihydrolipoyllysine-res 99.1 4.4E-11 1.5E-15 87.8 4.2 41 201-241 6-46 (49)
40 3n6r_A Propionyl-COA carboxyla 99.1 1.4E-10 4.7E-15 129.4 9.1 63 102-164 619-681 (681)
41 1bal_A Dihydrolipoamide succin 99.1 3.6E-11 1.2E-15 89.0 2.8 40 201-240 9-48 (51)
42 2coo_A Lipoamide acyltransfera 99.0 2.6E-10 8.9E-15 89.8 6.6 42 201-242 15-56 (70)
43 3va7_A KLLA0E08119P; carboxyla 99.0 3.3E-10 1.1E-14 133.2 8.8 61 103-163 1175-1235(1236)
44 3hbl_A Pyruvate carboxylase; T 99.0 4.6E-10 1.6E-14 131.5 9.1 65 102-166 1084-1148(1150)
45 3u9t_A MCC alpha, methylcroton 99.0 4.2E-11 1.4E-15 133.5 0.0 65 102-166 609-673 (675)
46 2f60_K Pyruvate dehydrogenase 99.0 2.3E-10 8E-15 88.5 3.7 41 202-242 10-50 (64)
47 2k32_A A; NMR {Campylobacter j 98.8 6.6E-09 2.3E-13 89.8 6.9 66 102-167 8-103 (116)
48 3bg3_A Pyruvate carboxylase, m 98.7 2.9E-09 1E-13 118.6 3.2 63 102-164 656-718 (718)
49 1zko_A Glycine cleavage system 98.7 1.4E-08 4.7E-13 90.3 6.1 70 92-167 39-116 (136)
50 2qf7_A Pyruvate carboxylase pr 98.7 1.1E-08 3.9E-13 120.0 5.8 63 102-164 1102-1164(1165)
51 1onl_A Glycine cleavage system 98.2 8.9E-07 3E-11 77.9 5.1 70 92-166 30-106 (128)
52 1hpc_A H protein of the glycin 98.2 5.2E-07 1.8E-11 79.7 3.5 69 92-166 30-106 (131)
53 3a7l_A H-protein, glycine clea 98.2 1.2E-06 4.2E-11 77.0 5.5 71 91-166 30-107 (128)
54 3ne5_B Cation efflux system pr 97.8 2.8E-05 9.6E-10 81.5 7.7 65 102-166 128-241 (413)
55 2f1m_A Acriflavine resistance 97.8 9E-06 3.1E-10 80.2 3.2 66 102-167 29-167 (277)
56 3lnn_A Membrane fusion protein 97.8 2.9E-05 9.8E-10 79.4 6.9 65 102-166 64-205 (359)
57 3fpp_A Macrolide-specific effl 97.7 3E-05 1E-09 78.7 6.0 65 102-166 38-190 (341)
58 3klr_A Glycine cleavage system 97.6 7.2E-05 2.5E-09 65.3 5.8 59 90-149 19-78 (125)
59 3mxu_A Glycine cleavage system 97.5 0.00013 4.6E-09 64.8 5.8 59 90-149 41-100 (143)
60 1vf7_A Multidrug resistance pr 97.4 4.7E-05 1.6E-09 78.5 3.1 65 102-166 50-173 (369)
61 3tzu_A GCVH, glycine cleavage 97.4 0.00014 4.8E-09 64.4 4.7 58 89-147 35-93 (137)
62 3hgb_A Glycine cleavage system 97.1 0.00053 1.8E-08 61.7 5.8 45 103-147 58-103 (155)
63 4dk0_A Putative MACA; alpha-ha 97.0 4.7E-05 1.6E-09 78.0 -2.6 64 102-165 39-190 (369)
64 2dn8_A Acetyl-COA carboxylase 96.6 0.001 3.6E-08 55.5 3.3 47 120-166 5-51 (100)
65 3na6_A Succinylglutamate desuc 96.2 0.011 3.8E-07 59.9 8.8 62 104-167 265-330 (331)
66 3cdx_A Succinylglutamatedesucc 96.2 0.013 4.3E-07 60.0 8.8 62 103-167 275-340 (354)
67 3fmc_A Putative succinylglutam 95.8 0.017 5.7E-07 59.5 8.0 61 103-165 297-363 (368)
68 1z6h_A Biotin/lipoyl attachmen 95.8 0.0099 3.4E-07 45.8 4.8 34 134-167 1-34 (72)
69 1dcz_A Transcarboxylase 1.3S s 95.7 0.012 4E-07 46.1 4.9 35 132-166 8-42 (77)
70 2d5d_A Methylmalonyl-COA decar 95.7 0.014 4.6E-07 45.2 5.1 35 133-167 6-40 (74)
71 2k32_A A; NMR {Campylobacter j 95.3 0.017 5.9E-07 49.0 4.9 34 133-166 2-35 (116)
72 1f3z_A EIIA-GLC, glucose-speci 95.2 0.017 5.9E-07 52.4 4.8 60 102-165 19-117 (161)
73 2kcc_A Acetyl-COA carboxylase 95.1 0.016 5.6E-07 46.5 3.9 36 132-167 5-40 (84)
74 2gpr_A Glucose-permease IIA co 94.9 0.021 7.3E-07 51.4 4.4 60 102-165 14-112 (154)
75 1ax3_A Iiaglc, glucose permeas 94.6 0.026 8.8E-07 51.3 4.3 60 102-165 19-117 (162)
76 2ejm_A Methylcrotonoyl-COA car 94.2 0.043 1.5E-06 45.4 4.5 38 130-167 12-49 (99)
77 2xha_A NUSG, transcription ant 94.0 0.048 1.7E-06 50.7 4.7 33 108-146 22-54 (193)
78 2jku_A Propionyl-COA carboxyla 93.9 0.029 1E-06 46.0 2.7 36 132-167 25-60 (94)
79 2f1m_A Acriflavine resistance 93.8 0.047 1.6E-06 53.2 4.5 54 112-166 3-56 (277)
80 2qj8_A MLR6093 protein; struct 93.5 0.17 5.8E-06 51.0 8.3 61 103-165 264-328 (332)
81 1bdo_A Acetyl-COA carboxylase; 93.4 0.057 2E-06 42.5 3.7 35 133-167 5-46 (80)
82 3lnn_A Membrane fusion protein 93.3 0.06 2E-06 54.5 4.5 56 111-166 35-91 (359)
83 3fpp_A Macrolide-specific effl 92.7 0.11 3.7E-06 52.2 5.3 56 110-166 10-65 (341)
84 2l5t_A Lipoamide acyltransfera 92.6 0.058 2E-06 42.1 2.5 32 136-167 11-42 (77)
85 1ghj_A E2, E2, the dihydrolipo 91.7 0.095 3.3E-06 41.1 2.8 31 137-167 12-42 (79)
86 3d4r_A Domain of unknown funct 91.6 0.35 1.2E-05 43.5 6.6 50 102-151 107-157 (169)
87 3crk_C Dihydrolipoyllysine-res 91.6 0.15 5.1E-06 40.9 3.9 31 137-167 16-46 (87)
88 2xhc_A Transcription antitermi 91.4 0.17 5.9E-06 51.5 5.0 33 107-145 61-93 (352)
89 1k8m_A E2 component of branche 90.8 0.27 9.1E-06 40.1 4.7 30 138-167 16-45 (93)
90 1gjx_A Pyruvate dehydrogenase; 90.6 0.15 5.1E-06 40.1 3.0 33 135-167 10-42 (81)
91 2dnc_A Pyruvate dehydrogenase 90.6 0.27 9.3E-06 40.5 4.7 29 139-167 20-48 (98)
92 1qjo_A Dihydrolipoamide acetyl 90.5 0.23 7.8E-06 38.9 3.9 28 140-167 14-41 (80)
93 2k7v_A Dihydrolipoyllysine-res 89.9 0.029 9.8E-07 45.0 -1.9 35 133-167 3-37 (85)
94 1vf7_A Multidrug resistance pr 89.8 0.18 6.1E-06 51.5 3.5 55 111-166 23-77 (369)
95 3ne5_B Cation efflux system pr 89.8 0.21 7.3E-06 51.8 4.2 57 110-166 98-156 (413)
96 2dne_A Dihydrolipoyllysine-res 89.4 0.24 8.2E-06 41.6 3.4 30 138-167 19-48 (108)
97 2xha_A NUSG, transcription ant 89.1 0.26 9E-06 45.7 3.7 46 111-162 85-158 (193)
98 2auk_A DNA-directed RNA polyme 88.1 0.56 1.9E-05 43.6 5.3 47 107-155 62-108 (190)
99 4dk0_A Putative MACA; alpha-ha 87.7 0.17 5.9E-06 51.2 1.6 55 111-166 12-66 (369)
100 1iyu_A E2P, dihydrolipoamide a 87.7 0.38 1.3E-05 37.6 3.3 28 102-129 48-75 (79)
101 1y8o_B Dihydrolipoyllysine-res 87.1 0.46 1.6E-05 41.3 3.8 30 138-167 39-68 (128)
102 1pmr_A Dihydrolipoyl succinylt 86.9 0.14 4.9E-06 40.2 0.4 32 137-168 13-44 (80)
103 4hvm_A Tlmii; PSI-biology, mid 85.6 13 0.00044 38.5 14.9 27 476-502 135-161 (493)
104 3n6r_A Propionyl-COA carboxyla 85.1 0.73 2.5E-05 51.1 5.0 36 132-167 612-647 (681)
105 3our_B EIIA, phosphotransferas 84.7 1.4 4.8E-05 40.5 5.9 60 102-165 41-139 (183)
106 3va7_A KLLA0E08119P; carboxyla 80.7 1.4 4.8E-05 52.1 5.3 37 131-167 1166-1202(1236)
107 3hbl_A Pyruvate carboxylase; T 79.6 1.4 4.9E-05 51.7 4.9 36 133-168 1078-1113(1150)
108 3bg3_A Pyruvate carboxylase, m 78.3 1.1 3.9E-05 49.7 3.4 36 133-168 650-685 (718)
109 3lu0_D DNA-directed RNA polyme 78.2 2.1 7.1E-05 50.3 5.6 45 108-154 1002-1046(1407)
110 2xhc_A Transcription antitermi 76.7 0.99 3.4E-05 45.9 2.1 28 111-144 125-152 (352)
111 2gpr_A Glucose-permease IIA co 76.3 1.2 4.2E-05 39.8 2.4 58 103-163 87-153 (154)
112 1l5a_A Amide synthase, VIBH; n 75.5 43 0.0015 33.6 14.3 28 476-503 119-146 (436)
113 3u9t_A MCC alpha, methylcroton 73.5 0.69 2.3E-05 51.2 0.0 35 133-167 603-637 (675)
114 2qf7_A Pyruvate carboxylase pr 71.8 2.5 8.7E-05 49.7 4.2 35 133-167 1096-1130(1165)
115 3our_B EIIA, phosphotransferas 68.3 2.7 9.1E-05 38.6 2.7 28 103-130 114-141 (183)
116 1zy8_K Pyruvate dehydrogenase 66.0 1.2 4.3E-05 42.4 0.0 31 138-168 15-45 (229)
117 2bco_A Succinylglutamate desuc 64.2 4 0.00014 41.3 3.4 51 109-166 279-329 (350)
118 3dva_I Dihydrolipoyllysine-res 64.0 1.4 4.9E-05 45.9 0.0 30 102-131 52-81 (428)
119 3fot_A 15-O-acetyltransferase; 58.3 52 0.0018 34.9 10.9 171 314-502 288-514 (519)
120 1f3z_A EIIA-GLC, glucose-speci 56.0 6.5 0.00022 35.3 2.9 26 104-129 93-118 (161)
121 1qpo_A Quinolinate acid phosph 54.6 8.4 0.00029 37.8 3.7 23 105-127 71-93 (284)
122 2bgh_A Vinorine synthase; VS, 53.5 10 0.00036 38.8 4.4 30 475-504 152-181 (421)
123 3tqv_A Nicotinate-nucleotide p 52.8 8.1 0.00028 38.0 3.2 21 107-127 77-97 (287)
124 1x1o_A Nicotinate-nucleotide p 52.8 8.1 0.00028 38.0 3.2 22 106-127 73-94 (286)
125 2xr7_A Malonyltransferase; xen 52.8 10 0.00035 39.2 4.3 29 475-503 157-185 (453)
126 2rkv_A Trichothecene 3-O-acety 52.6 11 0.00038 38.9 4.4 30 475-504 148-177 (451)
127 2e1v_A Acyl transferase; BAHD 52.4 12 0.0004 38.8 4.6 29 475-503 162-190 (454)
128 3l0g_A Nicotinate-nucleotide p 52.0 8.9 0.0003 37.9 3.4 22 106-127 85-106 (300)
129 2b7n_A Probable nicotinate-nuc 51.2 10 0.00035 36.9 3.7 21 107-127 60-80 (273)
130 2dsj_A Pyrimidine-nucleoside ( 51.0 14 0.00048 38.3 4.8 41 126-167 322-393 (423)
131 3fmc_A Putative succinylglutam 50.9 11 0.00037 38.4 4.0 33 132-165 290-322 (368)
132 1o4u_A Type II quinolic acid p 50.6 7.6 0.00026 38.2 2.6 22 106-127 72-93 (285)
133 1brw_A PYNP, protein (pyrimidi 50.6 16 0.00053 38.1 5.1 43 126-168 329-402 (433)
134 1ax3_A Iiaglc, glucose permeas 50.4 6.2 0.00021 35.5 1.8 28 103-130 92-119 (162)
135 3gnn_A Nicotinate-nucleotide p 50.2 9.4 0.00032 37.7 3.2 22 106-127 87-108 (298)
136 4g22_A Hydroxycinnamoyl-COA sh 50.1 14 0.00048 38.1 4.7 30 475-504 150-179 (439)
137 3na6_A Succinylglutamate desuc 49.1 15 0.00052 36.6 4.7 36 130-166 255-290 (331)
138 3paj_A Nicotinate-nucleotide p 49.1 10 0.00034 37.9 3.2 23 105-127 108-130 (320)
139 1qap_A Quinolinic acid phospho 48.1 11 0.00036 37.3 3.2 22 106-127 86-107 (296)
140 3d4r_A Domain of unknown funct 47.8 18 0.00062 32.5 4.3 43 116-169 95-137 (169)
141 3h5q_A PYNP, pyrimidine-nucleo 45.5 20 0.00067 37.4 4.9 37 128-164 334-401 (436)
142 2jbm_A Nicotinate-nucleotide p 42.6 12 0.00042 36.9 2.7 21 107-127 73-93 (299)
143 3it5_A Protease LASA; metallop 42.5 10 0.00035 34.6 2.0 19 109-127 85-103 (182)
144 3cdx_A Succinylglutamatedesucc 41.6 31 0.0011 34.6 5.6 40 126-166 261-300 (354)
145 2vsq_A Surfactin synthetase su 41.4 2.2E+02 0.0077 33.3 13.8 28 476-503 140-167 (1304)
146 3h5q_A PYNP, pyrimidine-nucleo 41.1 13 0.00045 38.7 2.8 32 100-131 374-405 (436)
147 2tpt_A Thymidine phosphorylase 40.4 19 0.00064 37.6 3.8 42 126-167 334-406 (440)
148 1uou_A Thymidine phosphorylase 37.9 32 0.0011 36.1 5.2 43 126-168 366-437 (474)
149 2dsj_A Pyrimidine-nucleoside ( 37.3 20 0.00067 37.2 3.3 32 100-131 363-394 (423)
150 1brw_A PYNP, protein (pyrimidi 37.2 20 0.00067 37.4 3.3 32 100-131 371-402 (433)
151 1zko_A Glycine cleavage system 36.6 20 0.00068 31.2 2.8 35 134-168 38-73 (136)
152 1uou_A Thymidine phosphorylase 35.2 22 0.00074 37.5 3.3 31 101-131 407-437 (474)
153 3it5_A Protease LASA; metallop 34.8 38 0.0013 30.7 4.6 65 87-165 32-104 (182)
154 1hpc_A H protein of the glycin 32.9 41 0.0014 28.9 4.2 34 135-168 30-64 (131)
155 2hsi_A Putative peptidase M23; 32.7 20 0.00069 35.0 2.4 20 146-165 232-251 (282)
156 3tuf_B Stage II sporulation pr 32.5 20 0.00068 34.3 2.3 22 106-127 132-153 (245)
157 1qwy_A Peptidoglycan hydrolase 32.4 21 0.00071 35.1 2.4 21 146-166 239-259 (291)
158 3c2e_A Nicotinate-nucleotide p 29.7 23 0.00079 34.8 2.3 21 107-127 69-95 (294)
159 1q9j_A PAPA5, polyketide synth 28.8 40 0.0014 33.5 4.0 28 476-503 117-144 (422)
160 2tpt_A Thymidine phosphorylase 28.8 20 0.00069 37.3 1.8 32 100-131 376-407 (440)
161 1onl_A Glycine cleavage system 27.7 15 0.00052 31.5 0.5 33 135-167 30-63 (128)
162 2lmc_B DNA-directed RNA polyme 27.3 8 0.00027 30.9 -1.2 15 110-124 68-82 (84)
163 3nyy_A Putative glycyl-glycine 27.2 28 0.00095 33.4 2.3 20 147-166 183-202 (252)
164 3tuf_B Stage II sporulation pr 25.6 57 0.0019 31.1 4.1 68 89-166 83-155 (245)
165 4etm_A LMPTP, low molecular we 24.5 54 0.0019 29.4 3.6 34 202-239 66-99 (173)
166 1l5a_A Amide synthase, VIBH; n 24.0 5.1E+02 0.018 25.3 13.6 142 335-504 231-403 (436)
167 3lu0_D DNA-directed RNA polyme 23.7 22 0.00076 41.9 1.0 19 109-127 1107-1125(1407)
168 1q9j_A PAPA5, polyketide synth 23.6 5.1E+02 0.017 25.1 15.0 66 335-412 234-314 (422)
169 2vsq_A Surfactin synthetase su 23.2 5.3E+02 0.018 30.1 12.8 149 335-503 251-426 (1304)
170 2gu1_A Zinc peptidase; alpha/b 23.1 37 0.0013 34.2 2.4 21 146-166 284-304 (361)
171 3csq_A Morphogenesis protein 1 22.0 25 0.00084 35.2 0.9 21 108-128 250-270 (334)
172 3a7l_A H-protein, glycine clea 21.9 88 0.003 26.6 4.3 34 135-168 31-65 (128)
173 1baz_A ARC repressor; transcri 21.1 1.8E+02 0.0063 20.5 5.2 47 303-357 6-52 (53)
174 1yw4_A Succinylglutamate desuc 21.1 22 0.00074 35.6 0.2 37 110-146 278-319 (341)
175 3vr4_A V-type sodium ATPase ca 20.8 1.4E+02 0.0047 32.2 6.4 53 110-165 130-185 (600)
176 2jgp_A Tyrocidine synthetase 3 20.2 77 0.0026 32.7 4.3 28 477-504 216-243 (520)
177 2auk_A DNA-directed RNA polyme 20.0 51 0.0018 30.1 2.5 19 109-127 168-186 (190)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=1.2e-93 Score=756.98 Aligned_cols=411 Identities=35% Similarity=0.577 Sum_probs=39.4
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.++++
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYE 82 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999875543
Q ss_pred CCCCC--C--CC---CCCCCCCCCCC---CCCC--C-C-CCCCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHH
Q 010300 170 VPTPS--S--DV---LESVKPPGSEN---SPDS--K-L-NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED 235 (513)
Q Consensus 170 ~~~~~--~--~~---~~~~~~~~~~~---~~~~--~-~-~~~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~D 235 (513)
..... . .. +.+........ ..+. . + ......++.+||+||+||+|+||||+.|+|||++|||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~D 162 (428)
T 3dva_I 83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED 162 (428)
T ss_dssp ---------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTTT
T ss_pred ccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHHH
Confidence 22111 0 00 00000000000 0000 0 0 00112346899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCcccccchhhhccCCCCCCCcccccccCCCCCccccCchhHHHHHHHHHHhc-cccEEEEeeeee
Q 010300 236 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN 314 (513)
Q Consensus 236 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiD 314 (513)
|++|+...... .++.+.. ... ..+..+ ........++++|++++||.|+++|++|+ ++||||++.+||
T Consensus 163 V~~~~~~~~~~-~~~~~~~-~~~-------~~~~~~--~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evD 231 (428)
T 3dva_I 163 IDAFLAGGAKP-APAAAEE-KAA-------PAAAKP--ATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD 231 (428)
T ss_dssp TTTTSCC-------------------------------------------------------------------------
T ss_pred HHHHhhccccc-ccccccc-ccc-------cCCCCc--cccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEe
Confidence 99997532111 1100000 000 000000 00011123578999999999999999995 899999999999
Q ss_pred chHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCCCeEeeeeecCC
Q 010300 315 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQ 394 (513)
Q Consensus 315 vt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~ 394 (513)
||+|+++|+++|+..++.|.|+||++||+||+++||++||+||++|++++++|++|+++||||||++++||++|||++++
T Consensus 232 vt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~ 311 (428)
T 3dva_I 232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD 311 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCC
Confidence 99999999999876667789999999999999999999999999998754589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEEeeEEcCCCceeeEcE
Q 010300 395 SLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPI 474 (513)
Q Consensus 395 ~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~ 474 (513)
+++|.+|+++++++.+++|+|+|.++|++||||||||+||+|+++|+||||+||++||++|+++++|++ .+|++++|++
T Consensus 312 ~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~-~~g~i~~r~~ 390 (428)
T 3dva_I 312 RKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPM 390 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEE-ECCEEEEeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 5889999999
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|+|||+||||+|||+|+++||++|+++||||+.|||++
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~ 428 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLMEA 428 (428)
T ss_dssp --------------------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 99999999999999999999999999999999999875
No 2
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=4.1e-62 Score=484.64 Aligned_cols=234 Identities=47% Similarity=0.806 Sum_probs=222.8
Q ss_pred CCCccccCchhHHHHHHHHHHhccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 010300 280 PDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (513)
Q Consensus 280 ~~~~~vp~s~~rr~ia~~m~~s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~ 359 (513)
..++++|++++||.|+++|++|+++|||+++.+||+|+|+++|+++|+..++.|.|+||++|++||+++||++||+||++
T Consensus 29 ~~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~ 108 (262)
T 2ii3_A 29 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNAS 108 (262)
T ss_dssp CCCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred CCcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence 34678999999999999999998899999999999999999999987533346789999999999999999999999999
Q ss_pred EccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCcc
Q 010300 360 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 439 (513)
Q Consensus 360 ~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~ 439 (513)
|+++++++++|+++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus 109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~ 188 (262)
T 2ii3_A 109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTY 188 (262)
T ss_dssp ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSC
T ss_pred EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccc
Confidence 98765689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcCC
Q 010300 440 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 513 (513)
Q Consensus 440 ~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~~ 513 (513)
|+|||||||+|||++|+++++|++++||+++++.+|+|||+||||+|||+++|+||+.|+++||+|+.||+++|
T Consensus 189 ~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~~~~ 262 (262)
T 2ii3_A 189 AKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 262 (262)
T ss_dssp EECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHHCC
T ss_pred eECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHhhcC
Confidence 99999999999999999999999976789999999999999999999999999999999999999999999886
No 3
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=3.4e-60 Score=467.23 Aligned_cols=224 Identities=32% Similarity=0.538 Sum_probs=214.6
Q ss_pred ccccCchhHHHHHHHHHHhc-cccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEc
Q 010300 283 KTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN 361 (513)
Q Consensus 283 ~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~ 361 (513)
++ |++++||.|+++|++|+ ++|||+++.+||+|+|+++|+++|+ .|.|+||++|++||+++||+++|+||++|+
T Consensus 16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~----~~~kls~~~~iikAva~AL~~~P~~Na~~~ 90 (250)
T 3l60_A 16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS----AAPEITPFALTLRLLVIALKHNVILNSTWV 90 (250)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEE
T ss_pred CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEe
Confidence 44 99999999999999996 8999999999999999999999964 467999999999999999999999999998
Q ss_pred cC--CceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCcc
Q 010300 362 EE--SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 439 (513)
Q Consensus 362 ~d--~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~ 439 (513)
++ +++|++|+++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus 91 ~~~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ 170 (250)
T 3l60_A 91 DSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDD 170 (250)
T ss_dssp CTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSS
T ss_pred ccCCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcce
Confidence 65 4589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 440 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 440 ~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|+||||+||+|||++|+++++|++. +|+++++++|+|||+||||+|||+++|+||+.|+++||+|+.|+.++
T Consensus 171 ftpIinppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~~ 242 (250)
T 3l60_A 171 GVPVINHPEAAILGLGAIKPRPVVV-GGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242 (250)
T ss_dssp CCCCCCTTCSEEEEECCCEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTTC
T ss_pred eEeeeCCCCceEEEecceEEEeEEE-CCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCcc
Confidence 9999999999999999999999995 78999999999999999999999999999999999999999998765
No 4
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=2.8e-60 Score=467.35 Aligned_cols=229 Identities=26% Similarity=0.449 Sum_probs=217.2
Q ss_pred CCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 010300 281 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (513)
Q Consensus 281 ~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~ 359 (513)
+.+++|++++||.|+++|++| +++|||+++.+||+|+|+++|+++|+..++.|.++||++|++||+++||++||+||++
T Consensus 14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 346789999999999999999 5899999999999999999999987543345789999999999999999999999999
Q ss_pred EccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCcc
Q 010300 360 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 439 (513)
Q Consensus 360 ~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~ 439 (513)
|+++++++++|+++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 173 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA 173 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence 98754589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 440 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 440 ~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
|+||+||||+|||++|+++++|+++ ||+++++++|+|||+||||+|||+++|+||++||++||+|+.||+
T Consensus 174 ~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 243 (243)
T 1dpb_A 174 FTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp CCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred eECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999995 789999999999999999999999999999999999999998875
No 5
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=9.6e-61 Score=467.83 Aligned_cols=228 Identities=26% Similarity=0.518 Sum_probs=216.3
Q ss_pred CccccCchhHHHHHHHHHHhc-cccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 010300 282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (513)
Q Consensus 282 ~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~~ 359 (513)
++++|++++||.||++|++|+ ++|||+++.++|+|+|+++|+++|+... +.|.|+||++|++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 456899999999999999995 6999999999999999999999875321 34679999999999999999999999999
Q ss_pred EccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCcc
Q 010300 360 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 439 (513)
Q Consensus 360 ~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~ 439 (513)
|+++ ++++|+++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|+++|++||||||||+||+|+.+
T Consensus 84 ~~~~--~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~ 161 (233)
T 1scz_A 84 IDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM 161 (233)
T ss_dssp EETT--EEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred EeCC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence 9865 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 440 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 440 ~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|+|||||||+|||++|+++++|+++ ||+++++++|||||+||||+|||+++|+||+.||++||+|+.||+++
T Consensus 162 ~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~~~ 233 (233)
T 1scz_A 162 STPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233 (233)
T ss_dssp CCCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred eEcccCCCCcEEEEccccEEEEEEE-CCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 9999999999999999999999995 78999999999999999999999999999999999999999999875
No 6
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-60 Score=468.88 Aligned_cols=228 Identities=29% Similarity=0.482 Sum_probs=215.6
Q ss_pred CCCccccCchhHHHHHHHHHHhc-cccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccc
Q 010300 280 PDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMN 357 (513)
Q Consensus 280 ~~~~~vp~s~~rr~ia~~m~~s~-~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN 357 (513)
.+++++|++++||.||++|++|+ ++|||+++.+||+|+|+++|+++|+.++ +.|.|+||++|++||+++||+++|+||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 35688999999999999999995 8999999999999999999999875332 236899999999999999999999999
Q ss_pred eEEccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCC
Q 010300 358 SCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGG 437 (513)
Q Consensus 358 ~~~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~ 437 (513)
++|+++ ++++++++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+
T Consensus 96 a~~~~~--~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~ 173 (256)
T 3mae_A 96 STWAGD--KIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173 (256)
T ss_dssp EEEETT--EEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred hEEecC--EEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence 999865 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 438 KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 438 ~~~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
.+|+|||||||+|||++|+++++|+++ +|+++++++|+|||+||||||||+++|+||+.|+++||+|+.+..
T Consensus 174 ~~ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~~ 245 (256)
T 3mae_A 174 VQSMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENT 245 (256)
T ss_dssp SEEECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTC
T ss_pred cceEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHHH
Confidence 999999999999999999999999995 689999999999999999999999999999999999999986644
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=4.9e-59 Score=453.20 Aligned_cols=219 Identities=32% Similarity=0.560 Sum_probs=207.6
Q ss_pred CCccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 010300 281 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (513)
Q Consensus 281 ~~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~ 359 (513)
+++++|++++||.||++|++| +++|||+++.+||+|+|+++|+++|+. |.|+||++|++||+++||++||+||++
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~----g~kls~~~~~ikA~~~Al~~~P~~N~~ 80 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR----NRKVTVTGFLARIVPSILKQYPYLNAI 80 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT----TCCCCHHHHHHHHHHHHHHHSGGGSBB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHhCHHhheE
Confidence 457899999999999999998 589999999999999999999999753 789999999999999999999999999
Q ss_pred EccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCcc
Q 010300 360 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 439 (513)
Q Consensus 360 ~~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~ 439 (513)
|+++++++++|+++|||+||++++||++|||++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus 81 ~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~ 160 (224)
T 3rqc_A 81 YDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIM 160 (224)
T ss_dssp CCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSE
T ss_pred EeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccc
Confidence 98765689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhhcC
Q 010300 440 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 512 (513)
Q Consensus 440 ~tpii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~ 512 (513)
|+||+||||++||++|+++++|+ +++|+|||+||||+|||+++|+||++|+++||+|+.||+++
T Consensus 161 ~tpiin~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~~ 224 (224)
T 3rqc_A 161 STPIINYPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224 (224)
T ss_dssp EECCCCTTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC--
T ss_pred eEeccCCCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 99999999999999999998764 78999999999999999999999999999999999999874
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=3.6e-59 Score=458.71 Aligned_cols=226 Identities=24% Similarity=0.416 Sum_probs=214.1
Q ss_pred CccccCchhHHHHHHHHHHh-ccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEE
Q 010300 282 DKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360 (513)
Q Consensus 282 ~~~vp~s~~rr~ia~~m~~s-~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~ 360 (513)
.+++|++++||.|+++|++| +++|||+++.++|+|+|+++|+++|+..+.. .++||++|++||+++||++||+||++|
T Consensus 12 ~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~-~kls~~~~~ikAv~~Al~~~P~~Na~~ 90 (239)
T 3b8k_A 12 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSSW 90 (239)
T ss_dssp CCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTS-SCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred ceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence 46789999999999999999 5899999999999999999999987643322 599999999999999999999999999
Q ss_pred ccCCceEEEcccceEEeEEecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccc
Q 010300 361 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFG 440 (513)
Q Consensus 361 ~~d~~~i~~~~~i~igiAv~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~ 440 (513)
+++ ++++|+++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|+.||||||||+||+|+++|
T Consensus 91 ~~~--~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f 168 (239)
T 3b8k_A 91 MDT--VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF 168 (239)
T ss_dssp CCC--SSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred ECC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence 865 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCceeEEEecceEEeeEEc-CCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHHhh
Q 010300 441 APLLNLPEVAIIAMGRIEKVPRLS-DDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 510 (513)
Q Consensus 441 tpii~~pq~ail~iG~i~~~p~~~-~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 510 (513)
+||+|+||++||++|+++++|+++ +||+++++++|+|||+||||+|||+++|+||++||++||+|+.||+
T Consensus 169 tpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 239 (239)
T 3b8k_A 169 SAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp CCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred ECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999995 5789999999999999999999999999999999999999998875
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.9e-46 Score=430.62 Aligned_cols=212 Identities=25% Similarity=0.362 Sum_probs=176.3
Q ss_pred HHHHhccccEEEEeeeeechHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCC--ceEEEcccc
Q 010300 297 TMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES--LEVILKGSH 373 (513)
Q Consensus 297 ~m~~s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~-~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~--~~i~~~~~i 373 (513)
+|++|+++|||+++.+||+|+|+++|+++|+..+ +.|.|+||++|++||+++||++||+||++|++++ .+|+++++|
T Consensus 1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v 80 (1113)
T 2xt6_A 1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT 80 (1113)
T ss_dssp ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence 4778888999999999999999999999986432 4578999999999999999999999999998652 279999999
Q ss_pred eEEeEEecC--CC---eEeeeeecCCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEeCCCCCCccceeccCCCc
Q 010300 374 NIGIAMATQ--HG---LAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPE 448 (513)
Q Consensus 374 ~igiAv~~~--~G---l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~ggtftISnlg~~G~~~~tpii~~pq 448 (513)
||||||+++ +| |++|||+++++++|.+|+++++++++++|+|+|+++|++||||||||+||+|+.+|+|||||||
T Consensus 81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq 160 (1113)
T 2xt6_A 81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ 160 (1113)
T ss_dssp CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence 999999997 67 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecceEEeeEEcCC-----CceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHH
Q 010300 449 VAIIAMGRIEKVPRLSDD-----GNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELL 508 (513)
Q Consensus 449 ~ail~iG~i~~~p~~~~~-----G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P~~l 508 (513)
+|||++|+++++|+++++ |+++++++|+|||+||||||||+++|+||+.|+++||+|+.|
T Consensus 161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w 225 (1113)
T 2xt6_A 161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF 225 (1113)
T ss_dssp SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence 999999999999988532 689999999999999999999999999999999999999854
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=1.6e-43 Score=342.95 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=165.7
Q ss_pred HhccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEE
Q 010300 300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM 379 (513)
Q Consensus 300 ~s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv 379 (513)
++.++|||+++.+||||+|+++||+. ++||++|++||+++||+++|+||++|+++ ++++++++|||+||
T Consensus 26 ~~~~~P~~t~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~v~igiAV 94 (219)
T 1q23_A 26 QSVAQCTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDSVHPCYTV 94 (219)
T ss_dssp TTTTCEEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESCCEEEEEE
T ss_pred cCCCCcEEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEecccCeEEEE
Confidence 45689999999999999999999864 89999999999999999999999999854 89999999999999
Q ss_pred -ecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcC-CCCC-CCCCCCeEEEEeCCCCCCccceeccCCC-c--eeEEE
Q 010300 380 -ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNP-ADNSGGTITLSNIGAIGGKFGAPLLNLP-E--VAIIA 453 (513)
Q Consensus 380 -~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~-~d~~ggtftISnlg~~G~~~~tpii~~p-q--~ail~ 453 (513)
++++||++||+.. +.+++.+|+++++++++++|+| +|.+ +|+ ||||||||+||+|.+.+.+..++| + ++||+
T Consensus 95 ~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~~~~~pIi~ 172 (219)
T 1q23_A 95 FHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFT 172 (219)
T ss_dssp EETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCTTCCSCEEE
T ss_pred EecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCccceeEEEe
Confidence 9999999999985 6789999999999999999998 6975 888 999999999997655555544433 2 69999
Q ss_pred ecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 010300 454 MGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 505 (513)
Q Consensus 454 iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~P 505 (513)
+|+++++ +| +.+|||||+||||+|||+++|+||++||++||+|
T Consensus 173 ~G~~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~ 215 (219)
T 1q23_A 173 MGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW 215 (219)
T ss_dssp ECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cccEEEE-----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCc
Confidence 9999874 45 7999999999999999999999999999999984
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=6e-43 Score=337.60 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=165.6
Q ss_pred hccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEE-
Q 010300 301 AAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM- 379 (513)
Q Consensus 301 s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv- 379 (513)
+.++|||+++.++|+|+|+++||+. ++||+++++||+++||+++|+||++|+++ ++++++++|||+||
T Consensus 22 ~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~v~igiAVf 90 (213)
T 3cla_A 22 HRLPCGFSLTSKIDITTLKKSLDDS---------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDSVDPQFTVF 90 (213)
T ss_dssp HTSCCEEEEEEEEECHHHHHHHHTS---------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESCCEEEEEEE
T ss_pred CCCCceEEEEEEEEHHHHHHHHHHh---------CCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEeccceeEEEE
Confidence 4579999999999999999999753 89999999999999999999999999854 89999999999999
Q ss_pred ecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhcC-CCCC-CCCCCCeEEEEeCCCCCCccceeccCCC---ceeEEEe
Q 010300 380 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNP-ADNSGGTITLSNIGAIGGKFGAPLLNLP---EVAIIAM 454 (513)
Q Consensus 380 ~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~-~d~~ggtftISnlg~~G~~~~tpii~~p---q~ail~i 454 (513)
++++||++||+.. +.+++.+|+++++++++++|+| +|.+ +|++||||||||+||++.+.+..-.+.+ ..+|+++
T Consensus 91 ~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~ 169 (213)
T 3cla_A 91 HQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITM 169 (213)
T ss_dssp ETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEEE
T ss_pred eCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEEe
Confidence 9999999999886 6799999999999999999996 9988 7899999999999998776664333333 3589999
Q ss_pred cceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 455 GRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 455 G~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
|+++++ +| +.+|||||+||||+|||+++|+||++||++||+
T Consensus 170 G~~~~~-----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 170 AKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp ECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred eEEEEE-----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 999874 56 789999999999999999999999999999998
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-41 Score=326.41 Aligned_cols=182 Identities=13% Similarity=0.161 Sum_probs=163.8
Q ss_pred hccccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEE-
Q 010300 301 AAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM- 379 (513)
Q Consensus 301 s~~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv- 379 (513)
+.++|||+++.++|||+|+++||+. ++||+++++||+++||+++|+||++|+++ ++|++++++|||+||
T Consensus 24 ~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~-~~i~~~~~i~igvAVf 93 (217)
T 2i9d_A 24 HFQNPQLSITSEVECGGARQRAKAA---------GQSFFLHYLYAVLRAANEIPEFRYRIDPD-GRVVLYDTIDMLSPIK 93 (217)
T ss_dssp TCSBCEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHSGGGGEEECTT-SCEEEESCCEEEEEEE
T ss_pred CCCCceEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhCHHhheEEcCC-CEEEEecccCeEEEEE
Confidence 4579999999999999999999874 89999999999999999999999999832 389999999999999
Q ss_pred ecCCCeEeeeeecCCCCCHHHHHHHHHHHHHHhhc-CCCCCC------CCCCCeEEEEeCCCCCCccceeccCCC---ce
Q 010300 380 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKD-NELNPA------DNSGGTITLSNIGAIGGKFGAPLLNLP---EV 449 (513)
Q Consensus 380 ~~~~Gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~-~~l~~~------d~~ggtftISnlg~~G~~~~tpii~~p---q~ 449 (513)
++++||++|++. ++.+++.+|+++++++++++|+ |+|.++ |++||||||||+||++.+.++...+++ ..
T Consensus 94 ~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~ 172 (217)
T 2i9d_A 94 IKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNY 172 (217)
T ss_dssp CSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSS
T ss_pred ecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceE
Confidence 999999999986 5678999999999999999999 599985 999999999999998777664444433 35
Q ss_pred eEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHh
Q 010300 450 AIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLI 502 (513)
Q Consensus 450 ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~L 502 (513)
+|+++|++.++ +| +.+|||||++|||+|||+|+|+||+.||++|
T Consensus 173 PIi~~Gk~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 173 PLLNAGKAIIR-----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp CEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEecceEEEE-----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 89999999874 56 7899999999999999999999999999987
No 13
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.96 E-value=4.1e-31 Score=256.69 Aligned_cols=154 Identities=22% Similarity=0.358 Sum_probs=38.7
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCe-eecccEEEEEecCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGD 167 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~-v~~G~~l~~i~~~~ 167 (513)
.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|..++
T Consensus 3 ~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~~ 82 (229)
T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 82 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEeccC
Confidence 36899999999999999999999999999999999999999999999999999999999999997 99999999997543
Q ss_pred CCCCC---CCC-CCCCC-CCCCC-C-CCCCC-CCCCC----CCCCCcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHH
Q 010300 168 SAVPT---PSS-DVLES-VKPPG-S-ENSPD-SKLNK----DTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED 235 (513)
Q Consensus 168 ~~~~~---~~~-~~~~~-~~~~~-~-~~~~~-~~~~~----~~~~~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~D 235 (513)
+.... +.. ..+.. ..... . ..... ..+.. ....+.++||+||+||+|+||||+.|.|||++|||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V~GTGp~GRItk~D 162 (229)
T 1zy8_K 83 EDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162 (229)
T ss_dssp -----------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHHH
T ss_pred ccccccccccccccccccccCCCcccccccccCCCcccccccccccccCChHHHHHHHHcCCCccccCCCCCCCceehHH
Confidence 22110 000 00000 00000 0 00000 00000 011246789999999999999999999999999999999
Q ss_pred HHHHHHh
Q 010300 236 VLKYAVQ 242 (513)
Q Consensus 236 V~~~~~~ 242 (513)
|++|++.
T Consensus 163 V~~~~~~ 169 (229)
T 1zy8_K 163 ALKLVQL 169 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999875
No 14
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.76 E-value=2.2e-18 Score=152.33 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=77.4
Q ss_pred CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCC-eeecccEEEEEec
Q 010300 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVV 165 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~-~v~~G~~l~~i~~ 165 (513)
...++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|..
T Consensus 25 p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 25 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred CcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 336899999999999999999999999999999999999999999999999999999999999998 8999999999986
Q ss_pred CCC
Q 010300 166 GDS 168 (513)
Q Consensus 166 ~~~ 168 (513)
.++
T Consensus 105 ~~~ 107 (128)
T 1y8o_B 105 KEA 107 (128)
T ss_dssp SGG
T ss_pred Ccc
Confidence 543
No 15
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.76 E-value=4.7e-18 Score=140.59 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=76.4
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCC-eeecccEEEEEecCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD 167 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~-~v~~G~~l~~i~~~~ 167 (513)
.++++||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.+...+
T Consensus 5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 5889999999999999999999999999999999999999999999999999999999999999 899999999998654
Q ss_pred C
Q 010300 168 S 168 (513)
Q Consensus 168 ~ 168 (513)
+
T Consensus 85 ~ 85 (87)
T 3crk_C 85 A 85 (87)
T ss_dssp T
T ss_pred C
Confidence 3
No 16
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.75 E-value=4e-18 Score=142.87 Aligned_cols=81 Identities=40% Similarity=0.738 Sum_probs=77.0
Q ss_pred CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 87 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 87 ~~~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
...++++||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|...
T Consensus 2 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CcceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q 010300 167 D 167 (513)
Q Consensus 167 ~ 167 (513)
+
T Consensus 82 ~ 82 (93)
T 1k8m_A 82 A 82 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 17
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=142.60 Aligned_cols=80 Identities=20% Similarity=0.441 Sum_probs=76.5
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCee-ecccEEEEEecCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIV-KVGETLLKLVVGD 167 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v-~~G~~l~~i~~~~ 167 (513)
.++++||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|+.|...+
T Consensus 7 ~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 7 GIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp CEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred cEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 478999999999999999999999999999999999999999999999999999999999999998 9999999998754
Q ss_pred C
Q 010300 168 S 168 (513)
Q Consensus 168 ~ 168 (513)
+
T Consensus 87 ~ 87 (98)
T 2dnc_A 87 E 87 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 18
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=143.97 Aligned_cols=79 Identities=29% Similarity=0.363 Sum_probs=76.0
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCC-eeecccEEEEEecCC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD 167 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~-~v~~G~~l~~i~~~~ 167 (513)
.++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|...+
T Consensus 7 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 7 GQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp CEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred ceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 4889999999999999999999999999999999999999999999999999999999999999 899999999998653
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.69 E-value=4.8e-17 Score=131.87 Aligned_cols=76 Identities=25% Similarity=0.460 Sum_probs=73.9
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999875
No 20
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.65 E-value=3.3e-16 Score=126.27 Aligned_cols=75 Identities=41% Similarity=0.695 Sum_probs=73.1
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999885
No 21
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.64 E-value=1.6e-17 Score=135.21 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=73.4
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
++++||++|+++.+|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+.|..|++|+.+..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999998864
No 22
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.64 E-value=6.8e-16 Score=125.25 Aligned_cols=76 Identities=30% Similarity=0.469 Sum_probs=73.0
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
++++||++|++ +|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 67999999998 99999999999999999999999999999999999999999999999999999999999998643
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.60 E-value=3.3e-15 Score=120.96 Aligned_cols=75 Identities=28% Similarity=0.390 Sum_probs=71.3
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
++++||++|++ + +|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 47899999996 7 999999999999999999999999999999999999999999999999999999999998643
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.57 E-value=1.2e-15 Score=124.11 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=73.2
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.++++||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.+...
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 3679999999 6899999999999999999999999999999999999999999999999999999999999999754
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.42 E-value=1.9e-14 Score=118.23 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=68.1
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
++|++|++ |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 45788888 8999999999999999999999999999999999999999999999999999999999998654
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.34 E-value=2.7e-12 Score=101.49 Aligned_cols=65 Identities=32% Similarity=0.417 Sum_probs=62.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999999999999754
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=106.66 Aligned_cols=65 Identities=18% Similarity=0.397 Sum_probs=62.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.+|+|.+|++++||.|++||+|++||++|+.++|+||++|+|.+++ ++|+.|..|++|+.|...+
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 5899999999999999999999999999999999999999999999 9999999999999997643
No 28
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.28 E-value=1e-12 Score=110.08 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=29.1
Q ss_pred eEEEecCCCCCCC----ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 89 IVDVPLAQTGEGI----AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 89 ~~~~~~p~lg~~~----~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..++.+|...+.. ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++.+++|+.|..|++|+.|+
T Consensus 15 ~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 3568889888764 599999999999999999999999999999999999999999999999999999999998773
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.2e-12 Score=105.67 Aligned_cols=64 Identities=17% Similarity=0.402 Sum_probs=61.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|. +++++|+.|..|++|+.|...
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~ 87 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELD 87 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence 5899999999999999999999999999999999999999999 999999999999999999754
No 30
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=102.49 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=63.8
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999986544
No 31
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.23 E-value=3e-11 Score=95.82 Aligned_cols=63 Identities=29% Similarity=0.381 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|.+|++++||.|++||+|++++++|....+.||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999999874
No 32
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.22 E-value=6.8e-12 Score=88.63 Aligned_cols=39 Identities=46% Similarity=0.632 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHH
Q 010300 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (513)
Q Consensus 203 ~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~ 241 (513)
.+||+||+||+|+|||++.|.|||++|||+++||++|+.
T Consensus 2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 579999999999999999999999999999999999873
No 33
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.20 E-value=9.5e-12 Score=87.40 Aligned_cols=37 Identities=41% Similarity=0.681 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHH
Q 010300 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (513)
Q Consensus 204 asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~ 240 (513)
+||+||++|+|+|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6999999999999999999999999999999999986
No 34
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.20 E-value=3.3e-11 Score=96.49 Aligned_cols=63 Identities=29% Similarity=0.372 Sum_probs=60.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|.|.+|++++||.|++||+|++++++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999874
No 35
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.19 E-value=2.7e-11 Score=97.98 Aligned_cols=57 Identities=26% Similarity=0.410 Sum_probs=54.7
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 369999999999999999999999999999999999999999999999999999874
No 36
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.18 E-value=6.6e-12 Score=88.20 Aligned_cols=38 Identities=39% Similarity=0.621 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHH
Q 010300 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (513)
Q Consensus 203 ~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~ 240 (513)
++||+||+||+|+|||++.|.|||++|||+++||++|+
T Consensus 1 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 36999999999999999999999999999999999876
No 37
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.18 E-value=1e-11 Score=94.04 Aligned_cols=42 Identities=55% Similarity=0.791 Sum_probs=39.2
Q ss_pred CcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHh
Q 010300 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (513)
Q Consensus 201 ~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~ 242 (513)
.+.+||+||+||+|+||||+.|+|||++|||+++||++|+..
T Consensus 7 ~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp -CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 468999999999999999999999999999999999999864
No 38
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=99.11 E-value=5.6e-11 Score=91.47 Aligned_cols=42 Identities=45% Similarity=0.632 Sum_probs=39.4
Q ss_pred cccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHhc
Q 010300 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 243 (513)
Q Consensus 202 ~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~~ 243 (513)
..+||++|+||+|+||||+.|.|||++|||+++||++|+...
T Consensus 5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~~ 46 (62)
T 1w4i_A 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET 46 (62)
T ss_dssp SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhcc
Confidence 568999999999999999999999999999999999998753
No 39
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=99.11 E-value=4.4e-11 Score=87.81 Aligned_cols=41 Identities=44% Similarity=0.702 Sum_probs=38.5
Q ss_pred CcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHH
Q 010300 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 241 (513)
Q Consensus 201 ~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~ 241 (513)
...+||++|+||+|+|||++.|.|||++|||+++||++|+.
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 35689999999999999999999999999999999999974
No 40
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.08 E-value=1.4e-10 Score=129.44 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=61.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 479999999999999999999999999999999999999999999999999999999999884
No 41
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=99.08 E-value=3.6e-11 Score=89.02 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=37.6
Q ss_pred CcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHH
Q 010300 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (513)
Q Consensus 201 ~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~ 240 (513)
...+||++|+||+|+|||++.|.|||++|||+++||++|+
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence 4578999999999999999999999999999999999875
No 42
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=89.80 Aligned_cols=42 Identities=52% Similarity=0.763 Sum_probs=39.4
Q ss_pred CcccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHh
Q 010300 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (513)
Q Consensus 201 ~~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~ 242 (513)
...++|+||+||+|+||||+.|.|||++|||+++||++|+..
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 457899999999999999999999999999999999999864
No 43
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.02 E-value=3.3e-10 Score=133.24 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=59.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
.|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|.+|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 5999999999999999999999999999999999999999999999999999999999987
No 44
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.00 E-value=4.6e-10 Score=131.48 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=61.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 47999999999999999999999999999999999999999999999999999999999999754
No 45
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.99 E-value=4.2e-11 Score=133.51 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+++
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 47999999999999999999999999999999999999999999999999999999999999754
No 46
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.98 E-value=2.3e-10 Score=88.47 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=38.8
Q ss_pred cccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHHHHh
Q 010300 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (513)
Q Consensus 202 ~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~~~~ 242 (513)
..+||+||+||+|+|||++.|+|||++|||+++||++|+..
T Consensus 10 ~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 10 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 56899999999999999999999999999999999999864
No 47
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.80 E-value=6.6e-09 Score=89.78 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=61.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcce-----------------------------eeecCCCeEEEEEeeCCCC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATI-----------------------------EITSRYKGKVAQLLHAPGN 152 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-----------------------------~i~a~~~G~v~~i~~~~g~ 152 (513)
..|.|.+|+|++||.|++||+|+++++.++.. .|.||++|+|.++.+.+|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 58999999999999999999999999987664 8999999999999999999
Q ss_pred eeecc-cEEEEEecCC
Q 010300 153 IVKVG-ETLLKLVVGD 167 (513)
Q Consensus 153 ~v~~G-~~l~~i~~~~ 167 (513)
.|..| ++|+.|...+
T Consensus 88 ~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 88 YVSASTTELVRVTNLN 103 (116)
T ss_dssp EECTTTSCCEEEECSC
T ss_pred EEcCCCcEEEEEECCC
Confidence 99999 9999998654
No 48
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.73 E-value=2.9e-09 Score=118.56 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=60.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 389999999999999999999999999999999999999999999999999999999998763
No 49
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.71 E-value=1.4e-08 Score=90.34 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=59.7
Q ss_pred EecCCCCCCCceEEEEEEE-cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEE---eeCCCCeee---ccc-EEEEE
Q 010300 92 VPLAQTGEGIAECELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL---LHAPGNIVK---VGE-TLLKL 163 (513)
Q Consensus 92 ~~~p~lg~~~~eg~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i---~~~~g~~v~---~G~-~l~~i 163 (513)
+.+|.+|+ |+.+. +++||.|++||+||+||+||+..+|.||.+|+|.++ +++.|+.|. .|+ .|+.|
T Consensus 39 ~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i 112 (136)
T 1zko_A 39 HAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKM 112 (136)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred hhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEE
Confidence 44666665 34443 499999999999999999999999999999999999 888999988 888 99999
Q ss_pred ecCC
Q 010300 164 VVGD 167 (513)
Q Consensus 164 ~~~~ 167 (513)
...+
T Consensus 113 ~~~~ 116 (136)
T 1zko_A 113 EISD 116 (136)
T ss_dssp EESC
T ss_pred EECC
Confidence 8643
No 50
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.67 E-value=1.1e-08 Score=120.03 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=54.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEe
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~ 164 (513)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999875
No 51
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.23 E-value=8.9e-07 Score=77.94 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=54.8
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC---CCCee---eccc-EEEEEe
Q 010300 92 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA---PGNIV---KVGE-TLLKLV 164 (513)
Q Consensus 92 ~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~---~g~~v---~~G~-~l~~i~ 164 (513)
+..|.+|+ +....+ .++||.|++||++|+||++|+..+|.||.+|+|.+++.. ..+.| +-|+ -|+.|.
T Consensus 30 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~ 104 (128)
T 1onl_A 30 YAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLK 104 (128)
T ss_dssp HHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEE
T ss_pred HHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEE
Confidence 44666666 444443 499999999999999999999999999999999999755 34445 5566 777777
Q ss_pred cC
Q 010300 165 VG 166 (513)
Q Consensus 165 ~~ 166 (513)
..
T Consensus 105 ~~ 106 (128)
T 1onl_A 105 PR 106 (128)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 52
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.23 E-value=5.2e-07 Score=79.71 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=53.4
Q ss_pred EecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCC---eee---ccc-EEEEE
Q 010300 92 VPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN---IVK---VGE-TLLKL 163 (513)
Q Consensus 92 ~~~p~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~---~v~---~G~-~l~~i 163 (513)
+.+|.+|+ |+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+.++ .|. -|+ -|+.|
T Consensus 30 ~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i 103 (131)
T 1hpc_A 30 HAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKI 103 (131)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred hhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEE
Confidence 44566655 444444 99999999999999999999999999999999999865543 453 344 67777
Q ss_pred ecC
Q 010300 164 VVG 166 (513)
Q Consensus 164 ~~~ 166 (513)
...
T Consensus 104 ~~~ 106 (131)
T 1hpc_A 104 KPT 106 (131)
T ss_dssp EES
T ss_pred EEC
Confidence 653
No 53
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.21 E-value=1.2e-06 Score=77.00 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=54.5
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCC---Ceee---ccc-EEEEE
Q 010300 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG---NIVK---VGE-TLLKL 163 (513)
Q Consensus 91 ~~~~p~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g---~~v~---~G~-~l~~i 163 (513)
++.+|.+|+ +....+ .++||.|++||+||+||++|+..+|.||.+|+|.+++...+ +.|. -|+ -|+.|
T Consensus 30 d~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i 104 (128)
T 3a7l_A 30 EHAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKI 104 (128)
T ss_dssp HHHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred hHHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEE
Confidence 345677766 444443 49999999999999999999999999999999999976544 3444 455 67777
Q ss_pred ecC
Q 010300 164 VVG 166 (513)
Q Consensus 164 ~~~ 166 (513)
...
T Consensus 105 ~~~ 107 (128)
T 3a7l_A 105 KAS 107 (128)
T ss_dssp EES
T ss_pred EEC
Confidence 654
No 54
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.80 E-value=2.8e-05 Score=81.54 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=58.2
Q ss_pred ceEEEEEEEc-CCCCeecCCCeEEEEEcCC------------------------------------------------cc
Q 010300 102 AECELLKWFV-KEGDEIEEFQPLCAVQSDK------------------------------------------------AT 132 (513)
Q Consensus 102 ~eg~i~~w~v-~~Gd~V~~gd~l~~vetdK------------------------------------------------~~ 132 (513)
..|.|.+++| ++||.|++||+|+++++.. ..
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 5899999998 9999999999999999521 24
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
..|.||++|+|.++.+.+|+.|..|++|+.|...
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 5799999999999999999999999999999753
No 55
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.78 E-value=9e-06 Score=80.20 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=57.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 130 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK--------------------------------------------------- 130 (513)
..|.|.+++|++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 47999999999999999999999998642
Q ss_pred --------------------cceeeecCCCeEEEEEeeCCCCeeecc--cEEEEEecCC
Q 010300 131 --------------------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVGD 167 (513)
Q Consensus 131 --------------------~~~~i~a~~~G~v~~i~~~~g~~v~~G--~~l~~i~~~~ 167 (513)
....|.||++|+|..+.+.+|+.|..| ++|+.|...+
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence 124699999999999999999999999 5899987643
No 56
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.76 E-value=2.9e-05 Score=79.42 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=58.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc--------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA-------------------------------------------------- 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~-------------------------------------------------- 131 (513)
..|.|.+++|++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999997642
Q ss_pred --------------------------ceeeecCCCeEEEEEeeCCCCeeec-ccEEEEEecC
Q 010300 132 --------------------------TIEITSRYKGKVAQLLHAPGNIVKV-GETLLKLVVG 166 (513)
Q Consensus 132 --------------------------~~~i~a~~~G~v~~i~~~~g~~v~~-G~~l~~i~~~ 166 (513)
...|.||++|+|..+.+.+|+.|.. |++|+.|...
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence 2469999999999999999999998 9999999764
No 57
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.71 E-value=3e-05 Score=78.68 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=56.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 130 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK--------------------------------------------------- 130 (513)
..|.|.+++|++||.|++||+|+++++..
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 57999999999999999999999998641
Q ss_pred ----------------------------------cceeeecCCCeEEEEEeeCCCCeeecccE---EEEEecC
Q 010300 131 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLVVG 166 (513)
Q Consensus 131 ----------------------------------~~~~i~a~~~G~v~~i~~~~g~~v~~G~~---l~~i~~~ 166 (513)
....|.||++|+|.++.+.+|+.|..|++ |+.|...
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 190 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence 11459999999999999999999999987 8887653
No 58
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.60 E-value=7.2e-05 Score=65.27 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=45.9
Q ss_pred EEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC
Q 010300 90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~ 149 (513)
..|-|-+.... .-|.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++...
T Consensus 19 ~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~ 78 (125)
T 3klr_A 19 GTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA 78 (125)
T ss_dssp EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred EEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhh
Confidence 33444444332 2466666655 79999999999999999999999999999999998644
No 59
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.47 E-value=0.00013 Score=64.82 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=45.1
Q ss_pred EEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeC
Q 010300 90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (513)
Q Consensus 90 ~~~~~p~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~ 149 (513)
..|-+-+.... .-|.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus 41 ~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 41 VTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred EEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 34444444332 2355655544 89999999999999999999999999999999998644
No 60
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.45 E-value=4.7e-05 Score=78.50 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=57.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 130 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK--------------------------------------------------- 130 (513)
..|.|.+++|++||.|++||+|++|++..
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999998542
Q ss_pred ------cceeeecCCCeEEEEEeeCCCCeeecc--cEEEEEecC
Q 010300 131 ------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG 166 (513)
Q Consensus 131 ------~~~~i~a~~~G~v~~i~~~~g~~v~~G--~~l~~i~~~ 166 (513)
....|.||++|+|.++.+.+|+.|..| ++|+.|...
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence 124699999999999999999999995 899998753
No 61
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.37 E-value=0.00014 Score=64.37 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=44.9
Q ss_pred eEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 89 IVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 89 ~~~~~~p~lg~~~~eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
...|=|-+.... .-|.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus 35 ~~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 35 PVRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CEEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred EEEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 344444444332 2355655544 899999999999999999999999999999999985
No 62
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.13 E-value=0.00053 Score=61.67 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=38.9
Q ss_pred eEEEEEEEc-CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEe
Q 010300 103 ECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (513)
Q Consensus 103 eg~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~ 147 (513)
-|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus 58 LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 58 LGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp HCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred cCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 345554433 799999999999999999999999999999999985
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.00 E-value=4.7e-05 Score=78.02 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=54.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK--------------------------------------------------- 130 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK--------------------------------------------------- 130 (513)
..|.|.+++|++||.|++||+|+++++..
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 47899999999999999999999998642
Q ss_pred ----------------------------------cceeeecCCCeEEEEEeeCCCCeeecccE---EEEEec
Q 010300 131 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLVV 165 (513)
Q Consensus 131 ----------------------------------~~~~i~a~~~G~v~~i~~~~g~~v~~G~~---l~~i~~ 165 (513)
....|.||++|+|.++.+.+|+.|..|++ |+.|..
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD 190 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence 11349999999999999999999999998 555543
No 64
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.001 Score=55.47 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 120 FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 120 gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
|..+|.+|.++....|.||.+|+|.++++++||.|..||+|+.++..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~ 51 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM 51 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence 56678889899899999999999999999999999999999999854
No 65
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.24 E-value=0.011 Score=59.92 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=51.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc----CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+=+.+..++.||.|++||+|++|.. .....+|.||.+|+|.-.. ..-.|..|+.|+.|...+
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~Ia~~~ 330 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVIGVVE 330 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEEECBC
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEeccC
Confidence 3377778999999999999999996 3567899999999997753 356788999999987543
No 66
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.16 E-value=0.013 Score=60.03 Aligned_cols=62 Identities=19% Similarity=0.109 Sum_probs=53.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc----CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.| +++..++.||.|++||+|++|+. .+...+|.||.+|+|... .....|..|+.|+.|....
T Consensus 275 ~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 275 TG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDY 340 (354)
T ss_dssp CE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEEC
T ss_pred CE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeec
Confidence 35 78888999999999999999997 578899999999999765 4677899999999997543
No 67
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=95.84 E-value=0.017 Score=59.51 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=50.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc------CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS------DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet------dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.+=|.+..++.||.|++||+|++|.. .....+|.||.+|+|.-. ...-.|..|+.|+.|..
T Consensus 297 ~~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 297 KAGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASASVHQGTELYKVMT 363 (368)
T ss_dssp SCEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSSEECTTCEEEEEEE
T ss_pred CCEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEee
Confidence 34466689999999999999999987 457789999999999665 44578899999988864
No 68
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=95.83 E-value=0.0099 Score=45.81 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=31.1
Q ss_pred eeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 134 ~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.|.||.+|+|.++++++|+.|..|++|+.++...
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 34 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMK 34 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCc
Confidence 3789999999999999999999999999998653
No 69
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.73 E-value=0.012 Score=46.10 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=32.3
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
...|.|+.+|+|.++++++|+.|..|++|+.++..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence 45789999999999999999999999999999864
No 70
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=95.68 E-value=0.014 Score=45.16 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=32.1
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..|.||.+|+|.++++++|+.|..||+|+.++...
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence 46899999999999999999999999999998643
No 71
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.31 E-value=0.017 Score=48.99 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=32.0
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.|.|+.+|+|.++++++|+.|+.|++|+.++..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999999999999999865
No 72
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.23 E-value=0.017 Score=52.40 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=53.1
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEcCCcceeeecCCCeEEEEE-------------------------------
Q 010300 102 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 146 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~a~~~G~v~~i------------------------------- 146 (513)
.+|+|+.+. ++.|.|-. |+.++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 589999986 78888877 8999988876 57899999999988
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 010300 147 ----LHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 147 ----~~~~g~~v~~G~~l~~i~~ 165 (513)
++++||.|..||+|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEECH
T ss_pred ccEEEEeCcCEECCCCEEEEECH
Confidence 8999999999999999974
No 73
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.10 E-value=0.016 Score=46.47 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.6
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
...|.||.+|+|.++++++|+.|..||+|+.++...
T Consensus 5 ~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 40 (84)
T 2kcc_A 5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK 40 (84)
T ss_dssp TTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred CceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence 347999999999999999999999999999998543
No 74
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=94.88 E-value=0.021 Score=51.43 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=52.5
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEcCCcceeeecCCCeEEEE--------------------------------
Q 010300 102 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQ-------------------------------- 145 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~a~~~G~v~~-------------------------------- 145 (513)
.+|+|+.+. ++.|.|-. |+.++...++ ..+.||.+|+|..
T Consensus 14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 589999985 88898877 8999988876 5899999999997
Q ss_pred ---EeeCCCCeeecccEEEEEec
Q 010300 146 ---LLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 146 ---i~~~~g~~v~~G~~l~~i~~ 165 (513)
+++++||.|..||+|+.++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEECH
T ss_pred ceEEEEcCCCEEcCCCEEEEECH
Confidence 48999999999999999974
No 75
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.63 E-value=0.026 Score=51.29 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=52.5
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEcCCcceeeecCCCeEEEEE-------------------------------
Q 010300 102 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 146 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~a~~~G~v~~i------------------------------- 146 (513)
.+|+|+.+ .++.|.|-. |+.++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 58999998 778888777 8999988774 57899999999988
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 010300 147 ----LHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 147 ----~~~~g~~v~~G~~l~~i~~ 165 (513)
++++||.|..|++|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECH
T ss_pred ccEEEEeCCCEEcCCCEEEEECH
Confidence 8899999999999999974
No 76
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=94.24 E-value=0.043 Score=45.38 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=33.6
Q ss_pred CcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 130 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 130 K~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.-...|.++.+|+|.++++++|+.|..||+|+.|+...
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence 33467899999999999999999999999999998643
No 77
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.97 E-value=0.048 Score=50.66 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=28.4
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEE
Q 010300 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 146 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i 146 (513)
.++|++|+.|++||.||+-. .|-+..+|+|...
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~ 54 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 54 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence 57899999999999999875 8889999988543
No 78
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=93.87 E-value=0.029 Score=46.01 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=31.8
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
...|.||.+|+|.++++++|+.|..||+|+.++...
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k 60 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMK 60 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEeccc
Confidence 456899999999999999999999999999998643
No 79
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=93.77 E-value=0.047 Score=53.23 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=40.1
Q ss_pred CCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 112 KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 112 ~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 444444445556777765 467899999999999999999999999999999753
No 80
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=93.54 E-value=0.17 Score=51.01 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=48.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc----CCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.+-+....++.||.|++||+|+++-. .+...+|.||.+|+|.-.. ..-.|..|+.|+.|..
T Consensus 264 ~~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 264 SPGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILAR 328 (332)
T ss_dssp SSEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEEE
T ss_pred CCeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEee
Confidence 34455677999999999999999964 5677899999999996653 4556778888887764
No 81
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=93.43 E-value=0.057 Score=42.49 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=31.9
Q ss_pred eeeecCCCeEEEEE-------eeCCCCeeecccEEEEEecCC
Q 010300 133 IEITSRYKGKVAQL-------LHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 133 ~~i~a~~~G~v~~i-------~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..|.||..|+|.++ ++++|+.|..||+|+.++...
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence 46899999999998 899999999999999998753
No 82
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=93.31 E-value=0.06 Score=54.51 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=46.5
Q ss_pred cCCCCeecCCCeEEEEEcC-CcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 111 VKEGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 111 v~~Gd~V~~gd~l~~vetd-K~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
++.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 4455555555667788875 6788999999999999999999999999999999864
No 83
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=92.70 E-value=0.11 Score=52.20 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=43.4
Q ss_pred EcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
.++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 34555555555556677765 467899999999999999999999999999999754
No 84
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=92.60 E-value=0.058 Score=42.15 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=28.9
Q ss_pred ecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 136 TSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 136 ~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
.++.+|+|.++++++|+.|..||+|+.++...
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k 42 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDK 42 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSS
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccc
Confidence 45789999999999999999999999998653
No 85
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=91.69 E-value=0.095 Score=41.13 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=28.0
Q ss_pred cCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 137 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 137 a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
++.+|+|.++++++||.|..||+|+.++...
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETDK 42 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence 4579999999999999999999999998653
No 86
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=91.59 E-value=0.35 Score=43.54 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=42.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCccee-eecCCCeEEEEEeeCCC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLLHAPG 151 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~-i~a~~~G~v~~i~~~~g 151 (513)
.||..+-..+.+||.|.+||.|+-|.|-|.++- +.||.+|+|.-+.--++
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 467777888999999999999999999998776 99999999977654333
No 87
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=91.57 E-value=0.15 Score=40.94 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=27.8
Q ss_pred cCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 137 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 137 a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+..+|+|.++++++||.|..||+|+.++...
T Consensus 16 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 46 (87)
T 3crk_C 16 TMTMGTVQRWEKKVGEKLSEGDLLAEIETDX 46 (87)
T ss_dssp TCCEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred CCCcEEEEEEEcCCCCEEcCCCEEEEEECCc
Confidence 3468999999999999999999999998754
No 88
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=91.36 E-value=0.17 Score=51.51 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=27.9
Q ss_pred EEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEE
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ 145 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~ 145 (513)
..++|++||.|++||.||+-. .|-+..+|+|..
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~ 93 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 93 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence 367899999999999999975 788888888754
No 89
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=90.80 E-value=0.27 Score=40.10 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 138 ~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..+|+|.++++++||.|..||+|+.++...
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K 45 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDK 45 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence 468999999999999999999999998654
No 90
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=90.61 E-value=0.15 Score=40.11 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.3
Q ss_pred eecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 135 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 135 i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+-++..|+|.++++++||.|..||+|+.++...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence 335789999999999999999999999998654
No 91
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.60 E-value=0.27 Score=40.52 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=26.7
Q ss_pred CCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 139 YKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 139 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..|+|.++++++||.|..||+|+.++...
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K 48 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETDK 48 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEccc
Confidence 58999999999999999999999998754
No 92
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=90.51 E-value=0.23 Score=38.90 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=26.3
Q ss_pred CeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 140 KGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 140 ~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+|+|.++++++|+.|..||+|+.++...
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~ 41 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDK 41 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence 9999999999999999999999998754
No 93
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=89.93 E-value=0.029 Score=45.01 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
++|.+|.-|+|.++++++|+.|..||+|+.++...
T Consensus 3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k 37 (85)
T 2k7v_A 3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDK 37 (85)
T ss_dssp SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCC
T ss_pred cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccc
Confidence 56778888999999999999999999999998653
No 94
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=89.83 E-value=0.18 Score=51.48 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=39.4
Q ss_pred cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 111 v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
++.|+.-..-..-+.|+.. -...|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 23 v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 23 LEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp ------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 3444433333445566654 456899999999999999999999999999999753
No 95
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=89.82 E-value=0.21 Score=51.80 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=44.3
Q ss_pred EcCCCCeecCCCeEEEEEcC-CcceeeecCCCeEEEEEee-CCCCeeecccEEEEEecC
Q 010300 110 FVKEGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG 166 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetd-K~~~~i~a~~~G~v~~i~~-~~g~~v~~G~~l~~i~~~ 166 (513)
.++.|+.-..=...+.|+.| .-...|.++.+|+|.++++ ++||.|+.||+|+.|+..
T Consensus 98 ~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 98 TVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred EEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence 34445544445566677653 4567899999999999998 999999999999999853
No 96
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=89.41 E-value=0.24 Score=41.65 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=27.1
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 138 ~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..+|+|.++++++||.|..||+|+.|+...
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K 48 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDK 48 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence 358999999999999999999999998753
No 97
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=89.06 E-value=0.26 Score=45.72 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=36.4
Q ss_pred cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEE--------------------------E--eeCCCCeeecccEEEE
Q 010300 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ--------------------------L--LHAPGNIVKVGETLLK 162 (513)
Q Consensus 111 v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~--------------------------i--~~~~g~~v~~G~~l~~ 162 (513)
|++|+.|+.||+|+ -...|-|..+|+|.= + +|++||.|..|++|+.
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D 158 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 158 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence 89999999999999 335567888888741 2 7888889999988753
No 98
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=88.13 E-value=0.56 Score=43.56 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=40.4
Q ss_pred EEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeee
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVK 155 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~ 155 (513)
..++|++||.|++||.||+. |..+..|-+..+|+|.=-.+.+|.++.
T Consensus 62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~ 108 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTIT 108 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEE
T ss_pred CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceE
Confidence 36789999999999999977 899999999999999777677776554
No 99
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=87.66 E-value=0.17 Score=51.20 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=44.6
Q ss_pred cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 111 v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 4555555555666778744 567899999999999999999999999999999864
No 100
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=87.66 E-value=0.38 Score=37.56 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
..|+|.++++++||.|..|++|++|+..
T Consensus 48 ~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 48 KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 4799999999999999999999999854
No 101
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=87.14 E-value=0.46 Score=41.27 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 138 ~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..+|+|.++++++||.|..||+|+.|+...
T Consensus 39 ~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K 68 (128)
T 1y8o_B 39 MTMGTVQRWEKKVGEKLSEGDLLAEIETDK 68 (128)
T ss_dssp CSEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred cccEEEEEEecCCCCEecCCCEEEEEEcCc
Confidence 468999999999999999999999998654
No 102
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=86.89 E-value=0.14 Score=40.25 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=28.0
Q ss_pred cCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 137 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 137 a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
+..+|+|.++++++||.|..||+|+.++....
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~ 44 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETDKV 44 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSSSC
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEccce
Confidence 34699999999999999999999999986543
No 103
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=85.63 E-value=13 Score=38.49 Aligned_cols=27 Identities=15% Similarity=0.056 Sum_probs=24.8
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHh
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLI 502 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~L 502 (513)
-+-+++||-++||+-...|+++|.+..
T Consensus 135 ~l~l~~HH~i~Dg~S~~~l~~~l~~~Y 161 (493)
T 4hvm_A 135 VLGVVAHQMLLDARSRYMVLGAVWQAY 161 (493)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecchhhccHHHHHHHHHHHHHHh
Confidence 478899999999999999999999876
No 104
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=85.08 E-value=0.73 Score=51.09 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=33.0
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
...|.||..|+|.++++++||.|+.||+|++++...
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 647 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK 647 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence 456999999999999999999999999999998654
No 105
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=84.74 E-value=1.4 Score=40.49 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=43.8
Q ss_pred ceEEEEEEEcCCCCeecC----CCeEEEEEcCCcceeeecCCCeEEEEE-------------------------------
Q 010300 102 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------------------- 146 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~a~~~G~v~~i------------------------------- 146 (513)
..|+++.+ -++-|.|=. ||-++..=++. .|-||++|+|..+
T Consensus 41 v~G~vi~L-~eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLIHIGiDTV~L~G~ 116 (183)
T 3our_B 41 LSGEIVNI-EDVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGE 116 (183)
T ss_dssp SCEEEEEG-GGSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred cceEEEEc-hhCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEEEEecccccccCCc
Confidence 36777755 355665522 77777666543 6778888888776
Q ss_pred ----eeCCCCeeecccEEEEEec
Q 010300 147 ----LHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 147 ----~~~~g~~v~~G~~l~~i~~ 165 (513)
+|++||.|+.||+|+.++-
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEECH
T ss_pred cceEEEeCcCEEcCCCEEEEECH
Confidence 7789999999999999974
No 106
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=80.66 E-value=1.4 Score=52.07 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=33.7
Q ss_pred cceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 131 ~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
....|.||..|+|.++++++||.|+.||+|++|+...
T Consensus 1166 ~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A 1166 DAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp TCEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred CCcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence 3456999999999999999999999999999999764
No 107
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=79.58 E-value=1.4 Score=51.65 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=33.0
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|.||..|+|.+++|++||.|+.||+|+.++...-
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~ 1113 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKM 1113 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSSC
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence 469999999999999999999999999999997643
No 108
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=78.30 E-value=1.1 Score=49.72 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=32.9
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
..|.||..|+|.++++++||.|..||+|+.++...-
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKm 685 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKM 685 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSC
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccc
Confidence 569999999999999999999999999999986543
No 109
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=78.19 E-value=2.1 Score=50.30 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=36.0
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCee
Q 010300 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIV 154 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v 154 (513)
.++|++||.|++||.||+. |--+..|-+..+|+|.=-.+.+|-++
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g~t~ 1046 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 1046 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBTTTE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccCcee
Confidence 5789999999999999988 67788899999998865444455433
No 110
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=76.65 E-value=0.99 Score=45.92 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred cCCCCeecCCCeEEEEEcCCcceeeecCCCeEEE
Q 010300 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA 144 (513)
Q Consensus 111 v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~ 144 (513)
+++|+.|+.||+|+ -...|-|..+|+|.
T Consensus 125 v~~g~~v~~G~vla------k~~aiiaeidG~V~ 152 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS------KNEEYICELDGKIV 152 (352)
T ss_dssp CCTTCEECTTCBSB------SSSSCBCCSCEEEE
T ss_pred cCCCCEEccCcEEe------cCceEEeccceEEE
Confidence 89999999999998 23456666666664
No 111
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=76.29 E-value=1.2 Score=39.80 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=36.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCcc---------eeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKAT---------IEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~---------~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
+|+=-+.+|++||+|++||+|+++.-++.. +-++- .+ ...+....+..|..|+.|..+
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NG--GKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CS--SCCCSCBCCEEECTTCEEEEE
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CC--cceEEEccCceEcCCCEEEEe
Confidence 455566899999999999999999744321 11222 11 112233345567788887765
No 112
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=75.50 E-value=43 Score=33.57 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=25.6
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
-+-+.+||-++||+-...|+++|.++.+
T Consensus 119 ~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~ 146 (436)
T 1l5a_A 119 LIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (436)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhheecHhHHHHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 113
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=73.49 E-value=0.69 Score=51.23 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=0.0
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..|.||..|+|.++++++||.|..||+|++|+...
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 637 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMK 637 (675)
T ss_dssp -----------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEecc
Confidence 46999999999999999999999999999998654
No 114
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=71.76 E-value=2.5 Score=49.65 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=28.5
Q ss_pred eeeecCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 010300 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 133 ~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 167 (513)
..|.||..|+|.++++++||.|+.||+|+.++...
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamK 1130 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMK 1130 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC--
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEccc
Confidence 56999999999999999999999999999998653
No 115
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=68.25 E-value=2.7 Score=38.62 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=23.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
+|+--+++|++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 3455689999999999999999997544
No 116
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=65.96 E-value=1.2 Score=42.41 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 010300 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 138 ~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
-.+|+|.+|++++||.|..||+|+.|+.+..
T Consensus 15 m~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~ 45 (229)
T 1zy8_K 15 MEEGNIVKWLKKEGEAVSAGDALCEIETDKA 45 (229)
T ss_dssp -------------------------------
T ss_pred CCcEEEEEEecCCCCEeCCCCEEEEEecCCc
Confidence 4689999999999999999999999986543
No 117
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=64.16 E-value=4 Score=41.25 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=40.2
Q ss_pred EEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 109 WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 109 w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
-.++.|+.|++||+|+++- | .++.+|++|.+.- .. .-.|..|+.++.+...
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVCE 329 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEEE
Confidence 3468999999999999994 4 6889999998744 23 5678899988877644
No 118
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=63.97 E-value=1.4 Score=45.94 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 102 AECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 102 ~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
.+|+|.++++++||.|..|++|++|+.+..
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp ------------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 689999999999999999999999986543
No 119
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=58.25 E-value=52 Score=34.92 Aligned_cols=171 Identities=9% Similarity=-0.010 Sum_probs=0.0
Q ss_pred echHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCc---------ccceEEccCCceEEEcc------cceEEeE
Q 010300 314 NCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYP---------FMNSCFNEESLEVILKG------SHNIGIA 378 (513)
Q Consensus 314 Dvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P---------~lN~~~~~d~~~i~~~~------~i~igiA 378 (513)
+...|++.+|+. -|.++|+++++.-|++.++.++. .+....--+..+.+..+ .+-+...
T Consensus 288 ~t~~L~~~ck~~------~~~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~l~~~~~~n~~~~~~~~~ 361 (519)
T 3fot_A 288 ESIDIVKAVKTR------LGPGFTISHLTQAAIVLALLDHLKPNDLSDDEVFISPTSVDGRRWLREDIASNFYAMCQTAA 361 (519)
T ss_dssp HHHHHHHHHHHH------TCTTCCHHHHHHHHHHHHHHHHC----CCTTCCEEEEEEEECGGGBCHHHHTSCCSCCEEEE
T ss_pred HHHHHHHHHHhc------CCCCeeHHHHHHHHHHHHHHhhcCCcccCCCccEEEEeeeeccccCCCcccccccceeeeee
Q ss_pred EecCCCeEeeeeecCCCCC-----HHHHHHHHHHHHHHhhcCCC-------------------CCCCCCCCeEEEEeCCC
Q 010300 379 MATQHGLAVPNIKNVQSLS-----ILEITKELSRLQQLAKDNEL-------------------NPADNSGGTITLSNIGA 434 (513)
Q Consensus 379 v~~~~Gl~~pvI~~a~~~s-----l~ei~~~~~~l~~~ar~~~l-------------------~~~d~~ggtftISnlg~ 434 (513)
.-.-+.....+.....+.. |.++++.+++.......+.+ .+......+..+||+|.
T Consensus 362 ~~~v~~i~~~~~~~~~~e~~~~~~~~~~ar~l~~~y~~~~~np~i~~l~~~~k~~~~~l~~~~~~~~~~~~tp~lSslG~ 441 (519)
T 3fot_A 362 VVRIENLKSITVSHKDEKELQVRALESACRNIKKSYRQWLENPFLQALGLRVHNFEASYLHAKPIPFEGEANPLFISDGI 441 (519)
T ss_dssp EEEECCGGGGCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHCSSCCCSBCCCEEEEEEE
T ss_pred eeEecCccccccccchhhhhhHhHHHHHHHHHHHHhhcccCCchHHHhHHHHHHHHHHHhcccCCCCCCccCcccccCCc
Q ss_pred CC--Ccccee---------------ccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHH
Q 010300 435 IG--GKFGAP---------------LLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNE 497 (513)
Q Consensus 435 ~G--~~~~tp---------------ii~~pq~ail~iG~i~~~p~~~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~ 497 (513)
+- +..-.. +.......-+.++-... +| .|.+++.||-...|...+-.||+.
T Consensus 442 vd~~lp~~y~~~~~~~~~~~V~~~~~~~~~~~~~~~~~~~Tf------~g------~L~l~~~yn~a~~~~e~v~~~l~~ 509 (519)
T 3fot_A 442 NERFIPHEIKQTATGENVLSVESIDFVVNQSLPYLAIRLDSW------RD------ASTLNIIYNDANYTEAEVQKYLQS 509 (519)
T ss_dssp GGGTSCSEEEETTTTEEEEEEEEEEEEECCCSSSCEEEEEEE------TT------EEEEEEEEETTTCCHHHHHHHHHH
T ss_pred cccccchhhccccCCCCceEEEEEEEEccccCCceEEEEEEE------CC------EEEEEEEeccccCCHHHHHHHHHH
Q ss_pred HHHHh
Q 010300 498 WKQLI 502 (513)
Q Consensus 498 lk~~L 502 (513)
+++.|
T Consensus 510 v~~~L 514 (519)
T 3fot_A 510 IVEFM 514 (519)
T ss_dssp HHHHH
T ss_pred HHHHH
No 120
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=55.97 E-value=6.5 Score=35.32 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcC
Q 010300 104 CELLKWFVKEGDEIEEFQPLCAVQSD 129 (513)
Q Consensus 104 g~i~~w~v~~Gd~V~~gd~l~~vetd 129 (513)
|+=-+.+|++||+|++||+|+++.-+
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 93 GEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHH
T ss_pred CCccEEEEeCcCEECCCCEEEEECHH
Confidence 33456689999999999999999744
No 121
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=54.65 E-value=8.4 Score=37.82 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-++|++++|+.|++||+|++++
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEE
Confidence 45789999999999999999997
No 122
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=53.53 E-value=10 Score=38.82 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=27.3
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-|+++++|.++||..+..|++.|.++...
T Consensus 152 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg 181 (421)
T 2bgh_A 152 TAIGVNLSHKIADVLSLATFLNAWTATCRG 181 (421)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeeEEechHHHHHHHHHHHHHHhcC
Confidence 668999999999999999999999998753
No 123
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=52.83 E-value=8.1 Score=38.00 Aligned_cols=21 Identities=5% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~ve 127 (513)
++|++++|+.|++||+|++++
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~ 97 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELK 97 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 589999999999999999997
No 124
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=52.82 E-value=8.1 Score=38.00 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|++++|+.|++||+|++++
T Consensus 73 ~v~~~~~dG~~v~~g~~v~~i~ 94 (286)
T 1x1o_A 73 AFTPLVAEGARVAEGTEVARVR 94 (286)
T ss_dssp EEEESSCTTCEECTTCEEEEEE
T ss_pred EEEEEcCCCCCccCCCEEEEEE
Confidence 3789999999999999999997
No 125
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=52.81 E-value=10 Score=39.19 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=27.4
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
+-|+++++|.++||..+..|++.|.++..
T Consensus 157 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 185 (453)
T 2xr7_A 157 ISIGFTNHHVAGDGATIVKFVRAWALLNK 185 (453)
T ss_dssp EEEEEEECTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeeeechhHHHHHHHHHHHHhh
Confidence 66899999999999999999999999887
No 126
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=52.58 E-value=11 Score=38.86 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=27.7
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 148 ~~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg 177 (451)
T 2rkv_A 148 LILTVNGQHGAMDMVGQDAVIRLLSKACRN 177 (451)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeeeeeehhccccHHHHHHHHHHHHHHhcC
Confidence 668999999999999999999999998764
No 127
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=52.39 E-value=12 Score=38.85 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=27.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
+-|+++++|.++||.-+..|++.|.++..
T Consensus 162 ~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r 190 (454)
T 2e1v_A 162 IAIGITNHHCLGDASTRFCFLKAWTSIAR 190 (454)
T ss_dssp EEEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeeeecchhHHHHHHHHHHHHhc
Confidence 67899999999999999999999999887
No 128
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=52.03 E-value=8.9 Score=37.93 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|++++|+.|++||+|++++
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEE
Confidence 4589999999999999999997
No 129
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=51.21 E-value=10 Score=36.87 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=18.5
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~ve 127 (513)
++|.+++|+.|.+||+|++|+
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~ 80 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIR 80 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 568899999999999999887
No 130
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.98 E-value=14 Score=38.33 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=34.1
Q ss_pred EEcCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCC
Q 010300 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+...+ ..+|.|+.+|+|..| +.+.||.|..|++|+.|....
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 34566 788999999999877 677899999999999998653
No 131
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=50.87 E-value=11 Score=38.36 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.3
Q ss_pred ceeeecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 132 ~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
..-+.||.+|.+. ..++.|+.|+.||+|+.|.+
T Consensus 290 ~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEEC
T ss_pred cEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEc
Confidence 3458999999995 68999999999999999986
No 132
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=50.60 E-value=7.6 Score=38.16 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|++++||.|++||+|++++
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~ 93 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIE 93 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEE
Confidence 4678899999999999999887
No 133
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=50.60 E-value=16 Score=38.13 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=35.4
Q ss_pred EEcCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCCC
Q 010300 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
+...+-..+|.|+.+|+|..| +.+.||.|..|++|+.|....+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 345667788999999999877 6778999999999999986543
No 134
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=50.39 E-value=6.2 Score=35.51 Aligned_cols=28 Identities=39% Similarity=0.419 Sum_probs=22.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 010300 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (513)
Q Consensus 103 eg~i~~w~v~~Gd~V~~gd~l~~vetdK 130 (513)
.|+=.+.+|++||+|++||+|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 4455667999999999999999997443
No 135
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=50.25 E-value=9.4 Score=37.75 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=18.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|.+++|+.|++||+|++|+
T Consensus 87 ~v~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 87 EVDWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EEEESSCTTCEECTTCEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3578899999999999888887
No 136
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=50.11 E-value=14 Score=38.10 Aligned_cols=30 Identities=23% Similarity=0.601 Sum_probs=27.4
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 475 MTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 475 m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-|.++++|.++||.-+..|++.|.+....
T Consensus 150 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~rg 179 (439)
T 4g22_A 150 VSLGVGMRHHAADGFSGLHFINSWSDMARG 179 (439)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeeeccCcHHHHHHHHHHHHHHhCC
Confidence 668999999999999999999999998753
No 137
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=49.09 E-value=15 Score=36.63 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=30.7
Q ss_pred CcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 130 KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 130 K~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
....-|.||.+|.+.. +++.||.|+.||+|+.|...
T Consensus 255 ~~~~~v~A~~~Gl~~~-~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 255 DGDCYLFSEHDGLFEI-MIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CSCCCEECSSCEEEEE-SSCTTCEECTTCEEEEEECS
T ss_pred CCcEEEeCCCCeEEEE-cCCCCCEEcCCCEEEEEEcC
Confidence 4456689999998854 79999999999999999864
No 138
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=49.07 E-value=10 Score=37.94 Aligned_cols=23 Identities=30% Similarity=0.764 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 010300 105 ELLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 105 ~i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
.-++|.+++|+.|.+||+|++|+
T Consensus 108 ~~v~~~~~dG~~v~~g~~l~~v~ 130 (320)
T 3paj_A 108 VSIEWHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp CEEEESSCTTCEECTTCEEEEEE
T ss_pred eEEEEEeCCCCEecCCCEEEEEE
Confidence 34678999999999999998887
No 139
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=48.10 E-value=11 Score=37.33 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.2
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
-++|.+++|+.|.+|++|++|+
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~ 107 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQ 107 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 4789999999999999999997
No 140
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=47.81 E-value=18 Score=32.47 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=35.1
Q ss_pred eecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 010300 116 EIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (513)
Q Consensus 116 ~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 169 (513)
.+++|+.||.++. +|+..-..+.+|+.|..|+.||.+.....+
T Consensus 95 ~lkkGt~L~lvpa-----------eG~~V~~i~~~G~rV~kgd~lA~i~T~KGE 137 (169)
T 3d4r_A 95 YLKAGTKLISVPA-----------EGYKVYPIMDFGFRVLKGYRLATLESKKGD 137 (169)
T ss_dssp EECTTCBCEEEEE-----------CSSEEEECCCCSEEECTTCEEEEEECTTCC
T ss_pred EEcCCCEEEEEEe-----------CceEEEEEcCcCcEeccCCeEEEEEecCce
Confidence 4677888888874 577777789999999999999999876543
No 141
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=45.51 E-value=20 Score=37.40 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=32.1
Q ss_pred cCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEe
Q 010300 128 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLV 164 (513)
Q Consensus 128 tdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~ 164 (513)
..+-..+|.|+.+|+|..| +.+.||.|..|++|+.|.
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 4556778899999999888 667999999999999999
No 142
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=42.57 E-value=12 Score=36.88 Aligned_cols=21 Identities=24% Similarity=0.680 Sum_probs=16.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 010300 107 LKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 107 ~~w~v~~Gd~V~~gd~l~~ve 127 (513)
++|.+++|+.|.+||+|++|+
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEE
Confidence 567788888888888887776
No 143
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=42.46 E-value=10 Score=34.64 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=9.6
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 010300 109 WFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 109 w~v~~Gd~V~~gd~l~~ve 127 (513)
+.|++||.|++||+|+.+.
T Consensus 85 i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 85 IQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CCCCTTCEECTTCEEEEEC
T ss_pred cccCCCCEEcCCCEEEeec
Confidence 3455555555555555544
No 144
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=41.59 E-value=31 Score=34.62 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=32.0
Q ss_pred EEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 010300 126 VQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 166 (513)
++..+...-+.|+.+|.+ +..++.|+.|+.||+|+.+...
T Consensus 261 ~~~~~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 261 MMVREADAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp EECCCGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEECT
T ss_pred eeecCCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEECC
Confidence 343455667899999966 6678999999999999999864
No 145
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=41.44 E-value=2.2e+02 Score=33.33 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.8
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
-+-+++||-++||+-...|+++|.++..
T Consensus 140 ~l~~~~HHii~DG~S~~~l~~el~~~Y~ 167 (1304)
T 2vsq_A 140 EWVWSYHHIILDGWCFGIVVQDLFKVYN 167 (1304)
T ss_dssp EEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCceeechhhHHHHHHHHHHHHH
Confidence 3678999999999999999999988764
No 146
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=41.12 E-value=13 Score=38.67 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
-+..+.=+.++++.||.|++||+|++|=.++.
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~~ 405 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQ 405 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEESSS
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEeCChH
Confidence 45666778999999999999999999874443
No 147
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=40.44 E-value=19 Score=37.61 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=34.8
Q ss_pred EEcCCcceeeecCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCC
Q 010300 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~ 167 (513)
+...+-..+|.|+.+|+|..| +.+.||.|..|++|+.|....
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 345667788999999999887 677899999999999998653
No 148
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=37.86 E-value=32 Score=36.13 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=34.7
Q ss_pred EEcCCcceeeecCCCeEEEE-----------------------------EeeCCCCeeecccEEEEEecCCC
Q 010300 126 VQSDKATIEITSRYKGKVAQ-----------------------------LLHAPGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 126 vetdK~~~~i~a~~~G~v~~-----------------------------i~~~~g~~v~~G~~l~~i~~~~~ 168 (513)
+-..+-..+|.|+.+|+|.. ++.+.||.|..|++|+.|....+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 44566778899999999954 46778999999999999986533
No 149
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.28 E-value=20 Score=37.24 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=26.6
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
-+..+.=+.++++.||+|++||+|++|=+++-
T Consensus 363 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 363 PIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 35556668899999999999999999987653
No 150
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=37.18 E-value=20 Score=37.37 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=26.6
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
-+..+.=+.++++.||+|++||+|++|=+++-
T Consensus 371 ~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 371 VIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 45556668899999999999999999987643
No 151
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=36.58 E-value=20 Score=31.18 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=28.0
Q ss_pred eeecCCCeEEEEEee-CCCCeeecccEEEEEecCCC
Q 010300 134 EITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 134 ~i~a~~~G~v~~i~~-~~g~~v~~G~~l~~i~~~~~ 168 (513)
++.+|.-|.|..+.+ ++|+.|..|++|+.|+....
T Consensus 38 ~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~ 73 (136)
T 1zko_A 38 NHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKA 73 (136)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred hhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 355666777777777 89999999999999986543
No 152
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=35.23 E-value=22 Score=37.47 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=25.6
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 101 ~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
+.-+.=+.++++.||+|++||+|++|=+++-
T Consensus 407 id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 407 LRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred cCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 4445668899999999999999999976643
No 153
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=34.77 E-value=38 Score=30.73 Aligned_cols=65 Identities=11% Similarity=-0.071 Sum_probs=41.7
Q ss_pred CceEEEecCCC--C---C---CCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeeccc
Q 010300 87 SGIVDVPLAQT--G---E---GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGE 158 (513)
Q Consensus 87 ~~~~~~~~p~l--g---~---~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~ 158 (513)
+.-++|..|.= | . ...+|+|+..- | -..+|+-+.-...+-+- +.++.|++||.|+.||
T Consensus 32 H~GiDi~~~~G~~g~~gtpV~A~~~G~V~~~~---------G-~~V~I~H~~g~~t~Y~H----L~~i~V~~G~~V~~Gq 97 (182)
T 3it5_A 32 YSSFDASYDWPRWGSATYSVVAAHAGTVRVLS---------R-CQVRVTHPSGWATNYYH----MDQIQVSNGQQVSADT 97 (182)
T ss_dssp CCEEEEESSCCCTTSCCCEEECSSSEEEEEEE---------T-TEEEEECTTSEEEEEES----EESCCCCTTCEECTTC
T ss_pred eecEEecCCCCCCCCCCCEEEeccCEEEEEEC---------C-eEEEEEECCcEEEEEEc----CCccccCCCCEEcCCC
Confidence 44588887731 1 1 34688888753 3 24455554433333222 3466799999999999
Q ss_pred EEEEEec
Q 010300 159 TLLKLVV 165 (513)
Q Consensus 159 ~l~~i~~ 165 (513)
+|+.+..
T Consensus 98 ~IG~vG~ 104 (182)
T 3it5_A 98 KLGVYAG 104 (182)
T ss_dssp EEEEECS
T ss_pred EEEeecC
Confidence 9999975
No 154
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=32.90 E-value=41 Score=28.92 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=27.6
Q ss_pred eecCCCeEEEEEee-CCCCeeecccEEEEEecCCC
Q 010300 135 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 135 i~a~~~G~v~~i~~-~~g~~v~~G~~l~~i~~~~~ 168 (513)
+..+.-|.|..+.+ ++|+.|..|++|+.|+....
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~ 64 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKA 64 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSC
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEecce
Confidence 44566787888877 89999999999999986543
No 155
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=32.69 E-value=20 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=12.6
Q ss_pred EeeCCCCeeecccEEEEEec
Q 010300 146 LLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 146 i~~~~g~~v~~G~~l~~i~~ 165 (513)
+.|++||.|..||+|+.+..
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp ECSCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 35666666666666666654
No 156
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=32.46 E-value=20 Score=34.33 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=11.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 010300 106 LLKWFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 106 i~~w~v~~Gd~V~~gd~l~~ve 127 (513)
+.++.|++||.|++||+|+.+.
T Consensus 132 L~~i~Vk~Gd~V~~Gq~IG~vG 153 (245)
T 3tuf_B 132 LSEVSVEQGDKVKQNQVIGKSG 153 (245)
T ss_dssp ESEESCCTTCEECTTCEEEECB
T ss_pred CCccccCCCCEECCCCEEEEeC
Confidence 3344555555555555555554
No 157
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=32.38 E-value=21 Score=35.12 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.1
Q ss_pred EeeCCCCeeecccEEEEEecC
Q 010300 146 LLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 146 i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.|++|+.|..||+|+.+...
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~T 259 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGST 259 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 467888888888888877654
No 158
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=29.75 E-value=23 Score=34.80 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=15.4
Q ss_pred EEEEcCCCCeecCC------CeEEEEE
Q 010300 107 LKWFVKEGDEIEEF------QPLCAVQ 127 (513)
Q Consensus 107 ~~w~v~~Gd~V~~g------d~l~~ve 127 (513)
++|.+++|+.|..| |+|++|+
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~ 95 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEE
Confidence 45777777777777 7777765
No 159
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=28.85 E-value=40 Score=33.50 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=25.4
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 476 TVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 476 ~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
-+-+++||-++||+-...|+++|.++..
T Consensus 117 ~l~l~~hH~i~Dg~S~~~l~~~l~~~Y~ 144 (422)
T 1q9j_A 117 ELTLYLHHCMADGHHGAVLVDELFSRYT 144 (422)
T ss_dssp EEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeceEEEchhhHHHHHHHHHHHHH
Confidence 3789999999999999999999998765
No 160
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=28.80 E-value=20 Score=37.33 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEcCCc
Q 010300 100 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 131 (513)
Q Consensus 100 ~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~ 131 (513)
-+..+.=+.++++.||+|++||+|++|=+++-
T Consensus 376 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 376 TIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 45666668899999999999999999987653
No 161
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=27.71 E-value=15 Score=31.53 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=25.8
Q ss_pred eecCCCeEEEEEee-CCCCeeecccEEEEEecCC
Q 010300 135 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGD 167 (513)
Q Consensus 135 i~a~~~G~v~~i~~-~~g~~v~~G~~l~~i~~~~ 167 (513)
+..+.-|.|..+.+ ++|+.|..|++|+.|+...
T Consensus 30 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 63 (128)
T 1onl_A 30 YAQDALGDVVYVELPEVGRVVEKGEAVAVVESVK 63 (128)
T ss_dssp HHHHHHCSEEEEECBCTTCEECTTCEEEEEEESS
T ss_pred HHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcc
Confidence 34455576777766 8999999999999998654
No 162
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=27.32 E-value=8 Score=30.87 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=13.1
Q ss_pred EcCCCCeecCCCeEE
Q 010300 110 FVKEGDEIEEFQPLC 124 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~ 124 (513)
.|++||.|++||.|.
T Consensus 68 ~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 68 NVFEGERVERGDVIS 82 (84)
T ss_dssp SSCTTEEECBSCSSB
T ss_pred EeCCCCEECCCCCcc
Confidence 599999999999875
No 163
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=27.23 E-value=28 Score=33.44 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=13.4
Q ss_pred eeCCCCeeecccEEEEEecC
Q 010300 147 LHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 147 ~~~~g~~v~~G~~l~~i~~~ 166 (513)
.|++||.|..||+|+.+...
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGDS 202 (252)
T ss_dssp SCCTTCEECTTCEEEECBCC
T ss_pred cCCCCCEECCCCEEEEECCC
Confidence 56677777777777776543
No 164
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=25.57 E-value=57 Score=31.14 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=43.0
Q ss_pred eEEEecCCCCC-----CCceEEEEEEEcCCCCeecCCCeEEEEEcCCcceeeecCCCeEEEEEeeCCCCeeecccEEEEE
Q 010300 89 IVDVPLAQTGE-----GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (513)
Q Consensus 89 ~~~~~~p~lg~-----~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~a~~~G~v~~i~~~~g~~v~~G~~l~~i 163 (513)
-++|..|. |. .+..|+|+.+....| -| -++.|+-......+- +-+.++.|+.|+.|..|++|+.+
T Consensus 83 GIDi~a~~-Gt~~pV~A~~~G~V~~~g~~~~----~G-~~ViI~Hg~G~~t~Y----~HL~~i~Vk~Gd~V~~Gq~IG~v 152 (245)
T 3tuf_B 83 GIDLAEKD-GKDFDVSASLSGTVVKAEKDPV----LG-YVVEVEHADGLSTVY----QSLSEVSVEQGDKVKQNQVIGKS 152 (245)
T ss_dssp SEEEEETT-CCCCEEECSSCEEEEEEEEETT----TE-EEEEEECSTTEEEEE----EEESEESCCTTCEECTTCEEEEC
T ss_pred cEEEeCCC-CCcceEEeCcCeEEEEEEecCC----Cc-eEEEEEeCCCEEEEE----ecCCccccCCCCEECCCCEEEEe
Confidence 37777654 22 356888887754432 12 244555443332232 23447789999999999999999
Q ss_pred ecC
Q 010300 164 VVG 166 (513)
Q Consensus 164 ~~~ 166 (513)
...
T Consensus 153 G~t 155 (245)
T 3tuf_B 153 GKN 155 (245)
T ss_dssp BCC
T ss_pred CCc
Confidence 754
No 165
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=24.50 E-value=54 Score=29.37 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=26.2
Q ss_pred cccCHHHHHHHHHhCCCCCCccCCCCCCceeHHHHHHH
Q 010300 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (513)
Q Consensus 202 ~~asPaaR~lA~e~gidl~~v~GTG~~GrItk~DV~~~ 239 (513)
-.+.|.+++.++++|||++.-.. -.|+.+|+..|
T Consensus 66 ~~~d~~a~~~l~~~Gid~s~h~a----r~l~~~d~~~~ 99 (173)
T 4etm_A 66 NPPHEGTQEILRREGISFDGMLA----RQVSEQDLDDF 99 (173)
T ss_dssp CCCCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCCCHHHHHHHHHCCccccCCcc----ccCCHhhcCCC
Confidence 34679999999999999975332 25888998765
No 166
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=23.98 E-value=5.1e+02 Score=25.28 Aligned_cols=142 Identities=12% Similarity=0.094 Sum_probs=76.6
Q ss_pred ccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEecCC--------Ce---Eeee-eecCCCCCHHHHH
Q 010300 335 KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH--------GL---AVPN-IKNVQSLSILEIT 402 (513)
Q Consensus 335 klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~~~--------Gl---~~pv-I~~a~~~sl~ei~ 402 (513)
++|++.+++-|.+.+|.++-. + .+-+|+.+..-+ |. .+|+ +......++.++.
T Consensus 231 ~~t~~~~l~aa~~~~L~~~~g-~--------------dv~ig~~~~~R~~~~~~~~vG~f~n~lplr~~~~~~~t~~~~l 295 (436)
T 1l5a_A 231 QIGWPDALVALCALYLESAEP-D--------------APWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYL 295 (436)
T ss_dssp TCCHHHHHHHHHHHHHHHHST-T--------------CCEEEEEECCCTTSGGGGSCSCCCEEEEEECCCCTTCBHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhC-C--------------ceEEeeecccCCChHHhcCcceEEEEEEEEEecCCCCCHHHHH
Confidence 789999999999999987632 2 233455544211 32 2343 3445677999999
Q ss_pred HHHHHHHHHhhcCC-C---------CCC----CCCCCeEEEEeCCCC--CCccceeccCCCceeEEEecceEEee--EE-
Q 010300 403 KELSRLQQLAKDNE-L---------NPA----DNSGGTITLSNIGAI--GGKFGAPLLNLPEVAIIAMGRIEKVP--RL- 463 (513)
Q Consensus 403 ~~~~~l~~~ar~~~-l---------~~~----d~~ggtftISnlg~~--G~~~~tpii~~pq~ail~iG~i~~~p--~~- 463 (513)
+.+++....+.... + ... .+-.-.|.+.+...- +...... ..+.-+...+.. +.
T Consensus 296 ~~v~~~~~~~~~h~~~~~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~l~v~~ 368 (436)
T 1l5a_A 296 KQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTEL-------KVLASGSAEGINFTFRG 368 (436)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEE-------EEEEECCCCSEEEEEEE
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHhcccccCCCccceEEEeeccCccccCCCeeEE-------EecCCCCccceEEEEEe
Confidence 99887655544332 1 111 111123444333211 1000000 001111111000 11
Q ss_pred cCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 464 SDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 464 ~~~G~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
..+| .+.+.+.||-.+.+...+.++++.|..+|+.
T Consensus 369 ~~~~------~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~ 403 (436)
T 1l5a_A 369 SPQH------ELCLDITADLASYPQSHWQSHCERFPRFFEQ 403 (436)
T ss_dssp CTTS------CEEEEEEEETTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCC------cEEEEEEeChhhCCHHHHHHHHHHHHHHHHH
Confidence 1122 4778999999999999999988888777653
No 167
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=23.73 E-value=22 Score=41.91 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=16.5
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 010300 109 WFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 109 w~v~~Gd~V~~gd~l~~ve 127 (513)
+.|++||+|+.||+|+.+=
T Consensus 1107 ~~v~~g~~v~~g~vlakip 1125 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARIP 1125 (1407)
T ss_dssp CCCCSSCEECTTCEEECCC
T ss_pred EEecCCCEeccCceEEecc
Confidence 4689999999999999764
No 168
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=23.58 E-value=5.1e+02 Score=25.08 Aligned_cols=66 Identities=5% Similarity=-0.020 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEec----------CC-----CeEeeeeecCCCCCHH
Q 010300 335 KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMAT----------QH-----GLAVPNIKNVQSLSIL 399 (513)
Q Consensus 335 klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~----------~~-----Gl~~pvI~~a~~~sl~ 399 (513)
++|++.+++-|.+.+|.++ ...++ +.+-+|+.++. ++ |.++-.+......++.
T Consensus 234 ~~t~~~~l~aa~~~~l~r~-----~~~~~-------~~v~~g~~~~~R~~~~~~~~~~~~~~~vG~f~n~lp~~~~~~~~ 301 (422)
T 1q9j_A 234 RLSLNAVVAAAILLTEWQL-----RNTPH-------VPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIV 301 (422)
T ss_dssp TCCHHHHHHHHHHHHHHHH-----HTCSS-------CCEEEEEEEETTTTSSSCCCTTTBSCCEEEEEEEECCCSSCCHH
T ss_pred CCCHHHHHHHHHHHHHHhc-----ccCCC-------ceEEEeeeeecccccCCCCChhhhhhhheeeeeeeeccCCCCHH
Confidence 7899999999999999975 01111 23445555542 11 3333344444567899
Q ss_pred HHHHHHHHHHHHh
Q 010300 400 EITKELSRLQQLA 412 (513)
Q Consensus 400 ei~~~~~~l~~~a 412 (513)
++.+++++....+
T Consensus 302 ~~l~~v~~~~~~~ 314 (422)
T 1q9j_A 302 DLASDIVATLRAD 314 (422)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888887655444
No 169
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.16 E-value=5.3e+02 Score=30.12 Aligned_cols=149 Identities=16% Similarity=0.190 Sum_probs=77.1
Q ss_pred ccchHHHHHHHHHHHHhcCcccceEEccCCceEEEcccceEEeEEec-CC---------CeE---eee-eecCCCCCHHH
Q 010300 335 KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMAT-QH---------GLA---VPN-IKNVQSLSILE 400 (513)
Q Consensus 335 klS~~~~likAva~Al~~~P~lN~~~~~d~~~i~~~~~i~igiAv~~-~~---------Gl~---~pv-I~~a~~~sl~e 400 (513)
++|++.+++-|.+..|.++ .+. +++-+|+.++. +. |.+ .|+ +......++.+
T Consensus 251 ~~T~~~vllaa~a~~L~r~-------tg~-------~dvv~G~pvsgR~~~~~~~~~~vG~fvntlplr~~~~~~~s~~~ 316 (1304)
T 2vsq_A 251 HTTLSTALQAVWSVLISRY-------QQS-------GDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNG 316 (1304)
T ss_dssp TCCHHHHHHHHHHHHHHHH-------HTC-------SEEEEEEEECCCCTTSTTGGGCCSSCCEEEEEEEECCTTCBHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-------cCC-------CCEEEEEEeCCCCccchhhhcccccceeEEEEEecCCCCCcHHH
Confidence 7899999999999999875 222 23446666652 11 322 233 44466789999
Q ss_pred HHHHHHHHHHHhhcCC-C---------CCCCCCCCeEEEEeCCCCCCccceeccCCCceeEEEecceEE---eeEEcCCC
Q 010300 401 ITKELSRLQQLAKDNE-L---------NPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEK---VPRLSDDG 467 (513)
Q Consensus 401 i~~~~~~l~~~ar~~~-l---------~~~d~~ggtftISnlg~~G~~~~tpii~~pq~ail~iG~i~~---~p~~~~~G 467 (513)
+.+++++....+.... + ....+-...|.+.|.+.-+..............-+.+....+ ...+..++
T Consensus 317 ll~~v~~~~~~a~~hq~~p~~~i~~~l~~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dL~l~~~~~~ 396 (1304)
T 2vsq_A 317 LLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGD 396 (1304)
T ss_dssp HHHHHHHHHHHHGGGTTSCHHHHHHSSSCSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEEEEECCCCCSSEEEEEECSS
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHhCCCcccceeEEEeecccccccccccccCCceeEeeecccccccCeEEEEecCC
Confidence 9999987665554432 1 111111223444443211000000000000000011100000 00111122
Q ss_pred ceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 010300 468 NVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 503 (513)
Q Consensus 468 ~i~~r~~m~vslt~DHRviDG~~aa~Fl~~lk~~Le 503 (513)
-+.+.+.||..+.|-..+.++++.|..+|+
T Consensus 397 ------~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~ 426 (1304)
T 2vsq_A 397 ------EMLIKLAYNENVFDEAFILRLKSQLLTAIQ 426 (1304)
T ss_dssp ------SCEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred ------cEEEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 366889999999999999888888776664
No 170
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=23.12 E-value=37 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=15.8
Q ss_pred EeeCCCCeeecccEEEEEecC
Q 010300 146 LLHAPGNIVKVGETLLKLVVG 166 (513)
Q Consensus 146 i~~~~g~~v~~G~~l~~i~~~ 166 (513)
+.|++|+.|..||+|+.+...
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 467788888888888877644
No 171
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=22.04 E-value=25 Score=35.16 Aligned_cols=21 Identities=5% Similarity=-0.034 Sum_probs=16.5
Q ss_pred EEEcCCCCeecCCCeEEEEEc
Q 010300 108 KWFVKEGDEIEEFQPLCAVQS 128 (513)
Q Consensus 108 ~w~v~~Gd~V~~gd~l~~vet 128 (513)
++.|++||.|++||+|+.+-+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 446888888888888887763
No 172
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=21.94 E-value=88 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=26.4
Q ss_pred eecCCCeEEEEEee-CCCCeeecccEEEEEecCCC
Q 010300 135 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVGDS 168 (513)
Q Consensus 135 i~a~~~G~v~~i~~-~~g~~v~~G~~l~~i~~~~~ 168 (513)
+..+.-|.|..+.+ ++|+.|..|++|+.|+....
T Consensus 31 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~ 65 (128)
T 3a7l_A 31 HAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKA 65 (128)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred HHhccCCceEEEEecCCCCEEeCCCEEEEEEecce
Confidence 34455677777766 88999999999999986543
No 173
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=21.14 E-value=1.8e+02 Score=20.48 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=32.9
Q ss_pred cccEEEEeeeeechHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcCcccc
Q 010300 303 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMN 357 (513)
Q Consensus 303 ~iP~~~~~~eiDvt~l~~~rk~~~~~~~~~g~klS~~~~likAva~Al~~~P~lN 357 (513)
....|++-.+=++-.-++...+. .+.|++.++.+++..++..-..++
T Consensus 6 ~~~~~~lRlp~eL~~~l~~~A~~--------~grS~N~~i~~~L~~~l~~~~r~~ 52 (53)
T 1baz_A 6 KMPQVNLRWPREVLDLVRKVAEE--------NGRSVNSEIYQRVMESFKKEGRIG 52 (53)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCeeEEECCHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhhccccC
Confidence 45667777665555555554443 278999999999999998765554
No 174
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=21.06 E-value=22 Score=35.65 Aligned_cols=37 Identities=8% Similarity=-0.148 Sum_probs=25.4
Q ss_pred EcCCCCeecCCCeEEEEEcC-----CcceeeecCCCeEEEEE
Q 010300 110 FVKEGDEIEEFQPLCAVQSD-----KATIEITSRYKGKVAQL 146 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetd-----K~~~~i~a~~~G~v~~i 146 (513)
.++.|+.|++||+|+++-.. ....+|.+|.+|+|.-.
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g~ 319 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPGL 319 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCSSS
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceeee
Confidence 45899999999999987543 23456899999987443
No 175
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=20.82 E-value=1.4e+02 Score=32.25 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=38.9
Q ss_pred EcCCCCeecCCCeEEEEEcCC-cceee--ecCCCeEEEEEeeCCCCeeecccEEEEEec
Q 010300 110 FVKEGDEIEEFQPLCAVQSDK-ATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (513)
Q Consensus 110 ~v~~Gd~V~~gd~l~~vetdK-~~~~i--~a~~~G~v~~i~~~~g~~v~~G~~l~~i~~ 165 (513)
.+++||.|..||.+++|.-.. ....| +....|+|..| .+| ...+-++++.++.
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g-~~~v~~~v~~i~~ 185 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG-SFTIDDPICVIET 185 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE-EECTTSCCEEEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC-cceeceeEEEEec
Confidence 379999999999999987443 23443 44578999887 555 4577788888864
No 176
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=20.22 E-value=77 Score=32.69 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=0.0
Q ss_pred EEEEecccccChHHHHHHHHHHHHHhhC
Q 010300 477 VNIGADHRVLDGATVAKFCNEWKQLIEN 504 (513)
Q Consensus 477 vslt~DHRviDG~~aa~Fl~~lk~~Le~ 504 (513)
+-+++||-++||+-...|+++|.++...
T Consensus 216 l~~~~HH~i~Dg~S~~~l~~el~~~Y~~ 243 (520)
T 2jgp_A 216 LFTDMHHSISDGVSSGILLAEWVQLYQG 243 (520)
T ss_dssp EEEEEBGGGCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEccceeecHhHHHHHHHHHHHHHcc
No 177
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=20.01 E-value=51 Score=30.10 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.8
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 010300 109 WFVKEGDEIEEFQPLCAVQ 127 (513)
Q Consensus 109 w~v~~Gd~V~~gd~l~~ve 127 (513)
+.|++||+|+.||+|+.+-
T Consensus 168 i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 168 VQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp ESSCTTCEECTTCEEEEEE
T ss_pred EEEcCCCEEcCCCEEEEcc
Confidence 4588999999999998874
Done!