BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010301
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 258 bits (659), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 254/476 (53%), Gaps = 34/476 (7%)
Query: 2 ASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVP 56
A +GGG FM++RS T A D RE AP A++DM+ +D ++ T L+ G P
Sbjct: 66 AGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTP 124
Query: 57 GEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQV 115
G +AG A K+G + + QPA KLA++GF+V L + +EV+ N + +
Sbjct: 125 GTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAI 184
Query: 116 FAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLR 175
F G+ LK GD LA+SLE +AE GP+ Y GT+ E++ +++++ GG++T EDL
Sbjct: 185 FWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLA 244
Query: 176 SYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLG 228
+YK +S + GY + MPPPSSG + + ILNI ++ +GS+D+
Sbjct: 245 AYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA------ 298
Query: 229 LHRLIEALKHMFAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP-PDYYM 286
+ + EA K+ +A R LGDP FV + + +YA+ I +I N P +
Sbjct: 299 MQIMAEAEKYAYADRSEYLGDPDFVK--VPWQALTNKAYAKSIADQIDINKAKPSSEIRP 356
Query: 287 YRWSQLRDHGTSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTE 345
+ + + +H+ +VD + NAV++T T+N FG GI++ +GI+LNN+MDDFS P
Sbjct: 357 GKLAPYESNQATHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGV 416
Query: 346 ISPDKLPPAPANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFI 405
+ L AN + PNKRPLSSM+P I+ KD + V G GG II V Q+ +N
Sbjct: 417 PNVYGLVGGDANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSID 476
Query: 406 LGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 461
G+ A PR +H+ +P+ + E S ++ LE +G ++ K
Sbjct: 477 YGLNVAEATNAPRFHHQWLPDELRVEKG---------FSPDTLKLLEAKGQKVALK 523
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 159/294 (54%), Gaps = 23/294 (7%)
Query: 2 ASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVP 56
A +GGG FM++RS T A D RE AP A++DM+ +D ++ T L+ G P
Sbjct: 66 AGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTP 124
Query: 57 GEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQV 115
G +AG A K+G + + QPA KLA++GF+V L + +EV+ N + +
Sbjct: 125 GTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAI 184
Query: 116 FAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLR 175
F G+ LK GD LA+SLE +AE GP+ Y GT+ E++ +++++ GG++T EDL
Sbjct: 185 FWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLA 244
Query: 176 SYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLG 228
+YK +S + GY + MPPPSSG + + ILNI ++ +GS+D+
Sbjct: 245 AYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA------ 298
Query: 229 LHRLIEALKHMFAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP 281
+ + EA K+ +A R LGDP FV + + +YA+ I +I N P
Sbjct: 299 MQIMAEAEKYAYADRSEYLGDPDFVK--VPWQALTNKAYAKSIADQIDINKAKP 350
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 166/323 (51%), Gaps = 21/323 (6%)
Query: 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYENDT------EAKYTGALSIG 54
M SGIGGG FM++ T T D RE AP A+ DM+ ++ + T ++G
Sbjct: 69 MMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVG 128
Query: 55 VPGEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQ 114
VPG + GL EA K G + + L P+IKLA++GF + L + I++ E L+ +
Sbjct: 129 VPGTLKGLEEALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKD 187
Query: 115 VFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDL 174
VF PNG+ LK GD +LA++ + + +G +A Y G + L V++ GG +T +DL
Sbjct: 188 VFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDL 247
Query: 175 RSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIE 234
+Y + + + + + GY I+ PPPSSG + + +L I D + S + ++L+
Sbjct: 248 ENYDITIDEPIWGDYQGYQIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLA 307
Query: 235 ALKHM-FAVRMTL-GDPKFVNNTNTLSEMLSPSY-AEQIQLKIFDNTTFPP---DYYMYR 288
H+ +A R + GDP+FVN L +L P Y E+ QL D P D + Y+
Sbjct: 308 ETMHLSYADRASYAGDPEFVN--VPLKGLLHPDYIKERQQLINLDQVNKKPKAGDPWKYQ 365
Query: 289 WSQLRDHGTSHFCIVDAERNAVS 311
G++++ V+ ++ V
Sbjct: 366 ------EGSANYKQVEQPKDKVE 382
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 165/322 (51%), Gaps = 21/322 (6%)
Query: 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYENDT------EAKYTGALSIG 54
M SGIGGG FM++ T T D RE AP A+ DM+ ++ + T ++G
Sbjct: 61 MMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVG 120
Query: 55 VPGEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQ 114
VPG + GL EA K G + + L P+IKLA++GF + L + I++ E L+ +
Sbjct: 121 VPGTLKGLEEALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKD 179
Query: 115 VFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDL 174
VF PNG+ LK GD +LA++ + + +G +A Y G + L V++ GG +T +DL
Sbjct: 180 VFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDL 239
Query: 175 RSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIE 234
+Y + + + + + GY I+ PPPSSG + + + I D + S + ++L+
Sbjct: 240 ENYDITIDEPIWGDYQGYQIATTPPPSSGGIFLLQMPKILDHFNLSQYDVRSWEKYQLLA 299
Query: 235 ALKHM-FAVRMTL-GDPKFVNNTNTLSEMLSPSY-AEQIQLKIFDNTTFPP---DYYMYR 288
H+ +A R + GDP+FVN L +L P Y E+ QL D P D + Y+
Sbjct: 300 ETMHLSYADRASYAGDPEFVN--VPLKGLLHPDYIKERQQLINLDQVNKKPKAGDPWKYQ 357
Query: 289 WSQLRDHGTSHFCIVDAERNAV 310
G++++ V+ ++ V
Sbjct: 358 ------EGSANYKQVEQPKDKV 373
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 142/274 (51%), Gaps = 10/274 (3%)
Query: 16 SATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHG 70
S T A D RE AP A++D + +D ++ T L+ G PG +AG A K+G
Sbjct: 79 SKNGNTTAIDFREXAPAKATRDXFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 71 RLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQVFAPNGKLLKSGDKC 129
+ QPA KLA++GF+V L + +EV+ N + +F G+ LK GD
Sbjct: 139 TXPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 130 YNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANA 189
LA+SLE +AE GP+ Y GT+ E++ ++ ++ GG++T EDL +YK +S +
Sbjct: 199 VQANLAKSLEXIAENGPDEFYKGTIAEQIAQEXQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 190 MGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRL-IEALKHMFAVRMT-LG 247
GY + PPPSSG + + ILNI +++ G+ ++ EA K+ +A R LG
Sbjct: 259 RGYQVYSXPPPSSGGIHIVQILNILENFDXKKYGFGSADAXQIXAEAEKYAYADRSEYLG 318
Query: 248 DPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP 281
DP FV + + +YA+ I +I N P
Sbjct: 319 DPDFVK--VPWQALTNKAYAKSIADQIDINKAKP 350
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 135/532 (25%), Positives = 223/532 (41%), Gaps = 79/532 (14%)
Query: 2 ASGIGGGAFMVLRSSATSQTLAFDMRETAP-----QAASQDMYENDTEAKYTGALSIGVP 56
++GIG AF ++ + L R AP +A YE E G + + VP
Sbjct: 65 SNGIGSDAFALVWTKGKLHGLNGSGR--APMSLTMEAVKAKGYEQ--ELPPYGVIPVTVP 120
Query: 57 GEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILND------R 110
G E +G L A PAI+ A+EG+ V P L ++ + + + +
Sbjct: 121 GAPGAWAELAKMYGNLPLAASLAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTEWTDDVYQ 180
Query: 111 GLRQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILT 170
FAP G+ + G+ + A +L ++AE E+ Y G + +++ + GG LT
Sbjct: 181 PWFDTFAPKGRAPRVGEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLT 240
Query: 171 IEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSM--ILNIFDSYGSSDSAKGNLG 228
EDL Y+ + ++ +S + GY + +PP G V + I+ F+ Y D+
Sbjct: 241 KEDLACYRPEWVEPISIDYRGYRVWEIPPNGQGLVALEALNIVKGFEFY-HKDTVD---T 296
Query: 229 LHRLIEALKHMFAVRMTLGDPKFVNNTNTLS----EMLSPSYAEQIQLKIFDNTTFPPDY 284
H+ IEA+K F M K+V + +S ++LS YA + + +I + P
Sbjct: 297 YHKQIEAMKLAFVDGM-----KYVTEPSDMSVSVEQLLSDEYATERRKEIGEQALTPEPG 351
Query: 285 YMYRWSQLRDHGTSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPT 344
R GT + D + N VS + FG+G++ P TGI + N +FS
Sbjct: 352 TPPR------GGTVYLATADGDGNMVSFIQSNYMGFGSGVVVPGTGIAMQNRGHNFS--- 402
Query: 345 EISPDKLPPAPANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHF 404
L P N ++P KR ++ P +TK++Q G G GG QV +N
Sbjct: 403 ------LDPNHDNALKPGKRTYHTIIPGFLTKNDQPIGPFGVMGGFMQPQGHMQVMMNTI 456
Query: 405 ILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKL----FLEKRGHQLKA 460
G+ P AA+ PR W +G +++ + L +RGH+
Sbjct: 457 DFGLNPQAALDAPR--------------WQWTNGKQVQVEPTFPVDIAQALVRRGHK--- 499
Query: 461 KAGGAIVQFVVQTLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKDGRPAA 512
+Q V+ + R + I + G+L ++PR DG+ AA
Sbjct: 500 ------IQVVLD--EGAFGRGQIIWR-----DPTTGVLAGGTEPRTDGQVAA 538
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 148/296 (50%), Gaps = 29/296 (9%)
Query: 2 ASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYENDT-----EAKYTGALSIGVP 56
A IGGG F V+ A + +A D RE AP A+++M+ + + G L+ GVP
Sbjct: 76 AGNIGGGGFAVIHL-ANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVP 134
Query: 57 GEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVF 116
G +AG+ K+G L PAIKLA+ G+ ++ + + E L ++ F
Sbjct: 135 GTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYF 194
Query: 117 APNGKL-LKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLR 175
G L + GD +LA++L + G + Y G V E + KD+++ GGI+T EDL
Sbjct: 195 FKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLA 254
Query: 176 SYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLG 228
SY V + + GY I M PPSSG + ILN+ ++ YG+S +
Sbjct: 255 SYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKN------ 308
Query: 229 LHRLIEALKHMFAVR-MTLGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPD 283
+H EA++ +A R + +GD FV + + ++++ +YA+ KIFD T PD
Sbjct: 309 IHIAAEAMRQAYADRSVYMGDADFV--SVPVDKLINKAYAK----KIFD--TIQPD 356
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 148/296 (50%), Gaps = 29/296 (9%)
Query: 2 ASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYENDT-----EAKYTGALSIGVP 56
A IGGG F V+ A + +A D RE AP A+++M+ + + G L+ GVP
Sbjct: 77 AGNIGGGGFAVIHL-ANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVP 135
Query: 57 GEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVF 116
G +AG+ K+G L PAIKLA+ G+ ++ + + E L ++ F
Sbjct: 136 GTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYF 195
Query: 117 APNGKL-LKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLR 175
G L + GD +LA++L + G + Y G V E + KD+++ GGI+T EDL
Sbjct: 196 FKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLA 255
Query: 176 SYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLG 228
SY V + + GY I M PPSSG + ILN+ ++ YG+S +
Sbjct: 256 SYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKN------ 309
Query: 229 LHRLIEALKHMFAVR-MTLGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPD 283
+H EA++ +A R + +GD FV + + ++++ +YA+ KIFD T PD
Sbjct: 310 IHIAAEAMRQAYADRSVYMGDADFV--SVPVDKLINKAYAK----KIFD--TIQPD 357
>pdb|2V36|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 193
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 356
T+HF + D N VS TTT+ FG GI+ P G++LNNE+ DF D +P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDF--------DAIPGG-A 51
Query: 357 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 416
N ++PNKRPLSSMTP I+ KD++ +G GG II +V Q + H GME AAV+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 417 PRVY 420
PR+Y
Sbjct: 112 PRIY 115
>pdb|3A75|B Chain B, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|D Chain D, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 185
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 356
T+HF + D N VS TTT+ FG GI+ P G++LNNE+ DF D +P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDF--------DAIPGG-A 51
Query: 357 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 416
N ++PNKRPLSSMTP I+ KD++ +G GG II +V Q + H GME AAV+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 417 PRVY 420
PR+Y
Sbjct: 112 PRIY 115
>pdb|2Z8I|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 190
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 10/166 (6%)
Query: 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAP 355
T+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+MDDFS P + L
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGD 60
Query: 356 ANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQ 415
AN + PNKRPLSSM+P I+ KD + V G GG II V Q+ +N G+ A
Sbjct: 61 ANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATN 120
Query: 416 NPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 461
PR +H+ +P+ + E S ++ LE +G ++ K
Sbjct: 121 APRFHHQWLPDELRVEK---------GFSPDTLKLLEAKGQKVALK 157
>pdb|2Z8J|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
Length = 190
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 298 SHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAPA 356
+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+MDDFS P + L A
Sbjct: 2 THYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDA 61
Query: 357 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 416
N + PNKRPLSSM+P I+ KD + V G GG II V Q+ +N G+ A
Sbjct: 62 NAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNA 121
Query: 417 PRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 461
PR +H+ +P+ + E S ++ LE +G ++ K
Sbjct: 122 PRFHHQWLPDELRVEK---------GFSPDTLKLLEAKGQKVALK 157
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 102/423 (24%), Positives = 173/423 (40%), Gaps = 43/423 (10%)
Query: 4 GIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND--TEAKYTGALS-IGVPGEIA 60
G+GG F ++R Q + A +A S D YE+ T+ G + I VPG
Sbjct: 56 GLGGDLFALIRDE-NGQIXDLNGSGQASRAVSIDYYESXGLTKIPERGPYAAITVPGIAG 114
Query: 61 GLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNG 120
E + K + +PAI+ A GF + IA A VI RG +F PNG
Sbjct: 115 SWDEIFRKFATXDIADILEPAIRTASAGFPITQNYSDSIARSAPVIGQYRGWSSIFXPNG 174
Query: 121 KLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVD 180
+ +G+ +LA+S +E+G + Y+G++ + ++ + G L+ DLR Y+
Sbjct: 175 SVPVAGEILKQPDLAESFRLXSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPL 234
Query: 181 VMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALKHMF 240
+ + + + I P S G + I +S+G + + E + +
Sbjct: 235 IGKPVFTDLDEFRIYETSPNSQGITVIEWIRGX-ESHGYDSRTXWEAKIEDIFETXEEAY 293
Query: 241 AVRMTLGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQLRDHG---- 296
R + DP + N +++ S + + K RDH
Sbjct: 294 DKRRKITDPSYXN----IAQHDSANGKKDGLPK-------------------RDHNDIGD 330
Query: 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 356
T++F I D+E +VS+ + FG+GI+ TG VL N F++ +
Sbjct: 331 TTYFSISDSEGRSVSIIQSNYXGFGSGIVPKGTGFVLQNRGSYFTLQRD---------HP 381
Query: 357 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAV-TQVFINHFILGMEPLAAVQ 415
N + P KR ++ + K++ L +G GG +I P V Q+ +P A +
Sbjct: 382 NALXPGKRTFHTLAACXVEKEHDLYASLGSXGG-DIQPQVQXQILXEILKDNTDPQAILD 440
Query: 416 NPR 418
PR
Sbjct: 441 KPR 443
>pdb|2DBU|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBX|B Chain B, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|D Chain D, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|B Chain B, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|D Chain D, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|B Chain B, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|D Chain D, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2DBW|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
Length = 190
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAP 355
T+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+ DDFS P + L
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQXDDFSAKPGVPNVYGLVGGD 60
Query: 356 ANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQ 415
AN + PNKRPLSS +P I+ KD + V G GG II V Q +N G+ A
Sbjct: 61 ANAVGPNKRPLSSXSPTIVVKDGKTWLVTGSPGGSRIITTVLQXVVNSIDYGLNVAEATN 120
Query: 416 NPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAKAGGAIVQFV 470
PR +H+ +P+ + E S ++ LE +G ++ K Q +
Sbjct: 121 APRFHHQWLPDELRVEK---------GFSPDTLKLLEAKGQKVALKEAXGSTQSI 166
>pdb|2NQO|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2QM6|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|3FNM|B Chain B, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|D Chain D, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 188
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAP 355
T+H+ + D NAVS+T T+N ++G+ G +LNNEMDDFSI P + L
Sbjct: 1 TTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGD 60
Query: 356 ANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQ 415
AN IE NKRPLSSM+P I+ K+N++ V+G GG II V QV N M AV
Sbjct: 61 ANAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVS 120
Query: 416 NPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 461
PR + + +P+ + E + + + K L K G+Q+ K
Sbjct: 121 APRFHMQWLPDELRIEKFG--------MPADVKDNLTKMGYQIVTK 158
>pdb|2QMC|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
Length = 188
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 298 SHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAPA 356
+H+ + D NAVS+T T+N ++G+ G +LNNEMDDFSI P + L A
Sbjct: 2 THYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDA 61
Query: 357 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 416
N IE NKRPLSSM+P I+ K+N++ V+G GG II V QV N M AV
Sbjct: 62 NAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSA 121
Query: 417 PRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 461
PR + + +P+ + E + + + K L K G+Q+ K
Sbjct: 122 PRFHMQWLPDELRIEKFG--------MPADVKDNLTKMGYQIVTK 158
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 12/204 (5%)
Query: 53 IGVPGEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGL 112
IGVPG +AG +G L L QPAI A++GF V L + I +D+
Sbjct: 99 IGVPGFVAGXEYIHDNYGSLPXGELLQPAINYAEKGFKVDDSLTXRLDLAKPRIYSDK-- 156
Query: 113 RQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIE 172
+F PNG+ +++G+ +LA++L+ + ++G + Y G V + K + +++E
Sbjct: 157 LSIFYPNGEPIETGETLIQTDLARTLKKIQKEGAKGFYEGGVARAISKTAK-----ISLE 211
Query: 173 DLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDS---YGSSDSAKGNLGL 229
D++ YKV+V + N GY + PPP SG V + L + + Y D
Sbjct: 212 DIKGYKVEVRKPVKGNYXGYDVYTAPPPFSG-VTLLQXLKLAEKKEVYKDVDHTATYXSK 270
Query: 230 HRLIEALKHMFAVRMTLGDPKFVN 253
I + + + LGDP +VN
Sbjct: 271 XEEISRIAYQ-DRKKNLGDPNYVN 293
>pdb|3G9K|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|F Chain F, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 177
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 356
T+HF I+D + VS T T++ FG G + G LNN++ +F
Sbjct: 1 TTHFVIIDRDGTVVSSTNTLSNFFGTGKYTA--GFFLNNQLQNFG-----------SEGF 47
Query: 357 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 416
N EP KR + P ++ KD + G+ GS G N IP + ++ + G L + N
Sbjct: 48 NSYEPGKRSRTFXAPTVLKKDGETIGI--GSPGGNRIPQILTPILDKYTHGKGSLQDIIN 105
Query: 417 PRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 461
+ ++E T I++S E K L ++G +K K
Sbjct: 106 EYRF--------TFEKNTAY--TEIQLSSEVKNELSRKGLNVKKK 140
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 150 YNGTVGEKLVKDVREAGGILTIEDLRSY-KVDVMDAMSANAMGYTISGMPPPSSGTVGMS 208
+ G + K+ DV+ G D+ Y + +D + N +S P P+ +G+
Sbjct: 875 FKGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDN-----VSMYPSPTGVMIGID 929
Query: 209 MILNIFDSYGSSDSA-------------KGNLGLHRLIEALKHMFAVRMTLGDPKFVNNT 255
+ N++D+YG+ + K N L+ L E ++ + + F+N++
Sbjct: 930 LAYNMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSS 989
Query: 256 N 256
N
Sbjct: 990 N 990
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 150 YNGTVGEKLVKDVREAGGILTIEDLRSY-KVDVMDAMSANAMGYTISGMPPPSSGTVGMS 208
+ G + K+ DV+ G D+ Y + +D + N +S P P+ +G+
Sbjct: 842 FKGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDN-----VSMYPSPTGVMIGID 896
Query: 209 MILNIFDSYGSSDSA-------------KGNLGLHRLIEALKHMFAVRMTLGDPKFVNNT 255
+ N++D+YG+ + K N L+ L E ++ + + F+N++
Sbjct: 897 LAYNMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSS 956
Query: 256 N 256
N
Sbjct: 957 N 957
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 244 MTLGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQ-LRDHGTSHFCI 302
+T+ P +++T T + + E+ Q+K F +T PPD + W + + + GTS
Sbjct: 9 LTVNGPPIISSTQTQHAL----HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYT 64
Query: 303 VD---AERNAVSMTTTVN 317
V+ E +S T N
Sbjct: 65 VETISTEEGVISTLTISN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,792,707
Number of Sequences: 62578
Number of extensions: 671456
Number of successful extensions: 1806
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1750
Number of HSP's gapped (non-prelim): 31
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)