Query 010301
Match_columns 513
No_of_seqs 208 out of 1321
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e0w_A Gamma-glutamyltranspept 100.0 5E-134 2E-138 1092.3 47.2 481 1-513 65-556 (556)
2 2nlz_A Cephalosporin acylase; 100.0 2E-129 6E-134 1055.1 50.2 463 1-513 64-539 (547)
3 2i3o_A Gamma-glutamyltransfera 100.0 5E-126 2E-130 1022.4 40.7 453 1-513 53-515 (516)
4 2v36_A Gamma-glutamyltranspept 100.0 1.6E-84 5.6E-89 675.1 28.8 307 1-312 61-375 (376)
5 2qmc_A GGT, gamma-glutamyltran 100.0 3.6E-78 1.2E-82 625.4 28.3 284 1-287 76-367 (377)
6 2dg5_A Gamma-glutamyltranspept 100.0 4.2E-77 1.4E-81 617.0 25.3 284 1-287 65-356 (366)
7 3g9k_L Capsule biosynthesis pr 100.0 2.9E-72 1E-76 569.2 23.8 252 1-276 61-314 (323)
8 2dg5_B Gamma-glutamyltranspept 100.0 4.6E-61 1.6E-65 455.2 22.1 188 297-513 1-190 (190)
9 2qmc_B GGT, gamma-glutamyltran 100.0 4.9E-59 1.7E-63 440.4 20.6 184 297-507 1-187 (188)
10 2v36_B Gamma-glutamyltranspept 100.0 9.5E-59 3.2E-63 439.1 16.8 179 297-513 1-180 (193)
11 3g9k_S Capsule biosynthesis pr 100.0 9.5E-56 3.3E-60 414.1 19.1 171 297-511 1-174 (177)
12 4gdv_A L-asparaginase; NTN enz 81.6 16 0.00055 36.3 12.7 27 293-319 166-192 (310)
13 1p4k_A N(4)-(beta-N-acetylgluc 74.9 21 0.0007 35.3 11.0 27 293-319 148-174 (295)
14 1apy_B Aspartylglucosaminidase 72.2 11 0.00038 33.1 7.5 23 297-319 1-23 (141)
15 3cuq_A Vacuolar-sorting protei 44.9 8 0.00027 36.9 1.7 72 96-178 24-104 (234)
16 1u5t_A Appears to BE functiona 44.9 14 0.00049 35.1 3.5 54 125-179 51-124 (233)
17 2gez_B L-asparaginase beta sub 42.3 22 0.00075 30.9 4.0 23 297-319 1-23 (133)
18 1k2x_B Putative L-asparaginase 42.0 21 0.00073 31.3 3.9 23 297-319 1-23 (143)
19 3c17_A L-asparaginase precurso 38.2 27 0.00093 34.8 4.4 27 293-319 174-200 (320)
20 2a8j_A Taspase 1, threonine as 31.1 34 0.0012 35.4 3.9 27 294-320 231-257 (420)
21 1u5t_B Defective in vacuolar p 29.8 15 0.0005 33.3 0.8 26 148-174 11-45 (169)
22 3cuq_B Vacuolar protein-sortin 28.1 19 0.00064 33.9 1.2 29 147-176 71-103 (218)
23 1x58_A Hypothetical protein 49 25.0 53 0.0018 24.6 3.0 23 56-79 13-35 (62)
24 2vqe_K 30S ribosomal protein S 24.3 51 0.0018 28.3 3.2 24 294-317 24-47 (129)
25 3bbn_K Ribosomal protein S11; 22.8 70 0.0024 27.9 3.8 27 294-320 37-63 (140)
26 2xvc_A ESCRT-III, SSO0910; cel 21.7 28 0.00095 25.7 0.8 24 156-179 13-37 (59)
No 1
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP, post-translational PROC maturation, transferase; 2.55A {Escherichia coli K12} SCOP: d.153.1.6
Probab=100.00 E-value=4.8e-134 Score=1092.33 Aligned_cols=481 Identities=34% Similarity=0.543 Sum_probs=406.8
Q ss_pred CCcCcccCeeEEEEECCCCCEEEEEeeeccccCCChhhhccC-----ccccccCCcccccccHHHHHHHHHHhcCCCCHH
Q 010301 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHGRLAWR 75 (513)
Q Consensus 1 ~ssGiGGggf~lv~~~~~~~~~~id~r~~AP~~a~~~~~~~~-----~~~~~~G~~sv~VPG~v~G~~~ah~~~G~l~w~ 75 (513)
+|||||||+|||||+ +++++++|||||+||+++++|||.+. +..+..|+++|+|||+|+||+++|+|||||||+
T Consensus 65 ~~sGiGGggf~lv~~-~~~~~~~id~re~AP~~at~d~~~~~~g~~~~~~~~~G~~av~VPG~v~g~~~a~~~~G~Lpw~ 143 (556)
T 2e0w_A 65 QAGNLGGGGFMLIRS-KNGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLN 143 (556)
T ss_dssp TTCCSSSEEEEEEEC-TTSCEEEEEECCBCCCC--------------------CCCCCCBCCHHHHHHHHHHHHCSSCHH
T ss_pred cccCCCCCeEEEEEe-CCCCEEEEEeeccCcccCCHhHHhhccCCcCCccccCCccccccchhHHHHHHHHHHhCCCCHH
Confidence 689999999999997 78999999999999999999999643 234679999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHHHHHhcCcccccccc-cCCeecCCCCeeeCHHHHHHHHHHHHhCCCccccchH
Q 010301 76 ALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFA-PNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTV 154 (513)
Q Consensus 76 ~ll~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~~~~f~-~~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~i 154 (513)
+||+|||+|||+||+|++.++..|+...+.|.++|+++++|+ ++|+++++||+|+||+||+|||+||++|+++||+|+|
T Consensus 144 ~ll~PAI~lA~~Gf~V~~~la~~~~~~~~~l~~~p~~~~~f~~~~G~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~i 223 (556)
T 2e0w_A 144 KVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTI 223 (556)
T ss_dssp HHHHHHHHHHHHCEECCHHHHHHHHHTHHHHSTTSHHHHHHHEETTEECCTTCEECCHHHHHHHHHHHHHCTHHHHHSHH
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHhHHHhhcCchHHHhccCCCCccCCCCCEeeCHHHHHHHHHHHhhCcccccCCHH
Confidence 999999999999999999999999988888999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHhccCCCccccCeEEeeCCeEEEecCCCCChHHHHHHHHHHHhcCCCCCC-CCChHHHHHHH
Q 010301 155 GEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDS-AKGNLGLHRLI 233 (513)
Q Consensus 155 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~~~g~~v~~~ppPs~G~~~l~~~L~ile~~~~~~~-~~~~~~~h~l~ 233 (513)
|++|+++++++||+||++||++|+++|++||+++|+||+||++||||||+++++++|||||+|++... ..+++++|+++
T Consensus 224 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~yrg~~v~~~pPpssGG~~~l~~L~iLe~~~~~~~~~~s~~~~H~~~ 303 (556)
T 2e0w_A 224 AEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMA 303 (556)
T ss_dssp HHHHHHHHHHSSCCCCHHHHHTCCCEEECCEEEEETTEEEEECCTTBSSHHHHHHHHHHHHTSCSSSSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHhhCCcceeCceEEEeCCeEEEECCCCCcHHHHHHHHHHHHhcCCccccCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999998753 35689999999
Q ss_pred HHHHHHHHHHhh-cCCCCCCCCchhhhhcCCHHHHHHHHhhcCCCCCCCCCccccccc-CCCCCCceEEEEEcCCCCEEE
Q 010301 234 EALKHMFAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWS-QLRDHGTSHFCIVDAERNAVS 311 (513)
Q Consensus 234 Ea~k~a~a~R~~-lgDp~f~~v~~~~~~lls~~ya~~~~~~I~~~~~~~~~~~~~~~~-~~~~~~Tth~svvD~~GnaVs 311 (513)
||+|+||+||.. +|||+|++++ +++|||++|+++++++|+++++.++.+|++... ..+.++||||||+|++||+||
T Consensus 304 EA~k~A~adR~~~lgDp~f~~vp--~~~Lls~~ya~~~~~~I~~~~a~~~~~~~~~~~~~~~~~~Tth~svvD~~GnaVS 381 (556)
T 2e0w_A 304 EAEKYAYADRSEYLGDPDFVKVP--WQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYESNQATHYSVVDKDGNAVA 381 (556)
T ss_dssp HHHHHHHHHHGGGC-------CC--GGGGGCHHHHHHHHHHCCSSCCCCHHHHSCC--CCCCCSCCEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHhcCCccccccc--HHHhcCHHHHHHHHHhcCccccCCccccCCCCCCCCCCCCCEEEEEEcCCCCEEE
Confidence 999999999986 9999999987 899999999999999999988876544443221 124589999999999999999
Q ss_pred EEeccCCCCCceeecCCceeEeccCCCCccCCCC-CCCCCCCCCCCCcCCCCCCCCCCCcceEEEecCceeEEeeCCCcc
Q 010301 312 MTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTE-ISPDKLPPAPANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGM 390 (513)
Q Consensus 312 ~T~Si~~~FGSg~~~p~tGi~lNn~m~~Fs~~~~-~~~~~~~p~~~N~i~PgKRP~ssm~Ptiv~~~g~~~l~~Ga~GG~ 390 (513)
+|+|||..||||+|+|+|||+|||+|+||++.++ .|.||++++++|+|+|||||+|||||+||+++|+++|++|+|||+
T Consensus 382 ~t~Si~~~FGSgv~~p~tGi~lNN~~~dFs~~pg~~n~~gl~~~~~N~i~PgKRP~ssm~Ptiv~~~g~~~l~~Gs~GG~ 461 (556)
T 2e0w_A 382 VTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGS 461 (556)
T ss_dssp EEEECSSTTTTSCBCGGGCCBCCCCC---------------------------CCCBCCCCEEEEETTEEEEEECCCSTT
T ss_pred EeccCCCCcCCeEEcCCCceEecCCCCCcCCCCCCCccccCCCCcccccCCCCCccccCCCeEEEeCCcEEEEEECCChH
Confidence 9999999999999999999999999999997554 588999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHhhCCccccccCCceEEeccccccCCcccCCCHHHHHHHHhcCCEEEEecCCceEEEE
Q 010301 391 NIIPAVTQVFINHFILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAKAGGAIVQFV 470 (513)
Q Consensus 391 ~i~~~~~qvl~~~l~~g~~l~~AI~aPR~~~~~~p~~~~~E~~~~~~~~~~~~~~~~~~~L~~~Gh~v~~~~~~~~~~~i 470 (513)
+|||+++|+|+|+++|||++||||++||||+|+.|+.+.+|. ++++++++.|+++||+|+.....+.+|+|
T Consensus 462 ~i~~~~~q~l~n~ld~gm~~q~Ai~aPR~~~~~~p~~~~~E~---------~~~~~~~~~L~~~Gh~v~~~~~~g~~qaI 532 (556)
T 2e0w_A 462 RIITTVLQMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEK---------GFSPDTLKLLEAKGQKVALKEAMGSTQSI 532 (556)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHSCCEECCTTTTCEEECS---------CSCHHHHHHHHHTTCCEEECSCCCCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCEEeecCCCCeEEECC---------CCCHHHHHHHHhCCCeeEEcCCCceEEEE
Confidence 999999999999999999999999999999999999999998 79999999999999999876656778999
Q ss_pred EEcccCCccccccccCccCcccccCCeEEEeecCCCCC-ccccC
Q 010301 471 VQTLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKDG-RPAAV 513 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~aDpRr~G-~a~g~ 513 (513)
.++. +|.++|++||||+| .|+||
T Consensus 533 ~~~~--------------------~g~~~g~sDpR~~G~~a~g~ 556 (556)
T 2e0w_A 533 MVGP--------------------DGELYGASDPRSVDDLTAGY 556 (556)
T ss_dssp EECT--------------------TSCEEEEECTTSTTCEEEEC
T ss_pred EEeC--------------------CCeEEEEeCCCCCCCCCccC
Confidence 8753 68899999999988 68887
No 2
>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} SCOP: d.153.1.6
Probab=100.00 E-value=1.6e-129 Score=1055.13 Aligned_cols=463 Identities=26% Similarity=0.409 Sum_probs=426.7
Q ss_pred CCcCcccCeeEEEEECCCCCEEEEEeeeccccCCChhhhccC--c-cccccCCcccccccHHHHHHHHHHhcCCCCHHHH
Q 010301 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND--T-EAKYTGALSIGVPGEIAGLHEAWLKHGRLAWRAL 77 (513)
Q Consensus 1 ~ssGiGGggf~lv~~~~~~~~~~id~r~~AP~~a~~~~~~~~--~-~~~~~G~~sv~VPG~v~G~~~ah~~~G~l~w~~l 77 (513)
+|||||||+|||||++ + ++++||+||+||++++++||.+. . .++..|+++|+|||+|+||+++|+|||||||++|
T Consensus 64 ~~sGiGGggf~lv~~~-~-~~~~id~re~AP~~a~~~~~~~~g~~~~~~~~G~~av~VPG~v~g~~~a~~~~G~Lpw~~l 141 (547)
T 2nlz_A 64 TSNGIGSDAFALVWTK-G-KLHGLNGSGRAPMSLTMEAVKAKGYEQELPPYGVIPVTVPGAPGAWAELAKMYGNLPLAAS 141 (547)
T ss_dssp TSCCTBCEEEEEEEET-T-EEEEEEECCCCCTTCCHHHHHTTTCCSSCCSSSSTTCCCCCHHHHHHHHHHHHCSSCHHHH
T ss_pred cccCCCCceEEEEEEC-C-ceEEEecccCCcccCCHHHHhhcCCCccCCCCCCcccccchHHHHHHHHHHHhCCCCHHHH
Confidence 6899999999999974 4 89999999999999999999753 2 5678999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHHHHHHhcCcc------cccccccCCeecCCCCeeeCHHHHHHHHHHHHhCCCcccc
Q 010301 78 FQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRG------LRQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYN 151 (513)
Q Consensus 78 l~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~------~~~~f~~~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~ 151 (513)
|+|||+|||+||+|++.++..|+...+.|.++|+ ++++|+++|+++++||+|+||+||+|||+||++|+++||+
T Consensus 142 l~PAI~lA~~Gf~Vs~~la~~~~~~~~~l~~~p~~~~~~~~~~~f~~~G~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~ 221 (547)
T 2nlz_A 142 LAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTEWTDDVYQPWFDTFAPKGRAPRVGEVWRSQGHADTLRSIAESNGESFYR 221 (547)
T ss_dssp THHHHHHHHHCEECCHHHHHHHHHHHHHHHHHCCSSTTHHHHHHHCTTSSCCCTTCEECCHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHHhcCCcccchhhHHHHcccCCccCCCCCEecCHHHHHHHHHHHHhCchhhcC
Confidence 9999999999999999999999988888888888 8999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCCCHHHhccCCCccccCeEEeeCCeEEEecCCCCChHHHHHHHHHHHhcCCCCCCCCChHHHHH
Q 010301 152 GTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHR 231 (513)
Q Consensus 152 G~iA~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~~~g~~v~~~ppPs~G~~~l~~~L~ile~~~~~~~~~~~~~~h~ 231 (513)
|+||++|+++++++||+||++||++|+++|++||+++|+||+||++|||||| ++++++|||||+|++.. ..+++++|+
T Consensus 222 G~iA~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~yrg~~v~~~pPps~G-~~~l~~L~iLe~~~l~~-~~s~~~~H~ 299 (547)
T 2nlz_A 222 GELADQIHAFFDKHGGYLTKEDLACYRPEWVEPISIDYRGYRVWEIPPNGQG-LVALEALNIVKGFEFYH-KDTVDTYHK 299 (547)
T ss_dssp SHHHHHHHHHHHHTTCCCCHHHHHTCCCEEECCEEEEETTEEEEECCTTBTT-HHHHHHHHHHTTSCCSC-SSSHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHhhCCceeeCCeEEEeCCceEEECCCCcHH-HHHHHHHHHHhcCCCCC-CCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 55788999999999876 567899999
Q ss_pred HHHHHHHHHHHHhh-cCCCCCCCCchhhhhcCCHHHHHHHHhhcCCCCCCCCCcccccccCCCCCCceEEEEEcCCCCEE
Q 010301 232 LIEALKHMFAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQLRDHGTSHFCIVDAERNAV 310 (513)
Q Consensus 232 l~Ea~k~a~a~R~~-lgDp~f~~v~~~~~~lls~~ya~~~~~~I~~~~~~~~~~~~~~~~~~~~~~Tth~svvD~~GnaV 310 (513)
++||+|+||+||.. +|||+|++++ +++|||++|+++++++|+++ +.++.... .++++||||||+|++||+|
T Consensus 300 ~~EA~k~A~adR~~~lgDp~f~~vp--~~~Lls~~ya~~~~~~I~~~-a~~~~~~~-----p~~~~Tth~svvD~~GnaV 371 (547)
T 2nlz_A 300 QIEAMKLAFVDGMKYVTEPSDMSVS--VEQLLSDEYATERRKEIGEQ-ALTPEPGT-----PPRGGTVYLATADGDGNMV 371 (547)
T ss_dssp HHHHHHHHHHHHHHHCSSGGGCSSC--HHHHTCHHHHHHHHTTCCSS-CCCCCCCC-----C----CEEEEEEETTSCEE
T ss_pred HHHHHHHHHHHHHHhcCCccccccc--HHHhcCHHHHHHHHHhcccc-cCCCCCCC-----CCCCCCEEEEEEcCCCCEE
Confidence 99999999999975 9999999986 89999999999999999987 54432211 2457999999999999999
Q ss_pred EEEeccCCCCCceeecCCceeEeccCCCCccCCCCCCCCCCCCCCCCcCCCCCCCCCCCcceEEEecCceeEEeeCCCcc
Q 010301 311 SMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGM 390 (513)
Q Consensus 311 s~T~Si~~~FGSg~~~p~tGi~lNn~m~~Fs~~~~~~~~~~~p~~~N~i~PgKRP~ssm~Ptiv~~~g~~~l~~Ga~GG~ 390 (513)
|+|+|||..||||+|+|+|||+|||+|++|++. |+++|+|+|||||+|||||+||+++|+++|++|+|||+
T Consensus 372 S~t~Si~~~FGSgv~~pgtGi~LNN~~~~Fs~~---------p~~~N~i~PgKRP~ssm~Ptiv~~~g~~~l~~Gs~GG~ 442 (547)
T 2nlz_A 372 SFIQSNYMGFGSGVVVPGTGIAMQNRGHNFSLD---------PNHDNALKPGKRTYHTIIPGFLTKNDQPIGPFGVMGGF 442 (547)
T ss_dssp EEEEECSSTTCSSCEETTTTEEBCCGGGGSBCC---------TTSTTBCCTTCCCCBCCCCEEEEESSCEEEEEEECSGG
T ss_pred EEEccCCCccCCeeecCCceEEeeCCCCCCCCC---------CCCCCcCCCCCccccCCCCeEEEeCCceEEEEECCchH
Confidence 999999999999999999999999999999975 35689999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHhhCCccccccCCceEEeccccccCCcccCCCHHHHHHHHhcCCEEEEecC---CceE
Q 010301 391 NIIPAVTQVFINHFILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAKAG---GAIV 467 (513)
Q Consensus 391 ~i~~~~~qvl~~~l~~g~~l~~AI~aPR~~~~~~p~~~~~E~~~~~~~~~~~~~~~~~~~L~~~Gh~v~~~~~---~~~~ 467 (513)
+|||+++|+|+|+++|||++||||++||||+| .++.+.+|. ++++++++.|+++||+|+.... .+.+
T Consensus 443 ~i~~~~~qvl~n~ld~gm~~q~Ai~aPR~~~~-~~~~~~~E~---------~~~~~~~~~L~~~Gh~v~~~~~~~~~g~~ 512 (547)
T 2nlz_A 443 MQPQGHMQVMMNTIDFGLNPQAALDAPRWQWT-NGKQVQVEP---------TFPVDIAQALVRRGHKIQVVLDEGAFGRG 512 (547)
T ss_dssp GHHHHHHHHHHHHHTTCCCHHHHHHSCCEEEC-SSSEEEECT---------TSCHHHHHHHHHTTCEEEECCCTTTTCCE
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhCCEeeec-CCCeEEecC---------CCCHHHHHHHHHCCCeeEeccCCCcCcEE
Confidence 99999999999999999999999999999998 578899997 6999999999999999987653 4779
Q ss_pred EEEEEcccCCccccccccCccCcccccCCeEEEeecCCCCCccccC
Q 010301 468 QFVVQTLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKDGRPAAV 513 (513)
Q Consensus 468 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~aDpRr~G~a~g~ 513 (513)
|+|.++. + +|.++|++||||+|.|+||
T Consensus 513 qaI~~~~-----------~--------~g~~~g~sDpR~~G~a~g~ 539 (547)
T 2nlz_A 513 QIIWRDP-----------T--------TGVLAGGTEPRTDGQVAAW 539 (547)
T ss_dssp EEEEECT-----------T--------TCCEEEEECTTSSCEEEEC
T ss_pred EEEEEEC-----------C--------CCEEEEEeCCCCCCeEEee
Confidence 9998762 0 5789999999999999886
No 3
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics, PSI, protein structure initiative; 2.03A {Thermoplasma acidophilum} SCOP: d.153.1.6
Probab=100.00 E-value=5.2e-126 Score=1022.41 Aligned_cols=453 Identities=23% Similarity=0.372 Sum_probs=408.2
Q ss_pred CCcCcccCeeEEEEECCCCCEEEEEeeeccccCCChhhhccC--ccccccCCcc-cccccHHHHHHHHHHhcCCCCHHHH
Q 010301 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND--TEAKYTGALS-IGVPGEIAGLHEAWLKHGRLAWRAL 77 (513)
Q Consensus 1 ~ssGiGGggf~lv~~~~~~~~~~id~r~~AP~~a~~~~~~~~--~~~~~~G~~s-v~VPG~v~G~~~ah~~~G~l~w~~l 77 (513)
+|||||||+|||||++ ++++++||+||+||++++++||.+. ..++..|++| |+|||+|+||+++|+|||||||++|
T Consensus 53 ~~~GiGGggf~lv~~~-~~~~~~id~r~~AP~~a~~~~~~~~g~~~~~~~G~~a~v~VPG~v~g~~~a~~~~G~Lpw~~l 131 (516)
T 2i3o_A 53 NLCGLGGDLFALIRDE-NGQIMDLNGSGQASRAVSIDYYESMGLTKIPERGPYAAITVPGIAGSWDEIFRKFATMDIADI 131 (516)
T ss_dssp TSCCTTSEEEEEEECT-TCCEEEEEECCCBCTTCCHHHHHTTTCSSCCSSSTTTCCBCCCHHHHHHHHHHHHCCSCHHHH
T ss_pred cccCCCCceEEEEEeC-CCcEEEEECCcCCcccCCHHHHhhcCCCcCCCCCCcccCcCchHHHHHHHHHHHhCCCCHHHH
Confidence 6899999999999975 7899999999999999999999643 3567899999 9999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHHHHHHhcCcccccccccCCeecCCCCeeeCHHHHHHHHHHHHhCCCccccchHHHH
Q 010301 78 FQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEK 157 (513)
Q Consensus 78 l~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~~~~f~~~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~iA~~ 157 (513)
|+|||+|||+||+|++.++..|+...+.|.++|+++++|+++|+++++||+|+||+||+|||+||++|+++||+|+||++
T Consensus 132 l~PAI~lA~~Gf~Vs~~la~~~~~~~~~l~~~~~~~~~f~~~G~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~iA~~ 211 (516)
T 2i3o_A 132 LEPAIRTASAGFPITQNYSDSIARSAPVIGQYRGWSSIFMPNGSVPVAGEILKQPDLAESFRLMSEEGFRSFYDGSLADI 211 (516)
T ss_dssp HHHHHHHHHHCEECCHHHHHHHHHHHHHHTTCHHHHHHHSTTSSCCCTTCEECCHHHHHHHHHHHHHCTTHHHHSHHHHH
T ss_pred HHHHHHHHhcCCcCCHHHHHHHHHHHHHhhcChhHHhhhccCCccCCCCCEecCHHHHHHHHHHHhhCcccccCCHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHhccCCCccccCeEEeeCCeEEEecCCCCChHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHH
Q 010301 158 LVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALK 237 (513)
Q Consensus 158 iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~~~g~~v~~~ppPs~G~~~l~~~L~ile~~~~~~~~~~~~~~h~l~Ea~k 237 (513)
|+++++++||+||++||++|+++|++||+++|+||+||++|||||| ++++++|||||+|++.....+++++|+++||+|
T Consensus 212 iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~yrg~~v~~~pPps~G-~~~l~~L~iLe~~~~~~~~~~~~~~H~~~EA~k 290 (516)
T 2i3o_A 212 IIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDEFRIYETSPNSQG-ITVIEWIRGMESHGYDSRTMWEAKIEDIFETME 290 (516)
T ss_dssp HHHTTTTTCCCCCHHHHHHCCCEEECCEEEEETTEEEEECCTTBTT-HHHHHHHHHHHHTTCCTTTGGGCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHhhCCcceeCceEEEeCCeEEEECCCCcHH-HHHHHHHHhhhcCCcccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 558889999999998755445789999999999
Q ss_pred HHHHHHhhcCCCCCCCCchhhhhcCCHHHHHHHHhhcCCCCCCCCCcccccccCCCCCCceEEEEEcCCCCEEEEEeccC
Q 010301 238 HMFAVRMTLGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQLRDHGTSHFCIVDAERNAVSMTTTVN 317 (513)
Q Consensus 238 ~a~a~R~~lgDp~f~~v~~~~~~lls~~ya~~~~~~I~~~~~~~~~~~~~~~~~~~~~~Tth~svvD~~GnaVs~T~Si~ 317 (513)
+||+||.++|||+|++++ +++| +|+++. ++.++. ..+.++||||||+|++||+||+|+|+|
T Consensus 291 ~A~adR~~lgDp~f~~vp--~~~L---~y~~~~-------~a~~~~-------~~~~~~Tth~svvD~~GnaVS~t~Si~ 351 (516)
T 2i3o_A 291 EAYDKRRKITDPSYMNIA--QHDS---ANGKKD-------GLPKRD-------HNDIGDTTYFSISDSEGRSVSIIQSNY 351 (516)
T ss_dssp HHHHHHTTCCCGGGTC------------------------CCCBCC-------SCCCCEEEEEEEEETTSCEEEEEEEEE
T ss_pred HHHHHHHhcCCccccccc--hHHH---HHHHhc-------cccCCC-------CCCCCCCEEEEEEcCCCCEEEEeccCC
Confidence 999999999999999886 7777 888871 222211 114578999999999999999999999
Q ss_pred CCCCceeecCCceeEeccCCCCccCCCCCCCCCCCCCCCCcCCCCCCCCCCCcceEEEecCceeEEeeCCCccchHHHHH
Q 010301 318 YAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVT 397 (513)
Q Consensus 318 ~~FGSg~~~p~tGi~lNn~m~~Fs~~~~~~~~~~~p~~~N~i~PgKRP~ssm~Ptiv~~~g~~~l~~Ga~GG~~i~~~~~ 397 (513)
+.||||+|+|+|||+|||+|++|++. |+++|+|+|||||+|||||+||+++|+++|++|+|||++|||+++
T Consensus 352 ~~FGSgv~~p~tGi~lnN~~~~Fs~~---------p~~~N~i~PgKRP~ssm~Ptiv~~~g~~~l~~Gs~GG~~i~~~~~ 422 (516)
T 2i3o_A 352 MGFGSGIVPKGTGFVLQNRGSYFTLQ---------RDHPNALMPGKRTFHTLAACMVEKEHDLYASLGSMGGDIQPQVQM 422 (516)
T ss_dssp STTCSSCCCTTSCCCCCCGGGGSBCC---------TTSTTBCCTTCCCCBCCCCEEEEETTEEEEEEEECCSTTHHHHHH
T ss_pred CCcCCeeeeCCCceEEeCCCCccCCC---------CCCCCcCCCCCCcccCCCCeEEEeCCceEEEEECCCcHHHHHHHH
Confidence 99999999999999999999999975 356899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHhhCCcccc----ccCCceEEeccccccCCcccCCCHHHHHHHHhcCCEEEEecC---CceEEEE
Q 010301 398 QVFINHFILGMEPLAAVQNPRVYH----KLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAKAG---GAIVQFV 470 (513)
Q Consensus 398 qvl~~~l~~g~~l~~AI~aPR~~~----~~~p~~~~~E~~~~~~~~~~~~~~~~~~~L~~~Gh~v~~~~~---~~~~~~i 470 (513)
|+|+|+++|||++||||++||||+ |+.|+.+.+|.. ++++++++.| +||+|+.... .+.+|+|
T Consensus 423 q~l~n~ld~gm~~q~Ai~aPR~~~~~~~~~~~~~~~~E~~--------~~~~~~~~~L--~Gh~v~~~~~~~~~g~~qaI 492 (516)
T 2i3o_A 423 QILMEILKDNTDPQAILDKPRWTEPYTIYEAPGAVYVESE--------ELYRNVSKQI--SGRKVVLRDVSQEFGTAQIT 492 (516)
T ss_dssp HHHHHHTTCCSCHHHHHHSCCEECCCCTTSBCCCEEESSH--------HHHHHHHHHS--CSCCEEECCSSGGGCCEEEE
T ss_pred HHHHHHHhcCCCHHHHHhCCEEeeccccCCCCCeEEEecC--------CCCHHHHHHh--CCCEEEecCCCCcCceEEEE
Confidence 999999999999999999999998 677888999862 3889999999 9999987653 4679999
Q ss_pred EEcccCCccccccccCccCcccccCCeEEEeecCCCCCccccC
Q 010301 471 VQTLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKDGRPAAV 513 (513)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~aDpRr~G~a~g~ 513 (513)
.++. +|.++|++||||+|.|+||
T Consensus 493 ~~~~--------------------~g~~~g~sDpR~~G~a~g~ 515 (516)
T 2i3o_A 493 TLIR--------------------GDVVVGAADPRGDGIAIPY 515 (516)
T ss_dssp EEEG--------------------GGEEEEEECTTTBCEEEEE
T ss_pred EEeC--------------------CCeEEEEeCCCCCCeeeee
Confidence 8763 6899999999999999886
No 4
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_A*
Probab=100.00 E-value=1.6e-84 Score=675.11 Aligned_cols=307 Identities=31% Similarity=0.514 Sum_probs=273.9
Q ss_pred CCcCcccCeeEEEEECCCCCEEEEEeeeccccCCChhhhccC--ccc----cccCCcccccccHHHHHHHHHHhcCCCCH
Q 010301 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND--TEA----KYTGALSIGVPGEIAGLHEAWLKHGRLAW 74 (513)
Q Consensus 1 ~ssGiGGggf~lv~~~~~~~~~~id~r~~AP~~a~~~~~~~~--~~~----~~~G~~sv~VPG~v~G~~~ah~~~G~l~w 74 (513)
+|||||||+|||||+++++++++|||||+||++++++||.+. ..+ +..|+++|+|||+|+||+++|+|||+|||
T Consensus 61 ~~sGiGGggf~li~~~~~~~~~~id~re~AP~~a~~~~~~~~~g~~~~~~~~~~G~~av~VPG~v~g~~~a~~~~G~Lpw 140 (376)
T 2v36_A 61 MMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTRSM 140 (376)
T ss_dssp TTCSTTSEEEEEEECTTTCCEEEEECCCBCCTTCCTTTTBCSSSCBCCHHHHTTSGGGCCBCCHHHHHHHHHHHHCSSCH
T ss_pred cccCCCCCeEEEEEECCCCcEEEEEeeccCcccCCHhHhhhccCCcCCcccccCCCccccCchHHHHHHHHHHHHCCCCH
Confidence 689999999999998788999999999999999999999742 223 36899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHhcCcccccccccCCeecCCCCeeeCHHHHHHHHHHHHhCCCccccchH
Q 010301 75 RALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTV 154 (513)
Q Consensus 75 ~~ll~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~~~~f~~~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~i 154 (513)
++||+|||+|||+||+|++.++..|+...+.|.+ |+++++|+++|+++++||+|+||+||+|||+||++|+++||+|+|
T Consensus 141 ~~ll~PAI~lA~~Gf~Vs~~la~~~~~~~~~l~~-~~~~~~f~~~G~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~i 219 (376)
T 2v36_A 141 KQLITPSIKLAEKGFPIDSVLAEAISDYQEKLSR-TAAKDVFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTDAFYKGKF 219 (376)
T ss_dssp HHHHHHHHHHHHHCEECCHHHHHHHHHTHHHHTT-STTHHHHSTTSSCCCTTCEECCHHHHHHHHHHHHHCTHHHHSHHH
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcC-hhHHHHhccCCccCCCCCEEECHHHHHHHHHHHHhCcccccCCHH
Confidence 9999999999999999999999999988888888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHhccCCCccccCeEEeeCCeEEEecCCCCChHHHHHHHHHHHhcCCCCCC-CCChHHHHHHH
Q 010301 155 GEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDS-AKGNLGLHRLI 233 (513)
Q Consensus 155 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~~~g~~v~~~ppPs~G~~~l~~~L~ile~~~~~~~-~~~~~~~h~l~ 233 (513)
|++|+++++++||+||++||++|+++|++||+++|+||+||++|||||||++++++|||||+|++... .++++++|+++
T Consensus 220 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~yrg~~v~~~pPPssGG~~~l~~L~iLe~~~~~~~~~~s~~~~H~~~ 299 (376)
T 2v36_A 220 AKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGYQIATTPPPSSGGIFLLQMPKILDHFNLSQYDVRSWEKYQLLA 299 (376)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHCCCEEECCEEEEETTEEEEECCTTBSHHHHHHHHHHHHHTTCCC--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHhhCCcceeCceEEEeCCeEEEECCCCCcHHHHHHHHHHHHhcCCccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999998753 35689999999
Q ss_pred HHHHHHHHHHhh-cCCCCCCCCchhhhhcCCHHHHHHHHhhcCCCCCCCCCcccccccCCCCCCceEEEEEcCCCCEEEE
Q 010301 234 EALKHMFAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQLRDHGTSHFCIVDAERNAVSM 312 (513)
Q Consensus 234 Ea~k~a~a~R~~-lgDp~f~~v~~~~~~lls~~ya~~~~~~I~~~~~~~~~~~~~~~~~~~~~~Tth~svvD~~GnaVs~ 312 (513)
||+|+||+||.. +|||+|+++| +++|||++|+++++++|++ +.++.++.+......+++||||||+|++||+||.
T Consensus 300 EA~k~A~adR~~~lgDp~f~~vp--~~~Lls~~y~~~~~~~I~~--~~~~~~~~~~~~~~~~~~Tth~svvD~~GnaVS~ 375 (376)
T 2v36_A 300 ETMHLSYADRASYAGDPEFVNVP--LKGLLHPDYIKERQQLINL--DQVNKKPKAGDPWKYQEGSANYKQVEQPKDKVEG 375 (376)
T ss_dssp HHHHHHHHHHHHHCSCTTTSCCC--HHHHHCHHHHHHHHHTCBT--TBCCSSCCCCCGGGGSSSCCSSCCCCC-------
T ss_pred HHHHHHHHHHHHhcCCcccccCC--HHHhcCHHHHHHHHHhccc--cccccccCCCCCCCCCCCCEEEEEEcCCCCeEeC
Confidence 999999999986 9999999987 8999999999999999997 3333333332211123799999999999999985
No 5
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A* 2nqo_A
Probab=100.00 E-value=3.6e-78 Score=625.37 Aligned_cols=284 Identities=31% Similarity=0.508 Sum_probs=266.8
Q ss_pred CCcCcccCeeEEEEECCCCCEEEEEeeeccccCCChhhhccC-----ccccccCCcccccccHHHHHHHHHHhcCCCCHH
Q 010301 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHGRLAWR 75 (513)
Q Consensus 1 ~ssGiGGggf~lv~~~~~~~~~~id~r~~AP~~a~~~~~~~~-----~~~~~~G~~sv~VPG~v~G~~~ah~~~G~l~w~ 75 (513)
+|||||||+|||||+ +++++++|||||+||+++++|||.+. +..+..|+++|+|||+|+||+++|+|||||||+
T Consensus 76 ~~sGiGGggF~li~~-~~~~~~~id~re~AP~~at~d~~~~~~g~~~~~~~~~G~~av~VPG~v~g~~~a~~~~G~Lpw~ 154 (377)
T 2qmc_A 76 AAGNIGGGGFAVIHL-ANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLS 154 (377)
T ss_dssp TTCCSSSEEEEEEEC-TTSCEEEEEECCBCCTTCCTTTTBCTTSCBCTTTTTSSGGGCCBCCHHHHHHHHHHHHCCSCHH
T ss_pred cccCCCCCeEEEEEe-CCCCEEEEEeeccCcccCCHHHHhhccCCcCCccccCCCcccccchHHHHHHHHHHHHCCCCHH
Confidence 689999999999997 78999999999999999999999743 234578999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHHHHHhcCccccccccc-CCeecCCCCeeeCHHHHHHHHHHHHhCCCccccchH
Q 010301 76 ALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAP-NGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTV 154 (513)
Q Consensus 76 ~ll~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~~~~f~~-~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~i 154 (513)
+||+|||+|||+||+|++.++..|+...+.|..+|+++++|++ +|+++++||+|+||+||+|||+||++|+++||+|+|
T Consensus 155 ~ll~PAI~lA~~Gf~Vs~~la~~~~~~~~~l~~~p~~~~~f~~~~G~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~i 234 (377)
T 2qmc_A 155 QLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQV 234 (377)
T ss_dssp HHTHHHHHHHHHCEECCHHHHHHHHHHHHHHTTCHHHHHHHEETTTEECCTTCEECCHHHHHHHHHHHHHTTHHHHSHHH
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHhcChhHHhhccCCCCccCCCCCEeeCHHHHHHHHHHHHhCcHhhhCCHH
Confidence 9999999999999999999999999888889999999999996 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHhccCCCccccCeEEeeCCeEEEecCCCCChHHHHHHHHHHHhcCCCCC-CCCChHHHHHHH
Q 010301 155 GEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSD-SAKGNLGLHRLI 233 (513)
Q Consensus 155 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~~~g~~v~~~ppPs~G~~~l~~~L~ile~~~~~~-~~~~~~~~h~l~ 233 (513)
|++|+++++++||+||++||++|+++|++||+++|+||+||++||||||+++++++|||||+|++.. ..++++++|+++
T Consensus 235 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~yrg~~v~~~pPPssGG~~~l~~L~iLe~~~l~~~~~~s~~~~H~~~ 314 (377)
T 2qmc_A 235 AELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKNIHIAA 314 (377)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHTCCCEEECCEEEEETTEEEEECCTTBSHHHHHHHHHHHHTTSCHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHhhCCcceeCCeEEEeCCeEEEeCCCCCchHHHHHHHHHHHhcCCccccCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998999999999998754 235689999999
Q ss_pred HHHHHHHHHHhh-cCCCCCCCCchhhhhcCCHHHHHHHHhhcCCCCCCCCCcccc
Q 010301 234 EALKHMFAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMY 287 (513)
Q Consensus 234 Ea~k~a~a~R~~-lgDp~f~~v~~~~~~lls~~ya~~~~~~I~~~~~~~~~~~~~ 287 (513)
||+|+||+||.. +|||+|++++ +++|||++|+++++++|+++++.++.+|.+
T Consensus 315 EA~k~AfadR~~~lgDP~f~~vp--~~~LLs~~ya~~~~~~I~~~~a~~~~~~~~ 367 (377)
T 2qmc_A 315 EAMRQAYADRSVYMGDADFVSVP--VDKLINKAYAKKIFDTIQPDTVTPSSQIKP 367 (377)
T ss_dssp HHHHHHHHHHHHHCSCTTTSCCC--HHHHTCHHHHHHHHHTCBTTBCCCGGGCCG
T ss_pred HHHHHHHHHHHHhcCCccccccc--HHHhCCHHHHHHHHHhCCcccCCChhhcCC
Confidence 999999999986 9999999987 899999999999999999988877666554
No 6
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A 2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Probab=100.00 E-value=4.2e-77 Score=616.96 Aligned_cols=284 Identities=34% Similarity=0.573 Sum_probs=263.9
Q ss_pred CCcCcccCeeEEEEECCCCCEEEEEeeeccccCCChhhhccC-----ccccccCCcccccccHHHHHHHHHHhcCCCCHH
Q 010301 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHGRLAWR 75 (513)
Q Consensus 1 ~ssGiGGggf~lv~~~~~~~~~~id~r~~AP~~a~~~~~~~~-----~~~~~~G~~sv~VPG~v~G~~~ah~~~G~l~w~ 75 (513)
+|||||||+|||||++ ++++++|||||+||++++++||.+. +..+..|+++|+|||+|+||+++|+|||+|||+
T Consensus 65 ~~~GiGGggF~li~~~-~~~~~~id~re~AP~~a~~~~~~~~~g~~~~~~~~~G~~av~VPG~v~g~~~a~~~~G~Lpw~ 143 (366)
T 2dg5_A 65 QAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLN 143 (366)
T ss_dssp TTCCSSSEEEEEEECT-TSCEEEEEECCBCCTTCCTTTTBCTTSCBCHHHHHTSGGGCCBCCHHHHHHHHHHHHCCSCHH
T ss_pred ccCCCCCCeEEEEEcC-CCCEEEEeeeecCcccCCHHHHhhccCCcCCCccCCCCcccccchHHHHHHHHHHHHCCCCHH
Confidence 6899999999999965 8999999999999999999999753 234669999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHHHHHhcCcccccccc-cCCeecCCCCeeeCHHHHHHHHHHHHhCCCccccchH
Q 010301 76 ALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFA-PNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTV 154 (513)
Q Consensus 76 ~ll~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~~~~f~-~~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~i 154 (513)
+||+|||+|||+||+|++.++..|+...+.|..+|+++++|+ ++|+++++||+|+||+||+|||+||++|+++||+|+|
T Consensus 144 ~ll~PAI~lA~~Gf~Vs~~la~~~~~~~~~l~~~~~~~~~f~~~~G~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~i 223 (366)
T 2dg5_A 144 KVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTI 223 (366)
T ss_dssp HHHHHHHHHHHHCEECCHHHHHHHHHTGGGTGGGSHHHHHHHEETTEECCTTCEECCHHHHHHHHHHHHHCTHHHHTSHH
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHhcCchHHHHhcCCCCeECCCCCEeeCHHHHHHHHHHHHhCchhccCCHH
Confidence 999999999999999999999999987777888888888886 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHhccCCCccccCeEEeeCCeEEEecCCCCChHHHHHHHHHHHhcCCCCC-CCCChHHHHHHH
Q 010301 155 GEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSD-SAKGNLGLHRLI 233 (513)
Q Consensus 155 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~~~g~~v~~~ppPs~G~~~l~~~L~ile~~~~~~-~~~~~~~~h~l~ 233 (513)
|++|+++++++||+||++||++|+++|++||+++|+||+||++|||||||++++++|||||+|++.. ...+++++|+++
T Consensus 224 A~~iv~~~~~~GG~lt~~DLa~y~~~~~~Pl~~~yrg~~v~~~pPpssgG~~~l~~L~iLe~~~~~~~~~~s~~~~H~~~ 303 (366)
T 2dg5_A 224 AEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMA 303 (366)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHCCCEEECCEEEEETTEEEEECCTTBSHHHHHHHHHHHHTTSCHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHhhCCCceeCCeEEEeCCeEEEECCCCchHHHHHHHHHHhccccCccccCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888999999999998754 245689999999
Q ss_pred HHHHHHHHHHhh-cCCCCCCCCchhhhhcCCHHHHHHHHhhcCCCCCCCCCcccc
Q 010301 234 EALKHMFAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMY 287 (513)
Q Consensus 234 Ea~k~a~a~R~~-lgDp~f~~v~~~~~~lls~~ya~~~~~~I~~~~~~~~~~~~~ 287 (513)
||+|+||+||.. +|||+|++++ +++|||++|+++++++|+++++.++.+|.+
T Consensus 304 EA~k~A~adR~~~lgDp~f~~vp--~~~Lls~~ya~~~~~~I~~~~~~~~~~~~~ 356 (366)
T 2dg5_A 304 EAEKYAYADRSEYLGDPDFVKVP--WQALTNKAYAKSIADQIDINKAKPSSEIRP 356 (366)
T ss_dssp HHHHHHHHHHHHHCSCTTTSCCC--HHHHTCHHHHHHHHTTCBTTBCCCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcccccch--HHHhCCHHHHHHHHHhcCcccCCChhhcCC
Confidence 999999999986 9999999987 899999999999999999988776555543
No 7
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_L*
Probab=100.00 E-value=2.9e-72 Score=569.16 Aligned_cols=252 Identities=31% Similarity=0.498 Sum_probs=223.6
Q ss_pred CCcCcccCeeEEEEECCCCCEEEEEeeeccccCCChhhhccCccccccCCcccccccHHHHHHHHHHhcCCCCHHHHHHH
Q 010301 1 MASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMYENDTEAKYTGALSIGVPGEIAGLHEAWLKHGRLAWRALFQP 80 (513)
Q Consensus 1 ~ssGiGGggf~lv~~~~~~~~~~id~r~~AP~~a~~~~~~~~~~~~~~G~~sv~VPG~v~G~~~ah~~~G~l~w~~ll~P 80 (513)
+|||||||+|||||++. +++ +|||||+||+++ ..|.++|+|||+|+||+++|+|||+|||++||+|
T Consensus 61 ~~sGiGGggf~li~~~~-~~~-~id~r~~AP~~a------------~~G~~av~VPG~v~g~~~a~~~~G~Lpw~~ll~P 126 (323)
T 3g9k_L 61 HASGIGGGGGMLIISKD-KET-FIDYRETTPYFT------------GNQKPHIGVPGFVAGMEYIHDNYGSLPMGELLQP 126 (323)
T ss_dssp TTCCTTSEEEEEEECSS-CEE-EEECCCBCCC------------------CCCCBCCHHHHHHHHHHHHCCSCHHHHHHH
T ss_pred cccCCCCCeEEEEEeCC-CCE-EEEeeccCcHhH------------hcCCCcccCchHHHHHHHHHHHHCCCCHHHHHHH
Confidence 68999999999999754 888 999999999987 2478999999999999999999999999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHHHHHHhcCcccccccccCCeecCCCCeeeCHHHHHHHHHHHHhCCCccccchHHHHHHH
Q 010301 81 AIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVK 160 (513)
Q Consensus 81 AI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~~~~f~~~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~iA~~iv~ 160 (513)
||+|||+||+|++.++..|+...+.|..+|+++ |+++|+++++||+|+||+||+|||+||++|+++||+|+||++|++
T Consensus 127 AI~lA~~Gf~Vs~~la~~~~~~~~~l~~~~~~~--f~~~G~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~iA~~iv~ 204 (323)
T 3g9k_L 127 AINYAEKGFKVDDSLTMRLDLAKPRIYSDKLSI--FYPNGEPIETGETLIQTDLARTLKKIQKEGAKGFYEGGVARAISK 204 (323)
T ss_dssp HHHHHHHCEECCHHHHHHHHHHHHHHCCTTCGG--GSGGGSCCCTTCEECCHHHHHHHHHHHHHTTHHHHSHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHHHHHHHHHhcCCccc--ccCCCCCCCCCCEEECHHHHHHHHHHHHhCcccccCCHHHHHHHH
Confidence 999999999999999999999888898899888 889999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHhccCCCccccCeEEeeCCeEEEecCCCCChHHHHHHHHHHHhcCCCCCC-CCChHHHHHHHHHHHHH
Q 010301 161 DVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDS-AKGNLGLHRLIEALKHM 239 (513)
Q Consensus 161 ~~~~~GG~lt~~DLa~y~~~~~~Pl~~~~~g~~v~~~ppPs~G~~~l~~~L~ile~~~~~~~-~~~~~~~h~l~Ea~k~a 239 (513)
+ |+||++||++|+++|++||+++|+||+||++|||||| ++++++|||||+|++... .++++++|+++||+|+|
T Consensus 205 ~-----G~lt~~DLa~y~~~~~~Pl~~~yrg~~v~~~pPpssG-~~~l~~L~ile~~~~~~~~~~~~~~~H~~~EA~k~A 278 (323)
T 3g9k_L 205 T-----AKISLEDIKGYKVEVRKPVKGNYMGYDVYTAPPPFSG-VTLLQMLKLAEKKEVYKDVDHTATYMSKMEEISRIA 278 (323)
T ss_dssp H-----HTCCHHHHHTCCCEEECCEEEEETTEEEEECCTTSCH-HHHHHHHHHHHHTTGGGGTTSHHHHHHHHHHHHHHH
T ss_pred c-----CCCCHHHHhhCCceEeCCEEEEeCCeEEEeCCCCCHH-HHHHHHHHHHhcCCCccCCCCCHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999999996 557789999999998653 34589999999999999
Q ss_pred HHHHhh-cCCCCCCCCchhhhhcCCHHHHHHHHhhcCC
Q 010301 240 FAVRMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFD 276 (513)
Q Consensus 240 ~a~R~~-lgDp~f~~v~~~~~~lls~~ya~~~~~~I~~ 276 (513)
|+||.. +|||+|+++| +++|||++|+++++++|++
T Consensus 279 ~adR~~~lgDP~f~~vp--~~~Lls~~ya~~~~~~I~d 314 (323)
T 3g9k_L 279 YQDRKKNLGDPNYVNMD--PNKMVSDKYISTMKNENGD 314 (323)
T ss_dssp HHHHHHTTCC------C--HHHHTSHHHHHTCC-----
T ss_pred HHHHHHhcCCcccccCC--HHHhCCHHHHHHHHHhcCc
Confidence 999986 9999999987 8999999999999999985
No 8
>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B 2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
Probab=100.00 E-value=4.6e-61 Score=455.25 Aligned_cols=188 Identities=37% Similarity=0.553 Sum_probs=176.8
Q ss_pred ceEEEEEcCCCCEEEEEeccCCCCCceeecCCceeEeccCCCCccCCC-CCCCCCCCCCCCCcCCCCCCCCCCCcceEEE
Q 010301 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPT-EISPDKLPPAPANFIEPNKRPLSSMTPLIIT 375 (513)
Q Consensus 297 Tth~svvD~~GnaVs~T~Si~~~FGSg~~~p~tGi~lNn~m~~Fs~~~-~~~~~~~~p~~~N~i~PgKRP~ssm~Ptiv~ 375 (513)
||||||+|++||+||+|+|||..|||++++|+|||+|||+|+||++.+ ..|.|+++|+++|+|+|||||+|||||+||+
T Consensus 1 Tth~svvD~~GnaVS~T~Si~~~FGSgv~~p~tGi~LNN~m~dFs~~pg~~n~~g~~~~~~N~i~PgKRP~ssm~Ptiv~ 80 (190)
T 2dg5_B 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVV 80 (190)
T ss_dssp CEEEEEECTTSCEEEEEEECSSTTTTCEECGGGCCEECCGGGGSBSSTTCCCTTSCCCCSTTBCCTTCCCCBCCCCEEEE
T ss_pred CeEEEEECCCCCEEEEEecCCCCcCCeeEcCCccEEEeCCCCcccCCCCCcCCcCCCCCCccccCCCCcccccCCCEEEe
Confidence 899999999999999999999999999999999999999999999954 4588999999999999999999999999999
Q ss_pred ecCceeEEeeCCCccchHHHHHHHHHHHHHcCCCHHHHhhCCccccccCCceEEeccccccCCcccCCCHHHHHHHHhcC
Q 010301 376 KDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRG 455 (513)
Q Consensus 376 ~~g~~~l~~Ga~GG~~i~~~~~qvl~~~l~~g~~l~~AI~aPR~~~~~~p~~~~~E~~~~~~~~~~~~~~~~~~~L~~~G 455 (513)
++|+++|++|+|||++|||+++|+|+|++||||++||||++||||+|+.|+.+.+|. +++++++++|+++|
T Consensus 81 ~~g~~~l~~Gs~GG~~i~~~~~q~l~n~ld~gm~~q~Ai~aPR~~~~~~~~~~~~E~---------~~~~~~~~~L~~~G 151 (190)
T 2dg5_B 81 KDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEK---------GFSPDTLKLLEAKG 151 (190)
T ss_dssp ETTEEEEEECCCCGGGHHHHHHHHHHHHHTSCCCHHHHHHSCCEECCSSSCCEEECT---------TSCHHHHHHHHHTT
T ss_pred cCCcEEEEEECCCcchHHHHHHHHHHHHHccCCCHHHHhhCCEEeeccCCCeEEecC---------CCCHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred CEEEEecCCceEEEEEEcccCCccccccccCccCcccccCCeEEEeecCCC-CCccccC
Q 010301 456 HQLKAKAGGAIVQFVVQTLQNPINRIRKIGKGIDNAQALHGILTAVSDPRK-DGRPAAV 513 (513)
Q Consensus 456 h~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~aDpRr-~G~a~g~ 513 (513)
|+++.....+.+|+|.+.. +|.++|+||||| +|.|+||
T Consensus 152 h~v~~~~~~g~~~~i~~~~--------------------~g~~~g~sDpR~~~G~a~g~ 190 (190)
T 2dg5_B 152 QKVALKEAMGSTQSIMVGP--------------------DGELYGASDPRSVDDLTAGY 190 (190)
T ss_dssp CCEEECSCCCCCEEEEECT--------------------TSCEEEEECTTSTTCEEEEC
T ss_pred cEeEEecCCCeEEEEEEeC--------------------CCeEEEEECCCCCCCeeeeC
Confidence 9998765455678887653 688999999999 9999987
No 9
>2qmc_B GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_B* 2nqo_B* 3fnm_B*
Probab=100.00 E-value=4.9e-59 Score=440.35 Aligned_cols=184 Identities=36% Similarity=0.478 Sum_probs=170.8
Q ss_pred ceEEEEEcCCCCEEEEEeccCCCCCceeecCCceeEeccCCCCccCCC-CCCCCCCCCCCCCcCCCCCCCCCCCcceEEE
Q 010301 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPT-EISPDKLPPAPANFIEPNKRPLSSMTPLIIT 375 (513)
Q Consensus 297 Tth~svvD~~GnaVs~T~Si~~~FGSg~~~p~tGi~lNn~m~~Fs~~~-~~~~~~~~p~~~N~i~PgKRP~ssm~Ptiv~ 375 (513)
||||||+|++||+||+|+|||..||||+++|+|||+|||+|+||++.+ ..|.|+++++++|+|+|||||+|||||+||+
T Consensus 1 Tth~svvD~~GnaVS~T~Si~~~FGSgv~~p~tGi~LNN~m~dFs~~pg~~n~~g~~~~~~N~i~PgKRP~ssm~Ptiv~ 80 (188)
T 2qmc_B 1 ATHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEANKRPLSSMSPTIVL 80 (188)
T ss_dssp CEEEEEEETTSCEEEEEEECSSTTTTSCBCTTTCCBCCCGGGGSBSSTTCCCTTSCCCCSTTBCCTTCCCCBCCCCEEEE
T ss_pred CeEEEEECCCCCEEEEEecCCCCccCeeEcCCCceEEcCCCCCcccCCCCccccCCCCCcccccCCCCccccCCCCEEEE
Confidence 899999999999999999999999999999999999999999999755 4589999999999999999999999999999
Q ss_pred ecCceeEEeeCCCccchHHHHHHHHHHHHHcCCCHHHHhhCCccccccCCceEEeccccccCCcccCCCHHHHHHHHhcC
Q 010301 376 KDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRG 455 (513)
Q Consensus 376 ~~g~~~l~~Ga~GG~~i~~~~~qvl~~~l~~g~~l~~AI~aPR~~~~~~p~~~~~E~~~~~~~~~~~~~~~~~~~L~~~G 455 (513)
++|+++|++|+|||++|||+++|+|+|+++|||++||||++||||+|+.|+.+.+|.. +++++++++|+++|
T Consensus 81 ~~g~~~l~~Gs~GG~~i~~~~~q~l~n~ld~gm~~q~Ai~aPR~h~~~~p~~~~~E~~--------~~~~~~~~~L~~~G 152 (188)
T 2qmc_B 81 KNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLPDELRIEKF--------GMPADVKDNLTKMG 152 (188)
T ss_dssp ETTEEEEEECCCCGGGHHHHHHHHHHHHHHHCCCHHHHHHSCCCBCCSSSCCEEECTT--------SSCHHHHHHHHHHT
T ss_pred eCCcEEEEEECCCcchHHHHHHHHHHHHHccCCCHHHHhhCCEEeeccCCCeEEEecC--------CCCHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999962 48999999999999
Q ss_pred CEEEEecCCceEEEEEE--cccCCccccccccCccCcccccCCeEEEeecCCCC
Q 010301 456 HQLKAKAGGAIVQFVVQ--TLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKD 507 (513)
Q Consensus 456 h~v~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~g~aDpRr~ 507 (513)
|+++.....+.+|+|.+ +. .+|.++|+|||||+
T Consensus 153 h~v~~~~~~g~~q~I~~~~~~-------------------~~g~~~g~sDpR~~ 187 (188)
T 2qmc_B 153 YQIVTKPVMGDVNAIQVLPKT-------------------KGSVFYGSTDPRKE 187 (188)
T ss_dssp CCEEECSCCCCCCEEEEEECS-------------------SSEEEEEECCTTC-
T ss_pred CeeEEccCCeeEEEEEEeeeC-------------------CCCEEEEEeCCCCC
Confidence 99987665677899987 31 06889999999996
No 10
>2v36_B Gamma-glutamyltranspeptidase small chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_B*
Probab=100.00 E-value=9.5e-59 Score=439.12 Aligned_cols=179 Identities=37% Similarity=0.579 Sum_probs=155.8
Q ss_pred ceEEEEEcCCCCEEEEEeccCCCCCceeecCCceeEeccCCCCccCCCCCCCCCCCCCCCCcCCCCCCCCCCCcceEEEe
Q 010301 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPANFIEPNKRPLSSMTPLIITK 376 (513)
Q Consensus 297 Tth~svvD~~GnaVs~T~Si~~~FGSg~~~p~tGi~lNn~m~~Fs~~~~~~~~~~~p~~~N~i~PgKRP~ssm~Ptiv~~ 376 (513)
||||||+|++||+||+|+|||..||||+++|+|||+|||+|+||++.+ +++|+|+|||||+|||||+||++
T Consensus 1 Tth~sVvD~~GnaVS~T~Si~~~FGSgv~~p~tG~~LNN~m~dFs~~p---------g~~N~i~PGKRP~ssm~Ptiv~~ 71 (193)
T 2v36_B 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDFDAIP---------GGANEVQPNKRPLSSMTPTILFK 71 (193)
T ss_dssp CEEEEEEETTSCEEEEEEECSSTTTTSCBCTTTCCBCCCGGGGSBSSS---------SSTTBCCTTCCCCBCCCCEEEEE
T ss_pred CeEEEEECCCCCEEEEEecCCCCcCCeeEcCCCceeECCCCCCccCCC---------CCCCccCCCCcccccCCCEEEEe
Confidence 899999999999999999999999999999999999999999999753 46899999999999999999999
Q ss_pred cCceeEEeeCCCccchHHHHHHHHHHHHHcCCCHHHHhhCCccccccCCceEEeccccccCCcccCCCHHHHHHHHhcCC
Q 010301 377 DNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGH 456 (513)
Q Consensus 377 ~g~~~l~~Ga~GG~~i~~~~~qvl~~~l~~g~~l~~AI~aPR~~~~~~p~~~~~E~~~~~~~~~~~~~~~~~~~L~~~Gh 456 (513)
+|+++|++|+|||++|||+++|+|+|+++|||++||||++||||+|+ |+.+.+|. +++++++++|+++||
T Consensus 72 ~g~~~l~~Gs~GG~~i~~~~~q~l~n~ld~gm~~q~Ai~aPR~~~~~-p~~v~~E~---------~~~~~~~~~L~~~Gh 141 (193)
T 2v36_B 72 DDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEEPRIYTNS-MSSYRYED---------GVPKDVLSKLNGMGH 141 (193)
T ss_dssp TTEEEEEEECCCGGGHHHHHHHHHHHHHTSCCCHHHHHHSCCEEEEE-TTEEEECT---------TSCC----------C
T ss_pred CCCEEEEEECCCcchhHHHHHHHHHHHHccCCCHHHHhhCCEeeecC-CCeeEecC---------CCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998 99999998 699999999999999
Q ss_pred EEE-EecCCceEEEEEEcccCCccccccccCccCcccccCCeEEEeecCCCCCccccC
Q 010301 457 QLK-AKAGGAIVQFVVQTLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKDGRPAAV 513 (513)
Q Consensus 457 ~v~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~aDpRr~G~a~g~ 513 (513)
+++ .....+.+|+|.++. .+|.++|+|||||+|.|++|
T Consensus 142 ~v~~~~~~~g~~qaI~~~~-------------------~~g~~~g~sDpR~~G~a~~~ 180 (193)
T 2v36_B 142 KFGTSPVDIGNVQSISIDH-------------------ENGTFKGVADSSRNGAAIGI 180 (193)
T ss_dssp CCCSSCCCCCCCEEEEEET-------------------TTTEEEEECCTTTTCBC-CC
T ss_pred eeeeecCCCcEEEEEEEEC-------------------CCCEEEEEeCCCCCCeEEEE
Confidence 997 544456789998741 06889999999999999876
No 11
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S*
Probab=100.00 E-value=9.5e-56 Score=414.08 Aligned_cols=171 Identities=28% Similarity=0.367 Sum_probs=150.6
Q ss_pred ceEEEEEcCCCCEEEEEeccCCCCCceeecCCceeEeccCCCCccCCCCCCCCCCCCCCCCcCCCCCCCCCCCcceEEEe
Q 010301 297 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPANFIEPNKRPLSSMTPLIITK 376 (513)
Q Consensus 297 Tth~svvD~~GnaVs~T~Si~~~FGSg~~~p~tGi~lNn~m~~Fs~~~~~~~~~~~p~~~N~i~PgKRP~ssm~Ptiv~~ 376 (513)
||||||+|++||+||+|+|+|..||||+++ |||+|||+|+||+ + +++|+|+|||||+|||+|+||++
T Consensus 1 Tth~svvD~~GnaVS~T~Si~~~FGSgv~~--tGi~LNN~m~dFs-p----------~~~N~i~PgKRP~ssm~Ptiv~~ 67 (177)
T 3g9k_S 1 TTHFVIIDRDGTVVSSTNTLSNFFGTGKYT--AGFFLNNQLQNFG-S----------EGFNSYEPGKRSRTFMAPTVLKK 67 (177)
T ss_dssp CEEEEEECTTCCEEEEEEECSSTTTTSCEE--TTEECCCCCCC---------------------CCCCCCCCCCCEEEEE
T ss_pred CeEEEEECCCCCEEEEEccCCCCCCcceEe--cceEEcCcccccC-C----------CCCcccCCCCccccCCCCEEEEc
Confidence 899999999999999999999999999999 9999999999998 2 36899999999999999999999
Q ss_pred cCceeEEeeCCCccchHHHHHHHHHHHHHcCCCHHHHhhCCccccccCCceEEeccccccCCcccCCCHHHHHHHHhcCC
Q 010301 377 DNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQNPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGH 456 (513)
Q Consensus 377 ~g~~~l~~Ga~GG~~i~~~~~qvl~~~l~~g~~l~~AI~aPR~~~~~~p~~~~~E~~~~~~~~~~~~~~~~~~~L~~~Gh 456 (513)
+|+ +|++|+|||++|||+++|+|+|+++|||++||||++||||+ .|+.+.+|. +++++++++|+++||
T Consensus 68 ~g~-~l~~Gs~GG~~i~~~~~q~l~n~ld~gm~~q~Ai~aPR~~~--~~~~~~~E~---------~~~~~~~~~L~~~Gh 135 (177)
T 3g9k_S 68 DGE-TIGIGSPGGNRIPQILTPILDKYTHGKGSLQDIINEYRFTF--EKNTAYTEI---------QLSSEVKNELSRKGL 135 (177)
T ss_dssp TTE-EEEEECCCGGGHHHHHHHHHHHHHTTCSCHHHHHHSCCEEE--ETTEEEESS---------CCCHHHHHHHHTTTC
T ss_pred CCc-EEEEECCCHHHHHHHHHHHHHHHHhCCCCHHHHHhCCeeec--CCCeEEEcC---------CCCHHHHHHHHHcCC
Confidence 998 99999999999999999999999999999999999999998 689999998 799999999999999
Q ss_pred EEEEecC---CceEEEEEEcccCCccccccccCccCcccccCCeEEEeecCCCCCccc
Q 010301 457 QLKAKAG---GAIVQFVVQTLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKDGRPA 511 (513)
Q Consensus 457 ~v~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~aDpRr~G~a~ 511 (513)
+++.... .+.+|+|.++. .+|.++|+|||||+|.|.
T Consensus 136 ~v~~~~~~~~~g~~~ai~~~~-------------------~~g~l~g~sDpR~~G~a~ 174 (177)
T 3g9k_S 136 NVKKKVSPAFFGGVQALIKDE-------------------RDNVITGAGDGRRNGTWK 174 (177)
T ss_dssp EEEECCCGGGGCCCEEEEEET-------------------TTTEEEEECCGGGTCEEE
T ss_pred eeEECCCCCcceeEEEEEEEC-------------------CCCEEEEEeCCCCCCeee
Confidence 9987542 35689998752 078999999999999885
No 12
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=81.57 E-value=16 Score=36.35 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeccCCC
Q 010301 293 RDHGTSHFCIVDAERNAVSMTTTVNYA 319 (513)
Q Consensus 293 ~~~~Tth~svvD~~GnaVs~T~Si~~~ 319 (513)
..++|+..+++|.+||..+.|||-+..
T Consensus 166 ~~~dTVG~ValD~~G~iaaaTSTgG~~ 192 (310)
T 4gdv_A 166 KNLGTVGAVALDCKGNVAYATSTGGIV 192 (310)
T ss_dssp -CCCCEEEEEECTTSCEEEEEEECCST
T ss_pred cccCceeeEEEeCCCCEEEEECCCCcc
Confidence 457999999999999999999996544
No 13
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=74.90 E-value=21 Score=35.28 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeccCCC
Q 010301 293 RDHGTSHFCIVDAERNAVSMTTTVNYA 319 (513)
Q Consensus 293 ~~~~Tth~svvD~~GnaVs~T~Si~~~ 319 (513)
+.++|+-.+++|++||..+.|||-+..
T Consensus 148 ~~~dTVGaValD~~G~lAaaTSTgG~~ 174 (295)
T 1p4k_A 148 ENHNTIGMIALDAQGNLSGACTTSGMA 174 (295)
T ss_dssp SBBCCEEEEEECTTSCEEEEEEECCST
T ss_pred CCCCCEEEEEEcCCCCEEEEEccCCcc
Confidence 356999999999999999999996543
No 14
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=72.25 E-value=11 Score=33.11 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCEEEEEeccCCC
Q 010301 297 TSHFCIVDAERNAVSMTTTVNYA 319 (513)
Q Consensus 297 Tth~svvD~~GnaVs~T~Si~~~ 319 (513)
|+...++|++||..+.|+|-+..
T Consensus 1 TVGaValD~~G~lAaaTSTGG~~ 23 (141)
T 1apy_B 1 TIGMVVIHKTGHIAAGTSTNGIK 23 (141)
T ss_dssp CEEEEEECTTSCEEEEEEECCST
T ss_pred CEEEEEEeCCCCEEEEECCCCcC
Confidence 67889999999999999996544
No 15
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=44.87 E-value=8 Score=36.93 Aligned_cols=72 Identities=22% Similarity=0.400 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCccccccccc----CC-eecCCCCeeeCHHHHHHHHHHHHhCCCccccchHHHHHHHHH----HHhC
Q 010301 96 GQHIANKAEVILNDRGLRQVFAP----NG-KLLKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDV----REAG 166 (513)
Q Consensus 96 a~~l~~~~~~l~~~~~~~~~f~~----~G-~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~iA~~iv~~~----~~~G 166 (513)
.....+.+..|+++|.+|.-|.. =| .|+.-+.- =-+.+| |..+||. ++|.+|++.. ..+|
T Consensus 24 ~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPlas~kg----~ws~~l------G~gdfy~-eLavqIvEvC~~tr~~nG 92 (234)
T 3cuq_A 24 EEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKG----FWSEML------GVGDFYY-ELGVQIIEVCLALKHRNG 92 (234)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTSCTTS----HHHHHH------CHHHHHH-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcccccccCHHHHHHHHHHHHHcCCCcccCCcc----hhhhhc------CcchHHH-HHHHHHHHHHHHHHHhcC
Confidence 33344555677778877665531 12 24432210 112222 4457887 7999998876 4679
Q ss_pred CCCCHHHhccCC
Q 010301 167 GILTIEDLRSYK 178 (513)
Q Consensus 167 G~lt~~DLa~y~ 178 (513)
|+|+++||...-
T Consensus 93 Gli~L~el~~~~ 104 (234)
T 3cuq_A 93 GLITLEELHQQV 104 (234)
T ss_dssp SEEEHHHHHHHH
T ss_pred CeeEHHHHHHHH
Confidence 999999987543
No 16
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=44.86 E-value=14 Score=35.15 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=37.5
Q ss_pred CCCeeeCHHHHHHHHHHHH-h---------------CCCccccchHHHHHHHHHH----HhCCCCCHHHhccCCC
Q 010301 125 SGDKCYNVELAQSLEALAE-Q---------------GPEALYNGTVGEKLVKDVR----EAGGILTIEDLRSYKV 179 (513)
Q Consensus 125 ~Gd~l~~p~LA~TL~~ia~-~---------------G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y~~ 179 (513)
.+||=++|.+...++.+.. - |..+||. ++|-+|++... .+||+|+++||...--
T Consensus 51 k~eI~~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg~gdfy~-eLavqIvEvC~~tr~~nGGli~l~el~~~~~ 124 (233)
T 1u5t_A 51 NSELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFTVNDFYY-EVCLKVIEICRQTKDMNGGVISFQELEKVHF 124 (233)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTTHHHHHH-HHHHHHHHHHHHHTTTSSSCEEHHHHHHTTT
T ss_pred HhhcccCHHHHHHHHHHHHHcCCCCCccCCccccccCcchHHH-HHHHHHHHHHHHHHHhcCCeeEHHHHHHHHH
Confidence 3566667776555555422 1 3347887 79999999875 5799999999886543
No 17
>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding, hydrolase; 2.60A {Lupinus luteus}
Probab=42.28 E-value=22 Score=30.86 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCEEEEEeccCCC
Q 010301 297 TSHFCIVDAERNAVSMTTTVNYA 319 (513)
Q Consensus 297 Tth~svvD~~GnaVs~T~Si~~~ 319 (513)
|+...++|++||..+.|||-+..
T Consensus 1 TVGaValD~~G~iAaatSTgG~~ 23 (133)
T 2gez_B 1 TVGCVAVDSHGNLASATSTGGLV 23 (133)
T ss_dssp CEEEEEECTTCCEEEEEEECCST
T ss_pred CEEEEEEeCCCCEEEEECCCCcC
Confidence 67889999999999999996544
No 18
>1k2x_B Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia coli} SCOP: d.153.1.5 PDB: 1jn9_B* 1t3m_B 2zal_B
Probab=42.01 E-value=21 Score=31.33 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCEEEEEeccCCC
Q 010301 297 TSHFCIVDAERNAVSMTTTVNYA 319 (513)
Q Consensus 297 Tth~svvD~~GnaVs~T~Si~~~ 319 (513)
|+...++|++||..+.|+|-+..
T Consensus 1 TVGaValD~~G~iAaaTSTgG~~ 23 (143)
T 1k2x_B 1 TVGAVALDLDGNLAAATSTGGMT 23 (143)
T ss_dssp CEEEEEECTTSCEEEEEEECCCT
T ss_pred CeEEEEEeCCCCEEEEECCCCcC
Confidence 67889999999999999996544
No 19
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase, autoprot precursor, hydrolase; 1.95A {Escherichia coli} PDB: 2zak_A
Probab=38.23 E-value=27 Score=34.84 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeccCCC
Q 010301 293 RDHGTSHFCIVDAERNAVSMTTTVNYA 319 (513)
Q Consensus 293 ~~~~Tth~svvD~~GnaVs~T~Si~~~ 319 (513)
..++|+-.+++|++||..+.|||-+..
T Consensus 174 ~~~dTVGaValD~~G~lAaaTSTGG~~ 200 (320)
T 3c17_A 174 QKMGAVGAVALDLDGNLAAATSTGGMT 200 (320)
T ss_dssp TTCCCEEEEEECTTSCEEEEEEECCCT
T ss_pred CCCCCEEEEEEeCCCCEEEEEcCCCcC
Confidence 346999999999999999999996544
No 20
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase, asparaginase, hydrolase; 1.90A {Homo sapiens} PDB: 2a8i_A 2a8m_A 2a8l_A
Probab=31.12 E-value=34 Score=35.41 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=21.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeccCCCC
Q 010301 294 DHGTSHFCIVDAERNAVSMTTTVNYAF 320 (513)
Q Consensus 294 ~~~Tth~svvD~~GnaVs~T~Si~~~F 320 (513)
.+||+-.+++|++||..+.|+|-+..|
T Consensus 231 ~~dTVGaVAlD~~G~lAAaTSTGG~~~ 257 (420)
T 2a8j_A 231 TLDTVGAVVVDHEGNVAAAVSSGGLAL 257 (420)
T ss_dssp ---CEEEEEEETTCCEEEEEEECCSTT
T ss_pred CCCCEEEEEEeCCCCEEEEEcCCCCcC
Confidence 469999999999999999999976543
No 21
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=29.81 E-value=15 Score=33.28 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=16.5
Q ss_pred ccccchHHHHHHHHHH---H-----hCC-CCCHHHh
Q 010301 148 ALYNGTVGEKLVKDVR---E-----AGG-ILTIEDL 174 (513)
Q Consensus 148 ~FY~G~iA~~iv~~~~---~-----~GG-~lt~~DL 174 (513)
.||. ++|.+|++.+. + +|| +|++.||
T Consensus 11 ~f~~-ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl 45 (169)
T 1u5t_B 11 LFLD-EIAREIYEFTLSEFKDLNSDTNYMIITLVDL 45 (169)
T ss_dssp THHH-HHHHHHHHHHHTTTTTSSSCCCCCCEETTHH
T ss_pred HHHH-HHHHHHHHHHhhcchhhHHhcCceeEEHHHH
Confidence 4555 78888888877 4 467 4444444
No 22
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=28.06 E-value=19 Score=33.94 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=22.4
Q ss_pred CccccchHHHHHHHHHH----HhCCCCCHHHhcc
Q 010301 147 EALYNGTVGEKLVKDVR----EAGGILTIEDLRS 176 (513)
Q Consensus 147 ~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~ 176 (513)
..||. ++|.+|++.+. ++||+|++.||-.
T Consensus 71 ~~f~~-ELa~qi~e~c~~~~~~~GG~I~L~dl~~ 103 (218)
T 3cuq_B 71 TQYHM-QLAKQLAGILQVPLEERGGIMSLTEVYC 103 (218)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHTTSEEEHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHhCCCeEEHHHHHH
Confidence 45777 89999998864 5799888888753
No 23
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=25.04 E-value=53 Score=24.63 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHhcCCCCHHHHHH
Q 010301 56 PGEIAGLHEAWLKHGRLAWRALFQ 79 (513)
Q Consensus 56 PG~v~G~~~ah~~~G~l~w~~ll~ 79 (513)
+=+...|.+.+++||+ .|++++.
T Consensus 13 ~EE~~~L~~gV~k~G~-~W~~I~~ 35 (62)
T 1x58_A 13 KEEVNYLFHGVKTMGN-HWNSILW 35 (62)
T ss_dssp HHHHHHHHHHHHHHCS-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhH-hHHHHHH
Confidence 4567889999999999 9999875
No 24
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=24.27 E-value=51 Score=28.34 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeccC
Q 010301 294 DHGTSHFCIVDAERNAVSMTTTVN 317 (513)
Q Consensus 294 ~~~Tth~svvD~~GnaVs~T~Si~ 317 (513)
...-||+++.|..||.++..++-.
T Consensus 24 s~NNTivtiTd~~G~~~~~~SaG~ 47 (129)
T 2vqe_K 24 SYNNTIVTITDPDGNPITWSSGGV 47 (129)
T ss_dssp CSSCEEEEEECTTSCEEEECCTTT
T ss_pred cCCCEEEEEEcCCCCEEEEEeccc
Confidence 346789999999999988877644
No 25
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=22.78 E-value=70 Score=27.93 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCEEEEEeccCCCC
Q 010301 294 DHGTSHFCIVDAERNAVSMTTTVNYAF 320 (513)
Q Consensus 294 ~~~Tth~svvD~~GnaVs~T~Si~~~F 320 (513)
...-|++++.|..||.++..++-...|
T Consensus 37 s~NNTivtiTD~~G~~i~~~SaG~~Gf 63 (140)
T 3bbn_K 37 SFNNTIVTVTDVRGRVVSWASAGTCGF 63 (140)
T ss_dssp CSSCEEEEEECSSSCEEEEEETTTSSC
T ss_pred cCCCEEEEEEcCCCCEEEEEeccceeE
Confidence 346789999999999999888754433
No 26
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.68 E-value=28 Score=25.73 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCHHHhcc-CCC
Q 010301 156 EKLVKDVREAGGILTIEDLRS-YKV 179 (513)
Q Consensus 156 ~~iv~~~~~~GG~lt~~DLa~-y~~ 179 (513)
++|.+.++++||+|..+++++ |.+
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV 37 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGV 37 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCC
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCC
Confidence 678999999999999999985 444
Done!