BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010302
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 118/175 (67%), Positives = 136/175 (77%), Gaps = 3/175 (1%)
Query: 337 PPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN 396
P +E++A + S D+ I+HT+MGDIH KL+P ECPKTVENF H RN YYN
Sbjct: 3 PSKEEVMAATQAEGPKRVS--DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNG 60
Query: 397 LIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGS 456
FHR+IKGFMIQTGDP G G GG+SIWG EFEDEFH +LRHDRP+T+SMANAG NTNGS
Sbjct: 61 HTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGS 120
Query: 457 QFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTD-KNDKPYQDVKILNVTV 510
QFFIT V TPWLDNKHTVFGRV KGM+VVQ I VK + K DKPY+DV I+N+TV
Sbjct: 121 QFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 123/154 (79%)
Query: 357 PDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGD 416
P + I++TTMGDIH+ L+ +EC KTV+NF+ H N YYNN IFHRVIK FM+QTGDP GD
Sbjct: 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 417 GTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 476
GTGG+SIWG EFEDEF L H +PF VSMAN GPNTNGSQFFITTV PWLD KHTVFG
Sbjct: 65 GTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFG 124
Query: 477 RVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510
+V +G +V IEKV+TDK DKP +D+KILN+ +
Sbjct: 125 KVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 158
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V LHT +GDI ++++ E PKT ENF C + YYN IFHR IKGFM+QTGDP G G G
Sbjct: 9 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
Query: 420 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI 479
G SIWG++FEDE+ + L+H+ VSMAN GPNTNGSQFFIT P LD K+TVFG+VI
Sbjct: 69 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 128
Query: 480 KGMDVVQAIEKVK-TDKNDKPYQDVKILNVTV 510
G++ + +EK+ +K +P DV I ++T+
Sbjct: 129 DGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V LHT +GDI ++++ E PKT ENF C + YYN IFHR IKGFM+QTGDP G G G
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 420 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI 479
G SIWG++FEDE+ + L+H+ VSMAN GPNTNGSQFFIT P LD K+TVFG+VI
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122
Query: 480 KGMDVVQAIEKVK-TDKNDKPYQDVKILNVTV 510
G++ + +EK+ +K +P DV I ++T+
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 102/150 (68%)
Query: 357 PDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGD 416
P NV L T+MG I ++LY + PKT +NF R YYN FHR+IK FMIQ GDP G
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 417 GTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 476
G GG SI+G++FEDE H L+ ++MANAGP+TNGSQFF+T T WLD KHT+FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 477 RVIKGMDVVQAIEKVKTDKNDKPYQDVKIL 506
RV +G+ +V + V+T+ D+P DVKI+
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 102/150 (68%)
Query: 357 PDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGD 416
P NV L T+MG I ++LY + PKT +NF R YYN FHR+IK FMIQ GDP G
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 417 GTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 476
G GG SI+G++FEDE H L+ ++MANAGP+TNGSQFF+T T WLD KHT+FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 477 RVIKGMDVVQAIEKVKTDKNDKPYQDVKIL 506
RV +G+ +V + V+T+ D+P DVKI+
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 102/150 (68%)
Query: 357 PDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGD 416
P NV L T+MG I ++LY + PKT +NF R YYN FHR+IK FMIQ GDP G
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 417 GTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 476
G GG SI+G++FEDE H L+ ++MANAGP+TNGSQFF+T T WLD KHT+FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 477 RVIKGMDVVQAIEKVKTDKNDKPYQDVKIL 506
RV +G+ +V + V+T+ D+P DVKI+
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 95/147 (64%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
+ ++T +GD ++LY PKT NF T C +Y+N IFHRVI F+IQ GDP G G G
Sbjct: 41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 420 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI 479
G+SI+G FEDE +K L+H +SM+N GPNTN SQFFIT P LD KHT+F RV
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 480 KGMDVVQAIEKVKTDKNDKPYQDVKIL 506
K M ++ I V+T +KP D+KIL
Sbjct: 161 KNMTCIENIASVQTTATNKPIFDLKIL 187
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 101/159 (63%), Gaps = 13/159 (8%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNE----------YYNNLIFHRVIKGFM 407
D I T G I M+L+ ++ P T ENF C E Y FHR+I FM
Sbjct: 25 DISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFM 84
Query: 408 IQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATP 466
IQ GD GDGTGG+SI+G +F DE + HD PF +SMANAGPNTNGSQFFITTV P
Sbjct: 85 IQGGDFTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCP 143
Query: 467 WLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKI 505
WLD KH VFG+V++GM+VV++IEK + +N KP + V I
Sbjct: 144 WLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCI 181
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + L+ + PKTV+NF E Y N FHRVIK FMIQ GD GDGTGG+
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE K L+H P VSMANAG +TNGSQFFITTV T WLD KH VFG+V++G
Sbjct: 89 SIYGERFPDENFK-LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEG 147
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKILN 507
M+VV+ +E KTD DKP +DV I +
Sbjct: 148 MEVVRKVESTKTDSRDKPLKDVIIAD 173
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + L+ + PKTV+NF E Y N FHRVIK FMIQ GD GDGTGG+
Sbjct: 19 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 78
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE K L+H P VSMANAG +TNGSQFFITTV T WLD KH VFG+V++G
Sbjct: 79 SIYGERFPDENFK-LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEG 137
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKILN 507
M+VV+ +E KTD DKP +DV I +
Sbjct: 138 MEVVRKVESTKTDSRDKPLKDVIIAD 163
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 99/146 (67%), Gaps = 5/146 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + + L+ + PKTV+NF E Y + FHRVIK FMIQ GD GDGTGG+
Sbjct: 26 IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGK 85
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE K L+H P VSMANAG +TNGSQFFITTV T WLD KH VFG+V++G
Sbjct: 86 SIYGERFPDENFK-LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEG 144
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKILN 507
M+VV+ +E KTD DKP +DV I +
Sbjct: 145 MEVVRKVETTKTDGRDKPLKDVTIAD 170
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 99/146 (67%), Gaps = 5/146 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + + L+ + PKTV+NF E Y + FHRVIK FMIQ GD GDGTGG+
Sbjct: 26 IGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGK 85
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE K L+H P VSMANAG +TNGSQFFITTV T WLD KH VFG+V++G
Sbjct: 86 SIYGERFPDENFK-LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEG 144
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKILN 507
M+VV+ +E KTD DKP +DV I +
Sbjct: 145 MEVVRKVETTKTDGRDKPLKDVTIAD 170
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 148 bits (373), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 102/145 (70%), Gaps = 6/145 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQ 421
+G I + L+ ++ P T ENF C E+ Y + IFHRVI+ FMIQ GD DGTGG+
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +F DE + +++H +SMANAGPNTNGSQFFITT TPWLD +H VFG+V+ G
Sbjct: 85 SIYGEKFADE-NLNVKHFVG-ALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDG 142
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKIL 506
MDVV IEK KT+ +D+P + VKI+
Sbjct: 143 MDVVLRIEKTKTNSHDRPVKPVKIV 167
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 101/145 (69%), Gaps = 6/145 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQ 421
+G I + L+ ++ P T ENF C E+ Y + IFHRVI+ FMIQ GD DGTGG+
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +F DE + +++H +SMANAGPNTNGSQFFITT TPWLD H VFG+V+ G
Sbjct: 85 SIYGEKFADE-NLNVKHFVG-ALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDG 142
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKIL 506
MDVV IEK KT+ +D+P + VKI+
Sbjct: 143 MDVVLRIEKTKTNSHDRPVKPVKIV 167
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 103/159 (64%), Gaps = 11/159 (6%)
Query: 356 LPDNVILHTTMGD-----IHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFM 407
+ D V T+GD + + L+ + PKTVENF E Y IFHRVI+ FM
Sbjct: 4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFM 63
Query: 408 IQTGDPLG-DGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATP 466
IQ GD DGTGG+SI+G F+DE K ++H VSMANAGPN+NGSQFF+TT TP
Sbjct: 64 IQGGDFTNFDGTGGKSIYGTRFDDENLK-IKHFVG-AVSMANAGPNSNGSQFFVTTAPTP 121
Query: 467 WLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKI 505
WLD +H VFG+V++GMDVV+ +E KT NDKP + VKI
Sbjct: 122 WLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI 160
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 95/153 (62%), Gaps = 13/153 (8%)
Query: 367 GDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGFMIQTGD-PL 414
G I M+LY + P+T NF C +Y FHRVIK FMIQ GD
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 415 GDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTV 474
GDGTGG+SI+G F+DE ++HD PF VSMAN GPNTNGSQFFITT P L+N H V
Sbjct: 81 GDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVV 139
Query: 475 FGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 507
FG+V+ G +VV IE +KT+ ++P DV ILN
Sbjct: 140 FGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN 172
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 94/149 (63%), Gaps = 13/149 (8%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNE----------YYNNLIFHRVIKGFM 407
D I + G I M+LY + PKT ENF C E +Y + +FHRVI FM
Sbjct: 13 DISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFM 72
Query: 408 IQTGD-PLGDGTGGQSIWGREFEDEF--HKSLRHDRPFTVSMANAGPNTNGSQFFITTVA 464
IQ GD G+GTGG+SI+G F DE K+ RH +SMANAGPNTNGSQFFI T A
Sbjct: 73 IQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAA 132
Query: 465 TPWLDNKHTVFGRVIKGMDVVQAIEKVKT 493
TPWLD KH VFGRVI G+DVV+ +E++ +
Sbjct: 133 TPWLDGKHVVFGRVIDGLDVVKKVERLGS 161
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 98/151 (64%), Gaps = 4/151 (2%)
Query: 364 TTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSI 423
T GD+ +L+ +CPK +NF + YY N IFH+ IKGF+IQ GDP G G GG+SI
Sbjct: 23 TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESI 82
Query: 424 WGREFEDEFHKSLRHDRPFTVSMANAG----PNTNGSQFFITTVATPWLDNKHTVFGRVI 479
+GR F+DE + L++DR +SMA+ G PNTNGSQFFIT + P L+ ++ +FG++I
Sbjct: 83 YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLI 142
Query: 480 KGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510
G + + +E +DK+ KP ++ I ++ +
Sbjct: 143 DGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 143 bits (361), Expect = 2e-34, Method: Composition-based stats.
Identities = 76/144 (52%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G I KL+ + PKT NF C E Y FHRVI FM+Q GD G+GTGG+
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +F DE + L+H++P +SMANAGPNTNGSQFFITTV T WLD KH VFG VI G
Sbjct: 75 SIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDG 133
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M+VV+AIE + + KP ++I
Sbjct: 134 MNVVKAIE-AEGSGSGKPRSRIEI 156
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 102/163 (62%), Gaps = 13/163 (7%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGF 406
D I + G + +L+ + CPKT ENF C E +Y + +FHRV+K F
Sbjct: 15 DIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDF 74
Query: 407 MIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVAT 465
M+Q GD G+G GG+SI+G FEDE +++H++ F +SMAN G +TNGSQFFITT T
Sbjct: 75 MVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPT 133
Query: 466 PWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 508
P LD H VFG+VI G +VV+ IE KTD KP+ +V+IL+
Sbjct: 134 PHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 176
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 97/157 (61%), Gaps = 13/157 (8%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGFMIQTGD-P 413
+G I +L+ + CPKT +NF C E Y FHRV+K FMIQ GD
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 414 LGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHT 473
G+G GG+SI+G F+DE + L+HDR F +SMAN G +TNGSQFFITT P LD H
Sbjct: 93 EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 474 VFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510
VFG VI G +V++ IE +KTD +PY DV++++ V
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 188
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V LHT GD++++L+ + PKT ENF C+ YY+ IFHR I+ F+IQ GDP G GTG
Sbjct: 22 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 420 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI 479
G+S WG+ F+DEF +L H +SMAN+GPN+N SQFFIT + +LD KHT+FGRV+
Sbjct: 82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 480 KGMDVVQAIEKVKTD-KNDKPYQDVKILNVTV 510
G DV+ A+E V++D K D+P ++++I TV
Sbjct: 142 GGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 102/163 (62%), Gaps = 13/163 (7%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGF 406
D I + G + +L+ + CPKT ENF C E +Y + +FHRV+K F
Sbjct: 15 DIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDF 74
Query: 407 MIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVAT 465
M+Q GD G+G GG+SI+G FEDE +++H++ F +SMAN G +TNGSQFFITT T
Sbjct: 75 MVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPT 133
Query: 466 PWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 508
P LD H VFG+VI G +VV+ IE KTD KP+ +V+IL+
Sbjct: 134 PHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 176
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 101/163 (61%), Gaps = 13/163 (7%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGF 406
D I + G + +L+ + CPKT ENF C E +Y + +FHRV+K F
Sbjct: 32 DIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDF 91
Query: 407 MIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVAT 465
M+Q GD G+G GG+SI+G FEDE +++H+ F +SMAN G +TNGSQFFITT T
Sbjct: 92 MVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPT 150
Query: 466 PWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 508
P LD H VFG+VI G +VV+ IE KTD KP+ +V+IL+
Sbjct: 151 PHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 193
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 98/154 (63%), Gaps = 5/154 (3%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V+L TT GDI ++L+ +E PK NF C YY+N IFHRV+ GF++Q GDP G G+G
Sbjct: 27 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG 86
Query: 420 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI 479
G+SI+G F+DEFH LR +R V+MANAG + NGSQFF T L+NKHT+FG+V
Sbjct: 87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT 146
Query: 480 KGMDVVQA---IEKVKTDKNDKPYQDVKILNVTV 510
D V + +V D +++P+ KI + V
Sbjct: 147 G--DTVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 96/143 (67%), Gaps = 11/143 (7%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHC---------RNEYYNNLIFHRVIKGFMI 408
D I ++ G I +L+ + P+T ENF C +N +Y N IFHR+I FM
Sbjct: 9 DISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMC 68
Query: 409 QTGDPL-GDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPW 467
Q GD G+G+GG+SI+GR F DE + +++HD+P +SMANAGPNTN SQFFIT V PW
Sbjct: 69 QGGDITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPW 127
Query: 468 LDNKHTVFGRVIKGMDVVQAIEK 490
LD KH VFG+VI+GM+VV+ +EK
Sbjct: 128 LDGKHVVFGKVIEGMNVVREMEK 150
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 95/144 (65%), Gaps = 5/144 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCR---NEYYNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G I + L+ + PKT NF + E Y FHRVI FMIQ GD GDGTGG+
Sbjct: 20 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +F DE K L+H +SMANAG +TNGSQFFITTV TPWLD +H VFG++++G
Sbjct: 80 SIYGEKFADENFK-LKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEG 138
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
MDVV+ IE+ + D+P QDV I
Sbjct: 139 MDVVRKIEQTEKLPGDRPKQDVII 162
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/132 (54%), Positives = 87/132 (65%), Gaps = 5/132 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + KLY + PKT ENF C E Y FHRVI FM+Q GD G+GTGG+
Sbjct: 15 IGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +F DE K HDRP +SMANAGPNTNGSQFFITTV PWLD KH VFG V+ G
Sbjct: 75 SIYGGKFPDENFKK-HHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDG 133
Query: 482 MDVVQAIEKVKT 493
D+V+ +E + +
Sbjct: 134 YDIVKKVESLGS 145
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 99/167 (59%), Gaps = 13/167 (7%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNE----------YYNNLIFHRVIKGFM 407
D I G I M+LY + PKT NF C E ++ FHR+I FM
Sbjct: 9 DITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFM 68
Query: 408 IQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATP 466
IQ GD G+GTGG+SI+G +F DE K +H P +SMANAGPNTNGSQFF+ TV T
Sbjct: 69 IQGGDFTRGNGTGGESIYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTE 127
Query: 467 WLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPKS 513
WLD KH VFGRV++G+DVV+A+E ++ KP +D I + K+
Sbjct: 128 WLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQLKA 173
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 355 SLPDNVILHTTMGD-----IHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGF 406
S+ D V +GD I + L+ PKTVENF E Y IFHRVIK F
Sbjct: 5 SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDF 64
Query: 407 MIQTGDPLG-DGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVAT 465
MIQ GD DGTGG SI+G F DE K L+H VSMANAGP+TNGSQFFIT
Sbjct: 65 MIQGGDFTARDGTGGMSIYGETFPDENFK-LKHYGIGWVSMANAGPDTNGSQFFITLTKP 123
Query: 466 PWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 507
WLD KH VFG+V+ GM VV +IE TD +D+P D I+N
Sbjct: 124 TWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVN 165
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 91/146 (62%), Gaps = 5/146 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G I + L+ + PKTVENF E Y FHRVIK FMIQ GD GDGTGG
Sbjct: 29 VGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGV 88
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE K L+H VSMANAGP+TNGSQFFIT WLD KH VFG+VI G
Sbjct: 89 SIYGETFPDENFK-LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDG 147
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKILN 507
M VV +IE TD +D+P + I+N
Sbjct: 148 MTVVHSIELQATDGHDRPLTNCSIIN 173
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 95/143 (66%), Gaps = 11/143 (7%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHC---------RNEYYNNLIFHRVIKGFMI 408
D I ++ G I +L+ + P+T ENF C +N +Y N IFHR+I FM
Sbjct: 9 DISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMC 68
Query: 409 QTGDPL-GDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPW 467
Q GD G+G+GG+SI+GR F DE + +++HD+P +SMANAGPNTN SQF IT V PW
Sbjct: 69 QGGDITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPW 127
Query: 468 LDNKHTVFGRVIKGMDVVQAIEK 490
LD KH VFG+VI+GM+VV+ +EK
Sbjct: 128 LDGKHVVFGKVIEGMNVVREMEK 150
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 95/147 (64%), Gaps = 16/147 (10%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGFMIQTGD-P 413
+G I ++L+ + PKT ENF C E ++ FHR+IK FMIQ GD
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 414 LGDGTGGQSIWGREFEDE-FHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKH 472
+GTGG+SI+G +FEDE FH +HD+ +SMANAG NTNGSQFFITTV TP LD KH
Sbjct: 89 NQNGTGGESIYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKH 146
Query: 473 TVFGRVIKGMDVVQAIEKVKTDKNDKP 499
VFG+VIKGM V + +E V+ K +KP
Sbjct: 147 VVFGQVIKGMGVAKILENVEV-KGEKP 172
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 134 bits (337), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 134 bits (336), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 134 bits (336), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 134 bits (336), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 135 MNIVEAMERFGS-RNGKTSKKITI 157
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 92/139 (66%), Gaps = 7/139 (5%)
Query: 367 GDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPL-GDGTGGQS 422
G I M+L + P+T ENF C E Y+N FHRVI FM Q GD + GDGTGG+S
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 423 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGM 482
I+GR+F+DE + LRH+ +SMAN+GPNTNGSQFFI T WLD KH VFGRV+ G
Sbjct: 85 IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQ 143
Query: 483 DVVQAIEKV--KTDKNDKP 499
+VV+ +E V K+ K +P
Sbjct: 144 NVVKKMESVGSKSGKVKEP 162
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 133 bits (334), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P ++MANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 132 bits (333), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG V +G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEG 134
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 135 MNIVEAMERFGS-RNGKTSKKITI 157
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 132 bits (333), Expect = 4e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FH++I GFM Q GD +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 366 MGDIHMKLYPEECPKTVENF---TTHCRNEYYNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF +T + Y FHR+I GFM Q GD +GTGG+
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 96 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 154
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKILNV 508
M++V+A+E+ + +N K + + I +
Sbjct: 155 MNIVEAMERFGS-RNGKTSKKITIADC 180
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 132 bits (332), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGK 75
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+++ + +N K + + I
Sbjct: 135 MNIVEAMKRFGS-RNGKTSKKITI 157
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 132 bits (331), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD H VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 132 bits (331), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 21 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 80
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD H VFG+V +G
Sbjct: 81 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEG 139
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 140 MNIVEAMERFGS-RNGKTSKKITI 162
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 132 bits (331), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q G+ +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 132 bits (331), Expect = 6e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q GD +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD H VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 366 MGDIHMKLYPEECPKTVENF---TTHCRNEYYNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF +T + Y FHR+I GFM Q GD +GTGG+
Sbjct: 25 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 84
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 85 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 143
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKILNV 508
M++V+A+E+ + +N K + + I +
Sbjct: 144 MNIVEAMERFGS-RNGKTSKKITIADC 169
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 132 bits (331), Expect = 6e-31, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GFM Q G+ +GTGG+
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +SMANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 77 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
M++V+A+E+ + +N K + + I
Sbjct: 136 MNIVEAMERFGS-RNGKTSKKITI 158
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 97/166 (58%), Gaps = 20/166 (12%)
Query: 362 LHTTMGDIHMKLYPEECPKTVENFTTHCRNE---------------YYNNLIFHRVIKGF 406
LHT GDI + L+ PKTV NF + +Y+ +FHRVI+GF
Sbjct: 28 LHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF 87
Query: 407 MIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATP 466
MIQ GDP G+ G +F DEFH L+ D+P+ ++MANAGP TNGSQFFIT TP
Sbjct: 88 MIQGGDPT---GTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTP 144
Query: 467 WLDNKHTVFGRVI--KGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510
L+ +HT+FG VI + VV+AI K TD ND+P V I ++T+
Sbjct: 145 HLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 93/143 (65%), Gaps = 6/143 (4%)
Query: 367 GDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQS 422
G I KLY E PKT +NF ++ Y + IFHRVI FM+Q GD +GTGG+S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 423 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGM 482
I+G +F DE + ++H +P +SMANAG NTNGSQFFITTV T WLD KH VFG VI+G+
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 135
Query: 483 DVVQAIEKVKTDKNDKPYQDVKI 505
D+V+ +E K + K +KI
Sbjct: 136 DIVRKVEG-KGSASGKTNATIKI 157
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 93/143 (65%), Gaps = 6/143 (4%)
Query: 367 GDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQS 422
G I KLY E PKT +NF ++ Y + IFHRVI FM+Q GD +GTGG+S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 423 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGM 482
I+G +F DE + ++H +P +SMANAG NTNGSQFFITTV T WLD KH VFG VI+G+
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 483 DVVQAIEKVKTDKNDKPYQDVKI 505
D+V+ +E K + K +KI
Sbjct: 137 DIVRKVEG-KGSASGKTNATIKI 158
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQ 421
+G + ++L + PKT ENF C E Y FHRVI FM Q GD +GTGG+
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE + +L+H P +SMANAGPNTNGSQFFI T+ T WLD KH VFG VI+G
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135
Query: 482 MDVVQAIE 489
MDVV+ IE
Sbjct: 136 MDVVKKIE 143
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQ 421
+G + ++L + PKT ENF C E Y FHRVI FM Q GD +GTGG+
Sbjct: 18 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 77
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE + +L+H P +SMANAGPNTNGSQFFI T+ T WLD KH VFG VI+G
Sbjct: 78 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 136
Query: 482 MDVVQAIE 489
MDVV+ IE
Sbjct: 137 MDVVKKIE 144
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQ 421
+G + ++L + PKT ENF C E Y FHRVI FM Q GD +GTGG+
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE + +L+H P +SMANAGPNTNGSQFFI T+ T WLD KH VFG VI+G
Sbjct: 76 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 134
Query: 482 MDVVQAIE 489
MDVV+ IE
Sbjct: 135 MDVVKKIE 142
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQ 421
+G + ++L + PKT ENF C E Y FHRVI FM Q GD +GTGG+
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G F DE + +L+H P +SMANAGPNTNGSQFFI T+ T WLD KH VFG VI+G
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135
Query: 482 MDVVQAIE 489
MDVV+ IE
Sbjct: 136 MDVVKKIE 143
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 10/149 (6%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDPL-GD 416
+G + ++L+ + PKT ENF C E+ Y FHRVIK FMIQ GD + GD
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 417 GTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 476
GTG SI+ F DE K LRH P +SMAN+GP+TNG QFFIT WLD KH VFG
Sbjct: 84 GTGVASIYRGPFADENFK-LRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 477 RVIKGMDVVQAIEKVKTDKNDKPYQDVKI 505
++I G+ V++ IE V T N+KP V I
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKPKLPVVI 171
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 5/134 (3%)
Query: 365 TMGDIHMKLYPEECPKTVENFTTHC---RNEYYNNLIFHRVIKGFMIQTGDPLG-DGTGG 420
++G I MKL + PKT +NF T C + E Y FHR+I GFM+Q GD +GTGG
Sbjct: 40 SLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGG 99
Query: 421 QSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIK 480
+SI+G +F DE + L+H + +SMAN G +TNGSQFFIT T WLD KH VFG V++
Sbjct: 100 RSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVE 158
Query: 481 GMDVVQAIEKVKTD 494
GMDVV I K ++
Sbjct: 159 GMDVVHKIAKYGSE 172
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 87/136 (63%), Gaps = 7/136 (5%)
Query: 364 TTMGDIHMKLYPEECPKTVENFTTHCR---NEYYNNLIFHRVIKGFMIQTGD-PLGDGTG 419
T +G I L+ ++ PKT +NF C+ E Y FHR+I FMIQ GD G+GTG
Sbjct: 19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTG 78
Query: 420 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI 479
G+SI+G +F DE + S +HD+ +SMANAGPNTNGSQFFITT T WLD KH VFG V
Sbjct: 79 GRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVA 137
Query: 480 --KGMDVVQAIEKVKT 493
K VV+ IE + +
Sbjct: 138 DEKSYSVVKEIEALGS 153
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 124 bits (311), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/144 (45%), Positives = 90/144 (62%), Gaps = 6/144 (4%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGD-PLGDGTGGQ 421
+G + +L+ ++ PKT ENF E Y FHR+I GF Q GD +GTGG+
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGK 75
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + L+H P +S ANAGPNTNGSQFFI T T WLD KH VFG+V +G
Sbjct: 76 SIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 482 MDVVQAIEKVKTDKNDKPYQDVKI 505
++V+A E+ + +N K + + I
Sbjct: 135 XNIVEAXERFGS-RNGKTSKKITI 157
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Query: 367 GDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQS 422
G I M L + P T ENF C +E + FHR+I FM Q GD +GTGG+S
Sbjct: 26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85
Query: 423 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGM 482
I+G++F+DE + L+H P +SMAN+GPNTNGSQFF+T T WLD KH VFG V +G+
Sbjct: 86 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 144
Query: 483 DVVQAIEKVKTDKNDKPYQDVKILNV 508
DV++ IE + K+ KP Q V I +
Sbjct: 145 DVLRQIE-AQGSKDGKPKQKVIIADC 169
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Query: 367 GDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQS 422
G I M L + P T ENF C +E + FHR+I FM Q GD +GTGG+S
Sbjct: 18 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 77
Query: 423 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGM 482
I+G++F+DE + L+H P +SMAN+GPNTNGSQFF+T T WLD KH VFG V +G+
Sbjct: 78 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 136
Query: 483 DVVQAIEKVKTDKNDKPYQDVKILNV 508
DV++ IE + K+ KP Q V I +
Sbjct: 137 DVLRQIE-AQGSKDGKPKQKVIIADC 161
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 85/137 (62%), Gaps = 12/137 (8%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDPLG-D 416
+G +L+ PKT ENF C EY Y N IFHRVIK FMIQ GD + +
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 417 GTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 476
G+G SI+G +F+DE + ++HD+ +SMAN+GPNTNG QFFITT WLD K+ VFG
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191
Query: 477 RVIKG--MDVVQAIEKV 491
R+I + +++ IE V
Sbjct: 192 RIIDNDSLLLLKKIENV 208
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 6/152 (3%)
Query: 361 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-D 416
I + G I L + P T ENF C +E + FHR+I F Q GD +
Sbjct: 21 IGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHN 80
Query: 417 GTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFG 476
GTGG+SI+G++F+DE + L+H P +S AN+GPNTNGSQFF+T T WLD KH VFG
Sbjct: 81 GTGGKSIYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFG 139
Query: 477 RVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 508
V +G+DV++ IE + K+ KP Q V I +
Sbjct: 140 EVTEGLDVLRQIE-AQGSKDGKPKQKVIIADC 170
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 112 bits (280), Expect = 4e-25, Method: Composition-based stats.
Identities = 65/134 (48%), Positives = 79/134 (58%), Gaps = 5/134 (3%)
Query: 366 MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDPLG-DGTGGQ 421
+G I M+L+ P+T ENF C E + N IFHRVI F+ Q GD DGTGGQ
Sbjct: 20 LGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKG 481
SI+G +FEDE + ++H P +SMAN G NTN SQF IT LD KH VFG V G
Sbjct: 80 SIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDG 138
Query: 482 MDVVQAIEKVKTDK 495
MD V+ IE + K
Sbjct: 139 MDTVKKIESFGSPK 152
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 16/135 (11%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V+LHT++GD+ ++L+ ECP NF C YY N IFHRV+K F++Q GDP G G G
Sbjct: 24 VVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 420 GQ--SIWGREFEDEFHKSLRHDRPFTVSMANAGPN--------------TNGSQFFITTV 463
G + G+ F+ E H L+ V +AN G + TNG+QFFIT
Sbjct: 84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLA 143
Query: 464 ATPWLDNKHTVFGRV 478
L+N +T+FG+V
Sbjct: 144 RADVLNNAYTLFGKV 158
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 12/142 (8%)
Query: 364 TTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTG-----DPLGDGT 418
TT G ++++L+ + P+ ++F C +Y+++ IFHR I+ FMIQ G P
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 419 GGQSI-------WGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNK 471
QS G FEDEF L H +SMAN G ++N S+FFIT + L+NK
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 472 HTVFGRVIKGMDVVQAIEKVKT 493
HT+FGRV+ G+DV++ EK++T
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 18/167 (10%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V HT GDI +K + ++ P+TV+NF +CR +YNN IFHRVI GFMIQ G G G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG---GFEPG 58
Query: 420 GQSIWGRE-FEDEFHKSLRHDRPFTVSMA-NAGPNTNGSQFFITTVATPWLDNK------ 471
+ +E ++E + L++ R T++MA P++ +QFFI V +L+
Sbjct: 59 MKQKATKEPIKNEANNGLKNTRG-TLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQG 117
Query: 472 --HTVFGRVIKGMDVVQAIEKVKTDKN----DKPYQDVKILNVTVPK 512
+ VF V+ GMDVV I+ V T ++ D P +DV I +VTV +
Sbjct: 118 WGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 18/167 (10%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V HT GDI +K + ++ P+TV+NF +CR +YNN IFHRVI GFMIQ G G G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG---GFEPG 58
Query: 420 GQSIWGRE-FEDEFHKSLRHDRPFTVSMA-NAGPNTNGSQFFITTVATPWLDNK------ 471
+ +E ++E + L++ R T++MA P++ +QFFI V +L+
Sbjct: 59 MKQKATKEPIKNEANNGLKNTRG-TLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQG 117
Query: 472 --HTVFGRVIKGMDVVQAIEKVKTDKN----DKPYQDVKILNVTVPK 512
+ VF V+ GMD V I+ V T ++ D P +DV I +VTV +
Sbjct: 118 WGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 21/166 (12%)
Query: 359 NVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGT 418
+V+L T+ G+I ++L ++ P +V+NF + + +YNN FHRVI GFMIQ G G
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ-----GGGF 60
Query: 419 GGQSIWGR---EFEDEFHKSLRHDRPFTVSMA-NAGPNTNGSQFFITTVATPWLDN---- 470
Q + ++E LR+ R T++MA A ++ SQFFI +LD+
Sbjct: 61 TEQMQQKKPNPPIKNEADNGLRNTRG-TIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 471 -KHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVK-----ILNVTV 510
+ VFG+V+KGMDV I +V T + PYQ+V IL+ TV
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPT-HDVGPYQNVPSKPVVILSATV 164
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 16/154 (10%)
Query: 359 NVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGT 418
+V+L T+ G+I ++L ++ P +V+NF + + +YNN FHRVI GFMIQ G G
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ-----GGGF 60
Query: 419 GGQSIWGR---EFEDEFHKSLRHDRPFTVSMA-NAGPNTNGSQFFITTVATPWLDN---- 470
Q + ++E LR+ R T++MA A ++ SQFFI +LD+
Sbjct: 61 TEQMQQKKPNPPIKNEADNGLRNTRG-TIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 471 -KHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDV 503
+ VFG+V+KGMDV I +V T + PYQ+V
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPT-HDVGPYQNV 152
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 18/165 (10%)
Query: 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
V LHT G I ++L + PKTVENF + + +Y+ IFHRVI GFMIQ G G G
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGG---GFEPG 62
Query: 420 -GQSIWGREFEDEFHKSLRHDRPFTVSMANAG-PNTNGSQFFITTVATPWLDNK------ 471
Q +E + L++D +T++MA P++ +QFFI +L++
Sbjct: 63 LKQKPTDAPIANEANNGLKNDT-YTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQG 121
Query: 472 --HTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKILNVTV 510
+ VFG+V++G D+V I+ VKT D P DV I V
Sbjct: 122 WGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV 166
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 359 NVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGT 418
++ L T G I +KL+ ++ P+T NF + ++ +Y+ IFHRVI GFMIQ G G
Sbjct: 1 SIKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGG---GFEP 57
Query: 419 GGQSIWGRE-FEDEFHKSLRHDRPFTVSMANA-GPNTNGSQFFITTVATPWLDN------ 470
G + R ++E + L ++ +T++MA P++ +QFFI +LD+
Sbjct: 58 GMKQKSTRAPIKNEANNGLS-NKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAH 116
Query: 471 --KHTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKI 505
+ VFG V++G DVV I+ V T D P DV I
Sbjct: 117 GWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 153 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 211 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 151 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 209 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 135 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 193 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 24/170 (14%)
Query: 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFV 65
DG S S+DK+VK++ N + L+ L +V V + D + + SD + V
Sbjct: 232 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT--V 286
Query: 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 125
+++ + L H V + ++P T+ SA D ++ W+
Sbjct: 287 KLWNRNGQLLQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWN------------ 331
Query: 126 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175
++ +L + ++V + SPDG+ + S D+ ++ W R G+L
Sbjct: 332 ---RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNGQL 377
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 26/171 (15%)
Query: 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFV 65
DG S S+DK+VK++ N + L+ L +V V D + + SD + V
Sbjct: 27 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT--V 81
Query: 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 125
+++ + L H V+ + ++P T+ SA D ++ W+
Sbjct: 82 KLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR----------- 127
Query: 126 FRLKSDTNLFEILKS-KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175
+ L + L ++V + SPDG+ + S D+ ++ W R G+L
Sbjct: 128 -----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNGQL 172
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 26/171 (15%)
Query: 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFV 65
DG S S+DK+VK++ N + L+ L +V V D + + SD + V
Sbjct: 396 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT--V 450
Query: 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 125
+++ + L H V+ + ++P T+ SA D ++ W+
Sbjct: 451 KLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR----------- 496
Query: 126 FRLKSDTNLFEILKS-KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175
+ L + L ++V + SPDG+ + S D+ ++ W R G+L
Sbjct: 497 -----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK-LWNRNGQL 541
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 26/171 (15%)
Query: 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFV 65
DG S S+DK+VK++ N + L+ L +V V D + + SD + V
Sbjct: 150 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT--V 204
Query: 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 125
+++ + L H V+ + ++P T+ SA D ++ W+
Sbjct: 205 KLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR----------- 250
Query: 126 FRLKSDTNLFEILKS-KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175
+ L + L ++V+ + PDG+ + S D+ ++ W R G+L
Sbjct: 251 -----NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK-LWNRNGQL 295
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS- 140
+ H V+ + ++P T+ SA D ++ W+ + L + L
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----------------NGQLLQTLTGH 56
Query: 141 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175
++V + SPDG+ + S D+ ++ W R G+L
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVK-LWNRNGQL 90
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 26/171 (15%)
Query: 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFV 65
DG S S+DK+VK++ N + + L +V V D + + SD + V
Sbjct: 314 DGQTIASASDDKTVKLW---NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT--V 368
Query: 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 125
+++ + L H V+ + ++P T+ SA D ++ W+
Sbjct: 369 KLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR----------- 414
Query: 126 FRLKSDTNLFEILKS-KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175
+ L + L ++V + SPD + + S D+ ++ W R G+L
Sbjct: 415 -----NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK-LWNRNGQL 459
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 135 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 193 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 146 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 204 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 129 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 187 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 128 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 186 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 130 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 188 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 132 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 190 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 129 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 187 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 125 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 183 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 135 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 193 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 134 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 192 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 132 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 190 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 132 ESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 190 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 40/152 (26%)
Query: 55 LAISDRNSSFVH--------IYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK 106
LA S+ ++FV ++D R S + + + + H V +RY P D S D
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMR--SGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261
Query: 107 GI-----------IEYWSPHTLQFPESEVSFRLKS----------DTNLFEILKS----- 140
+ +S ++ F S V F L N++++LK
Sbjct: 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 141 ----KTTVSAIEVSPDGKQFSITSPDRRIRVF 168
+ VS + VSPDG F S D +RV+
Sbjct: 322 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 132 ESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 190 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNS 62
S D L S S+DK++KI+DV + + ++ G +V+ + ++ L +S
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122
V I+D + + L + H PV + +N ++S+ G+ W + Q ++
Sbjct: 132 ESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179
L D N VS ++ SP+GK + D ++++ + GK + Y
Sbjct: 190 -----LIDDDN--------PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 94 NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153
+ V+ S D + I + TLQ F+ ++ L +I + V S D
Sbjct: 623 DAVYHACFSQDGQRIASCGADKTLQV------FKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLE 184
+ S D++++++ TGKL YDE E
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSE 707
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 94 NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153
+ V+ S D + I + TLQ F+ ++ L +I + V S D
Sbjct: 616 DAVYHACFSQDGQRIASCGADKTLQV------FKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLE 184
+ S D++++++ TGKL YDE E
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSE 700
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 94 NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153
+ V+ S D + I + TLQ F+ ++ L EI + V S D
Sbjct: 622 DAVYHACFSEDGQRIASCGADKTLQV------FKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLE 184
+ + S D++++++ TG+L YDE E
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSE 706
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 378 CPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG 419
P T NF +Y+ + R GF++QTGDP G G
Sbjct: 199 APVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEG 239
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 28/118 (23%)
Query: 84 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES---------EVSF-------- 126
H PV + ++PVF ++SA + I+ W T F + ++SF
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 127 RLKSDTNL-------FEILKS----KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 173
+D + FE +++ VS++ + P+G S D+ I+++ +TG
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 44/191 (23%)
Query: 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCR--------------------NEYYNNL 397
D V+ + +G + +KL+ + P VENF N Y
Sbjct: 20 DIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGC 79
Query: 398 IFHRVIKGFMIQTGDPLG-DGTGGQSIWGRE-----FEDEFH----KSLRHDRPFTVSMA 447
FH V+ I +GD +G+ +++ E F D F+ K L P+T
Sbjct: 80 KFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYT---D 136
Query: 448 NAGPNTNGSQFFIT------TVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQ 501
+G S F IT + LD V G+V G+DV+ I + KPY
Sbjct: 137 ESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMI-----KPYA 191
Query: 502 DVKILNVTVPK 512
K ++ K
Sbjct: 192 GRKYPTFSIGK 202
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 144 VSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180
+++++ PDG++F S D R+F RTG +VY+
Sbjct: 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 70 ARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIE 110
A A N P I +M P++ ++ NPVFD + + G+ E
Sbjct: 150 AVASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAE 190
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 70 ARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIE 110
A A N P I +M P++ ++ NPVFD + + G+ E
Sbjct: 135 AVASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAE 175
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 70 ARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIE 110
A A N P I +M P++ ++ NPVFD + + G+ E
Sbjct: 354 AVASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAE 394
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 18/185 (9%)
Query: 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN 61
+ S G C S +V+I+D +L +P G V+ + + K A+ +
Sbjct: 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 125
Query: 62 SSFVHIYD-ARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 120
F H++ SN L + M V P F + +DD + + P
Sbjct: 126 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP-FRIISGSDDNTVAIFEGP------ 178
Query: 121 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY- 179
F+ KS + V ++ +PDG F+ T D I ++ G V+
Sbjct: 179 ----PFKFKS-----TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 229
Query: 180 DESLE 184
D+SL+
Sbjct: 230 DDSLK 234
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS 62
++ DG S S DK+++++DV + F+ + + D KA + IS
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQF 119
+ ++ + L+ + V+V+ D T+ISA + +++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---- 184
Query: 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVF 168
F++++D + + ++ + SPDG + D I ++
Sbjct: 185 -----QFQIEAD-----FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 134 LFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 181
L E+L K++ S I + DG +F ++ PD R + R K + Y++
Sbjct: 71 LLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEK 118
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS 62
++ DG S S DK+++++DV + F+ + + D KA + IS
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQF 119
+ ++ + L+ + V+V+ D T+ISA + +++ W+ +
Sbjct: 123 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---- 178
Query: 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVF 168
F++++D + + ++ + SPDG + D I ++
Sbjct: 179 -----QFQIEAD-----FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|2PV7|A Chain A, Crystal Structure Of Chorismate Mutase PREPHENATE
DEHYDROGENASE (Tyra) (1574749) From Haemophilus
Influenzae Rd At 2.00 A Resolution
pdb|2PV7|B Chain B, Crystal Structure Of Chorismate Mutase PREPHENATE
DEHYDROGENASE (Tyra) (1574749) From Haemophilus
Influenzae Rd At 2.00 A Resolution
Length = 298
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 194 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVS 253
+P+YRLE GR A + E+ ++ I D+S N + TL
Sbjct: 206 SPIYRLELAXIGRLFAQDAEL-------YADIIXDKSENLAVIETL---------KQTYD 249
Query: 254 RILGKVENNDR------FLRIALYQGDRSSKKVRKIPAAAANANESKE 295
L ENNDR F ++ + GD S + +++ AN+ K+
Sbjct: 250 EALTFFENNDRQGFIDAFHKVRDWFGDYSEQFLKESRQLLQQANDLKQ 297
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS 62
++ DG S S DK+++++DV + F+ + + D KA + IS
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQF 119
+ ++ + L+ + V+V+ D T+ISA + +++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---- 184
Query: 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVF 168
F++++D + + ++ + SPDG + D I ++
Sbjct: 185 -----QFQIEAD-----FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS 62
++ DG S S DK+++++DV + F+ + + D KA + IS
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQF 119
+ ++ + L+ + V+V+ D T+ISA + +++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---- 184
Query: 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVF 168
F++++D + + ++ + SPDG + D I ++
Sbjct: 185 -----QFQIEAD-----FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1YBZ|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu-1581948- 001
Length = 91
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 116 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR-RIRVFWFRTGK 174
TL+ E+ K D + +LK + + A + K+ ++ DR R R G+
Sbjct: 18 TLKLLRKEID---KIDNQIISLLKKRLEI-AQAIGKIKKELNLPIEDRKREEEVLRRAGE 73
Query: 175 LRRVYDESLEVAQDLQR 191
R ++++ LEV++D+QR
Sbjct: 74 FREIFEKILEVSKDVQR 90
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS 62
++ DG S S DK+++++DV + F+ + + D KA + IS
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQF 119
+ ++ + L+ + V+V+ D T+ISA + +++ W+ +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---- 184
Query: 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVF 168
F++++D + + ++ + SPDG + D I ++
Sbjct: 185 -----QFQIEAD-----FIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 84 HMGPVKVMRYNPVFDTVISADDKGIIEYW 112
H GP+ V+ +N ++SA D G + W
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDV 51
S++ ++C I NDK +K D+VN D+ +++ + G +Y GDV
Sbjct: 74 SINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWY--GDTSRMYYVGDV 119
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDV 51
S++ ++C I NDK +K D+VN D+ +++ + G +Y GDV
Sbjct: 74 SINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWY--GDTSRMYYVGDV 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,589,134
Number of Sequences: 62578
Number of extensions: 671995
Number of successful extensions: 1873
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 153
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)