Query 010302
Match_columns 513
No_of_seqs 567 out of 4408
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 22:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0882 Cyclophilin-related pe 100.0 7.4E-99 2E-103 703.6 32.4 497 1-510 59-557 (558)
2 KOG0881 Cyclophilin type pepti 100.0 1.1E-51 2.4E-56 319.1 10.5 157 355-511 7-163 (164)
3 cd01928 Cyclophilin_PPIL3_like 100.0 4.3E-46 9.3E-51 320.7 18.8 153 358-510 1-153 (153)
4 cd01923 cyclophilin_RING cyclo 100.0 2E-45 4.4E-50 319.0 19.0 154 359-512 1-154 (159)
5 cd01927 cyclophilin_WD40 cyclo 100.0 1.8E-45 3.9E-50 315.4 17.4 148 361-508 1-148 (148)
6 COG0652 PpiB Peptidyl-prolyl c 100.0 2.3E-45 4.9E-50 309.5 16.8 149 360-512 2-158 (158)
7 KOG0546 HSP90 co-chaperone CPR 100.0 3.2E-46 7E-51 344.6 12.2 148 364-512 20-179 (372)
8 KOG0884 Similar to cyclophilin 100.0 1.1E-45 2.5E-50 283.9 12.4 154 358-511 1-155 (161)
9 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.6E-45 3.5E-50 309.5 14.4 145 364-509 51-200 (217)
10 KOG0883 Cyclophilin type, U bo 100.0 8.5E-46 1.8E-50 340.3 13.0 158 354-511 274-431 (518)
11 cd01922 cyclophilin_SpCYP2_lik 100.0 2.4E-44 5.2E-49 307.3 16.8 146 361-507 1-146 (146)
12 cd01921 cyclophilin_RRM cyclop 100.0 1E-43 2.2E-48 311.0 18.2 152 361-512 1-160 (166)
13 cd01925 cyclophilin_CeCYP16-li 100.0 1.4E-42 3.1E-47 304.6 19.7 158 355-512 3-161 (171)
14 KOG0879 U-snRNP-associated cyc 100.0 5E-43 1.1E-47 274.4 9.8 145 364-509 22-175 (177)
15 PRK10791 peptidyl-prolyl cis-t 100.0 9.4E-41 2E-45 290.0 18.6 150 360-512 2-164 (164)
16 PRK10903 peptidyl-prolyl cis-t 100.0 1.7E-40 3.7E-45 294.8 19.6 155 355-512 26-190 (190)
17 PTZ00221 cyclophilin; Provisio 100.0 1.6E-40 3.6E-45 301.8 19.6 155 355-513 50-221 (249)
18 PLN03149 peptidyl-prolyl isome 100.0 2.6E-40 5.6E-45 293.0 18.7 146 365-511 31-186 (186)
19 cd01926 cyclophilin_ABH_like c 100.0 6.7E-40 1.5E-44 286.6 16.8 144 364-509 12-164 (164)
20 PTZ00060 cyclophilin; Provisio 100.0 2.1E-39 4.5E-44 287.2 17.6 146 364-511 27-182 (183)
21 cd01920 cyclophilin_EcCYP_like 100.0 2.9E-39 6.2E-44 279.3 16.9 144 362-508 2-155 (155)
22 KOG0885 Peptidyl-prolyl cis-tr 100.0 1E-39 2.2E-44 299.4 13.4 160 352-511 7-167 (439)
23 KOG0415 Predicted peptidyl pro 100.0 1.6E-38 3.6E-43 288.9 13.5 155 358-512 1-163 (479)
24 cd00317 cyclophilin cyclophili 100.0 1.1E-37 2.5E-42 269.6 17.0 146 361-507 1-146 (146)
25 cd01924 cyclophilin_TLP40_like 100.0 1.9E-36 4.1E-41 265.9 16.7 140 363-513 3-176 (176)
26 KOG0111 Cyclophilin-type pepti 100.0 5.5E-37 1.2E-41 261.4 10.6 151 358-510 142-296 (298)
27 PF00160 Pro_isomerase: Cyclop 100.0 7.2E-36 1.6E-40 261.2 17.5 149 359-510 1-155 (155)
28 KOG0271 Notchless-like WD40 re 100.0 1.3E-34 2.7E-39 267.1 19.7 282 1-331 121-452 (480)
29 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-34 9.3E-39 266.9 18.0 269 1-316 181-458 (459)
30 KOG0271 Notchless-like WD40 re 100.0 1.3E-32 2.9E-37 253.8 20.0 248 1-316 163-479 (480)
31 KOG0286 G-protein beta subunit 100.0 5.2E-31 1.1E-35 235.6 24.4 235 1-316 103-343 (343)
32 KOG0279 G protein beta subunit 100.0 2.9E-30 6.4E-35 229.6 24.7 239 1-316 69-311 (315)
33 KOG0266 WD40 repeat-containing 100.0 9.9E-29 2.1E-33 253.4 27.3 253 1-329 165-420 (456)
34 KOG0263 Transcription initiati 100.0 1.1E-29 2.3E-34 254.9 18.9 238 2-321 385-652 (707)
35 KOG0293 WD40 repeat-containing 100.0 2.6E-29 5.6E-34 234.1 18.6 262 1-319 230-514 (519)
36 KOG0263 Transcription initiati 100.0 5E-29 1.1E-33 250.1 17.0 193 1-249 457-650 (707)
37 KOG0645 WD40 repeat protein [G 100.0 2.4E-27 5.1E-32 210.3 23.8 263 1-317 20-310 (312)
38 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-29 1.4E-33 232.5 13.9 226 1-246 223-458 (459)
39 KOG0316 Conserved WD40 repeat- 100.0 1.2E-27 2.5E-32 208.0 19.9 235 1-319 23-258 (307)
40 KOG0279 G protein beta subunit 100.0 5.4E-27 1.2E-31 208.8 22.9 232 7-323 28-267 (315)
41 KOG0865 Cyclophilin type pepti 100.0 3.3E-29 7.2E-34 213.1 7.4 146 363-510 14-166 (167)
42 KOG0284 Polyadenylation factor 100.0 5.3E-28 1.2E-32 225.3 15.8 239 1-323 144-385 (464)
43 KOG0285 Pleiotropic regulator 100.0 2.8E-27 6.1E-32 216.9 18.5 234 1-319 157-390 (460)
44 KOG0273 Beta-transducin family 100.0 1.9E-26 4.2E-31 218.5 23.8 205 1-260 241-494 (524)
45 KOG0286 G-protein beta subunit 100.0 1.1E-25 2.4E-30 201.6 26.4 237 1-318 61-303 (343)
46 KOG0275 Conserved WD40 repeat- 99.9 3.2E-27 6.9E-32 213.9 16.3 239 2-320 220-469 (508)
47 KOG0284 Polyadenylation factor 99.9 5E-28 1.1E-32 225.4 11.2 234 1-318 102-337 (464)
48 KOG0266 WD40 repeat-containing 99.9 2.6E-26 5.5E-31 235.6 24.6 239 1-318 209-454 (456)
49 KOG0291 WD40-repeat-containing 99.9 8E-26 1.7E-30 225.1 26.5 266 1-320 313-614 (893)
50 KOG0319 WD40-repeat-containing 99.9 3.1E-27 6.8E-32 234.9 15.8 238 5-321 375-622 (775)
51 KOG0295 WD40 repeat-containing 99.9 3.2E-27 6.8E-32 217.3 14.0 250 2-319 115-365 (406)
52 KOG0281 Beta-TrCP (transducin 99.9 1.7E-27 3.7E-32 217.5 11.9 225 5-320 205-430 (499)
53 KOG0295 WD40 repeat-containing 99.9 6.1E-26 1.3E-30 208.8 20.1 233 1-317 156-405 (406)
54 KOG0265 U5 snRNP-specific prot 99.9 9.3E-26 2E-30 202.9 20.7 244 1-264 53-312 (338)
55 KOG0315 G-protein beta subunit 99.9 3.4E-25 7.3E-30 194.3 21.4 209 1-260 89-300 (311)
56 KOG0291 WD40-repeat-containing 99.9 1.2E-24 2.7E-29 216.7 27.9 235 2-318 272-508 (893)
57 KOG0283 WD40 repeat-containing 99.9 3E-25 6.6E-30 224.8 21.5 246 1-321 273-579 (712)
58 KOG0315 G-protein beta subunit 99.9 3.9E-24 8.4E-29 187.6 24.6 235 8-319 11-246 (311)
59 KOG0640 mRNA cleavage stimulat 99.9 1.8E-25 4E-30 201.5 16.7 270 2-319 119-427 (430)
60 KOG1446 Histone H3 (Lys4) meth 99.9 2E-23 4.4E-28 189.6 29.8 282 1-376 20-304 (311)
61 KOG0281 Beta-TrCP (transducin 99.9 3.6E-26 7.7E-31 208.9 11.4 232 2-316 242-475 (499)
62 cd00200 WD40 WD40 domain, foun 99.9 1.1E-23 2.4E-28 201.9 28.7 267 1-316 15-289 (289)
63 KOG0273 Beta-transducin family 99.9 5.4E-25 1.2E-29 208.7 18.9 271 2-333 185-497 (524)
64 KOG0292 Vesicle coat complex C 99.9 1.4E-24 3E-29 219.5 20.5 247 1-270 15-300 (1202)
65 KOG0276 Vesicle coat complex C 99.9 2.4E-24 5.2E-29 210.5 20.6 236 1-319 19-258 (794)
66 KOG0318 WD40 repeat stress pro 99.9 3.4E-23 7.5E-28 198.9 27.9 240 2-258 66-360 (603)
67 KOG0282 mRNA splicing factor [ 99.9 5.7E-25 1.2E-29 209.4 14.4 267 1-316 220-503 (503)
68 PTZ00420 coronin; Provisional 99.9 2.6E-23 5.7E-28 213.8 27.0 230 13-318 50-293 (568)
69 KOG0645 WD40 repeat protein [G 99.9 2E-23 4.4E-28 185.4 21.8 230 1-248 67-311 (312)
70 KOG0276 Vesicle coat complex C 99.9 4.9E-24 1.1E-28 208.3 19.3 210 3-269 63-276 (794)
71 KOG1407 WD40 repeat protein [F 99.9 2E-23 4.3E-28 184.4 20.4 241 1-309 26-294 (313)
72 PLN00181 protein SPA1-RELATED; 99.9 6.2E-23 1.3E-27 225.8 28.6 236 1-320 489-740 (793)
73 PTZ00421 coronin; Provisional 99.9 1.4E-22 3E-27 207.6 28.8 198 3-251 28-248 (493)
74 PTZ00421 coronin; Provisional 99.9 2.1E-22 4.6E-27 206.2 30.1 204 1-256 81-298 (493)
75 KOG0277 Peroxisomal targeting 99.9 2.4E-24 5.1E-29 189.5 13.4 236 1-317 66-308 (311)
76 KOG0265 U5 snRNP-specific prot 99.9 3.9E-23 8.4E-28 186.1 20.6 282 1-337 1-315 (338)
77 KOG0318 WD40 repeat stress pro 99.9 1.2E-22 2.6E-27 195.3 24.5 307 8-321 161-563 (603)
78 KOG0305 Anaphase promoting com 99.9 4.4E-23 9.5E-28 204.1 21.3 230 1-317 223-460 (484)
79 KOG0274 Cdc4 and related F-box 99.9 8.6E-23 1.9E-27 209.4 22.8 224 3-319 257-483 (537)
80 KOG0285 Pleiotropic regulator 99.9 8.9E-23 1.9E-27 187.5 18.5 217 35-334 147-364 (460)
81 KOG0296 Angio-associated migra 99.9 1.4E-21 3.1E-26 180.3 25.1 267 1-316 70-396 (399)
82 PLN00181 protein SPA1-RELATED; 99.9 2.9E-21 6.2E-26 212.6 31.6 241 2-316 539-791 (793)
83 KOG0313 Microtubule binding pr 99.9 2E-21 4.3E-26 180.1 23.6 247 7-321 115-379 (423)
84 KOG0316 Conserved WD40 repeat- 99.9 7.9E-22 1.7E-26 171.8 17.3 203 2-260 66-269 (307)
85 KOG0973 Histone transcription 99.9 2.1E-21 4.6E-26 201.8 22.5 258 1-319 19-313 (942)
86 KOG0282 mRNA splicing factor [ 99.9 9.4E-23 2E-27 194.3 11.3 249 32-321 207-465 (503)
87 KOG0772 Uncharacterized conser 99.9 1.2E-21 2.7E-26 187.8 17.9 244 1-319 173-488 (641)
88 KOG0289 mRNA splicing factor [ 99.9 5.3E-21 1.1E-25 180.0 21.7 234 5-321 229-465 (506)
89 PTZ00420 coronin; Provisional 99.9 1.2E-20 2.6E-25 194.3 26.3 200 1-253 80-298 (568)
90 KOG0278 Serine/threonine kinas 99.9 5.7E-22 1.2E-26 174.1 12.9 264 5-319 27-298 (334)
91 KOG0319 WD40-repeat-containing 99.9 7.3E-21 1.6E-25 189.8 21.9 289 3-382 332-624 (775)
92 KOG0643 Translation initiation 99.9 4E-20 8.6E-25 164.2 24.1 264 1-316 16-315 (327)
93 KOG0313 Microtubule binding pr 99.9 8.7E-21 1.9E-25 175.9 20.3 227 8-317 160-417 (423)
94 cd00200 WD40 WD40 domain, foun 99.9 1.6E-20 3.5E-25 179.8 22.9 224 1-246 57-289 (289)
95 KOG1273 WD40 repeat protein [G 99.9 1.8E-20 4E-25 169.8 21.4 246 1-321 29-325 (405)
96 KOG0274 Cdc4 and related F-box 99.9 1.3E-20 2.7E-25 193.5 22.4 260 7-372 218-479 (537)
97 KOG0264 Nucleosome remodeling 99.9 9.8E-21 2.1E-25 179.7 19.8 250 7-319 137-405 (422)
98 KOG0296 Angio-associated migra 99.9 2.6E-20 5.6E-25 172.0 21.6 203 1-247 112-397 (399)
99 KOG0292 Vesicle coat complex C 99.9 1.1E-19 2.3E-24 184.4 27.5 174 1-180 57-289 (1202)
100 KOG0306 WD40-repeat-containing 99.9 1.4E-20 2.9E-25 188.0 20.5 269 1-319 379-665 (888)
101 KOG0293 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 175.6 19.4 250 35-346 220-501 (519)
102 KOG0277 Peroxisomal targeting 99.9 9.4E-21 2E-25 167.0 16.8 238 1-318 14-265 (311)
103 KOG0269 WD40 repeat-containing 99.9 2.2E-21 4.7E-26 194.4 14.5 228 6-313 99-335 (839)
104 KOG0289 mRNA splicing factor [ 99.9 5.4E-20 1.2E-24 173.3 22.5 235 1-316 267-504 (506)
105 KOG0310 Conserved WD40 repeat- 99.9 3.2E-20 6.9E-25 177.5 20.5 202 1-258 74-278 (487)
106 KOG0288 WD40 repeat protein Ti 99.9 4.1E-21 9E-26 179.8 13.8 220 2-258 182-427 (459)
107 KOG0310 Conserved WD40 repeat- 99.9 1.1E-20 2.3E-25 180.7 16.8 270 1-372 32-306 (487)
108 KOG1332 Vesicle coat complex C 99.9 2.8E-20 6E-25 163.2 18.0 236 6-254 22-293 (299)
109 KOG0283 WD40 repeat-containing 99.9 3.2E-20 6.8E-25 188.6 21.1 165 37-256 265-489 (712)
110 KOG0275 Conserved WD40 repeat- 99.9 2E-21 4.4E-26 176.4 10.6 205 38-321 212-426 (508)
111 KOG2096 WD40 repeat protein [G 99.9 5.6E-20 1.2E-24 166.9 19.7 252 1-318 92-402 (420)
112 KOG0308 Conserved WD40 repeat- 99.9 7.4E-21 1.6E-25 187.2 15.0 214 5-260 35-255 (735)
113 KOG0301 Phospholipase A2-activ 99.9 6.4E-20 1.4E-24 181.9 21.1 276 6-389 24-305 (745)
114 KOG0294 WD40 repeat-containing 99.8 1.5E-19 3.3E-24 164.0 20.9 233 3-318 49-281 (362)
115 KOG4283 Transcription-coupled 99.8 5.2E-20 1.1E-24 165.4 17.5 252 3-317 109-364 (397)
116 KOG1446 Histone H3 (Lys4) meth 99.8 2E-18 4.3E-23 157.3 26.6 204 3-258 64-272 (311)
117 KOG0647 mRNA export protein (c 99.8 2.1E-19 4.6E-24 162.2 17.4 196 1-238 33-312 (347)
118 KOG0264 Nucleosome remodeling 99.8 1.4E-19 3E-24 171.9 16.3 211 1-248 183-404 (422)
119 KOG1408 WD40 repeat protein [F 99.8 1.5E-19 3.3E-24 179.3 16.9 242 1-319 465-714 (1080)
120 KOG0643 Translation initiation 99.8 5.1E-19 1.1E-23 157.1 18.5 229 2-247 59-316 (327)
121 KOG0640 mRNA cleavage stimulat 99.8 1.1E-19 2.4E-24 164.3 14.2 219 1-268 178-404 (430)
122 KOG1036 Mitotic spindle checkp 99.8 7.3E-19 1.6E-23 159.4 18.2 232 1-260 19-274 (323)
123 KOG0973 Histone transcription 99.8 4.9E-19 1.1E-23 184.4 19.4 213 1-252 75-359 (942)
124 KOG1407 WD40 repeat protein [F 99.8 1.2E-18 2.7E-23 154.3 18.5 182 1-240 112-293 (313)
125 KOG1274 WD40 repeat protein [G 99.8 2.5E-18 5.5E-23 175.8 22.7 259 1-338 19-279 (933)
126 KOG0306 WD40-repeat-containing 99.8 1.5E-18 3.3E-23 173.6 20.3 202 1-256 460-672 (888)
127 KOG0641 WD40 repeat protein [G 99.8 7.9E-18 1.7E-22 146.0 21.9 202 1-248 95-303 (350)
128 KOG0267 Microtubule severing p 99.8 5.3E-20 1.2E-24 183.2 9.2 198 6-259 39-237 (825)
129 KOG4283 Transcription-coupled 99.8 1.9E-18 4.1E-23 155.4 17.5 310 6-376 55-388 (397)
130 KOG0278 Serine/threonine kinas 99.8 3.7E-19 8E-24 156.5 12.3 168 1-175 106-301 (334)
131 KOG0302 Ribosome Assembly prot 99.8 2.3E-18 5.1E-23 159.7 17.1 160 1-172 217-379 (440)
132 KOG0301 Phospholipase A2-activ 99.8 2.6E-18 5.6E-23 170.7 18.4 218 6-318 70-288 (745)
133 KOG0305 Anaphase promoting com 99.8 6.1E-18 1.3E-22 167.8 20.6 232 1-319 183-420 (484)
134 KOG0299 U3 snoRNP-associated p 99.8 1.4E-17 3E-22 158.4 20.7 244 1-318 148-410 (479)
135 KOG0641 WD40 repeat protein [G 99.8 1.8E-16 3.9E-21 137.6 25.7 223 1-269 38-282 (350)
136 KOG0267 Microtubule severing p 99.8 2.2E-19 4.8E-24 178.8 8.7 162 1-182 76-237 (825)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.4E-16 3.1E-21 155.1 28.0 242 1-321 36-282 (300)
138 KOG2445 Nuclear pore complex c 99.8 4.4E-17 9.5E-22 147.7 21.7 263 1-316 19-316 (361)
139 KOG0646 WD40 repeat protein [G 99.8 2E-17 4.2E-22 157.7 20.2 248 7-316 50-305 (476)
140 KOG4328 WD40 protein [Function 99.8 5.1E-18 1.1E-22 161.2 16.2 254 1-319 240-496 (498)
141 KOG0288 WD40 repeat protein Ti 99.8 7.7E-18 1.7E-22 158.0 16.7 196 1-245 225-458 (459)
142 KOG0299 U3 snoRNP-associated p 99.8 7.9E-18 1.7E-22 160.0 16.8 204 1-250 208-412 (479)
143 KOG1539 WD repeat protein [Gen 99.8 1.3E-16 2.9E-21 161.6 25.9 278 8-321 173-651 (910)
144 KOG0270 WD40 repeat-containing 99.8 1.4E-17 3.1E-22 157.7 17.5 235 6-318 191-449 (463)
145 KOG0300 WD40 repeat-containing 99.8 2.1E-17 4.6E-22 150.1 16.9 229 7-319 160-429 (481)
146 KOG0646 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 158.8 16.4 230 2-268 88-327 (476)
147 KOG0294 WD40 repeat-containing 99.8 7.4E-17 1.6E-21 146.7 20.4 224 9-319 3-238 (362)
148 KOG0772 Uncharacterized conser 99.8 1.3E-17 2.8E-22 160.4 16.1 164 2-180 275-454 (641)
149 KOG2048 WD40 repeat protein [G 99.8 2.7E-16 5.8E-21 156.2 25.6 214 1-260 31-245 (691)
150 KOG0308 Conserved WD40 repeat- 99.8 2E-17 4.2E-22 163.3 17.2 167 3-185 81-257 (735)
151 KOG0639 Transducin-like enhanc 99.8 9.8E-18 2.1E-22 160.6 14.6 204 2-246 472-702 (705)
152 KOG0268 Sof1-like rRNA process 99.8 5.6E-18 1.2E-22 156.5 12.4 257 8-318 80-345 (433)
153 KOG0639 Transducin-like enhanc 99.8 1.6E-17 3.4E-22 159.2 15.6 232 2-251 426-666 (705)
154 KOG0303 Actin-binding protein 99.8 3.5E-17 7.6E-22 152.8 17.1 203 36-315 78-291 (472)
155 KOG1445 Tumor-specific antigen 99.8 5E-17 1.1E-21 159.7 18.4 244 3-316 587-842 (1012)
156 KOG0302 Ribosome Assembly prot 99.7 2.2E-17 4.7E-22 153.4 13.6 195 6-249 164-379 (440)
157 KOG0268 Sof1-like rRNA process 99.7 2E-17 4.3E-22 152.9 11.5 167 40-258 188-355 (433)
158 KOG1274 WD40 repeat protein [G 99.7 5.9E-16 1.3E-20 158.6 23.0 200 2-249 61-263 (933)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.3E-14 5.1E-19 139.4 32.7 191 7-256 1-195 (300)
160 KOG0307 Vesicle coat complex C 99.7 2.3E-17 5E-22 172.8 10.8 241 1-321 70-330 (1049)
161 KOG1539 WD repeat protein [Gen 99.7 4.9E-16 1.1E-20 157.5 18.7 192 1-248 454-648 (910)
162 KOG0300 WD40 repeat-containing 99.7 3.3E-16 7E-21 142.4 14.9 219 33-319 142-387 (481)
163 KOG0269 WD40 repeat-containing 99.7 1.4E-16 2.9E-21 160.4 13.2 175 2-193 140-319 (839)
164 KOG0647 mRNA export protein (c 99.7 8.3E-16 1.8E-20 139.1 16.7 127 38-181 26-155 (347)
165 KOG2096 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 137.9 18.0 191 5-246 197-400 (420)
166 KOG2055 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 140.6 22.4 252 1-316 219-510 (514)
167 KOG2919 Guanine nucleotide-bin 99.7 8E-16 1.7E-20 140.4 15.3 204 4-257 120-337 (406)
168 KOG0303 Actin-binding protein 99.7 5.8E-16 1.3E-20 144.7 14.5 154 1-172 87-250 (472)
169 KOG0270 WD40 repeat-containing 99.7 1.1E-15 2.5E-20 144.9 16.6 196 7-254 256-455 (463)
170 KOG0321 WD40 repeat-containing 99.7 8.3E-16 1.8E-20 151.7 15.7 264 7-323 64-352 (720)
171 KOG1408 WD40 repeat protein [F 99.7 2.2E-15 4.7E-20 150.2 18.4 275 2-316 331-669 (1080)
172 KOG0649 WD40 repeat protein [G 99.7 1.9E-14 4.1E-19 126.6 22.1 269 2-317 17-315 (325)
173 KOG1332 Vesicle coat complex C 99.7 3.6E-16 7.8E-21 137.5 10.9 158 2-171 63-241 (299)
174 KOG1273 WD40 repeat protein [G 99.7 8.8E-15 1.9E-19 133.2 19.8 250 42-377 26-292 (405)
175 KOG2110 Uncharacterized conser 99.7 1.8E-14 3.9E-19 134.0 21.8 152 6-174 96-251 (391)
176 KOG2055 WD40 repeat protein [G 99.7 3.7E-15 8.1E-20 142.0 17.4 198 2-248 310-512 (514)
177 KOG0650 WD40 repeat nucleolar 99.7 5.4E-15 1.2E-19 144.9 18.9 235 1-318 406-680 (733)
178 KOG2919 Guanine nucleotide-bin 99.7 1.7E-14 3.8E-19 131.8 20.7 245 1-322 55-331 (406)
179 KOG1034 Transcriptional repres 99.7 4.1E-16 8.9E-21 142.6 9.8 258 7-318 105-383 (385)
180 KOG0642 Cell-cycle nuclear pro 99.6 9.3E-15 2E-19 142.7 18.2 255 34-323 289-566 (577)
181 KOG0321 WD40 repeat-containing 99.6 9.5E-15 2.1E-19 144.3 16.5 246 1-317 106-390 (720)
182 KOG1009 Chromatin assembly com 99.6 2.2E-15 4.7E-20 141.5 10.8 162 2-179 20-203 (434)
183 KOG1188 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 128.9 20.2 151 8-173 41-198 (376)
184 KOG4378 Nuclear protein COP1 [ 99.6 1.2E-14 2.6E-19 139.5 15.5 200 6-262 90-295 (673)
185 KOG2048 WD40 repeat protein [G 99.6 5.2E-13 1.1E-17 133.1 27.0 168 1-173 75-277 (691)
186 KOG4328 WD40 protein [Function 99.6 3.6E-14 7.8E-19 135.3 18.0 250 1-319 192-451 (498)
187 KOG1036 Mitotic spindle checkp 99.6 3.3E-14 7.2E-19 129.3 16.2 188 6-239 64-294 (323)
188 KOG1063 RNA polymerase II elon 99.6 5.6E-13 1.2E-17 133.1 23.6 256 1-318 273-648 (764)
189 KOG2106 Uncharacterized conser 99.6 2.1E-12 4.4E-17 124.7 26.1 241 2-319 207-478 (626)
190 KOG0307 Vesicle coat complex C 99.6 5.7E-15 1.2E-19 155.1 9.5 164 1-180 122-293 (1049)
191 PF08662 eIF2A: Eukaryotic tra 99.6 2.9E-13 6.4E-18 122.4 19.4 156 1-179 11-186 (194)
192 KOG4378 Nuclear protein COP1 [ 99.6 1.9E-13 4.1E-18 131.4 18.9 277 14-383 9-289 (673)
193 KOG1009 Chromatin assembly com 99.6 1.3E-13 2.8E-18 129.8 16.5 179 40-255 14-202 (434)
194 KOG1034 Transcriptional repres 99.6 2.6E-13 5.7E-18 124.4 18.0 149 8-174 56-214 (385)
195 KOG1523 Actin-related protein 99.6 4E-13 8.6E-18 122.9 19.0 217 2-250 17-238 (361)
196 KOG0642 Cell-cycle nuclear pro 99.6 2.1E-13 4.6E-18 133.3 18.0 218 2-257 301-570 (577)
197 KOG2106 Uncharacterized conser 99.6 6.1E-13 1.3E-17 128.3 20.8 148 1-172 374-522 (626)
198 PRK01742 tolB translocation pr 99.5 5.3E-13 1.2E-17 136.7 21.9 200 1-260 209-415 (429)
199 KOG1007 WD repeat protein TSSC 99.5 6.2E-14 1.3E-18 126.3 12.9 155 1-172 129-290 (370)
200 KOG2445 Nuclear pore complex c 99.5 5.7E-13 1.2E-17 121.2 18.2 214 6-248 72-318 (361)
201 KOG1188 WD40 repeat protein [G 99.5 2.3E-13 4.9E-18 125.5 14.5 165 2-179 77-250 (376)
202 PRK11028 6-phosphogluconolacto 99.5 3.5E-11 7.5E-16 119.3 30.2 251 1-318 40-304 (330)
203 COG2319 FOG: WD40 repeat [Gene 99.5 2.1E-11 4.6E-16 123.1 28.7 197 2-252 72-275 (466)
204 KOG4497 Uncharacterized conser 99.5 1.6E-14 3.5E-19 132.2 5.0 228 2-257 15-249 (447)
205 KOG1538 Uncharacterized conser 99.5 9.5E-13 2.1E-17 130.7 17.6 261 1-317 18-292 (1081)
206 KOG1445 Tumor-specific antigen 99.5 1.8E-13 3.9E-18 135.1 12.4 156 1-172 633-799 (1012)
207 KOG1310 WD40 repeat protein [G 99.5 2.2E-13 4.8E-18 132.5 12.7 162 1-171 56-231 (758)
208 KOG0771 Prolactin regulatory e 99.5 6.9E-13 1.5E-17 125.7 15.4 197 1-248 150-354 (398)
209 PF08662 eIF2A: Eukaryotic tra 99.5 4E-12 8.7E-17 115.0 19.6 159 42-257 8-187 (194)
210 COG2319 FOG: WD40 repeat [Gene 99.5 3E-11 6.5E-16 122.0 28.2 197 4-257 119-323 (466)
211 KOG0290 Conserved WD40 repeat- 99.5 1.4E-12 3.1E-17 117.7 15.8 239 7-319 59-319 (364)
212 KOG4227 WD40 repeat protein [G 99.5 2.7E-12 6E-17 120.1 17.9 250 1-318 62-322 (609)
213 KOG2110 Uncharacterized conser 99.5 5.2E-12 1.1E-16 117.9 19.4 184 9-250 58-250 (391)
214 KOG0644 Uncharacterized conser 99.5 6.1E-14 1.3E-18 142.3 7.1 229 2-319 197-427 (1113)
215 KOG1524 WD40 repeat-containing 99.5 3.6E-13 7.9E-18 130.6 12.0 203 8-241 76-278 (737)
216 PRK03629 tolB translocation pr 99.4 2.1E-11 4.5E-16 124.8 23.8 200 1-260 204-417 (429)
217 KOG1007 WD repeat protein TSSC 99.4 1.5E-12 3.2E-17 117.5 13.1 164 2-171 177-361 (370)
218 PRK02889 tolB translocation pr 99.4 1.8E-11 4E-16 125.2 23.1 199 1-256 201-410 (427)
219 KOG1334 WD40 repeat protein [G 99.4 2E-12 4.4E-17 124.4 14.4 309 1-368 148-468 (559)
220 KOG1272 WD40-repeat-containing 99.4 1.8E-12 4E-17 123.9 12.7 161 1-179 135-331 (545)
221 KOG2321 WD40 repeat protein [G 99.4 2.5E-11 5.5E-16 119.1 19.7 210 1-257 57-311 (703)
222 KOG1354 Serine/threonine prote 99.4 5.4E-12 1.2E-16 116.6 14.2 243 1-271 31-324 (433)
223 KOG0290 Conserved WD40 repeat- 99.4 1.3E-11 2.8E-16 111.7 16.2 151 6-172 162-319 (364)
224 KOG4497 Uncharacterized conser 99.4 1.1E-10 2.3E-15 107.5 21.4 283 1-320 54-393 (447)
225 KOG1063 RNA polymerase II elon 99.4 9.2E-12 2E-16 124.6 15.5 124 36-173 522-650 (764)
226 PRK04922 tolB translocation pr 99.4 1.1E-10 2.5E-15 119.7 23.7 196 1-256 209-418 (433)
227 KOG2139 WD40 repeat protein [G 99.4 3.1E-11 6.7E-16 112.3 17.3 191 1-247 104-308 (445)
228 PRK11028 6-phosphogluconolacto 99.4 1E-10 2.3E-15 115.9 22.0 204 1-252 85-310 (330)
229 KOG2394 WD40 protein DMR-N9 [G 99.4 1.2E-11 2.5E-16 120.5 14.5 174 5-193 183-384 (636)
230 PRK05137 tolB translocation pr 99.4 1.3E-10 2.8E-15 119.5 23.4 192 1-252 207-416 (435)
231 KOG1517 Guanine nucleotide bin 99.4 5.7E-11 1.2E-15 124.0 20.2 248 6-321 1122-1384(1387)
232 KOG1587 Cytoplasmic dynein int 99.3 1E-10 2.2E-15 120.0 21.3 279 16-371 221-512 (555)
233 PRK01742 tolB translocation pr 99.3 7.7E-11 1.7E-15 120.8 20.6 180 16-255 183-368 (429)
234 KOG1523 Actin-related protein 99.3 1.8E-10 3.9E-15 105.8 19.0 171 1-174 61-239 (361)
235 KOG2111 Uncharacterized conser 99.3 1.4E-10 3.1E-15 106.4 18.1 151 7-173 104-258 (346)
236 KOG0322 G-protein beta subunit 99.3 1.8E-11 3.9E-16 109.3 10.6 146 9-170 167-322 (323)
237 KOG2111 Uncharacterized conser 99.3 2.2E-09 4.8E-14 98.7 23.9 178 17-249 75-257 (346)
238 KOG1587 Cytoplasmic dynein int 99.3 1.3E-10 2.8E-15 119.2 17.2 242 2-249 249-517 (555)
239 KOG1963 WD40 repeat protein [G 99.3 7.5E-10 1.6E-14 114.2 22.5 171 1-179 211-383 (792)
240 TIGR02800 propeller_TolB tol-p 99.3 8.9E-10 1.9E-14 112.9 23.3 152 2-175 196-358 (417)
241 KOG1310 WD40 repeat protein [G 99.3 2.3E-10 5E-15 111.8 16.8 131 34-172 45-179 (758)
242 PF02239 Cytochrom_D1: Cytochr 99.2 5.7E-09 1.2E-13 103.9 27.0 267 2-321 43-350 (369)
243 KOG0322 G-protein beta subunit 99.2 1.3E-10 2.7E-15 104.0 13.3 150 50-247 162-322 (323)
244 KOG1240 Protein kinase contain 99.2 3.4E-09 7.3E-14 112.8 26.1 260 4-323 1058-1339(1431)
245 KOG4547 WD40 repeat-containing 99.2 6.2E-10 1.3E-14 110.2 19.4 168 4-189 2-190 (541)
246 PRK01029 tolB translocation pr 99.2 2.4E-09 5.3E-14 109.2 24.2 203 2-257 191-412 (428)
247 KOG0974 WD-repeat protein WDR6 99.2 2.7E-10 5.9E-15 119.3 17.2 189 5-249 97-289 (967)
248 PRK03629 tolB translocation pr 99.2 1.2E-08 2.7E-13 104.4 29.3 180 18-255 180-370 (429)
249 KOG2394 WD40 protein DMR-N9 [G 99.2 5E-11 1.1E-15 116.2 10.6 89 1-95 296-384 (636)
250 PRK05137 tolB translocation pr 99.2 9.4E-09 2E-13 105.7 28.2 177 17-251 182-369 (435)
251 PRK04792 tolB translocation pr 99.2 2.2E-09 4.8E-14 110.4 23.2 194 2-256 224-432 (448)
252 KOG1524 WD40 repeat-containing 99.2 1.3E-10 2.9E-15 113.2 12.9 158 2-167 111-282 (737)
253 KOG1538 Uncharacterized conser 99.2 1.4E-10 3.1E-15 115.5 12.7 154 41-255 14-169 (1081)
254 PRK02889 tolB translocation pr 99.2 6.1E-09 1.3E-13 106.7 25.2 183 17-255 176-367 (427)
255 KOG3881 Uncharacterized conser 99.2 1.9E-09 4E-14 101.7 19.2 239 7-319 69-321 (412)
256 KOG0771 Prolactin regulatory e 99.2 1.8E-10 3.8E-15 109.6 12.6 158 1-172 192-355 (398)
257 KOG0649 WD40 repeat protein [G 99.2 2.2E-09 4.7E-14 95.1 18.3 173 45-260 16-198 (325)
258 PRK00178 tolB translocation pr 99.2 4.6E-09 9.9E-14 108.1 24.0 188 2-249 205-407 (430)
259 PRK04922 tolB translocation pr 99.2 8.5E-09 1.8E-13 105.9 25.5 179 17-253 184-373 (433)
260 KOG1963 WD40 repeat protein [G 99.1 1E-08 2.2E-13 106.0 23.1 211 2-256 167-383 (792)
261 KOG1517 Guanine nucleotide bin 99.1 1.1E-09 2.4E-14 114.7 16.2 204 2-250 1172-1383(1387)
262 KOG3881 Uncharacterized conser 99.1 9.4E-10 2E-14 103.7 14.0 156 8-177 162-326 (412)
263 KOG3914 WD repeat protein WDR4 99.1 1.7E-09 3.7E-14 102.4 13.9 163 2-182 69-234 (390)
264 KOG0650 WD40 repeat nucleolar 99.1 2.7E-10 5.8E-15 112.5 8.7 156 1-168 572-732 (733)
265 KOG2139 WD40 repeat protein [G 99.1 1.3E-08 2.8E-13 95.1 18.4 140 1-160 146-299 (445)
266 KOG4227 WD40 repeat protein [G 99.1 7E-09 1.5E-13 97.6 16.7 269 1-318 111-387 (609)
267 PF02239 Cytochrom_D1: Cytochr 99.1 2.3E-08 4.9E-13 99.7 20.8 188 52-256 5-210 (369)
268 TIGR02800 propeller_TolB tol-p 99.0 2.1E-07 4.5E-12 95.4 27.7 178 18-253 171-359 (417)
269 KOG1272 WD40-repeat-containing 99.0 5.3E-10 1.2E-14 107.4 7.4 145 2-169 216-360 (545)
270 PRK00178 tolB translocation pr 99.0 2.8E-07 6.1E-12 94.8 27.5 179 18-254 180-369 (430)
271 KOG1334 WD40 repeat protein [G 99.0 4.2E-09 9.1E-14 101.9 11.9 242 7-319 199-467 (559)
272 PF10282 Lactonase: Lactonase, 99.0 1E-06 2.3E-11 87.6 29.6 253 1-318 42-322 (345)
273 KOG0974 WD-repeat protein WDR6 99.0 4.6E-09 9.9E-14 110.3 12.6 147 3-172 141-289 (967)
274 KOG1354 Serine/threonine prote 99.0 1.2E-07 2.7E-12 88.1 20.2 225 2-252 91-363 (433)
275 PRK04792 tolB translocation pr 98.9 7.2E-07 1.6E-11 91.8 27.8 178 18-253 199-387 (448)
276 KOG0644 Uncharacterized conser 98.9 8.5E-10 1.8E-14 112.8 4.9 114 36-171 187-300 (1113)
277 PRK04043 tolB translocation pr 98.9 5E-07 1.1E-11 91.8 25.1 191 2-253 194-405 (419)
278 COG4946 Uncharacterized protei 98.9 1.4E-06 3.1E-11 84.4 26.0 186 6-255 331-521 (668)
279 KOG1064 RAVE (regulator of V-A 98.9 9E-09 2E-13 113.2 11.7 187 4-257 2217-2407(2439)
280 PF10282 Lactonase: Lactonase, 98.9 1.1E-06 2.4E-11 87.4 25.5 213 1-255 92-331 (345)
281 KOG1240 Protein kinase contain 98.9 1.6E-07 3.5E-12 100.4 20.0 164 3-182 1106-1284(1431)
282 COG2706 3-carboxymuconate cycl 98.8 8.3E-06 1.8E-10 77.1 27.8 250 1-318 45-321 (346)
283 PLN02919 haloacid dehalogenase 98.8 6.2E-06 1.3E-10 93.0 32.1 281 1-321 573-891 (1057)
284 TIGR02658 TTQ_MADH_Hv methylam 98.8 4.9E-06 1.1E-10 81.4 27.3 205 3-256 53-338 (352)
285 KOG0280 Uncharacterized conser 98.8 3.1E-07 6.8E-12 83.9 17.2 120 42-176 124-247 (339)
286 PRK01029 tolB translocation pr 98.8 2.6E-07 5.6E-12 94.4 18.3 158 2-178 237-410 (428)
287 KOG0280 Uncharacterized conser 98.8 2.4E-07 5.3E-12 84.6 15.8 118 1-120 127-246 (339)
288 KOG4547 WD40 repeat-containing 98.8 2.4E-07 5.1E-12 92.2 15.8 148 5-172 68-221 (541)
289 KOG2315 Predicted translation 98.8 9.3E-07 2E-11 87.5 19.3 184 14-256 191-397 (566)
290 PLN02919 haloacid dehalogenase 98.7 4.5E-06 9.8E-11 94.1 26.0 224 1-254 629-894 (1057)
291 COG5170 CDC55 Serine/threonine 98.7 1.6E-07 3.6E-12 86.2 11.7 225 2-260 33-322 (460)
292 KOG4190 Uncharacterized conser 98.7 2.6E-07 5.6E-12 90.9 12.7 271 30-397 726-1008(1034)
293 KOG4532 WD40-like repeat conta 98.7 5.7E-06 1.2E-10 74.9 19.7 157 10-179 131-290 (344)
294 KOG2314 Translation initiation 98.6 1.2E-06 2.5E-11 86.6 16.2 233 1-240 255-558 (698)
295 KOG4714 Nucleoporin [Nuclear s 98.6 2.6E-07 5.6E-12 83.0 10.4 149 6-172 100-255 (319)
296 KOG0882 Cyclophilin-related pe 98.6 1E-07 2.2E-12 91.6 8.3 187 298-510 63-261 (558)
297 KOG2315 Predicted translation 98.6 1.7E-06 3.7E-11 85.7 16.9 135 18-177 252-395 (566)
298 KOG2321 WD40 repeat protein [G 98.6 4.9E-07 1.1E-11 89.6 12.6 153 11-184 149-315 (703)
299 KOG1409 Uncharacterized conser 98.6 1.3E-06 2.9E-11 81.5 14.4 152 3-174 122-273 (404)
300 COG5354 Uncharacterized protei 98.6 3.5E-05 7.6E-10 75.8 24.6 167 1-173 77-308 (561)
301 COG2706 3-carboxymuconate cycl 98.6 3.5E-05 7.5E-10 73.0 23.5 210 1-255 94-330 (346)
302 COG4946 Uncharacterized protei 98.6 1.7E-05 3.7E-10 77.2 21.5 194 3-256 274-485 (668)
303 KOG4532 WD40-like repeat conta 98.5 1E-05 2.3E-10 73.2 17.8 204 7-257 84-291 (344)
304 PF00400 WD40: WD domain, G-be 98.5 2.5E-07 5.4E-12 59.9 5.3 38 76-113 2-39 (39)
305 KOG2041 WD40 repeat protein [G 98.5 4.5E-06 9.8E-11 84.8 15.7 154 1-171 20-186 (1189)
306 PF00400 WD40: WD domain, G-be 98.5 3.2E-07 6.8E-12 59.3 4.9 38 132-169 2-39 (39)
307 KOG1912 WD40 repeat protein [G 98.5 3E-05 6.5E-10 79.8 21.3 257 1-319 21-305 (1062)
308 KOG2695 WD40 repeat protein [G 98.5 7E-07 1.5E-11 83.3 8.6 152 11-180 228-385 (425)
309 KOG4190 Uncharacterized conser 98.4 9.1E-07 2E-11 87.1 9.2 160 6-180 746-915 (1034)
310 PF15492 Nbas_N: Neuroblastoma 98.4 4.1E-05 8.9E-10 70.4 19.1 177 1-180 49-268 (282)
311 KOG1409 Uncharacterized conser 98.4 2.9E-05 6.3E-10 72.8 18.2 181 7-191 36-248 (404)
312 KOG1064 RAVE (regulator of V-A 98.4 5.6E-07 1.2E-11 99.6 8.0 147 1-180 2257-2407(2439)
313 PF08450 SGL: SMP-30/Gluconola 98.4 0.00029 6.2E-09 66.6 24.8 200 2-257 6-221 (246)
314 PRK04043 tolB translocation pr 98.4 0.00024 5.3E-09 72.3 25.5 117 41-175 189-313 (419)
315 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00092 2E-08 65.6 26.0 97 17-119 27-140 (352)
316 PF07433 DUF1513: Protein of u 98.2 0.00068 1.5E-08 64.4 23.0 225 1-260 10-259 (305)
317 KOG3914 WD repeat protein WDR4 98.2 2.3E-05 4.9E-10 75.0 12.8 160 43-256 66-231 (390)
318 PF07433 DUF1513: Protein of u 98.2 0.00038 8.2E-09 66.0 20.7 166 2-179 57-255 (305)
319 TIGR03300 assembly_YfgL outer 98.2 0.001 2.2E-08 67.1 25.4 157 6-179 104-267 (377)
320 KOG2041 WD40 repeat protein [G 98.2 0.00016 3.5E-09 73.9 18.8 116 40-171 15-145 (1189)
321 KOG2314 Translation initiation 98.2 0.00025 5.4E-09 70.6 19.3 153 1-178 216-388 (698)
322 KOG0309 Conserved WD40 repeat- 98.1 4.9E-05 1.1E-09 77.9 14.3 175 1-191 30-209 (1081)
323 PF15492 Nbas_N: Neuroblastoma 98.1 0.00077 1.7E-08 62.2 20.6 237 1-260 3-271 (282)
324 PF04762 IKI3: IKI3 family; I 98.1 0.0014 3E-08 73.1 26.7 159 1-177 126-339 (928)
325 PF11768 DUF3312: Protein of u 98.1 0.00013 2.9E-09 73.6 16.7 94 66-175 239-333 (545)
326 KOG2066 Vacuolar assembly/sort 98.1 0.00014 3E-09 75.5 16.9 181 6-248 48-233 (846)
327 KOG1832 HIV-1 Vpr-binding prot 98.1 1.9E-06 4.1E-11 89.4 3.1 190 1-257 1107-1300(1516)
328 COG5354 Uncharacterized protei 98.1 0.00035 7.6E-09 69.0 17.8 179 14-252 199-399 (561)
329 PF04762 IKI3: IKI3 family; I 98.1 0.0025 5.5E-08 71.0 27.0 207 39-253 75-338 (928)
330 KOG2695 WD40 repeat protein [G 98.0 1E-05 2.3E-10 75.7 6.6 156 57-260 228-388 (425)
331 KOG0309 Conserved WD40 repeat- 98.0 4.5E-05 9.8E-10 78.1 11.6 176 2-194 121-310 (1081)
332 KOG2066 Vacuolar assembly/sort 98.0 0.00013 2.8E-09 75.8 14.9 149 6-171 82-233 (846)
333 PF13360 PQQ_2: PQQ-like domai 98.0 0.004 8.7E-08 58.2 24.3 149 15-181 1-150 (238)
334 KOG3621 WD40 repeat-containing 98.0 0.00012 2.6E-09 74.9 14.0 112 2-116 40-155 (726)
335 COG5170 CDC55 Serine/threonine 98.0 0.00016 3.4E-09 67.0 12.8 150 36-189 169-328 (460)
336 TIGR03300 assembly_YfgL outer 97.9 0.0081 1.8E-07 60.6 26.5 152 6-179 64-216 (377)
337 PF06977 SdiA-regulated: SdiA- 97.8 0.0026 5.6E-08 59.5 19.1 171 1-179 27-208 (248)
338 PF13360 PQQ_2: PQQ-like domai 97.8 0.0056 1.2E-07 57.2 21.8 195 5-253 34-235 (238)
339 PF08450 SGL: SMP-30/Gluconola 97.8 0.0057 1.2E-07 57.7 21.6 162 2-180 46-221 (246)
340 KOG1275 PAB-dependent poly(A) 97.8 0.00065 1.4E-08 71.6 15.8 184 6-246 146-340 (1118)
341 KOG1275 PAB-dependent poly(A) 97.8 0.00017 3.7E-09 75.8 11.4 146 5-169 185-340 (1118)
342 COG0823 TolB Periplasmic compo 97.7 0.00073 1.6E-08 68.5 14.8 151 2-174 199-361 (425)
343 KOG2114 Vacuolar assembly/sort 97.7 0.005 1.1E-07 64.9 20.2 203 2-257 30-252 (933)
344 PRK02888 nitrous-oxide reducta 97.7 0.003 6.4E-08 65.7 18.4 157 3-172 200-405 (635)
345 KOG1912 WD40 repeat protein [G 97.7 0.00034 7.4E-09 72.3 11.4 126 42-187 18-159 (1062)
346 KOG4714 Nucleoporin [Nuclear s 97.7 0.00024 5.2E-09 64.3 8.6 74 41-116 181-255 (319)
347 KOG1645 RING-finger-containing 97.6 0.0043 9.4E-08 59.8 16.4 94 19-118 175-269 (463)
348 PF04841 Vps16_N: Vps16, N-ter 97.6 0.031 6.7E-07 56.9 23.7 235 2-257 35-323 (410)
349 COG3391 Uncharacterized conser 97.5 0.054 1.2E-06 54.6 24.9 206 1-257 79-292 (381)
350 PF04053 Coatomer_WDAD: Coatom 97.5 0.013 2.8E-07 59.8 20.0 134 1-170 38-172 (443)
351 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.07 1.5E-06 48.9 22.0 229 7-315 63-297 (354)
352 KOG1920 IkappaB kinase complex 97.4 0.0049 1.1E-07 67.3 16.4 159 1-176 115-327 (1265)
353 PF11768 DUF3312: Protein of u 97.4 0.0012 2.6E-08 66.9 11.2 90 20-116 239-330 (545)
354 PF06433 Me-amine-dh_H: Methyl 97.4 0.069 1.5E-06 51.6 22.2 252 2-320 42-322 (342)
355 KOG1008 Uncharacterized conser 97.3 6.8E-05 1.5E-09 75.8 1.1 152 2-172 109-276 (783)
356 smart00320 WD40 WD40 repeats. 97.3 0.00068 1.5E-08 42.1 5.5 38 76-113 3-40 (40)
357 KOG2114 Vacuolar assembly/sort 97.3 0.015 3.3E-07 61.4 16.9 154 55-252 37-204 (933)
358 PF00780 CNH: CNH domain; Int 97.2 0.059 1.3E-06 51.6 20.5 231 2-258 2-265 (275)
359 PRK11138 outer membrane biogen 97.2 0.13 2.9E-06 52.1 23.9 157 7-178 120-281 (394)
360 PF08553 VID27: VID27 cytoplas 97.2 0.041 8.9E-07 59.5 20.4 144 8-170 494-646 (794)
361 PRK11138 outer membrane biogen 97.2 0.082 1.8E-06 53.7 21.7 150 7-177 160-318 (394)
362 KOG1920 IkappaB kinase complex 97.1 0.17 3.6E-06 56.0 23.9 153 2-175 75-277 (1265)
363 smart00320 WD40 WD40 repeats. 97.1 0.00088 1.9E-08 41.6 4.4 36 134-169 5-40 (40)
364 KOG3617 WD40 and TPR repeat-co 97.1 0.0011 2.3E-08 69.4 6.2 105 2-114 22-130 (1416)
365 KOG3621 WD40 repeat-containing 96.9 0.0092 2E-07 61.7 11.1 121 38-172 32-155 (726)
366 cd00216 PQQ_DH Dehydrogenases 96.9 0.78 1.7E-05 48.0 26.0 165 8-180 111-328 (488)
367 KOG1832 HIV-1 Vpr-binding prot 96.8 0.0012 2.6E-08 69.4 4.3 127 76-256 1092-1222(1516)
368 KOG1645 RING-finger-containing 96.7 0.0042 9E-08 59.9 6.8 93 65-174 175-269 (463)
369 KOG4640 Anaphase-promoting com 96.7 0.0057 1.2E-07 62.4 8.0 79 86-179 21-100 (665)
370 KOG1008 Uncharacterized conser 96.7 0.0086 1.9E-07 61.2 9.2 146 7-169 70-223 (783)
371 PRK02888 nitrous-oxide reducta 96.7 0.032 7E-07 58.2 13.5 94 16-116 295-405 (635)
372 KOG4640 Anaphase-promoting com 96.6 0.01 2.2E-07 60.6 9.2 75 39-118 20-95 (665)
373 PF06433 Me-amine-dh_H: Methyl 96.6 0.18 3.9E-06 48.8 17.2 171 2-181 101-330 (342)
374 PRK00969 hypothetical protein; 96.6 0.013 2.9E-07 58.7 9.5 171 298-489 117-305 (508)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.72 1.6E-05 46.5 21.1 43 141-183 307-349 (415)
376 TIGR03268 methan_mark_3 putati 96.4 0.022 4.7E-07 57.0 10.0 170 299-489 114-302 (503)
377 PF06977 SdiA-regulated: SdiA- 96.4 0.81 1.8E-05 42.9 24.7 132 33-171 15-147 (248)
378 COG0823 TolB Periplasmic compo 96.4 0.033 7.2E-07 56.6 11.7 138 2-161 244-389 (425)
379 PF05096 Glu_cyclase_2: Glutam 96.3 0.97 2.1E-05 42.4 20.9 159 2-181 51-213 (264)
380 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.44 9.4E-06 38.2 14.2 89 55-166 17-109 (111)
381 PF04053 Coatomer_WDAD: Coatom 96.2 0.28 6.1E-06 50.2 16.8 142 40-250 33-175 (443)
382 PF08553 VID27: VID27 cytoplas 96.1 0.17 3.7E-06 54.9 15.6 147 54-248 495-647 (794)
383 PF02897 Peptidase_S9_N: Proly 96.1 1.9 4.2E-05 43.9 23.3 113 2-117 130-262 (414)
384 KOG4499 Ca2+-binding protein R 96.1 0.8 1.7E-05 41.6 17.0 198 15-257 35-250 (310)
385 PF00930 DPPIV_N: Dipeptidyl p 96.1 0.14 3E-06 51.1 14.1 165 4-177 1-224 (353)
386 KOG3617 WD40 and TPR repeat-co 96.1 0.015 3.2E-07 61.3 7.0 112 42-171 18-131 (1416)
387 PF08596 Lgl_C: Lethal giant l 96.0 1.3 2.8E-05 44.7 20.5 196 6-248 96-335 (395)
388 PRK13616 lipoprotein LpqB; Pro 96.0 0.21 4.5E-06 53.2 15.2 149 1-169 355-523 (591)
389 COG3391 Uncharacterized conser 95.8 1.2 2.6E-05 44.9 19.4 158 1-180 121-292 (381)
390 PF12894 Apc4_WD40: Anaphase-p 95.8 0.029 6.3E-07 37.4 5.1 34 141-175 11-44 (47)
391 KOG2395 Protein involved in va 95.8 0.18 3.9E-06 50.9 12.7 142 10-170 349-499 (644)
392 COG3386 Gluconolactonase [Carb 95.8 2.1 4.6E-05 41.6 22.2 208 3-257 32-251 (307)
393 KOG4649 PQQ (pyrrolo-quinoline 95.6 0.56 1.2E-05 43.2 14.1 105 7-119 23-127 (354)
394 KOG2444 WD40 repeat protein [G 95.6 0.043 9.3E-07 49.4 7.0 106 7-116 70-178 (238)
395 PF14783 BBS2_Mid: Ciliary BBS 95.5 1 2.2E-05 36.1 13.6 93 5-110 12-109 (111)
396 COG3204 Uncharacterized protei 95.4 2.4 5.2E-05 40.1 18.3 156 1-170 91-262 (316)
397 cd00216 PQQ_DH Dehydrogenases 95.4 1.7 3.7E-05 45.5 19.4 164 7-180 61-273 (488)
398 KOG4441 Proteins containing BT 95.2 1.3 2.7E-05 47.3 17.8 150 6-175 284-456 (571)
399 COG3490 Uncharacterized protei 95.1 3.1 6.7E-05 39.1 20.4 116 27-160 58-180 (366)
400 KOG2395 Protein involved in va 95.0 1.4 3E-05 44.8 15.9 144 52-247 345-499 (644)
401 PF05694 SBP56: 56kDa selenium 94.7 0.7 1.5E-05 46.2 13.2 141 16-158 221-390 (461)
402 PF14583 Pectate_lyase22: Olig 94.7 4.9 0.00011 39.9 19.0 168 2-178 42-230 (386)
403 PF04841 Vps16_N: Vps16, N-ter 94.7 4 8.7E-05 41.6 19.3 48 64-115 62-109 (410)
404 PHA02713 hypothetical protein; 94.7 0.43 9.3E-06 50.8 12.7 154 5-178 350-540 (557)
405 PRK00969 hypothetical protein; 94.7 0.3 6.6E-06 49.3 10.6 117 356-490 49-167 (508)
406 TIGR03268 methan_mark_3 putati 94.6 0.38 8.2E-06 48.5 11.0 118 355-490 44-164 (503)
407 PRK13616 lipoprotein LpqB; Pro 94.6 2.3 5E-05 45.4 17.7 114 41-167 351-472 (591)
408 PF12234 Rav1p_C: RAVE protein 94.6 0.94 2E-05 48.0 14.4 118 41-169 31-154 (631)
409 PF08596 Lgl_C: Lethal giant l 94.5 1 2.2E-05 45.5 14.3 264 1-319 7-291 (395)
410 KOG2079 Vacuolar assembly/sort 94.4 0.17 3.6E-06 55.3 8.7 99 55-170 101-202 (1206)
411 COG3823 Glutamine cyclotransfe 94.4 2.7 5.8E-05 37.7 14.5 158 6-181 55-214 (262)
412 PF10647 Gmad1: Lipoprotein Lp 94.3 2.8 6E-05 39.6 16.0 149 1-161 29-185 (253)
413 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.3 8.6 0.00019 40.6 26.9 164 8-177 121-339 (527)
414 PF03178 CPSF_A: CPSF A subuni 94.3 1.1 2.3E-05 44.1 13.7 142 7-171 42-202 (321)
415 KOG2444 WD40 repeat protein [G 94.2 0.15 3.2E-06 46.1 6.5 103 55-172 72-178 (238)
416 PF14761 HPS3_N: Hermansky-Pud 94.1 4.3 9.4E-05 36.7 16.7 110 60-173 35-165 (215)
417 PF00780 CNH: CNH domain; Int 94.0 5.8 0.00013 37.7 21.2 164 55-259 9-176 (275)
418 PF12894 Apc4_WD40: Anaphase-p 93.5 0.19 4.1E-06 33.5 4.6 30 85-114 11-40 (47)
419 PF15390 DUF4613: Domain of un 93.4 1.6 3.5E-05 45.1 12.9 118 40-170 57-185 (671)
420 COG3386 Gluconolactonase [Carb 93.4 2.9 6.3E-05 40.6 14.5 152 18-181 86-252 (307)
421 PF02897 Peptidase_S9_N: Proly 93.4 3.4 7.4E-05 42.1 16.0 118 43-173 127-262 (414)
422 PHA02713 hypothetical protein; 93.4 2.8 6E-05 44.7 15.6 31 230-260 512-545 (557)
423 PF08728 CRT10: CRT10; InterP 93.3 6.8 0.00015 42.2 18.0 151 7-170 49-245 (717)
424 TIGR03074 PQQ_membr_DH membran 93.1 16 0.00036 40.3 22.5 110 7-119 194-348 (764)
425 KOG2079 Vacuolar assembly/sort 92.8 0.32 6.9E-06 53.2 7.5 100 7-113 99-201 (1206)
426 COG4070 Predicted peptidyl-pro 92.8 0.29 6.4E-06 47.3 6.5 102 368-490 204-305 (512)
427 PF12903 DUF3830: Protein of u 92.7 0.4 8.6E-06 40.4 6.4 24 366-389 7-30 (147)
428 COG3490 Uncharacterized protei 92.5 9.8 0.00021 35.9 22.5 142 10-158 83-242 (366)
429 PHA03098 kelch-like protein; P 92.4 11 0.00024 39.9 18.8 106 6-117 294-416 (534)
430 KOG1916 Nuclear protein, conta 92.0 0.13 2.8E-06 54.9 3.4 93 63-170 153-264 (1283)
431 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.7 20 0.00043 37.9 20.2 107 7-119 69-193 (527)
432 KOG4441 Proteins containing BT 91.6 11 0.00023 40.3 17.2 152 5-176 331-504 (571)
433 TIGR02604 Piru_Ver_Nterm putat 91.3 5.4 0.00012 40.0 14.0 100 1-104 19-142 (367)
434 KOG3630 Nuclear pore complex, 90.7 1.7 3.8E-05 48.1 10.1 113 44-170 105-227 (1405)
435 PF12234 Rav1p_C: RAVE protein 90.7 4.3 9.3E-05 43.2 12.9 97 14-113 48-154 (631)
436 PF05694 SBP56: 56kDa selenium 90.7 14 0.00031 37.2 15.7 164 5-172 139-343 (461)
437 PF05935 Arylsulfotrans: Aryls 90.6 6.9 0.00015 40.8 14.5 181 51-260 113-313 (477)
438 KOG1916 Nuclear protein, conta 90.1 0.62 1.3E-05 50.1 6.1 148 17-176 153-328 (1283)
439 COG4070 Predicted peptidyl-pro 90.1 1.1 2.3E-05 43.6 7.1 23 368-390 377-399 (512)
440 PHA03098 kelch-like protein; P 89.9 11 0.00023 40.0 15.7 152 5-176 341-516 (534)
441 PF03178 CPSF_A: CPSF A subuni 89.8 21 0.00045 34.9 17.8 102 7-115 98-202 (321)
442 PF10313 DUF2415: Uncharacteri 89.6 1.6 3.5E-05 28.3 5.4 31 142-172 1-34 (43)
443 PF07569 Hira: TUP1-like enhan 89.4 3.3 7.2E-05 38.1 9.8 80 93-181 18-105 (219)
444 PF10647 Gmad1: Lipoprotein Lp 89.2 20 0.00043 33.8 15.6 112 41-169 25-142 (253)
445 PF14583 Pectate_lyase22: Olig 89.2 25 0.00055 35.0 18.0 124 19-162 170-303 (386)
446 PF14870 PSII_BNR: Photosynthe 88.9 17 0.00038 35.1 14.6 110 38-162 143-253 (302)
447 TIGR02604 Piru_Ver_Nterm putat 88.9 27 0.00059 35.0 17.1 109 41-160 15-142 (367)
448 PHA02790 Kelch-like protein; P 88.7 12 0.00025 39.2 14.5 148 5-175 317-474 (480)
449 COG3204 Uncharacterized protei 88.7 23 0.00049 33.8 18.9 125 38-171 84-210 (316)
450 PF14655 RAB3GAP2_N: Rab3 GTPa 88.5 2.9 6.2E-05 42.3 9.3 79 1-82 313-407 (415)
451 PF00930 DPPIV_N: Dipeptidyl p 88.4 18 0.0004 35.9 15.2 143 1-160 189-346 (353)
452 KOG4499 Ca2+-binding protein R 88.4 4.2 9.2E-05 37.1 9.2 89 89-182 161-252 (310)
453 TIGR03074 PQQ_membr_DH membran 88.0 31 0.00067 38.2 17.5 173 7-181 260-487 (764)
454 KOG3630 Nuclear pore complex, 87.8 2.3 5E-05 47.2 8.5 143 3-160 108-262 (1405)
455 KOG2280 Vacuolar assembly/sort 87.7 29 0.00063 37.3 16.0 54 141-194 216-270 (829)
456 KOG2280 Vacuolar assembly/sort 86.2 14 0.0003 39.6 12.8 50 62-115 63-112 (829)
457 PF14870 PSII_BNR: Photosynthe 85.7 36 0.00078 33.0 15.5 146 3-168 152-301 (302)
458 PF05096 Glu_cyclase_2: Glutam 85.5 33 0.00071 32.4 14.3 131 15-160 108-249 (264)
459 PF11715 Nup160: Nucleoporin N 85.0 4.4 9.6E-05 43.1 9.2 41 142-182 215-259 (547)
460 PF10313 DUF2415: Uncharacteri 84.6 3 6.4E-05 27.1 4.6 31 86-116 1-34 (43)
461 PF03022 MRJP: Major royal jel 84.3 20 0.00043 34.5 12.4 146 18-172 35-216 (287)
462 PF07569 Hira: TUP1-like enhan 83.6 7.1 0.00015 35.9 8.7 86 149-256 18-103 (219)
463 TIGR02276 beta_rpt_yvtn 40-res 83.2 6.7 0.00014 24.8 6.2 35 5-39 1-36 (42)
464 KOG1900 Nuclear pore complex, 83.2 95 0.0021 35.8 18.2 161 61-249 97-273 (1311)
465 PF05935 Arylsulfotrans: Aryls 83.2 62 0.0014 33.7 16.4 153 16-183 127-313 (477)
466 PF07676 PD40: WD40-like Beta 82.8 4.6 0.0001 25.3 5.1 29 140-168 7-38 (39)
467 KOG4460 Nuclear pore complex, 82.6 35 0.00076 35.2 13.3 35 143-177 167-204 (741)
468 PF04126 Cyclophil_like: Cyclo 80.8 12 0.00026 30.7 8.1 101 358-490 1-113 (120)
469 PF07250 Glyoxal_oxid_N: Glyox 80.5 50 0.0011 30.8 14.8 154 65-258 48-207 (243)
470 PF12657 TFIIIC_delta: Transcr 79.8 34 0.00073 30.1 11.3 38 142-179 86-132 (173)
471 KOG2377 Uncharacterized conser 79.4 51 0.0011 33.4 13.0 145 13-175 39-189 (657)
472 TIGR03118 PEPCTERM_chp_1 conse 79.4 61 0.0013 31.2 19.8 180 1-181 28-289 (336)
473 KOG1897 Damage-specific DNA bi 79.3 1.1E+02 0.0025 34.2 24.0 69 329-409 908-977 (1096)
474 PF10168 Nup88: Nuclear pore c 79.0 65 0.0014 35.4 15.2 33 140-172 145-180 (717)
475 PF03022 MRJP: Major royal jel 78.7 27 0.00059 33.6 11.2 168 122-321 35-218 (287)
476 KOG1900 Nuclear pore complex, 78.4 1.2E+02 0.0027 35.0 17.0 86 83-172 176-273 (1311)
477 KOG2247 WD40 repeat-containing 78.4 0.44 9.4E-06 47.8 -1.3 141 2-165 41-182 (615)
478 COG4590 ABC-type uncharacteriz 78.0 21 0.00047 35.9 10.0 154 3-175 228-390 (733)
479 TIGR03548 mutarot_permut cycli 77.9 72 0.0016 31.1 14.4 53 63-116 139-195 (323)
480 PHA02790 Kelch-like protein; P 77.7 49 0.0011 34.5 13.6 106 6-117 271-386 (480)
481 KOG2377 Uncharacterized conser 77.1 89 0.0019 31.8 14.9 32 140-171 65-96 (657)
482 PF10214 Rrn6: RNA polymerase 76.4 1.2E+02 0.0025 34.0 16.6 170 1-236 151-325 (765)
483 PF08728 CRT10: CRT10; InterP 74.8 30 0.00065 37.5 10.9 106 6-114 113-245 (717)
484 PF12657 TFIIIC_delta: Transcr 74.3 21 0.00046 31.3 8.5 30 86-115 86-121 (173)
485 TIGR03606 non_repeat_PQQ dehyd 73.4 69 0.0015 33.0 12.8 51 1-51 35-90 (454)
486 PLN02193 nitrile-specifier pro 73.3 99 0.0021 32.2 14.4 26 6-31 228-258 (470)
487 PF10168 Nup88: Nuclear pore c 73.3 1.5E+02 0.0033 32.6 19.3 26 142-167 85-110 (717)
488 PF07995 GSDH: Glucose / Sorbo 73.0 1E+02 0.0022 30.4 17.1 106 1-108 7-136 (331)
489 TIGR02276 beta_rpt_yvtn 40-res 72.3 13 0.00027 23.4 5.0 30 151-180 1-31 (42)
490 PF15390 DUF4613: Domain of un 72.2 96 0.0021 32.7 13.2 113 1-116 62-187 (671)
491 PF14727 PHTB1_N: PTHB1 N-term 71.8 1.2E+02 0.0026 30.9 22.6 147 6-171 36-204 (418)
492 PF07676 PD40: WD40-like Beta 71.7 19 0.00041 22.4 5.6 30 83-112 6-38 (39)
493 PF13449 Phytase-like: Esteras 71.5 1.1E+02 0.0023 30.1 17.2 100 1-105 25-166 (326)
494 KOG1897 Damage-specific DNA bi 71.3 99 0.0022 34.6 13.7 135 18-171 751-898 (1096)
495 PF14269 Arylsulfotran_2: Aryl 70.9 42 0.00091 32.5 10.3 75 220-318 144-220 (299)
496 PLN02153 epithiospecifier prot 68.7 1.2E+02 0.0027 29.7 14.6 24 6-29 32-62 (341)
497 PF01436 NHL: NHL repeat; Int 68.3 15 0.00032 21.2 4.1 26 143-168 3-28 (28)
498 smart00036 CNH Domain found in 67.0 1.3E+02 0.0028 29.2 22.1 35 221-257 245-279 (302)
499 PRK10115 protease 2; Provision 64.4 2.3E+02 0.0049 31.2 23.2 107 2-114 133-254 (686)
500 PLN02153 epithiospecifier prot 62.7 1.6E+02 0.0035 28.9 15.7 25 6-30 85-114 (341)
No 1
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-99 Score=703.58 Aligned_cols=497 Identities=56% Similarity=0.906 Sum_probs=461.8
Q ss_pred CeEecCCCEEEEEeC-CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISN-DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~-D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++.|-||.+++|.+. |..++++|+++.++...+++...|+.++|+....+....+.++...++.+.++|-..+..+...
T Consensus 59 l~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 59 LAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred hhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 356789999999887 9999999999999999999999999999998877777678888889999999998865666666
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC-CCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH-TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
.-.-|.++|.++.++|.++.++|....|.|..|... .++.|...+.|.+|..+.++.+...++...++.|+|+|..+.+
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 667899999999999999999999999999999887 7888988899999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
-+.|.+||++++++|++++.+++........+.+ .|.+.+.+++||+++|+|++++.....++++||++|+||+|++
T Consensus 219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks---~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS---PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred cCcccEEEEEEeccchhhhhhhccchhhhhcccc---ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 9999999999999999999999887766665555 6789999999999999999999999999999999999999999
Q ss_pred ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 239 LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 239 ~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
..||||+|+.+|.+++++|++| ++||+++++||+....+.+.. ++.|+..+... .++||+++||+++++|||+| +
T Consensus 296 ~~gikvin~~tn~v~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~-~~~a~~np~~~-~~~dpt~~c~a~kk~rfylf--~ 370 (558)
T KOG0882|consen 296 ILGIKVINLDTNTVVRILGKDE-AIRFTRLSLYQGAQKSNLAAL-EVAASNNPLLE-FQKDPTIVCTAFKKNRFYLF--R 370 (558)
T ss_pred ceeEEEEEeecCeEEEEeccch-hhhhhhHHHHhhhhhccchhh-hhhhccCcccc-cCCCCeEEEeeeecceEEEE--e
Confidence 9999999999999999999999 999999999999865555544 88888866665 67999999999999999999 7
Q ss_pred CCCCCcccCCCcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCce
Q 010302 319 EPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLI 398 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~ 398 (513)
||+.++ +.||||||+|.++++..+.+.. -+...+..++|||++|+|.|.|||++||+||+||..+|+.|||||..
T Consensus 371 ep~~~~---~~~dvfne~p~~~~~~~~~~~~--g~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~ 445 (558)
T KOG0882|consen 371 EPEFTE---SDRDVFNEKPLKEELMEARQEE--GNKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHT 445 (558)
T ss_pred cCCCCc---chhhhhccCcChhHhhhhhhcc--CceecccceEEEecccceEEEecccccchhhhhhhccccCccccCcc
Confidence 787775 5689999999999999988644 56778899999999999999999999999999999999999999999
Q ss_pred EEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEE
Q 010302 399 FHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRV 478 (513)
Q Consensus 399 ~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V 478 (513)
||||+++||||+|||.|+|+||+++||..|+||+++.|+|++|++|+|||.|||+||||||||+.+.||||++|||||||
T Consensus 446 fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv 525 (558)
T KOG0882|consen 446 FHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRV 525 (558)
T ss_pred hHHhhhhheeecCCCCCCCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 010302 479 IKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510 (513)
Q Consensus 479 ~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v 510 (513)
+.||||+++|+++.+++++||++++.|.+++|
T Consensus 526 ~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 526 TAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred ecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 99999999999999999999999999999987
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-51 Score=319.08 Aligned_cols=157 Identities=54% Similarity=0.924 Sum_probs=152.9
Q ss_pred CCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCcccccc
Q 010302 355 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 434 (513)
Q Consensus 355 ~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 434 (513)
-.+..|.++|++|.|++|||-+.||+||+||.+|+++|||+|+.||||+++||||||||++.|.||.++||..|+||.+.
T Consensus 7 ~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~ 86 (164)
T KOG0881|consen 7 WQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHS 86 (164)
T ss_pred CCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 435 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 435 ~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
.|+|..+|.++||+.|||+|||||||||.+.+|||++|++||||+.||+|+.++..+.+|+.+||+.+++|.++.++
T Consensus 87 dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 87 DLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS 163 (164)
T ss_pred hhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765
No 3
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4.3e-46 Score=320.74 Aligned_cols=153 Identities=55% Similarity=1.007 Sum_probs=147.1
Q ss_pred CEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCC
Q 010302 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLR 437 (513)
Q Consensus 358 ~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 437 (513)
++|+|+|+.|+|+||||++.||++|+||++||+++||+|+.||||+|+|++||||+.+++.++.++|+..+++|....++
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~ 80 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLK 80 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCC
Confidence 56899999999999999999999999999999999999999999999999999999888888888899999999877889
Q ss_pred CCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 010302 438 HDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510 (513)
Q Consensus 438 ~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v 510 (513)
|+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|+.+|+|.+++|
T Consensus 81 ~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 81 HDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred cCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
No 4
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=2e-45 Score=319.03 Aligned_cols=154 Identities=50% Similarity=0.881 Sum_probs=148.6
Q ss_pred EEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCC
Q 010302 359 NVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRH 438 (513)
Q Consensus 359 ~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 438 (513)
+|+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|++|+||+.+++.++.++|+..+++|....++|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 37899999999999999999999999999999999999999999999999999999888899999999999998788899
Q ss_pred CCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 439 DRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 439 ~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|+++|+|.+|.|+.
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
No 5
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.8e-45 Score=315.41 Aligned_cols=148 Identities=83% Similarity=1.381 Sum_probs=142.7
Q ss_pred EEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCCC
Q 010302 361 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDR 440 (513)
Q Consensus 361 ~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 440 (513)
+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++|..+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 47999999999999999999999999999999999999999999999999999988889999999999999877899999
Q ss_pred ceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEE
Q 010302 441 PFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 508 (513)
Q Consensus 441 ~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~ 508 (513)
+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|+++|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 6
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-45 Score=309.45 Aligned_cols=149 Identities=56% Similarity=0.912 Sum_probs=134.6
Q ss_pred EEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCC-CCCCcccCCCCCccccccCCCC
Q 010302 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGD-GTGGQSIWGREFEDEFHKSLRH 438 (513)
Q Consensus 360 v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~-~~~~~~~~~~~~~~e~~~~~~~ 438 (513)
|+++|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+++||+|||||.+. +.+++ +.+|++|+ ....|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~-~~~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDEN-FALNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccc-ccccc
Confidence 789999999999999999999999999999999999999999999999999999876 77776 47889997 34445
Q ss_pred CC--ceEEEEeccC-CCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCC----CCcccCeEEEEEEEc
Q 010302 439 DR--PFTVSMANAG-PNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN----DKPYQDVKILNVTVP 511 (513)
Q Consensus 439 ~~--~g~v~~~~~~-~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~----~~p~~~i~I~~~~v~ 511 (513)
.+ +|+||||+.+ |++++|||||++.++|+||++|+|||+|++|||+|++|++..+... +.|..+++|.++.++
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 55 7999999999 9999999999999999999999999999999999999999888754 456788999988775
Q ss_pred c
Q 010302 512 K 512 (513)
Q Consensus 512 ~ 512 (513)
+
T Consensus 158 ~ 158 (158)
T COG0652 158 E 158 (158)
T ss_pred C
Confidence 3
No 7
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-46 Score=344.57 Aligned_cols=148 Identities=56% Similarity=0.893 Sum_probs=141.8
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhhcc-----------ccCCceEEEeEeCcEEEeccC-CCCCCCCcccCCCCCccc
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDE 431 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~~~-----------~y~~~~~~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e 431 (513)
-+.|||+||||.|.||+||+||+.||++. .|+|+.||||+++|||||||. .++|+||++|||..|+||
T Consensus 20 e~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~FdDE 99 (372)
T KOG0546|consen 20 EPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKFDDE 99 (372)
T ss_pred cccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccccccc
Confidence 46799999999999999999999999753 499999999999999999998 688999999999999999
Q ss_pred cccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 432 FHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 432 ~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
. +.++|++||+|||||.|||+||||||||+.++|||||+|+|||+|+.|++||+.|+++.+|..++|+.+|+|.+|+.+
T Consensus 100 n-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel 178 (372)
T KOG0546|consen 100 N-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGEL 178 (372)
T ss_pred c-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEecccccc
Confidence 8 899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 010302 512 K 512 (513)
Q Consensus 512 ~ 512 (513)
.
T Consensus 179 ~ 179 (372)
T KOG0546|consen 179 V 179 (372)
T ss_pred c
Confidence 4
No 8
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=283.88 Aligned_cols=154 Identities=52% Similarity=0.907 Sum_probs=150.1
Q ss_pred CEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCC
Q 010302 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLR 437 (513)
Q Consensus 358 ~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 437 (513)
++|+++|+.|+|.||||.+.+|++|+||+.+|...||+++.|||-+|+|++|+|++...|.||.++||.+|+||+...|+
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lk 80 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCC-CCcccCeEEEEEEEc
Q 010302 438 HDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN-DKPYQDVKILNVTVP 511 (513)
Q Consensus 438 ~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~-~~p~~~i~I~~~~v~ 511 (513)
|+.+|+|+||+.||++++|||||+.+..|+||-+|++||+|++|+|+|++|+++++++. .||+.++.|.+++|-
T Consensus 81 h~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih 155 (161)
T KOG0884|consen 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155 (161)
T ss_pred hccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999965 899999999999873
No 9
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=309.53 Aligned_cols=145 Identities=59% Similarity=0.929 Sum_probs=138.8
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhhcc----ccCCceEEEeEeCcEEEeccC-CCCCCCCcccCCCCCccccccCCCC
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCRNE----YYNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKSLRH 438 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~~~----~y~~~~~~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~~~~ 438 (513)
-..|||+|+||++.+|+||+||++||.++ -|.|+.||||+|||||||||. .++++|+.++||..|+||. ..|+|
T Consensus 51 ~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DEN-f~LkH 129 (217)
T KOG0880|consen 51 EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDEN-FKLKH 129 (217)
T ss_pred EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCcc-ceeec
Confidence 56789999999999999999999999843 399999999999999999998 4679999999999999998 89999
Q ss_pred CCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 010302 439 DRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 509 (513)
Q Consensus 439 ~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~ 509 (513)
++||.||||+.|||+||||||||+...+||||+|+|||+|++|||+|.+|+.+++|.+++|+++++|.+|.
T Consensus 130 ~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g 200 (217)
T KOG0880|consen 130 DRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCG 200 (217)
T ss_pred CCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 10
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-46 Score=340.26 Aligned_cols=158 Identities=51% Similarity=0.868 Sum_probs=154.0
Q ss_pred CCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccc
Q 010302 354 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFH 433 (513)
Q Consensus 354 ~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 433 (513)
++-..+|.|.|+.|.|.|||+.+.+|.+|+||++||+.|||+|+.|||.|+|||||||||++.|.||+++||.+|.||+.
T Consensus 274 vKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~ 353 (518)
T KOG0883|consen 274 VKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFC 353 (518)
T ss_pred ccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 434 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 434 ~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
+.|.|+.+|+|+|||+|||+|||||||++.++.+||++||+||||+.|+++|.+|+++++|++++|+++|+|.++.|.
T Consensus 354 ~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 354 SNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF 431 (518)
T ss_pred CCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998763
No 11
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.4e-44 Score=307.34 Aligned_cols=146 Identities=58% Similarity=0.985 Sum_probs=139.8
Q ss_pred EEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCCC
Q 010302 361 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDR 440 (513)
Q Consensus 361 ~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 440 (513)
+|+|+.|+|+||||++.||++|+||++||+++||+++.||||+|+|++|||++.+++.++.++|+..+++|....++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 47899999999999999999999999999999999999999999999999999888888888899999999878899999
Q ss_pred ceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 010302 441 PFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 507 (513)
Q Consensus 441 ~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~ 507 (513)
+|+|+|++.+|++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 999999999999999999999999999999999999999999999999999998 789999999963
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1e-43 Score=311.04 Aligned_cols=152 Identities=45% Similarity=0.793 Sum_probs=141.8
Q ss_pred EEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCC-------CCCccccc
Q 010302 361 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWG-------REFEDEFH 433 (513)
Q Consensus 361 ~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~-------~~~~~e~~ 433 (513)
+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+++|+|||||+.+++.++.++|+ ..+++|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 47899999999999999999999999999999999999999999999999999888877776654 35677877
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEEEEecC-CCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 434 KSLRHDRPFTVSMANAGPNTNGSQFFITTVA-TPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 434 ~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~-~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
..++|+++|+|+||+.++++++|||||++.+ +|+||++|+|||||++|||||++|++++++++++|+++|+|.+|+|+.
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 7889999999999999999999999999986 799999999999999999999999999999999999999999999975
No 13
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.4e-42 Score=304.61 Aligned_cols=158 Identities=48% Similarity=0.806 Sum_probs=149.5
Q ss_pred CCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCcccccc
Q 010302 355 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 434 (513)
Q Consensus 355 ~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 434 (513)
....+|+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|++|||++.+++.++.++|+..+++|...
T Consensus 3 ~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~ 82 (171)
T cd01925 3 PTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHS 82 (171)
T ss_pred CcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCccccc
Confidence 34567999999999999999999999999999999999999999999999999999999988899999999999999877
Q ss_pred CCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEE-cCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 435 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI-KGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 435 ~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~-~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
.++|+++|+|+|++.++++++|||||+++++|+||++|+|||||+ ++|++|++|++++++++++|+++|+|.+|.|+.
T Consensus 83 ~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 83 RLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred CcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 888999999999999999999999999999999999999999999 468899999999999999999999999999864
No 14
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-43 Score=274.38 Aligned_cols=145 Identities=50% Similarity=0.819 Sum_probs=140.5
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhhccc--------cCCceEEEeEeCcEEEeccC-CCCCCCCcccCCCCCcccccc
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHK 434 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~--------y~~~~~~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~ 434 (513)
++.|+|.||||.+.+|+|++||++.|++.| |+++.||||+++|||||||. .++|+|..++|+..|+||. .
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DEN-F 100 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDEN-F 100 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCcc-e
Confidence 678999999999999999999999999887 99999999999999999997 7889999999999999998 8
Q ss_pred CCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 010302 435 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 509 (513)
Q Consensus 435 ~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~ 509 (513)
.|+|+.||+++||++|++++|.|||||...+.+||++|+|||||++|+.++++|+.+++..++||+-+|.|..|+
T Consensus 101 tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCG 175 (177)
T KOG0879|consen 101 TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCG 175 (177)
T ss_pred eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885
No 15
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=9.4e-41 Score=289.97 Aligned_cols=150 Identities=41% Similarity=0.649 Sum_probs=131.3
Q ss_pred EEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCC
Q 010302 360 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHD 439 (513)
Q Consensus 360 v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 439 (513)
|+|+|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+|+|+||||++... .+ ...++..+++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CC-cCCCCCCcCCcccccccC-
Confidence 689999999999999999999999999999999999999999999999999986422 11 122456788887666666
Q ss_pred CceEEEEeccC-CCCCCceEEEEecCCCCCC-------C-CCeEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeEEE
Q 010302 440 RPFTVSMANAG-PNTNGSQFFITTVATPWLD-------N-KHTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKIL 506 (513)
Q Consensus 440 ~~g~v~~~~~~-~~~~~s~f~i~~~~~~~ld-------~-~~~vfG~V~~G~~~l~~i~~~~~~~----~~~p~~~i~I~ 506 (513)
++|+||||+.+ |++++|||||++.++++|| + +|+|||||++|||||++|+++++++ +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 67999999875 9999999999999998876 3 7999999999999999999999986 36999999999
Q ss_pred EEEEcc
Q 010302 507 NVTVPK 512 (513)
Q Consensus 507 ~~~v~~ 512 (513)
+++|.+
T Consensus 159 ~~~i~~ 164 (164)
T PRK10791 159 SVTVSE 164 (164)
T ss_pred EEEEeC
Confidence 998864
No 16
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.7e-40 Score=294.77 Aligned_cols=155 Identities=34% Similarity=0.534 Sum_probs=136.0
Q ss_pred CCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCcccccc
Q 010302 355 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 434 (513)
Q Consensus 355 ~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 434 (513)
.....|+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|++|||++.+...+ ..++.++++|...
T Consensus 26 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~~ 103 (190)
T PRK10903 26 KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEADN 103 (190)
T ss_pred CCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCcccc
Confidence 34557999999999999999999999999999999999999999999999999999997654221 2235678888655
Q ss_pred CCCCCCceEEEEeccC-CCCCCceEEEEecCCCCCCC-----CCeEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeE
Q 010302 435 SLRHDRPFTVSMANAG-PNTNGSQFFITTVATPWLDN-----KHTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVK 504 (513)
Q Consensus 435 ~~~~~~~g~v~~~~~~-~~~~~s~f~i~~~~~~~ld~-----~~~vfG~V~~G~~~l~~i~~~~~~~----~~~p~~~i~ 504 (513)
.+ |+.+|+|+|++.+ +++++|||||+++++++||+ +|+|||+|++|||||++|+++++++ +++|.++|+
T Consensus 104 ~l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~ 182 (190)
T PRK10903 104 GL-RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV 182 (190)
T ss_pred cC-cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeE
Confidence 55 4567999999865 99999999999999999984 8999999999999999999999976 579999999
Q ss_pred EEEEEEcc
Q 010302 505 ILNVTVPK 512 (513)
Q Consensus 505 I~~~~v~~ 512 (513)
|.+|+|++
T Consensus 183 I~~~~v~~ 190 (190)
T PRK10903 183 ILSAKVLP 190 (190)
T ss_pred EEEEEEeC
Confidence 99999874
No 17
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.6e-40 Score=301.83 Aligned_cols=155 Identities=26% Similarity=0.343 Sum_probs=139.9
Q ss_pred CCCCEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhhcc-----------ccCCceEEEeEeC-cEEEeccCCCCC
Q 010302 355 SLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKG-FMIQTGDPLGDG 417 (513)
Q Consensus 355 ~~~~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~~~-----------~y~~~~~~rv~~~-~~iq~G~~~~~~ 417 (513)
.....|.|+++ .|+|+||||.+.||+||+||+.||++. +|+|+.||||+++ |+||+||+.+.
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~- 128 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF- 128 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC-
Confidence 34556888876 567999999999999999999999753 3999999999986 89999998643
Q ss_pred CCCcccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCC
Q 010302 418 TGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKND 497 (513)
Q Consensus 418 ~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~ 497 (513)
+.+++|..|++|. ..++|+++|+|+|++.+|++++||||||+.++|+||++|+|||+|++||+||++|+++++++++
T Consensus 129 --g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~g 205 (249)
T PTZ00221 129 --NVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVG 205 (249)
T ss_pred --CccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCC
Confidence 4456788899996 5788999999999999999999999999999999999999999999999999999999999889
Q ss_pred CcccCeEEEEEEEccC
Q 010302 498 KPYQDVKILNVTVPKS 513 (513)
Q Consensus 498 ~p~~~i~I~~~~v~~~ 513 (513)
+|+.+|+|.+|++++|
T Consensus 206 rP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 206 RPLLPVTVSFCGALTG 221 (249)
T ss_pred CCCCCeEEEECeEecC
Confidence 9999999999999875
No 18
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2.6e-40 Score=293.02 Aligned_cols=146 Identities=51% Similarity=0.813 Sum_probs=136.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHhhhccc--------cCCceEEEeEeCcEEEeccC-CCCCCCCcccCCCCCccccccC
Q 010302 365 TMGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 365 ~~G~i~i~l~~~~~P~~~~~f~~l~~~~~--------y~~~~~~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
+.|+|+||||.+.||++|+||++||++++ |+++.||||+|+|+|||||+ .+++.++.++|+..|++|. ..
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~-~~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDEN-FI 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCcc-cc
Confidence 57999999999999999999999998655 99999999999999999997 4678888888998998886 56
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEE-cCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI-KGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~-~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
++|.++|+|+|++.++++++|||||++.++|+||++|+|||||+ +||+||++|++++++++++|+++|+|.+|++.
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 78999999999999999999999999999999999999999999 79999999999999999999999999999863
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=6.7e-40 Score=286.64 Aligned_cols=144 Identities=56% Similarity=0.897 Sum_probs=134.9
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhhc--c------ccCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCCCcccccc
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCRN--E------YYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREFEDEFHK 434 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~~--~------~y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~~~e~~~ 434 (513)
++.|+|+||||++.||++|+||++||++ + +|+++.||||+|+|+||+||+. +++.++.++|+..+++|. .
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~-~ 90 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDEN-F 90 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCC-c
Confidence 5899999999999999999999999984 4 8999999999999999999974 667788888998898885 6
Q ss_pred CCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 010302 435 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 509 (513)
Q Consensus 435 ~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~ 509 (513)
.++|.++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|+++|+|.+|+
T Consensus 91 ~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 91 KLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred cccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 789999999999999999999999999999999999999999999999999999999998 89999999999984
No 20
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2.1e-39 Score=287.20 Aligned_cols=146 Identities=53% Similarity=0.849 Sum_probs=135.5
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhh---------ccccCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCCCccccc
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCR---------NEYYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREFEDEFH 433 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~---------~~~y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~~~e~~ 433 (513)
++.|+|+||||.+.||++|+||++||+ .++|+|+.||||+|+++|||||+. +.+.++.+.|+..+++|.
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~- 105 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDEN- 105 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCcc-
Confidence 467999999999999999999999996 469999999999999999999975 567788888898898885
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 434 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 434 ~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
..++|.++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+++++. +++|.++|+|++|+++
T Consensus 106 ~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 106 FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL 182 (183)
T ss_pred ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcCCeEEEEeEEc
Confidence 6789999999999999999999999999999999999999999999999999999999884 6899999999999986
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.9e-39 Score=279.31 Aligned_cols=144 Identities=41% Similarity=0.579 Sum_probs=126.4
Q ss_pred EEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCCCc
Q 010302 362 LHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRP 441 (513)
Q Consensus 362 ~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 441 (513)
|+|+.|+|+|+||++.||++|+||++||+.+||+|+.||||+|+|++|||++.....+. .++.++++|....+ |+++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~--~~~~~~~~e~~~~~-~~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK--ETLKPIKNEAGNGL-SNTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc--ccCCcccCcccccc-cCCc
Confidence 78999999999999999999999999999999999999999999999999986544332 23566777764444 4577
Q ss_pred eEEEEeccC-CCCCCceEEEEecCCCCCCC-----CCeEEEEEEcCHHHHHHHhcCCCCCC----CCcccCeEEEEE
Q 010302 442 FTVSMANAG-PNTNGSQFFITTVATPWLDN-----KHTVFGRVIKGMDVVQAIEKVKTDKN----DKPYQDVKILNV 508 (513)
Q Consensus 442 g~v~~~~~~-~~~~~s~f~i~~~~~~~ld~-----~~~vfG~V~~G~~~l~~i~~~~~~~~----~~p~~~i~I~~~ 508 (513)
|+||||+.+ |++++|||||+++++|+||+ +|+|||+|++|||||++|++++++.+ ++|+.+|+|.++
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 999999875 89999999999999999995 79999999999999999999999864 689999998763
No 22
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=299.42 Aligned_cols=160 Identities=48% Similarity=0.817 Sum_probs=154.0
Q ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccc
Q 010302 352 VTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDE 431 (513)
Q Consensus 352 ~~~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e 431 (513)
.++....+|++.|+.|+|.||||+.+||++|.||++||-.|||+|+.|||++|+|++|||||+++|+||+++||.+|.+|
T Consensus 7 ~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE 86 (439)
T KOG0885|consen 7 LEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADE 86 (439)
T ss_pred cCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhh
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEc-CHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 010302 432 FHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIK-GMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510 (513)
Q Consensus 432 ~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~-G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v 510 (513)
++++|++.++|+|+||+.+.+.|||||||||+++|+|+++|++||+|+. -...+.+|..+.++.+.||..+-+|.++.|
T Consensus 87 ~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV 166 (439)
T KOG0885|consen 87 FHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEV 166 (439)
T ss_pred cCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEe
Confidence 9999999999999999999999999999999999999999999999995 688889999999999999999999999998
Q ss_pred c
Q 010302 511 P 511 (513)
Q Consensus 511 ~ 511 (513)
+
T Consensus 167 ~ 167 (439)
T KOG0885|consen 167 L 167 (439)
T ss_pred e
Confidence 6
No 23
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=288.88 Aligned_cols=155 Identities=45% Similarity=0.788 Sum_probs=148.6
Q ss_pred CEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCC-------CCCcc
Q 010302 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWG-------REFED 430 (513)
Q Consensus 358 ~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~-------~~~~~ 430 (513)
+.|+|+|++|+|+|+||.+++|.+|.||++||+-.||+.|.||-|..+|.+|+|||+|+|.||.++|+ ..|+.
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEA 80 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999985 34788
Q ss_pred ccccCCCCCCceEEEEeccCCCCCCceEEEEecCCC-CCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 010302 431 EFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATP-WLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 509 (513)
Q Consensus 431 e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~-~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~ 509 (513)
|+.+.++|...|+|+|++.|.+.+||||||||+++- +||++|+|||+|+||||+|.+|+.+-+|++++|+++|+|.+..
T Consensus 81 E~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 81 EFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTI 160 (479)
T ss_pred hhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeE
Confidence 999999999999999999999999999999999875 8999999999999999999999999999999999999999999
Q ss_pred Ecc
Q 010302 510 VPK 512 (513)
Q Consensus 510 v~~ 512 (513)
||.
T Consensus 161 iLd 163 (479)
T KOG0415|consen 161 ILD 163 (479)
T ss_pred Eec
Confidence 875
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.1e-37 Score=269.59 Aligned_cols=146 Identities=58% Similarity=0.869 Sum_probs=134.4
Q ss_pred EEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCCC
Q 010302 361 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDR 440 (513)
Q Consensus 361 ~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 440 (513)
+++|+.|+|+|+||++.||++|+||++||+.++|+|+.|||++|++++|+|++...+.++ ..++..+++|......|.+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 378999999999999999999999999999999999999999999999999987654432 3456788999877776888
Q ss_pred ceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 010302 441 PFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 507 (513)
Q Consensus 441 ~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~ 507 (513)
+|+|+|++.+++++++||||++.++|+||++|+|||||++||++|++|++++++++++|+++|+|.+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 9999999999999999999999999999999999999999999999999999998999999999963
No 25
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.9e-36 Score=265.86 Aligned_cols=140 Identities=33% Similarity=0.540 Sum_probs=118.9
Q ss_pred EeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCC---------------------Cc
Q 010302 363 HTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG---------------------GQ 421 (513)
Q Consensus 363 ~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~---------------------~~ 421 (513)
.|+.|+|+|+||++.||+||+||++||+.+||+++.||||+++||+|||++.+.+.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 489999999999999999999999999999999999999999999999999755322 23
Q ss_pred ccCCCCCc----cccccCCCCCCceEEEEeccC--CCCCCceEEEEec-------CCCCCCCCCeEEEEEEcCHHHHHHH
Q 010302 422 SIWGREFE----DEFHKSLRHDRPFTVSMANAG--PNTNGSQFFITTV-------ATPWLDNKHTVFGRVIKGMDVVQAI 488 (513)
Q Consensus 422 ~~~~~~~~----~e~~~~~~~~~~g~v~~~~~~--~~~~~s~f~i~~~-------~~~~ld~~~~vfG~V~~G~~~l~~i 488 (513)
++|+..++ ++....++|+.+|+|||++.+ |++++|||||+++ ++|+||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 45554432 233355677888999999987 7999999999998 7899999999999999999999999
Q ss_pred hcCCCCCCCCcccCeEEEEEEEccC
Q 010302 489 EKVKTDKNDKPYQDVKILNVTVPKS 513 (513)
Q Consensus 489 ~~~~~~~~~~p~~~i~I~~~~v~~~ 513 (513)
+.. + .|.+++|++|
T Consensus 163 ~~g----------d-~i~~~~~~~~ 176 (176)
T cd01924 163 KVG----------D-KIESARVVEG 176 (176)
T ss_pred cCC----------C-EEEEEEEecC
Confidence 754 2 4778888765
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-37 Score=261.40 Aligned_cols=151 Identities=49% Similarity=0.779 Sum_probs=140.4
Q ss_pred CEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhc--cc-cCCceEEEeEeCcEEEeccC-CCCCCCCcccCCCCCccccc
Q 010302 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRN--EY-YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFH 433 (513)
Q Consensus 358 ~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~--~~-y~~~~~~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~ 433 (513)
+.-+-+-..|+|+++|..+..|+|++||..||.+ || |+|+.||||+|.||+||||. .++|+||.++||..|.||.
T Consensus 142 ~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdden- 220 (298)
T KOG0111|consen 142 DIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDEN- 220 (298)
T ss_pred heeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccc-
Confidence 3444556889999999999999999999999975 45 99999999999999999998 5789999999999999998
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 010302 434 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510 (513)
Q Consensus 434 ~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v 510 (513)
..|+|..+|+|+||++|+|+|||||||++....|||++|+|||.|++||+||++++++.+ +.|+|...|+|..|+=
T Consensus 221 f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~~cge 296 (298)
T KOG0111|consen 221 FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIVECGE 296 (298)
T ss_pred eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEEeccc
Confidence 899999999999999999999999999999999999999999999999999999999987 5699999999999863
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=7.2e-36 Score=261.25 Aligned_cols=149 Identities=51% Similarity=0.808 Sum_probs=132.4
Q ss_pred EEEEEeC-CeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCc--ccCCCCCcccccc-
Q 010302 359 NVILHTT-MGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQ--SIWGREFEDEFHK- 434 (513)
Q Consensus 359 ~v~~~t~-~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~--~~~~~~~~~e~~~- 434 (513)
.|.|+|+ .|+|+||||++.||++|+||++||+.++|+|+.|||++|++++|+|++.+.+..+. ...+..+++|...
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 4789996 99999999999999999999999999999999999999999999999876544111 2234568888853
Q ss_pred CCCCCCceEEEEeccC--CCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 010302 435 SLRHDRPFTVSMANAG--PNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510 (513)
Q Consensus 435 ~~~~~~~g~v~~~~~~--~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v 510 (513)
.+.| ++|+|+|++.+ +++++|||||+|+++|+||++|+|||+|++||++|++|++++++. +|.++|+|.+|+|
T Consensus 81 ~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 81 LLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred cccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 4556 78999999986 889999999999999999999999999999999999999999877 9999999999987
No 28
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=267.08 Aligned_cols=282 Identities=18% Similarity=0.180 Sum_probs=221.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-cceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~-~~i~ 79 (513)
++|||+|.+||||+.|.++|+||+.+..+..+. .+|...+.+++|+||++ .++||+.||+|++||.+ ++ +...
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~--KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwdpk--tg~~~g~ 194 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC--KGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWDPK--TGQQIGR 194 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceee--cCCccEEEEEEECCCcc--hhhccccCCeEEEecCC--CCCcccc
Confidence 479999999999999999999999987766654 48999999999999999 99999999999999987 44 4556
Q ss_pred EeecCCCCeEEEEEcC-----CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 80 SKKVHMGPVKVMRYNP-----VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
.+.+|...|++++|.| ..++|+|++.||.++|||+.. ++++..+.+|...|+|++|-.+|
T Consensus 195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--------------~~~~~~lsgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--------------GTCVRTLSGHTASVTCVRWGGEG- 259 (480)
T ss_pred cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC--------------ceEEEEeccCccceEEEEEcCCc-
Confidence 7889999999999986 457899999999999999865 56788899999999999995444
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccc-----------------------------------c
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR-----------------------------------L 199 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~-----------------------------------l 199 (513)
+|.+||.|++|++|+...|++.+.+.+|...+..+..+.+-.+. +
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 88999999999999999999999999987766555444220000 0
Q ss_pred ccccccceeeeeeecccc--------CCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheecc
Q 010302 200 EAIDFGRRMAVEKEIEKT--------ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIAL 270 (513)
Q Consensus 200 ~~~~~~~r~~~e~e~~~~--------~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~ 270 (513)
-+...+-.+.+.+..+.+ ...-++.+.|+|++++|++++++. ||+||..+|+.+..+.+|- -++
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv-------~~V 412 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV-------AAV 412 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc-------cee
Confidence 000111112222222211 123456889999999999999885 9999999999999987654 234
Q ss_pred ccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCcccCCCcC
Q 010302 271 YQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRD 331 (513)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~~~~~~~ 331 (513)
||- +| ..|..|++||++|..+.+|.-+.....++++++.|
T Consensus 413 Yqv--------------------aw-saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 413 YQV--------------------AW-SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred EEE--------------------Ee-ccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 441 22 37899999999999999999887776666666544
No 29
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-34 Score=266.91 Aligned_cols=269 Identities=16% Similarity=0.125 Sum_probs=225.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.||+|++.|||||.+|.+++|+..+...+..+. +|...+..+.|+|.....-+++|+.||++++|++. +..++..
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~--~e~~l~~ 256 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS--QETPLQD 256 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCCcceeEEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccC--CCcchhh
Confidence 3689999999999999999999999887666655 99999999999998655689999999999999997 6689999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|..++|+|+|++|+|++.|.+-++||+++ ...+....+|...|.+++|+|||..++||+
T Consensus 257 l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t--------------k~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET--------------KSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred hhcchhhheeeeecCCCceeeecccccchhhccccc--------------chhhHhhcccccccceeEecCCCceeeccC
Confidence 999999999999999999999999999999999988 455777889999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----ecc--ccCCCCCCceEEcC-CCC
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EIE--KTETAPPSNAIFDE-SSN 232 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~~--~~~~~~~~~i~fd~-~g~ 232 (513)
.|..-||||+++|+++..+++|...+..+.|+++..........+ ...+++ ++- .....-++.+.|+| .|+
T Consensus 323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC-cEEEeeecccccceecccccchhhheEecccCCe
Confidence 999999999999999999999999999999999854433332222 122211 100 01123456789998 999
Q ss_pred EEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCce
Q 010302 233 FLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHR 311 (513)
Q Consensus 233 ~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~ 311 (513)
||++++++. ++||...+.++++.+.+|++. ++.+. . .+|+..++|++.|+.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k--V~s~D---------------i-----------s~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGK--VISLD---------------I-----------SPDSQAIATSSFDRT 453 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccc--eEEEE---------------e-----------ccCCceEEEeccCce
Confidence 999999886 999999999999999888842 22222 2 278888999999999
Q ss_pred EEEEe
Q 010302 312 IYLFS 316 (513)
Q Consensus 312 i~i~~ 316 (513)
|.+|+
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99995
No 30
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=253.75 Aligned_cols=248 Identities=17% Similarity=0.164 Sum_probs=203.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCC---cceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDV---KAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~---~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
|+|||||+.||||+.||+|++||-++++.+-. .+.+|...|.+++|.|-. ..-.+++++.|+.++|||+. .+++
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~--~~~~ 239 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK--LGTC 239 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc--CceE
Confidence 58999999999999999999999999887543 467899999999997632 22289999999999999998 7889
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc-----------------------------------
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES----------------------------------- 122 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~----------------------------------- 122 (513)
+..+.+|+.+|+|+.|--+| +++|+|.|++|++|+...+.+-..
T Consensus 240 ~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred EEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChH
Confidence 99999999999999996444 899999999999997655433100
Q ss_pred -----------------------------ceeeeec-CCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010302 123 -----------------------------EVSFRLK-SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 123 -----------------------------~~~~~~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t 172 (513)
.+.|+.. ..+++....+|..-|+.+.||||++++|++|-|..|++||.++
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 1223322 3446667788999999999999999999999999999999999
Q ss_pred CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCc
Q 010302 173 GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNK 251 (513)
Q Consensus 173 g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~ 251 (513)
|+.+.++.+|...+ -.++|+.+.++|++++.+ .+|||++.+.+
T Consensus 399 Gk~lasfRGHv~~V------------------------------------YqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 399 GKFLASFRGHVAAV------------------------------------YQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred cchhhhhhhcccee------------------------------------EEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 99999998877542 367899999999999876 59999999999
Q ss_pred EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 252 VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 252 ~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
+..-+-+|+- .+.++++ .+|+..+|+|++|+-+++|.
T Consensus 443 l~~DLpGh~D-----------------EVf~vDw-----------spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHAD-----------------EVFAVDW-----------SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCc-----------------eEEEEEe-----------cCCCceeecCCCceEEEeec
Confidence 9888865441 1223333 39999999999999999995
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-31 Score=235.63 Aligned_cols=235 Identities=14% Similarity=0.179 Sum_probs=205.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC--c--eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY--D--MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~--~--~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
.+|||.|+++|.|+.|....||++.+. + ......+.+|.+-+.++.|.+++ .+++++.|.+..+||++ +++
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~---~ilT~SGD~TCalWDie--~g~ 177 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN---HILTGSGDMTCALWDIE--TGQ 177 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC---ceEecCCCceEEEEEcc--cce
Confidence 379999999999999999999999854 2 12333467899999999998865 58899999999999998 999
Q ss_pred ceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 77 PLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
.+..+.+|.+.|.++.++| +++.|+||+.|++.++||++. +.+.+.|.+|..-|++++|.|+|.-
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~--------------~~c~qtF~ghesDINsv~ffP~G~a 243 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS--------------GQCVQTFEGHESDINSVRFFPSGDA 243 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC--------------cceeEeecccccccceEEEccCCCe
Confidence 9999999999999999999 999999999999999999988 5668999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
|++||.|++.|+||++..+.+.+|... ....++++++|+.+|++|.
T Consensus 244 fatGSDD~tcRlyDlRaD~~~a~ys~~----------------------------------~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRADQELAVYSHD----------------------------------SIICGITSVAFSKSGRLLF 289 (343)
T ss_pred eeecCCCceeEEEeecCCcEEeeeccC----------------------------------cccCCceeEEEcccccEEE
Confidence 999999999999999999998887521 2234678999999999999
Q ss_pred Eccc-cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 236 YATL-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 236 ~~s~-~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
.+.. .++.|||.-.++.+.++.+|++.+..+.+ .+|++.+|||+-|..+.|
T Consensus 290 agy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~----------------------------s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV----------------------------SPDGMAVATGSWDSTLRI 341 (343)
T ss_pred eeecCCceeEeeccccceEEEeeccCCeeEEEEE----------------------------CCCCcEEEecchhHheee
Confidence 9754 46999999999999999998854433333 389999999999999999
Q ss_pred Ee
Q 010302 315 FS 316 (513)
Q Consensus 315 ~~ 316 (513)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
No 32
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=2.9e-30 Score=229.55 Aligned_cols=239 Identities=16% Similarity=0.150 Sum_probs=195.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+..++||++.+++|.|+++++||+.+++..+.+. +|...+.+++++++.. .+++|+.|++|++|+. -+.+..+
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~--GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt---~g~ck~t 141 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFV--GHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNT---LGVCKYT 141 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEE--ecCCceEEEEecCCCc--eeecCCCcceeeeeee---cccEEEE
Confidence 4679999999999999999999999997666655 8999999999999998 8999999999999999 4667777
Q ss_pred eecC--CCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 81 KKVH--MGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 81 ~~~h--~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
+..+ +..|+|+.|+|+ ..+|++++.|+++++||+++. +....+.+|.+.++.+++||||...
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~--------------~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC--------------QLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc--------------chhhccccccccEEEEEECCCCCEE
Confidence 7643 789999999997 678999999999999999884 3466788899999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
++|+.||.+.+||++.++.++.++. ...+.+++|+|+.-.|+.
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~a-------------------------------------~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLEA-------------------------------------FDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred ecCCCCceEEEEEccCCceeEeccC-------------------------------------CCeEeeEEecCCceeEee
Confidence 9999999999999999999887753 124568899999999999
Q ss_pred ccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 237 ATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 237 ~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
++..+|+|||+.++.++..+.-+..+. + .....+. .....|. .|+.-+-+|+.++-|.+|-
T Consensus 251 at~~sIkIwdl~~~~~v~~l~~d~~g~-----s-----~~~~~~~--------clslaws-~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 251 ATATSIKIWDLESKAVVEELKLDGIGP-----S-----SKAGDPI--------CLSLAWS-ADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ccCCceEEEeccchhhhhhcccccccc-----c-----cccCCcE--------EEEEEEc-CCCcEEEeeecCCcEEEEE
Confidence 988899999999999998875433111 0 0000111 2223343 4555566789999999994
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.9e-29 Score=253.41 Aligned_cols=253 Identities=19% Similarity=0.259 Sum_probs=209.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.||++|++|++++.|+.+++|+..+.+......+..|...|..++|++++. ++++++.|++|+|||+. ..+..+++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~-~~~~~~~~ 241 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK-DDGRNLKT 241 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc-CCCeEEEE
Confidence 4799999999999999999999997766212223367889999999999999 99999999999999993 36689999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|++++|+|+++++++|+.|++|+|||+++ +++...+..|...|.+++|++++++|++++
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--------------~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--------------GECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--------------CeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 999999999999999999999999999999999987 566888999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeE--EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 161 PDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
.|+.|++||+.+++. +..+.++. ... ++..+.|+|+|.+++.++
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~---------------------------------~~~-~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAE---------------------------------NSA-PVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCC---------------------------------CCC-ceeEEEECCCCcEEEEec
Confidence 999999999999984 44433211 111 567899999999999999
Q ss_pred cc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 239 LL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 239 ~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
.+ .+++||+..+++++.+..+.... ...|... ..+++.++.+|++|+.|++|..
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLV----RCIFSPT---------------------LSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcc----eeEeccc---------------------ccCCCCeEEEEeCCceEEEEeC
Confidence 88 59999999999999987766331 1111110 0267888999999999999998
Q ss_pred CCCCCCcccCCC
Q 010302 318 REPEEPEDATKG 329 (513)
Q Consensus 318 ~~~~~~~~~~~~ 329 (513)
.+........++
T Consensus 409 ~s~~~~~~l~~h 420 (456)
T KOG0266|consen 409 SSGGILQRLEGH 420 (456)
T ss_pred CccchhhhhcCC
Confidence 876655544444
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.1e-29 Score=254.85 Aligned_cols=238 Identities=18% Similarity=0.202 Sum_probs=205.3
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCcee-----------------------------EEEEcCCCCCcEEEEEEcCCCc
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMM-----------------------------LMIRLPFIPGAVEWVYKQGDVK 52 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~-----------------------------~~~~l~~~~~~v~~v~~s~~~~ 52 (513)
.||+|+.+||.|-.|..|++|.+...++. ....+-+|.++|..++|+|+.+
T Consensus 385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~r 464 (707)
T KOG0263|consen 385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRR 464 (707)
T ss_pred eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccccc
Confidence 58999999999999999999998732210 1122557999999999999999
Q ss_pred ceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCc
Q 010302 53 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 132 (513)
Q Consensus 53 ~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (513)
+|+++++|+++++|.+. +..++-..++|..||+.+.|+|.|-+|+|+|.|++.++|.... ..
T Consensus 465 --fLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~--------------~~ 526 (707)
T KOG0263|consen 465 --FLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH--------------NK 526 (707)
T ss_pred --ceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc--------------CC
Confidence 99999999999999998 8888888889999999999999999999999999999997755 45
Q ss_pred cccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee
Q 010302 133 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 212 (513)
Q Consensus 133 ~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~ 212 (513)
++..+.+|.+-|.|+.|+|+..|+++||.|.++|+||+.+|..++.+.+|.
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----------------------------- 577 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----------------------------- 577 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-----------------------------
Confidence 688899999999999999999999999999999999999999999998765
Q ss_pred eccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccc
Q 010302 213 EIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 291 (513)
Q Consensus 213 e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (513)
.++..++|+|+|++|++++.++ |++||+.+|+.+..+-+|.+.+--+. +
T Consensus 578 -------~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls-----------------F------ 627 (707)
T KOG0263|consen 578 -------GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS-----------------F------ 627 (707)
T ss_pred -------CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE-----------------E------
Confidence 3456889999999999999887 89999999999988877664333222 2
Q ss_pred cCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 292 ESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 292 ~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
.+|+.++++|+.|+.+.+|+..-+.
T Consensus 628 -----S~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 628 -----SRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -----ecCCCEEEecCCCCeEEEEEchhhc
Confidence 2899999999999999999765443
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=234.12 Aligned_cols=262 Identities=16% Similarity=0.156 Sum_probs=211.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc-eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD-MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~-~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
+.||++|+||||++.|.+.-||++.... .....++.+|..+|..+.|||+.+ ++++|+.+..+.+||+. ++...+
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwDv~--tgd~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWDVD--TGDLRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeeccCC--cchhhh
Confidence 4799999999999999999999886432 223344668999999999999999 89999999999999998 777776
Q ss_pred Eee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC-cceEEEEEcCCCCEEE
Q 010302 80 SKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK-TTVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 ~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~spdg~~l~ 157 (513)
.+. +|...+.+++|.|||..+++|+.|+++..||+.. ..+....+.. ..|.+++.++||++++
T Consensus 306 ~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---------------n~~~~W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---------------NILGNWEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc---------------chhhcccccccceeEEEEEcCCCcEEE
Confidence 665 4568899999999999999999999999999854 3344444432 4599999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
+.+.|..|++++..+......+.+ ..+.++.+.+.+|++++..
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise-------------------------------------~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISE-------------------------------------EQPITSFSISKDGKLALVN 413 (519)
T ss_pred EEecccceeeechhhhhhhccccc-------------------------------------cCceeEEEEcCCCcEEEEE
Confidence 999999999999876544332211 1355678889999988766
Q ss_pred -cccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCc-------------------ceeeeeccccccccCCCCC
Q 010302 238 -TLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK-------------------KVRKIPAAAANANESKEPF 297 (513)
Q Consensus 238 -s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 297 (513)
...+|++||+..+++++.+-++. ..+|+..+.|+|...+. .+..+..|+-..+.++|||
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghk-q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHK-QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred cccCeeEEeecchhhHHHHhhccc-ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 56689999999999999998888 89999999998744222 2344444444489999999
Q ss_pred CCCeEEEeeecCceEEEEecCC
Q 010302 298 SDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 298 ~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.||.+||||++|+.|+||....
T Consensus 493 ~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 493 ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999997653
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=5e-29 Score=250.09 Aligned_cols=193 Identities=17% Similarity=0.222 Sum_probs=176.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+.++|++||.|++||+|.+.++...-..+ +|..+++.+.|+|.+. +++|++.|++.++|... ...+++.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d--~~~PlRi 530 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFAPRGY--YFATASHDQTARLWSTD--HNKPLRI 530 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEec--CCCcceeeEEecCCce--EEEecCCCceeeeeecc--cCCchhh
Confidence 4799999999999999999999999888766655 8999999999999877 99999999999999987 8899999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|.+.|.|+.|+|+.+++++||.|.++|+||+.+ +..+..+.+|+++|.+++|||+|++|++|+
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~--------------G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST--------------GNSVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCC--------------CcEEEEecCCCCceEEEEEcCCCceEeecc
Confidence 999999999999999999999999999999999988 566888899999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|+.|.+||+.+|+++.++.+|. ..+.++.|+.+|..|++++.+
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht------------------------------------~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHT------------------------------------GTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhccc------------------------------------CceeEEEEecCCCEEEecCCC
Confidence 99999999999999988887653 234578999999999999876
Q ss_pred -ceEEEEccc
Q 010302 241 -GIKIVNLHT 249 (513)
Q Consensus 241 -gi~v~d~~t 249 (513)
.|++||+..
T Consensus 641 nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 NSVRLWDLTK 650 (707)
T ss_pred CeEEEEEchh
Confidence 499999864
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=210.25 Aligned_cols=263 Identities=13% Similarity=0.075 Sum_probs=202.7
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCC---ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNY---DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~---~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
++|+|- |..|||||.|+.||||++..+ .+...+. .+|...|..++|+|.++ ++++++.|.++.||.-..+..+
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-~~hkrsVRsvAwsp~g~--~La~aSFD~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-DGHKRSVRSVAWSPHGR--YLASASFDATVVIWKKEDGEFE 96 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-ccchheeeeeeecCCCc--EEEEeeccceEEEeecCCCcee
Confidence 578888 899999999999999999853 3333322 47889999999999999 9999999999999987766789
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
++.++.+|...|.|++|+++|++|++++.|..+-||.+..... -++...+..|..-|..+.|+|...+|
T Consensus 97 cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-----------fec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-----------FECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-----------EEEEeeeccccccccEEEEcCCccee
Confidence 9999999999999999999999999999999999997753221 25577888999999999999999999
Q ss_pred EEEeCCCcEEEEEcC---CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 157 SITSPDRRIRVFWFR---TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~---tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
+++|+|.+|++|+-. +-.+.+++++|.. .+.+++|++.|+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~------------------------------------TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHEN------------------------------------TVWSLAFDNIGSR 209 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccc------------------------------------eEEEEEecCCCce
Confidence 999999999999876 3467788876542 2457789999999
Q ss_pred EEEccccc-eEEEEcc-------cCc---------EEEEeCCCCccchhheeccccCCcCCc--ceeeeeccccc--ccc
Q 010302 234 LIYATLLG-IKIVNLH-------TNK---------VSRILGKVENNDRFLRIALYQGDRSSK--KVRKIPAAAAN--ANE 292 (513)
Q Consensus 234 li~~s~~g-i~v~d~~-------t~~---------~v~~~g~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~ 292 (513)
|++++.++ ++||-.. +++ ++...|++. .+|..+.+ ..|... ....-.-.+++ .|.
T Consensus 210 l~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~-~i~lf~~s---~~~d~p~~~l~~~~~~aHe~dVNs 285 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDD-AIRLFKES---DSPDEPSWNLLAKKEGAHEVDVNS 285 (312)
T ss_pred EEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCC-EEEEEEec---CCCCCchHHHHHhhhcccccccce
Confidence 99888775 7887622 222 233334444 34433332 011111 11111123344 788
Q ss_pred CCCCCCCCeEEEeeecCceEEEEec
Q 010302 293 SKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 293 ~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
+.|++.-+.++++|++||.+.+|..
T Consensus 286 V~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 286 VQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred EEEcCCCCCceeecCCCceEEEEEe
Confidence 8999877899999999999999964
No 38
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.2e-29 Score=232.46 Aligned_cols=226 Identities=13% Similarity=0.106 Sum_probs=194.9
Q ss_pred CeEecC--CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVD--GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~d--g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
+.|+|. +.-||||+.||++++|++.+-.++.. +.+|...|..++|+|+++ ++.+++.|.+-++||++ +...+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~--l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~--tk~El 296 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQD--LEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLE--TKSEL 296 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhh--hhcchhhheeeeecCCCc--eeeecccccchhhcccc--cchhh
Confidence 468886 67899999999999999987666555 458999999999999999 99999999999999998 77777
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
....+|...|.+++|+|||.+++||+.|..-+|||+++ +.++..+.+|...|.+|+|||+|..|||
T Consensus 297 L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt--------------gr~im~L~gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT--------------GRCIMFLAGHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred HhhcccccccceeEecCCCceeeccCccchhheeeccc--------------CcEEEEecccccceeeEeECCCceEEee
Confidence 77789999999999999999999999999999999999 5568889999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecc-------ccCCCCCCceEEcCCC
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE-------KTETAPPSNAIFDESS 231 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~-------~~~~~~~~~i~fd~~g 231 (513)
||.|++++|||++..+++.++..|...++.+.+++..-+.|-...++..+.+..... ......+.++..+++|
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 999999999999999999999999999999999986555565555555554433111 1123466788899999
Q ss_pred CEEEEcccc-ceEEEE
Q 010302 232 NFLIYATLL-GIKIVN 246 (513)
Q Consensus 232 ~~li~~s~~-gi~v~d 246 (513)
+++++++.+ .+|+|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 999999877 589985
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=208.01 Aligned_cols=235 Identities=17% Similarity=0.226 Sum_probs=199.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.|+-||+|.++|+.|++|++|+...+.+++... +|...+..++.+.++. .+++|+.|+.+.+||+. +++.++.
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs--ghG~EVlD~~~s~Dns--kf~s~GgDk~v~vwDV~--TGkv~Rr 96 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS--GHGHEVLDAALSSDNS--KFASCGGDKAVQVWDVN--TGKVDRR 96 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccccceeeeec--CCCceeeecccccccc--ccccCCCCceEEEEEcc--cCeeeee
Confidence 4688999999999999999999999988888766 7888899998888887 89999999999999998 9999999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|.+.|..++|+.+...++||+.|.++++||.++.. .++++.+......|.++.. .+..+++||
T Consensus 97 ~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s------------~ePiQildea~D~V~Si~v--~~heIvaGS 162 (307)
T KOG0316|consen 97 FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS------------FEPIQILDEAKDGVSSIDV--AEHEIVAGS 162 (307)
T ss_pred cccccceeeEEEecCcceEEEeccccceeEEEEcccCC------------CCccchhhhhcCceeEEEe--cccEEEeec
Confidence 99999999999999999999999999999999998744 4778888888888999988 677899999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.||++|.||++.|++..-+ ...++++++|+++|++.+.++.+
T Consensus 163 ~DGtvRtydiR~G~l~sDy--------------------------------------~g~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDY--------------------------------------FGHPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred cCCcEEEEEeecceeehhh--------------------------------------cCCcceeEEecCCCCEEEEeecc
Confidence 9999999999999874322 12467899999999999999988
Q ss_pred c-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 241 G-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 241 g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+ ++++|-.||++++.+-+|. +..|---..+. .....+.+|++|+.+|+|+..+
T Consensus 205 stlrLlDk~tGklL~sYkGhk-n~eykldc~l~-------------------------qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHK-NMEYKLDCCLN-------------------------QSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ceeeecccchhHHHHHhcccc-cceeeeeeeec-------------------------ccceeEEeccCCceEEEEEecc
Confidence 6 8999999999999887776 22221111111 2234589999999999997654
No 40
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=5.4e-27 Score=208.81 Aligned_cols=232 Identities=17% Similarity=0.184 Sum_probs=192.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCcee---EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMM---LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~---~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
-+.|.+++.|.++.+|++...+.. ....+.+|...+..+..+++++ +++|++.|+++++||+. +++..+.|.+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~lrlWDl~--~g~~t~~f~G 103 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGTLRLWDLA--TGESTRRFVG 103 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccceEEEEEec--CCcEEEEEEe
Confidence 578999999999999998753322 2445668999999999999999 99999999999999998 7799999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccC--CcceEEEEEcCC--CCEEEEE
Q 010302 84 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS--KTTVSAIEVSPD--GKQFSIT 159 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~spd--g~~l~s~ 159 (513)
|...|.+++|+||...++|||.|.+|++|++-. .+.+++..+ ..+|.|++|+|+ ..+|+++
T Consensus 104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g---------------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG---------------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred cCCceEEEEecCCCceeecCCCcceeeeeeecc---------------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 999999999999999999999999999998843 445555443 789999999998 6799999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
|.|+++++||+++.++...+-+|. ..++.+.++|||...++|..
T Consensus 169 s~DktvKvWnl~~~~l~~~~~gh~------------------------------------~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQLRTTFIGHS------------------------------------GYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred cCCceEEEEccCCcchhhcccccc------------------------------------ccEEEEEECCCCCEEecCCC
Confidence 999999999999999877776543 23467899999999999987
Q ss_pred cc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 240 LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 240 ~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+| +-+||+..++.+..+++.+ .++.+.++ |+...+|.+-.. .|.||...
T Consensus 213 dg~~~LwdL~~~k~lysl~a~~-~v~sl~fs----------------------------pnrywL~~at~~-sIkIwdl~ 262 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYSLEAFD-IVNSLCFS----------------------------PNRYWLCAATAT-SIKIWDLE 262 (315)
T ss_pred CceEEEEEccCCceeEeccCCC-eEeeEEec----------------------------CCceeEeeccCC-ceEEEecc
Confidence 76 8999999999999998766 44433332 566667777666 49999877
Q ss_pred CCCCC
Q 010302 319 EPEEP 323 (513)
Q Consensus 319 ~~~~~ 323 (513)
.....
T Consensus 263 ~~~~v 267 (315)
T KOG0279|consen 263 SKAVV 267 (315)
T ss_pred chhhh
Confidence 65444
No 41
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-29 Score=213.07 Aligned_cols=146 Identities=49% Similarity=0.829 Sum_probs=133.5
Q ss_pred EeCCeEEEEEeCCCCChHHHHHHHHhhhcc---ccCCceEEE---eEeCcEEEeccC-CCCCCCCcccCCCCCccccccC
Q 010302 363 HTTMGDIHMKLYPEECPKTVENFTTHCRNE---YYNNLIFHR---VIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 363 ~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~---~y~~~~~~r---v~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
..+.|+++++||.+..|+|++||..||.+. -|++..||| .+++||+||||. ..+++++.++|+..|+||. ..
T Consensus 14 ~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den-Fi 92 (167)
T KOG0865|consen 14 GEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN-FI 92 (167)
T ss_pred CccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcC-cE
Confidence 467899999999999999999999999743 299999999 345799999998 4678999999999999987 89
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v 510 (513)
++|..||.|+||+.+|++++|||||++....|||++|+|||+|.+||+++++++.... ++++|..+|.|.+|+.
T Consensus 93 lkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i~i~dcg~ 166 (167)
T KOG0865|consen 93 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKITIADCGQ 166 (167)
T ss_pred EecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccEEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999665 6699999999999974
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=5.3e-28 Score=225.25 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=193.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC-CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF-IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~-~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
+.||++|.+++||+.+|.|++|+..-.. +.. +.. |...|.+++|+|... .+++++.|++|+|||.. ..+..+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~--~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~--~~kee~ 216 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI--IQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFR--MPKEER 216 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhh-hHH--hhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEecc--CCchhh
Confidence 5799999999999999999999985322 222 223 347899999999665 89999999999999998 777778
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+.+|...|.++.|+|...+++|+|.|..|++||.++ +.++.++..|+..|..+.|+|++++|+++
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS--------------g~cl~tlh~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--------------GSCLATLHGHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred eeccCCCCcceeccCCccceeEEccCCceeEeecCCC--------------cchhhhhhhccceEEEEEEcCCCCeeEEc
Confidence 8899999999999999999999999999999999988 56799999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc-
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT- 238 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s- 238 (513)
|.|..+++||+++.+.++++.+|...+.++.|++. .-.++.++.
T Consensus 283 skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~-----------------------------------~~~lftsgg~ 327 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL-----------------------------------NESLFTSGGS 327 (464)
T ss_pred cCCceEEEEehhHhHHHHHhhcchhhheeeccccc-----------------------------------cccceeeccC
Confidence 99999999999998888888888877666665543 223444444
Q ss_pred ccceEEEEcccCcEEEEeCC-CCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 239 LLGIKIVNLHTNKVSRILGK-VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 239 ~~gi~v~d~~t~~~v~~~g~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
+..|..|.+...+.+..++. |++ .+..+ +| .+=+-|+|||++|+.+..|+|
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~--~iwsl-------------------------~~-hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDG--EIWSL-------------------------AY-HPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccccccCCCccccc--ceeee-------------------------ec-cccceeEeecCCCcceeeecc
Confidence 44588888875555555542 331 11111 23 277889999999999999999
Q ss_pred CCCCCC
Q 010302 318 REPEEP 323 (513)
Q Consensus 318 ~~~~~~ 323 (513)
.-|.+.
T Consensus 380 ~rp~d~ 385 (464)
T KOG0284|consen 380 NRPGDK 385 (464)
T ss_pred CCCCCc
Confidence 988755
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=216.94 Aligned_cols=234 Identities=17% Similarity=0.199 Sum_probs=199.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|++.|-.++||||+.|++++|||+.++++...+ .+|...|..+++|+-.. ++++++.|++|+-||+. ..+.++.
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl--tGhi~~vr~vavS~rHp--YlFs~gedk~VKCwDLe--~nkvIR~ 230 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTL--TGHIETVRGVAVSKRHP--YLFSAGEDKQVKCWDLE--YNKVIRH 230 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEee--cchhheeeeeeecccCc--eEEEecCCCeeEEEech--hhhhHHH
Confidence 578899999999999999999999999886664 48889999999998777 99999999999999998 8899999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
..+|-+.|.|++.+|.-+.|++|+.|.++++||+++ ...+..+.+|..+|.++.+.|-...+++||
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt--------------r~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT--------------RASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred hccccceeEEEeccccceeEEecCCcceEEEeeecc--------------cceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999999999999999999999999999999999988 556889999999999999999888999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|++|++||++.|+...++..|.. .+..++.+|..+.+++++.+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkk------------------------------------svral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKK------------------------------------SVRALCLHPKENLFASASPD 340 (460)
T ss_pred CCceEEEeeeccCceeEeeecccc------------------------------------eeeEEecCCchhhhhccCCc
Confidence 999999999999999888765442 33466778888888899999
Q ss_pred ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 241 GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 241 gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.|+-|++-.|+.+.-+.++...+. .++. ..|+ ++.+|++++.+..|.-++
T Consensus 341 nik~w~~p~g~f~~nlsgh~~iin--tl~~--------------------------nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 341 NIKQWKLPEGEFLQNLSGHNAIIN--TLSV--------------------------NSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred cceeccCCccchhhccccccceee--eeee--------------------------ccCc-eEEEcCCceEEEEEecCc
Confidence 999999999988877655442111 1221 2333 467899999999996554
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.9e-26 Score=218.47 Aligned_cols=205 Identities=18% Similarity=0.286 Sum_probs=177.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD------- 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~------- 73 (513)
|+|+.+|.+||+|+.||.++||+... .++. .+..|.++|..+.|...+. ++++++-|+++.+||...+
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~--tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDG-NLIS--TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCc-hhhh--hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 58999999999999999999999853 4433 3558999999999999998 9999999999999997421
Q ss_pred --------------------------------CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCC
Q 010302 74 --------------------------------SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 121 (513)
Q Consensus 74 --------------------------------~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 121 (513)
...|+.++.+|.++|.++.|+|.+.+|+|+|.|++++||+...
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~----- 390 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ----- 390 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-----
Confidence 2245667779999999999999999999999999999998755
Q ss_pred cceeeeecCCccccccccCCcceEEEEEcCCCC---------EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcC
Q 010302 122 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK---------QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 192 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~---------~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 192 (513)
......+..|...|+.+.|||+|. .+++++.|++|++||+..|.++.++..|.
T Consensus 391 ---------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--------- 452 (524)
T KOG0273|consen 391 ---------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--------- 452 (524)
T ss_pred ---------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC---------
Confidence 456778889999999999999664 68999999999999999999999885443
Q ss_pred CCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC
Q 010302 193 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 193 ~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
.++..++|+|+|+|+++|+.+| |.+|+..++++++.+++..
T Consensus 453 ---------------------------~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 453 ---------------------------EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred ---------------------------CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 2455789999999999999887 8999999999999998766
No 45
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=201.59 Aligned_cols=237 Identities=14% Similarity=0.161 Sum_probs=199.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC----CCc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD----SNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~----~~~ 76 (513)
+.|++|.++|+++|.||.+-|||.-+....+.+.++ ...|-.++|+|.++ ++++|+-|+...||++... .-+
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--s~WVMtCA~sPSg~--~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--SSWVMTCAYSPSGN--FVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecC--ceeEEEEEECCCCC--eEEecCcCceeEEEecccccccccce
Confidence 469999999999999999999999887776766643 46788899999999 9999999999999999722 124
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQ 155 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~ 155 (513)
..+.+.+|++.+.|+.|-+ ..+|+++|.|.+..+||+++ ++.+..+.+|.+-|.+++++| +++.
T Consensus 137 v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--------------g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--------------GQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred eeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--------------ceEEEEecCCcccEEEEecCCCCCCe
Confidence 5566889999999999977 55788999999999999988 556888999999999999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
+++|+-|+..++||++.+.+.++|.+|.. .+.++.|-|+|.-++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghes------------------------------------DINsv~ffP~G~afa 245 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHES------------------------------------DINSVRFFPSGDAFA 245 (343)
T ss_pred EEecccccceeeeeccCcceeEeeccccc------------------------------------ccceEEEccCCCeee
Confidence 99999999999999999999999987652 346789999999999
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
+++.++ .+++|+...+-+.++.++. ...++..+.++ ..+.|+-+|++|.++++
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~---------------~~~gitSv~FS-----------~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDS---------------IICGITSVAFS-----------KSGRLLFAGYDDFTCNV 299 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCc---------------ccCCceeEEEc-----------ccccEEEeeecCCceeE
Confidence 999887 7999999888777775433 33344445553 56777888899999999
Q ss_pred EecC
Q 010302 315 FSRR 318 (513)
Q Consensus 315 ~~~~ 318 (513)
|.-=
T Consensus 300 WDtl 303 (343)
T KOG0286|consen 300 WDTL 303 (343)
T ss_pred eecc
Confidence 9643
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=213.85 Aligned_cols=239 Identities=17% Similarity=0.218 Sum_probs=193.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC------CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF------IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~------~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
.|||||+||++||.||-|.+|+..+|+...-++... +...+.++.|+.++. ++++|+.||.|++|.++ ++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIKvWri~--tG 295 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIKVWRIE--TG 295 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEEEEEEe--cc
Confidence 599999999999999999999999998765554332 457899999999998 99999999999999998 99
Q ss_pred cceEEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 76 EPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 76 ~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
.+++.+. .|+..|+|+.|+.|+..++|++.|.++++.-+.+ ++++.++.+|.+.|+...|++||.
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--------------GK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--------------GKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--------------chhHHHhcCccccccceEEcCCCC
Confidence 9999998 9999999999999999999999999999998766 667999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE-EcC-CCC
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI-FDE-SSN 232 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~-fd~-~g~ 232 (513)
+++++|.||+|++|+.++.+|+.++..-... .++.++. +-. -.+
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d----------------------------------~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTD----------------------------------YPVNSVILLPKNPEH 407 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCc----------------------------------ccceeEEEcCCCCce
Confidence 9999999999999999999998887531100 1112221 211 234
Q ss_pred EEEEccccceEEEEcccCcEEEEe--CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCc
Q 010302 233 FLIYATLLGIKIVNLHTNKVSRIL--GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH 310 (513)
Q Consensus 233 ~li~~s~~gi~v~d~~t~~~v~~~--g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~ 310 (513)
++++.-...+.|.++ .|++++.+ |+.+ ...|++..+ .+.+-++-+.++|+
T Consensus 408 ~iVCNrsntv~imn~-qGQvVrsfsSGkRE-gGdFi~~~l--------------------------SpkGewiYcigED~ 459 (508)
T KOG0275|consen 408 FIVCNRSNTVYIMNM-QGQVVRSFSSGKRE-GGDFINAIL--------------------------SPKGEWIYCIGEDG 459 (508)
T ss_pred EEEEcCCCeEEEEec-cceEEeeeccCCcc-CCceEEEEe--------------------------cCCCcEEEEEccCc
Confidence 666666667888888 78999987 4444 444444432 25666788888999
Q ss_pred eEEEEecCCC
Q 010302 311 RIYLFSRREP 320 (513)
Q Consensus 311 ~i~i~~~~~~ 320 (513)
.+|+|+-.+.
T Consensus 460 vlYCF~~~sG 469 (508)
T KOG0275|consen 460 VLYCFSVLSG 469 (508)
T ss_pred EEEEEEeecC
Confidence 9999986653
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=5e-28 Score=225.41 Aligned_cols=234 Identities=11% Similarity=0.122 Sum_probs=195.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|.|.|+|+.|++|+..|.+.+|+..++.... -+..|...|..+.|++++. .++||+.++.|++|+.. ...++.
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt--ilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpn---mnnVk~ 174 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFET--ILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPN---MNNVKI 174 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHH--HhhhhcccceeEEEccCCC--EEEEcCCCceEEecccc---hhhhHH
Confidence 5799999999999999999999986443222 2458999999999999999 99999999999999984 555666
Q ss_pred eecCC-CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 81 KKVHM-GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~~h~-~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
++.|. ..|++++|+|+...|+++|.||+|+|||... .+.-..+.+|.--|.+++|+|....++++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~--------------~kee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM--------------PKEERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC--------------CchhheeccCCCCcceeccCCccceeEEc
Confidence 66555 8999999999999999999999999999866 33345678899999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
|.|..|++||.++|.|+.++.+|... +..+.|+++++||++++.
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKnt------------------------------------Vl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNT------------------------------------VLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccce------------------------------------EEEEEEcCCCCeeEEccC
Confidence 99999999999999999887665432 346789999999999987
Q ss_pred cc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 240 LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 240 ~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+. ++++|+.+-+-++++.+|+.. .....|++-.+-||++|+.|+.|+.|.-.
T Consensus 285 D~~~kv~DiR~mkEl~~~r~Hkkd---------------------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 285 DQSCKVFDIRTMKELFTYRGHKKD---------------------------VTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred CceEEEEehhHhHHHHHhhcchhh---------------------------heeeccccccccceeeccCCCceEEEecc
Confidence 74 899999876666666655521 33456778899999999999999999644
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=235.60 Aligned_cols=239 Identities=20% Similarity=0.221 Sum_probs=193.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|||||+++++++.|++|+|||++ .+..+..+ .+|...+.+++|++.++ ++++|+.|++|+|||++ +++++.
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l--~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~--~~~~~~ 282 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL--KGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVR--TGECVR 282 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEe--cCCCCceEEEEecCCCC--EEEEecCCCcEEEEecc--CCeEEE
Confidence 5899999999999999999999993 34555554 49999999999999996 99999999999999998 799999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc--ceEEEEEcCCCCEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT--TVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~v~~spdg~~l~ 157 (513)
.+.+|...|++++|++++++|++++.|+.|++||+.++.+ . ++..+..+.. .+++++|+|++.+++
T Consensus 283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~-----------~-~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK-----------L-CLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce-----------e-eeecccCCCCCCceeEEEECCCCcEEE
Confidence 9999999999999999999999999999999999988542 0 2345555444 599999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
+++.|+.+++||+..+++..++.+|.... .......+.+.|++++.+
T Consensus 351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSVGTYTGHSNLV---------------------------------RCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred EecCCCeEEEEEccCCcceeeecccCCcc---------------------------------eeEecccccCCCCeEEEE
Confidence 99999999999999999998887654221 011233457899999999
Q ss_pred cccc-eEEEEcccCcEEEEeCCC-CccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeee--cCceEE
Q 010302 238 TLLG-IKIVNLHTNKVSRILGKV-ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF--KRHRIY 313 (513)
Q Consensus 238 s~~g-i~v~d~~t~~~v~~~g~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~--~~~~i~ 313 (513)
+.++ |++||+.++..+..+.++ .....-+. + .+.+.+++++. .|+.+.
T Consensus 398 ~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~---------------------------~-~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSGGILQRLEGHSKAAVSDLS---------------------------S-HPTENLIASSSFEGDGLIR 449 (456)
T ss_pred eCCceEEEEeCCccchhhhhcCCCCCceeccc---------------------------c-CCCcCeeeecCcCCCceEE
Confidence 8776 999999998888887666 32211111 1 24555667776 788999
Q ss_pred EEecC
Q 010302 314 LFSRR 318 (513)
Q Consensus 314 i~~~~ 318 (513)
+|...
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99543
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8e-26 Score=225.12 Aligned_cols=266 Identities=14% Similarity=0.165 Sum_probs=213.4
Q ss_pred CeEecCCCEEEEEeC-CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISN-DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~-D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|+..|.+||.|+. =|.+-||++.+...+ ++.++|...+.++.++||++ ++++|+.|+.|+|||.+ ++-|+.
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYV--lKQQgH~~~i~~l~YSpDgq--~iaTG~eDgKVKvWn~~--SgfC~v 386 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYV--LKQQGHSDRITSLAYSPDGQ--LIATGAEDGKVKVWNTQ--SGFCFV 386 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeecccee--eeccccccceeeEEECCCCc--EEEeccCCCcEEEEecc--CceEEE
Confidence 467888999999875 489999999865544 44558899999999999999 99999999999999998 889999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC------CCCCCCc------------------------ceeeeec
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH------TLQFPES------------------------EVSFRLK 129 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~------~~~~~~~------------------------~~~~~~~ 129 (513)
++..|++.|+.+.|+..++.++++|-||+|+.||+. +++.|.. ++.|+.+
T Consensus 387 TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 999999999999999999999999999999999874 4455532 5679999
Q ss_pred CCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCcccccccccccee
Q 010302 130 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 208 (513)
Q Consensus 130 ~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~ 208 (513)
+++.+-.+.+|.++|.+++|+|++..|+++|+|.+||+||+-.. ..+.+++-
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--------------------------- 519 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--------------------------- 519 (893)
T ss_pred cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------------------------
Confidence 99999999999999999999999999999999999999997543 12222211
Q ss_pred eeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeC-CCC-ccchhheecc-ccCCcCCcceeeee
Q 010302 209 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG-KVE-NNDRFLRIAL-YQGDRSSKKVRKIP 284 (513)
Q Consensus 209 ~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g-~~~-~~~r~~~~~~-~~~~~~~~~~~~~~ 284 (513)
......++|.|+|+.|+.++.+| |.+||+..+..+..+. ..+ ...|...=.+ -+.....+...++.
T Consensus 520 ----------~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ 589 (893)
T KOG0291|consen 520 ----------RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC 589 (893)
T ss_pred ----------ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence 12345789999999999999886 9999999887776663 222 1222221111 12233445577777
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 010302 285 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 285 ~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
++ .|+..+.+|++.+.|-||+-++.
T Consensus 590 yS-----------aDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 590 YS-----------ADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred Ec-----------CCCCEEEecCCcccEEEEECchh
Confidence 74 89999999999999999987764
No 50
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.1e-27 Score=234.88 Aligned_cols=238 Identities=16% Similarity=0.167 Sum_probs=193.2
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCce--eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC--CCCc-ceE
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDM--MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA--DSNE-PLI 79 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~--~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~--~~~~-~i~ 79 (513)
.+|.+|||||.|+++++|.++++.. ...-...+|...+..++++..+.. ++++++.|+++++|++.. .+.. .+.
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~as-ffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGAS-FFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCcc-EEEEecCCceEEEecCCCccccccccee
Confidence 5788999999999999998844322 222234578888999998655543 899999999999999963 1111 111
Q ss_pred ----EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 80 ----SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 80 ----~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
+...|...|.|++.+|+.+++++||.|.+.+||+++. ...+.++.+|+..|+++.|+|..+.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--------------~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--------------LRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred hhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--------------ceEEEEeeCCccceEEEEeccccce
Confidence 2238999999999999999999999999999999975 4557889999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
++|+|.|++|+||.+.+..|++++++|...+ --+.|-.+|..|+
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~aV------------------------------------lra~F~~~~~qli 563 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAV------------------------------------LRASFIRNGKQLI 563 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCcccee------------------------------------EeeeeeeCCcEEE
Confidence 9999999999999999999999999876442 2346777889899
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
++..+| ||+||+.+++|+..+..|+ -|++.++. .++..+|+||+.|++|-.
T Consensus 564 S~~adGliKlWnikt~eC~~tlD~H~--DrvWaL~~--------------------------~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTNECEMTLDAHN--DRVWALSV--------------------------SPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred eccCCCcEEEEeccchhhhhhhhhcc--ceeEEEee--------------------------cCccceeEecCCCeEEEE
Confidence 887777 8999999999999997765 46666664 244457999999999999
Q ss_pred EecCCCC
Q 010302 315 FSRREPE 321 (513)
Q Consensus 315 ~~~~~~~ 321 (513)
|-.-+-+
T Consensus 616 wkD~Te~ 622 (775)
T KOG0319|consen 616 WKDVTEE 622 (775)
T ss_pred eecCcHH
Confidence 9766533
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-27 Score=217.27 Aligned_cols=250 Identities=16% Similarity=0.123 Sum_probs=210.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
-|.|+--.++++++|.+|++||..++++... +.+|...+..++++..+. ++++++.|-.+++||.. ...++++.+
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~--LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd~~-~~~~c~ks~ 189 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERS--LRGHTDSVFDISFDASGK--YLATCSSDLSAKLWDFD-TFFRCIKSL 189 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhh--hhccccceeEEEEecCcc--EEEecCCccchhheeHH-HHHHHHHHh
Confidence 4778888999999999999999999998555 458999999999999987 99999999999999996 236788888
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+|.-.|.++.|-|.|++++|++.|.+|+.|++.+ +.+++++.+|..+|..+..+.||..+|+++.
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--------------g~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--------------GYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred cCcccceeeEEEEecCCeeeecccccceeEEeccc--------------ceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 89999999999999999999999999999999988 5679999999999999999999999999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
|.++++|-+.++++...+.+|.-.+.++.|.+...|. .. . ...+ -...|+++..++.++
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~--~i------------~--~at~-----~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP--SI------------S--EATG-----STNGGQVLGSGSRDK 314 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCc--ch------------h--hccC-----CCCCccEEEeecccc
Confidence 9999999999999888888888777777776652220 00 0 0000 012568999998776
Q ss_pred -eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 242 -IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 242 -i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
||+||+.+|.|+.++++|++-+|-+.++ +.+..++|..+|+.+.+|+-+.
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~----------------------------p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFS----------------------------PGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEc----------------------------CCCeEEEEEecCCcEEEEEecc
Confidence 9999999999999999988666644443 7788899999999999997554
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.7e-27 Score=217.46 Aligned_cols=225 Identities=18% Similarity=0.230 Sum_probs=190.6
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
-|.+.+++|..|++|+|||..+..+... +.+|.+.+.++.+..- +++||+.|.+|++||++ +++++.++-+|
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~r----viisGSSDsTvrvWDv~--tge~l~tlihH 276 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDER----VIVSGSSDSTVRVWDVN--TGEPLNTLIHH 276 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccce----EEEecCCCceEEEEecc--CCchhhHHhhh
Confidence 4667899999999999999987776655 4499999999988543 99999999999999998 99999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCc
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~ 164 (513)
...|..+.|+ ..+++++|.|.++.+||+.... ..+....+.+|...|+.+.| |.++++++|.|.+
T Consensus 277 ceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-----------~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRT 341 (499)
T KOG0281|consen 277 CEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-----------DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 341 (499)
T ss_pred cceeEEEEEe--CCEEEEecCCceeEEEeccCch-----------HHHHHHHHhhhhhheeeecc--ccceEEEecCCce
Confidence 9999999995 4589999999999999986532 13456678899999999999 7789999999999
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceE
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIK 243 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~ 243 (513)
|++|+..|+++++++.+|...+.++|. .|+++++|+.+ .|+
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQY--------------------------------------r~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQY--------------------------------------RDRLVVSGSSDNTIR 383 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhc--------------------------------------cCeEEEecCCCceEE
Confidence 999999999999999998777666553 67899999776 599
Q ss_pred EEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 010302 244 IVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 244 v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
+||+..|.+++++.+||.-+|.+.+. ..-++||.=||+|.+|.-...
T Consensus 384 lwdi~~G~cLRvLeGHEeLvRciRFd------------------------------~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 384 LWDIECGACLRVLEGHEELVRCIRFD------------------------------NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred EEeccccHHHHHHhchHHhhhheeec------------------------------CceeeeccccceEEEEecccc
Confidence 99999999999998888566655542 223788889999999965543
No 53
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.1e-26 Score=208.81 Aligned_cols=233 Identities=14% Similarity=0.163 Sum_probs=197.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC-CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN-YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~-~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|+..|++||+||.|-.+++||..+ .+++.. +.+|...+.++.|-|.+. +++|++.|.+|+.|++. ++-+++
T Consensus 156 i~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks--~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~--tg~cv~ 229 (406)
T KOG0295|consen 156 ISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS--LIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECD--TGYCVK 229 (406)
T ss_pred EEEecCccEEEecCCccchhheeHHHHHHHHHH--hcCcccceeeEEEEecCC--eeeecccccceeEEecc--cceeEE
Confidence 47888999999999999999999986 344443 347888899999999987 99999999999999998 999999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC-------
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD------- 152 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd------- 152 (513)
++.+|...|..++.+.||.++++++.|.++++|-+.+ .++...+..|.-+|-+++|.|.
T Consensus 230 t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t--------------~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 230 TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT--------------KQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred eccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc--------------chhhhhhhccccceEEEEecccccCcchh
Confidence 9999999999999999999999999999999998877 3457778889999999999762
Q ss_pred --------CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCc
Q 010302 153 --------GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSN 224 (513)
Q Consensus 153 --------g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~ 224 (513)
++++++++.|++|++||+.+|.++.++.+|.. .+..
T Consensus 296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn------------------------------------wVr~ 339 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN------------------------------------WVRG 339 (406)
T ss_pred hccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc------------------------------------eeee
Confidence 25899999999999999999999999987653 3457
Q ss_pred eEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEE
Q 010302 225 AIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLL 303 (513)
Q Consensus 225 i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 303 (513)
++|+|-|+||+++.+++ ++|||+.+++|.+++..++. | +..++++ .+.-.+
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h---f--------------vt~lDfh-----------~~~p~V 391 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH---F--------------VTSLDFH-----------KTAPYV 391 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc---e--------------eEEEecC-----------CCCceE
Confidence 88999999999988775 99999999999999987762 1 1222332 333378
Q ss_pred EeeecCceEEEEec
Q 010302 304 CCAFKRHRIYLFSR 317 (513)
Q Consensus 304 ~s~~~~~~i~i~~~ 317 (513)
.||+=|....+|-+
T Consensus 392 vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 392 VTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccccceeeeeec
Confidence 99999999999954
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=9.3e-26 Score=202.85 Aligned_cols=244 Identities=14% Similarity=0.096 Sum_probs=194.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.|+|+|.+||||+.|..|.+|++. +++.....+++|.+.|..+.|..++. .++|++.|++++.||.+ +++.++.
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD~~--tG~~~rk 127 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWDAE--TGKRIRK 127 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEecc--cceeeeh
Confidence 3699999999999999999999975 35556667779999999999999999 99999999999999998 9999999
Q ss_pred eecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
+++|..-|.++.-+.-| .++.|++.|+++++||+++.. +++.+ ..+-++++++|..++..+.+|
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--------------~~~t~-~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--------------AIKTF-ENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeecccc--------------hhhcc-ccceeEEEEEecccccceeec
Confidence 99999999999855444 466899999999999998732 23333 234568999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccccc-ceee-------eeeecccc------CCCCCCce
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG-RRMA-------VEKEIEKT------ETAPPSNA 225 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~r~~-------~e~e~~~~------~~~~~~~i 225 (513)
+-|+.|++||++....++++.+|.+.++.+..++...+.+...-.. .|+- .++.+... -....-..
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 9999999999999999999999999999998888765554332111 1110 11111110 01223356
Q ss_pred EEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccch
Q 010302 226 IFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR 264 (513)
Q Consensus 226 ~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r 264 (513)
+|+|+++++-.++.+. +.+||..+.+++..+.+|.+.+.
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 8999999999997664 99999999999999988875443
No 55
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=194.26 Aligned_cols=209 Identities=17% Similarity=0.155 Sum_probs=170.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|.|..||++++|||+||++||||++...+.+.+. ++.+++.+...|... -|++|..++.|++||+. ...+.+.
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQt--eLis~dqsg~irvWDl~--~~~c~~~ 161 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQT--ELISGDQSGNIRVWDLG--ENSCTHE 161 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcc--eEEeecCCCcEEEEEcc--CCccccc
Confidence 4688999999999999999999999855544444 568899999998877 89999999999999997 4444444
Q ss_pred ee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 81 KK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
+. ....+|.++...|+|.+++.+...|...+|++-..+... .-+++..+..|++.+..+.+|||+++||++
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s--------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS--------ELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc--------cceEhhheecccceEEEEEECCCCcEEEee
Confidence 33 445789999999999999999999999999886533211 135567788899999999999999999999
Q ss_pred eCCCcEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 160 SPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 160 s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
|.|.+++||+..+- +...++++|. ..+...+|+-+|+||++++
T Consensus 234 ssdktv~iwn~~~~~kle~~l~gh~------------------------------------rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFFKLELVLTGHQ------------------------------------RWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred cCCceEEEEecCCceeeEEEeecCC------------------------------------ceEEeeeeccCccEEEecC
Confidence 99999999998876 4444444321 2345678999999999998
Q ss_pred ccc-eEEEEcccCcEEEEeCCCC
Q 010302 239 LLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 239 ~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
.++ .++|++..|+.++.+++|.
T Consensus 278 sd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 278 SDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred CCCceeecccccCceeeecCCcc
Confidence 775 8999999999999997665
No 56
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=216.72 Aligned_cols=235 Identities=13% Similarity=0.185 Sum_probs=200.2
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
+|++.-+.||++-..|...+|++..+.+++.+.+. ...+..+.|...+.- +++.++.=|++.||+++ +...+...
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis--~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWq--sEsYVlKQ 346 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS--DQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQ--SESYVLKQ 346 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecc--cceeeEEEecccCCE-EEEcCCccceEEEEEee--ccceeeec
Confidence 56777789999999999999999999999888754 456888888877772 34444556899999998 77778888
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
++|...+++++++|||+++++|+.||.|+|||... +-|..++..|++.|+.++|+.+|+.+++.|.
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--------------gfC~vTFteHts~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS--------------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccC--------------ceEEEEeccCCCceEEEEEEecCCEEEEeec
Confidence 89999999999999999999999999999999977 5678999999999999999999999999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL- 240 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~- 240 (513)
||+||.||+..++..+++.. +...+..+++.||+|..++.|+.+
T Consensus 413 DGtVRAwDlkRYrNfRTft~-----------------------------------P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRTFTS-----------------------------------PEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred CCeEEeeeecccceeeeecC-----------------------------------CCceeeeEEEEcCCCCEEEeeccce
Confidence 99999999999999998853 112345688999999999999876
Q ss_pred -ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 241 -GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 241 -gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.|.||++.||+++-++.+||+.+--+.++ ++..+++||+-|+.|+||+-=
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~----------------------------~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFS----------------------------PDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEc----------------------------cccCeEEeccccceEEEEEee
Confidence 59999999999999999999654433332 666799999999999999743
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3e-25 Score=224.82 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=183.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce-----------------------e---E-----------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM-----------------------M---L----------------------- 31 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~-----------------------~---~----------------------- 31 (513)
+.||+||+|||+||.|+.|+||.+..-+. . .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 47999999999999999999998865000 0 0
Q ss_pred ---------EEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC-CCCEEE
Q 010302 32 ---------MIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVI 101 (513)
Q Consensus 32 ---------~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~ 101 (513)
...+.+|.+.|..+.||.++ +|+|++.|+++++|++. ..++++.| .|...|+|++|+| |.++|+
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~--~~~CL~~F-~HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPG--RKECLKVF-SHNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred ccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCC--CcceeeEE-ecCCeeEEEEecccCCCcEe
Confidence 00123466778888888654 89999999999999997 78899888 5999999999999 889999
Q ss_pred EEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 102 SADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 102 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
||+-|+.+|||++... .+........-|+++||+|||++.+.|+.+|.+++|+....++.....-
T Consensus 427 SGSLD~KvRiWsI~d~---------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDK---------------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ecccccceEEeecCcC---------------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999999998552 2333334446799999999999999999999999999998887665432
Q ss_pred cHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC--EEEEccccceEEEEcccCcEEEEeCCC
Q 010302 182 SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN--FLIYATLLGIKIVNLHTNKVSRILGKV 259 (513)
Q Consensus 182 ~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~--~li~~s~~gi~v~d~~t~~~v~~~g~~ 259 (513)
+... + ++.....++.+.|.|... .|++..+-.|+|+|....+++..+.+.
T Consensus 492 ~~~~-------------------~---------Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~ 543 (712)
T KOG0283|consen 492 RLHN-------------------K---------KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF 543 (712)
T ss_pred eecc-------------------C---------ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence 1100 0 011122456666665443 777777778999999999988888654
Q ss_pred CccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 260 ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 260 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
. +.+-...|-|. .|+.-+.||++|.-||||...++.
T Consensus 544 ~-n~~SQ~~Asfs-------------------------~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 544 R-NTSSQISASFS-------------------------SDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred c-cCCcceeeeEc-------------------------cCCCEEEEeecCceEEEEeCCCCc
Confidence 4 22222233222 477778888899999999887644
No 58
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=3.9e-24 Score=187.63 Aligned_cols=235 Identities=12% Similarity=0.177 Sum_probs=184.4
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCC
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP 87 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~ 87 (513)
-+|||+|.|-+||+|...+|.+...+. ...+.++.+...|+.. .+++++. ..|++||++..+..++.++.+|...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~--~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEITPDKK--DLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEcCCcc--hhhhccC-CeeEEEEccCCCCCceeEEeccCCc
Confidence 579999999999999999999988876 4567899999999988 6666554 5799999997777799999999999
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 010302 88 VKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRV 167 (513)
Q Consensus 88 V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~i 167 (513)
|+++.|..+|+.+++||+||+++|||++...+ .....|.++|+++..+|+..-|+++..+|.|++
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~---------------qR~~~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC---------------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCccc---------------chhccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 99999999999999999999999999988443 334457789999999999999999999999999
Q ss_pred EEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEE
Q 010302 168 FWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVN 246 (513)
Q Consensus 168 wd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d 246 (513)
||+.+..+...+-. .....+.++...++|.+|+.+...| ..+|+
T Consensus 151 WDl~~~~c~~~liP-----------------------------------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 151 WDLGENSCTHELIP-----------------------------------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWR 195 (311)
T ss_pred EEccCCccccccCC-----------------------------------CCCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence 99988766443311 1123456788999999999998876 89999
Q ss_pred cccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 247 LHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 247 ~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+-+++-...+ .-+.-|+.+ ...+...-+ .+|...+|+++.|+.+|||+-+.
T Consensus 196 l~~~~~~s~l---------~P~~k~~ah--~~~il~C~l-----------SPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 196 LLNHQTASEL---------EPVHKFQAH--NGHILRCLL-----------SPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ccCCCccccc---------eEhhheecc--cceEEEEEE-----------CCCCcEEEeecCCceEEEEecCC
Confidence 9764322222 111122221 112222222 38999999999999999996554
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.8e-25 Score=201.48 Aligned_cols=270 Identities=15% Similarity=0.168 Sum_probs=193.7
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCC------------ce----eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNY------------DM----MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~------------~~----~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I 65 (513)
+|||||.++|+||.|.+|+|+|++.. +. --+..+-.|...++.+.|+|... +++|++.|++|
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~--ILiS~srD~tv 196 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET--ILISGSRDNTV 196 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--eEEeccCCCeE
Confidence 69999999999999999999999721 00 01123445778899999999888 99999999999
Q ss_pred EEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceE
Q 010302 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 145 (513)
Q Consensus 66 ~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (513)
+++|....+-+.....-....+|.++.|+|.|.+|+.|..-.++++||+++.++-.. ..--..|++.|+
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-----------anPd~qht~ai~ 265 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-----------ANPDDQHTGAIT 265 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----------cCccccccccee
Confidence 999996222222112224567899999999999999999999999999999765111 112235889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCce
Q 010302 146 AIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNA 225 (513)
Q Consensus 146 ~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i 225 (513)
++.+|+.|+.-+++|.||.|++||=-+++|+.++.. .+.+..++++
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~----------------------------------AH~gsevcSa 311 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN----------------------------------AHGGSEVCSA 311 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh----------------------------------hcCCceeeeE
Confidence 999999999999999999999999988888776643 2344567889
Q ss_pred EEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC--ccchhheeccccC------------------CcCCcceeeee
Q 010302 226 IFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE--NNDRFLRIALYQG------------------DRSSKKVRKIP 284 (513)
Q Consensus 226 ~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~--~~~r~~~~~~~~~------------------~~~~~~~~~~~ 284 (513)
.|..+|+||++...+. +++|.+.+|+++..+-+.. +...+..-++|.. ........++-
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence 9999999999987775 8999999999999884321 1222222233331 11111111111
Q ss_pred ccccccccCCC--CCCCCeEEEeeecCceEEEEecCC
Q 010302 285 AAAANANESKE--PFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 285 ~~~~~~~~~~~--~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
-..+ .....| +.|..-.|.|+++|.|.+.|.|+.
T Consensus 392 slgH-n~a~R~i~HSP~~p~FmTcsdD~raRFWyrr~ 427 (430)
T KOG0640|consen 392 SLGH-NGAVRWIVHSPVEPAFMTCSDDFRARFWYRRV 427 (430)
T ss_pred ccCC-CCCceEEEeCCCCCceeeecccceeeeeeecc
Confidence 1111 111221 235555799999999999998873
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-23 Score=189.62 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=206.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|.|+++|++|++++.|.+++|||..+++..+.+. .....+..++|.......+..|...|.+|+..++. +.+.++.
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~--dNkylRY 95 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH--DNKYLRY 95 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEecCCceEEEccCCCCCceEEEEee--cCceEEE
Confidence 5799999999999999999999999999888876 45567888888877774444444459999999998 8999999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|.+++.+|-++.++|++.|++|++||++..++ ...+ +...-..++|.|+|-++|+++
T Consensus 96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c--------------qg~l--~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC--------------QGLL--NLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--------------ceEE--ecCCCcceeECCCCcEEEEec
Confidence 999999999999999999999999999999999987443 1111 222334689999999999999
Q ss_pred CCCcEEEEEcCCC--eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 161 PDRRIRVFWFRTG--KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 161 ~D~~I~iwd~~tg--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
....|++||++.- ....++. + .......++.+.|+++|++|+.++
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~------------------i---------------~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFS------------------I---------------TDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred CCCeEEEEEecccCCCCceeEc------------------c---------------CCCCccceeeeEEcCCCCEEEEEe
Confidence 8889999998862 2222221 1 112234567889999999999998
Q ss_pred ccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 239 LLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 239 ~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
..+ ++++|.-+|.+...+.......+.-.-+.| -||+..+.+|.+|++|++|.-
T Consensus 207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f-------------------------tPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 207 NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF-------------------------TPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE-------------------------CCCCcEEEEecCCCcEEEEEc
Confidence 877 899999999988777544322221111111 389999999999999999988
Q ss_pred CCCCCCcccCCCcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCeEEEEEeCCC
Q 010302 318 REPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPE 376 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~l~~~ 376 (513)
++....-+..+. |..| ..-.+..+....+-|.--.+++.+..+
T Consensus 262 ~tg~~v~~~~~~----~~~~------------~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 262 ETGKKVAVLRGP----NGGP------------VSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred CCCcEeeEecCC----CCCC------------ccccccCCceeeeeecCceEEEEeccc
Confidence 655422111000 1111 111235566667777777787777653
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=3.6e-26 Score=208.88 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=178.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-cceEE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPLIS 80 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~-~~i~~ 80 (513)
++.-|.+.|++||.|.+|+|||+++++++.++. .|...+..+.|+.. ++++++.|.+|.+||+...+. .+.+.
T Consensus 242 CLqyd~rviisGSSDsTvrvWDv~tge~l~tli--hHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 242 CLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI--HHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred eeeccceEEEecCCCceEEEEeccCCchhhHHh--hhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHH
Confidence 344577899999999999999999999987765 67788888888765 999999999999999863221 23344
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|.+.|..+.| +.++++++|.|.+|++|++.+ .+.+..+.+|+..|-|+.+ .|+++++||
T Consensus 316 LvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st--------------~efvRtl~gHkRGIAClQY--r~rlvVSGS 377 (499)
T KOG0281|consen 316 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTST--------------CEFVRTLNGHKRGIACLQY--RDRLVVSGS 377 (499)
T ss_pred Hhhhhhheeeecc--ccceEEEecCCceEEEEeccc--------------eeeehhhhcccccceehhc--cCeEEEecC
Confidence 5699999999999 556999999999999999987 4568889999999998888 899999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|.+||+||+..|++++.+++|.+.+.++.+ | .+.|++|.++
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRF------------------------------------d--~krIVSGaYD 419 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRF------------------------------------D--NKRIVSGAYD 419 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheee------------------------------------c--Cceeeecccc
Confidence 9999999999999999999999988776654 3 3567888877
Q ss_pred c-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 241 G-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 241 g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
| |||||+.++.--+.... .+....+.- ...-+ ...+-|..-+.+.+.+-.|.||.
T Consensus 420 GkikvWdl~aaldpra~~~---~~Cl~~lv~-----hsgRV-------------FrLQFD~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPAS---TLCLRTLVE-----HSGRV-------------FRLQFDEFQIISSSHDDTILIWD 475 (499)
T ss_pred ceEEEEecccccCCccccc---chHHHhhhh-----cccee-------------EEEeecceEEEeccCCCeEEEEE
Confidence 6 99999987653322211 111111100 00001 11145667788888888999996
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1.1e-23 Score=201.93 Aligned_cols=267 Identities=18% Similarity=0.202 Sum_probs=206.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|++++|++++.|+.|++|++.+++....+. .|...+..+.|++++. .+++++.++.|++||+. ..+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~~~--~~~~~~~ 88 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGT--YLASGSSDKTIRLWDLE--TGECVRT 88 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--cCCcceeEEEECCCCC--EEEEEcCCCeEEEEEcC--cccceEE
Confidence 4789999999999999999999999877555443 6777788999999886 78888889999999997 6678888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+..|...+.++.|+|+++++++++.++.+.+||+++. +....+..|...+.+++|+|+++++++++
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--------------KCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--------------EEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 8899999999999999999999998999999999752 34555667888999999999999999888
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----eccc--cCCCCCCceEEcCCCCE
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EIEK--TETAPPSNAIFDESSNF 233 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~~~--~~~~~~~~i~fd~~g~~ 233 (513)
.|+.|++||+++++.+..+..+...+..+.+.+.....+.... ...+.+.. .+.. .....+..+.|++++++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence 8999999999999999888887777888888776422222221 12222111 1111 12235678899999999
Q ss_pred EEEcc-ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 234 LIYAT-LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 234 li~~s-~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
++.++ ...|++||+.+++.+..+..+... +..+.+ .+++.++++++.++.+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----------------i~~~~~-----------~~~~~~l~~~~~d~~i 285 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNS-----------------VTSLAW-----------SPDGKRLASGSADGTI 285 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCc-----------------EEEEEE-----------CCCCCEEEEecCCCeE
Confidence 99888 556999999998888777544321 122222 2556778999999999
Q ss_pred EEEe
Q 010302 313 YLFS 316 (513)
Q Consensus 313 ~i~~ 316 (513)
.+|.
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9994
No 63
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=5.4e-25 Score=208.73 Aligned_cols=271 Identities=14% Similarity=0.125 Sum_probs=206.4
Q ss_pred eEecCCC-EEEEEeCCCcEEEEEccC--CceeE------EEEc----CCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEE
Q 010302 2 QVSVDGL-LCCSISNDKSVKIYDVVN--YDMML------MIRL----PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIY 68 (513)
Q Consensus 2 ~~s~dg~-~las~s~D~~v~iwd~~~--~~~~~------~~~l----~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw 68 (513)
+|+|-.. .+|+++.|-+.++|++.. ..... .+.. ......+.++.|+.++. +|++|+.||.+++|
T Consensus 185 ~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG~~~G~~riw 262 (524)
T KOG0273|consen 185 AWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATGSEDGEARIW 262 (524)
T ss_pred ecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEeecCcEEEEE
Confidence 6888666 899999999999999974 11111 1111 11235689999999999 99999999999999
Q ss_pred ecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCC---------Cc-----------------
Q 010302 69 DARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP---------ES----------------- 122 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~---------~~----------------- 122 (513)
+. .+..+.++..|++||.++.|+..|++|++++.|+++-+||..+++.- ..
T Consensus 263 ~~---~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~ 339 (524)
T KOG0273|consen 263 NK---DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG 339 (524)
T ss_pred ec---CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence 98 68899999999999999999999999999999999999998654331 01
Q ss_pred -ceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccc
Q 010302 123 -EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 201 (513)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 201 (513)
+.++......+..++.+|.+.|.++.|+|.|.+|+++|.|++++||+.....+...+..|.+.|..+.|++..
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g------ 413 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG------ 413 (524)
T ss_pred eEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC------
Confidence 2223344567788889999999999999999999999999999999999988888888887777666666651
Q ss_pred ccccceeeeeeeccccCCCCCCceEEcC-CCCEEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcc
Q 010302 202 IDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 279 (513)
Q Consensus 202 ~~~~~r~~~e~e~~~~~~~~~~~i~fd~-~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~ 279 (513)
.+.+.+ .+-.|++++.+ .+++||+..|.++.++-+|..++- .++
T Consensus 414 ----------------------~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy--sva---------- 459 (524)
T KOG0273|consen 414 ----------------------PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY--SVA---------- 459 (524)
T ss_pred ----------------------CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE--EEE----------
Confidence 122333 23345555554 599999999999999965542332 222
Q ss_pred eeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCcccCCCcCcc
Q 010302 280 VRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIF 333 (513)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 333 (513)
+ .+|+..+|+|+-|+.+.||+.++.......++.-.||
T Consensus 460 -----f-----------S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~If 497 (524)
T KOG0273|consen 460 -----F-----------SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIF 497 (524)
T ss_pred -----e-----------cCCCcEEEecCCCCeeEeccccchheeEeecCCCeEE
Confidence 2 3889999999999999999988765443333333334
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=219.47 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=202.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|..-+++++-..|+|++||.+-+.++..+ ..|.++|..+.|+|... +++||+.|..|++|+.+ +.+++.+
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rF--deHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnYk--~rrclft 88 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF--DEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNYK--TRRCLFT 88 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhh--hccCCccceeeecCCCC--eEEecCCccEEEEEecc--cceehhh
Confidence 589999999999999999999999887776664 48999999999999988 99999999999999998 8899999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|.+.|..+.|++...+++|+|.|.+|+||+-.+ ++++..+.+|...|.|.+|+|....++++|
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs--------------r~~iavltGHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS--------------RKCIAVLTGHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccC--------------CceEEEEecCceEEEeeccCCccceEEEec
Confidence 999999999999999999999999999999998876 667999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCe-----------------------------EEEEecccHHHHHHHhcCCCCccccccccccceeeee
Q 010302 161 PDRRIRVFWFRTGK-----------------------------LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 211 (513)
Q Consensus 161 ~D~~I~iwd~~tg~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e 211 (513)
.|.+|||||+.--+ ..+.+++|...+.-..++++-.+.+.+.| +|.+.++
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D-DRqVKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC-cceeeEE
Confidence 99999999985321 12244555555555555554333343332 3333333
Q ss_pred e---------eccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheecc
Q 010302 212 K---------EIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIAL 270 (513)
Q Consensus 212 ~---------e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~ 270 (513)
+ +-.......++++.|+|.-+.|++.+.++ |+|||+.....++++..+ +.||+.++.
T Consensus 234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRFW~laa 300 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRFWILAA 300 (1202)
T ss_pred EeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeEEEEEe
Confidence 2 22223345678899999999999988765 999999999999998653 468988874
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-24 Score=210.48 Aligned_cols=236 Identities=12% Similarity=0.179 Sum_probs=196.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|.|+|...+++++-..|.|.||+.++..++..+... ..++....|.+.-+ .+++|+.|..|+||+.+ +.+.+..
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~--~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfnyn--t~ekV~~ 92 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--EVPVRAAKFIARKN--WIVTGSDDMQIRVFNYN--TGEKVKT 92 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeeeeec--ccchhhheeeeccc--eEEEecCCceEEEEecc--cceeeEE
Confidence 568899999999999999999999998888887744 34566666665555 89999999999999998 9999999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s~ 159 (513)
+..|.+.|.+++.+|.-.+++|+|.|-+|++||-+.. -.+.+++.+|...|.+++|+| |.+.+|++
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-------------WACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-------------eeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 9999999999999999999999999999999987652 345678899999999999999 66799999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC--CCCEEEEc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--SSNFLIYA 237 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~--~g~~li~~ 237 (513)
|.|++|++|.+.+..+..++++|...+. ++.|-+ +..||+++
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN------------------------------------~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVN------------------------------------CVDYYTGGDKPYLISG 203 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcc------------------------------------eEEeccCCCcceEEec
Confidence 9999999999999999889888764433 444443 33599999
Q ss_pred ccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 238 TLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 238 s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
+++ .|||||.+|.+|++++.+|..++.+. .|. +.=-+++||++|+.++||+
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v---~fh-------------------------p~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFV---FFH-------------------------PELPIIISGSEDGTVRIWN 255 (794)
T ss_pred CCCceEEEeecchHHHHHHhhcccccceEE---Eec-------------------------CCCcEEEEecCCccEEEec
Confidence 877 59999999999999998877443322 222 3334699999999999998
Q ss_pred cCC
Q 010302 317 RRE 319 (513)
Q Consensus 317 ~~~ 319 (513)
..+
T Consensus 256 s~T 258 (794)
T KOG0276|consen 256 SKT 258 (794)
T ss_pred Ccc
Confidence 775
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=3.4e-23 Score=198.94 Aligned_cols=240 Identities=17% Similarity=0.188 Sum_probs=172.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcc----------------------------
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKA---------------------------- 53 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~---------------------------- 53 (513)
.|||.|.|+|+|...|+|||||....+.+..-+++...+++..++|+.++.+
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 6899999999999999999999976444433333333344444444444443
Q ss_pred ---------------eEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCC
Q 010302 54 ---------------GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ 118 (513)
Q Consensus 54 ---------------~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 118 (513)
.-++++++|++|.+|+-. ..+...++..|..-|.|+.|+|||.+|++++.||.+.+||=.+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP--PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt-- 221 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP--PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT-- 221 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCC--CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC--
Confidence 345577777777777654 4555666778999999999999999999999999999998877
Q ss_pred CCCcceeeeecCCccccccc---cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHH----hc
Q 010302 119 FPESEVSFRLKSDTNLFEIL---KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL----QR 191 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~----~~ 191 (513)
++.+..+. .|++.|.+++|+||++.++++|.|.+++|||+.+.++++++.-... +..+ .|
T Consensus 222 ------------ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lW 288 (603)
T KOG0318|consen 222 ------------GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLW 288 (603)
T ss_pred ------------ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc-hhceEEEEEE
Confidence 44566665 7999999999999999999999999999999999999998864433 1111 12
Q ss_pred CCCCccccccccccceeeeee----eccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCC
Q 010302 192 SDAPLYRLEAIDFGRRMAVEK----EIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 192 ~~~~~~~l~~~~~~~r~~~e~----e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~ 258 (513)
..+.+..+....+-..+..+. ..-...+..++.+..+++|++|++++++| |.-|+..+|..-+..|.
T Consensus 289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK 360 (603)
T ss_pred eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence 233222221111111111110 00112345677889999999999999998 88999999988887764
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=5.7e-25 Score=209.39 Aligned_cols=267 Identities=13% Similarity=0.106 Sum_probs=204.3
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccC-CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVN-YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~-~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
+.|.| .+.+|++++.|+.|+||++.. +.+++.+ .+|..+|..++|+.++. -+.|++.|+.|++||++ +++++
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf--~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lKlwDtE--TG~~~ 293 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF--KGHRKPVRDASFNNCGT--SFLSASFDRFLKLWDTE--TGQVL 293 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhh--hcchhhhhhhhccccCC--eeeeeecceeeeeeccc--cceEE
Confidence 35677 899999999999999999987 5555554 48999999999999998 78899999999999998 89999
Q ss_pred EEeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
..+. -...+.|+.|+|++ +.|++|+.|+.|+.||+++ ++.+++...|-+.|..+.|-++|++++
T Consensus 294 ~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs--------------~kvvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 294 SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS--------------GKVVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc--------------hHHHHHHHhhhhheeeeEEccCCceEe
Confidence 8885 33567999999988 8899999999999999998 455778888999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecc-cHHHHHHHhcCCCCccccccccccceeeeee-----------eccc-cCCCCCCc
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDE-SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----------EIEK-TETAPPSN 224 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----------e~~~-~~~~~~~~ 224 (513)
+.+.|++++||+.+..-.++.+-. +.-...++..++...+...-. .+.++.+-. .++. ...+-.+.
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCHhhhhcceeccCceee
Confidence 999999999999998776654322 222233444444322221111 122222211 1111 12234467
Q ss_pred eEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEE
Q 010302 225 AIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLL 303 (513)
Q Consensus 225 i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 303 (513)
+.|+|+|++|++|+.+| +.+||..|-+++..+..++. ....+.|++-.+.-+
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~---------------------------~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ---------------------------PCIGVDWHPVEPSKV 490 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc---------------------------ceEEEEecCCCccee
Confidence 89999999999998887 89999999888888766541 023345777788889
Q ss_pred EeeecCceEEEEe
Q 010302 304 CCAFKRHRIYLFS 316 (513)
Q Consensus 304 ~s~~~~~~i~i~~ 316 (513)
||++-+|.|+||.
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999993
No 68
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.6e-23 Score=213.83 Aligned_cols=230 Identities=9% Similarity=0.081 Sum_probs=169.1
Q ss_pred EeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCC-CcceEEEEeCCCCeEEEEecCCCC------CcceEEeecCC
Q 010302 13 ISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGD-VKAGLAISDRNSSFVHIYDARADS------NEPLISKKVHM 85 (513)
Q Consensus 13 ~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~-~~~~~l~s~~~d~~I~iwd~~~~~------~~~i~~~~~h~ 85 (513)
|+.++.|++|+..+... ...+.+|...|.+++|+|+ +. ++++++.|++|++||+.... ..++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~--v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP--VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCce--EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 45678889998866543 3445689999999999997 45 89999999999999996221 12455678999
Q ss_pred CCeEEEEEcCCCCE-EEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCc
Q 010302 86 GPVKVMRYNPVFDT-VISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 86 ~~V~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~ 164 (513)
..|.+++|+|++.. |++++.|++|++||+++.+ .+..+. |...|.+++|+|+|++|++++.|+.
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--------------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~ 190 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--------------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH 190 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--------------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCE
Confidence 99999999998875 5789999999999998743 233333 5567999999999999999999999
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL---- 240 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~---- 240 (513)
|+|||+++++.+.++.+|...+.. ..+....|++++++|++++..
T Consensus 191 IrIwD~Rsg~~i~tl~gH~g~~~s-------------------------------~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 191 MHIIDPRKQEIASSFHIHDGGKNT-------------------------------KNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EEEEECCCCcEEEEEecccCCcee-------------------------------EEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 999999999998887654422100 001122456788888886544
Q ss_pred -ceEEEEccc-CcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 241 -GIKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 241 -gi~v~d~~t-~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.|++||+.+ ++.+..+..+.. .. .+...+.+++++++++|..|+.||+|.-.
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~-~~-------------------------~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNA-SA-------------------------PLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCC-cc-------------------------ceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 499999984 555555432220 00 11122335779999999999999999754
No 69
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=185.38 Aligned_cols=230 Identities=16% Similarity=0.105 Sum_probs=170.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC-CCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA-DSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~-~~~~~i~ 79 (513)
|+|||.|++||++|.|.++.||.-..++....-.+.+|...+.+++|++++. +|++++.|+.+.||.+.. +..+++.
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~a 144 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIA 144 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEe
Confidence 6899999999999999999999988766666666779999999999999999 999999999999999862 2356788
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.++.|...|..+.|+|...+|+|+|.|.+|++|.-.... .-.+..++.+|.+.|++++|+|.|..|+++
T Consensus 145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-----------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-----------DWECVQTLDGHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC-----------CeeEEEEecCccceEEEEEecCCCceEEEe
Confidence 899999999999999999999999999999999654211 135688899999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeee------------ccccCCCCCCceEE
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE------------IEKTETAPPSNAIF 227 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e------------~~~~~~~~~~~i~f 227 (513)
+.|++++||...+.-.. .|...+..+.+. +.+..-...+..-|+..+.. ........++++.|
T Consensus 214 sdD~tv~Iw~~~~~~~~----~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDLSG----MHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred cCCcceEeeeeccCcch----hcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 99999999985532110 011111112222 11111111111122222110 11112236789999
Q ss_pred cCC-CCEEEEccccc-eEEEEcc
Q 010302 228 DES-SNFLIYATLLG-IKIVNLH 248 (513)
Q Consensus 228 d~~-g~~li~~s~~g-i~v~d~~ 248 (513)
+|. .+.|++++++| |++|.+.
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCceeecCCCceEEEEEec
Confidence 994 67888888877 7899764
No 70
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.9e-24 Score=208.33 Aligned_cols=210 Identities=15% Similarity=0.165 Sum_probs=180.4
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
|-+.-+++++|++|..||||+..+++.+..+. .|+.-+.++..+|... ++++++.|-+|++||.+ ....+.+++.
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe--AH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we-~~wa~~qtfe 137 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE--AHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWE-NEWACEQTFE 137 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEee--ccccceeeeeecCCCC--eEEecCCccEEEEeecc-CceeeeeEEc
Confidence 44556789999999999999999998877766 8999999999999877 99999999999999996 4678889999
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC--CEEEEE
Q 010302 83 VHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG--KQFSIT 159 (513)
Q Consensus 83 ~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg--~~l~s~ 159 (513)
+|+..|.+++|+| |.+.|+|++-|++|++|.+.+ ..+.+++.+|...|+|+++-+-| .+|++|
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs--------------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS--------------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCC--------------CCCceeeeccccCcceEEeccCCCcceEEec
Confidence 9999999999999 788999999999999998866 56678899999999999998754 599999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
+.|.+|+|||..|..|++++++|... +..++|+|.=..+++|+.
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeGHt~N------------------------------------vs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEGHTNN------------------------------------VSFVFFHPELPIIISGSE 247 (794)
T ss_pred CCCceEEEeecchHHHHHHhhccccc------------------------------------ceEEEecCCCcEEEEecC
Confidence 99999999999999999999887643 346678888889999998
Q ss_pred cc-eEEEEcccCcEEEEeCCCCccchhheec
Q 010302 240 LG-IKIVNLHTNKVSRILGKVENNDRFLRIA 269 (513)
Q Consensus 240 ~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~ 269 (513)
+| +|||+..|-++-.++.- +-.|.+.++
T Consensus 248 DGTvriWhs~Ty~lE~tLn~--gleRvW~I~ 276 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKTLNY--GLERVWCIA 276 (794)
T ss_pred CccEEEecCcceehhhhhhc--CCceEEEEe
Confidence 87 99999988776665532 234555555
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2e-23 Score=184.44 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=190.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|+.+|..||+++.|+++++|++...+........+|...+..++|.|.... ++++++.|.+|++||++ +++++..
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd~r--~~k~~~~ 102 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWDIR--SGKCTAR 102 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEEec--cCcEEEE
Confidence 57999999999999999999999987766666666788888999999876554 77888889999999999 8899888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc---------------------------ceeeeecCCcc
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES---------------------------EVSFRLKSDTN 133 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------------~~~~~~~~~~~ 133 (513)
+...... .-+.|+|+|++++.++.|..|...|.++.+.... .-..++..-++
T Consensus 103 i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp 181 (313)
T KOG1407|consen 103 IETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP 181 (313)
T ss_pred eeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc
Confidence 8644444 4688999999999999999999999887655321 11123335677
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeee
Q 010302 134 LFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE 213 (513)
Q Consensus 134 ~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e 213 (513)
+..+..|.....||.|+|+|++||+|+.|..+.+||+...-|++.+.-
T Consensus 182 v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-------------------------------- 229 (313)
T KOG1407|consen 182 VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-------------------------------- 229 (313)
T ss_pred ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc--------------------------------
Confidence 788889999999999999999999999999999999988777665531
Q ss_pred ccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccccccc
Q 010302 214 IEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 292 (513)
Q Consensus 214 ~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
...++..+.|+.+|++|++++.+- |-|=+..||..+..+.-.. ....
T Consensus 230 ----ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~----------------------------~t~t 277 (313)
T KOG1407|consen 230 ----LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG----------------------------PTFT 277 (313)
T ss_pred ----ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC----------------------------Ccee
Confidence 113566899999999999999774 7788888998887764322 1345
Q ss_pred CCCCCCCCeEEEeeecC
Q 010302 293 SKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 293 ~~~~~~d~~l~~s~~~~ 309 (513)
++|+|+.+.|.-++.++
T Consensus 278 VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 278 VAWHPKRPLLAYACDDK 294 (313)
T ss_pred EEecCCCceeeEEecCC
Confidence 67887777766555544
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=6.2e-23 Score=225.82 Aligned_cols=236 Identities=15% Similarity=0.214 Sum_probs=173.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC----ce--eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY----DM--MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~----~~--~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
++|+|+|++||+|+.|++|+|||+.+. .. .....+. +...+..+.|++.... .+++++.|++|++||+. +
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~--~ 564 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVA--R 564 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECC--C
Confidence 579999999999999999999998542 11 0111222 2356788888875332 78999999999999997 7
Q ss_pred CcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc-CC
Q 010302 75 NEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS-PD 152 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pd 152 (513)
++.+..+.+|...|++++|+| ++.+|++|+.|++|++||+++. ..+..+.. ...+.++.|+ ++
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--------------~~~~~~~~-~~~v~~v~~~~~~ 629 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--------------VSIGTIKT-KANICCVQFPSES 629 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--------------cEEEEEec-CCCeEEEEEeCCC
Confidence 788888999999999999997 7899999999999999999773 33444443 3578999995 57
Q ss_pred CCEEEEEeCCCcEEEEEcCCCe-EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
|.+|++|+.|+.|++||+++++ .+.++.+|. ..+..+.|. ++
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~------------------------------------~~V~~v~f~-~~ 672 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS------------------------------------KTVSYVRFV-DS 672 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCC------------------------------------CCEEEEEEe-CC
Confidence 9999999999999999998765 333333221 233466786 67
Q ss_pred CEEEEccccc-eEEEEcccC------cEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEE
Q 010302 232 NFLIYATLLG-IKIVNLHTN------KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLC 304 (513)
Q Consensus 232 ~~li~~s~~g-i~v~d~~t~------~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (513)
++|++++.++ |++||+.++ +.++.+.+|.....++ .+ .+++.+++
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v-----------------~~-----------s~~~~~la 724 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV-----------------GL-----------SVSDGYIA 724 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE-----------------EE-----------cCCCCEEE
Confidence 7888887665 999999753 3444544433111111 11 24567899
Q ss_pred eeecCceEEEEecCCC
Q 010302 305 CAFKRHRIYLFSRREP 320 (513)
Q Consensus 305 s~~~~~~i~i~~~~~~ 320 (513)
+|+.|+++++|....+
T Consensus 725 sgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 725 TGSETNEVFVYHKAFP 740 (793)
T ss_pred EEeCCCEEEEEECCCC
Confidence 9999999999986643
No 73
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.4e-22 Score=207.58 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=154.3
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEE-----------EEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEec
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLM-----------IRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDA 70 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~-----------~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~ 70 (513)
.++|+..+++++.+.....|+...+..+.. ..+.+|.+.|..+.|+| ++. ++++++.|++|++||+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASEDGTIMGWGI 105 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeCCCEEEEEec
Confidence 456777778888888888888765432211 12457888999999999 555 8999999999999998
Q ss_pred CCCC-----CcceEEeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 71 RADS-----NEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 71 ~~~~-----~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
.... ..++..+.+|...|.+++|+|++ ++|++++.|++|+|||+++ +..+..+..|...|
T Consensus 106 ~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t--------------g~~~~~l~~h~~~V 171 (493)
T PTZ00421 106 PEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER--------------GKAVEVIKCHSDQI 171 (493)
T ss_pred CCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC--------------CeEEEEEcCCCCce
Confidence 6221 14677888999999999999975 7999999999999999977 34466677899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCc
Q 010302 145 SAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSN 224 (513)
Q Consensus 145 ~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~ 224 (513)
.+++|+|+|++|++++.|++|++||+++++.+..+..|.. .....
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~-----------------------------------~~~~~ 216 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS-----------------------------------AKSQR 216 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC-----------------------------------CcceE
Confidence 9999999999999999999999999999998877754321 11224
Q ss_pred eEEcCCCCEEEEcc-----ccceEEEEcccCc
Q 010302 225 AIFDESSNFLIYAT-----LLGIKIVNLHTNK 251 (513)
Q Consensus 225 i~fd~~g~~li~~s-----~~gi~v~d~~t~~ 251 (513)
+.|.+++..+++.. ...|++||+.+.+
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 56777777776543 2359999997643
No 74
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=2.1e-22 Score=206.16 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=160.4
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCce-----eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDM-----MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~-----~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
++|+| ++++||+|+.|++|++||+.++.. .....+.+|...|..+.|+|.... ++++++.|++|+|||+. +
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~--t 157 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVE--R 157 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECC--C
Confidence 57999 899999999999999999986532 123345688999999999997633 88899999999999998 7
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc-eEEEEEcCCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT-VSAIEVSPDG 153 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~spdg 153 (513)
++.+..+.+|...|.+++|+|++.+|++++.|++|++||++++ ..+..+..|.+. +..+.|++++
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg--------------~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG--------------TIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC--------------cEEEEEecCCCCcceEEEEcCCC
Confidence 7888889999999999999999999999999999999999873 445666677654 4578899998
Q ss_pred CEEEEEe----CCCcEEEEEcCCCe-EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEc
Q 010302 154 KQFSITS----PDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 228 (513)
Q Consensus 154 ~~l~s~s----~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd 228 (513)
..+++++ .|+.|++||+++.. .+..... ..........|+
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~-----------------------------------d~~~~~~~~~~d 268 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL-----------------------------------DQSSALFIPFFD 268 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEecc-----------------------------------CCCCceEEEEEc
Confidence 8877654 47999999998754 2222110 000122345799
Q ss_pred CCCCEEEEcc--ccceEEEEcccCcEEEEe
Q 010302 229 ESSNFLIYAT--LLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 229 ~~g~~li~~s--~~gi~v~d~~t~~~v~~~ 256 (513)
+++++|+.++ +..|++||+.+++.+...
T Consensus 269 ~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 269 EDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 9999988875 345999999999887765
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.4e-24 Score=189.52 Aligned_cols=236 Identities=11% Similarity=0.112 Sum_probs=175.7
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+||++ .+.+++++.||+++|||+. ........++.|...|.++.|.+-....++ +++.|++|++|+.. ..+.+.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l-tsSWD~TiKLW~~~--r~~Sv~ 141 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFL-TSSWDGTIKLWDPN--RPNSVQ 141 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEE-eeccCCceEeecCC--CCcceE
Confidence 578875 4667888899999999964 233344445688899999999887666444 44999999999997 788899
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEE
Q 010302 80 SKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFS 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~ 157 (513)
++.+|...|...+|+| ..++++++|.|+++++||++.. ++ ...+..|...+.++.|+. +.+.++
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-------------gk-~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-------------GK-FMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-------------Cc-eeEEEeccceeEeecccccCCcEEE
Confidence 9999999999999999 6889999999999999998762 23 334778999999999998 567889
Q ss_pred EEeCCCcEEEEEcCCCe-EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC-EEE
Q 010302 158 ITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLI 235 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~-~li 235 (513)
||+.|+.||+||++.-+ .+..+.+|. ..+..+.|+|.-. .|+
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~------------------------------------~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHG------------------------------------LAVRKVKFSPHHASLLA 251 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCc------------------------------------eEEEEEecCcchhhHhh
Confidence 99999999999998754 233332221 1223566777655 455
Q ss_pred Ecccc-ceEEEEcccCc-EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEE
Q 010302 236 YATLL-GIKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIY 313 (513)
Q Consensus 236 ~~s~~-gi~v~d~~t~~-~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~ 313 (513)
+++++ .++|||...+. ++.++..|. .+ .-...|+.-+|..+|+.+-|..+|
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~Ht------EF---------------------v~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHT------EF---------------------VCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred hccccceEEecccccchhhhhhhhccc------eE---------------------EeccccccccCceeeeccccccee
Confidence 66655 69999997543 333333332 11 112234466899999999999999
Q ss_pred EEec
Q 010302 314 LFSR 317 (513)
Q Consensus 314 i~~~ 317 (513)
||+.
T Consensus 305 Vw~p 308 (311)
T KOG0277|consen 305 VWNP 308 (311)
T ss_pred eecc
Confidence 9963
No 76
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=3.9e-23 Score=186.08 Aligned_cols=282 Identities=14% Similarity=0.106 Sum_probs=212.2
Q ss_pred CeEecCCCEEEEEe--CCCcEEEEEccCC------ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 1 MQVSVDGLLCCSIS--NDKSVKIYDVVNY------DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~dg~~las~s--~D~~v~iwd~~~~------~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
|+|.|.++-++.+. .++...+=-+..+ .....+.+.+|++.|..+.|+|++. +++|++.|..|.+|++.
T Consensus 1 m~~~~~~n~~~~v~~a~~~~~q~s~~~~~~~rts~l~ap~m~l~gh~geI~~~~F~P~gs--~~aSgG~Dr~I~LWnv~- 77 (338)
T KOG0265|consen 1 MAWHPRKNSLFSVYPAKRGRSQISALALGKQRTSSLQAPIMLLPGHKGEIYTIKFHPDGS--CFASGGSDRAIVLWNVY- 77 (338)
T ss_pred CCccCCCCceeeeEecccccccchhhhhcccccccccchhhhcCCCcceEEEEEECCCCC--eEeecCCcceEEEEecc-
Confidence 45666665555553 3444433212111 1223455778999999999999888 99999999999999975
Q ss_pred CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 73 DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 73 ~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
+..+-...+++|.+.|..+.|.++++.++|++.|.+++.||.++ ++..+.++.|..-|++++-+.-
T Consensus 78 gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t--------------G~~~rk~k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 78 GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET--------------GKRIRKHKGHTSFVNSLDPSRR 143 (338)
T ss_pred ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc--------------ceeeehhccccceeeecCcccc
Confidence 35566677889999999999999999999999999999999988 5668889999999999996666
Q ss_pred CCE-EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 153 GKQ-FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 153 g~~-l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
|.. +.+++.|+++++||+++...++++.. ...++.+.|..++
T Consensus 144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-------------------------------------kyqltAv~f~d~s 186 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-------------------------------------KYQLTAVGFKDTS 186 (338)
T ss_pred CCeEEEecCCCceEEEEeecccchhhcccc-------------------------------------ceeEEEEEecccc
Confidence 654 45788899999999999888877643 1234678898888
Q ss_pred CEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccC-------------------CcCCcceeeeeccccc--
Q 010302 232 NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQG-------------------DRSSKKVRKIPAAAAN-- 289 (513)
Q Consensus 232 ~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~-------------------~~~~~~~~~~~~~~~~-- 289 (513)
.-++++..++ ||+||+..+.++.++.+|.-.+.-+.++-+.. .|...++...+.+-++
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 8888887664 99999999999998866543444444433321 2222334444443333
Q ss_pred --cccCCCCCCCCeEEEeeecCceEEEEecCCCCCCcccCCCcCccCCCC
Q 010302 290 --ANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKP 337 (513)
Q Consensus 290 --~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~p 337 (513)
.+--+|. ++..-+..|+.|+.+|+|.-.......+.+++....|+..
T Consensus 267 knlL~csws-p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 267 KNLLKCSWS-PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVD 315 (338)
T ss_pred hhcceeecc-CCCCccccccccceEEEeecccccEEEEcCCcceeEEEee
Confidence 3344674 8888899999999999999888888899999999998873
No 77
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.91 E-value=1.2e-22 Score=195.29 Aligned_cols=307 Identities=16% Similarity=0.187 Sum_probs=213.7
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee---cC
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK---VH 84 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~---~h 84 (513)
-+++|||+|++|.+|+=.-++.... +..|..-++++.++|++. .+++.+.|++|.+||-. +++.+..+. +|
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s--~r~HskFV~~VRysPDG~--~Fat~gsDgki~iyDGk--tge~vg~l~~~~aH 234 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSS--FREHSKFVNCVRYSPDGS--RFATAGSDGKIYIYDGK--TGEKVGELEDSDAH 234 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeec--ccccccceeeEEECCCCC--eEEEecCCccEEEEcCC--CccEEEEecCCCCc
Confidence 3689999999999999875554444 447888999999999998 99999999999999998 899999998 99
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc--------------------ce---------eeeecCCcccc
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--------------------EV---------SFRLKSDTNLF 135 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~--------------------~~---------~~~~~~~~~~~ 135 (513)
++.|.+++|+||+..|+++|.|.+++|||+.+.++... ++ .++......+.
T Consensus 235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~ 314 (603)
T KOG0318|consen 235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLK 314 (603)
T ss_pred cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhh
Confidence 99999999999999999999999999999987655322 00 02333556778
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-cccHHHHHHHhcCC-CCccc---------------
Q 010302 136 EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSD-APLYR--------------- 198 (513)
Q Consensus 136 ~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~-~~~~~--------------- 198 (513)
.+.+|...|+++..+||+++|.+|+.||.|.-|+..+|..-+.. +.|...+..++... ..++.
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccC
Confidence 88999999999999999999999999999999999987754433 34444444444333 11111
Q ss_pred ----------------ccccccc--ceeeeeeec----------cccCCCCCCceEEcCCCCEEEEccccc-eEEEEccc
Q 010302 199 ----------------LEAIDFG--RRMAVEKEI----------EKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 249 (513)
Q Consensus 199 ----------------l~~~~~~--~r~~~e~e~----------~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t 249 (513)
+.....+ -.++...++ ..+.......++++|++++++.|..++ ++|+.+..
T Consensus 395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 0000000 011111111 112234456789999999999987765 89998876
Q ss_pred CcEEEE--eCCCCccchhheec----------------cccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCce
Q 010302 250 NKVSRI--LGKVENNDRFLRIA----------------LYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHR 311 (513)
Q Consensus 250 ~~~v~~--~g~~~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~ 311 (513)
++++.. .-.+.+.+..+..+ +|.-...........+|.+..+..+|+ |+..++|||+-|..
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs-P~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS-PNNKLVATGSLDTN 553 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC-CCceEEEeccccce
Confidence 553322 11122222222221 222122222222233344447888996 78889999999999
Q ss_pred EEEEecCCCC
Q 010302 312 IYLFSRREPE 321 (513)
Q Consensus 312 i~i~~~~~~~ 321 (513)
|+||+-+-|.
T Consensus 554 Viiysv~kP~ 563 (603)
T KOG0318|consen 554 VIIYSVKKPA 563 (603)
T ss_pred EEEEEccChh
Confidence 9999977665
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.4e-23 Score=204.14 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=192.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC-CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF-IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~-~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|.|+++|++||.|..+|.|.|||..+.+.+..+. . |...|.+++|... .+.+|+.++.|.++|++ ..+...
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~laW~~~----~lssGsr~~~I~~~dvR--~~~~~~ 294 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLAWNSS----VLSSGSRDGKILNHDVR--ISQHVV 294 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEeccCc----eEEEecCCCcEEEEEEe--cchhhh
Confidence 5799999999999999999999999877766655 4 8889999999833 89999999999999998 443333
Q ss_pred -EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEE
Q 010302 80 -SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFS 157 (513)
Q Consensus 80 -~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~ 157 (513)
++.+|...|+.++|++++++++||+.|+.+.|||... ..++..+..|.+.|.+++|+| ....||
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--------------~~p~~~~~~H~aAVKA~awcP~q~~lLA 360 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--------------PEPKFTFTEHTAAVKALAWCPWQSGLLA 360 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC--------------ccccEEEeccceeeeEeeeCCCccCceE
Confidence 4779999999999999999999999999999999855 456788889999999999999 556888
Q ss_pred EEe--CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 158 ITS--PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 158 s~s--~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
+|+ .|++|++||..+|+.+..++. ...++++.|++..+-|+
T Consensus 361 sGGGs~D~~i~fwn~~~g~~i~~vdt-------------------------------------gsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNTGARIDSVDT-------------------------------------GSQVCSLIWSKKYKELL 403 (484)
T ss_pred EcCCCcccEEEEEEcCCCcEeccccc-------------------------------------CCceeeEEEcCCCCEEE
Confidence 877 699999999999999877653 23568899999998888
Q ss_pred Ecc---ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 236 YAT---LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 236 ~~s---~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
++- ...|.||+..+-+.+..+.+|. .|++.+++ .+|+.-+++|..|..+
T Consensus 404 sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~--------------------------SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 404 STHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLAL--------------------------SPDGETIVTGAADETL 455 (484)
T ss_pred EecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEE--------------------------CCCCCEEEEecccCcE
Confidence 763 2349999999988888887766 34544443 4889999999999999
Q ss_pred EEEec
Q 010302 313 YLFSR 317 (513)
Q Consensus 313 ~i~~~ 317 (513)
.+|.-
T Consensus 456 rfw~~ 460 (484)
T KOG0305|consen 456 RFWNL 460 (484)
T ss_pred Eeccc
Confidence 99943
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=8.6e-23 Score=209.35 Aligned_cols=224 Identities=19% Similarity=0.245 Sum_probs=184.9
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
+..-+.+|++|+.|.++++||+.++++.+.+. +|...+..+...+. .+++|+.|.+|++|++. ++..+..+.
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~--n~~~l~l~~ 328 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVT--NGACLNLLR 328 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccCc----eEeeccCCceEEEEecc--CcceEEEec
Confidence 33347899999999999999999999988877 78888888876554 88899999999999998 899999998
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC
Q 010302 83 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D 162 (513)
+|..+|.++..+ +.++++|+.|++|++||+.+ .+++..+.+|..+|.++.+.+. ..+++|+.|
T Consensus 329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~--------------~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT--------------GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred cccccEEEEEec--CCEEEEEecCceEEEEEhhh--------------ceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 999999999996 88999999999999999987 5669999999999999988555 899999999
Q ss_pred CcEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 163 RRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 163 ~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
++|++||++++ +++.++.+|...+..+ .-.+++|+.++.++
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l--------------------------------------~~~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSL--------------------------------------LLRDNFLVSSSADG 433 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccc--------------------------------------ccccceeEeccccc
Confidence 99999999999 8988888766554222 12568899988887
Q ss_pred -eEEEEcccCcEEEEeCCC-CccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 242 -IKIVNLHTNKVSRILGKV-ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 242 -i~v~d~~t~~~v~~~g~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
|++||..++++++++... .+ .++..+. .+ ..+.+++.++++++|..+.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~-----~v~~l~~------------------------~~-~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVG-----GVSALAL------------------------GK-EEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cEEEeecccCceeeeeccCCcc-----cEEEeec------------------------Cc-ceEEEEecCCeeEEEeccc
Confidence 999999999999999763 21 1111110 12 3477788899999997654
No 80
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=8.9e-23 Score=187.52 Aligned_cols=217 Identities=15% Similarity=0.148 Sum_probs=181.7
Q ss_pred cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecC
Q 010302 35 LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 114 (513)
Q Consensus 35 l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~ 114 (513)
+.+|.+.|.++.+.|..+ .+++|+.|++|+|||+. +++...++.+|...|..+++|+...++.+++.|+.|+.||+
T Consensus 147 i~gHlgWVr~vavdP~n~--wf~tgs~DrtikIwDla--tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNE--WFATGSADRTIKIWDLA--TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhccceEEEEeeCCCce--eEEecCCCceeEEEEcc--cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 457888999999999877 99999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCC
Q 010302 115 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA 194 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~ 194 (513)
+. .+.+....+|-+.|.|++.+|.-..|++|+.|.++|+||+++...+.++.+|...
T Consensus 223 e~--------------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~--------- 279 (460)
T KOG0285|consen 223 EY--------------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP--------- 279 (460)
T ss_pred hh--------------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc---------
Confidence 77 4557888899999999999999999999999999999999999999999887644
Q ss_pred CccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccC
Q 010302 195 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQG 273 (513)
Q Consensus 195 ~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~ 273 (513)
+..+.+.+..-.+++++.++ |++||+..|+...++-.|...+|.+.+
T Consensus 280 ---------------------------V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l----- 327 (460)
T KOG0285|consen 280 ---------------------------VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL----- 327 (460)
T ss_pred ---------------------------ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEec-----
Confidence 34556666666788888775 999999999999888776655665444
Q ss_pred CcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCcccCCCcCccC
Q 010302 274 DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFN 334 (513)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 334 (513)
.|+..+|||++.| .|..|.-.+.+-..+.-+++.+-|
T Consensus 328 -----------------------hP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 328 -----------------------HPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred -----------------------CCchhhhhccCCc-cceeccCCccchhhccccccceee
Confidence 2677789999998 788997776554433333444433
No 81
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=1.4e-21 Score=180.29 Aligned_cols=267 Identities=13% Similarity=0.126 Sum_probs=197.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+.+|+.+++|||+.|..-.+|++.+++.... +.+|...|.++.|+.++. ++++|+-+|.|+||... ++.....
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~~s--tg~~~~~ 143 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFKVS--TGGEQWK 143 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCce--EEEecCCCccEEEEEcc--cCceEEE
Confidence 46789999999999999999999999995544 559999999999999999 99999999999999997 7777777
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+...-..+.=+.|+|.+..|+.|+.||.+-+|.+.+ +...+.+.+|+.++++=.|.|||+.++++.
T Consensus 144 ~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~--------------~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 144 LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS--------------QALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred eecccCceEEEEecccccEEEeecCCCcEEEEECCC--------------cceeeEecCCCCCcccccccCCCceEEEEe
Confidence 765666777899999999999999999999998866 244677888999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHH-HHHHHhcCCCC----------cccc------------------------------
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLE-VAQDLQRSDAP----------LYRL------------------------------ 199 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~-~i~~~~~~~~~----------~~~l------------------------------ 199 (513)
.|++|++||.++|+.+..+..... ...++.....+ ...+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 999999999999998887652110 00111100000 0000
Q ss_pred ccc------------cccceeeeee----eccc--cCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC
Q 010302 200 EAI------------DFGRRMAVEK----EIEK--TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 200 ~~~------------~~~~r~~~e~----e~~~--~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
... ....++++.. .+.. .....+..+.|.+ ..+|+.++..| |+.||..+|+++.++-+|.
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCc
Confidence 000 0111222111 0000 1123456778888 67777776665 8999999999999997665
Q ss_pred ccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 261 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 261 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
..+- .+++ .++..++.|+++|+.-.+|-
T Consensus 369 ~~Il--~f~l--------------------------s~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 369 MGIL--DFAL--------------------------SPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hhee--EEEE--------------------------cCCCcEEEEecCCCeEEEEe
Confidence 2222 2221 26888999999999999984
No 82
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=2.9e-21 Score=212.65 Aligned_cols=241 Identities=10% Similarity=0.072 Sum_probs=179.6
Q ss_pred eEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
+|++ ++.+||+++.|++|++||+.+++.+..+ ..|...|..+.|++ ++. ++++++.|++|++||++ ++..+.
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~--~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~--~~~~~~ 612 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM--KEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSIN--QGVSIG 612 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--cCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECC--CCcEEE
Confidence 5665 5789999999999999999988766554 47889999999996 555 89999999999999998 777888
Q ss_pred EeecCCCCeEEEEEc-CCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 80 SKKVHMGPVKVMRYN-PVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~s-p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
.+..+ ..|.++.|+ +++.+|++|+.|+.|++||+++.+ ..+..+.+|...|.+++|+ ++.+|++
T Consensus 613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-------------~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 613 TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-------------LPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------------ccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 87654 689999996 579999999999999999997632 2345667899999999997 7889999
Q ss_pred EeCCCcEEEEEcCCC------eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 159 TSPDRRIRVFWFRTG------KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
++.|++|++||++.+ +.+..+.+|. .....++|+++|+
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~------------------------------------~~i~~v~~s~~~~ 721 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHT------------------------------------NVKNFVGLSVSDG 721 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCC------------------------------------CCeeEEEEcCCCC
Confidence 999999999999753 2333333221 1234678999999
Q ss_pred EEEEccccc-eEEEEcccCcEEEEe--CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 010302 233 FLIYATLLG-IKIVNLHTNKVSRIL--GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 233 ~li~~s~~g-i~v~d~~t~~~v~~~--g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~ 309 (513)
+|++++.++ |++|+......+..+ ...+ ... .+.. ...... .....|. +++..+++|..+
T Consensus 722 ~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~-~~~--~~~~---~~~~~~----------V~~v~ws-~~~~~lva~~~d 784 (793)
T PLN00181 722 YIATGSETNEVFVYHKAFPMPVLSYKFKTID-PVS--GLEV---DDASQF----------ISSVCWR-GQSSTLVAANST 784 (793)
T ss_pred EEEEEeCCCEEEEEECCCCCceEEEecccCC-ccc--cccc---CCCCcE----------EEEEEEc-CCCCeEEEecCC
Confidence 999998775 999998766544332 1111 000 0000 001111 2333453 677788899999
Q ss_pred ceEEEEe
Q 010302 310 HRIYLFS 316 (513)
Q Consensus 310 ~~i~i~~ 316 (513)
+.|.||.
T Consensus 785 G~I~i~~ 791 (793)
T PLN00181 785 GNIKILE 791 (793)
T ss_pred CcEEEEe
Confidence 9999995
No 83
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=2e-21 Score=180.13 Aligned_cols=247 Identities=15% Similarity=0.099 Sum_probs=185.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEc-CCCcceEEEEeCCCCeEEEEecCCCCC--cceEEeec
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQ-GDVKAGLAISDRNSSFVHIYDARADSN--EPLISKKV 83 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s-~~~~~~~l~s~~~d~~I~iwd~~~~~~--~~i~~~~~ 83 (513)
+++|+||+.||++++||.. |+.... +.+|.+.+..+.|. ++.....+++++.|.++++|.++.+.. +.+....+
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~~~--~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G 191 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSIKT--IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRG 191 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceEEE--EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcc
Confidence 6899999999999999995 344444 44888888877765 333334799999999999998873332 22233349
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC-CCcc----------eeeeecCCccccccccCCcceEEEEEcCC
Q 010302 84 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF-PESE----------VSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
|...|-++...++|..++|||.|.+|+||+..+... +.+. ..-....+.++..+.+|..+|.++.|++
T Consensus 192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d- 270 (423)
T KOG0313|consen 192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD- 270 (423)
T ss_pred cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-
Confidence 999999999999999999999999999998322111 0000 0011224567778899999999999988
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
...+.++|.|++|+.||+.++++..++.. +....++.+.+..+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~-------------------------------------~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTT-------------------------------------NKSLNCISYSPLSK 313 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeec-------------------------------------CcceeEeecccccc
Confidence 66788999999999999999998776643 23456888999999
Q ss_pred EEEEccccc-eEEEEcccCc--EE-EEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeec
Q 010302 233 FLIYATLLG-IKIVNLHTNK--VS-RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFK 308 (513)
Q Consensus 233 ~li~~s~~g-i~v~d~~t~~--~v-~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~ 308 (513)
+|++++.+. |++||..++. ++ ..+-+|. ......+|++.++.+|+||+-
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~---------------------------nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK---------------------------NWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred eeeecCCCCceeecCCCCCCCceeEEeeecch---------------------------hhhhheecCCCCceEEEEEec
Confidence 999997765 8999998763 11 1121222 114567899999999999999
Q ss_pred CceEEEEecCCCC
Q 010302 309 RHRIYLFSRREPE 321 (513)
Q Consensus 309 ~~~i~i~~~~~~~ 321 (513)
|+.+.+|.-|++.
T Consensus 367 D~t~klWDvRS~k 379 (423)
T KOG0313|consen 367 DNTVKLWDVRSTK 379 (423)
T ss_pred CCeEEEEEeccCC
Confidence 9999999988754
No 84
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.9e-22 Score=171.85 Aligned_cols=203 Identities=19% Similarity=0.212 Sum_probs=172.2
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
+.+.|...+|+|+.|+.|.+||+++|+..+.+. +|.+.++.++|..++. +++||+.|.++++||.+..+.+|++.+
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r--gH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR--GHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecc--cccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchh
Confidence 456788899999999999999999999888766 8999999999998887 999999999999999997788999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
......|.++.. .+..++.||.||+++.||++.+++ ..... ..+|++++||+|++..+.++.
T Consensus 142 dea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l--------------~sDy~--g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 142 DEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTL--------------SSDYF--GHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred hhhcCceeEEEe--cccEEEeeccCCcEEEEEeeccee--------------ehhhc--CCcceeEEecCCCCEEEEeec
Confidence 988899999988 456799999999999999987542 33333 347999999999999999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
|+++|+-|-.||++++.+.+|... .|. ...++..+...++.++.+|
T Consensus 204 ~stlrLlDk~tGklL~sYkGhkn~----------eyk------------------------ldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 204 DSTLRLLDKETGKLLKSYKGHKNM----------EYK------------------------LDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred cceeeecccchhHHHHHhcccccc----------eee------------------------eeeeecccceeEEeccCCc
Confidence 999999999999999998876532 111 1345777778888899887
Q ss_pred -eEEEEcccCcEEEEeCCCC
Q 010302 242 -IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 242 -i~v~d~~t~~~v~~~g~~~ 260 (513)
+.+||+.....+..+..+.
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred eEEEEEeccceeeeeeccCC
Confidence 8999999988887776544
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=2.1e-21 Score=201.83 Aligned_cols=258 Identities=16% Similarity=0.164 Sum_probs=196.3
Q ss_pred CeEecCCCEEEEEe--CCCcEEEEEccCCc----------eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEE
Q 010302 1 MQVSVDGLLCCSIS--NDKSVKIYDVVNYD----------MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIY 68 (513)
Q Consensus 1 v~~s~dg~~las~s--~D~~v~iwd~~~~~----------~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw 68 (513)
|+.+|||..+|||+ .|+.++||+...-- ......+..|.+.+.++.|++++. ++++|++|+.|.||
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLASGSDDRLVMIW 96 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEeeccCcceEEEe
Confidence 46789999999999 89999999875210 111223446889999999999999 99999999999999
Q ss_pred ecCC----------------CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCc
Q 010302 69 DARA----------------DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 132 (513)
Q Consensus 69 d~~~----------------~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (513)
+... .+.+.+..+.+|...|..++|+|++.+|+|++.|++|.||+..++ +
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--------------~ 162 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--------------E 162 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc--------------e
Confidence 8751 123467788899999999999999999999999999999999884 4
Q ss_pred cccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee
Q 010302 133 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 212 (513)
Q Consensus 133 ~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~ 212 (513)
.+..+.+|.+.|-.+.|.|-|++||+-+.|++|+||+..+-.+.+.+.++.+. .
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~------~-------------------- 216 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE------S-------------------- 216 (942)
T ss_pred eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh------C--------------------
Confidence 57889999999999999999999999999999999998877777777653321 0
Q ss_pred eccccCCCCCCceEEcCCCCEEEEcccc-----ceEEEEcccCcEEEEeCCCCccchhheec--cccCCcCCcceeeeec
Q 010302 213 EIEKTETAPPSNAIFDESSNFLIYATLL-----GIKIVNLHTNKVSRILGKVENNDRFLRIA--LYQGDRSSKKVRKIPA 285 (513)
Q Consensus 213 e~~~~~~~~~~~i~fd~~g~~li~~s~~-----gi~v~d~~t~~~v~~~g~~~~~~r~~~~~--~~~~~~~~~~~~~~~~ 285 (513)
.......-+.|+|+|++|+++... .+.|++-.+-++-..+-+|....+++.+. +|...+. ++..+
T Consensus 217 ----~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-ng~~~--- 288 (942)
T KOG0973|consen 217 ----PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-NGTST--- 288 (942)
T ss_pred ----CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-cCCcc---
Confidence 001122346799999999987432 38888888877655554455466666553 4543222 11111
Q ss_pred cccccccCCCCCCC-C-eEEEeeecCceEEEEecCC
Q 010302 286 AAANANESKEPFSD-P-TLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 286 ~~~~~~~~~~~~~d-~-~l~~s~~~~~~i~i~~~~~ 319 (513)
.++ + +++|+|+.|+.|=||+-..
T Consensus 289 -----------~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 289 -----------QPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred -----------CCCcceEEEEEecCCccEEEEecCC
Confidence 011 1 5899999999999998654
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=9.4e-23 Score=194.34 Aligned_cols=249 Identities=17% Similarity=0.205 Sum_probs=185.2
Q ss_pred EEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEE
Q 010302 32 MIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIE 110 (513)
Q Consensus 32 ~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~ 110 (513)
++.+.+|...+.++.|.| .++ +++|++.|+.|+||++. ..+.+++++.+|..+|.+++|+++|..|+|+|.|++++
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy-~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVY-DDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred eeeccCCccccchhhhccceee--EEEecCCCceEEEEEEe-cCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 345678999999999998 555 89999999999999997 35899999999999999999999999999999999999
Q ss_pred EecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHH
Q 010302 111 YWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL 189 (513)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~ 189 (513)
+||++++++ +..+. ....+.|+.|+||+ +.+++|+.|+.|+.||+++++.++.++.|++.+..+
T Consensus 284 lwDtETG~~--------------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 284 LWDTETGQV--------------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred eeccccceE--------------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence 999998543 44333 23458899999999 788899999999999999999999999998887777
Q ss_pred hcCCCCccccccccccceeeeeeeccc-------cCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCc
Q 010302 190 QRSDAPLYRLEAIDFGRRMAVEKEIEK-------TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVEN 261 (513)
Q Consensus 190 ~~~~~~~~~l~~~~~~~r~~~e~e~~~-------~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~ 261 (513)
.+-+..-..+.+.|.+.-...|..+.. .......++..+|++++++.-+++. |-++.+. .
T Consensus 349 ~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~-----------~- 416 (503)
T KOG0282|consen 349 TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV-----------P- 416 (503)
T ss_pred EEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecc-----------c-
Confidence 766665555555555544444433321 1222334566777777777766553 3333321 1
Q ss_pred cchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 262 NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 262 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
..|...--.|.|+........+++ .+|+..+|||..++++|+|.=++..
T Consensus 417 ~~r~nkkK~feGh~vaGys~~v~f-----------SpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGYSCQVDF-----------SPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred ccccCHhhhhcceeccCceeeEEE-----------cCCCCeEEeecCCccEEEeechhhh
Confidence 222223334555555555555555 4999999999999999999866543
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=187.75 Aligned_cols=244 Identities=15% Similarity=0.105 Sum_probs=174.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc---------------------------eeEEEE-------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD---------------------------MMLMIR------------------- 34 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~---------------------------~~~~~~------------------- 34 (513)
+++.|.|-+|+|||.|.+|+.||+...+ .+..+.
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence 4678999999999999999999986422 111100
Q ss_pred -----------cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee-----cCCCCeEEEEEcCCCC
Q 010302 35 -----------LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-----VHMGPVKVMRYNPVFD 98 (513)
Q Consensus 35 -----------l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-----~h~~~V~~l~~sp~~~ 98 (513)
..+|...+.+.+|+|.... .+++++.|+++++||+.. ..+....++ +..-++++++|+|+++
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~-~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~ 330 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNN-TKSQLQVIKTKPAGGKRVPVTSCAWNRDGK 330 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCC-chhheeEEeeccCCCcccCceeeecCCCcc
Confidence 1234455677788888775 677889999999999962 223333333 4556789999999999
Q ss_pred EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eE
Q 010302 99 TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT--TVSAIEVSPDGKQFSITSPDRRIRVFWFRTG-KL 175 (513)
Q Consensus 99 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg-~~ 175 (513)
+|+.|..||.|.+|+...... ....+.-..|.. .|+||+||+||++|++-+.|+++++||++.- ++
T Consensus 331 ~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred hhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 999999999999999765332 122333345766 7999999999999999999999999999874 33
Q ss_pred EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc------c-eEEEEcc
Q 010302 176 RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL------G-IKIVNLH 248 (513)
Q Consensus 176 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~------g-i~v~d~~ 248 (513)
+.+..+ .....+.+.++|+|+.++|++|+.. | +.++|..
T Consensus 400 L~~~tg----------------------------------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 400 LNVRTG----------------------------------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred hhhhcC----------------------------------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 333221 0112355789999999999998653 3 8888988
Q ss_pred cCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 249 TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 249 t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+-+.++.+.-.. +......|+++=..||++.++ |.+|++....
T Consensus 446 t~d~v~ki~i~~---------------------------aSvv~~~WhpkLNQi~~gsgd-G~~~vyYdp~ 488 (641)
T KOG0772|consen 446 TLDTVYKIDIST---------------------------ASVVRCLWHPKLNQIFAGSGD-GTAHVYYDPN 488 (641)
T ss_pred ceeeEEEecCCC---------------------------ceEEEEeecchhhheeeecCC-CceEEEECcc
Confidence 888888875432 112233566666666665554 8999987664
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=5.3e-21 Score=180.04 Aligned_cols=234 Identities=16% Similarity=0.231 Sum_probs=189.2
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
|....+++|+.|.++.++|..+.+.+..+. +|...|+++.++++.. .+++++.|..|+||... ..........|
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s~q~l~~~~--Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~--~~s~~~~~~~h 302 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPSNQILATLK--GHTKKITSVKFHKDLD--TVITASADEIIRVWSVP--LSSEPTSSRPH 302 (506)
T ss_pred CCCCcceecCCCCceEEEecchhhhhhhcc--CcceEEEEEEeccchh--heeecCCcceEEeeccc--cccCccccccc
Confidence 444789999999999999999888776654 8999999999999988 88999999999999986 44455666799
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEEEEcCCCCEEEEEeCC
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~l~s~s~D 162 (513)
..+|+.+..+|.|+||++++.|++..+.|++++. .+..... ..-.+++.+|+|||..|.+|..|
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~--------------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS--------------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccceeeeeccCCcEEEEecCCceEEEEEccCCc--------------EEEEEeeccccceeEEeeEcCCceEEeccCCC
Confidence 9999999999999999999999999888887743 2222221 22348999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-
Q 010302 163 RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG- 241 (513)
Q Consensus 163 ~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g- 241 (513)
+.++|||+.++..+..|.+|. .++..+.|+++|-||+.++.++
T Consensus 369 ~~vkiwdlks~~~~a~Fpght------------------------------------~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT------------------------------------GPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred ceEEEEEcCCccccccCCCCC------------------------------------CceeEEEeccCceEEEEEecCCe
Confidence 999999999988777776644 3456889999999999999998
Q ss_pred eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 242 IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 242 i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
|++||+..-+.++++.-++ ++.+.++++. ..+..+..++++-+||++-+....
T Consensus 413 V~lwDLRKl~n~kt~~l~~----------------~~~v~s~~fD-----------~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQLDE----------------KKEVNSLSFD-----------QSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred EEEEEehhhcccceeeccc----------------cccceeEEEc-----------CCCCeEEeecceeEEEEEeccccc
Confidence 9999998877776664443 1234444443 556778888999999999766543
No 89
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=1.2e-20 Score=194.32 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=149.5
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCce-e-----EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDM-M-----LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD 73 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~-~-----~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~ 73 (513)
++|+|+ +++||||+.|++|+|||+.++.. . ....+..|...+..+.|+|++.. ++++++.|++|++||++
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~-- 156 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIE-- 156 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECC--
Confidence 579996 89999999999999999986431 1 12235578899999999998752 66788999999999998
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceE-----EEE
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS-----AIE 148 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~v~ 148 (513)
+++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++ +.+..+.+|.+.+. ...
T Consensus 157 tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg--------------~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 157 NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ--------------EIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC--------------cEEEEEecccCCceeEEEEeee
Confidence 666666665 6678999999999999999999999999999883 44566777876543 334
Q ss_pred EcCCCCEEEEEeCCC----cEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCC
Q 010302 149 VSPDGKQFSITSPDR----RIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 149 ~spdg~~l~s~s~D~----~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
|++++.+|++++.|+ +|+|||+++ ++.+..+.... .....
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-----------------------------------~~~~L 266 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-----------------------------------ASAPL 266 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-----------------------------------Cccce
Confidence 568999999888664 799999985 55554432100 00111
Q ss_pred ceEEcC-CCCEEEEccccc-eEEEEcccCcEE
Q 010302 224 NAIFDE-SSNFLIYATLLG-IKIVNLHTNKVS 253 (513)
Q Consensus 224 ~i~fd~-~g~~li~~s~~g-i~v~d~~t~~~v 253 (513)
...||+ +|.++++|+.++ |++|++..+.+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~ 298 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIR 298 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcEE
Confidence 223444 588888886665 999999877543
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=5.7e-22 Score=174.08 Aligned_cols=264 Identities=15% Similarity=0.115 Sum_probs=201.2
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
|+|-+|++++.|+.-.+-+-.+++.+-.+. +|.+.++......+.. .+++++.|-+.++||.- ++..++++ .|
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfe--ghkgavw~~~l~~na~--~aasaaadftakvw~a~--tgdelhsf-~h 99 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFE--GHKGAVWSATLNKNAT--RAASAAADFTAKVWDAV--TGDELHSF-EH 99 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeee--ccCcceeeeecCchhh--hhhhhcccchhhhhhhh--hhhhhhhh-hh
Confidence 699999999999999999999999988876 8999998887766555 78899999999999987 88888888 48
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCc
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~ 164 (513)
..-|.+++|+.|.++|++|+.+..+||+|++..+ .+..++.+|.+.|..+.|....+.+++++.|++
T Consensus 100 khivk~~af~~ds~~lltgg~ekllrvfdln~p~-------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 100 KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hheeeeEEecccchhhhccchHHHhhhhhccCCC-------------CCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 8899999999999999999999999999997743 456788899999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee----eccc--cCCCCCCceEEcCCCCEEEEcc
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK----EIEK--TETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~----e~~~--~~~~~~~~i~fd~~g~~li~~s 238 (513)
||+||.++|+.++++.-... ++++..+.+.-+ -...+|..+.... ++.+ +....+.++..+|+..++++|.
T Consensus 167 VRLWD~rTgt~v~sL~~~s~-VtSlEvs~dG~i--lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEFNSP-VTSLEVSQDGRI--LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG 243 (334)
T ss_pred eEEEEeccCcEEEEEecCCC-CcceeeccCCCE--EEEecCceeEEeccccccceeeccCccccccccccCCCceEEecC
Confidence 99999999999998864321 222222222111 1111222222211 1111 2234556778888888888876
Q ss_pred cc-ceEEEEcccCcEEEEe-CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 239 LL-GIKIVNLHTNKVSRIL-GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 239 ~~-gi~v~d~~t~~~v~~~-g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
.+ .++.+|..||+-+..+ .+|.+.+-.++++ ||+-+.|+|++|+.|+||.
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------------PdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------------PDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------------CCCceeeccCCCceEEEEE
Confidence 55 4888999998877775 3333344433333 8999999999999999997
Q ss_pred cCC
Q 010302 317 RRE 319 (513)
Q Consensus 317 ~~~ 319 (513)
...
T Consensus 296 t~~ 298 (334)
T KOG0278|consen 296 TTP 298 (334)
T ss_pred ecC
Confidence 553
No 91
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=7.3e-21 Score=189.81 Aligned_cols=289 Identities=12% Similarity=0.105 Sum_probs=214.0
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--CcceEE
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS--NEPLIS 80 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~--~~~i~~ 80 (513)
+-|+.++||.++..+.+|+|++.+..+. -+.+|...+.++.....+. +++||+.|+++++|.++... ..++..
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~--llat~sKD~svilWr~~~~~~~~~~~a~ 406 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGD--LLATGSKDKSVILWRLNNNCSKSLCVAQ 406 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCc--EEEEecCCceEEEEEecCCcchhhhhhh
Confidence 3477799999999999999999876664 3458999898888444444 99999999999999884212 234445
Q ss_pred eecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
..+|...|.+++++..+ ..|+++|.|+++++|++...+.-...+. -++.++...|...|++++++|+.+.+|||
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~-----~~~~~t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV-----LTCRYTERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccce-----ehhhHHHHhhcccccceEecCCCceEEec
Confidence 56999999999998754 5789999999999999866221111000 11122345699999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
|.|++.+||++..+++..++.+|.. .+.++.|++..+.++++|.
T Consensus 482 SqDktaKiW~le~~~l~~vLsGH~R------------------------------------Gvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLLGVLSGHTR------------------------------------GVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred ccccceeeecccCceEEEEeeCCcc------------------------------------ceEEEEeccccceeEeccC
Confidence 9999999999999999999988652 3568899999999999886
Q ss_pred c-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 240 L-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 240 ~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+ .||||.+.+..|++++.+|++. +++.++ .+++.-+.|++.||-+.+|+-+
T Consensus 526 D~TvKIW~is~fSClkT~eGH~~a--Vlra~F--------------------------~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGHTSA--VLRASF--------------------------IRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred CceEEEEEeccceeeeeecCccce--eEeeee--------------------------eeCCcEEEeccCCCcEEEEecc
Confidence 6 5999999999999999888732 222222 2667779999999999999977
Q ss_pred CCCCCcccCCCcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCeEEEEEeCCCCChHHH
Q 010302 319 EPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTV 382 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~l~~~~~P~~~ 382 (513)
+.+=.. .-|.+|.+- |.-...+..-.|.|--|+=+|.+|.|..-...
T Consensus 578 t~eC~~----tlD~H~Drv-------------WaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~ 624 (775)
T KOG0319|consen 578 TNECEM----TLDAHNDRV-------------WALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQ 624 (775)
T ss_pred chhhhh----hhhhcccee-------------EEEeecCccceeEecCCCeEEEEeecCcHHHH
Confidence 543221 234454442 11112223336677778888889988655433
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4e-20 Score=164.15 Aligned_cols=264 Identities=16% Similarity=0.164 Sum_probs=197.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|.++.+|.+|.||+.|.+..+|-..+|+.+-... +|.+.|+++....++. .+++|+.|.++++||+. +++++..
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~--GHtGavW~~Did~~s~--~liTGSAD~t~kLWDv~--tGk~la~ 89 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD--GHTGAVWCCDIDWDSK--HLITGSADQTAKLWDVE--TGKQLAT 89 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeec--CCCceEEEEEecCCcc--eeeeccccceeEEEEcC--CCcEEEE
Confidence 4688999999999999999999998888877765 9999999999988888 99999999999999998 9999999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcC-----CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADD-----KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
++ -..+|..+.|+++|++++.+.. .+.|.++|++.... +....++...+..+...++.+-|+|-+++
T Consensus 90 ~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~-------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 90 WK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS-------DIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred ee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh-------hhcccCceEEecCCccceeeeeecccCCE
Confidence 86 4578999999999998876654 35688998875221 11234567777888899999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEE-EecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRR-VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
|++|..||.|.+||+++|+.+. ..+.|. ..++.+.++++..+.
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~------------------------------------~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHS------------------------------------SKINDLQFSRDRTYF 205 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhc------------------------------------cccccccccCCcceE
Confidence 9999999999999999986543 223322 244567788899999
Q ss_pred EEccccc-eEEEEcccCcEEEEeCCCCccchhheec------cccCCcCCcceeeeecccc-------------------
Q 010302 235 IYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIA------LYQGDRSSKKVRKIPAAAA------------------- 288 (513)
Q Consensus 235 i~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~------~~~~~~~~~~~~~~~~~~~------------------- 288 (513)
+.++.+. -++||..+-++++++.-+. .+....++ ++.|-.....|.+-..-+.
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kty~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk 284 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKTYTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK 284 (327)
T ss_pred EecccCccceeeeccceeeEEEeeecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence 9998775 8999999999999885433 22211111 1122222222222111111
Q ss_pred --c--cccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 289 --N--ANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 289 --~--~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
- .+.+.- .||+...|||++|+.+++-.
T Consensus 285 GHFGPINsvAf-hPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 285 GHFGPINSVAF-HPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ccccCcceeEE-CCCCcccccCCCCceEEEEE
Confidence 0 222222 49999999999999887764
No 93
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=8.7e-21 Score=175.90 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=173.4
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEE--EEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC-------------
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLM--IRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA------------- 72 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~--~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~------------- 72 (513)
..++++|.|.++++|.++.++.... ....+|...|.+++..+++. .++|++.|.+|+||+...
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 4699999999999999987654322 22348999999999999888 999999999999999311
Q ss_pred ----------CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 73 ----------DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 73 ----------~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
+...++-++.+|+.+|.++.|++ ...++|+|.|.+|+.||+.++.+ ...+. .+.
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~--------------~~~~~-~~k 301 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL--------------KSTLT-TNK 301 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc--------------eeeee-cCc
Confidence 12456778889999999999988 67889999999999999988543 33333 334
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK---LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
..+++..+|..++|++||.|..||+||.+++. ..++|-+|...+..+.+
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw---------------------------- 353 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW---------------------------- 353 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec----------------------------
Confidence 68999999999999999999999999999853 34567777666555544
Q ss_pred CCCCceEEcCCCC-EEEEccccc-eEEEEcccCc-EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCC
Q 010302 220 APPSNAIFDESSN-FLIYATLLG-IKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEP 296 (513)
Q Consensus 220 ~~~~~i~fd~~g~-~li~~s~~g-i~v~d~~t~~-~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (513)
+|... .+++++.++ +++||..+-+ .+..+-+|+ .++ ..+.|
T Consensus 354 --------sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~--DKv-------------------------l~vdW- 397 (423)
T KOG0313|consen 354 --------SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN--DKV-------------------------LSVDW- 397 (423)
T ss_pred --------CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC--ceE-------------------------EEEec-
Confidence 44444 455667765 8999998766 666664442 122 22344
Q ss_pred CCCCeEEEeeecCceEEEEec
Q 010302 297 FSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 297 ~~d~~l~~s~~~~~~i~i~~~ 317 (513)
.++.+++||+.|+.++||.-
T Consensus 398 -~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 398 -NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred -cCCceEEeccCcceEEEecc
Confidence 57789999999999999953
No 94
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=1.6e-20 Score=179.82 Aligned_cols=224 Identities=19% Similarity=0.234 Sum_probs=177.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.|+|++++|++++.|+.|++||+.+++....+. .+...+..+.|++++. ++++++.++.+.+||+. +.+....
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~--~~~~~~~ 130 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVE--TGKCLTT 130 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe--ccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECC--CcEEEEE
Confidence 4688999999999999999999999876655544 6677899999999865 88888889999999997 6788888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+..|...+.+++|+|++.++++++.|+.+++||+++. +.+..+..|...+.+++|+|+++.+++++
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--------------KCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--------------ccceeEecCccccceEEECCCcCEEEEec
Confidence 8889999999999999999999988999999999763 34555667888999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeee--------eeccccCCCCCCceEEcCCCC
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE--------KEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e--------~e~~~~~~~~~~~i~fd~~g~ 232 (513)
.|+.|++||+++++.+..+..+...+..+.+.+...+.+.....+. +.+. ..+. .....+..+.|+++++
T Consensus 197 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGK 274 (289)
T ss_pred CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEcc-ccCCcEEEEEECCCCC
Confidence 9999999999999998888777767777777775333333221221 1111 1111 2233567889999999
Q ss_pred EEEEccccc-eEEEE
Q 010302 233 FLIYATLLG-IKIVN 246 (513)
Q Consensus 233 ~li~~s~~g-i~v~d 246 (513)
+|+.++.++ |++|+
T Consensus 275 ~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 RLASGSADGTIRIWD 289 (289)
T ss_pred EEEEecCCCeEEecC
Confidence 999988775 88885
No 95
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=169.79 Aligned_cols=246 Identities=15% Similarity=0.188 Sum_probs=174.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.||+.|.+||+|+.||.|.|||+.|+...+++ .+|..++++++||++++ .+++++.|..|.+||+. .+.+++.
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l--saH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~--~gs~l~r 102 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARML--SAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLL--KGSPLKR 102 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhh--hccccceeEEEecCCCC--EeeeecCCceeEEEecc--CCCceeE
Confidence 469999999999999999999999998765554 48899999999999999 99999999999999998 6667766
Q ss_pred eecCCCCeEEEEEcC-----------------------------------------------CCCEEEEEcCCCcEEEec
Q 010302 81 KKVHMGPVKVMRYNP-----------------------------------------------VFDTVISADDKGIIEYWS 113 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp-----------------------------------------------~~~~l~s~s~dg~i~iwd 113 (513)
+. ..++|+.+.|+| .|+++++|...|.+.++|
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 53 334444444444 444555555555555555
Q ss_pred CCCCCCCCcceeeeecCCccccccccCC-cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcC
Q 010302 114 PHTLQFPESEVSFRLKSDTNLFEILKSK-TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 192 (513)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 192 (513)
..+. +++..+.-.. ..|.++.|+..|+.|+..+.|..||.|+.+.--... -++.....
T Consensus 182 a~t~--------------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~-r~~e~e~~------ 240 (405)
T KOG1273|consen 182 AETL--------------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG-RDGEVEPE------ 240 (405)
T ss_pred cchh--------------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC-ccCCcChh------
Confidence 5443 3343333322 568889999999999999999999999975311000 00000110
Q ss_pred CCCccccccccccceeeeeeeccc-cCCCCCCceEEcCCCCEEEEcccc--ceEEEEcccCcEEEEeCCCCccchhheec
Q 010302 193 DAPLYRLEAIDFGRRMAVEKEIEK-TETAPPSNAIFDESSNFLIYATLL--GIKIVNLHTNKVSRILGKVENNDRFLRIA 269 (513)
Q Consensus 193 ~~~~~~l~~~~~~~r~~~e~e~~~-~~~~~~~~i~fd~~g~~li~~s~~--gi~v~d~~t~~~v~~~g~~~~~~r~~~~~ 269 (513)
.+++. -....+..++|+.+|.|++.++.. .+.||.-..|.+++++.+.++
T Consensus 241 -------------------~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-------- 293 (405)
T KOG1273|consen 241 -------------------HKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-------- 293 (405)
T ss_pred -------------------HHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch--------
Confidence 11111 112356789999999999998754 499999999999999976552
Q ss_pred cccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 270 LYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
.....+.|++-.|++..- ..+.+|||+-..++
T Consensus 294 ------------------E~l~DV~whp~rp~i~si--~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 294 ------------------EELLDVNWHPVRPIIASI--ASGVVYIWAVVQVE 325 (405)
T ss_pred ------------------hheeecccccceeeeeec--cCCceEEEEeeccc
Confidence 114556677777776655 78899999866544
No 96
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=193.48 Aligned_cols=260 Identities=17% Similarity=0.159 Sum_probs=202.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
+.++++++.|.+|++||..++..+.. .+.+|.+.+..+.+...+. ++++|+.|.++++||.. ++++.+.+.+|..
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~--sg~C~~~l~gh~s 292 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS--TGECTHSLQGHTS 292 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEe-eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC--CCcEEEEecCCCc
Confidence 56788999999999999998776554 3569999999999986444 99999999999999987 9999999999999
Q ss_pred CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 010302 87 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIR 166 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~ 166 (513)
.|.++.. ...++++|+.|.+|++|++.+ +..+..+.+|.++|.++..+ +.++++|+.|++|+
T Consensus 293 tv~~~~~--~~~~~~sgs~D~tVkVW~v~n--------------~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 293 SVRCLTI--DPFLLVSGSRDNTVKVWDVTN--------------GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred eEEEEEc--cCceEeeccCCceEEEEeccC--------------cceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence 9999876 556788999999999999987 45577787899999999995 89999999999999
Q ss_pred EEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEE
Q 010302 167 VFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIV 245 (513)
Q Consensus 167 iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~ 245 (513)
+||+.++++++++.+|...+ .++.++.. +.++.++.++ |++|
T Consensus 355 VW~~~~~~cl~sl~gH~~~V------------------------------------~sl~~~~~-~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRV------------------------------------YSLIVDSE-NRLLSGSLDTTIKVW 397 (537)
T ss_pred EEEhhhceeeeeecCCcceE------------------------------------EEEEecCc-ceEEeeeeccceEee
Confidence 99999999999998876442 24445554 7888888876 9999
Q ss_pred EcccC-cEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCc
Q 010302 246 NLHTN-KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPE 324 (513)
Q Consensus 246 d~~t~-~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~ 324 (513)
|+.+. +++.++.+|.+-+ ..+ .....++.|+..|+.|++|...+.+-.+
T Consensus 398 dl~~~~~c~~tl~~h~~~v--~~l----------------------------~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQGHTSLV--SSL----------------------------LLRDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred cCCchhhhhhhhcCCcccc--ccc----------------------------ccccceeEeccccccEEEeecccCceee
Confidence 99999 9999998776211 111 2455678899999999999666544222
Q ss_pred ccCCCcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCeEEEEE
Q 010302 325 DATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMK 372 (513)
Q Consensus 325 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~ 372 (513)
..... ....+.++. -....++.....|.+.+.
T Consensus 448 -------~~~~~-~~~~v~~l~--------~~~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 448 -------TLEGR-HVGGVSALA--------LGKEEILCSSDDGSVKLW 479 (537)
T ss_pred -------eeccC-CcccEEEee--------cCcceEEEEecCCeeEEE
Confidence 11111 111111111 114667777888888777
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=9.8e-21 Score=179.66 Aligned_cols=250 Identities=11% Similarity=0.132 Sum_probs=178.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCc--------eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC---
Q 010302 7 GLLCCSISNDKSVKIYDVVNYD--------MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN--- 75 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~--------~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~--- 75 (513)
-..+|+.+..+.|.|||..+.. +...+.+.+|......++|++.... .+++++.|++|++||++....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~~~ 215 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKEDK 215 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCCCcEEEEeccccccCCc
Confidence 4567888889999999987532 2233456678877778889887654 889999999999999974332
Q ss_pred --cceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-
Q 010302 76 --EPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP- 151 (513)
Q Consensus 76 --~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp- 151 (513)
.+...+.+|...|..++|++ +..+|++++.|+.+.|||+++.+ .++.....+|.+.|+|++|+|
T Consensus 216 ~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------~~~~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 216 VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------SKPSHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------CCCcccccccCCceeEEEeCCC
Confidence 34456679999999999999 56788999999999999998621 345666778999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 152 DGKQFSITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 152 dg~~l~s~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++..||+||.|++|.+||+|+. +.+.++.+|...+ ..+.|+|.
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev------------------------------------~~V~WSPh 327 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV------------------------------------FQVEWSPH 327 (422)
T ss_pred CCceEEeccCCCcEEEeechhcccCceeccCCCcce------------------------------------EEEEeCCC
Confidence 5568899999999999999984 4566666554333 35567766
Q ss_pred CCEEE-Ecc-ccceEEEEcccCcEEEE-eCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeee
Q 010302 231 SNFLI-YAT-LLGIKIVNLHTNKVSRI-LGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF 307 (513)
Q Consensus 231 g~~li-~~s-~~gi~v~d~~t~~~v~~-~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~ 307 (513)
..-++ ++. +..+.|||+..=.--+. -.+.++.. .+ +|. -..|.+..+..+|++.+|-++||..
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp---El-lF~----------HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP---EL-LFI----------HGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCc---ce-eEE----------ecCcccccccccCCCCCCeEEEEec
Confidence 65444 433 34599999853110000 00011111 11 111 1112223677789999999999999
Q ss_pred cCceEEEEecCC
Q 010302 308 KRHRIYLFSRRE 319 (513)
Q Consensus 308 ~~~~i~i~~~~~ 319 (513)
+|+-+.||...+
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999998763
No 98
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=2.6e-20 Score=172.01 Aligned_cols=203 Identities=15% Similarity=0.185 Sum_probs=164.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.||.||.+||||..+|.|+||...++.....+. ..-..+.|+.|+|... ++++|+.||.+.+|.+. +....+.
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip--~~~~~kv 185 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIP--SQALCKV 185 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEeccccc--EEEeecCCCcEEEEECC--CcceeeE
Confidence 4699999999999999999999999988776654 4456799999999777 99999999999999997 6577788
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCC----------c----------------------------
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE----------S---------------------------- 122 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~----------~---------------------------- 122 (513)
+.+|..++++=.|.|+|+.++++..||+|++|++.+++..- .
T Consensus 186 ~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 186 MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 88999999999999999999999999999999987653210 0
Q ss_pred --------------------------------------------ceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 123 --------------------------------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 123 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
+..|++.. ..++....|...|..+.|-+ ..+|++
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c~he~~V~~l~w~~-t~~l~t 343 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHICEHEDGVTKLKWLN-TDYLLT 343 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-chhheeccCCCceEEEEEcC-cchhee
Confidence 01122211 12334445778899999988 778899
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
++.+|.|++||.++|+++.++.+|...+ -.++++|+++++++.+
T Consensus 344 ~c~~g~v~~wDaRtG~l~~~y~GH~~~I------------------------------------l~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKFTYTGHQMGI------------------------------------LDFALSPQKRLVVTVS 387 (399)
T ss_pred eccCceEEeeeccccceEEEEecCchhe------------------------------------eEEEEcCCCcEEEEec
Confidence 9999999999999999999998876443 2457888999999998
Q ss_pred ccc-eEEEEc
Q 010302 239 LLG-IKIVNL 247 (513)
Q Consensus 239 ~~g-i~v~d~ 247 (513)
.++ .+|++.
T Consensus 388 ~D~~a~VF~v 397 (399)
T KOG0296|consen 388 DDNTALVFEV 397 (399)
T ss_pred CCCeEEEEec
Confidence 876 567654
No 99
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=184.44 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=146.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|+|++.+++||++|..|++|+..+.+++.+ +.+|-.-|..+.|++.-. .++|+|.|.+|+||+++ +.+++..
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclft--L~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwq--sr~~iav 130 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT--LLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQ--SRKCIAV 130 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhh--hccccceeEEeeccCCCc--eEEEccCCCeEEEEecc--CCceEEE
Confidence 57999999999999999999999987776555 558889999999998877 99999999999999998 9999999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC----CC--------------------ccee-----------
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF----PE--------------------SEVS----------- 125 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~----~~--------------------~~~~----------- 125 (513)
+.+|...|.|.+|+|..++++|+|-|.+||+||+.-... |. .+++
T Consensus 131 ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN 210 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN 210 (1202)
T ss_pred EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence 999999999999999999999999999999999742211 11 0011
Q ss_pred ----------------------eeecC--CccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 126 ----------------------FRLKS--DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 126 ----------------------~~~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
|.+.. .=.+-+..+|.+.|.++-|+|....+++.|.|++|||||+...+.++++.
T Consensus 211 waAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 211 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred eEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 22211 11234556799999999999999999999999999999999998888884
No 100
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=1.4e-20 Score=188.04 Aligned_cols=269 Identities=16% Similarity=0.199 Sum_probs=210.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+++|.|...++||+ .++++||+..+.++++++.. +-+.+..|.|... +++.|...|.+.+||+. +...+.+
T Consensus 379 l~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvpgd~--~Iv~G~k~Gel~vfdla--S~~l~Et 449 (888)
T KOG0306|consen 379 LCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVPGDR--YIVLGTKNGELQVFDLA--SASLVET 449 (888)
T ss_pred EEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecCCCc--eEEEeccCCceEEEEee--hhhhhhh
Confidence 46888888888765 56899999999999888762 3577778888887 89999999999999998 7888888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc-------ccccCCcceEEEEEcCCC
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF-------EILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~v~~spdg 153 (513)
++.|.+.|++++.+||+..+++||.|.+|++||..- ..+ ..++... ....-...|.|+.+||||
T Consensus 450 i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l--------~~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 450 IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL--------VVS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred hhccccceeeeeecCCCCceEEecCCcEEEEEeEEE--------Eec-cCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 899999999999999999999999999999998632 111 0011111 111234679999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccc----------ccccccceeeeeeeccccCCCCCC
Q 010302 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL----------EAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l----------~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
++||.+-.|.+++||-+.+-+..-.+-+|.-++.+|+.++++.+.+ .+.+||..- +-+- .....++
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~f-AHdDSvm 596 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFF-AHDDSVM 596 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhh-cccCcee
Confidence 9999999999999999999999999999999999999888754433 333444210 0000 1124567
Q ss_pred ceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeE
Q 010302 224 NAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTL 302 (513)
Q Consensus 224 ~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 302 (513)
++.|-|..++..+++.++ ||-||...=+.++.+.+|...++.+.++ +++..
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~----------------------------~~G~~ 648 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS----------------------------PNGSF 648 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc----------------------------CCCCe
Confidence 899999888777766554 9999999999999998877566654443 78889
Q ss_pred EEeeecCceEEEEecCC
Q 010302 303 LCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 303 ~~s~~~~~~i~i~~~~~ 319 (513)
+.|++.|..|++|.+..
T Consensus 649 vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEeccCCceeEeeeccC
Confidence 99999999999998775
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.6e-20 Score=175.65 Aligned_cols=250 Identities=14% Similarity=0.171 Sum_probs=174.4
Q ss_pred cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEec
Q 010302 35 LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWS 113 (513)
Q Consensus 35 l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd 113 (513)
+..|...|+.+.||++|+ +++|++.|.+..+|++... ..+..+++.+|..+|..+.||||.++|++|+.|..+.+||
T Consensus 220 l~~htdEVWfl~FS~nGk--yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGK--YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred HhhCCCcEEEEEEcCCCe--eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 446888999999999999 9999999999999997522 2345677889999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcC
Q 010302 114 PHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 192 (513)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 192 (513)
+.++.+ ...+. ++...+.+++|.|||..+++|+.|++|..||+. |..+..+++
T Consensus 298 v~tgd~--------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g----------- 351 (519)
T KOG0293|consen 298 VDTGDL--------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEG----------- 351 (519)
T ss_pred CCcchh--------------hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccc-----------
Confidence 988542 33332 245779999999999999999999999999975 333333322
Q ss_pred CCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc-cceEEEEcccCcEEEEeCCCCccc--------
Q 010302 193 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKVENND-------- 263 (513)
Q Consensus 193 ~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~-~gi~v~d~~t~~~v~~~g~~~~~~-------- 263 (513)
.....+..++..++|++++.... ..|++++..+.....++..+.+..
T Consensus 352 ------------------------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~ 407 (519)
T KOG0293|consen 352 ------------------------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDG 407 (519)
T ss_pred ------------------------cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCC
Confidence 01123456778889998887654 458888887765554443332111
Q ss_pred hhh------------------eeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCcc
Q 010302 264 RFL------------------RIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPED 325 (513)
Q Consensus 264 r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~ 325 (513)
++. .+.-|+|+-....++...+. ..|..+++||++|..||||+|.......-
T Consensus 408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg----------g~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG----------GGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC----------CCCcceEEecCCCceEEEEEccCCceeEe
Confidence 111 01122333333333333332 47788999999999999999998665554
Q ss_pred cCCC---cCccCCCCCcccccccc
Q 010302 326 ATKG---RDIFNEKPPPDELLAVS 346 (513)
Q Consensus 326 ~~~~---~~~~~~~p~~~~~~~~~ 346 (513)
+.++ -++..--|.-..+.+.+
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhcc
Confidence 5554 34444445444444444
No 102
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=9.4e-21 Score=166.96 Aligned_cols=238 Identities=13% Similarity=0.133 Sum_probs=171.4
Q ss_pred CeEec--CCCEEEEEe------CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 1 MQVSV--DGLLCCSIS------NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~--dg~~las~s------~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
+.||| ++++.++++ ..|++.|.++...+.+....--.-...+..++|++.... .+++++.||++++||+.
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~-~~~~a~GDGSLrl~d~~- 91 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN-QVIAASGDGSLRLFDLT- 91 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc-eEEEEecCceEEEeccC-
Confidence 46787 344433332 268899999975554444332223467889999987665 67777889999999974
Q ss_pred CCCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC
Q 010302 73 DSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP 151 (513)
Q Consensus 73 ~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 151 (513)
....+++.++.|...|.++.|++ .++.++++|-|++|++|+... +..+.++.+|...|...+|||
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--------------~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--------------PNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC--------------CcceEeecCCccEEEEEecCC
Confidence 45679999999999999999998 667788889999999998855 456888999999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 152 -DGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 152 -dg~~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
.++.++++|.|+++++||++. |+.+. +..|...+ .++-|+.
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Ei------------------------------------l~cdw~k 200 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEI------------------------------------LCCDWSK 200 (311)
T ss_pred CCCCeEEEccCCceEEEEEecCCCceeE-EEecccee------------------------------------Eeecccc
Confidence 567999999999999999986 44433 44333222 2344555
Q ss_pred CCCE-EEEccccc-eEEEEcccC-cEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEee
Q 010302 230 SSNF-LIYATLLG-IKIVNLHTN-KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCA 306 (513)
Q Consensus 230 ~g~~-li~~s~~g-i~v~d~~t~-~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~ 306 (513)
..+. |+++..++ |++||+..- ..+..+.+|+-.+|-++.+ +...-|+||+
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S---------------------------ph~~~lLaSa 253 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS---------------------------PHHASLLASA 253 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC---------------------------cchhhHhhhc
Confidence 5554 44555444 999999753 3344554444333433322 5666789999
Q ss_pred ecCceEEEEecC
Q 010302 307 FKRHRIYLFSRR 318 (513)
Q Consensus 307 ~~~~~i~i~~~~ 318 (513)
+=|=..+||...
T Consensus 254 sYDmT~riw~~~ 265 (311)
T KOG0277|consen 254 SYDMTVRIWDPE 265 (311)
T ss_pred cccceEEecccc
Confidence 999999999755
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.2e-21 Score=194.42 Aligned_cols=228 Identities=11% Similarity=0.168 Sum_probs=170.4
Q ss_pred CCCEEEEEeCCCcEEEEEccCC-ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNY-DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~-~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
+.++||||+..|.|.+||+... +......+..|...+..+.|++.... +++||+.|++|++||++ ..+...++.+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR--~~~S~~t~~~n 175 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLR--SKKSKSTFRSN 175 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeee--ccccccccccc
Confidence 4689999999999999999752 11122234578899999999876543 99999999999999999 66777777788
Q ss_pred CCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCC
Q 010302 85 MGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 163 (513)
Q Consensus 85 ~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~ 163 (513)
...|..++|+| .+..|+++...|.+++||++.. ..+...+..|.++|.|+.|+|++.+||||+.|+
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp-------------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP-------------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCc-------------hhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence 89999999999 6889999999999999999873 356778889999999999999999999999999
Q ss_pred cEEEEEcCCCeEE--EEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE-Ecccc
Q 010302 164 RIRVFWFRTGKLR--RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI-YATLL 240 (513)
Q Consensus 164 ~I~iwd~~tg~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li-~~s~~ 240 (513)
.|+|||+.+++.. .++. -..++..+.|=|..++.+ ++++.
T Consensus 243 ~vkiWd~t~~~~~~~~tIn-------------------------------------Tiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTIN-------------------------------------TIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred cEEEEeccCCCccceeEEe-------------------------------------ecceeeeeeeccCccchhhhhhcc
Confidence 9999999875432 2221 113445666776666544 34433
Q ss_pred ---ceEEEEcccCc-EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEE
Q 010302 241 ---GIKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIY 313 (513)
Q Consensus 241 ---gi~v~d~~t~~-~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~ 313 (513)
.|+|||+.--= ..+++..|. .......|...|+.++.++++|+.|+
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~---------------------------~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHT---------------------------DSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccceEEEEeeccccccceeeeccC---------------------------ccccceeccCCCceeeEeecCccHHH
Confidence 49999984211 112222222 11334456677888888888887775
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=5.4e-20 Score=173.27 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=177.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.++|+...+++++.|..|+||.......... ...|...|..+..+|.+. +++++++|++..+.|++ ++..+..
T Consensus 267 v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~--~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~--~g~~lt~ 340 (506)
T KOG0289|consen 267 VKFHKDLDTVITASADEIIRVWSVPLSSEPTS--SRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDIS--SGSQLTV 340 (506)
T ss_pred EEeccchhheeecCCcceEEeeccccccCccc--cccccccceeeeeccCCc--EEEEecCCceEEEEEcc--CCcEEEE
Confidence 35788999999999999999999976554333 347889999999999999 99999999999999998 7766665
Q ss_pred eec--CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 81 KKV--HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~~--h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
... ..-.+++.+|+|||..|.+|..|+.++|||+.. +..+..|.+|.++|..++|+-+|.+||+
T Consensus 341 vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks--------------~~~~a~Fpght~~vk~i~FsENGY~Lat 406 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS--------------QTNVAKFPGHTGPVKAISFSENGYWLAT 406 (506)
T ss_pred EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC--------------ccccccCCCCCCceeEEEeccCceEEEE
Confidence 543 234589999999999999999999999999966 5567889999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
++.|+.|++||++..+.++++.- .......++.||.+|.||+.++
T Consensus 407 ~add~~V~lwDLRKl~n~kt~~l-----------------------------------~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 407 AADDGSVKLWDLRKLKNFKTIQL-----------------------------------DEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EecCCeEEEEEehhhcccceeec-----------------------------------cccccceeEEEcCCCCeEEeec
Confidence 99999999999998877666531 1122456889999999998763
Q ss_pred c-cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 239 L-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 239 ~-~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
. ..|.+++-.+.+.-.+..-++. .| ...-.|...+..++++++.+..+.++.
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~----------sg----------------~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADH----------SG----------------LSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ceeEEEEEecccccceeeehhhhc----------cc----------------ccceeeecccceEEeeccchhheEEee
Confidence 2 2344444444433322211110 00 111112235667788888888777764
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=177.47 Aligned_cols=202 Identities=15% Similarity=0.184 Sum_probs=161.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|-.||++||.|...|.|+|||..+...+.. +..|..++..+.|+|.... ++++|+.|+.+++||+. +......
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~--~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s--~a~v~~~ 148 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ--LYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLS--TAYVQAE 148 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccHHHHHH--HhhccCceeEEEecccCCe-EEEecCCCceEEEEEcC--CcEEEEE
Confidence 35778999999999999999999765333333 4588999999999998664 89999999999999997 5555567
Q ss_pred eecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
+.+|++.|.|.+|+|. +..++|||.||+|++||++... ..+ .-..|..+|..+.+-|.|..+|++
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-------------~~v-~elnhg~pVe~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-------------SRV-VELNHGCPVESVLALPSGSLIASA 214 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-------------cee-EEecCCCceeeEEEcCCCCEEEEc
Confidence 8899999999999995 5688999999999999998731 222 233588899999999999999987
Q ss_pred eCCCcEEEEEcCCCeEEE-EecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 160 SPDRRIRVFWFRTGKLRR-VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
+ ...+++||+-+|..+- ....| ...++++.+..+++.|++++
T Consensus 215 g-Gn~vkVWDl~~G~qll~~~~~H------------------------------------~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 215 G-GNSVKVWDLTTGGQLLTSMFNH------------------------------------NKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred C-CCeEEEEEecCCceehhhhhcc------------------------------------cceEEEEEeecCCceEeecc
Confidence 6 5679999998765432 22111 23456788888899999999
Q ss_pred ccc-eEEEEcccCcEEEEeCC
Q 010302 239 LLG-IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 239 ~~g-i~v~d~~t~~~v~~~g~ 258 (513)
.++ +||+|+.+-+++...+-
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~~ 278 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWKY 278 (487)
T ss_pred cccceEEEEccceEEEEeeec
Confidence 887 99999888888887754
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=4.1e-21 Score=179.77 Aligned_cols=220 Identities=15% Similarity=0.231 Sum_probs=179.5
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|-++...|++|+.|..|++|++...+....-.+.+..+.+..+.+.+++. .+++++.|+.+++|++. +.+..+++
T Consensus 182 ~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wnvd--~~r~~~TL 257 (459)
T KOG0288|consen 182 EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWNVD--SLRLRHTL 257 (459)
T ss_pred EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeeecc--chhhhhhh
Confidence 455677889999999999999998776444445667778899999998888 78888899999999998 88999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcc-------------------------eeeeecCCccccc
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE-------------------------VSFRLKSDTNLFE 136 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 136 (513)
.+|+..|+++.|......+++|+.|.+|++||+....|.+.+ -.|+.....+...
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeE
Confidence 999999999999887777999999999999999876664331 1244445555555
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccc
Q 010302 137 ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 216 (513)
Q Consensus 137 ~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~ 216 (513)
...+ +.|+++..+++|..+.+++.|.++.+.|+++.+...++...- .
T Consensus 338 v~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g--------------------------------~ 384 (459)
T KOG0288|consen 338 VPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG--------------------------------F 384 (459)
T ss_pred eecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc--------------------------------c
Confidence 5444 489999999999999999999999999999998887774310 1
Q ss_pred cCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCC
Q 010302 217 TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 217 ~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~ 258 (513)
.....++-++|+|++.|++.|+.+| |+||+..+|++..++..
T Consensus 385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 385 KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 1223467889999999999999887 99999999999888754
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=180.71 Aligned_cols=270 Identities=19% Similarity=0.212 Sum_probs=194.0
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|||..- -+|+++ .-.|.||+..+......+ ......++++.|..||. ++++|+..|.|+|+|.+ +...++
T Consensus 32 l~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~--srFk~~v~s~~fR~DG~--LlaaGD~sG~V~vfD~k--~r~iLR 104 (487)
T KOG0310|consen 32 LCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTF--SRFKDVVYSVDFRSDGR--LLAAGDESGHVKVFDMK--SRVILR 104 (487)
T ss_pred EecCCCCCCceEEec-ccEEEEEecchhhhhhhH--HhhccceeEEEeecCCe--EEEccCCcCcEEEeccc--cHHHHH
Confidence 46888542 344443 357999999875554432 23447899999999999 99999999999999976 666778
Q ss_pred EeecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC-CCEEE
Q 010302 80 SKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-GKQFS 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~ 157 (513)
.+..|+.+|..+.|+|+ +..|++|+.|+.+++||+.+ ......+.+|+..|.|.+|+|- +..++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--------------a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--------------AYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC--------------cEEEEEecCCcceeEeeccccCCCeEEE
Confidence 88899999999999995 55678899999999999977 2335578899999999999995 55889
Q ss_pred EEeCCCcEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 158 ITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
|||+||+||+||.++. ..+..++. ..++..+.|=|+|..|++
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~elnh-------------------------------------g~pVe~vl~lpsgs~ias 213 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELNH-------------------------------------GCPVESVLALPSGSLIAS 213 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEecC-------------------------------------CCceeeEEEcCCCCEEEE
Confidence 9999999999999885 45444432 245668899999999999
Q ss_pred ccccceEEEEcccC-cEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 010302 237 ATLLGIKIVNLHTN-KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 315 (513)
Q Consensus 237 ~s~~gi~v~d~~t~-~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~ 315 (513)
+....+||||+.+| +.+.....|...+.++.++ .|+.-+.||+-|+++.+|
T Consensus 214 AgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~----------------------------s~~~rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 214 AGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLA----------------------------SDSTRLLSGSLDRHVKVF 265 (487)
T ss_pred cCCCeEEEEEecCCceehhhhhcccceEEEEEee----------------------------cCCceEeecccccceEEE
Confidence 99888999999855 4444444233244444333 455678899999999999
Q ss_pred ecCCCCCCcccCCCcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCeEEEEE
Q 010302 316 SRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMK 372 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~ 372 (513)
+-..- .=++.=+=+..-+.-+.. .....+++.-+-|-+-+.
T Consensus 266 d~t~~---------Kvv~s~~~~~pvLsiavs-------~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 266 DTTNY---------KVVHSWKYPGPVLSIAVS-------PDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred Eccce---------EEEEeeecccceeeEEec-------CCCceEEEecccceeeee
Confidence 73221 112222212222222111 144677788888877766
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.8e-20 Score=163.15 Aligned_cols=236 Identities=15% Similarity=0.109 Sum_probs=178.4
Q ss_pred CCCEEEEEeCCCcEEEEEccCCce-eEEEEcCCCCCcEEEEEEcC--CCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDM-MLMIRLPFIPGAVEWVYKQG--DVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~-~~~~~l~~~~~~v~~v~~s~--~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
-|++||||+.|++|+|+.+++... .....|.+|.+++..+.|.. .+. +|+|++.|+.|.||.-..+..+..+...
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIiWke~~g~w~k~~e~~ 99 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVIIWKEENGRWTKAYEHA 99 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEEEecCCCchhhhhhhh
Confidence 589999999999999999987654 66677889999999999987 555 9999999999999998755666677777
Q ss_pred cCCCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC---C----
Q 010302 83 VHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD---G---- 153 (513)
Q Consensus 83 ~h~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd---g---- 153 (513)
.|...|.+++|.|. |-.|++++.||.|.|.+.+.... -........|.-.|++++|.|- |
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-----------w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-----------WTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-----------ccchhhhhccccccceeeecCcCCCccccc
Confidence 99999999999994 66789999999999997765311 1223344568889999999996 5
Q ss_pred -------CEEEEEeCCCcEEEEEcCCCe--EEEEecccHHHHHHHhcCCCC---ccccccccccceeeeee---e-----
Q 010302 154 -------KQFSITSPDRRIRVFWFRTGK--LRRVYDESLEVAQDLQRSDAP---LYRLEAIDFGRRMAVEK---E----- 213 (513)
Q Consensus 154 -------~~l~s~s~D~~I~iwd~~tg~--~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~~~r~~~e~---e----- 213 (513)
+.|++|+.|+.|+||++.+++ +-+++.+|.+.++++++.|.- ...+.+....+++.+.. |
T Consensus 169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred cCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 579999999999999998864 345689999999999998863 22233333444443322 1
Q ss_pred --ccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcc-cCcEEE
Q 010302 214 --IEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLH-TNKVSR 254 (513)
Q Consensus 214 --~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~-t~~~v~ 254 (513)
+.+.-......+.|+.+|++|+.+..+ .+.+|--. .|+-..
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEE 293 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEE
Confidence 111222345678999999999877544 48888654 345443
No 109
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=188.62 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=136.9
Q ss_pred CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC--------------------------------C-----------
Q 010302 37 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA--------------------------------D----------- 73 (513)
Q Consensus 37 ~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~--------------------------------~----------- 73 (513)
.|.+.|+++.||++|+ ++|+|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGK--yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK--YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCCCCc--eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 7889999999999999 999999999999998753 0
Q ss_pred ---------------CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc
Q 010302 74 ---------------SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 138 (513)
Q Consensus 74 ---------------~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (513)
..++++.+.+|.+.|..|.|+.+ ++|+|+|.|.++|+|++.. .+++..|
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~--------------~~CL~~F- 406 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR--------------KECLKVF- 406 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC--------------cceeeEE-
Confidence 12455567799999999999866 4889999999999999976 3455555
Q ss_pred cCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc
Q 010302 139 KSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 217 (513)
Q Consensus 139 ~~~~~v~~v~~sp-dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~ 217 (513)
.|...|+||+|+| |.+||++||.|++||||++...+...-.+-
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl------------------------------------ 450 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL------------------------------------ 450 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh------------------------------------
Confidence 5999999999999 889999999999999999987766432211
Q ss_pred CCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEe
Q 010302 218 ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 256 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~ 256 (513)
...++.++|.|+|++.+.|++.| +++|+....+.+...
T Consensus 451 -~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 451 -RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred -hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 12457899999999999999998 789999887776554
No 110
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2e-21 Score=176.37 Aligned_cols=205 Identities=15% Similarity=0.203 Sum_probs=165.8
Q ss_pred CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe--------ecCCCCeEEEEEcCCCCEEEEEcCCCcE
Q 010302 38 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK--------KVHMGPVKVMRYNPVFDTVISADDKGII 109 (513)
Q Consensus 38 ~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~--------~~h~~~V~~l~~sp~~~~l~s~s~dg~i 109 (513)
...++.+..|+|+++ ++++++-||.|.+|+.. +++....+ .-+..+|.|+.|+.|...+++|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgq--yLvsgSvDGFiEVWny~--~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQ--YLVSGSVDGFIEVWNYT--TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred cccchhheeeCCCCc--eEeeccccceeeeehhc--cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 346788999999999 99999999999999986 55544333 3678899999999999999999999999
Q ss_pred EEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHH
Q 010302 110 EYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQD 188 (513)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~ 188 (513)
++|.+++ +.++..+. .|...|+|+.||.|+..+++++.|.++|+--+++|++++.+.+|...+
T Consensus 288 KvWri~t--------------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv-- 351 (508)
T KOG0275|consen 288 KVWRIET--------------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV-- 351 (508)
T ss_pred EEEEEec--------------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccc--
Confidence 9999888 56688887 599999999999999999999999999999999999999998876442
Q ss_pred HhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhhe
Q 010302 189 LQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLR 267 (513)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~ 267 (513)
+.+.|.++|+.+++++.+| |+||+..+++|+.++..-.....+..
T Consensus 352 ----------------------------------n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vns 397 (508)
T KOG0275|consen 352 ----------------------------------NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNS 397 (508)
T ss_pred ----------------------------------cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccccee
Confidence 3567999999999998776 99999999999988843221111111
Q ss_pred eccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 268 IALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
+- ..+++|--|..+...+.+||.+.....
T Consensus 398 v~-------------------------~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 398 VI-------------------------LLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred EE-------------------------EcCCCCceEEEEcCCCeEEEEeccceE
Confidence 11 114555556666777889999877643
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.6e-20 Score=166.88 Aligned_cols=252 Identities=15% Similarity=0.141 Sum_probs=170.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEE--EEcCCCCCcEEEEEEcC-----------------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLM--IRLPFIPGAVEWVYKQG----------------------------- 49 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~--~~l~~~~~~v~~v~~s~----------------------------- 49 (513)
|+||.||++|||++.|++|+||++..+..... ++.+-..++...+.|+|
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 68999999999999999999999976432110 00000000111111111
Q ss_pred ------------------------CCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcC
Q 010302 50 ------------------------DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD 105 (513)
Q Consensus 50 ------------------------~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~ 105 (513)
.+...+++|++.|..|.+|+++ ++.+.++......-+..+.||+|+++++++.
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk---Gq~L~~idtnq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK---GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC---CceeeeeccccccccceeeCCCCcEEEEecC
Confidence 1223378899999999999994 7888888877777888999999999999999
Q ss_pred CCcEEEecCC---CCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccc
Q 010302 106 KGIIEYWSPH---TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 106 dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~ 182 (513)
.-.+++|.+- .++ ++.-...+.+.+|++.|..++||++.+.+++.|.||++||||..-.- ..+..
T Consensus 249 TpDVkVwE~~f~kdG~---------fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY---~~~qD 316 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGT---------FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY---EAGQD 316 (420)
T ss_pred CCCceEEEEEeccCcc---------hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE---ecCCC
Confidence 9999999761 221 22345677889999999999999999999999999999999975311 11110
Q ss_pred HHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCC-CCc
Q 010302 183 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGK-VEN 261 (513)
Q Consensus 183 ~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~-~~~ 261 (513)
...+.. +. .........+.-+..+|+|+.|+.+....+++++..+|+..-.+.. |++
T Consensus 317 pk~Lk~----------------g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~ 374 (420)
T KOG2096|consen 317 PKILKE----------------GS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST 374 (420)
T ss_pred chHhhc----------------CC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcC
Confidence 000000 00 0001112233467899999999998888899999999887766643 221
Q ss_pred cchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 262 NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 262 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
. +..+.. .+|+..++|.+++ .++++.+.
T Consensus 375 ~-----------------Is~is~-----------~~~g~~~atcGdr-~vrv~~nt 402 (420)
T KOG2096|consen 375 T-----------------ISSISY-----------SSDGKYIATCGDR-YVRVIRNT 402 (420)
T ss_pred c-----------------eeeEEe-----------cCCCcEEeeecce-eeeeecCC
Confidence 1 111222 2777888888776 66777554
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=7.4e-21 Score=187.22 Aligned_cols=214 Identities=14% Similarity=0.154 Sum_probs=171.2
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCcee----EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMM----LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~----~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|++++|.|||.||.|++|++...... ....++.|...++.+....+++ .++|++.|-+|++|+...+..-+..+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCcchhHhh
Confidence 57889999999999999998743221 2334557888888888888887 89999999999999997433367888
Q ss_pred eecCCCCeEEEEE-cCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEE
Q 010302 81 KKVHMGPVKVMRY-NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~~h~~~V~~l~~-sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s 158 (513)
+..|...|.|+++ .++..+++||+-|+.|.+||+.++... ...+.. ......+. +++..|++++-++.|..+++
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~---l~~s~n-~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT---LVASFN-NVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh---hhhhcc-ccccccCCCCCccceeeeecCCcceEEEe
Confidence 8899999999999 788999999999999999999875210 000111 11122233 78899999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
|+..+.|++||.++++.+..+.+|... +..+..+++|..+++++
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdN------------------------------------Vr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDN------------------------------------VRVLLVNDDGTRLLSAS 232 (735)
T ss_pred cCcccceEEeccccccceeeeeccccc------------------------------------eEEEEEcCCCCeEeecC
Confidence 999999999999999988888776643 23566788999999988
Q ss_pred ccc-eEEEEcccCcEEEEeCCCC
Q 010302 239 LLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 239 ~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
.+| |++||+...+|+.++..|+
T Consensus 233 SDgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 233 SDGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred CCceEEeeeccccceeeeEEecc
Confidence 776 9999999999999997766
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=6.4e-20 Score=181.94 Aligned_cols=276 Identities=14% Similarity=0.175 Sum_probs=203.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEE-EEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEW-VYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~-v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
++-.++++|+|+++++|+-...+......+..+.+.+.. +++.+ .....+++|+.|.+|.+|.+. +..++.++.+|
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~--~~~P~~~LkgH 100 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFKLS--QAEPLYTLKGH 100 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccceEEEEecC--CCCchhhhhcc
Confidence 455789999999999999987777665555666666655 66655 343478999999999999997 88999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCc
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~ 164 (513)
+..|+|+.-..++. ++|||.|.++++|-. +++...+.+|...|++++.-|++ .++|||.|.+
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~----------------~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt 162 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRI----------------GELVYSLQGHTASVWAVASLPEN-TYVTGSADKT 162 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEecc----------------hhhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence 99999999887777 999999999999966 45667789999999999999988 7789999999
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEE
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKI 244 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v 244 (513)
|++|.- +++++++.+|.+.++ .+++=+++.||-++.+.-|+.
T Consensus 163 IklWk~--~~~l~tf~gHtD~VR------------------------------------gL~vl~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVR------------------------------------GLAVLDDSHFLSCSNDGSIRL 204 (745)
T ss_pred eeeccC--Cchhhhhccchhhee------------------------------------eeEEecCCCeEeecCCceEEE
Confidence 999975 888999998886654 334444566666666666999
Q ss_pred EEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCc
Q 010302 245 VNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPE 324 (513)
Q Consensus 245 ~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~ 324 (513)
|++ +|++++..-+|.+ .- ..+.| ..+..+++|+++|+.+.||...+-.
T Consensus 205 w~~-~ge~l~~~~ghtn-~v----------------Ysis~-----------~~~~~~Ivs~gEDrtlriW~~~e~~--- 252 (745)
T KOG0301|consen 205 WDL-DGEVLLEMHGHTN-FV----------------YSISM-----------ALSDGLIVSTGEDRTLRIWKKDECV--- 252 (745)
T ss_pred Eec-cCceeeeeeccce-EE----------------EEEEe-----------cCCCCeEEEecCCceEEEeecCceE---
Confidence 999 8888888876662 11 11122 2556678899999999999776322
Q ss_pred ccCCCcCccCCCCCcccccccccc-CCCccCC-CCCEEEEEeCCeEEEEEeCC--CCChHHH-HHHHHhh
Q 010302 325 DATKGRDIFNEKPPPDELLAVSDI-GNSVTTS-LPDNVILHTTMGDIHMKLYP--EECPKTV-ENFTTHC 389 (513)
Q Consensus 325 ~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~-~~~~v~~~t~~G~i~i~l~~--~~~P~~~-~~f~~l~ 389 (513)
+....|. +.|.... .+.-++.--+.|+|.|=--. ..|+..+ ++|-.-+
T Consensus 253 -----------------q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v 305 (745)
T KOG0301|consen 253 -----------------QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEV 305 (745)
T ss_pred -----------------EEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHH
Confidence 2222222 4454333 35566677788887653332 2355443 3554433
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=164.01 Aligned_cols=233 Identities=18% Similarity=0.236 Sum_probs=176.9
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
+.-+|.++||||.|.+|+|||+.+...+..+. .|.+.++++.|.+......++||+.||.|.+|+.. +..++.+++
T Consensus 49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~--~W~~~~slK 124 (362)
T KOG0294|consen 49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG--SWELLKSLK 124 (362)
T ss_pred EEecceeEeccCCCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEEEEcC--CeEEeeeec
Confidence 44589999999999999999999776665544 67899999999987655589999999999999997 889999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC
Q 010302 83 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D 162 (513)
+|...|+.++.+|.+++.++.+.|+.+++|++-.++- ..+.. -+.....+.|+|.|.+++.++.+
T Consensus 125 ~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~------------a~v~~---L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV------------AFVLN---LKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ccccccceeEecCCCceEEEEcCCceeeeehhhcCcc------------ceeec---cCCcceeeEEcCCCCEEEEEecc
Confidence 9999999999999999999999999999999866431 11111 12234459999999998877644
Q ss_pred CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccce
Q 010302 163 RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGI 242 (513)
Q Consensus 163 ~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi 242 (513)
.|-+|.+.+-+.+..+.. + ....++.|...+..++-+....|
T Consensus 190 -~i~i~q~d~A~v~~~i~~----------~---------------------------~r~l~~~~l~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIEN----------P---------------------------KRILCATFLDGSELLVGGDNEWI 231 (362)
T ss_pred -EEEEEecccHhHhhhhhc----------c---------------------------ccceeeeecCCceEEEecCCceE
Confidence 577887766544332211 0 12345667755444444455569
Q ss_pred EEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 243 KIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 243 ~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
++||.+.+.+...+-+|+. |+-.+..|. .++..+++|++.||.|.||..+
T Consensus 232 ~~~D~ds~~~~~~~~AH~~--RVK~i~~~~------------------------~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 232 SLKDTDSDTPLTEFLAHEN--RVKDIASYT------------------------NPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEeccCCCccceeeecchh--heeeeEEEe------------------------cCCceEEEEeccCceEEEEEcc
Confidence 9999999888888877773 333444333 3677899999999999999755
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=5.2e-20 Score=165.40 Aligned_cols=252 Identities=17% Similarity=0.149 Sum_probs=179.4
Q ss_pred Eec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc-ceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 3 VSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK-AGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 3 ~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~-~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|-| |.-.+.++|.|.++++||+.+.+..-.++++ +.|..-+++|-.. ..++++|..+-.|++.|+. ++..-++
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~--SGs~sH~ 183 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA--SGSFSHT 183 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCCCcEEEEecc--CCcceee
Confidence 444 5567788899999999999998877777754 6677777777554 4588999999999999998 8999999
Q ss_pred eecCCCCeEEEEEcCCCCE-EEEEcCCCcEEEecCCCC-CCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDT-VISADDKGIIEYWSPHTL-QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
+.+|.+.|.++.|+|..++ |++|+.||.|++||++.- .+....-....+....+..-..|.+.|+.++|+.|+.++++
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 9999999999999998776 489999999999999763 22110000111112223334468999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
.+.|..+++|+..+|+-- +.+....+.... ...-..+.--.++-|+....
T Consensus 264 ~gtd~r~r~wn~~~G~nt--l~~~g~~~~n~~----------------------------~~~~~~~~~~~s~vfv~~p~ 313 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNT--LREFGPIIHNQT----------------------------TSFAVHIQSMDSDVFVLFPN 313 (397)
T ss_pred ccCccceEEeecccCccc--cccccccccccc----------------------------ccceEEEeecccceEEEEec
Confidence 999999999999988752 111110000000 00000122223556777777
Q ss_pred ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 239 LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 239 ~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
..++.++++-.|+-++.+..| .+-+..++|++. =.-.-+|.-++.||.|.-
T Consensus 314 ~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~-------------------------fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 314 DGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPD-------------------------FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CCeEEEEEccCceEEEeeecc---cceeeEEeecCc-------------------------hhhhhccccCCccccccc
Confidence 778999999999999988665 455566666642 112456788999999976
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-18 Score=157.27 Aligned_cols=204 Identities=16% Similarity=0.193 Sum_probs=158.9
Q ss_pred EecCCCEEEEEeC--CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 3 VSVDGLLCCSISN--DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 3 ~s~dg~~las~s~--D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|-.....++.++. |.+||..++.+.+.++-+. +|...|..++.+|-+. .++|++.|++|++||++ ..++...
T Consensus 64 Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~--GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR--~~~cqg~ 137 (311)
T KOG1446|consen 64 FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP--GHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLR--VKKCQGL 137 (311)
T ss_pred EecCCceEEEccCCCCCceEEEEeecCceEEEcC--CCCceEEEEEecCCCC--eEEecccCCeEEeeEec--CCCCceE
Confidence 4444444444554 8999999999988877654 9999999999999887 89999999999999998 5566555
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC-CCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF-PESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s 158 (513)
+.. ..-..++|.|.|-++|++.....|+++|++.... |-. ...+. .-......+.|||||++|+.
T Consensus 138 l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~-----------tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 138 LNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT-----------TFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred Eec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCce-----------eEccCCCCccceeeeEEcCCCCEEEE
Confidence 532 2334688999999999999888999999988632 211 11111 23556889999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
+...+.+++.|.-+|..+.++.++... ..-...++|.|+|+|++.++
T Consensus 205 sT~~s~~~~lDAf~G~~~~tfs~~~~~---------------------------------~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTVKSTFSGYPNA---------------------------------GNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred EeCCCcEEEEEccCCcEeeeEeeccCC---------------------------------CCcceeEEECCCCcEEEEec
Confidence 999999999999999988877642211 11224678999999999999
Q ss_pred ccc-eEEEEcccCcEEEEeCC
Q 010302 239 LLG-IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 239 ~~g-i~v~d~~t~~~v~~~g~ 258 (513)
.+| |.+|++.+|..+..+.+
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecC
Confidence 876 99999999999988855
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.1e-19 Score=162.22 Aligned_cols=196 Identities=17% Similarity=0.245 Sum_probs=146.7
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccC-CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVN-YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~-~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+||| ...+++.+|.|++||+|+++. +.... .....|.+++.+++|+.++. .+++++.|+.+++||+. ++ .+
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL~--S~-Q~ 106 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDLA--SG-QV 106 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEcc--CC-Ce
Confidence 58999 556777889999999999986 33333 33446889999999999998 89999999999999997 55 55
Q ss_pred EEeecCCCCeEEEEEcCCCC--EEEEEcCCCcEEEecCCCCC------CCCcc-------------------eeeee---
Q 010302 79 ISKKVHMGPVKVMRYNPVFD--TVISADDKGIIEYWSPHTLQ------FPESE-------------------VSFRL--- 128 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~------~~~~~-------------------~~~~~--- 128 (513)
..+..|.++|.++.|-+... .|++||.|.+|+.||++... +|+.. ..|.+
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence 66778999999999987554 89999999999999987532 23221 11110
Q ss_pred -----------------------------------------cCC--ccccccccCCc---------ceEEEEEcCCCCEE
Q 010302 129 -----------------------------------------KSD--TNLFEILKSKT---------TVSAIEVSPDGKQF 156 (513)
Q Consensus 129 -----------------------------------------~~~--~~~~~~~~~~~---------~v~~v~~spdg~~l 156 (513)
..+ ..-+.++.|.. .|++|+|+|.-..|
T Consensus 187 ~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 187 PTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTL 266 (347)
T ss_pred cchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceE
Confidence 011 23344555542 37789999998999
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
+|++.||++.+||-.....+++... ...+++...|+.+|.+++|
T Consensus 267 vTaGsDGtf~FWDkdar~kLk~s~~------------------------------------~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 267 VTAGSDGTFSFWDKDARTKLKTSET------------------------------------HPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred EEecCCceEEEecchhhhhhhccCc------------------------------------CCCccceeEecCCCCEEEE
Confidence 9999999999999765544443321 2245678899999999999
Q ss_pred cc
Q 010302 237 AT 238 (513)
Q Consensus 237 ~s 238 (513)
+.
T Consensus 311 A~ 312 (347)
T KOG0647|consen 311 AL 312 (347)
T ss_pred Ee
Confidence 85
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=1.4e-19 Score=171.91 Aligned_cols=211 Identities=18% Similarity=0.162 Sum_probs=157.2
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCce-----eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDM-----MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~-----~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
|+|++. .-+|++++.|++|++||+..... .....+.+|...+..++|++.... ++++++.|+.+.|||++..+
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCC
Confidence 467764 34688999999999999985432 233445689999999999987665 78888999999999999555
Q ss_pred CcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
.++.+...+|.++|.|++|+| ++..||+||.|++|++||+|+.. .+++.+.+|+..|.++.|||+.
T Consensus 262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------------~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------------KPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------cCceeccCCCcceEEEEeCCCC
Confidence 667777889999999999999 66778999999999999999854 5788999999999999999965
Q ss_pred -CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccc-cCCCCCCceEEcCCC
Q 010302 154 -KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK-TETAPPSNAIFDESS 231 (513)
Q Consensus 154 -~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~-~~~~~~~~i~fd~~g 231 (513)
..||+++.|+.+.+||+..-...+.- ......+. |.-+.+ .....+..+.|+|+.
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~-------eda~dgpp----------------EllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSP-------EDAEDGPP----------------ELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred CceeEecccCCcEEEEeccccccccCh-------hhhccCCc----------------ceeEEecCcccccccccCCCCC
Confidence 57888889999999998652211110 00111111 100111 112345677899999
Q ss_pred CEEEEc-cccc-eEEEEcc
Q 010302 232 NFLIYA-TLLG-IKIVNLH 248 (513)
Q Consensus 232 ~~li~~-s~~g-i~v~d~~ 248 (513)
.+++++ +.++ ++||...
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 887765 4444 7999885
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.5e-19 Score=179.33 Aligned_cols=242 Identities=18% Similarity=0.229 Sum_probs=187.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|++||||++||+|..-|+++||++...+....+ +.|...|.++.++. .-...++++++.|..|+|||+. .+..++.
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~--eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-rny~l~q 541 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM--EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK-RNYDLVQ 541 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhhhhhhe--ecccceeEEEeecCchhhhHhhhhccCCceEEEEecc-cccchhh
Confidence 578999999999999999999999876655544 48999999999884 3333489999999999999986 3667888
Q ss_pred EeecCCCCeEEEEEcCCC--CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc---cccCCcceEEEEEcCCCC
Q 010302 80 SKKVHMGPVKVMRYNPVF--DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE---ILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~spdg~ 154 (513)
++.+|.+.|+++.|.-.| ..+++++.|..|. ++..... ....++. -.-.+..++.|+..|..+
T Consensus 542 tld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~-----------~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKA-----------SSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred hhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccc-----------cCceeccccccccccceEEEeeeCCCcc
Confidence 999999999999998876 6789999999875 4332200 0011111 111346789999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
++++++.|..|+|||+.+|+..+.|+++. .....+..+..||+|.||
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~---------------------------------~~eG~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSR---------------------------------DHEGDLIKVILDPSGIYL 656 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeecccc---------------------------------cCCCceEEEEECCCccEE
Confidence 99999999999999999999999997632 112344567899999999
Q ss_pred EEcc-ccceEEEEcccCcEEEEe-CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 235 IYAT-LLGIKIVNLHTNKVSRIL-GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 235 i~~s-~~gi~v~d~~t~~~v~~~-g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
++.. +..+.++|..+|+|+... |+.| .+.-+++ .+|..=+.|.+.|+-|
T Consensus 657 atScsdktl~~~Df~sgEcvA~m~GHsE-~VTG~kF----------------------------~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSGECVAQMTGHSE-AVTGVKF----------------------------LNDCKHLISVSGDGCI 707 (1080)
T ss_pred EEeecCCceEEEEeccchhhhhhcCcch-heeeeee----------------------------cccchhheeecCCceE
Confidence 9874 557999999999999765 4444 2222222 2677778999999999
Q ss_pred EEEecCC
Q 010302 313 YLFSRRE 319 (513)
Q Consensus 313 ~i~~~~~ 319 (513)
|||.-..
T Consensus 708 FvW~lp~ 714 (1080)
T KOG1408|consen 708 FVWKLPL 714 (1080)
T ss_pred EEEECch
Confidence 9997543
No 120
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=5.1e-19 Score=157.14 Aligned_cols=229 Identities=20% Similarity=0.242 Sum_probs=170.4
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe---CCCCeEEEEecCCC-----
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD---RNSSFVHIYDARAD----- 73 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~---~~d~~I~iwd~~~~----- 73 (513)
+.+.+.++|+||+.|.++++||+++|+.+..+.. +..+..+.|+.+++..++.+. +..+.|.++|++..
T Consensus 59 Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 59 DIDWDSKHLITGSADQTAKLWDVETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred EecCCcceeeeccccceeEEEEcCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 3456778999999999999999999999988874 478999999999884333332 23567899998732
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
+.++...+..+.+.++.+.|.|.++.|++|.+||.|.+||+++++ +.+.....|...|+.+++|||.
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~s~d~ 202 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQFSRDR 202 (327)
T ss_pred ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccccCCc
Confidence 346688888999999999999999999999999999999998843 2233445688899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccc-c----cccc----------ccce---eeeeeecc
Q 010302 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR-L----EAID----------FGRR---MAVEKEIE 215 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~-l----~~~~----------~~~r---~~~e~e~~ 215 (513)
.+++++|.|.+-++||+.+.++++++..... +.+...++..-.. + +.++ |..| +..|.|+.
T Consensus 203 T~FiT~s~Dttakl~D~~tl~v~Kty~te~P-vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 203 TYFITGSKDTTAKLVDVRTLEVLKTYTTERP-VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred ceEEecccCccceeeeccceeeEEEeeeccc-ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 9999999999999999999999999865332 2333333321000 0 1111 1111 12344554
Q ss_pred c--cCCCCCCceEEcCCCCEEEEccccc-eEEEEc
Q 010302 216 K--TETAPPSNAIFDESSNFLIYATLLG-IKIVNL 247 (513)
Q Consensus 216 ~--~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~ 247 (513)
. ..-.++++++|+|+|+..++|..+| |++.-.
T Consensus 282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 3 3346889999999999988888776 665544
No 121
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=1.1e-19 Score=164.30 Aligned_cols=219 Identities=15% Similarity=0.272 Sum_probs=169.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.|+|....|++++.|++|++||...-...+-++.-.....+.+++|+|.+. +++.|..-.++++||++ +.++...
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~--T~Qcfvs 253 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVN--TYQCFVS 253 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc--eEEEecCCCceeEEecc--ceeEeee
Confidence 5799999999999999999999997533222222212345799999999999 88899999999999998 6665544
Q ss_pred ee---cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CC-cceEEEEEcCCCCE
Q 010302 81 KK---VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SK-TTVSAIEVSPDGKQ 155 (513)
Q Consensus 81 ~~---~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~v~~spdg~~ 155 (513)
-. +|++.|+++.+++.+++.+++|.||.|++||--+ +.++.++.. |. ..|.+..|..+|++
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS--------------~rCv~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS--------------NRCVRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeecccc--------------HHHHHHHHhhcCCceeeeEEEccCCeE
Confidence 32 8999999999999999999999999999998755 455666654 54 45999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
+++.+.|..+++|.+.+|++++.+.+.-.. |+ ...-+.++|+.+..|++
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~t-------------------gr------------q~~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTT-------------------GR------------QKHRTQAVFNHTEDYVL 368 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcc-------------------cc------------hhhhhhhhhcCccceEE
Confidence 999999999999999999999998763211 00 01224677899999999
Q ss_pred Ecccc--ceEEEEcccCcEEEEeC-CCCccchhhee
Q 010302 236 YATLL--GIKIVNLHTNKVSRILG-KVENNDRFLRI 268 (513)
Q Consensus 236 ~~s~~--gi~v~d~~t~~~v~~~g-~~~~~~r~~~~ 268 (513)
..... .+.-||..++..+..+. +|.+..|.+.-
T Consensus 369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH 404 (430)
T ss_pred ccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence 88654 47889998877665552 34446665543
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=7.3e-19 Score=159.36 Aligned_cols=232 Identities=19% Similarity=0.183 Sum_probs=167.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|.|+|.+..|+.+++||++++||+....+...++ |..++..++|.++. .+++|+-|+.|+.+|+. . .....
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln--~-~~~~~ 89 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---HGAPLLDCAFADES---TIVTGGLDGQVRRYDLN--T-GNEDQ 89 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---cCCceeeeeccCCc---eEEEeccCceEEEEEec--C-Cccee
Confidence 5789988888889999999999999876666555 66889999998754 58899999999999996 3 33445
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+..|..+|.|+.+++....+++||.|++|++||.+... ....+. ....|.++.. .|+.|++|+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--------------~~~~~d-~~kkVy~~~v--~g~~LvVg~ 152 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--------------VVGTFD-QGKKVYCMDV--SGNRLVVGT 152 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--------------cccccc-cCceEEEEec--cCCEEEEee
Confidence 66899999999999988999999999999999997621 122222 2337888877 788999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccH-HH-HHHHhcCCC-Cccccccccccceeeeee------------------eccc--c
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESL-EV-AQDLQRSDA-PLYRLEAIDFGRRMAVEK------------------EIEK--T 217 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~-~~-i~~~~~~~~-~~~~l~~~~~~~r~~~e~------------------e~~~--~ 217 (513)
.|..+.+||+++.....+..++. +. +.+++.-++ .-|.+.+ ...|+++|- ..++ .
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS--ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS--IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe--ecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 99999999999866543332221 11 222322221 1121111 223444431 1111 1
Q ss_pred CCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC
Q 010302 218 ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
...++..++|+|--+.+++|..+| |-+||+.+.+.++.+.+.+
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 235778999999988999988887 7899999998888876654
No 123
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=4.9e-19 Score=184.41 Aligned_cols=213 Identities=18% Similarity=0.191 Sum_probs=166.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC------C----------ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN------Y----------DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSF 64 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~------~----------~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~ 64 (513)
|.|||||++||+||+|+.|.||+... + .......+.+|+..|..+.|+|++. ++++++.|++
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~Dns 152 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNS 152 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccce
Confidence 46999999999999999999999872 0 0123344568999999999999888 9999999999
Q ss_pred EEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCC-----------Cccee----e---
Q 010302 65 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP-----------ESEVS----F--- 126 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~----~--- 126 (513)
|.||+.+ +.+.+..+.+|.+.|..+.|.|-|++|+|-+.|++|+||.+.+..+. ...+. |
T Consensus 153 Viiwn~~--tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 153 VIIWNAK--TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred EEEEccc--cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 9999998 78999999999999999999999999999999999999986553331 11111 1
Q ss_pred --------------------eecCCccccccccCCcceEEEEEcC-----CCC------------EEEEEeCCCcEEEEE
Q 010302 127 --------------------RLKSDTNLFEILKSKTTVSAIEVSP-----DGK------------QFSITSPDRRIRVFW 169 (513)
Q Consensus 127 --------------------~~~~~~~~~~~~~~~~~v~~v~~sp-----dg~------------~l~s~s~D~~I~iwd 169 (513)
+...-+.-..+.+|.+++.++.|+| ..+ .+|+||.|++|.||.
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 1112233456778999999999998 111 578999999999999
Q ss_pred cCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcc
Q 010302 170 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 248 (513)
Q Consensus 170 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~ 248 (513)
....+.+....+ + -...+..++|+|+|..|..+|.+| |.++.+.
T Consensus 311 T~~~RPl~vi~~-------l----------------------------f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 311 TALPRPLFVIHN-------L----------------------------FNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cCCCCchhhhhh-------h----------------------------hcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 877666544321 0 113456789999999999999887 8888887
Q ss_pred cCcE
Q 010302 249 TNKV 252 (513)
Q Consensus 249 t~~~ 252 (513)
.++.
T Consensus 356 e~El 359 (942)
T KOG0973|consen 356 EKEL 359 (942)
T ss_pred hHHh
Confidence 7663
No 124
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=154.26 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=153.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.|||+|+++|.++.|..|...|.++.+......+. ..+.-+.|..+++ +++.....|.|.|.... ..+++.+
T Consensus 112 i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~---~e~ne~~w~~~nd--~Fflt~GlG~v~ILsyp--sLkpv~s 184 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK---FEVNEISWNNSND--LFFLTNGLGCVEILSYP--SLKPVQS 184 (313)
T ss_pred EEEcCCCCEEEEecCcccEEEEEecccceeehhccc---ceeeeeeecCCCC--EEEEecCCceEEEEecc--ccccccc
Confidence 479999999999999999999999987776655533 4567777875555 44444556899999887 8899999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
++.|...+.||.|+|+|++|++|+.|..+.+||+... -++..+..+.-+|..+.||.||++||++|
T Consensus 185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--------------iC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--------------ICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred cccCCcceEEEEECCCCceEeeccccceeeccChhHh--------------hhheeeccccCceEEEEeccCcceeeccC
Confidence 9999999999999999999999999999999999763 34667777888999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|..|-|=+++||..+..+.. ..+..+++|+|...+|+|+.++
T Consensus 251 EDh~IDIA~vetGd~~~eI~~-------------------------------------~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPC-------------------------------------EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeec-------------------------------------cCCceeEEecCCCceeeEEecC
Confidence 999999999999988776532 2345689999999999998765
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=175.76 Aligned_cols=259 Identities=10% Similarity=0.091 Sum_probs=194.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC-ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY-DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~-~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|.|+|++|.+|+.|+.|++|+...- +.-..+. .+...+.+++.. +. .+++++.+++|.+|.+. +++.-.
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~fp--s~~~~~ 90 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIACY--SN--HFLTGSEQNTVLRYKFP--SGEEDT 90 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEeec--cc--ceEEeeccceEEEeeCC--CCCccc
Confidence 578999999999999999999998754 2212221 134455555543 33 78999999999999987 665555
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+...+-++.+++|+-+|++++.||.|-.|++.+..+ ......+.+|+++|.++.|+|.+++||+.
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--------------~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--------------SSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc--------------cchheeecccCCceeeeeEcCCCCEEEEE
Confidence 5566678999999999999999999999999998866 44567889999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC-CCEEEEcc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES-SNFLIYAT 238 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~-g~~li~~s 238 (513)
+-||.|++||+.++.+.+++.+-... .++. .....+.++|+|+ |++++++.
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k~----------------n~~~------------~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDKD----------------NEFI------------LSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCcc----------------cccc------------ccceeeeeeecCCCCeEEeecc
Confidence 99999999999999988777541100 0000 0123356799998 78888899
Q ss_pred ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 239 LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 239 ~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
...|++++..+.+....+........ +....| .|.++.+|+++.++.|-||+-+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~-------------------------~~~~~w-sPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSK-------------------------FSDLQW-SPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred CCeEEEEccCCceeheeecccccccc-------------------------eEEEEE-cCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999988865441111 122233 3779999999999999999866
Q ss_pred CCCCCcccCCCcCccCCCCC
Q 010302 319 EPEEPEDATKGRDIFNEKPP 338 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~p~ 338 (513)
.-+..+ ..+-|+++.+.
T Consensus 263 t~~~~~---~~~~Vc~~aw~ 279 (933)
T KOG1274|consen 263 THERHE---FKRAVCCEAWK 279 (933)
T ss_pred cchhcc---ccceeEEEecC
Confidence 422111 23556666543
No 126
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.5e-18 Score=173.55 Aligned_cols=202 Identities=15% Similarity=0.103 Sum_probs=169.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC-----CceeEEEEcC-----CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN-----YDMMLMIRLP-----FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA 70 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~-----~~~~~~~~l~-----~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~ 70 (513)
|+.+||++.+++||.|.+|++||..- +.....+.+. ..+..+.++.+||++. +++.+--|++++||-+
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk--~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK--LLAVSLLDNTVKVYFL 537 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc--EEEEEeccCeEEEEEe
Confidence 46789999999999999999999851 1111111111 1346789999999999 9999999999999999
Q ss_pred CCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc
Q 010302 71 RADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 150 (513)
Q Consensus 71 ~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 150 (513)
. +.+...++.+|.-||.|+..+||++++++||.|..|+||-+.= +.+...+.+|...|.++.|.
T Consensus 538 D--tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF--------------GDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 538 D--TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF--------------GDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred c--ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc--------------chhhhhhhcccCceeEEEEc
Confidence 7 8888889999999999999999999999999999999996644 66788899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 151 PDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 151 pdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
|....+.+++.|+.|+-||-..-++++++++|... +.+++..|+
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e------------------------------------v~cLav~~~ 645 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE------------------------------------VWCLAVSPN 645 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchhe------------------------------------eeeeEEcCC
Confidence 99999999999999999999999999999887633 346678889
Q ss_pred CCEEEEccc-cceEEEEcccCcEEEEe
Q 010302 231 SNFLIYATL-LGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 231 g~~li~~s~-~gi~v~d~~t~~~v~~~ 256 (513)
|.|+++++. ..|++|.-..-.++..-
T Consensus 646 G~~vvs~shD~sIRlwE~tde~~~lEe 672 (888)
T KOG0306|consen 646 GSFVVSSSHDKSIRLWERTDEILILEE 672 (888)
T ss_pred CCeEEeccCCceeEeeeccCcceeeeh
Confidence 999999987 57999998665555444
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.9e-18 Score=146.00 Aligned_cols=202 Identities=16% Similarity=0.213 Sum_probs=155.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce---eEEEEcCCCCCcEEEEEEcCCCc--ceEEEEe-CCCCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM---MLMIRLPFIPGAVEWVYKQGDVK--AGLAISD-RNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~---~~~~~l~~~~~~v~~v~~s~~~~--~~~l~s~-~~d~~I~iwd~~~~~ 74 (513)
++|||+|++||+||.|++|++.-.+...+ -..+.+..|.+.+..++|..++. ..+++++ ..|..|.+-|.. .
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~--~ 172 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG--R 172 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC--C
Confidence 47999999999999999999986654222 13456667889999999975543 2355554 468888888887 8
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
++..+.+.+|++.|.++ ++-++-.+++|+.|.+|++||++-..+... .+.....---..+.|.+++..|.|+
T Consensus 173 g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~-------l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 173 GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT-------LDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee-------ccCcccCCCcccceeEEEEECCCcc
Confidence 89999999999999887 455788999999999999999976333111 0000000001235699999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
+|++|-.|....+||++-++.++.+..|.. .+.++.|+|...|+
T Consensus 245 ll~sg~~dssc~lydirg~r~iq~f~phsa------------------------------------dir~vrfsp~a~yl 288 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGRMIQRFHPHSA------------------------------------DIRCVRFSPGAHYL 288 (350)
T ss_pred eeeeccCCCceEEEEeeCCceeeeeCCCcc------------------------------------ceeEEEeCCCceEE
Confidence 999999999999999999999998865442 34578899999999
Q ss_pred EEcccc-ceEEEEcc
Q 010302 235 IYATLL-GIKIVNLH 248 (513)
Q Consensus 235 i~~s~~-gi~v~d~~ 248 (513)
+.++++ .|++-|+.
T Consensus 289 lt~syd~~ikltdlq 303 (350)
T KOG0641|consen 289 LTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEecccceEEEeecc
Confidence 999987 48888884
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.3e-20 Score=183.20 Aligned_cols=198 Identities=13% Similarity=0.174 Sum_probs=166.2
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
.++.+++|+.|..+.+|.+.... ..+.+.+|...|.++.|.+... ++++|+.+|+|++||+. ..+.++++.+|.
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDle--eAk~vrtLtgh~ 112 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDLE--EAKIVRTLTGHL 112 (825)
T ss_pred cceeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcchh--hhcccccCCceeeeehh--hhhhhhhhhccc
Confidence 45789999999999999997544 3444668999999999998877 99999999999999998 888999999999
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 165 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I 165 (513)
..+.++.|+|-+.++++++.|+.+++||.+. ..+.+.+.+|...+..+.|+|+|+++++++.|.++
T Consensus 113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk--------------~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRK--------------KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred cCcceeeeccceEEeccccccccceehhhhc--------------cCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 9999999999999999999999999999976 34577788899999999999999999999999999
Q ss_pred EEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEE
Q 010302 166 RVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKI 244 (513)
Q Consensus 166 ~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v 244 (513)
+|||...|+.+..|..|...+. .+-|+|..-.+..|+.+. +++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~------------------------------------sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQ------------------------------------SLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred eeeccccccccccccccccccc------------------------------------ccccCchhhhhccCCCCceeee
Confidence 9999999999988876553332 223555555566666554 899
Q ss_pred EEcccCcEEEEeCCC
Q 010302 245 VNLHTNKVSRILGKV 259 (513)
Q Consensus 245 ~d~~t~~~v~~~g~~ 259 (513)
||+.+=+++-..+..
T Consensus 223 ~dletfe~I~s~~~~ 237 (825)
T KOG0267|consen 223 WDLETFEVISSGKPE 237 (825)
T ss_pred eccceeEEeeccCCc
Confidence 999887776665443
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=1.9e-18 Score=155.44 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=203.9
Q ss_pred CCCEEEEEeCCCcEEEEEccCCc------e----eEEE---EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYD------M----MLMI---RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~------~----~~~~---~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
.|+|+++|+.||.|.+||+++-. + ...+ .-..|...|..+.|-|.... ++.+++.|.++++||.+
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mFtssSFDhtlKVWDtn- 132 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MFTSSSFDHTLKVWDTN- 132 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-eeecccccceEEEeecc-
Confidence 58999999999999999998533 1 1111 12356667888999887665 88899999999999997
Q ss_pred CCCcceEEeecCCCCeEEEEEcCC---CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEE
Q 010302 73 DSNEPLISKKVHMGPVKVMRYNPV---FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV 149 (513)
Q Consensus 73 ~~~~~i~~~~~h~~~V~~l~~sp~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (513)
+.+....++ -.+.|.+-+++|- ..++++|..|-.|++.|+.+ +...+.+.+|...|.++.|
T Consensus 133 -TlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S--------------Gs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 133 -TLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS--------------GSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred -cceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC--------------CcceeeeccccCceEEEEe
Confidence 666666664 4567888999983 45678888888999999987 4557889999999999999
Q ss_pred cCCCCE-EEEEeCCCcEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEE
Q 010302 150 SPDGKQ-FSITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIF 227 (513)
Q Consensus 150 spdg~~-l~s~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~f 227 (513)
||...+ |++|+.||.||+||++.- -++.+++.|..... +.. + -.......+..++|
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~-------p~~-------------~--~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP-------PIL-------------K--TNTAHYGKVNGLAW 254 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC-------ccc-------------c--ccccccceeeeeee
Confidence 998875 578999999999999875 78888887653100 000 0 00112345678999
Q ss_pred cCCCCEEEEc-cccceEEEEcccCcEE-EEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 228 DESSNFLIYA-TLLGIKIVNLHTNKVS-RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 228 d~~g~~li~~-s~~gi~v~d~~t~~~v-~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
..+|.+++.. +...+++|+..+|+.. +.+|.-- +... ...++..-.|+.+.+. ... ..+.+-+.+
T Consensus 255 tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~---~n~~--------~~~~~~~~~~~s~vfv-~~p-~~~~lall~ 321 (397)
T KOG4283|consen 255 TSDARYLASCGTDDRIRVWNMESGRNTLREFGPII---HNQT--------TSFAVHIQSMDSDVFV-LFP-NDGSLALLN 321 (397)
T ss_pred cccchhhhhccCccceEEeecccCccccccccccc---cccc--------ccceEEEeecccceEE-EEe-cCCeEEEEE
Confidence 9999998876 4556999999988753 3333211 0000 0001111122211111 111 247788889
Q ss_pred eecCceEEEEecCCCCCCcccCCCcCccCCCCCcccccccc---ccCCCcc-CCCCCEEEEEeCCeEEEEEeCCC
Q 010302 306 AFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVS---DIGNSVT-TSLPDNVILHTTMGDIHMKLYPE 376 (513)
Q Consensus 306 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~-~~~~~~v~~~t~~G~i~i~l~~~ 376 (513)
..+-.+|.+|+-.. ..-++.-++|.-++.-+-. .+..|.+ ...+...-..++.+++.-++|.+
T Consensus 322 ~~sgs~ir~l~~h~--------k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~~pt~~~d~~t~~~~~~~~~~~ 388 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHL--------KRINCAAYRPDFEQCFTGDMNGNIYMWSPALKSPTKISDLETRRNIIQEVYDS 388 (397)
T ss_pred ccCceEEEeeeccc--------ceeeEEeecCchhhhhccccCCccccccccccCCccccccccchhhHHHHHhh
Confidence 99999999997652 1344555555433222111 1112222 23444455666777777777754
No 130
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=3.7e-19 Score=156.53 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=141.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+.|.++|++|+.++-+||||++..+. ....+.+|++.|..+-|+...+ .++|++.|++|++||.+ +++.+++
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~--~iLSSadd~tVRLWD~r--Tgt~v~s 180 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCHEDK--CILSSADDKTVRLWDHR--TGTEVQS 180 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEeccCc--eEEeeccCCceEEEEec--cCcEEEE
Confidence 58999999999999999999999986543 3345678999999999988777 67777999999999999 8899998
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc---------------------------ceeeeecCCcc
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES---------------------------EVSFRLKSDTN 133 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------------~~~~~~~~~~~ 133 (513)
+. ...+|+++.++++|++|..+. .+.|..||..++...+. .++|++.+++.
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCce
Confidence 86 456899999999999876665 55799999876544311 46688889998
Q ss_pred cccc-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q 010302 134 LFEI-LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175 (513)
Q Consensus 134 ~~~~-~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~ 175 (513)
+..+ ++|.++|.|+.|+|||..-++||.||+||+|-...++.
T Consensus 259 i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 259 IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 8886 78999999999999999999999999999998776654
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=2.3e-18 Score=159.72 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=131.6
Q ss_pred CeEecCC-CEEEEEeCCCcEEEEEccCCceeE-EEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDG-LLCCSISNDKSVKIYDVVNYDMML-MIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg-~~las~s~D~~v~iwd~~~~~~~~-~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|||-- -.|+||..-+.|++|...++.... ...+.+|...|..++|||.... +++||+.|++|+|||++.+..+..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 5788822 237788888999999998865431 2234468899999999998665 899999999999999995433444
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFS 157 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~ 157 (513)
...+.|.+.|..|.|+..-.+|++|+.||+++|||+++.+. ++++..+..|+.+|+++.|+|.. ..|+
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~-----------~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS-----------GQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC-----------CCcceeEEeccCCeeEEEeccccCceEE
Confidence 44479999999999999888999999999999999998654 67888999999999999999954 5778
Q ss_pred EEeCCCcEEEEEcCC
Q 010302 158 ITSPDRRIRVFWFRT 172 (513)
Q Consensus 158 s~s~D~~I~iwd~~t 172 (513)
+++.|..|.|||+..
T Consensus 365 asg~D~QitiWDlsv 379 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSV 379 (440)
T ss_pred eccCCCcEEEEEeec
Confidence 888999999999864
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=2.6e-18 Score=170.68 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=168.3
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
|+-+|++|+.|.+|.+|...+..+...+. +|...|++++...++ .++||+.|.++++|-. +++...+++|+
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk--gH~snVC~ls~~~~~---~~iSgSWD~TakvW~~----~~l~~~l~gH~ 140 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLK--GHKSNVCSLSIGEDG---TLISGSWDSTAKVWRI----GELVYSLQGHT 140 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhh--ccccceeeeecCCcC---ceEecccccceEEecc----hhhhcccCCcc
Confidence 45568899999999999999888766644 899999988765544 4899999999999975 46777899999
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 165 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I 165 (513)
..|++++.-|.. .++|||.|.+|++|.- ++.+.++.+|...|..+++-|++. |++++.||.|
T Consensus 141 asVWAv~~l~e~-~~vTgsaDKtIklWk~----------------~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~I 202 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGSADKTIKLWKG----------------GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSI 202 (745)
T ss_pred hheeeeeecCCC-cEEeccCcceeeeccC----------------CchhhhhccchhheeeeEEecCCC-eEeecCCceE
Confidence 999999999988 8899999999999954 567889999999999999987765 5788999999
Q ss_pred EEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc-cceEE
Q 010302 166 RVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKI 244 (513)
Q Consensus 166 ~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~-~gi~v 244 (513)
++|++ +|+++..+.+|...+. ++....++..++++.. ..++|
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vY------------------------------------sis~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVY------------------------------------SISMALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred EEEec-cCceeeeeeccceEEE------------------------------------EEEecCCCCeEEEecCCceEEE
Confidence 99999 8888888877653321 3333345566666554 45999
Q ss_pred EEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 245 VNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 245 ~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
|+.. +|++.+.... ...+...++. ++- +++|+.||+|||||-+
T Consensus 246 W~~~--e~~q~I~lPt--tsiWsa~~L~--------------------------NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 246 WKKD--ECVQVITLPT--TSIWSAKVLL--------------------------NGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eecC--ceEEEEecCc--cceEEEEEee--------------------------CCC-EEEeccCceEEEEEec
Confidence 9987 7777764322 2222332221 111 7889999999999966
No 133
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.1e-18 Score=167.81 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=179.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|| ..+.||.+ ....|++|+..+++......+. ...++.+.|++++. +|+.|..++.|.|||.. ..+.+..
T Consensus 183 ldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~--~~k~~~~ 254 (484)
T KOG0305|consen 183 LDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGS--HLAVGTSDGTVQIWDVK--EQKKTRT 254 (484)
T ss_pred hhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecC--CCceEEEEECCCCC--EEEEeecCCeEEEEehh--hcccccc
Confidence 4577 34456654 4568999999998876665543 68899999999999 99999999999999997 7888888
Q ss_pred eec-CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc-ccccCCcceEEEEEcCCCCEEEE
Q 010302 81 KKV-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF-EILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~~-h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~s 158 (513)
+.+ |...|.+++|+ ...+.+|+.|+.|..+|++..+ ... .+.+|...|..+.|++|++++|+
T Consensus 255 ~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~--------------~~~~~~~~H~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ--------------HVVSTLQGHRQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch--------------hhhhhhhcccceeeeeEECCCCCeecc
Confidence 887 99999999997 6788999999999999998733 222 37789999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC-CCEEEEc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES-SNFLIYA 237 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~-g~~li~~ 237 (513)
|+.|+.+.|||..+.+.+..+.+|..++. .++|+|- ...|++|
T Consensus 319 GgnDN~~~Iwd~~~~~p~~~~~~H~aAVK------------------------------------A~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLSPEPKFTFTEHTAAVK------------------------------------ALAWCPWQSGLLATG 362 (484)
T ss_pred CCCccceEeccCCCccccEEEeccceeee------------------------------------EeeeCCCccCceEEc
Confidence 99999999999988888888877765543 4456553 4466665
Q ss_pred c--cc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 238 T--LL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 238 s--~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
. .+ -|++||..+|..+..+-... .+..+..-+ ....++..-|+.++.|-|
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk------------------------~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDTGS---QVCSLIWSK------------------------KYKELLSTHGYSENQITL 415 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccccCC---ceeeEEEcC------------------------CCCEEEEecCCCCCcEEE
Confidence 3 33 49999999999988773222 222222211 134567777888888888
Q ss_pred EecCC
Q 010302 315 FSRRE 319 (513)
Q Consensus 315 ~~~~~ 319 (513)
|.-..
T Consensus 416 w~~ps 420 (484)
T KOG0305|consen 416 WKYPS 420 (484)
T ss_pred Eeccc
Confidence 86554
No 134
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=1.4e-17 Score=158.36 Aligned_cols=244 Identities=15% Similarity=0.130 Sum_probs=185.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCcee-EEE-------------Ec--CCCCCcEEEEEEcCCCcceEEEEeCCCCe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMM-LMI-------------RL--PFIPGAVEWVYKQGDVKAGLAISDRNSSF 64 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~-~~~-------------~l--~~~~~~v~~v~~s~~~~~~~l~s~~~d~~ 64 (513)
|+++||+++..+++.|++|.=|++.+++.. ..+ +. ..|...+.+++.++++. ++++|+.|..
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--ylatgg~d~~ 225 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--YLATGGRDRH 225 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--EEEecCCCce
Confidence 578999999999999999999999987633 111 11 15667889999999999 9999999999
Q ss_pred EEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 65 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
|.||+.+ +.+.++.+.+|.+.|.+++|-.....+++++.|+++++|+++.. ..+.++.+|.+.|
T Consensus 226 v~Iw~~~--t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--------------s~vetlyGHqd~v 289 (479)
T KOG0299|consen 226 VQIWDCD--TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--------------SYVETLYGHQDGV 289 (479)
T ss_pred EEEecCc--ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--------------HHHHHHhCCccce
Confidence 9999998 99999999999999999999988889999999999999998763 3367788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCc
Q 010302 145 SAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSN 224 (513)
Q Consensus 145 ~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~ 224 (513)
.++....-++.+.+|+.|+++++|++..... .++.++ ...+.+
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~------------------------------------~~sidc 332 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGG------------------------------------EGSIDC 332 (479)
T ss_pred eeechhcccceEEeccccceeEEEeccccce-eeeeCC------------------------------------CCCeee
Confidence 9999988888888888999999999844222 122221 123457
Q ss_pred eEEcCCCCEEEEccccceEEEEcccCcEEEEeCCCCc---cchhheeccccCCcCCcceeeeeccccccccCCCCCCCCe
Q 010302 225 AIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVEN---NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT 301 (513)
Q Consensus 225 i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 301 (513)
++|=.+.+|+.-+....|.+|++.+.+.+.+..-..+ ..+.++.- .=+..+.. -+..-
T Consensus 333 v~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~--------~Witsla~-----------i~~sd 393 (479)
T KOG0299|consen 333 VAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN--------FWITSLAV-----------IPGSD 393 (479)
T ss_pred EEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccc--------cceeeeEe-----------cccCc
Confidence 7777676665544444599999999999988743221 00101100 01112211 26677
Q ss_pred EEEeeecCceEEEEecC
Q 010302 302 LLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 302 l~~s~~~~~~i~i~~~~ 318 (513)
|+|||+.++.+.+|--.
T Consensus 394 L~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 394 LLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEEecCCCCceEEEEec
Confidence 99999999999999544
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=137.61 Aligned_cols=223 Identities=16% Similarity=0.146 Sum_probs=168.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC------C------c-eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN------Y------D-MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHI 67 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~------~------~-~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~i 67 (513)
|+|.|.|.+.|.||..++.+|-.... + . .+...+-+.|.+.+.+.+|+|+++ ++++|++|++|++
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liatgsndk~ik~ 115 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIATGSNDKTIKV 115 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEecCCCceEEE
Confidence 58999999999999999999864321 1 0 122223345788999999999999 9999999999999
Q ss_pred EecCCCCCcc---eEEeecCCCCeEEEEEcCC----CCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCcccccccc
Q 010302 68 YDARADSNEP---LISKKVHMGPVKVMRYNPV----FDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 139 (513)
Q Consensus 68 wd~~~~~~~~---i~~~~~h~~~V~~l~~sp~----~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (513)
.-.+.++.+. -..+..|.+.|..++|-.+ +..|++++ .|..|++-|... ++..+.+.+
T Consensus 116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~--------------g~~~~a~sg 181 (350)
T KOG0641|consen 116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR--------------GQGFHALSG 181 (350)
T ss_pred EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC--------------CCcceeecC
Confidence 8776433322 2345689999999999643 45677766 455666666655 667888999
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 140 SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
|.+.|.++ ++-+|-.+++|+.|.+||+||++-..++.+++.... .. . -+.
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~--------~~------------------g---les 231 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH--------DG------------------G---LES 231 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc--------CC------------------C---ccc
Confidence 99998876 344889999999999999999999888888764110 00 0 011
Q ss_pred CCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheec
Q 010302 220 APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIA 269 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~ 269 (513)
..+..++.||+|++|+++-.+. .-++|+..|+.++.+-.|...+|.++++
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs 282 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS 282 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC
Confidence 3456889999999999997654 7789999999999998777677877765
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.2e-19 Score=178.80 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=146.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|.|+++..+|++|+.||+|++||++..+.++. |.+|...+..+.|+|.+. +.++++.|..+++||.+ ...+.+.
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrt--Ltgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~R--k~Gc~~~ 149 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRT--LTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIR--KKGCSHT 149 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhh--hhccccCcceeeeccceE--Eeccccccccceehhhh--ccCceee
Confidence 46788889999999999999999998877665 448888999999999998 78999999999999998 7789999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|.++.|+|+|++++++++|.+++|||...+ +.+.++..|.+.+..+.|+|..-.+++||
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag--------------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs 215 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG--------------KLSKEFKSHEGKVQSLEFHPLEVLLAPGS 215 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeeccccc--------------ccccccccccccccccccCchhhhhccCC
Confidence 9999999999999999999999999999999999874 45778889999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEeccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~ 182 (513)
.|+++++||+++-+.+...+..
T Consensus 216 ~d~tv~f~dletfe~I~s~~~~ 237 (825)
T KOG0267|consen 216 SDRTVRFWDLETFEVISSGKPE 237 (825)
T ss_pred CCceeeeeccceeEEeeccCCc
Confidence 9999999999988887766543
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=1.4e-16 Score=155.07 Aligned_cols=242 Identities=15% Similarity=0.155 Sum_probs=162.9
Q ss_pred CeEecCCCEE-EEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLC-CSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~l-as~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|+|+|+.+ ++++.|+.|++||..+++....+. .+ ..+..+.++++++. +++++..++.+++||++ +.+.+.
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~--~~~~~~ 109 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SG-PDPELFALHPNGKI-LYIANEDDNLVTVIDIE--TRKVLA 109 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CC-CCccEEEECCCCCE-EEEEcCCCCeEEEEECC--CCeEEe
Confidence 4789999876 566789999999999887765543 22 23567788988873 45566678999999997 666666
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCC-cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKG-IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
.+..+ ..+.+++|+|+++++++++.++ .+.+||.++.+. ..... ....+.+++|+|+|++|+.
T Consensus 110 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--------------~~~~~-~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 110 EIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--------------VDNVL-VDQRPRFAEFTADGKELWV 173 (300)
T ss_pred EeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--------------EEEEE-cCCCccEEEECCCCCEEEE
Confidence 66532 3468899999999999888765 466778766321 11111 2234578999999998865
Q ss_pred Ee-CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 159 TS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 159 ~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
++ .++.|++||+++++.+..+..+.... .........++|+++|++++.+
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGV-----------------------------HPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeeccccc-----------------------------ccccCCccceEECCCCCEEEEE
Confidence 44 69999999999998877664211000 0001123467899999975543
Q ss_pred --cccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 010302 238 --TLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 315 (513)
Q Consensus 238 --s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~ 315 (513)
....+.+||..+++++..+.... . ...+ .+.+....|++++..++.|.+|
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~-~--~~~~-------------------------~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQ-R--VWQL-------------------------AFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCC-C--cceE-------------------------EECCCCCEEEEEcCCCCeEEEE
Confidence 34569999999998876653211 1 1111 1223344555556779999999
Q ss_pred ecCCCC
Q 010302 316 SRREPE 321 (513)
Q Consensus 316 ~~~~~~ 321 (513)
..+..+
T Consensus 277 d~~~~~ 282 (300)
T TIGR03866 277 DVAALK 282 (300)
T ss_pred ECCCCc
Confidence 877543
No 138
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.4e-17 Score=147.70 Aligned_cols=263 Identities=13% Similarity=0.132 Sum_probs=167.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-----
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD----- 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~----- 73 (513)
+.|.+-|+++|+||.|.+|+|||... +.-...-....|.+.+..+.|.+..-..++++++.|+++.||.-...
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 46888999999999999999999653 33344445568999999999987655559999999999999986311
Q ss_pred --CCcceEEeecCCCCeEEEEEcC--CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeec--CCccccccccCCcceEEE
Q 010302 74 --SNEPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK--SDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 74 --~~~~i~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~v 147 (513)
......++...+..|+.+.|.| -|-.+++++.||++|||+.... ...-.|... ....+.....+.....|+
T Consensus 99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp---~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cv 175 (361)
T KOG2445|consen 99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP---MNLSQWTLQHEIQNVIDPPGKNKQPCFCV 175 (361)
T ss_pred cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc---cccccchhhhhhhhccCCcccccCcceEE
Confidence 1233445667889999999999 4678899999999999965331 000011111 011111222467788999
Q ss_pred EEcCC---CCEEEEEeCC-----CcEEEEEcCC-C-eEE--EEecccHHHHHHHhcCCCCccccccccccceeeeeeecc
Q 010302 148 EVSPD---GKQFSITSPD-----RRIRVFWFRT-G-KLR--RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 215 (513)
Q Consensus 148 ~~spd---g~~l~s~s~D-----~~I~iwd~~t-g-~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~ 215 (513)
.|+|. ..+||.|+.+ +.+.||.... + +.. ..+.++...+
T Consensus 176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI----------------------------- 226 (361)
T KOG2445|consen 176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI----------------------------- 226 (361)
T ss_pred eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc-----------------------------
Confidence 99984 4588888865 5788887654 2 222 2233333333
Q ss_pred ccCCCCCCceEEcC----CCCEEEEccccceEEEEcccCcEEEEeC------CCCccchhheeccccCCcCCcceeeeec
Q 010302 216 KTETAPPSNAIFDE----SSNFLIYATLLGIKIVNLHTNKVSRILG------KVENNDRFLRIALYQGDRSSKKVRKIPA 285 (513)
Q Consensus 216 ~~~~~~~~~i~fd~----~g~~li~~s~~gi~v~d~~t~~~v~~~g------~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 285 (513)
..++|.| +-+.|+.++.+||+||++..-.- .+.. .......+..++.|.++..
T Consensus 227 -------~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s-~i~~ee~~~~~~~~~l~v~~vs~~~~H~~--------- 289 (361)
T KOG2445|consen 227 -------RDISWAPNIGRSYHLLAVATKDGVRIFKVKVARS-AIEEEEVLAPDLMTDLPVEKVSELDDHNG--------- 289 (361)
T ss_pred -------eeeeeccccCCceeeEEEeecCcEEEEEEeeccc-hhhhhcccCCCCccccceEEeeeccCCCC---------
Confidence 3444544 23578889999999999964221 0110 0001111222222222110
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 286 AAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 286 ~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
..=...|| -.+++++|.++||.+++|-
T Consensus 290 ---~VWrv~wN-mtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 290 ---EVWRVRWN-MTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ---ceEEEEEe-eeeeEEeecCCCceeeehh
Confidence 12233443 5688999999999999994
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2e-17 Score=157.69 Aligned_cols=248 Identities=14% Similarity=0.188 Sum_probs=183.9
Q ss_pred CCEEEEEe-CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 7 GLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 7 g~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
+.+++++. .-..+.+|.+...+... .-...|+.+.++..+|.+. +++.|...+.|++|.+. ++..+..+.+|-
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWels--sG~LL~v~~aHY 123 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGY--FLLAGTISGNLYLWELS--SGILLNVLSAHY 123 (476)
T ss_pred hhheeeecccCccccccccCchhhhh--hhcccccceeeeecCCCce--EEEeecccCcEEEEEec--cccHHHHHHhhc
Confidence 35666665 45578999987544333 1123568899999999988 88888889999999998 999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC--CEEEEEeCCC
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG--KQFSITSPDR 163 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg--~~l~s~s~D~ 163 (513)
..|+|+.|+-||.+|+|||.||.|.+|++.+.--+ .+..+..+++.+..|.-.|+++...+.| .+++|+|.|.
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a-----~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA-----DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc-----ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 99999999999999999999999999976431110 0111356678888999999999987754 5899999999
Q ss_pred cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-e
Q 010302 164 RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-I 242 (513)
Q Consensus 164 ~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i 242 (513)
++++||+..|.++.++.- ...+.+++.||.++.+..|+..| |
T Consensus 199 t~k~wdlS~g~LLlti~f-------------------------------------p~si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITF-------------------------------------PSSIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred eEEEEEeccceeeEEEec-------------------------------------CCcceeEEEcccccEEEecCCcceE
Confidence 999999999998876631 12456889999999999998887 5
Q ss_pred EEEEcccCc--EE--EEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 243 KIVNLHTNK--VS--RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 243 ~v~d~~t~~--~v--~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
.+.++.+-. -- ..-+.++ .-.++-.+.|+...+.+..++. ..|+.|++||++|+.+-||.
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~~---~~t~~~~~~Gh~~~~~ITcLai-----------s~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRHE---ENTQINVLVGHENESAITCLAI-----------STDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred EeeehhcCCccccccccccccc---ccceeeeeccccCCcceeEEEE-----------ecCccEEEeeCCCCCEEEEe
Confidence 555554221 11 1111121 1123344555555445555555 38999999999999999994
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=5.1e-18 Score=161.16 Aligned_cols=254 Identities=17% Similarity=0.171 Sum_probs=177.3
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|.|+|. -..+.+.|.||+|++-|+++......+.++......+.+.++.+.. .++.+..-|...+||++. .+....
T Consensus 240 l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~-~~s~~~ 316 (498)
T KOG4328|consen 240 LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRT-DGSEYE 316 (498)
T ss_pred eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeec-CCccch
Confidence 467874 4678889999999999998765444444433334555666666655 555555656899999983 233455
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 80 SKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
.+..|...|.+++++| ...+|+++|.|++++|||++.... ...++.....|...|.++.|||++-.|+|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~----------K~sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG----------KASPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC----------CCCcceecccccceeeeeEEcCCCCceEe
Confidence 6667889999999999 566789999999999999987442 01123445569999999999999888999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
.|.|..|||||.. ++...++....|. .+...+|- .....+.|+|+-++++.+.
T Consensus 387 T~~D~~IRv~dss---~~sa~~~p~~~I~------------Hn~~t~Rw------------lT~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 387 TCQDNEIRVFDSS---CISAKDEPLGTIP------------HNNRTGRW------------LTPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred eccCCceEEeecc---cccccCCccceee------------ccCccccc------------ccchhheeCCCccEEEEec
Confidence 9999999999974 2222222111100 00111110 1223568999999999987
Q ss_pred cc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 239 LL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 239 ~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
+. .|-|+|...++.+..++..+ ..++ ....++++.+-.++|-|..-+.||||++
T Consensus 440 ~~r~IDv~~~~~~q~v~el~~P~------~~tI-------------------~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 440 YPRPIDVFDGNGGQMVCELHDPE------SSTI-------------------PSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cCcceeEEcCCCCEEeeeccCcc------cccc-------------------ccceeecccccceeccCCccceEEEEec
Confidence 65 49999999999887775443 1111 2234566888889999999999999987
Q ss_pred CC
Q 010302 318 RE 319 (513)
Q Consensus 318 ~~ 319 (513)
+.
T Consensus 495 k~ 496 (498)
T KOG4328|consen 495 KK 496 (498)
T ss_pred CC
Confidence 64
No 141
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.78 E-value=7.7e-18 Score=158.00 Aligned_cols=196 Identities=18% Similarity=0.141 Sum_probs=143.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc----------------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK---------------------------- 52 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~---------------------------- 52 (513)
++|.++++++++++.|+.+++|++...+....+. +|...++.+.|.....
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~ 302 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS--GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG 302 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhc--ccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc
Confidence 4688999999999999999999998777666544 5666666665543322
Q ss_pred ---------ceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcc
Q 010302 53 ---------AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE 123 (513)
Q Consensus 53 ---------~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 123 (513)
...++||..|++|++||.+ +..+.+....+. .|+++..++++..+.+++.|.++.+.|+++.++-..
T Consensus 303 S~cnDI~~~~~~~~SgH~DkkvRfwD~R--s~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~- 378 (459)
T KOG0288|consen 303 SQCNDIVCSISDVISGHFDKKVRFWDIR--SADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT- 378 (459)
T ss_pred ccccceEecceeeeecccccceEEEecc--CCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-
Confidence 1133455566666666666 556666665554 899999999999999999999999999998654100
Q ss_pred eeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccc
Q 010302 124 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 203 (513)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 203 (513)
|+ ......+| -.+.++|||++.|+++||.||.|+||++.++++.+.+....
T Consensus 379 --~s-----A~g~k~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-------------------- 429 (459)
T KOG0288|consen 379 --FS-----AEGFKCAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-------------------- 429 (459)
T ss_pred --ee-----cccccccc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC--------------------
Confidence 00 01111122 37889999999999999999999999999999988775311
Q ss_pred ccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEE
Q 010302 204 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIV 245 (513)
Q Consensus 204 ~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~ 245 (513)
.+..+++++|+++|..|+.++..+ +.+|
T Consensus 430 --------------s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 430 --------------SNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --------------CCcceEEEEEcCCCchhhcccCCcceEec
Confidence 122467899999999999887654 5555
No 142
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=7.9e-18 Score=160.03 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=164.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++.|+||+|||+|+.|..|.||+..+.+.+.. +..|.+.|..++|-.... -+.+++.|..+++|++. ....+.+
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~--~~s~vet 281 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSID--QLSYVET 281 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCcc--ceeeeecCCceEEEehh--HhHHHHH
Confidence 57899999999999999999999998887766 458999999999987766 67788899999999998 7788888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|++.|.+|.-....+.+..|+.|+++++|++.. +....+.+|.+.+-|++|- +...|++||
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e---------------esqlifrg~~~sidcv~~I-n~~HfvsGS 345 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE---------------ESQLIFRGGEGSIDCVAFI-NDEHFVSGS 345 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEeccc---------------cceeeeeCCCCCeeeEEEe-cccceeecc
Confidence 899999999999888888888888999999999843 2334566788889999996 555779999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.+|.|.+|++.+.+.+.+..........+ +.. ..+...++++.-+...++++++..
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~----------~~~--------------~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPEL----------DPV--------------NGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCc----------ccc--------------ccccceeeeEecccCceEEecCCC
Confidence 99999999999999888765422221111 000 001245678888999999999977
Q ss_pred c-eEEEEcccC
Q 010302 241 G-IKIVNLHTN 250 (513)
Q Consensus 241 g-i~v~d~~t~ 250 (513)
| |++|-+..|
T Consensus 402 G~vrLW~i~~g 412 (479)
T KOG0299|consen 402 GCVRLWKIEDG 412 (479)
T ss_pred CceEEEEecCC
Confidence 7 999999877
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=161.62 Aligned_cols=278 Identities=14% Similarity=0.170 Sum_probs=197.1
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCC
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP 87 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~ 87 (513)
+.++.|+.+|.+.||++++++.+..+. .+...|.++.-+|--. +++.|..+|+|.+++++ ..+.+.+++...++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~--~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK--~dkil~sFk~d~g~ 246 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQ--EFFSRITAIEQSPALD--VVAIGLENGTVIIFNLK--FDKILMSFKQDWGR 246 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEec--ccccceeEeccCCcce--EEEEeccCceEEEEEcc--cCcEEEEEEccccc
Confidence 457889999999999999999988866 6678899998888777 99999999999999998 88999999866799
Q ss_pred eEEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCc-------------------------------cee----------
Q 010302 88 VKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPES-------------------------------EVS---------- 125 (513)
Q Consensus 88 V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~-------------------------------~~~---------- 125 (513)
|++++|..||+.+ ++++..|.+-+||++..++... .+.
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 9999999998865 6677779999999864433100 000
Q ss_pred --------------------------------------------------------------------------------
Q 010302 126 -------------------------------------------------------------------------------- 125 (513)
Q Consensus 126 -------------------------------------------------------------------------------- 125 (513)
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence
Q ss_pred --------------------------------------------------------------------eeecCCcccccc
Q 010302 126 --------------------------------------------------------------------FRLKSDTNLFEI 137 (513)
Q Consensus 126 --------------------------------------------------------------------~~~~~~~~~~~~ 137 (513)
|.++++-....+
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence 111133333333
Q ss_pred ---ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceee-----
Q 010302 138 ---LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA----- 209 (513)
Q Consensus 138 ---~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~----- 209 (513)
..|+..|.+++...-++.+++++.+|.+.+||+....++..++-......-+......++.+...++.-++.
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 357888999999777888999999999999999998877766532211000011111112222222222211
Q ss_pred -eeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccc
Q 010302 210 -VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 287 (513)
Q Consensus 210 -~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
+-|++. .....++.++|+|+|++|+++++++ |++||+.++.++-.+.-+. .... +.|
T Consensus 567 kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~-~~~s-----------------ls~-- 625 (910)
T KOG1539|consen 567 KVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS-PCTS-----------------LSF-- 625 (910)
T ss_pred hhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC-ccee-----------------eEE--
Confidence 112222 2235678899999999999999875 9999999999998887655 2111 222
Q ss_pred cccccCCCCCCCCeEEEeeecC-ceEEEEecCCCC
Q 010302 288 ANANESKEPFSDPTLLCCAFKR-HRIYLFSRREPE 321 (513)
Q Consensus 288 ~~~~~~~~~~~d~~l~~s~~~~-~~i~i~~~~~~~ 321 (513)
.|++-++||...+ .-||+|+++.-.
T Consensus 626 ---------SPngD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 626 ---------SPNGDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred ---------CCCCCEEEEEEecCceEEEEEchhHh
Confidence 2777778888877 789999998743
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.4e-17 Score=157.70 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=165.3
Q ss_pred CCCEEEEEeCCCcEEEEEccCCce-eEEEE------------------cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEE
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDM-MLMIR------------------LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVH 66 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~-~~~~~------------------l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~ 66 (513)
-|+|+|.|..|..|.|||+.-.+. ...+. ..+|...+..+.|...-+. +|+||+.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 378999999999999999853211 11111 1245555666666655443 999999999999
Q ss_pred EEecCCCCCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceE
Q 010302 67 IYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 145 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (513)
+||+. ++++..++..|...|.++.|+| ....|++|+.|+++.+.|.+... .........+.|-
T Consensus 270 lWD~~--~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--------------~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 270 LWDVD--TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--------------NSGKEWKFDGEVE 333 (463)
T ss_pred EEEcC--CCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--------------ccCceEEeccceE
Confidence 99998 8999999999999999999999 57889999999999999998621 1222333456788
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCC
Q 010302 146 AIEVSPDGK-QFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 146 ~v~~spdg~-~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
.++|.|... .++++..||+++-+|+|. ++++.++..|...|.
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS------------------------------------ 377 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS------------------------------------ 377 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc------------------------------------
Confidence 999999654 666777899999999998 588888876655444
Q ss_pred ceEEcCCCC-EEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCe
Q 010302 224 NAIFDESSN-FLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT 301 (513)
Q Consensus 224 ~i~fd~~g~-~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 301 (513)
.++++..-. ++++++.+ .+++|++.-.+.-.+.++...-. ++..|+- .+..+.
T Consensus 378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~---rl~c~~~----------------------~~~~a~ 432 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLG---RLHCFAL----------------------DPDVAF 432 (463)
T ss_pred eEEecCCCCcceeeccccceEEEEeecCCCCccccccccccc---ceeeccc----------------------CCCcce
Confidence 444444333 44555544 48999986544322222211111 1222221 246778
Q ss_pred EEEeeecCceEEEEecC
Q 010302 302 LLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 302 l~~s~~~~~~i~i~~~~ 318 (513)
+++.|+.++.+.||...
T Consensus 433 ~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 433 TLAFGGEKAVLRVWDIF 449 (463)
T ss_pred EEEecCccceEEEeecc
Confidence 89999999999999654
No 145
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.1e-17 Score=150.06 Aligned_cols=229 Identities=14% Similarity=0.211 Sum_probs=176.9
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec------CCC-------
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA------RAD------- 73 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~------~~~------- 73 (513)
...+.++|.|.+-+||.++++.++.... +|.+.++++.|++.+. ++++++.|++.+||.. ...
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~--L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS 235 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFHNSGL--LLLTASGDETAHIWKAAVNWEVPSNNAPSDHS 235 (481)
T ss_pred CcceeecccccceeEEeeccccceeeec--ccccceeeEEeccccc--eEEEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence 3468889999999999999999887765 9999999999999877 9999999999999961 100
Q ss_pred ---------------------C----CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeee
Q 010302 74 ---------------------S----NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 128 (513)
Q Consensus 74 ---------------------~----~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 128 (513)
+ ..++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+++
T Consensus 236 sEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt------------ 303 (481)
T KOG0300|consen 236 SEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET------------ 303 (481)
T ss_pred chhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc------------
Confidence 0 134566789999999999999999999999999999999988
Q ss_pred cCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccce
Q 010302 129 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 207 (513)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r 207 (513)
++.+..+.+|....+.++-+|..+++++.|.|.+.|+||++. -..+..|.+|.+
T Consensus 304 --ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd----------------------- 358 (481)
T KOG0300|consen 304 --GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD----------------------- 358 (481)
T ss_pred --CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-----------------------
Confidence 566888999999999999999999999999999999999984 233445555443
Q ss_pred eeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEccc-CcEEEEeCCCCccchhheeccccCCcCCcceeeeec
Q 010302 208 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 285 (513)
Q Consensus 208 ~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t-~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 285 (513)
.++++.|..+.+ +++++++ .|||||+.+ ...+.++..+... ..+++.
T Consensus 359 -------------tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~---NRvavs-------------- 407 (481)
T KOG0300|consen 359 -------------TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA---NRVAVS-------------- 407 (481)
T ss_pred -------------ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCcc---ceeEee--------------
Confidence 345677876655 5556554 699999965 4455666544421 123332
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 286 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 286 ~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
....++|---+++.+++|....
T Consensus 408 ------------~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 408 ------------KGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred ------------cCCceEEeccCCceEEEEecCC
Confidence 2234577777888899996543
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.3e-17 Score=158.82 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=172.0
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC-------CCC
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR-------ADS 74 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~-------~~~ 74 (513)
+-+|+|.+|+.|...+.+++|.+.+|.++..+ ..|...+.++.|+.++. ++++++.||.|.+|++- ..+
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCC
Confidence 45789999998889999999999999998876 48999999999999999 99999999999999862 124
Q ss_pred CcceEEeecCCCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.++++.+..|.-+|+++...+. ..+++|+|.|.++++||+..+. .+..+ .....+.+++.+|-
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--------------LLlti-~fp~si~av~lDpa 228 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--------------LLLTI-TFPSSIKAVALDPA 228 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--------------eeEEE-ecCCcceeEEEccc
Confidence 6788999999999999998764 4689999999999999997743 23332 24457899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
++.+..|+.+|.|.+.++..-.-... +. . ...++..... .+..+ .......+++++.+-||.
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~-----~v-~------~k~~~~~~t~--~~~~~----Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSA-----GV-N------QKGRHEENTQ--INVLV----GHENESAITCLAISTDGT 290 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccc-----cc-c------ccccccccce--eeeec----cccCCcceeEEEEecCcc
Confidence 99999999999999988754221000 00 0 0000000000 00000 011124678999999999
Q ss_pred EEEEccccc-eEEEEcccCcEEEEeCCCCccchhhee
Q 010302 233 FLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRI 268 (513)
Q Consensus 233 ~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~ 268 (513)
.|++|+.+| ++|||+.+.|+++++-...+.+..+.+
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 999999887 999999999999998643334444444
No 147
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=7.4e-17 Score=146.69 Aligned_cols=224 Identities=17% Similarity=0.241 Sum_probs=174.5
Q ss_pred EEEEEeCCCcEEEEEccC----------CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 9 LCCSISNDKSVKIYDVVN----------YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 9 ~las~s~D~~v~iwd~~~----------~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
.|+.|+....|.-+++.- ..+...+....|.+.+.+++.+.- +++||+.|.+|+|||++ ....+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~----~~aSGssDetI~IYDm~--k~~ql 76 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGP----YVASGSSDETIHIYDMR--KRKQL 76 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecce----eEeccCCCCcEEEEecc--chhhh
Confidence 366777777776666531 223345556788889999887643 99999999999999998 77888
Q ss_pred EEeecCCCCeEEEEEcCCCC--EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFD--TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
..+-.|.+.|+++.|.+... .|++|+.||.|.+|+.... ..+..++.|++.|+.++++|.|+.-
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--------------~~~~slK~H~~~Vt~lsiHPS~KLA 142 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--------------ELLKSLKAHKGQVTDLSIHPSGKLA 142 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--------------EEeeeecccccccceeEecCCCceE
Confidence 88889999999999998654 8999999999999998763 4588899999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
++.+.|+.++.||+-+|+.-..+.- ....+.+.|++.|.+.+.
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L-------------------------------------~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNL-------------------------------------KNKATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEcCCceeeeehhhcCccceeecc-------------------------------------CCcceeeEEcCCCCEEEE
Confidence 9999999999999999886554421 012245889999998888
Q ss_pred ccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 237 ATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 237 ~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
....+|-||.+.+-.+.+.+.. +.|.+.+. +-+...+.+|.++..|..|.
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~---------------------------~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIEN---PKRILCAT---------------------------FLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred EeccEEEEEecccHhHhhhhhc---cccceeee---------------------------ecCCceEEEecCCceEEEec
Confidence 8888899999888776665532 23333333 23445688899999999996
Q ss_pred cCC
Q 010302 317 RRE 319 (513)
Q Consensus 317 ~~~ 319 (513)
...
T Consensus 236 ~ds 238 (362)
T KOG0294|consen 236 TDS 238 (362)
T ss_pred cCC
Confidence 553
No 148
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.76 E-value=1.3e-17 Score=160.39 Aligned_cols=164 Identities=16% Similarity=0.111 Sum_probs=125.9
Q ss_pred eEecCC-CEEEEEeCCCcEEEEEccCCc-eeEEEEcC---CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 2 QVSVDG-LLCCSISNDKSVKIYDVVNYD-MMLMIRLP---FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 2 ~~s~dg-~~las~s~D~~v~iwd~~~~~-~~~~~~l~---~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
+|+|+. +.++||+.|+++||||+.+.+ ...++... +..-.+..+.|++++. .+++|..||.|.+|+.....-.
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~ 352 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVR 352 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc--hhhhcccCCceeeeecCCcccc
Confidence 588864 568899999999999998654 22333321 2233578899999999 7999999999999997533344
Q ss_pred ceEEee-cCCC--CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC--cceEEEEEcC
Q 010302 77 PLISKK-VHMG--PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK--TTVSAIEVSP 151 (513)
Q Consensus 77 ~i~~~~-~h~~--~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp 151 (513)
+...+. .|.. .|+||+||++|++|+|-+.|+++++||++..+ +++....+-. -.-+.++|||
T Consensus 353 p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-------------kpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 353 PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-------------KPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-------------cchhhhcCCCccCCCCccccCC
Confidence 444443 7877 89999999999999999999999999999865 3444444322 2346799999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCCCeEEEEec
Q 010302 152 DGKQFSITSP------DRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 152 dg~~l~s~s~------D~~I~iwd~~tg~~~~~~~ 180 (513)
+.++|++|.. .+++.+||..+...++.++
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 9999999873 4789999998888877765
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.7e-16 Score=156.24 Aligned_cols=214 Identities=14% Similarity=0.105 Sum_probs=159.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC-CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF-IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~-~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
||||.+.+.||.+-.||.|-||++...=. ....+.+ ..+++..++|++.+ -|+|.+.+|.|.-||+. +.++.+
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~-~~~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~--~lk~~~ 104 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWF-LEPVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH--TLKQKY 104 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCce-eeEEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc--cCceeE
Confidence 58899888999999999999999987433 2333333 45689999999444 57888889999999998 889999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+....+.|++++.+|.+..++.|+.||.+..++.....+ +--..+...++.+.+++|+|++..+++|
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I------------~~~r~l~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI------------TYKRSLMRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE------------EEEeecccccceEEEEEecCCccEEEec
Confidence 9999999999999999999999999999887777755332 1112344467899999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
|.||.|++||..++..++..+.. ++... +....-+.++.|=.++..+.-.|.
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~----------------~d~l~------------k~~~~iVWSv~~Lrd~tI~sgDS~ 224 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQ----------------LDRLS------------KREPTIVWSVLFLRDSTIASGDSA 224 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeec----------------ccccc------------cCCceEEEEEEEeecCcEEEecCC
Confidence 99999999999999887744321 11110 001112234455555554444455
Q ss_pred cceEEEEcccCcEEEEeCCCC
Q 010302 240 LGIKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 240 ~gi~v~d~~t~~~v~~~g~~~ 260 (513)
+.|++||...|.+++...-++
T Consensus 225 G~V~FWd~~~gTLiqS~~~h~ 245 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLIQSHSCHD 245 (691)
T ss_pred ceEEEEcccCcchhhhhhhhh
Confidence 569999999998887765544
No 150
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2e-17 Score=163.32 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=139.0
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEE-cCCCcceEEEEeCCCCeEEEEecCCCCCcceE--
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYK-QGDVKAGLAISDRNSSFVHIYDARADSNEPLI-- 79 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~-s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~-- 79 (513)
...+|+-|+|||.|-+|++|+...........+..|..-|.+++. .++.. +++||+-|+.|.+||++.+..+.+.
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~ 158 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASF 158 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhc
Confidence 345788999999999999999986643333445578888888888 45544 9999999999999999833222222
Q ss_pred ------Eee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 80 ------SKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 80 ------~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.+. ++...|.+++-++.|..|++|+..+.+++||.++ .+.+..+.+|...|.++..++|
T Consensus 159 n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt--------------~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 159 NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT--------------CKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred cccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc--------------ccceeeeeccccceEEEEEcCC
Confidence 233 8889999999999999999999999999999988 5568888999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHH
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV 185 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~ 185 (513)
|+.++++|.||+|++||+...+|+.++.-|.+.
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 999999999999999999999999988655433
No 151
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=9.8e-18 Score=160.61 Aligned_cols=204 Identities=11% Similarity=0.090 Sum_probs=162.4
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.++|||+-|++|+.-.++.|||+..-.......+....-.|..++.+||.+ +++++..||.|.|||+. +...++.+
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLh--nq~~Vrqf 547 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLH--NQTLVRQF 547 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcc--cceeeecc
Confidence 478999999999999999999998766554445554445688889999998 99999999999999998 88899999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc-c---eeee----------------------ecCCcccc
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES-E---VSFR----------------------LKSDTNLF 135 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-~---~~~~----------------------~~~~~~~~ 135 (513)
++|.+.+.||..+++|..|.+|+-|+++|.||++++..+.. . ..|+ ..++...+
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky 627 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY 627 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce
Confidence 99999999999999999999999999999999987654422 0 0011 01233345
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecc
Q 010302 136 EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 215 (513)
Q Consensus 136 ~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~ 215 (513)
.+.-|.+-|.++.|++.|+++++.+.|+.+..|....|..+.+..+.
T Consensus 628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~--------------------------------- 674 (705)
T KOG0639|consen 628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES--------------------------------- 674 (705)
T ss_pred eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---------------------------------
Confidence 56668889999999999999999999999999998888876655432
Q ss_pred ccCCCCCCceEEcCCCCEEEEcccc-ceEEEE
Q 010302 216 KTETAPPSNAIFDESSNFLIYATLL-GIKIVN 246 (513)
Q Consensus 216 ~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d 246 (513)
.++.+.-.+.+.+||++|+.+ ...||.
T Consensus 675 ----SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 675 ----SSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ----CcceeeeeccCceEEEecCCCcceEEEE
Confidence 234455566678999999866 344443
No 152
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=5.6e-18 Score=156.49 Aligned_cols=257 Identities=11% Similarity=0.133 Sum_probs=175.7
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCC
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP 87 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~ 87 (513)
..+|||+.||.|+|||+.+..+...+. +|.+.|..+++.. . .+++++.|++|+.|-+. +.+++++.+ ...
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~--AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~wk~~---~~p~~tilg-~s~ 149 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFK--AHEGLVRGICVTQ--T--SFFTVGDDKTVKQWKID---GPPLHTILG-KSV 149 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheee--cccCceeeEEecc--c--ceEEecCCcceeeeecc---CCcceeeec-ccc
Confidence 468999999999999999877766655 8999999999877 2 78889999999999985 457777754 356
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-EEEEEeCCCcEE
Q 010302 88 VKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIR 166 (513)
Q Consensus 88 V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~s~s~D~~I~ 166 (513)
+..+.-+..+..++|++++ |.|||.+- ..++..+.-....+.++.|+|-.. .|++++.|+.|.
T Consensus 150 ~~gIdh~~~~~~FaTcGe~--i~IWD~~R--------------~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCGEQ--IDIWDEQR--------------DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred ccccccccccccccccCce--eeeccccc--------------CCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 6778777778889999876 88999865 456666766667899999999776 556666999999
Q ss_pred EEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceee-----eeeeccc--cCCCCCCceEEcCCCCEEEEccc
Q 010302 167 VFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA-----VEKEIEK--TETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 167 iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~-----~e~e~~~--~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
+||+++++.++.+--.... ..++|+|.....+.+.+...... +++.+.. .....+..+.|+|.|+-++++++
T Consensus 214 LyD~R~~~Pl~KVi~~mRT-N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTMRT-NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred EEecccCCccceeeeeccc-cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 9999998887755332221 23455553211111111111100 0111111 11234567899999999999998
Q ss_pred cc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 240 LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 240 ~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+. |+|+....+..--++- .-|...+ ..++| ..|...+.||++|+.|++|--.
T Consensus 293 DksIRIf~~~~~~SRdiYh----tkRMq~V----------------------~~Vk~-S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDIYH----TKRMQHV----------------------FCVKY-SMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cceEEEeecCCCcchhhhh----Hhhhhee----------------------eEEEE-eccccEEEecCCCcceeeeecc
Confidence 74 8888887654322221 1111111 11223 2788899999999999999644
No 153
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=1.6e-17 Score=159.22 Aligned_cols=232 Identities=13% Similarity=0.090 Sum_probs=161.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCC---ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNY---DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~---~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
.+|...+++.||+ .|.|+|||+..- ..+..+..-....-+..+...+++. .++.|+.-.++.|||+...+....
T Consensus 426 tIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr--tLivGGeastlsiWDLAapTprik 502 (705)
T KOG0639|consen 426 TISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR--TLIVGGEASTLSIWDLAAPTPRIK 502 (705)
T ss_pred EecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc--eEEeccccceeeeeeccCCCcchh
Confidence 4677778888877 578999999742 1222222222334678888999999 778888889999999974444444
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
..+....-.+.+++.+||.+..+++..||.|.|||+++ ...+..+.+|...+.||.+++||..|-|
T Consensus 503 aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn--------------q~~VrqfqGhtDGascIdis~dGtklWT 568 (705)
T KOG0639|consen 503 AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN--------------QTLVRQFQGHTDGASCIDISKDGTKLWT 568 (705)
T ss_pred hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc--------------ceeeecccCCCCCceeEEecCCCceeec
Confidence 44544445678899999999999999999999999987 5668899999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeee----cc-ccCCCCCCceEEcCCCCE
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE----IE-KTETAPPSNAIFDESSNF 233 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e----~~-~~~~~~~~~i~fd~~g~~ 233 (513)
|+.|++||.||+++++.+...+-.. .|.++-..++..+..-+++-+..-.+... .+ .-....+-++.|.+.|++
T Consensus 569 GGlDntvRcWDlregrqlqqhdF~S-QIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQHDFSS-QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred CCCccceeehhhhhhhhhhhhhhhh-hheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCce
Confidence 9999999999999999877665432 23344444544444444433322111100 00 001123346788888888
Q ss_pred EEEccccc-eEEEEcccCc
Q 010302 234 LIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 234 li~~s~~g-i~v~d~~t~~ 251 (513)
.++...+. +..|-.--|-
T Consensus 648 fvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred eeecCchhhhhhccCcccc
Confidence 88766554 4566554443
No 154
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=3.5e-17 Score=152.81 Aligned_cols=203 Identities=16% Similarity=0.162 Sum_probs=152.9
Q ss_pred CCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-----CCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcE
Q 010302 36 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGII 109 (513)
Q Consensus 36 ~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-----~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i 109 (513)
.+|.+.+..+.|+|.... .++||++|.+|.||++... -.+++..+.+|+..|--++|+| ..+.|+|++.|.+|
T Consensus 78 ~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred cCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 468889999999998764 8999999999999998521 2366778889999999999999 56788999999999
Q ss_pred EEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHH
Q 010302 110 EYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL 189 (513)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~ 189 (513)
.+|++.+ ++.+.++. |...|++++|+.||.+|++.|.|.+|||||.++++.+..-..|.
T Consensus 157 ~iWnv~t--------------geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he------ 215 (472)
T KOG0303|consen 157 SIWNVGT--------------GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE------ 215 (472)
T ss_pred EEEeccC--------------CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc------
Confidence 9999988 45566665 99999999999999999999999999999999999876543221
Q ss_pred hcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc----cceEEEEcccCcEEEEeCCCCccchh
Q 010302 190 QRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL----LGIKIVNLHTNKVSRILGKVENNDRF 265 (513)
Q Consensus 190 ~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~----~gi~v~d~~t~~~v~~~g~~~~~~r~ 265 (513)
+....-+.|=.+|.++-+|-. ..+-+||..
T Consensus 216 -----------------------------G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~----------------- 249 (472)
T KOG0303|consen 216 -----------------------------GAKPARAIFLASGKIFTTGFSRMSERQIALWDPN----------------- 249 (472)
T ss_pred -----------------------------CCCcceeEEeccCceeeeccccccccceeccCcc-----------------
Confidence 223334556556663333321 124444443
Q ss_pred heeccccCCcCCcceeeeeccccc-cccCCCCCCCCeEEEeeecCceEEEE
Q 010302 266 LRIALYQGDRSSKKVRKIPAAAAN-ANESKEPFSDPTLLCCAFKRHRIYLF 315 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~l~~s~~~~~~i~i~ 315 (513)
+....+.--+|..|+ .+...+.+...++..+|-.|+.|+-|
T Consensus 250 ---------nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 250 ---------NLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ---------cccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 222223333455555 56667778889999999999988776
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=5e-17 Score=159.72 Aligned_cols=244 Identities=14% Similarity=0.196 Sum_probs=163.3
Q ss_pred EecCCCEEEEE--eCCCcEEEEEccCCceeEEEEcC--CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-----
Q 010302 3 VSVDGLLCCSI--SNDKSVKIYDVVNYDMMLMIRLP--FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD----- 73 (513)
Q Consensus 3 ~s~dg~~las~--s~D~~v~iwd~~~~~~~~~~~l~--~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~----- 73 (513)
|..+.++.|.- +..|.|-||+++.-..+.--.++ .....+..++|.|.... -++.+..|+.|++|.+...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~-rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDE-RLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChH-HeeecccCceEEEEEeccCCCCcc
Confidence 34455555542 45789999999752211111111 23456888999987665 5667778999999987532
Q ss_pred CCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 74 SNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
..++...+..|...|+++.|+| ..+.|++++.|-+|++||+++. .....+.+|.+.|..++||||
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~--------------~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA--------------KLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh--------------hhhheeccCcCceeEEEECCC
Confidence 2356667889999999999999 6788999999999999999884 446678899999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
|+.+|+.|.||+|++|+.++++.- .+++ .. ...
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~p-v~Eg------------------~g---------------pvg------------- 764 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQP-VYEG------------------KG---------------PVG------------- 764 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCCc-cccC------------------CC---------------Ccc-------------
Confidence 999999999999999999886541 1110 00 000
Q ss_pred EEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCC-cceeeeeccccc-cccCCCCCCCCeEEEeeecCc
Q 010302 233 FLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSS-KKVRKIPAAAAN-ANESKEPFSDPTLLCCAFKRH 310 (513)
Q Consensus 233 ~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~d~~l~~s~~~~~ 310 (513)
..|.+|.-...|+++.+.|.+..+.|-+ .+|...... .-..+..+..+. .+..+..+....||.||..|.
T Consensus 765 ------tRgARi~wacdgr~viv~Gfdk~SeRQv--~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~ 836 (1012)
T KOG1445|consen 765 ------TRGARILWACDGRIVIVVGFDKSSERQV--QMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDR 836 (1012)
T ss_pred ------CcceeEEEEecCcEEEEecccccchhhh--hhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCc
Confidence 1134444444555555555555445532 233321111 111222222222 455566678899999999999
Q ss_pred eEEEEe
Q 010302 311 RIYLFS 316 (513)
Q Consensus 311 ~i~i~~ 316 (513)
+||+|-
T Consensus 837 ~v~~yE 842 (1012)
T KOG1445|consen 837 FVNMYE 842 (1012)
T ss_pred eEEEEE
Confidence 999994
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=2.2e-17 Score=153.37 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=143.4
Q ss_pred CCCEEEEEeCCCcEEEEEccC--------------CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 6 DGLLCCSISNDKSVKIYDVVN--------------YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~--------------~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
+..+.|+-+..|.|+||++.. .+....+++..|.+.-..+.|||... ..+++|..-+.|++|...
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-GRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-cccccCccccceEeeeec
Confidence 345667778899999999852 11223345567888888999999544 368888888899999986
Q ss_pred CCCCcc-eEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEE
Q 010302 72 ADSNEP-LISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV 149 (513)
Q Consensus 72 ~~~~~~-i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (513)
.++.+. ...+.+|+..|-.++||| ....|+|||.||+|+|||++.... +.....+.|.+-|+.|.|
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------------~~~~~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------------KAAVSTKAHNSDVNVISW 310 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc------------cceeEeeccCCceeeEEc
Confidence 322211 123458999999999999 456889999999999999988532 222233779999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC---CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 150 SPDGKQFSITSPDRRIRVFWFRT---GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 150 spdg~~l~s~s~D~~I~iwd~~t---g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
+.+-.+||+|+.||+++|||+++ ++.+.+++-|... ++++.
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p------------------------------------Itsie 354 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP------------------------------------ITSIE 354 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC------------------------------------eeEEE
Confidence 99988999999999999999986 5556666655544 44555
Q ss_pred EcCC--CCEEEEccccceEEEEccc
Q 010302 227 FDES--SNFLIYATLLGIKIVNLHT 249 (513)
Q Consensus 227 fd~~--g~~li~~s~~gi~v~d~~t 249 (513)
|+|. +-+.+.+.+..|.+||+..
T Consensus 355 W~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eccccCceEEeccCCCcEEEEEeec
Confidence 6543 3345556666799999863
No 157
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=2e-17 Score=152.90 Aligned_cols=167 Identities=17% Similarity=0.238 Sum_probs=135.1
Q ss_pred CcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC
Q 010302 40 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 119 (513)
Q Consensus 40 ~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 119 (513)
..+.++.|.|.... +|++|..|+.|.+||++ +..+++.+.. ...-..|+|+|..-.|+++++|..++.+|++...
T Consensus 188 Dti~svkfNpvETs-ILas~~sDrsIvLyD~R--~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~- 262 (433)
T KOG0268|consen 188 DSISSVKFNPVETS-ILASCASDRSIVLYDLR--QASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS- 262 (433)
T ss_pred CceeEEecCCCcch-heeeeccCCceEEEecc--cCCccceeee-eccccceecCccccceeeccccccceehhhhhhc-
Confidence 45677788876654 78888899999999999 7777776642 2344679999988899999999999999998743
Q ss_pred CCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccc
Q 010302 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 199 (513)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l 199 (513)
.++....+|.+.|.++.|||.|+-+++||.|.+||||..+.+....++..
T Consensus 263 ------------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------------ 312 (433)
T KOG0268|consen 263 ------------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------------ 312 (433)
T ss_pred ------------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH------------------
Confidence 56778889999999999999999999999999999999887765433321
Q ss_pred ccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCC
Q 010302 200 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 200 ~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~ 258 (513)
..+..+.++.|+.|.+||++||+++ |++|-...-+.+..+..
T Consensus 313 -----------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~ 355 (433)
T KOG0268|consen 313 -----------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITP 355 (433)
T ss_pred -----------------hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCCh
Confidence 1123567889999999999999886 99999887776666643
No 158
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.9e-16 Score=158.62 Aligned_cols=200 Identities=14% Similarity=0.175 Sum_probs=156.7
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
++..++.+|++|+.+++|.+|.+.+++.-..+. ...-++..++++.++. +++.|+.|-.|++-+.. +......+
T Consensus 61 ~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~--D~s~~~~l 134 (933)
T KOG1274|consen 61 SIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA--RFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLD--DSSQEKVL 134 (933)
T ss_pred EEeecccceEEeeccceEEEeeCCCCCccceee--eeeccceEEEEecCCc--EEEeecCceeEEEEecc--ccchheee
Confidence 345677899999999999999998776432221 1225678888998888 99999999999999997 77788889
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc-cccc-CCcceEEEEEcCCCCEEEEE
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF-EILK-SKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~v~~v~~spdg~~l~s~ 159 (513)
.+|.++|.++.|+|++++|++.+.||.|++||+.++.+... -..+. .... ....+..++|+|+|..|+..
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t--------l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT--------LTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh--------cccCCccccccccceeeeeeecCCCCeEEee
Confidence 99999999999999999999999999999999987554211 00000 0001 13456789999999888889
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
+.|+.|++|+..+++....+.... .....+.+.|+|+|+||+.++.
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~~----------------------------------~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDKL----------------------------------SSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred ccCCeEEEEccCCceeheeecccc----------------------------------cccceEEEEEcCCCcEEeeecc
Confidence 999999999999988876664311 1122567899999999999998
Q ss_pred cc-eEEEEccc
Q 010302 240 LG-IKIVNLHT 249 (513)
Q Consensus 240 ~g-i~v~d~~t 249 (513)
+| |-|||.++
T Consensus 253 ~g~I~vWnv~t 263 (933)
T KOG1274|consen 253 DGQILVWNVDT 263 (933)
T ss_pred CCcEEEEeccc
Confidence 76 99999997
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=2.3e-14 Score=139.44 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=140.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
+..++|++.|+.|++||+.+++....+.. + ..+..+.+++++.. ++++++.++.|.+||.. +++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~--~-~~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~--~~~~~~~~~~~~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV--G-QRPRGITLSKDGKL-LYVCASDSDTIQVIDLA--TGEVIGTLPSGPD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC--C-CCCCceEECCCCCE-EEEEECCCCeEEEEECC--CCcEEEeccCCCC
Confidence 46788999999999999999887776653 2 33567889998873 44667788999999997 6777766665544
Q ss_pred CeEEEEEcCCCCEEEE-EcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCC-c
Q 010302 87 PVKVMRYNPVFDTVIS-ADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR-R 164 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~-~ 164 (513)
+..++|+|+++.+++ ++.++.+++||+++.+ .+..+. +...+.+++|+|+|+++++++.++ .
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--------------~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRK--------------VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--------------EEeEee-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 467899999987754 5568999999997632 222222 223467899999999999888765 5
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc--ccce
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT--LLGI 242 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s--~~gi 242 (513)
+.+||..+++.+..+.. ......++|+++|++|+.++ ...|
T Consensus 139 ~~~~d~~~~~~~~~~~~-------------------------------------~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLV-------------------------------------DQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred EEEEeCCCCeEEEEEEc-------------------------------------CCCccEEEECCCCCEEEEEcCCCCEE
Confidence 67889888776543211 01234678999999886554 3459
Q ss_pred EEEEcccCcEEEEe
Q 010302 243 KIVNLHTNKVSRIL 256 (513)
Q Consensus 243 ~v~d~~t~~~v~~~ 256 (513)
++||+.++++++.+
T Consensus 182 ~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 182 SVIDVATRKVIKKI 195 (300)
T ss_pred EEEEcCcceeeeee
Confidence 99999999887765
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.3e-17 Score=172.83 Aligned_cols=241 Identities=14% Similarity=0.119 Sum_probs=175.8
Q ss_pred CeEecCCCE----EEEEeCCCcEEEEEccCC----ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 1 MQVSVDGLL----CCSISNDKSVKIYDVVNY----DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~dg~~----las~s~D~~v~iwd~~~~----~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
++|.+.|.. ||.|..||.|-+||.... +.....+...|.+.|..+.|.+.... +++||++||.|.|||++
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDln- 147 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLN- 147 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccC-
Confidence 468887765 888889999999998652 11122334578999999999987654 89999999999999997
Q ss_pred CCCcceEEe--ecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc--ceEEE
Q 010302 73 DSNEPLISK--KVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT--TVSAI 147 (513)
Q Consensus 73 ~~~~~i~~~--~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~v 147 (513)
+.+.-.+. ..-.+.|.+++|+.. ...|+|++.+|.+.|||++.. +.+..+..+.+ .+..+
T Consensus 148 -n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~--------------~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 148 -KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK--------------KPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred -CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC--------------CcccccccCCCccceeee
Confidence 32222222 135578999999974 567799999999999999873 33444544433 47899
Q ss_pred EEcCCCC-EEEEEeCC---CcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 148 EVSPDGK-QFSITSPD---RRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 148 ~~spdg~-~l~s~s~D---~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
+|+|+.. .|++++.| -.|.+||+|. ...++++.+|... +
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G------------------------------------i 256 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG------------------------------------I 256 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc------------------------------------e
Confidence 9999874 66666654 4699999875 3344555444433 3
Q ss_pred CceEEcCCC-CEEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCC
Q 010302 223 SNAIFDESS-NFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP 300 (513)
Q Consensus 223 ~~i~fd~~g-~~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 300 (513)
.++.|.+.+ ++|+++..+ .|-+||.+||+++..+.... ..+-.++|.+++|
T Consensus 257 lslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~---------------------------nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 257 LSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG---------------------------NWCFDVQWCPRNP 309 (1049)
T ss_pred eeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC---------------------------cceeeeeecCCCc
Confidence 355666666 677766555 49999999999999886522 1144567889999
Q ss_pred eEEEeeecCceEEEEecCCCC
Q 010302 301 TLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 301 ~l~~s~~~~~~i~i~~~~~~~ 321 (513)
-+|+.++=+++|=|++..+-.
T Consensus 310 ~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhheeccceeeeeeecCC
Confidence 999999999999999988644
No 161
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.71 E-value=4.9e-16 Score=157.54 Aligned_cols=192 Identities=19% Similarity=0.166 Sum_probs=160.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEE-cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIR-LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~-l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+.|+.|++.+.|...|+|-+|++.+|-....+. -+.|.+.+..++...-++ .++|++.+|.+++||.+ ...++.
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~--~~vsa~~~Gilkfw~f~--~k~l~~ 529 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR--LLVSAGADGILKFWDFK--KKVLKK 529 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc--eEEEccCcceEEEEecC--Ccceee
Confidence 4678999999999999999999999876655542 346888999998866665 99999999999999997 556666
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+. -...+.++.++.....++.+..|-.|+++|..+ ......+.+|.+.|++++|||||++|+++
T Consensus 530 ~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t--------------~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 530 SLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT--------------RKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred eec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh--------------hhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 665 335678899999888999999999999999977 34578899999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
+.|++||+||+.++.++..+.- ..+..++.|+|+|.||++..-
T Consensus 595 smD~tIr~wDlpt~~lID~~~v-------------------------------------d~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV-------------------------------------DSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec-------------------------------------CCcceeeEECCCCCEEEEEEe
Confidence 9999999999999999876521 123468899999999999865
Q ss_pred c--ceEEEEcc
Q 010302 240 L--GIKIVNLH 248 (513)
Q Consensus 240 ~--gi~v~d~~ 248 (513)
+ ||.+|.-.
T Consensus 638 d~~gIylWsNk 648 (910)
T KOG1539|consen 638 DQNGIYLWSNK 648 (910)
T ss_pred cCceEEEEEch
Confidence 4 79999654
No 162
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=3.3e-16 Score=142.39 Aligned_cols=219 Identities=13% Similarity=0.178 Sum_probs=162.3
Q ss_pred EEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEe
Q 010302 33 IRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW 112 (513)
Q Consensus 33 ~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw 112 (513)
..+.+|...++.++...... ++.+++.|.+.+||.+. ++.++.++.+|.+.|.+++|++.+.++++++.|++..||
T Consensus 142 re~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~E--sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLE--SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhcccccceeeehhhcCCc--ceeecccccceeEEeec--cccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 34568899999887655444 89999999999999998 999999999999999999999999999999999999999
Q ss_pred cCC-CCCCCCc-----------------c---eeeeec-----CCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 010302 113 SPH-TLQFPES-----------------E---VSFRLK-----SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIR 166 (513)
Q Consensus 113 d~~-~~~~~~~-----------------~---~~~~~~-----~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~ 166 (513)
... ....|.+ . ..-+.+ ...++..+.+|.+.|.+..|-..|+.++++|.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 521 0111110 0 000011 2345677889999999999999999999999999999
Q ss_pred EEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEE
Q 010302 167 VFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIV 245 (513)
Q Consensus 167 iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~ 245 (513)
+||+++|+.+..+.+|...++ .++-+|+-++++.++.+. .++|
T Consensus 298 lwDVEtge~v~~LtGHd~ELt------------------------------------HcstHptQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELT------------------------------------HCSTHPTQRLVVTSSRDTTFRLW 341 (481)
T ss_pred eeeeccCceeccccCcchhcc------------------------------------ccccCCcceEEEEeccCceeEec
Confidence 999999999999988764432 344566677777777664 7999
Q ss_pred EcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 246 NLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 246 d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
|+..- ...+++|||+...- ...-+ ..|. -++||++|+.+.+|..+.
T Consensus 342 DFRea--------------I~sV~VFQGHtdtV--TS~vF-----------~~dd-~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 342 DFREA--------------IQSVAVFQGHTDTV--TSVVF-----------NTDD-RVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred cchhh--------------cceeeeecccccce--eEEEE-----------ecCC-ceeecCCCceEEEeeecc
Confidence 98521 12455666644322 11111 1222 278999999999997553
No 163
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1.4e-16 Score=160.37 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=138.9
Q ss_pred eEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 2 QVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 2 ~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
.|++ .-.+|+|||.||+|++||++..+...... +....+..+.|+|... ..++++.+.|.+++||++. ..++...
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~--~nSESiRDV~fsp~~~-~~F~s~~dsG~lqlWDlRq-p~r~~~k 215 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR--SNSESIRDVKFSPGYG-NKFASIHDSGYLQLWDLRQ-PDRCEKK 215 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeeccccccccc--ccchhhhceeeccCCC-ceEEEecCCceEEEeeccC-chhHHHH
Confidence 4665 45789999999999999999877666555 4567899999998764 3889999999999999983 4567777
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-EEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~s~ 159 (513)
+..|.++|.|+.|+|++.+||+|+.|++|+|||..+.+. ..+.++ .-..++.++.|-|.-+ .||++
T Consensus 216 ~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~------------~~~~tI-nTiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 216 LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA------------KPKHTI-NTIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc------------cceeEE-eecceeeeeeeccCccchhhhh
Confidence 889999999999999999999999999999999865321 122222 1235789999999766 56666
Q ss_pred e--CCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCC
Q 010302 160 S--PDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSD 193 (513)
Q Consensus 160 s--~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~ 193 (513)
+ .|..|+|||++- .-...++.+|...++.+.|..
T Consensus 283 smv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 283 SMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred hccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 6 589999999976 455678888888888877765
No 164
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=8.3e-16 Score=139.15 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=105.7
Q ss_pred CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce-EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 38 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL-ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 38 ~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i-~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
....|..++|||... .++++++.|++|++|+++. ++..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 26 P~DsIS~l~FSP~~~-~~~~A~SWD~tVR~wevq~-~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQAD-NLLAAGSWDGTVRIWEVQN-SGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccC-ceEEecccCCceEEEEEec-CCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 346799999999433 3778999999999999973 23333 23348999999999999999999999999999999988
Q ss_pred CCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 117 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK--QFSITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
++ +..+..|.++|.++.|-+... .|+|||.|++|+.||.+....+.++.-
T Consensus 104 ~Q---------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 104 GQ---------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred CC---------------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 43 566778999999999987665 899999999999999999888877653
No 165
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.7e-15 Score=137.94 Aligned_cols=191 Identities=13% Similarity=0.169 Sum_probs=141.4
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC-CC-----Ccce
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA-DS-----NEPL 78 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~-~~-----~~~i 78 (513)
-++++|+|++.|.+|.+|+++ |+.+..+..+ ...-...+.||++. ++++++.-.-+++|.+-. .. -..+
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn--q~~n~~aavSP~GR--Fia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTN--QSSNYDAAVSPDGR--FIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-Cceeeeeccc--cccccceeeCCCCc--EEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 467999999999999999998 7777666532 33445567789999 888888888899998621 11 2334
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc---cc----ccCCcceEEEEEcC
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF---EI----LKSKTTVSAIEVSP 151 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~v~~v~~sp 151 (513)
..+++|++.|..++|+++...+++.|.||+++|||+.- .++.++..+ +. ....+....+..||
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV----------rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV----------RYEAGQDPKILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc----------eEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence 56779999999999999999999999999999998743 112122222 21 12334456899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 152 DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 152 dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
+|+.||.+ ....+++|..++|+.+..++ .-....+++++|+++|
T Consensus 342 ~g~~lA~s-~gs~l~~~~se~g~~~~~~e-----------------------------------~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 342 SGDSLAVS-FGSDLKVFASEDGKDYPELE-----------------------------------DIHSTTISSISYSSDG 385 (420)
T ss_pred CCcEEEee-cCCceEEEEcccCccchhHH-----------------------------------HhhcCceeeEEecCCC
Confidence 99999864 46679999988887644332 1223456789999999
Q ss_pred CEEEEccccceEEEE
Q 010302 232 NFLIYATLLGIKIVN 246 (513)
Q Consensus 232 ~~li~~s~~gi~v~d 246 (513)
+|++++....++++-
T Consensus 386 ~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 386 KYIATCGDRYVRVIR 400 (420)
T ss_pred cEEeeecceeeeeec
Confidence 999999887766654
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.1e-15 Score=140.56 Aligned_cols=252 Identities=14% Similarity=0.149 Sum_probs=180.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|.|+|.-.+|++|+.|++++||.+.. ...++.+.+ ...++....|.|+++. .+++++....++.||+....-..+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l--~~fPi~~a~f~p~G~~-~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL--EKFPIQKAEFAPNGHS-VIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeee--ccCccceeeecCCCce-EEEecccceEEEEeeccccccccc
Confidence 57999999999999999999998863 334445443 3457888889998875 667777888999999973333334
Q ss_pred EEeecCC-CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 79 ISKKVHM-GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 79 ~~~~~h~-~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
....++. ..+.....+|++++|+..+..|.|.+....+++ .+..+ ...+.|..++|+.|++.|+
T Consensus 296 ~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e--------------li~s~-KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 296 KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE--------------LITSF-KIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh--------------hhhee-eeccEEeeEEEecCCcEEE
Confidence 4444444 346677889999999999999999998776633 23333 3567899999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
.++.+|.|.+||+++.++++.+.. .+....++++-+.+|.|+++|
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D-----------------------------------~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVD-----------------------------------DGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEee-----------------------------------cCccceeeeeecCCCceEEec
Confidence 999999999999999988887642 112245678889999999999
Q ss_pred cccc-eEEEEcccC------cEEE----------------------EeC-CCCccchhhe---eccccCCcCCcc----e
Q 010302 238 TLLG-IKIVNLHTN------KVSR----------------------ILG-KVENNDRFLR---IALYQGDRSSKK----V 280 (513)
Q Consensus 238 s~~g-i~v~d~~t~------~~v~----------------------~~g-~~~~~~r~~~---~~~~~~~~~~~~----~ 280 (513)
|..| |.|||..+- +.+. +.. .....+|.+. .++|.+.|..+. +
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 9998 567774321 1111 110 0111333332 235555554432 5
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 281 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
..++++ |.+..+|-|-+++|+.+|-
T Consensus 486 tc~aFS-----------P~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 486 TCMAFS-----------PNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred EEEEec-----------CCCceEEeecCCCceeeEe
Confidence 555553 7888999999999999994
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.68 E-value=8e-16 Score=140.40 Aligned_cols=204 Identities=13% Similarity=0.166 Sum_probs=147.6
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCC---CcEEEEEEcCCCcceEEEEeCCCCeEEEEec-CCCCCcceE
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIP---GAVEWVYKQGDVKAGLAISDRNSSFVHIYDA-RADSNEPLI 79 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~---~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~-~~~~~~~i~ 79 (513)
-|+-.++|+.+.|.-|++||..+|++....+.-.|. ....+++|+|++. .+++|. ...|+++|+ +.+...+++
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe--qlfaGy-krcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE--QLFAGY-KRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC--eEeecc-cceEEEeeccCCCCCCcch
Confidence 367889999999999999999999988776643333 2457899999999 666654 578999998 433223333
Q ss_pred Eee-----cCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 80 SKK-----VHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 80 ~~~-----~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
... +..+-|.+++|+| +.+.++.++....+-|+.-.. ..+++.+-+|.+.|+.++|+++|
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--------------~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--------------RRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC--------------CCceeeecccCCCeeeEEeccCc
Confidence 322 3367789999999 566899999888877774433 46688888999999999999999
Q ss_pred CEEEEEeC-CCcEEEEEcCCCe-EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 154 KQFSITSP-DRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 154 ~~l~s~s~-D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
+.|.+|+. |-.|..||++..+ .+..+..|.. +.++|+. .-.++.|
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~------------------~TNQRI~---------------FDld~~~ 309 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVG------------------DTNQRIL---------------FDLDPKG 309 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhcc------------------CccceEE---------------EecCCCC
Confidence 99999994 8899999998633 2222221110 0112211 1246899
Q ss_pred CEEEEccccc-eEEEEccc-CcEEEEeC
Q 010302 232 NFLIYATLLG-IKIVNLHT-NKVSRILG 257 (513)
Q Consensus 232 ~~li~~s~~g-i~v~d~~t-~~~v~~~g 257 (513)
++|+.|+.+| |++||+.+ |..+.+++
T Consensus 310 ~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 310 EILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred ceeeccCCCccEEEEecCCCCCcccccc
Confidence 9999997666 99999987 66555554
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.68 E-value=5.8e-16 Score=144.73 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=126.2
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCcee-----EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMM-----LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~-----~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
++|+| +.+.|||||.|.+|.||.+....+. ....|.+|...|..+.|+|.... +|+|++.|++|.+|++. +
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn~v~iWnv~--t 163 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDNTVSIWNVG--T 163 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCceEEEEecc--C
Confidence 46887 5688999999999999999764332 23446689999999999998665 78888899999999997 8
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc-eEEEEEcCCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT-VSAIEVSPDG 153 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~spdg 153 (513)
++.+.++. |...|.++.|+.+|.+|++.+.|..|||||.++++ .+.+-..|.+. ...+.|-.+|
T Consensus 164 geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~--------------~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 164 GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT--------------VVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc--------------EeeecccccCCCcceeEEeccC
Confidence 88888887 99999999999999999999999999999999844 45555566544 5667788899
Q ss_pred CEEEEEe---CCCcEEEEEcCC
Q 010302 154 KQFSITS---PDRRIRVFWFRT 172 (513)
Q Consensus 154 ~~l~s~s---~D~~I~iwd~~t 172 (513)
..+.||- .+..+-+||..+
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred ceeeeccccccccceeccCccc
Confidence 9555554 478899998765
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.1e-15 Score=144.93 Aligned_cols=196 Identities=17% Similarity=0.228 Sum_probs=146.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
.+.|||||.|.+|++||+.++++...+. .|.+.|..+.|.+.... ++++|+.|+++.+.|.+. ....-..+ .-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~-~~~s~~~w-k~~g 330 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRD-PSNSGKEW-KFDG 330 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehh--hcCCceeEEEecCCCce-EEEeccccceEEeeeccC-ccccCceE-Eecc
Confidence 4679999999999999999999887765 78899999999987553 899999999999999983 11222222 2456
Q ss_pred CeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CEEEEEeCCCc
Q 010302 87 PVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRR 164 (513)
Q Consensus 87 ~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~s~s~D~~ 164 (513)
.|-.++|+|. ...++++..||+++-+|+|.. ++++.++..|.+.|.++++++.- .++++++.|+.
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-------------~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-------------GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCC-------------CCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 7899999994 567788889999999999883 47789999999999999999865 46789999999
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE-EEEccccc-e
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF-LIYATLLG-I 242 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~-li~~s~~g-i 242 (513)
+++|++..-..-.+... ....| ...+.+++|+--+ ++++...+ +
T Consensus 398 Vklw~~~~~~~~~v~~~-------------------~~~~~---------------rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEH-------------------SFKLG---------------RLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred EEEEeecCCCCcccccc-------------------ccccc---------------ceeecccCCCcceEEEecCccceE
Confidence 99999864322111100 00011 1235566666654 44554444 8
Q ss_pred EEEEcccCcEEE
Q 010302 243 KIVNLHTNKVSR 254 (513)
Q Consensus 243 ~v~d~~t~~~v~ 254 (513)
+|||+.++..++
T Consensus 444 ~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 444 RVWDIFTNSPVR 455 (463)
T ss_pred EEeecccChhHH
Confidence 999998887654
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=8.3e-16 Score=151.65 Aligned_cols=264 Identities=15% Similarity=0.162 Sum_probs=173.6
Q ss_pred CCEEEEEeCCCcEEEEEccCCcee----EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE--
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMM----LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS-- 80 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~----~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~-- 80 (513)
.+.||.+.+||.|.++|.+..... .......|...+..+.|.| ++ ..+++.+.|.++++||++ ..+++..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge-~~lVsasGDsT~r~Wdvk--~s~l~G~~~ 139 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE-SLLVSASGDSTIRPWDVK--TSRLVGGRL 139 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc-eeEEEccCCceeeeeeec--cceeeccee
Confidence 467888889999999999754322 1223446888899999999 33 388999999999999998 5566555
Q ss_pred eecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCc----ceeeeecCC---------ccccccccCCcceEE
Q 010302 81 KKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPES----EVSFRLKSD---------TNLFEILKSKTTVSA 146 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~~~~v~~ 146 (513)
+.+|...|.+++|.| +...|++|+.||.|.|||++....-.. .-.+....+ ..+.....+...|.+
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 779999999999999 567889999999999999876431100 000111111 112222335555666
Q ss_pred ---EEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 147 ---IEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 147 ---v~~spdg~~l~s~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
+.+..|...||+++. |+.|+|||++.......... .+...+... .+.....
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep------------~~~~~~~t~-------------skrs~G~ 274 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP------------RGSDKYPTH-------------SKRSVGQ 274 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCC------------CcccCccCc-------------ccceeee
Confidence 667789999999887 99999999998665332211 000000000 0112345
Q ss_pred CceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCe
Q 010302 223 SNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT 301 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 301 (513)
.+++.|.+|.+|...+.+ .|.+||+.+-.+ . -++.|.|+....--.. +...+|.+
T Consensus 275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~-s------------P~~~~sg~~~~sf~vk-----------s~lSpd~~ 330 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSI-S------------PVAEFSGKLNSSFYVK-----------SELSPDDC 330 (720)
T ss_pred EEEEecCCCCeEEEEecCCcEEEEeccccCc-C------------chhhccCcccceeeee-----------eecCCCCc
Confidence 688999999988876555 599999864321 0 1222333222111111 11248899
Q ss_pred EEEeeecCceEEEEecCCCCCC
Q 010302 302 LLCCAFKRHRIYLFSRREPEEP 323 (513)
Q Consensus 302 l~~s~~~~~~i~i~~~~~~~~~ 323 (513)
-++||+.+.+.|||.-..++..
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred eEeccCCCcceeeeeecCccCC
Confidence 9999999999999987776533
No 171
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.67 E-value=2.2e-15 Score=150.19 Aligned_cols=275 Identities=12% Similarity=0.133 Sum_probs=183.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCcee-EEEEcCCCCCcEEEEEEcCCC---------cceEEEEeCCCCeEEEEecC
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMM-LMIRLPFIPGAVEWVYKQGDV---------KAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~-~~~~l~~~~~~v~~v~~s~~~---------~~~~l~s~~~d~~I~iwd~~ 71 (513)
.|++..++|...-.|..++|||++.-+.. +...+-.|...|+.+.-.|.. ....+++|+.|++|++|++.
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLA 410 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecc
Confidence 58888889988889999999999853221 122222567777766554410 11257899999999999986
Q ss_pred CCCCcceEE-----------------------------------eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 72 ADSNEPLIS-----------------------------------KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 72 ~~~~~~i~~-----------------------------------~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
......++. .-.....+.+++.+|+|++|++|+.-|+++++++..
T Consensus 411 ~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~ 490 (1080)
T KOG1408|consen 411 FCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE 490 (1080)
T ss_pred cccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh
Confidence 321111110 001234689999999999999999999999999966
Q ss_pred CCCCCcceeeeecCCccccccccCCcceEEEEEcC---CCCEEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcC
Q 010302 117 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP---DGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRS 192 (513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~ 192 (513)
. +.+..+..|...|.|+.||- ..++||+++.|..|+|||+.. ..+++++++|...++.+.+.
T Consensus 491 l--------------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 491 L--------------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred h--------------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 3 33556678999999999985 346899999999999999864 67788999999999888876
Q ss_pred CCCcc-ccccccccceeee--------eeecccc----CCCCCCceEEcCCCCEEEEccc-cceEEEEcccCcEEEEeCC
Q 010302 193 DAPLY-RLEAIDFGRRMAV--------EKEIEKT----ETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGK 258 (513)
Q Consensus 193 ~~~~~-~l~~~~~~~r~~~--------e~e~~~~----~~~~~~~i~fd~~g~~li~~s~-~gi~v~d~~t~~~v~~~g~ 258 (513)
...+. ..-...-++.+.. .+.+..+ ....+-.+..||+.++++.+.- ..|+|+|+.+|+.++.+.+
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc
Confidence 65321 1101111111100 0001110 1122335788999999998765 4699999999999999854
Q ss_pred CCc-cchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 259 VEN-NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 259 ~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
..+ ....+++.+ .|.++.++|...|+.+-+|.
T Consensus 637 s~~~eG~lIKv~l--------------------------DPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 637 SRDHEGDLIKVIL--------------------------DPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred cccCCCceEEEEE--------------------------CCCccEEEEeecCCceEEEE
Confidence 321 122223322 36667777777777765554
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.9e-14 Score=126.64 Aligned_cols=269 Identities=10% Similarity=0.092 Sum_probs=176.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCc--------eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYD--------MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD 73 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~--------~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~ 73 (513)
+|||.+++|+.|+.+|+|-++.+++.. ...+....+|.+++..+.|..+ ++++++. |.|+-|..+..
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeeccC-ceEEEeeehhh
Confidence 589999999999999999999986421 1123334688999999999844 6777654 99999887521
Q ss_pred C----CcceEEee--cCC-----CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 74 S----NEPLISKK--VHM-----GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 74 ~----~~~i~~~~--~h~-----~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
. .+.+...+ .|. ..|.++...|..+.++.++.|+.++-||++++ +...++.+|..
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G--------------~i~r~~rGHtD 157 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG--------------RIQREYRGHTD 157 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC--------------EEEEEEcCCcc
Confidence 1 11111111 222 35889999998888888889999999999884 44778899999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
.+.++.--.....+.+|+.||++|+||.++++++++++.-... + +..+... -
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~--------~-------------------~lRp~~g-~ 209 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP--------N-------------------LLRPDWG-K 209 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh--------h-------------------hcCcccC-c
Confidence 9999998555556789999999999999999999988531110 0 0000001 1
Q ss_pred CceEEcCCCCEEEEccccceEEEEcccCcEEEEeCCCC--ccchhheeccc-cCC--cC----Ccceeeeeccccc--cc
Q 010302 223 SNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVE--NNDRFLRIALY-QGD--RS----SKKVRKIPAAAAN--AN 291 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~--~~~r~~~~~~~-~~~--~~----~~~~~~~~~~~~~--~~ 291 (513)
...+.+-+..++++|....+.+|++.+-++..++.-.. .-+-|..=-+. .|. -. -.++.......+. ..
T Consensus 210 wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~ 289 (325)
T KOG0649|consen 210 WIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACY 289 (325)
T ss_pred eeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccCCcccee
Confidence 12456667789999988889999999888877763211 01111110000 010 00 0112221111122 44
Q ss_pred cCCCCCCCCeEEEeeecCceEEEEec
Q 010302 292 ESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 292 ~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
..+|+..-..++..++..+|+.||++
T Consensus 290 s~s~~~~p~k~~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 290 SASWQTSPIKFISIAGFSNKLHILKD 315 (325)
T ss_pred eecccCCceEEEEecccceeeeeeec
Confidence 55666555678888899999999964
No 173
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.6e-16 Score=137.49 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=131.1
Q ss_pred eEec--CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-cce
Q 010302 2 QVSV--DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPL 78 (513)
Q Consensus 2 ~~s~--dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~-~~i 78 (513)
+|.. -|.+||+|+.||.|-||.-++++-........|...+++++|.|....++|++++.||.|.|.+.+...+ ...
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 4444 6999999999999999999988766666667899999999999999999999999999999999874322 223
Q ss_pred EEeecCCCCeEEEEEcCC---C-----------CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 79 ISKKVHMGPVKVMRYNPV---F-----------DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~---~-----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
.....|.-.|++++|.|. | +.|+||+.|..|+||+....+. ..-..+.+|.++|
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w------------~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW------------KLERTLEGHKDWV 210 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch------------hhhhhhhhcchhh
Confidence 334589999999999986 4 5799999999999998766321 2234588999999
Q ss_pred EEEEEcCCC----CEEEEEeCCCcEEEEEcC
Q 010302 145 SAIEVSPDG----KQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 145 ~~v~~spdg----~~l~s~s~D~~I~iwd~~ 171 (513)
..++|+|.- .+||++|.||++.||-.+
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 999999964 379999999999999765
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.8e-15 Score=133.21 Aligned_cols=250 Identities=13% Similarity=0.118 Sum_probs=168.1
Q ss_pred EEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCC
Q 010302 42 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 121 (513)
Q Consensus 42 v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 121 (513)
..++.|++.|. +++.|..||.|.|||+. +...-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~--~lAvGc~nG~vvI~D~~--T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--- 98 (405)
T KOG1273|consen 26 AECCQFSRWGD--YLAVGCANGRVVIYDFD--TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--- 98 (405)
T ss_pred cceEEeccCcc--eeeeeccCCcEEEEEcc--ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC---
Confidence 67889999999 99999999999999997 777888888999999999999999999999999999999998743
Q ss_pred cceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccc
Q 010302 122 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 200 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~ 200 (513)
+++.+. ..++|+.+.|+|..+..+.++ -+..-.+-++..++.. .+.
T Consensus 99 -----------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp-------------------- 145 (405)
T KOG1273|consen 99 -----------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLP-------------------- 145 (405)
T ss_pred -----------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-ecc--------------------
Confidence 344443 457899999999665444333 2222333333332110 000
Q ss_pred cccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC-ccchhheeccccCCcCCc
Q 010302 201 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE-NNDRFLRIALYQGDRSSK 278 (513)
Q Consensus 201 ~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~-~~~r~~~~~~~~~~~~~~ 278 (513)
...+ ...+.......|++.|++|++|+..| +.|+|..|-+++..+.-.. .+++.+.++
T Consensus 146 ---------~d~d--~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s--------- 205 (405)
T KOG1273|consen 146 ---------KDDD--GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS--------- 205 (405)
T ss_pred ---------CCCc--cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe---------
Confidence 0000 01111223347999999999999887 9999999999887764322 133333332
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCccc------CCCcCccCCCCCc--------ccccc
Q 010302 279 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDA------TKGRDIFNEKPPP--------DELLA 344 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~~------~~~~~~~~~~p~~--------~~~~~ 344 (513)
..+..|+.-..|+.|+.+.-++-.+..+. .+--|+.|..+=+ +=+.+
T Consensus 206 -------------------~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a 266 (405)
T KOG1273|consen 206 -------------------RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCA 266 (405)
T ss_pred -------------------ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEe
Confidence 44556777777888888876643322111 1124666666522 11221
Q ss_pred ccccCCCccCCCCCEEEEEeCCeEEEEEeCCCC
Q 010302 345 VSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEE 377 (513)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~t~~G~i~i~l~~~~ 377 (513)
. ....+..-+.+++.|.++=-|.+..
T Consensus 267 ~-------s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 267 G-------SARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred c-------cccceeEEEEecCCcceeeeecCCc
Confidence 1 2456677889999999988888754
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.8e-14 Score=134.02 Aligned_cols=152 Identities=17% Similarity=0.263 Sum_probs=121.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcC-CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLP-FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~-~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
+.++|+.+=.+ .|+|||+++.++++.+... .++.+++.++.+..+..+..=.....|.|.+||.. +.+++..+..|
T Consensus 96 Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~--nl~~v~~I~aH 172 (391)
T KOG2110|consen 96 NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI--NLQPVNTINAH 172 (391)
T ss_pred ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc--cceeeeEEEec
Confidence 56677777655 4999999999998887754 55666777766665552222233457899999998 88999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCc-EEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEEEEcCCCCEEEEEeC
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGI-IEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+++.+++|+++|.+|+++|+.|+ ||++.+.+ ++.++++.. ....|.+++|+||+++|++.|.
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~--------------G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--------------GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------------ccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 999999999999999999999998 68998866 445666654 2345899999999999999999
Q ss_pred CCcEEEEEcCCCe
Q 010302 162 DRRIRVFWFRTGK 174 (513)
Q Consensus 162 D~~I~iwd~~tg~ 174 (513)
.++|++|.+.+-.
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 9999999987643
No 176
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.7e-15 Score=142.00 Aligned_cols=198 Identities=16% Similarity=0.241 Sum_probs=159.4
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.+||++++||..|..|.|.+....+++.+..++++ +.+..+.|+.+++ .+++++.+|.|.+||++ +..+++++
T Consensus 310 eVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk--~l~~~~~~GeV~v~nl~--~~~~~~rf 382 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSK--ELLASGGTGEVYVWNLR--QNSCLHRF 382 (514)
T ss_pred EecCCCCeEEEcccCceEEeehhhhhhhhheeeec---cEEeeEEEecCCc--EEEEEcCCceEEEEecC--CcceEEEE
Confidence 47899999999999999999999999999988865 7899999998887 66667778899999998 77888888
Q ss_pred ecCCCCe--EEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 82 KVHMGPV--KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 82 ~~h~~~V--~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.. .+.| ++++.++++.+|++||..|.|.|||.++ .+.....+++..+..-...|++++|+||++.||.+
T Consensus 383 ~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s--------~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 383 VD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS--------CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred ee-cCccceeeeeecCCCceEEeccCcceEEEeccch--------hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 62 2233 4566778999999999999999998765 22333456777777777889999999999999988
Q ss_pred e--CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 160 S--PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 160 s--~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
| .+..+|+-.+.+......+... ......+++++|+|.|-|++.|
T Consensus 454 S~~~knalrLVHvPS~TVFsNfP~~---------------------------------n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 454 SRVKKNALRLVHVPSCTVFSNFPTS---------------------------------NTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred hhccccceEEEeccceeeeccCCCC---------------------------------CCcccceEEEEecCCCceEEee
Confidence 8 4788999888887766554321 1122456899999999999999
Q ss_pred cccc-eEEEEcc
Q 010302 238 TLLG-IKIVNLH 248 (513)
Q Consensus 238 s~~g-i~v~d~~ 248 (513)
...| +.+|-+.
T Consensus 501 Ne~grv~l~kL~ 512 (514)
T KOG2055|consen 501 NEAGRVHLFKLH 512 (514)
T ss_pred cCCCceeeEeec
Confidence 9876 8888663
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.4e-15 Score=144.91 Aligned_cols=235 Identities=13% Similarity=0.100 Sum_probs=166.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD------- 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~------- 73 (513)
|+..|.|.+||+|+.||+|+||.+.||.++....+. +.|.+++|.|.+...+++.+-... +.|-+...+
T Consensus 406 iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~ 481 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGP 481 (733)
T ss_pred EEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcc
Confidence 356788999999999999999999999999998866 689999999988866666554443 333321100
Q ss_pred ----------------------------CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC---CcEEEecCCCCCCCCc
Q 010302 74 ----------------------------SNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPES 122 (513)
Q Consensus 74 ----------------------------~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~ 122 (513)
...-++..-.|...|..+.|+..|++|++...+ ..|.|.++..
T Consensus 482 t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK------ 555 (733)
T KOG0650|consen 482 TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK------ 555 (733)
T ss_pred hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc------
Confidence 001122333688899999999999999887754 3577777744
Q ss_pred ceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccc
Q 010302 123 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI 202 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 202 (513)
.....-|...++.|.++.|+|...+|++++ -..|+|||+..+++++.+..
T Consensus 556 --------~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t--------------------- 605 (733)
T KOG0650|consen 556 --------RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT--------------------- 605 (733)
T ss_pred --------ccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc---------------------
Confidence 222344556678899999999999888765 67799999877555443211
Q ss_pred cccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccC-cEEEEeCCCCccchhheeccccCCcCCcce
Q 010302 203 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN-KVSRILGKVENNDRFLRIALYQGDRSSKKV 280 (513)
Q Consensus 203 ~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~-~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~ 280 (513)
....+..++.++.|.-|+.+++++ +..+|+.-+ +..+.+..|+..+|-+...
T Consensus 606 ---------------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H----------- 659 (733)
T KOG0650|consen 606 ---------------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH----------- 659 (733)
T ss_pred ---------------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc-----------
Confidence 112345778899999999998876 777788743 5566666666444433322
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 281 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+.=-|||||++|+.++||+..
T Consensus 660 -----------------~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 660 -----------------KRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred -----------------cccceeeeecCCCcEEEEeee
Confidence 333479999999999999765
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=1.7e-14 Score=131.75 Aligned_cols=245 Identities=13% Similarity=0.116 Sum_probs=169.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc------------eeEEEEcCCCCCcEEEEEEc-----CCCcceEEEEeCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD------------MMLMIRLPFIPGAVEWVYKQ-----GDVKAGLAISDRNSS 63 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~------------~~~~~~l~~~~~~v~~v~~s-----~~~~~~~l~s~~~d~ 63 (513)
..|||||.-|++-+.|..+++|++..-. ....++.. ....+...+|- .++...+.++.+.+.
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 3699999999999999999999986311 11111111 12233333332 223333888889999
Q ss_pred eEEEEecCCCCCcceEEee--cCCCC---eEEEEEcCCCCEEEEEcCCCcEEEecC-CCCCCCCcceeeeecCCccccc-
Q 010302 64 FVHIYDARADSNEPLISKK--VHMGP---VKVMRYNPVFDTVISADDKGIIEYWSP-HTLQFPESEVSFRLKSDTNLFE- 136 (513)
Q Consensus 64 ~I~iwd~~~~~~~~i~~~~--~h~~~---V~~l~~sp~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~- 136 (513)
-|++||.- +++....+. .|... ..+++|+|||.+|+.|. ...|+++|+ +.+.. .+.+.
T Consensus 134 PIh~wdaf--tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~------------c~vy~t 198 (406)
T KOG2919|consen 134 PIHLWDAF--TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRD------------CPVYTT 198 (406)
T ss_pred ceeeeecc--ccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCC------------Ccchhh
Confidence 99999997 665555544 44443 46899999999998766 568999998 44321 11222
Q ss_pred ----cccCCcceEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeee
Q 010302 137 ----ILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 211 (513)
Q Consensus 137 ----~~~~~~~v~~v~~spd-g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e 211 (513)
-.+..+-+.+++|||- .+.++.++...++-||.-..++.+..+.+|.
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------------------------- 250 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------------------------- 250 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC----------------------------
Confidence 2234677999999994 5589999999999999988888887775543
Q ss_pred eeccccCCCCCCceEEcCCCCEEEEccc--cceEEEEcc-cCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccc
Q 010302 212 KEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLH-TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 288 (513)
Q Consensus 212 ~e~~~~~~~~~~~i~fd~~g~~li~~s~--~gi~v~d~~-t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
..++.+.|.++|+-|.+++. +.|-.||+. .++.+..++++-+ ... ++-+|- +
T Consensus 251 --------gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~-~TN-QRI~FD------------l--- 305 (406)
T KOG2919|consen 251 --------GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG-DTN-QRILFD------------L--- 305 (406)
T ss_pred --------CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc-Ccc-ceEEEe------------c---
Confidence 34567889999999999875 469999996 4566666655431 000 111111 1
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 010302 289 NANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 322 (513)
Q Consensus 289 ~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~ 322 (513)
.+++.++++|+-++.|.+|..+.+.+
T Consensus 306 --------d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 306 --------DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred --------CCCCceeeccCCCccEEEEecCCCCC
Confidence 47888999999999999999887653
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.65 E-value=4.1e-16 Score=142.60 Aligned_cols=258 Identities=13% Similarity=0.111 Sum_probs=174.4
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee---c
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK---V 83 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~---~ 83 (513)
.-+||.++.-|.|+|.|..+++....+. +|...++.+.+.|...+ ++++++.|.+|++|+++ +..++..+. +
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~--ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~--~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYR--GHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQ--TDVCVAVFGGVEG 179 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhcccee--ccCccchhhhcCCCCCc-EEEEecCCceEEEEecc--CCeEEEEeccccc
Confidence 3578999999999999999888766655 89999999999998654 88999999999999998 888888875 8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc---ceeeeecCCc----------ccc-ccccCCcceEEEEE
Q 010302 84 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES---EVSFRLKSDT----------NLF-EILKSKTTVSAIEV 149 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~----------~~~-~~~~~~~~v~~v~~ 149 (513)
|.+.|.++.|+++|.+|+|++.|.++++|++...+++.. .+.|..+..+ +.+ +..-|..+|.|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 999999999999999999999999999999875444321 1122211111 111 22348888999998
Q ss_pred cCCCCEEEEEeCCCcEEEEEcC-CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEc
Q 010302 150 SPDGKQFSITSPDRRIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 228 (513)
Q Consensus 150 spdg~~l~s~s~D~~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd 228 (513)
-|.++++-|-++.|..|... -++.+..... +. ....+..+-++.. ......--+||
T Consensus 260 --~gd~ilSkscenaI~~w~pgkl~e~~~~vkp----------~e----------s~~Ti~~~~~~~~-c~iWfirf~~d 316 (385)
T KOG1034|consen 260 --FGDFILSKSCENAIVCWKPGKLEESIHNVKP----------PE----------SATTILGEFDYPM-CDIWFIRFAFD 316 (385)
T ss_pred --HhhheeecccCceEEEEecchhhhhhhccCC----------Cc----------cceeeeeEeccCc-cceEEEEEeec
Confidence 67899999989999999863 1221111100 00 0000111110000 00011234789
Q ss_pred CCCCEEEEccccc-eEEEEcccCcEEE--EeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 229 ESSNFLIYATLLG-IKIVNLHTNKVSR--ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 229 ~~g~~li~~s~~g-i~v~d~~t~~~v~--~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
+-++.|+.+...| +.+||+..++... ++-.+.+..+ +.-..| ..|+.++..
T Consensus 317 ~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~t---------------VRQ~sf-----------S~dgs~lv~ 370 (385)
T KOG1034|consen 317 PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGST---------------VRQTSF-----------SRDGSILVL 370 (385)
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccce---------------eeeeee-----------cccCcEEEE
Confidence 9999999987665 9999998776531 1111111111 111222 378888888
Q ss_pred eecCceEEEEecC
Q 010302 306 AFKRHRIYLFSRR 318 (513)
Q Consensus 306 ~~~~~~i~i~~~~ 318 (513)
--+++.|.-|++.
T Consensus 371 vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 371 VCDDGTVWRWDRV 383 (385)
T ss_pred EeCCCcEEEEEee
Confidence 8899999999875
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=9.3e-15 Score=142.69 Aligned_cols=255 Identities=12% Similarity=0.128 Sum_probs=163.1
Q ss_pred EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC------CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC
Q 010302 34 RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA------DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG 107 (513)
Q Consensus 34 ~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~------~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg 107 (513)
.+..|...+..+.|.+... .+++++.|++|++|+++. ...+++.++.+|.++|.|+++.++++.+.+|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 3445667777788877766 899999999999999931 23478899999999999999999999999999999
Q ss_pred cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccH----
Q 010302 108 IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESL---- 183 (513)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~---- 183 (513)
+|+.|++....-|.. .++.......+.+|...|+.+++|+....|++++.||++|+|+...... .++....
T Consensus 367 ~I~~w~~p~n~dp~d----s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDD----SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred eeeeeccCCCCCccc----ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999996643221111 0111233456788999999999999999999999999999999766544 2222111
Q ss_pred ---------HHHHHHhcCCCCccccccccccceeeeeeeccccC---CCCCCceEEcCCCCEEEEccc-cceEEEEcccC
Q 010302 184 ---------EVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE---TAPPSNAIFDESSNFLIYATL-LGIKIVNLHTN 250 (513)
Q Consensus 184 ---------~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~---~~~~~~i~fd~~g~~li~~s~-~gi~v~d~~t~ 250 (513)
.....+..-....+.++..+.+.++.+-.-..... .....-+++.+++.+.+.+-. ..|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 00000000011122233333332222211101111 122334566666665555533 35888888888
Q ss_pred cEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 010302 251 KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 323 (513)
Q Consensus 251 ~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~ 323 (513)
+++.....+.-. +..+.. .+++..+.+|..|+++.+|....+--.
T Consensus 522 ~~l~s~~a~~~s-----------------vtslai-----------~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 KILHSMVAHKDS-----------------VTSLAI-----------DPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ccchheeeccce-----------------ecceee-----------cCCCceEEeecCCceeehhhccchhee
Confidence 776655433311 111111 277888999999999999988765433
No 181
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.62 E-value=9.5e-15 Score=144.30 Aligned_cols=246 Identities=12% Similarity=0.080 Sum_probs=162.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS------ 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~------ 74 (513)
+.|-|-...|++++.|.++++||+++.++......-+|.+.+..++|.+.... ++++|+.|+.|.|||++-..
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~ 184 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEE 184 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHH
Confidence 35677556799999999999999999887766555589999999999988664 89999999999999986321
Q ss_pred ----------C--cc-------eEEeecCCCCeEE---EEEcCCCCEEEEEcC-CCcEEEecCCCCCCCCcceeeeecCC
Q 010302 75 ----------N--EP-------LISKKVHMGPVKV---MRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKSD 131 (513)
Q Consensus 75 ----------~--~~-------i~~~~~h~~~V~~---l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~ 131 (513)
+ ++ ++....|...|.+ +.+..|...|++++. |+.|++||+++...+.. +
T Consensus 185 ~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r--------~ 256 (720)
T KOG0321|consen 185 FDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR--------Q 256 (720)
T ss_pred HhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc--------c
Confidence 0 01 1112244445555 556678889999997 99999999988554322 2
Q ss_pred cccc--ccccC---CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEecccHHHHHHHhcCCCCccccccccc
Q 010302 132 TNLF--EILKS---KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDF 204 (513)
Q Consensus 132 ~~~~--~~~~~---~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 204 (513)
++.. .+..| .-.+.+++....|.+|...|.|+.|..||+.+... +..+.++..
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-------------------- 316 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-------------------- 316 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc--------------------
Confidence 2222 22223 23477888888889998888899999999986432 111111000
Q ss_pred cceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEE--EEeCCCCccchhheeccccCCcCCccee
Q 010302 205 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS--RILGKVENNDRFLRIALYQGDRSSKKVR 281 (513)
Q Consensus 205 ~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v--~~~g~~~~~~r~~~~~~~~~~~~~~~~~ 281 (513)
.++ ...-..++++.+|++++.++ ..+|.+.+-+.- ..+|+.- .
T Consensus 317 -~sf-------------~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~-e------------------- 362 (720)
T KOG0321|consen 317 -SSF-------------YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR-E------------------- 362 (720)
T ss_pred -cee-------------eeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce-E-------------------
Confidence 000 01124678999999998886 788887654321 1222211 0
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 282 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
.-.+.|.+.+-+=++|+++|-|+.||.-
T Consensus 363 --------Vt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 363 --------VTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred --------EEEEeeccccCCCceeeccCcceEEEec
Confidence 1122333444344566699999999965
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.62 E-value=2.2e-15 Score=141.52 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=133.1
Q ss_pred eEecCCC-EEEEEeCCCcEEEEEccCCc-------eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC--
Q 010302 2 QVSVDGL-LCCSISNDKSVKIYDVVNYD-------MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR-- 71 (513)
Q Consensus 2 ~~s~dg~-~las~s~D~~v~iwd~~~~~-------~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~-- 71 (513)
.|.++.. +||||+.|..|+||-++..+ ....-.+..|...++.+.|+|+++ +++||+.++.|.+|-..
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEEEEecCc
Confidence 3555554 99999999999999887532 223344678999999999999999 99999999999999764
Q ss_pred ------------CCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc
Q 010302 72 ------------ADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 139 (513)
Q Consensus 72 ------------~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (513)
.........+.+|...|..++|+|+++.+++++.|.++++||+.. +..+..+..
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~--------------G~l~~~~~d 163 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA--------------GQLLAILDD 163 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc--------------ceeEeeccc
Confidence 111233445568999999999999999999999999999999988 455777888
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 140 SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
|...+..++|.|-++++++-+.|...+.+.+...+.++..
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeee
Confidence 9999999999999999999999998888887765554443
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.9e-14 Score=128.88 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=117.0
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC-C
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM-G 86 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~-~ 86 (513)
..+|++-..|+|++||..+++.+..++ +++..++.+.|..+...-.+.+++.||+|++||++............|. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 457778889999999999988877755 8888888999887544448899999999999999844444444455665 5
Q ss_pred CeEEEEEcCCCCEEEEEcC----CCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcCC-CCEEEEEe
Q 010302 87 PVKVMRYNPVFDTVISADD----KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPD-GKQFSITS 160 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~spd-g~~l~s~s 160 (513)
+..+++-+-.++.++.|.+ +-.+.+||++..+ +.+..+ ..|..-|++++|+|+ .+.|++||
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------------q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS 185 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------------QLLRQLNESHNDDVTQLRFHPSDPNLLLSGS 185 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEecccc-------------chhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence 6677777767888887763 5678999998743 324443 459999999999995 56899999
Q ss_pred CCCcEEEEEcCCC
Q 010302 161 PDRRIRVFWFRTG 173 (513)
Q Consensus 161 ~D~~I~iwd~~tg 173 (513)
.||.|.+||+..-
T Consensus 186 vDGLvnlfD~~~d 198 (376)
T KOG1188|consen 186 VDGLVNLFDTKKD 198 (376)
T ss_pred ccceEEeeecCCC
Confidence 9999999998653
No 184
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-14 Score=139.50 Aligned_cols=200 Identities=17% Similarity=0.228 Sum_probs=154.7
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC-
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH- 84 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h- 84 (513)
...|+++|+..+.|+|||++...+ ...+..|...|.++.+..... ++++++..|.|.|..+. ++.....+...
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~--hr~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~--t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLI--HRFLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTK--TKQKTTTFTIDS 163 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHH--hhhccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecc--cCccccceecCC
Confidence 347899999999999999984322 234568889999999877666 99999999999999987 66666666533
Q ss_pred CCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc-cccCCcceEEEEEcCCC-CEEEEEeC
Q 010302 85 MGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE-ILKSKTTVSAIEVSPDG-KQFSITSP 161 (513)
Q Consensus 85 ~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~spdg-~~l~s~s~ 161 (513)
...|.-+.|+|..+ +|.+++.+|.|.+||+... .+.+. ...|..+...|||||.. ..|++.+.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~--------------sp~~~~~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM--------------SPIFHASEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCC--------------CcccchhhhccCCcCcceecCCccceEEEecc
Confidence 34566899999765 5578999999999999662 33443 34599999999999955 57789999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
|..|.+||.++.+....+.. ..+...++|.++|-+|+.|+..|
T Consensus 230 Dkki~~yD~~s~~s~~~l~y-------------------------------------~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLTY-------------------------------------SHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred cceEEEeecccccccceeee-------------------------------------cCCcceeeecCCceEEEeecCCc
Confidence 99999999987665444321 13567899999999999998877
Q ss_pred -eEEEEcc-cCcEEEEeCCCCcc
Q 010302 242 -IKIVNLH-TNKVSRILGKVENN 262 (513)
Q Consensus 242 -i~v~d~~-t~~~v~~~g~~~~~ 262 (513)
|..||+. +...+.++..|+..
T Consensus 273 ~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 273 ELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred eEEEEecccCCCCceEeeecccc
Confidence 8889986 45667777776643
No 185
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.2e-13 Score=133.15 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=133.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+ +|..|.|.+.+|+|.-||+.+++.+..+. ...+.++.++.+|.+. .++.|+.||.+..++...+.-+.-+.
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d--~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNID--SNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEec--CCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEee
Confidence 4788 55567788999999999999887665544 6678899999999887 78888899977777775222222233
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCC-------------c----------------------cee
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE-------------S----------------------EVS 125 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-------------~----------------------~~~ 125 (513)
+...++.|.+++|+|++..+++|+.||.|++||..+..-.. . +-.
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTF 229 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEE
Confidence 44667899999999999999999999999999986543221 1 223
Q ss_pred eeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010302 126 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 173 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg 173 (513)
|+.+.++.+..+..|.+.|.+++.++++.++.+++.|++|..|...+.
T Consensus 230 Wd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 230 WDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred EcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 667788888888889999999999999999999999999988877665
No 186
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.61 E-value=3.6e-14 Score=135.27 Aligned_cols=250 Identities=12% Similarity=0.098 Sum_probs=173.2
Q ss_pred CeEecCC--CEEEEEeCCCcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDG--LLCCSISNDKSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg--~~las~s~D~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
++|+|.- +++|+|..-|+|-+||+.+ .+.-....+..|.+.|..+.|+|.... .+.+.+.||+|+.-|++....+
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDGtiR~~D~~~~i~e 270 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDGTIRLQDFEGNISE 270 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCceeeeeeecchhhH
Confidence 4688853 6888888999999999952 222233445578889999999998775 6677788999999999754555
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQ 155 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~ 155 (513)
.+..+......+.++.|+.+...++.+..=|...+||+++.. .....+.-|+..|.+|+++|.. .+
T Consensus 271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~-------------s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG-------------SEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC-------------ccchhhhhhhcccceeecCCCCchh
Confidence 666665566677888998877777778777799999998832 3355566688899999999955 57
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
|||+|.|++.+|||++.-..... + -+..+ .....+.++.|+|+|--|+
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~s--------------p-~lst~-----------------~HrrsV~sAyFSPs~gtl~ 385 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKAS--------------P-FLSTL-----------------PHRRSVNSAYFSPSGGTLL 385 (498)
T ss_pred eeecccCcceeeeehhhhcCCCC--------------c-ceecc-----------------cccceeeeeEEcCCCCceE
Confidence 89999999999999986322110 0 00001 1123567889999887777
Q ss_pred Ecccc-ceEEEEcc----cCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCc
Q 010302 236 YATLL-GIKIVNLH----TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH 310 (513)
Q Consensus 236 ~~s~~-gi~v~d~~----t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~ 310 (513)
+.+.+ .|+|||.. .-....++.+..-..| -++-|+ ..|. +|..+|+.|--..
T Consensus 386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R--wlT~fK--------------------A~W~-P~~~li~vg~~~r 442 (498)
T KOG4328|consen 386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR--WLTPFK--------------------AAWD-PDYNLIVVGRYPR 442 (498)
T ss_pred eeccCCceEEeecccccccCCccceeeccCcccc--cccchh--------------------heeC-CCccEEEEeccCc
Confidence 66544 69999983 3344444433221222 222222 2353 5778888888888
Q ss_pred eEEEEecCC
Q 010302 311 RIYLFSRRE 319 (513)
Q Consensus 311 ~i~i~~~~~ 319 (513)
+|=||+-..
T Consensus 443 ~IDv~~~~~ 451 (498)
T KOG4328|consen 443 PIDVFDGNG 451 (498)
T ss_pred ceeEEcCCC
Confidence 888885443
No 187
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.3e-14 Score=129.34 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=140.0
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
|...+++|+-|+.|+.+|+.++..... ..|...+.++..++... .+++|+.|++|++||.+ ....+..+.. .
T Consensus 64 d~~~~~~G~~dg~vr~~Dln~~~~~~i---gth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R--~~~~~~~~d~-~ 135 (323)
T KOG1036|consen 64 DESTIVTGGLDGQVRRYDLNTGNEDQI---GTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPR--NKVVVGTFDQ-G 135 (323)
T ss_pred CCceEEEeccCceEEEEEecCCcceee---ccCCCceEEEEeeccCC--eEEEcccCccEEEEecc--cccccccccc-C
Confidence 345688999999999999998765443 45889999999987666 89999999999999998 4444444432 3
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc----ceeee-------------------------e-----cCC
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES----EVSFR-------------------------L-----KSD 131 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~-------------------------~-----~~~ 131 (513)
..|.++.. .++.|+.|..|..+.+||+++...|.. .+.+. + ...
T Consensus 136 kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 136 KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred ceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 37777765 678899999999999999998776631 11110 0 011
Q ss_pred ccccccccCC---------cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccc
Q 010302 132 TNLFEILKSK---------TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI 202 (513)
Q Consensus 132 ~~~~~~~~~~---------~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 202 (513)
...+.++.|. -+|++|+|+|--..||||+.||.|.+||+.+.+.++++...
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-------------------- 273 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-------------------- 273 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--------------------
Confidence 2334455453 25899999999999999999999999999998877766421
Q ss_pred cccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 203 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 203 ~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
...+.+++|+.+|..|+.++.
T Consensus 274 ----------------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 274 ----------------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ----------------CCceEEEEeccCCCeEEEEec
Confidence 123567899999999998764
No 188
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.57 E-value=5.6e-13 Score=133.10 Aligned_cols=256 Identities=13% Similarity=0.135 Sum_probs=172.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC--ceeEEEEcC---CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC-CCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY--DMMLMIRLP---FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR-ADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~--~~~~~~~l~---~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~-~~~ 74 (513)
+.|+|.+..|+++|.|+++.+|.-.+. --....++. +..++-....|++++. .+++-+..|..++|-.+ ...
T Consensus 273 v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--VIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--EEEEecccCcEEEEeccCccc
Confidence 468999999999999999999976543 333444433 2334567888999987 88888888999999832 112
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC--------------------CCCCCCccee---------
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH--------------------TLQFPESEVS--------- 125 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~--------------------~~~~~~~~~~--------- 125 (513)
..+...+.+|...|.+++|+|.|++|++.|.|.+-|++-.- ...+....+.
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence 23344456999999999999999999999999999987322 0000000000
Q ss_pred ---ee-------------------------------------------ec------------------------------
Q 010302 126 ---FR-------------------------------------------LK------------------------------ 129 (513)
Q Consensus 126 ---~~-------------------------------------------~~------------------------------ 129 (513)
|+ ..
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 00 00
Q ss_pred ---CCccccccccCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccc
Q 010302 130 ---SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-----RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 201 (513)
Q Consensus 130 ---~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 201 (513)
.-..++.+.+|.-.|++++.||+|+++|+++.. ..|++|+..+-...+.+.+|.
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs------------------ 572 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS------------------ 572 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc------------------
Confidence 011234556788899999999999999999853 468999988766665555443
Q ss_pred ccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcce
Q 010302 202 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKV 280 (513)
Q Consensus 202 ~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~ 280 (513)
..++.++|+|+|+||++.+.+ ...+|....+..- ..||-. .++.+.-
T Consensus 573 ------------------LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~--------e~~fa~-----~k~HtRI- 620 (764)
T KOG1063|consen 573 ------------------LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD--------EFRFAC-----LKAHTRI- 620 (764)
T ss_pred ------------------eEEEEEEECCCCcEEEEeecCceEEeeeeecccch--------hhhhcc-----ccccceE-
Confidence 134578999999999999876 4778877433211 112111 0111110
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 281 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.=+-+|+ +|..-|+|++.|+.+.+|.-.
T Consensus 621 ---------IWdcsW~-pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 621 ---------IWDCSWS-PDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ---------EEEcccC-cccceeEEecCCceEEEEecc
Confidence 1123453 778889999999999999543
No 189
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.57 E-value=2.1e-12 Score=124.71 Aligned_cols=241 Identities=14% Similarity=0.137 Sum_probs=168.7
Q ss_pred eEecCC-CEEEEEeCCCcEEEEEccCCceeEEEEc-C-CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 2 QVSVDG-LLCCSISNDKSVKIYDVVNYDMMLMIRL-P-FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 2 ~~s~dg-~~las~s~D~~v~iwd~~~~~~~~~~~l-~-~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
.|.|.+ +++++++ .+.+..|+.+++.+....-+ + .....+.+++|.++++ +++|..+|.|.||+.. ..+..
T Consensus 207 ~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~--~~~~~ 280 (626)
T KOG2106|consen 207 TFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKG--TNRIS 280 (626)
T ss_pred EeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCC--CceEE
Confidence 578855 5666665 57899999998766554322 1 2236799999999887 7889999999999986 66666
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecC-----CCCCCCCc----------------------ceeeeecCC
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP-----HTLQFPES----------------------EVSFRLKSD 131 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~-----~~~~~~~~----------------------~~~~~~~~~ 131 (513)
+....|.+.|.+++.-.+|.+| ||+.|..|..||- +.-++|+. ++.-..+.+
T Consensus 281 k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred eEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 7667999999999999998755 5999999999972 12223321 000011111
Q ss_pred ccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeee
Q 010302 132 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 211 (513)
Q Consensus 132 ~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e 211 (513)
. .....+|....+.++.+|+...+++++.|+.+++|+ ..+++.+..
T Consensus 360 f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~------------------------------- 405 (626)
T KOG2106|consen 360 F-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI------------------------------- 405 (626)
T ss_pred c-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-------------------------------
Confidence 1 123346888899999999999999999999999999 333322110
Q ss_pred eeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccccc
Q 010302 212 KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 290 (513)
Q Consensus 212 ~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
-..+..++.|+|+| .|+.++..| --|.|..+.+.+.+ ..+..++.+++.
T Consensus 406 ------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~y---------------------- 455 (626)
T KOG2106|consen 406 ------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVRY---------------------- 455 (626)
T ss_pred ------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-EecCCceEEEEE----------------------
Confidence 01233477899999 888888877 45778888655544 222223332222
Q ss_pred ccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 291 NESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 291 ~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+|+..+|-|+.|+.||||.-..
T Consensus 456 ------sp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 456 ------SPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred ------cCCCCEEEEecCCCeEEEEEECC
Confidence 38899999999999999997543
No 190
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=5.7e-15 Score=155.09 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=127.1
Q ss_pred CeEecCC-CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDG-LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg-~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
+.|++.+ ++||+|+.||.|.|||+.+.+.-...--...+..|.+++|...-.. +++|++.++.+.|||++ ..+++.
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr--~~~pii 198 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLR--KKKPII 198 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH-HhhccCCCCCceecccc--CCCccc
Confidence 4688865 5999999999999999986432222111124567888888765443 88999999999999998 557777
Q ss_pred EeecCC--CCeEEEEEcCCC-CEEEEEcCCC---cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 80 SKKVHM--GPVKVMRYNPVF-DTVISADDKG---IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 80 ~~~~h~--~~V~~l~~sp~~-~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
.+..|. ..+..++|+|+. ..+++++.|. .|.+||+|.- ..+++.+.+|...|.++.|++.+
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-------------ssP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-------------SSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-------------CCchhhhcccccceeeeccCCCC
Confidence 766444 357899999965 5666676554 5899998763 35677888999999999999966
Q ss_pred -CEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 154 -KQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 154 -~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
++|++++.|+.|.+|+..||+.+..+.
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecC
Confidence 788999999999999999999988764
No 191
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=2.9e-13 Score=122.39 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=113.6
Q ss_pred CeEecCCCEEEEEeC---C-------CcEEEEEccC-CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSVDGLLCCSISN---D-------KSVKIYDVVN-YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s~---D-------~~v~iwd~~~-~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd 69 (513)
+.|+++|++|+.-.. | +...||.++. ......+.+.. .+.|..++|+|+++.+.++.|..+..|.+||
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 469999988776543 2 2355555532 23344444432 3469999999999987778887888999999
Q ss_pred cCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC---CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 70 ARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 70 ~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
++ .+.+..+. ...+..+.|+|+|++|+.++.+ |.+.+||+++.+ .+.... | ..+..
T Consensus 90 ~~---~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--------------~i~~~~-~-~~~t~ 148 (194)
T PF08662_consen 90 VK---GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--------------KISTFE-H-SDATD 148 (194)
T ss_pred Cc---ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--------------Eeeccc-c-CcEEE
Confidence 94 66777664 5677899999999999988744 669999997632 233322 3 34789
Q ss_pred EEEcCCCCEEEEEeC------CCcEEEEEcCCCeEEEEe
Q 010302 147 IEVSPDGKQFSITSP------DRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 147 v~~spdg~~l~s~s~------D~~I~iwd~~tg~~~~~~ 179 (513)
++|||||++|++++. |+.++||++ +|+++...
T Consensus 149 ~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 149 VEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 999999999998773 789999998 57776654
No 192
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.57 E-value=1.9e-13 Score=131.39 Aligned_cols=277 Identities=12% Similarity=0.078 Sum_probs=181.9
Q ss_pred eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEE
Q 010302 14 SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRY 93 (513)
Q Consensus 14 s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~ 93 (513)
|...++++||+........+.-.-.+..+..+.|..... +.+++.+.|..+.+|.-....++.-..-+.....-.|++.
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~ 87 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC 87 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence 334579999998665544443222234488888877654 5677778899999997642222221111112224456666
Q ss_pred cCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010302 94 NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 173 (513)
Q Consensus 94 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg 173 (513)
.....++++|+..+.|+|||++. .-....++.|+..|+++.++-...+||+++..|.|.|-.+.++
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~--------------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRA--------------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred hhcceeeeccCcCceeeehhhHH--------------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 66778999999999999999975 2335567789999999999999999999999999999999887
Q ss_pred eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE-ccccc-eEEEEcccCc
Q 010302 174 KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY-ATLLG-IKIVNLHTNK 251 (513)
Q Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~-~s~~g-i~v~d~~t~~ 251 (513)
..-..+.. ..+..+..+.|+++.++++. ++++| |.+||...-.
T Consensus 154 ~~tt~f~~-----------------------------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 154 QKTTTFTI-----------------------------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred ccccceec-----------------------------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence 65444321 11223346679999998775 45666 8999996554
Q ss_pred EEEEeCC-CCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCcccCCCc
Q 010302 252 VSRILGK-VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGR 330 (513)
Q Consensus 252 ~v~~~g~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~~~~~~ 330 (513)
.+.-.-. |.-. ...+.|. +.++.||+|-+-|++||+|.-+..... .
T Consensus 199 p~~~~~~~HsAP-----------------~~gicfs----------psne~l~vsVG~Dkki~~yD~~s~~s~------~ 245 (673)
T KOG4378|consen 199 PIFHASEAHSAP-----------------CRGICFS----------PSNEALLVSVGYDKKINIYDIRSQAST------D 245 (673)
T ss_pred cccchhhhccCC-----------------cCcceec----------CCccceEEEecccceEEEeeccccccc------c
Confidence 4333221 1111 1112222 688999999999999999976643322 1
Q ss_pred CccCCCCCccccccccccCCCccCCCCCEEEEEeCCeEEE-EEeCCCCChHHHH
Q 010302 331 DIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIH-MKLYPEECPKTVE 383 (513)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~-i~l~~~~~P~~~~ 383 (513)
-+.-+.|-.. .+ -.....++...++.|+|+ -++....+|.++.
T Consensus 246 ~l~y~~Plst--va--------f~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 246 RLTYSHPLST--VA--------FSECGTYLCAGNSKGELIAYDMRSTKAPVAVR 289 (673)
T ss_pred eeeecCCcce--ee--------ecCCceEEEeecCCceEEEEecccCCCCceEe
Confidence 1222223210 01 112345788889999954 5788888998775
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=1.3e-13 Score=129.78 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=126.7
Q ss_pred CcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC-------CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEe
Q 010302 40 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-------NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW 112 (513)
Q Consensus 40 ~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-------~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw 112 (513)
.++..+.|...+.. .+++|+.|..|++|-+.... -+.+..+..|...|+++.|+|+|++|+||+.+|.+.+|
T Consensus 14 ~pv~s~dfq~n~~~-~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLN-KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CceEEEEeccCccc-ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45677777666554 89999999999999875211 12234566999999999999999999999999999999
Q ss_pred cCCCCCCC-Ccc-eeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHh
Q 010302 113 SPHTLQFP-ESE-VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQ 190 (513)
Q Consensus 113 d~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~ 190 (513)
-...-... ... .....+.-.....+.+|...|..++|+||++++++++-|..+++||+..|+.+..+++|...+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv---- 168 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV---- 168 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc----
Confidence 55421100 000 000000112234556788999999999999999999999999999999999999988765443
Q ss_pred cCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEE
Q 010302 191 RSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRI 255 (513)
Q Consensus 191 ~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~ 255 (513)
..++|||-+++++.-+.+- .+++.+...+++..
T Consensus 169 --------------------------------qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 169 --------------------------------QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred --------------------------------ceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 3556777777777655443 55555555444443
No 194
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.56 E-value=2.6e-13 Score=124.41 Aligned_cols=149 Identities=12% Similarity=0.181 Sum_probs=114.2
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEc---CCCCCcEEEEEEc---CCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRL---PFIPGAVEWVYKQ---GDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l---~~~~~~v~~v~~s---~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
+.+|+++ ..++.+|.....-.++.+.. +.++.....++|+ ..+++ +++.++.-|.|+|.|+. ++++...+
T Consensus 56 ~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p-~la~~G~~GvIrVid~~--~~~~~~~~ 131 (385)
T KOG1034|consen 56 QVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP-FLAAGGYLGVIRVIDVV--SGQCSKNY 131 (385)
T ss_pred ceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe-eEEeecceeEEEEEecc--hhhhccce
Confidence 5566665 45788898864332333321 2244444444554 33444 66666688999999998 88899999
Q ss_pred ecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc---ccCCcceEEEEEcCCCCEEE
Q 010302 82 KVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI---LKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~spdg~~l~ 157 (513)
.+|...|..+.++|+ .++++++|.|.+|++|++++.. ++..+ .+|...|.++.|+++|.+|+
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--------------Cv~VfGG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--------------CVAVFGGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--------------EEEEecccccccCcEEEEEEcCCCCeee
Confidence 999999999999995 5889999999999999998844 34443 46999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCe
Q 010302 158 ITSPDRRIRVFWFRTGK 174 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~ 174 (513)
+++.|.+|++|++...+
T Consensus 198 ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 198 SCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ccCCcceEEEEecChhH
Confidence 99999999999998544
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=4e-13 Score=122.94 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=160.3
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCc-eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec-CCCCCcceE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYD-MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA-RADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~-~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~-~~~~~~~i~ 79 (513)
+|++|++.+|.+-....|.||.....+ ......+..|...+..+.|.+..+ -+++|+.|..-++|.. ..+..++..
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCCCeeccce
Confidence 799999999999999999999998766 445555678999999999999988 7999999999999998 444567777
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+..+...++++.|+|..+.|++||....|.||-.+...-. -...+.-+.+.+.|.++.|+|++-.|++|
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW----------WVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW----------WVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce----------ehhhhhCCccccceeeeeccCCcceeccc
Confidence 77789999999999999999999999999999855431100 00011122366789999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccc--cCCCCCCceEEcCCCCEEEEc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK--TETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~--~~~~~~~~i~fd~~g~~li~~ 237 (513)
|.|+..|+|.. .++..++. + ....+|.++....-+.+ ........+.|+++|+.|++.
T Consensus 165 s~D~k~rVfSa----yIK~Vdek----------p------ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 165 STDGKCRVFSA----YIKGVDEK----------P------APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred ccCcceeEEEE----eeeccccC----------C------CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 99999999974 34433331 1 11122322222111111 223455678999999999998
Q ss_pred cccc-eEEEEcccC
Q 010302 238 TLLG-IKIVNLHTN 250 (513)
Q Consensus 238 s~~g-i~v~d~~t~ 250 (513)
..+. +.+.|....
T Consensus 225 ~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGP 238 (361)
T ss_pred cCCCceEEeecCCC
Confidence 7765 777776544
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.1e-13 Score=133.29 Aligned_cols=218 Identities=14% Similarity=0.188 Sum_probs=162.8
Q ss_pred eEecCCCEEEEEeCCCcEEEEEcc------CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC--
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVV------NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-- 73 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~------~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-- 73 (513)
+|.|-.-.|++|+.|+++++|++. ..+....+.+.+|.++|.++..+..++ .+.+|+.|++|+.|++...
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCceeeeeccCCCCC
Confidence 456666789999999999999993 234556677789999999999999988 8999999999999965310
Q ss_pred ------CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC-----CCc---ceeeeec----------
Q 010302 74 ------SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF-----PES---EVSFRLK---------- 129 (513)
Q Consensus 74 ------~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~-----~~~---~~~~~~~---------- 129 (513)
.......+.+|...|+.+++|+....|++++.||+++.|+...... +.. ...++..
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 1133445679999999999999999999999999999997643222 111 1112211
Q ss_pred ------------CCcccccccc-------CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHh
Q 010302 130 ------------SDTNLFEILK-------SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQ 190 (513)
Q Consensus 130 ------------~~~~~~~~~~-------~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~ 190 (513)
....+..+.. ....+.-+.++|.+.+..++-.|+.|+++|..+++.+.....|.
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~------- 531 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHK------- 531 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeecc-------
Confidence 1111111111 12447788999999999999999999999999999876543322
Q ss_pred cCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeC
Q 010302 191 RSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 257 (513)
Q Consensus 191 ~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g 257 (513)
..+++++++++|-+|+.++.++ +.+|.+....++...-
T Consensus 532 -----------------------------~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 532 -----------------------------DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred -----------------------------ceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 2456889999999999998776 8999998777776553
No 197
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.55 E-value=6.1e-13 Score=128.30 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=115.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++..|+...++||+.|+.+++|+ ..++.-...+ ..++.++.|.|.+ .++.|...|...+.|.. +...+.
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~e--~~~lv~- 442 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG---VVAVGTATGRWFVLDTE--TQDLVT- 442 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc---eEEEeeccceEEEEecc--cceeEE-
Confidence 35678889999999999999999 3455544443 3678888999987 67788888999999986 544444
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~ 159 (513)
+.....++++++|+|+|.+|+.|+.|+.|+||-+.... ....... .+..+|..+.||+|+++|.+.
T Consensus 443 ~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g-------------~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG-------------RKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC-------------cEEEEeeeecCceeEEeeecCCCceEEec
Confidence 33338899999999999999999999999999765421 1122222 244789999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 010302 160 SPDRRIRVFWFRT 172 (513)
Q Consensus 160 s~D~~I~iwd~~t 172 (513)
|.|-.|..|....
T Consensus 510 S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 510 SGDYEILYWKPSE 522 (626)
T ss_pred cCceEEEEEcccc
Confidence 9999999995433
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=5.3e-13 Score=136.70 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=131.6
Q ss_pred CeEecCCCEEEEEeCC---CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISND---KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D---~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
.+|||||++||.++.+ ..|++||+.+++......+. +....+.|+|+++. ++++.+.++.+.||.+....+ .
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~~~~~~wSPDG~~-La~~~~~~g~~~Iy~~d~~~~-~ 283 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GHNGAPAFSPDGSR-LAFASSKDGVLNIYVMGANGG-T 283 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC---CccCceeECCCCCE-EEEEEecCCcEEEEEEECCCC-C
Confidence 4799999999998754 36999999887654443333 34456899999984 333344566665554321133 3
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
...+..+...+.+..|+|+|+.|+.++ .++..+||++.... .....+ .+.. .+.+|||||++|
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~-------------~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG-------------GGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC-------------CCeEEe-cCCC--CCccCCCCCCEE
Confidence 455667777788999999999876544 67888888664311 111111 2332 457899999999
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
+..+.++ +.+||+.+++....... .....+.|+|+|++|++
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt~~--------------------------------------~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLSST--------------------------------------FLDESPSISPNGIMIIY 388 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEecCC--------------------------------------CCCCCceECCCCCEEEE
Confidence 8887765 55599988875422110 00124679999999999
Q ss_pred ccccc-eEEEEcc--cCcEEEEeCCCC
Q 010302 237 ATLLG-IKIVNLH--TNKVSRILGKVE 260 (513)
Q Consensus 237 ~s~~g-i~v~d~~--t~~~v~~~g~~~ 260 (513)
++..+ +++|.+. +|+.++.+..++
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEccCCC
Confidence 87654 6667653 577777775544
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.55 E-value=6.2e-14 Score=126.32 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=119.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce-eEEEEcC---CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM-MLMIRLP---FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~-~~~~~l~---~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
|.|.||+..||+-. |..|.+|++..... ...+... .+......-+|+|.-+...+++ ..|+++..||++ +.+
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~R--T~~ 204 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLR--TMK 204 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEcc--chh
Confidence 45889999998765 88999999987655 2222221 1233455667887433323333 457899999999 777
Q ss_pred ceEEee-cCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC-C
Q 010302 77 PLISKK-VHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-G 153 (513)
Q Consensus 77 ~i~~~~-~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g 153 (513)
+...+. .|...|..+.|+|+.+ +|++|+.||.|+|||.+..+ .+++++..|..+|+++.|+|. .
T Consensus 205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------------~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------------FPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------------ccccccCCCceEEEEEEecCccc
Confidence 766665 8888999999999876 56899999999999998743 567889999999999999994 5
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 010302 154 KQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~t 172 (513)
+++++++.|..|.+|...+
T Consensus 272 qLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASS 290 (370)
T ss_pred eEEEecCCCceeEEEeccc
Confidence 6778999999999998765
No 200
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=5.7e-13 Score=121.23 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=143.6
Q ss_pred CCCEEEEEeCCCcEEEEEccC-------CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC----CC
Q 010302 6 DGLLCCSISNDKSVKIYDVVN-------YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA----DS 74 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~-------~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~----~~ 74 (513)
-|+.+|+||.|++++||.-.. .+-+..-.+......+..++|.|....+.+++++.||.++||+... ..
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 499999999999999997621 1223333444566789999999999999999999999999998641 12
Q ss_pred CcceEEee-------cCCCCeEEEEEcCC---CCEEEEEcCC-----CcEEEecCCCCCCCCcceeeeecCCcccccccc
Q 010302 75 NEPLISKK-------VHMGPVKVMRYNPV---FDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 139 (513)
Q Consensus 75 ~~~i~~~~-------~h~~~V~~l~~sp~---~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (513)
....+.++ .+..+..|+.|+|. ..+|+.|+.+ +.+.||...... +.-..+.++..
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~----------rKw~kva~L~d 221 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG----------RKWLKVAELPD 221 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc----------ceeeeehhcCC
Confidence 33333343 57778899999983 4678877765 467888543311 01133556778
Q ss_pred CCcceEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee--e
Q 010302 140 SKTTVSAIEVSPDG----KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK--E 213 (513)
Q Consensus 140 ~~~~v~~v~~spdg----~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~--e 213 (513)
|..+|++++|.|+- ..||+++.|| |+||+++....-- ..+.. ..+. . -.++.++. +
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i-~~ee~-------~~~~--------~-~~~l~v~~vs~ 283 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI-EEEEV-------LAPD--------L-MTDLPVEKVSE 283 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh-hhhcc-------cCCC--------C-ccccceEEeee
Confidence 99999999999953 4789999999 9999987532110 11000 0000 0 01122332 1
Q ss_pred ccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcc
Q 010302 214 IEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 248 (513)
Q Consensus 214 ~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~ 248 (513)
+. ..+..+..+.|+-.|..|.+..++| +|+|-..
T Consensus 284 ~~-~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 284 LD-DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cc-CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 11 2234667889999999999888777 8888653
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.3e-13 Score=125.50 Aligned_cols=165 Identities=13% Similarity=0.227 Sum_probs=122.3
Q ss_pred eEec--CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC----CCeEEEEecCCCCC
Q 010302 2 QVSV--DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN----SSFVHIYDARADSN 75 (513)
Q Consensus 2 ~~s~--dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~----d~~I~iwd~~~~~~ 75 (513)
+|.. ....+.+|+.||+||+||++.......+....+++. ..+++...-+..+++.|.. +-.+.+||++.. .
T Consensus 77 rf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~-~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~-q 154 (376)
T KOG1188|consen 77 RFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT-PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE-Q 154 (376)
T ss_pred EEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC-cceEeeccCcCCeEEeccccccCceEEEEEEeccc-c
Confidence 4444 457789999999999999998887777776666632 2233333222226666543 677999999832 2
Q ss_pred cceEEe-ecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 76 EPLISK-KVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 76 ~~i~~~-~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
+++..+ ..|...|+++.|+| +.++|+|||.||.+.++|+.... ....+.....|...|.++.|+.++
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~-----------EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN-----------EEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc-----------chhhHHHhhcccceeeeeeeecCC
Confidence 324444 48999999999999 67899999999999999986532 145566666788889999999888
Q ss_pred -CEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 154 -KQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 154 -~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
+.|.+-+.+.+..+|+++.+.+...+
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcc
Confidence 45778889999999999998765444
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=3.5e-11 Score=119.27 Aligned_cols=251 Identities=12% Similarity=0.143 Sum_probs=149.5
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC---
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN--- 75 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~--- 75 (513)
+++||||++|++++ .++.|.+|++. ++.....-... ..+....+.++++++. ++++...++.|.+|++.. .+
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~-l~v~~~~~~~v~v~~~~~-~g~~~ 116 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRF-LFSASYNANCVSVSPLDK-DGIPV 116 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCE-EEEEEcCCCeEEEEEECC-CCCCC
Confidence 47899999987665 58899999996 33332222221 2345678999999884 344444588999999852 22
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEE-EcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVIS-ADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
+.+..+. +.....+++++|+++++++ ...++.|.+||+.+...... . ........ ....+..++|+|||+
T Consensus 117 ~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~------~-~~~~~~~~-~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 117 APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA------Q-EPAEVTTV-EGAGPRHMVFHPNQQ 187 (330)
T ss_pred Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc------c-CCCceecC-CCCCCceEEECCCCC
Confidence 2333332 3344677899999998854 55679999999866221100 0 00000111 123467899999999
Q ss_pred EEEEEeC-CCcEEEEEcCC--CeE--EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 155 QFSITSP-DRRIRVFWFRT--GKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 155 ~l~s~s~-D~~I~iwd~~t--g~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
++++++. +++|.+|++.. ++. +..+... +. .. ........+.++|
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~----------p~------------------~~--~~~~~~~~i~~~p 237 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM----------PA------------------DF--SDTRWAADIHITP 237 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC----------CC------------------cC--CCCccceeEEECC
Confidence 9987775 99999999973 332 2222100 00 00 0001123578999
Q ss_pred CCCEEEEccc--cceEEEEcccCc-EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEee
Q 010302 230 SSNFLIYATL--LGIKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCA 306 (513)
Q Consensus 230 ~g~~li~~s~--~gi~v~d~~t~~-~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~ 306 (513)
+|+++..+.. ..|.+|++.+.. .+..++...... ....+.+ .+....|+++.
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~---------------~p~~~~~----------~~dg~~l~va~ 292 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET---------------QPRGFNI----------DHSGKYLIAAG 292 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc---------------cCCceEE----------CCCCCEEEEEE
Confidence 9999888743 359999986542 333332211000 0001111 13455777777
Q ss_pred ecCceEEEEecC
Q 010302 307 FKRHRIYLFSRR 318 (513)
Q Consensus 307 ~~~~~i~i~~~~ 318 (513)
..++.|-+|...
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 778999999754
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.50 E-value=2.1e-11 Score=123.13 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=146.4
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCc-eeEEEEcCCCCCcEEEEEE-cCCCcceEEEEeCCCCeEEEEecCCCC-Ccce
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYD-MMLMIRLPFIPGAVEWVYK-QGDVKAGLAISDRNSSFVHIYDARADS-NEPL 78 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~-~~~~~~l~~~~~~v~~v~~-s~~~~~~~l~s~~~d~~I~iwd~~~~~-~~~i 78 (513)
.+++++..++.++.|+.+.+|+..... ....+... +...+..+.. .++....++..+..|+.+.+|+.. . ....
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~ 148 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS--TPGKLI 148 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc-CCCceeeEEEECCCcceEEeccCCCCccEEEEEec--CCCeEE
Confidence 467889999999999999999998775 44443321 1125555555 555553344445559999999996 4 5777
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcC-CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-EE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QF 156 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l 156 (513)
..+..|...|.+++|+|++..+++++. |+.+++|++.. ...+..+..|...+.+++|+|++. .+
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------------GKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--------------CceEEeeccCCCceEEEEEcCCcceEE
Confidence 888899999999999999999988886 99999999866 234556666999999999999998 55
Q ss_pred EEEeCCCcEEEEEcCCCeEEE-EecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRR-VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
++++.|+.|++||..++..+. .+..+.. .. ...|++++++++
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~------------------------------------~~-~~~~~~~~~~~~ 257 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSD------------------------------------SV-VSSFSPDGSLLA 257 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCc------------------------------------ce-eEeECCCCCEEE
Confidence 555899999999988777766 3332210 00 116888988777
Q ss_pred Eccccc-eEEEEcccCcE
Q 010302 236 YATLLG-IKIVNLHTNKV 252 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~ 252 (513)
.++.++ +++|+......
T Consensus 258 ~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EecCCCcEEEeeecCCCc
Confidence 666554 99999986664
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.6e-14 Score=132.22 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=152.1
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
+|||+|+++|++++- .+.|-|.++.+..+.+.. -..+..+-|..++.. +++....++.|.+|++. +.+-...+
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---ldki~yieW~ads~~-ilC~~yk~~~vqvwsl~--Qpew~ckI 87 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLV--QPEWYCKI 87 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH---HHHhhheeeecccee-eeeeeeccceEEEEEee--cceeEEEe
Confidence 699999999999865 788999988766544332 235667777776653 66677789999999997 77778888
Q ss_pred ecCCCCeEEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 82 KVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+....++.++.|||+|+.+ .+...+-.|.+|.+.+.+ ...+...+..+..++|+|||++.+..+
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---------------~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---------------GYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---------------eEEecccccCceeEEECCCCceeeeee
Confidence 8889999999999999665 556678889999987732 233333344568899999999998877
Q ss_pred CCCc---EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccc--cccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 161 PDRR---IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR--LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 161 ~D~~---I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~--l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
.-.. +.|..-..-.+++.++-....++.+.|+++.-.. .++.-.-+.++.|+ ...+..+.|+|.++||+
T Consensus 153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------~lG~k~v~wsP~~qfla 226 (447)
T KOG4497|consen 153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------GLGLKFVEWSPCNQFLA 226 (447)
T ss_pred cccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee------ccceeEEEeccccceEE
Confidence 4211 2222112222333333333344555666552221 11111112223333 23456889999999999
Q ss_pred Eccccc-eEEEEcccCcEEEEeC
Q 010302 236 YATLLG-IKIVNLHTNKVSRILG 257 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g 257 (513)
.|++++ ++|.|-.+-+.+..++
T Consensus 227 vGsyD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 227 VGSYDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred eeccchhhhhhceeeeeehhhhc
Confidence 999987 7888877766655554
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.50 E-value=9.5e-13 Score=130.71 Aligned_cols=261 Identities=13% Similarity=0.188 Sum_probs=180.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|-|||..|+.+. +..+.+||...|.....++ +|...+.+++|+.+++ .++||+.|+.+.+|..+ .+-+..
T Consensus 18 ~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLK--gHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k---lEG~Lk 89 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLK--GHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK---LEGILK 89 (1081)
T ss_pred eEECCCCceEEEec-CCEEEEEeCCCcccccccc--cccceEEEEEEccCCc--eeccCCCceeEEEeccc---ccceee
Confidence 58999998877655 4578999999988877755 9999999999999999 99999999999999874 122222
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
. .|.+.|.|+.|+|-...|+|++-.. .-+|..... .+.. ......+.+++|..||++|+.|-
T Consensus 90 Y-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK---------------~V~K-~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 90 Y-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQK---------------SVSK-HKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred e-ccCCeeeEeecCchHHHhhhcchhh-ccccChhhh---------------hHHh-hhhheeEEEeeecCCCcEEEEec
Confidence 2 6999999999999999999998553 557866441 1111 12345688999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEec---ccHHHHHHHhcCCCCccc----cccccccceeeeee----ecc--ccCCCCCCceEE
Q 010302 161 PDRRIRVFWFRTGKLRRVYD---ESLEVAQDLQRSDAPLYR----LEAIDFGRRMAVEK----EIE--KTETAPPSNAIF 227 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~---~~~~~i~~~~~~~~~~~~----l~~~~~~~r~~~e~----e~~--~~~~~~~~~i~f 227 (513)
.||+|.|=+ ++|+.--.++ +....+-++++++.+... +.-.|+++.+.... .|+ ...+-.+.++.|
T Consensus 152 ~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 152 FNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred cCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhee
Confidence 999999965 4454433333 345566677776653322 22335555544321 222 233456778999
Q ss_pred cCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEee
Q 010302 228 DESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCA 306 (513)
Q Consensus 228 d~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~ 306 (513)
-++|.|++.|..++ ++++- ..|-.+.++|..+. +..+ +.. .|++.-++-|
T Consensus 231 f~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~----WIWt-------------V~~-----------~PNsQ~v~~G 281 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDS----WIWT-------------VQA-----------KPNSQYVVVG 281 (1081)
T ss_pred ccCCcEEEEccCCCceEEEe-ecCeEEeeccccce----eEEE-------------EEE-----------ccCCceEEEE
Confidence 99999999876554 55554 35666667665441 1111 111 2566667888
Q ss_pred ecCceEEEEec
Q 010302 307 FKRHRIYLFSR 317 (513)
Q Consensus 307 ~~~~~i~i~~~ 317 (513)
--||.|-.|+-
T Consensus 282 CqDGTiACyNl 292 (1081)
T KOG1538|consen 282 CQDGTIACYNL 292 (1081)
T ss_pred EccCeeehhhh
Confidence 88888877654
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.50 E-value=1.8e-13 Score=135.05 Aligned_cols=156 Identities=11% Similarity=0.123 Sum_probs=121.9
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCcee-----EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMM-----LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~-----~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
+.|.| |.+.||.+++||.|++|.+..+.+. ....+..|...|+++.|+|-... ++++++.|.+|++||++ +
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl~--~ 709 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDLA--N 709 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeehh--h
Confidence 35777 7789999999999999998765432 22234578889999999987654 77888899999999998 8
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccC-CcceEEEEEcCCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS-KTTVSAIEVSPDG 153 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~spdg 153 (513)
.+....+.+|++.|.+++|||+|+.+++.+.||+|+++..++.+ +++++-.+. ...--.+.|.-||
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-------------~pv~Eg~gpvgtRgARi~wacdg 776 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-------------QPVYEGKGPVGTRGARILWACDG 776 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-------------CccccCCCCccCcceeEEEEecC
Confidence 88888999999999999999999999999999999999998754 333333331 1223457777799
Q ss_pred CEEEEEeCC----CcEEEEEcCC
Q 010302 154 KQFSITSPD----RRIRVFWFRT 172 (513)
Q Consensus 154 ~~l~s~s~D----~~I~iwd~~t 172 (513)
+++++.+-| ..|.+||..+
T Consensus 777 r~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 777 RIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cEEEEecccccchhhhhhhhhhh
Confidence 998877644 4677777654
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.2e-13 Score=132.46 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=128.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD------- 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~------- 73 (513)
++|+.||.+||+||+|-.+.|||....++++.+. .+|...|.++.|.|....-++++|+.|..|+++|+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~ 134 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH 134 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc
Confidence 5799999999999999999999999888877766 56888999999999888889999999999999999621
Q ss_pred -CCcceEEeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCC-CCCcceeeeecCCccccccc---cCCcceEEE
Q 010302 74 -SNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQ-FPESEVSFRLKSDTNLFEIL---KSKTTVSAI 147 (513)
Q Consensus 74 -~~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v 147 (513)
-.+..+.+.+|...|..++-.|++ +.+.++++||+|+-+|++... ++.. ..+...+. ..--...|+
T Consensus 135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~--------~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD--------EDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc--------ccccHHHHHhchhhheeeee
Confidence 124455566999999999999987 889999999999999997621 1111 11222222 222346789
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEEcC
Q 010302 148 EVSPDG-KQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 148 ~~spdg-~~l~s~s~D~~I~iwd~~ 171 (513)
..||.. .+|++|+.|-..++||.+
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhh
Confidence 999955 588999999999999953
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=6.9e-13 Score=125.75 Aligned_cols=197 Identities=13% Similarity=0.086 Sum_probs=140.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|+.||..||+++.||++|||++.+... .+....|.+.|..+.|+|+++ ++++-+.| ..+||+.+ ++.++..
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~--~g~~~a~ 222 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVN--TGAALAR 222 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEec--cCchhhh
Confidence 58999999999999999999999875443 344557889999999999999 88888888 89999998 6666665
Q ss_pred ee--cCCCCeEEEEEcCCC---C--EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 81 KK--VHMGPVKVMRYNPVF---D--TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 81 ~~--~h~~~V~~l~~sp~~---~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
.. ........+.|+.+. . .+++...-+.|+.|++..... + + --...+...-...|++++.|+||
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-------~-~-~l~~~~~~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-------S-N-FLRLRKKIKRFKSISSLAVSDDG 293 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-------c-c-ccchhhhhhccCcceeEEEcCCC
Confidence 54 223345677787766 3 334444556677776643221 0 0 01112222233469999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
+++|.|+.||.|-|++..+.++++...... ..-++.+.|+|+.++
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~~~vk~aH-----------------------------------~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRLQYVKEAH-----------------------------------LGFVTGLTFSPDSRY 338 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeeeEeehhhh-----------------------------------eeeeeeEEEcCCcCc
Confidence 999999999999999999988877654311 123567788998888
Q ss_pred EEEcccc-ceEEEEcc
Q 010302 234 LIYATLL-GIKIVNLH 248 (513)
Q Consensus 234 li~~s~~-gi~v~d~~ 248 (513)
++.-+.+ ++.|.-+.
T Consensus 339 ~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 339 LASVSSDNEAAVTKLA 354 (398)
T ss_pred ccccccCCceeEEEEe
Confidence 8875544 45555543
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=4e-12 Score=114.98 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=110.1
Q ss_pred EEEEEEcCCCcceEEEEeCC--------CCeEEEEecCCCCCcceEEee-cCCCCeEEEEEcCCCCEEEEE--cCCCcEE
Q 010302 42 VEWVYKQGDVKAGLAISDRN--------SSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISA--DDKGIIE 110 (513)
Q Consensus 42 v~~v~~s~~~~~~~l~s~~~--------d~~I~iwd~~~~~~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~--s~dg~i~ 110 (513)
-..+.|++.++.+++.+... -+...+|.++. ...++..+. ...++|.+++|+|+|+.|+.. ..+..+.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~-~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE-KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec-CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45567888887654444311 12355555532 234455554 345579999999999987544 4677899
Q ss_pred EecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeEEEEecccHHHHH
Q 010302 111 YWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP---DRRIRVFWFRTGKLRRVYDESLEVAQ 187 (513)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~---D~~I~iwd~~tg~~~~~~~~~~~~i~ 187 (513)
+||++. +.+..+ +...++.+.|||+|++|++++. .|.|.+||.++.+.+.+.+.
T Consensus 87 lyd~~~---------------~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~------ 143 (194)
T PF08662_consen 87 LYDVKG---------------KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH------ 143 (194)
T ss_pred EEcCcc---------------cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc------
Confidence 999853 233444 3456789999999999999874 46799999998888766532
Q ss_pred HHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc-------cceEEEEcccCcEEEEeC
Q 010302 188 DLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-------LGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~-------~gi~v~d~~t~~~v~~~g 257 (513)
...+.+.|||+|+++++++. .+++||+. +|+.+....
T Consensus 144 --------------------------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 144 --------------------------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred --------------------------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 12357899999999998753 36999998 577666543
No 210
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=3e-11 Score=122.03 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=149.4
Q ss_pred ecCCC-EEEEEeC-CCcEEEEEccC-CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-CCeEEEEecCCCCCcceE
Q 010302 4 SVDGL-LCCSISN-DKSVKIYDVVN-YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-SSFVHIYDARADSNEPLI 79 (513)
Q Consensus 4 s~dg~-~las~s~-D~~v~iwd~~~-~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-d~~I~iwd~~~~~~~~i~ 79 (513)
++++. +++..+. |+.+++|+... ...... +..|...+..+.+++++. .+++++. ++.+++|++. ....+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~ 192 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--LEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLR--TGKPLS 192 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEE--EecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcC--CCceEE
Confidence 56776 5555455 99999999986 444444 347888899999999998 6777775 9999999997 677888
Q ss_pred EeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc-ccccCCcceEEEEEcCCCCEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF-EILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~ 157 (513)
.+.+|...|.+++|+|++. .+++++.|+.+++||... +..+. .+..|.... ...|+|++.+++
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 257 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST--------------GKLLRSTLSGHSDSV-VSSFSPDGSLLA 257 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC--------------CcEEeeecCCCCcce-eEeECCCCCEEE
Confidence 8889999999999999998 556669999999997764 23333 466676665 448999999999
Q ss_pred EEeCCCcEEEEEcCCCeE-EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 158 ITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
+++.|+.+++|+.+.... +..+..| ...+..+.|+|++..+++
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSGH------------------------------------SSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEecC------------------------------------CccEEEEEECCCCCEEEE
Confidence 999999999999987654 3322111 123345689988888887
Q ss_pred ccccc-eEEEEcccCcEEEEeC
Q 010302 237 ATLLG-IKIVNLHTNKVSRILG 257 (513)
Q Consensus 237 ~s~~g-i~v~d~~t~~~v~~~g 257 (513)
++.++ +++|+..++.......
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEee
Confidence 65554 8999998887776654
No 211
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.48 E-value=1.4e-12 Score=117.74 Aligned_cols=239 Identities=13% Similarity=0.151 Sum_probs=154.4
Q ss_pred CCEEEEEeC----CCcEEEEEcc--CCceeEEEEcCCCCCcEEEEEEcCCCcc---eEEEEeCCCCeEEEEecCCCCCc-
Q 010302 7 GLLCCSISN----DKSVKIYDVV--NYDMMLMIRLPFIPGAVEWVYKQGDVKA---GLAISDRNSSFVHIYDARADSNE- 76 (513)
Q Consensus 7 g~~las~s~----D~~v~iwd~~--~~~~~~~~~l~~~~~~v~~v~~s~~~~~---~~l~s~~~d~~I~iwd~~~~~~~- 76 (513)
+.+||.||. .+.|.|-.+. +++.+..-.+ .|+.++..+.|.|+... -++++++. .+++|.+..+..+
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~ 135 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRV 135 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCC-CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCce
Confidence 457888873 3556665443 4444333322 37788889999988742 26666554 7999998622221
Q ss_pred -ceEEe-----ecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEE
Q 010302 77 -PLISK-----KVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV 149 (513)
Q Consensus 77 -~i~~~-----~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (513)
+...+ ..+.+++++..|+. +.+++.++|-|-+..|||++++.. +....++..|...|..++|
T Consensus 136 ~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-----------~~vkTQLIAHDKEV~DIaf 204 (364)
T KOG0290|consen 136 ELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-----------GTVKTQLIAHDKEVYDIAF 204 (364)
T ss_pred ehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------cceeeEEEecCcceeEEEe
Confidence 11111 15668999999997 788999999999999999987421 2334567789999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEc
Q 010302 150 SPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 228 (513)
Q Consensus 150 spdg~-~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd 228 (513)
...+. .||+.+.||.+|+||++..+.-..+-+.- .+..+++ -++|+
T Consensus 205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p-------~~~~pLl--------------------------RLswn 251 (364)
T KOG0290|consen 205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP-------SPSTPLL--------------------------RLSWN 251 (364)
T ss_pred ccCccceEEEecCCCcEEEEEecccccceEEecCC-------CCCCcce--------------------------eeccC
Confidence 98664 78899999999999998855433222110 0111222 22333
Q ss_pred CCC-CEEEEcccc--ceEEEEcc-cCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEE
Q 010302 229 ESS-NFLIYATLL--GIKIVNLH-TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLC 304 (513)
Q Consensus 229 ~~g-~~li~~s~~--gi~v~d~~-t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (513)
++. +|++.-.++ .|.|+|+. ....+..+..|. ...+..+|.+..+.-+|
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~---------------------------a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ---------------------------ASVNGIAWAPHSSSHIC 304 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc---------------------------ccccceEecCCCCceee
Confidence 322 344333222 46666764 223333333333 33677789999999999
Q ss_pred eeecCceEEEEecCC
Q 010302 305 CAFKRHRIYLFSRRE 319 (513)
Q Consensus 305 s~~~~~~i~i~~~~~ 319 (513)
|+++|....||.-..
T Consensus 305 taGDD~qaliWDl~q 319 (364)
T KOG0290|consen 305 TAGDDCQALIWDLQQ 319 (364)
T ss_pred ecCCcceEEEEeccc
Confidence 999999999997654
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.7e-12 Score=120.10 Aligned_cols=250 Identities=13% Similarity=0.093 Sum_probs=164.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC------CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN------YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~------~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
+.||.+|++||+|++|..+++|++.. .+++..+. ..|...|.++.|..... ++.+|..+++|...|+. +
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-~~H~SNIF~L~F~~~N~--~~~SG~~~~~VI~HDiE--t 136 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-HPHRSNIFSLEFDLENR--FLYSGERWGTVIKHDIE--T 136 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-CccccceEEEEEccCCe--eEecCCCcceeEeeecc--c
Confidence 57999999999999999999999863 23333322 23446788888877766 99999999999999997 6
Q ss_pred CcceEEee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 75 NEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 75 ~~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.+.+..+. ...+.|..+..+|..+.|++.+.++.|.+||.+...-|.. +.-+........++-|+|-
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~-----------~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS-----------LVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc-----------eeeecCCCccceeeeecCC
Confidence 66666654 3345899999999999999999999999999987442211 2222334455788999996
Q ss_pred C-CEEEEEeCCCcEEEEEcCCCeE-EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 153 G-KQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 153 g-~~l~s~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
. .+|++.+..+-+.+||.+..+. +..+.+ . .-+. ..+..+..+.|+++
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~------------~-----------~~L~-------~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSM------------F-----------KGLP-------QENTEWMGSLWSPS 255 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhc------------c-----------ccCc-------ccchhhhheeeCCC
Confidence 5 5778888899999999875332 111110 0 0000 11234567889999
Q ss_pred CCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 010302 231 SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 231 g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~ 309 (513)
|+.++.--... --.+|+.+.+|. ++..+.+..-+.+... +....+ -+..-++||+++
T Consensus 256 G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T---------~KS~~F------------~~D~~v~tGSD~ 313 (609)
T KOG4227|consen 256 GNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKT---------IKSMTF------------IDDYTVATGSDH 313 (609)
T ss_pred CCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeee---------eeeeee------------ecceeeeccCcc
Confidence 99777554332 346777765543 3322221222222211 111111 122229999999
Q ss_pred ceEEEEecC
Q 010302 310 HRIYLFSRR 318 (513)
Q Consensus 310 ~~i~i~~~~ 318 (513)
=.||||.-.
T Consensus 314 ~~i~~WklP 322 (609)
T KOG4227|consen 314 WGIHIWKLP 322 (609)
T ss_pred cceEEEecC
Confidence 999999744
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=5.2e-12 Score=117.87 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=136.9
Q ss_pred EEEEEeCC--CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee---c
Q 010302 9 LCCSISND--KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK---V 83 (513)
Q Consensus 9 ~las~s~D--~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~---~ 83 (513)
++|..+.+ +.+++.+++.+..++.+. .+..+.++.+... -++.+-.+ .|.|||++ +.++++++. .
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~---fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~--~MklLhTI~t~~~ 127 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF---FPTSILAVRMNRK----RLVVCLEE-SIYIYDIK--DMKLLHTIETTPP 127 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe---cCCceEEEEEccc----eEEEEEcc-cEEEEecc--cceeehhhhccCC
Confidence 44444433 458888888777777766 3477888877543 33333333 39999998 889988876 4
Q ss_pred CCCCeEEEEEcCCCCEEEEEc--CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 84 HMGPVKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
+...+.++++++.+.+++--+ ..|.|.+||+.+ -+....+..|++.+-+++|+|+|.+|||+|.
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--------------l~~v~~I~aH~~~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--------------LQPVNTINAHKGPLAALAFSPDGTLLATASE 193 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEccc--------------ceeeeEEEecCCceeEEEECCCCCEEEEecc
Confidence 555677777777778887543 467899999876 3456778899999999999999999999998
Q ss_pred CCc-EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 162 DRR-IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 162 D~~-I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|+ ||||.+.+|+.+..+.-... .....+++|+++++||++.+..
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~~----------------------------------~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGTY----------------------------------PVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCce----------------------------------eeEEEEEEECCCCCeEEEecCC
Confidence 886 69999999999888753110 0123478999999999987654
Q ss_pred -ceEEEEcccC
Q 010302 241 -GIKIVNLHTN 250 (513)
Q Consensus 241 -gi~v~d~~t~ 250 (513)
.|+|+-+.+-
T Consensus 240 eTVHiFKL~~~ 250 (391)
T KOG2110|consen 240 ETVHIFKLEKV 250 (391)
T ss_pred CeEEEEEeccc
Confidence 5999988653
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=6.1e-14 Score=142.32 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=164.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|...|.++++|++|..|+||..++..+... +.+|.+.+..++.+.... ++++++.|..|++|-+. .+.++..+
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWrl~--~~~pvsvL 270 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLAS--CRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWRLP--DGAPVSVL 270 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhcc--CCCCccccchhccchhhh--hhhhcccCceEEEEecC--CCchHHHH
Confidence 4778899999999999999999998877665 448999999888776655 89999999999999998 99999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+|++.|++++|+|-. +.+.||++++||.+-.-. .|. ..++ .+ ..+..+.++.|...+..++|++.
T Consensus 271 rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~-----~y~---prp~-~~-~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 271 RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPR-----IYV---PRPL-KF-TEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred hccccceeeeccCccc----cCCCCCceEecccccccc-----ccC---CCCC-Cc-ccccceeeeeccccccccccccC
Confidence 9999999999999964 788999999999861000 000 0000 01 12245778888889999999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEc-CCCCEEEEc-cc
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD-ESSNFLIYA-TL 239 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd-~~g~~li~~-s~ 239 (513)
|+.-+.|.+.-..+ ....+. .+.++ ....+.+.+ +.
T Consensus 337 d~ea~n~e~~~l~~----------------~~~~li--------------------------f~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW----------------RSNLLI--------------------------FVTRSSDLSSIVVTARND 374 (1113)
T ss_pred CcccccchhhHhhh----------------hccceE--------------------------EEeccccccccceeeeee
Confidence 99988887543111 000000 00000 011233333 33
Q ss_pred cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 240 LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 240 ~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
..+++||+.+|+.++.++++.- .+..++.| +.||.+..+++-|+...||+-.+
T Consensus 375 ~~~~vwnl~~g~l~H~l~ghsd-----------------~~yvLd~H----------pfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLMGHSD-----------------EVYVLDVH----------PFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred eEeeeeecccchhhhhhccccc-----------------ceeeeeec----------CCCcHhhhhccCCCceEeeeccc
Confidence 4589999999999988876541 12233333 78999999999999999998654
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.47 E-value=3.6e-13 Score=130.64 Aligned_cols=203 Identities=11% Similarity=0.039 Sum_probs=160.0
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCC
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP 87 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~ 87 (513)
..|+.++.||.+.|.+-. ++.... +..|.+.+.+-.|++++. -+++.++||.|++|.- ++-...++.....+
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE~s--v~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSr---sGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVERS--ISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSR---SGMLRSTVVQNEES 147 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhhhh--hhhhhhhhhhcccCCCCc--eeeeecCCceEEEEec---cchHHHHHhhcCce
Confidence 567888999999988753 333333 457889999999999999 7889999999999986 55555556677789
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 010302 88 VKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRV 167 (513)
Q Consensus 88 V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~i 167 (513)
|.|++|.|+.+.++-+-.+ .+.|=.+.. ...+.....|.+-|.++.|+|....+++|+.|-..+|
T Consensus 148 v~c~~W~p~S~~vl~c~g~-h~~IKpL~~--------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGG-HISIKPLAA--------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred eEEEEECCCCCceEEecCC-eEEEeeccc--------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEe
Confidence 9999999988777655544 344444432 3446677889999999999999999999999999999
Q ss_pred EEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 168 FWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 168 wd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
||. .|+.+.+-..|.-+++++.|.++..|.+.+...-| ++++....+.+++|+++|..++.++..|
T Consensus 213 WD~-~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R-------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 213 WDA-QGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR-------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred ecc-cCcccccCChhccceeeeeeccccceeeeeeeeee-------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 995 56777776777778999999998777776655444 4556667888999999999999998776
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.1e-11 Score=124.78 Aligned_cols=200 Identities=15% Similarity=0.089 Sum_probs=128.7
Q ss_pred CeEecCCCEEEEEeC---CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe-CCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISN---DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD-RNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~---D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~-~~d~~I~iwd~~~~~~~ 76 (513)
.+|||||+.||..+. +..+.+|++.+++......+ ++....+.|+|+++.++++.. ..+..|.+||+. +++
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~--tg~ 278 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA--SGQ 278 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC--CCC
Confidence 379999999997653 45799999988775444332 344556899999985433322 223468899986 444
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcC-CCcEEEe--cCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADD-KGIIEYW--SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
. ..+..+...+....|+|+|+.|+..+. ++..++| |+.+++ ...+..+.......+|||||
T Consensus 279 ~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---------------~~~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 279 I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---------------PQRITWEGSQNQDADVSSDG 342 (429)
T ss_pred E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---------------eEEeecCCCCccCEEECCCC
Confidence 3 444445567789999999998876664 4555555 444321 22232333445678999999
Q ss_pred CEEEEEeCC---CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 154 KQFSITSPD---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 154 ~~l~s~s~D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++|+..+.+ ..|.+||+.+++.. .+... .......|+|+
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-------------------------------------~~~~~p~~SpD 384 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-------------------------------------FLDETPSIAPN 384 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EeCCC-------------------------------------CCCCCceECCC
Confidence 999876643 35888898887643 22110 01124579999
Q ss_pred CCEEEEccccc----eEEEEcccCcEEEEeCCCC
Q 010302 231 SNFLIYATLLG----IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 231 g~~li~~s~~g----i~v~d~~t~~~v~~~g~~~ 260 (513)
|++|++.+..+ +.++++ +|+..+.+..++
T Consensus 385 G~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~ 417 (429)
T PRK03629 385 GTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD 417 (429)
T ss_pred CCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC
Confidence 99999988654 566777 444445454333
No 217
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.44 E-value=1.5e-12 Score=117.54 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=124.1
Q ss_pred eEec--CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSV--DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~--dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
+||| ||+.+++.+ |+++..||+++.+....+. ..|...+..+.|.|.-+ .++++|+.|+.|++||.+ ....++.
T Consensus 177 ~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R-~tk~pv~ 252 (370)
T KOG1007|consen 177 AWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTR-KTKFPVQ 252 (370)
T ss_pred ccCCCCccceEEEeC-CCcEEEEEccchhhhcchh-hhhcceeeeccCCCCce-EEEEEcCCCccEEEEecc-CCCcccc
Confidence 4777 888888765 8999999999877665554 45777789999988755 489999999999999998 3567889
Q ss_pred EeecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCC-CCCcceeeeec----------------CCccccccccCC
Q 010302 80 SKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQ-FPESEVSFRLK----------------SDTNLFEILKSK 141 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~ 141 (513)
.+.+|.-.|+++.|+|. .+++++++.|..|.+|....-. .+ .+.+.-+ ....+.++..|.
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~--qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ--QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc--ccccccccccCcchhhHHhcccccccccccccccc
Confidence 99999999999999995 5677899999999999543211 00 0111100 122344667799
Q ss_pred cceEEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 010302 142 TTVSAIEVSPDGK-QFSITSPDRRIRVFWFR 171 (513)
Q Consensus 142 ~~v~~v~~spdg~-~l~s~s~D~~I~iwd~~ 171 (513)
..|++++||.-.. .||+-|+||.+.|=.+.
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999999998655 56788899999886543
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.8e-11 Score=125.21 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=127.2
Q ss_pred CeEecCCCEEEEEeCC---CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISND---KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D---~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
.+|||||+.||..+.+ ..|.+||+.+++...... .++......|+|+++. ++++.+.++...||.+....+ .
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~-~ 275 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN---FKGSNSAPAWSPDGRT-LAVALSRDGNSQIYTVNADGS-G 275 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec---CCCCccceEECCCCCE-EEEEEccCCCceEEEEECCCC-C
Confidence 3799999999988753 359999999887644322 3355668899999985 344556667766665532233 3
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
...+..+........|+|||+.|+..+ .++...+|.+.... +. ...+..+.......+|||||++|
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~------------g~-~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG------------GA-AQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC------------Cc-eEEEecCCCCcCceEECCCCCEE
Confidence 555656666667889999999887655 35666777442110 11 11111122233467899999999
Q ss_pred EEEeCCC---cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 157 SITSPDR---RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 157 ~s~s~D~---~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
+..+.++ .|.+||+.+++....... .......|+|+|++
T Consensus 343 a~~s~~~g~~~I~v~d~~~g~~~~lt~~--------------------------------------~~~~~p~~spdg~~ 384 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATGQVTALTDT--------------------------------------TRDESPSFAPNGRY 384 (427)
T ss_pred EEEEccCCcEEEEEEECCCCCeEEccCC--------------------------------------CCccCceECCCCCE
Confidence 8777544 699999988765322110 01135689999999
Q ss_pred EEEccccc----eEEEEcccCcEEEEe
Q 010302 234 LIYATLLG----IKIVNLHTNKVSRIL 256 (513)
Q Consensus 234 li~~s~~g----i~v~d~~t~~~v~~~ 256 (513)
|++.+..+ +.+.+. +|+..+.+
T Consensus 385 l~~~~~~~g~~~l~~~~~-~g~~~~~l 410 (427)
T PRK02889 385 ILYATQQGGRSVLAAVSS-DGRIKQRL 410 (427)
T ss_pred EEEEEecCCCEEEEEEEC-CCCceEEe
Confidence 99987553 555566 45544444
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2e-12 Score=124.40 Aligned_cols=309 Identities=14% Similarity=0.145 Sum_probs=195.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc--e
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP--L 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~--i 78 (513)
|.|+..|..|+|+|.|..|.+||+..+.....+. .+|...+....|.|.....-+++++.||++++=.+.. ++.+ .
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~-t~~~e~t 225 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE-TGYVENT 225 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeeeecc-ccceecc
Confidence 4688899999999999999999998776544432 3455555555677777766899999999999887642 2222 3
Q ss_pred EEeecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCc---ceEEEEEcCCC
Q 010302 79 ISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKT---TVSAIEVSPDG 153 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~v~~v~~spdg 153 (513)
..+..|.++|..++.-|+ ...|.|++.|+.+.-+|+++... ........ +.. ..++++..|..
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p------------a~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP------------AEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCc------------cceeeeeccCCccceeeeeEecCCCC
Confidence 445589999999999995 56789999999999899877432 11111222 222 46789999966
Q ss_pred C-EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 154 K-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 154 ~-~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
. .+++++.|..+|+||.+.-..- +....+..++. +.+.......++.++|+.++.
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e----~~n~~~~~f~p--------------------~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKE----ENNGVLDKFCP--------------------HHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred ccccccCChhhhhhhhcccchhhc----cccchhhhcCC--------------------ccccccCcccceeEEecCCcc
Confidence 5 8899999999999997653221 00111111111 011112234567899996666
Q ss_pred EEEEc-cccceEEEEcccCcEEEEeCCC--Ccc-chhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeec
Q 010302 233 FLIYA-TLLGIKIVNLHTNKVSRILGKV--ENN-DRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFK 308 (513)
Q Consensus 233 ~li~~-s~~gi~v~d~~t~~~v~~~g~~--~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~ 308 (513)
-|+.+ +...|.+++-.-+. |.. ..+ .+.+.--+|+|+.+..-++.+.+ | .|..-.++||++
T Consensus 350 ElLaSYnDe~IYLF~~~~~~-----G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF---------f-GPrsEyVvSGSD 414 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGD-----GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF---------F-GPRSEYVVSGSD 414 (559)
T ss_pred ceeeeecccceEEecccccc-----CCCCCCCcchhhccchhhcccccccccceeee---------c-cCccceEEecCc
Confidence 55544 55568877543322 110 001 11122224777665554555443 2 366778999999
Q ss_pred CceEEEEecCCCCCCcccCCCcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCeE
Q 010302 309 RHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGD 368 (513)
Q Consensus 309 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~ 368 (513)
=|+||||.+++.+...-.-+.|.|.|=..+-.=++..+ ......-|.|.|+++.
T Consensus 415 CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA------sSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 415 CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA------SSGIDHDVKIWTPLTA 468 (559)
T ss_pred cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh------ccCCccceeeecCCcc
Confidence 99999999998665543335677888764433222222 1233345677777664
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=1.8e-12 Score=123.95 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=134.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCC------------------------------------CCcEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFI------------------------------------PGAVEW 44 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~------------------------------------~~~v~~ 44 (513)
+.++.+|++|+.|+..|.|-.+|+.++++...+.+... ...+..
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~r 214 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVAR 214 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhh
Confidence 36788999999999999999999999888776653210 012233
Q ss_pred EEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcce
Q 010302 45 VYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV 124 (513)
Q Consensus 45 v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 124 (513)
+.|.|.- ++|++++..|.++--|+. .++.+..+....+.+..++-+|-.-.+-.|...|+|.+|.+..
T Consensus 215 LeFLPyH--fLL~~~~~~G~L~Y~DVS--~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-------- 282 (545)
T KOG1272|consen 215 LEFLPYH--FLLVAASEAGFLKYQDVS--TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-------- 282 (545)
T ss_pred hcccchh--heeeecccCCceEEEeec--hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC--------
Confidence 3444443 388999999999999998 8899998888888999999999999999999999999998866
Q ss_pred eeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 125 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
.+++..+..|.++|.++++.++|+|+||.+.|..++|||++.-..+.++
T Consensus 283 ------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 283 ------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred ------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 5778889999999999999999999999999999999999987665554
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.5e-11 Score=119.08 Aligned_cols=210 Identities=16% Similarity=0.211 Sum_probs=138.1
Q ss_pred CeEecCCCEEE-EEeCCCcEEEEEccCCceeEEEEcC--------------------------CC-----------CCcE
Q 010302 1 MQVSVDGLLCC-SISNDKSVKIYDVVNYDMMLMIRLP--------------------------FI-----------PGAV 42 (513)
Q Consensus 1 v~~s~dg~~la-s~s~D~~v~iwd~~~~~~~~~~~l~--------------------------~~-----------~~~v 42 (513)
|..||||+|+. ||-..-.|++||+.+..+.....+. +| |...
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G 136 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG 136 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCC
Confidence 46899999865 5557889999999864332211111 11 1122
Q ss_pred EEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc
Q 010302 43 EWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 122 (513)
Q Consensus 43 ~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 122 (513)
..++++..+..++++..+. .|+=+++. .+..+..+....+.+.++..++...+|++|+.+|.+..||.++......
T Consensus 137 RDm~y~~~scDly~~gsg~--evYRlNLE--qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGS--EVYRLNLE--QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred ccccccCCCccEEEeecCc--ceEEEEcc--ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence 2333333333333333222 35555555 8888888888889999999999999999999999999999987543111
Q ss_pred ceeeeecCCccccccccCC-----cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcc
Q 010302 123 EVSFRLKSDTNLFEILKSK-----TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 197 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~-----~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 197 (513)
. ........|. ..|+++.|+.||-.+++|..+|.+.|||+++.+.+..-+...
T Consensus 213 ---l-----~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-------------- 270 (703)
T KOG2321|consen 213 ---L-----DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-------------- 270 (703)
T ss_pred ---e-----ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC--------------
Confidence 0 0011111222 349999999999999999999999999999988765543211
Q ss_pred ccccccccceeeeeeeccccCCCCCCceEEcCC--CCEEEEccccceEEEEcccCcEEEEeC
Q 010302 198 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES--SNFLIYATLLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 198 ~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~--g~~li~~s~~gi~v~d~~t~~~v~~~g 257 (513)
..+...+.|.+. ++-|++....-++|||-.+|+....+.
T Consensus 271 ---------------------e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 271 ---------------------ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ---------------------ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 112334455443 455666666669999999999877764
No 222
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=5.4e-12 Score=116.57 Aligned_cols=243 Identities=16% Similarity=0.160 Sum_probs=149.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc---eeEEEEcCCC------------CCcEEEEEEcCCCcceEEEEeCCCCeE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD---MMLMIRLPFI------------PGAVEWVYKQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~---~~~~~~l~~~------------~~~v~~v~~s~~~~~~~l~s~~~d~~I 65 (513)
|.|..+|.+||+|..+|.|.+|.-.... ....-.+..| ...+..+.|.+.+....+....+|.+|
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkti 110 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTI 110 (433)
T ss_pred EEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcce
Confidence 4688999999999999999999654321 1001011111 235778888888776666666789999
Q ss_pred EEEecCCCCCcc---------------------------------eEEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEE
Q 010302 66 HIYDARADSNEP---------------------------------LISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEY 111 (513)
Q Consensus 66 ~iwd~~~~~~~~---------------------------------i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~i 111 (513)
++|-++....+. .+.+. .|...|.++.++.|...++|++ |-.|.+
T Consensus 111 KlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINL 189 (433)
T KOG1354|consen 111 KLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINL 189 (433)
T ss_pred eeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeee
Confidence 999875322111 11111 6888899999999999999887 667999
Q ss_pred ecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHh
Q 010302 112 WSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQ 190 (513)
Q Consensus 112 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~ 190 (513)
|+++-... .|..-.-+ ......-...|++..|+|.. +.++-.+..|+||+.|++...+- +.|.
T Consensus 190 Wnlei~d~-----sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC---d~hs------- 253 (433)
T KOG1354|consen 190 WNLEIIDQ-----SFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC---DAHS------- 253 (433)
T ss_pred ccccccCC-----ceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh---cchh-------
Confidence 98743111 11100000 00111122357888999965 56677778999999999864321 1111
Q ss_pred cCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEc-ccCcEEEEeCCCCccchhheec
Q 010302 191 RSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNL-HTNKVSRILGKVENNDRFLRIA 269 (513)
Q Consensus 191 ~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~-~t~~~v~~~g~~~~~~r~~~~~ 269 (513)
.++..+- +.+.|... ......+..+.|+++|+|+++-.+..|++||+ ...+.+.++..|+ -.|---.+
T Consensus 254 ----KlfEepe-dp~~rsff-----seiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~-~lr~kLc~ 322 (433)
T KOG1354|consen 254 ----KLFEEPE-DPSSRSFF-----SEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHE-YLRSKLCS 322 (433)
T ss_pred ----hhhcccc-CCcchhhH-----HHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehH-hHHHHHHH
Confidence 1110000 00011000 01123556789999999999999999999999 4667777777666 44443334
Q ss_pred cc
Q 010302 270 LY 271 (513)
Q Consensus 270 ~~ 271 (513)
+|
T Consensus 323 lY 324 (433)
T KOG1354|consen 323 LY 324 (433)
T ss_pred Hh
Confidence 44
No 223
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.40 E-value=1.3e-11 Score=111.69 Aligned_cols=151 Identities=14% Similarity=0.070 Sum_probs=118.2
Q ss_pred CCCEEEEEeCCCcEEEEEccCCce-eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee--
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDM-MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-- 82 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~-~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-- 82 (513)
|-++|.++|-|-+..|||++++.. .-.-++-.|...|..++|...+.+ +++|.+.||.++++|++ ..+.-..+.
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR--~leHSTIIYE~ 238 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLR--SLEHSTIIYED 238 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEec--ccccceEEecC
Confidence 568999999999999999998632 112234479999999999986554 89999999999999998 433322222
Q ss_pred -cCCCCeEEEEEcC-CCCEEEEEcCC-CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC-CCEEEE
Q 010302 83 -VHMGPVKVMRYNP-VFDTVISADDK-GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-GKQFSI 158 (513)
Q Consensus 83 -~h~~~V~~l~~sp-~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~s 158 (513)
....+...++|++ +.+++++-..| ..|.|.|++.. ..++..+..|.+.|+.++|.|. ...|++
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-------------~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-------------CTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-------------CcceehhhcCcccccceEecCCCCceeee
Confidence 3256788899998 56777776554 45888898763 4667889999999999999995 468999
Q ss_pred EeCCCcEEEEEcCC
Q 010302 159 TSPDRRIRVFWFRT 172 (513)
Q Consensus 159 ~s~D~~I~iwd~~t 172 (513)
++.|..+.+||+.+
T Consensus 306 aGDD~qaliWDl~q 319 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQ 319 (364)
T ss_pred cCCcceEEEEeccc
Confidence 99999999999865
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=1.1e-10 Score=107.50 Aligned_cols=283 Identities=14% Similarity=0.152 Sum_probs=162.1
Q ss_pred CeEecCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
+.|+.|..+++.+ ..|+.|.+|++...+....+. ..+.++..++|||+++. ++.+...+-.|.+|.+. + +...
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--eg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~--t-~~~~ 127 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--EGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLN--T-QKGY 127 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEec--cCCCcceeeeECCCcce-EeeeecceeEEEEEEec--c-ceeE
Confidence 3577777666554 578899999998766665544 66788999999999975 66666778899999996 3 3334
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCc---EEE-----e------cCCCCCCCCcceeeeecC------Cccc--ccc
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGI---IEY-----W------SPHTLQFPESEVSFRLKS------DTNL--FEI 137 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~---i~i-----w------d~~~~~~~~~~~~~~~~~------~~~~--~~~ 137 (513)
.++.....+..++|+|+|++.+.++.... +.| | ++.+... ..+.|+... +..+ ..+
T Consensus 128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl--tgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL--TGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc--cCceECCCCcEEEEecchhhheee
Confidence 44444556788999999998877764321 111 1 1111111 011111110 0111 111
Q ss_pred ccC-CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe------cccH-HHHHHHhcCCC----Ccccccccccc
Q 010302 138 LKS-KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY------DESL-EVAQDLQRSDA----PLYRLEAIDFG 205 (513)
Q Consensus 138 ~~~-~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~------~~~~-~~i~~~~~~~~----~~~~l~~~~~~ 205 (513)
..| .-.+..++|+|.+++|+.|+.|+.+|+-+--+-+.+..+ .... ..+..-.++.- .-++..+.+.+
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 122 245888999999999999999999999876654443322 1111 11110000000 00111111111
Q ss_pred ceeeeeee-------------cccc------CCCCCCceEEcCCCCEEEEcccc---ceEEEEcccCcEEEEeCCCCccc
Q 010302 206 RRMAVEKE-------------IEKT------ETAPPSNAIFDESSNFLIYATLL---GIKIVNLHTNKVSRILGKVENND 263 (513)
Q Consensus 206 ~r~~~e~e-------------~~~~------~~~~~~~i~fd~~g~~li~~s~~---gi~v~d~~t~~~v~~~g~~~~~~ 263 (513)
...-.+.| ..++ .......++|++|..|+++-++. -+.+||+..-++..++-.-+ .+
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~-pi 364 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH-PI 364 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc-ce
Confidence 11111110 0110 11233468999999999987654 38999998888766664323 22
Q ss_pred hhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 010302 264 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
|. | .|.+..|.|+.+-++. |+|+|+...+
T Consensus 365 ra-----f----------------------~WdP~~prL~vctg~s-rLY~W~psg~ 393 (447)
T KOG4497|consen 365 RA-----F----------------------EWDPGRPRLVVCTGKS-RLYFWAPSGP 393 (447)
T ss_pred eE-----E----------------------EeCCCCceEEEEcCCc-eEEEEcCCCc
Confidence 21 2 2445556555544444 6999977653
No 225
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=9.2e-12 Score=124.58 Aligned_cols=124 Identities=13% Similarity=0.059 Sum_probs=102.7
Q ss_pred CCCCCcEEEEEEcCCCcceEEEEeCCC-----CeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEE
Q 010302 36 PFIPGAVEWVYKQGDVKAGLAISDRNS-----SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIE 110 (513)
Q Consensus 36 ~~~~~~v~~v~~s~~~~~~~l~s~~~d-----~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~ 110 (513)
-+|...+.+++.+|.++ +++|+... ..|++|+.. +...++.+.+|+-.|+.++||||+++|++.|.|+++.
T Consensus 522 YGHGyEv~~l~~s~~gn--liASaCKS~~~ehAvI~lw~t~--~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGN--LIASACKSSLKEHAVIRLWNTA--NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred ccCceeEEEEEecCCCC--EEeehhhhCCccceEEEEEecc--chhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 35677899999999988 88887653 348999987 7788888999999999999999999999999999999
Q ss_pred EecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010302 111 YWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 173 (513)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg 173 (513)
+|.......+ .......+.|+.-|+++.|+|++.+|+|+|.|.+|++|.....
T Consensus 598 l~~~~~~~~~----------e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 598 LYEVQEDIKD----------EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeeecccch----------hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9976442211 1112225569989999999999999999999999999998776
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.1e-10 Score=119.74 Aligned_cols=196 Identities=18% Similarity=0.139 Sum_probs=126.4
Q ss_pred CeEecCCCEEEEEeCC---CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEE-eCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISND---KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAIS-DRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D---~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s-~~~d~~I~iwd~~~~~~~ 76 (513)
.+|||||+.||.++.+ ..|.+||+.+++..... ..++....+.|+|+++.+++.. ...+..|.+||+. +++
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~--~g~ 283 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG--SRQ 283 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC--CCC
Confidence 3699999999988743 46999999887754332 2334555789999998643332 2233469999986 443
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEc-CCCc--EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISAD-DKGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
+..+..+.......+|+|+|+.|+.++ .++. |.++|+.+++ ...+..+.......+|||||
T Consensus 284 -~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---------------~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 284 -LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---------------AERLTFQGNYNARASVSPDG 347 (433)
T ss_pred -eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------------eEEeecCCCCccCEEECCCC
Confidence 445556665667899999999887665 4455 4455554422 11122222344568999999
Q ss_pred CEEEEEeCCC---cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 154 KQFSITSPDR---RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 154 ~~l~s~s~D~---~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++|+..+.++ .|.+||+.+++.. .+... .......|+++
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-------------------------------------~~~~~p~~spd 389 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-------------------------------------SLDESPSFAPN 389 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeE-ECCCC-------------------------------------CCCCCceECCC
Confidence 9998765432 6899999887653 22110 01124579999
Q ss_pred CCEEEEcccc----ceEEEEcccCcEEEEe
Q 010302 231 SNFLIYATLL----GIKIVNLHTNKVSRIL 256 (513)
Q Consensus 231 g~~li~~s~~----gi~v~d~~t~~~v~~~ 256 (513)
|++|++.+.. .|.++++..+ ..+.+
T Consensus 390 G~~i~~~s~~~g~~~L~~~~~~g~-~~~~l 418 (433)
T PRK04922 390 GSMVLYATREGGRGVLAAVSTDGR-VRQRL 418 (433)
T ss_pred CCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence 9999988653 2777777443 34444
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.1e-11 Score=112.33 Aligned_cols=191 Identities=20% Similarity=0.221 Sum_probs=131.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC--CCcc-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD--SNEP- 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~--~~~~- 77 (513)
++|++.=.-+|++..|-+|++||-.. +....++- .....+.+++|.|.+...+.+. .. .-|.+|..... ....
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks-~sQrnvtclawRPlsaselavg-Cr-~gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-VSQRNVTCLAWRPLSASELAVG-CR-AGICIWSDSRTLNANRNI 179 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecc-hhhcceeEEEeccCCcceeeee-ec-ceeEEEEcCccccccccc
Confidence 45666555678889999999999876 44344331 2346799999999887644444 33 35999976311 1111
Q ss_pred ---------eEEeecCCCCeEEEEEcCCCCEEEEEcC-CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 78 ---------LISKKVHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 78 ---------i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
+..-.+| .+|++++|++||..+++++. |..|.|||+.++.+ .++. ....+.+.-+
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~------------~pL~--~~glgg~slL 244 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK------------IPLI--PKGLGGFSLL 244 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc------------cccc--ccCCCceeeE
Confidence 1112255 78999999999999999884 66799999988543 2222 2344568899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
.|||||.+|..+.-|+..++|+... ....+ .+. ....+...+
T Consensus 245 kwSPdgd~lfaAt~davfrlw~e~q~wt~er-----------------------------------w~l--gsgrvqtac 287 (445)
T KOG2139|consen 245 KWSPDGDVLFAATCDAVFRLWQENQSWTKER-----------------------------------WIL--GSGRVQTAC 287 (445)
T ss_pred EEcCCCCEEEEecccceeeeehhcccceecc-----------------------------------eec--cCCceeeee
Confidence 9999999999999999999996432 11111 111 112456789
Q ss_pred EcCCCCEEEEccccceEEEEc
Q 010302 227 FDESSNFLIYATLLGIKIVNL 247 (513)
Q Consensus 227 fd~~g~~li~~s~~gi~v~d~ 247 (513)
|+|.|++|++.....-.++.+
T Consensus 288 WspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 288 WSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred ecCCCCEEEEEEcCCceEEEE
Confidence 999999999998876555554
No 228
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.36 E-value=1e-10 Score=115.85 Aligned_cols=204 Identities=12% Similarity=0.162 Sum_probs=129.2
Q ss_pred CeEecCCCEEEEEeC-CCcEEEEEccCCc-eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISN-DKSVKIYDVVNYD-MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~-D~~v~iwd~~~~~-~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|+|+|++|++++. ++.|.+|++.+.. ............++..+.++|+++. ++++...++.|.+||+.. .+...
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~-~g~l~ 162 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSD-DGHLV 162 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECC-CCccc
Confidence 478999999988874 8899999997422 2111111112234667788998863 556777889999999962 22221
Q ss_pred ------EEeecCCCCeEEEEEcCCCCEEEEEcC-CCcEEEecCCCC--CCCCcceeeeecCCccccccc------cCCcc
Q 010302 79 ------ISKKVHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTL--QFPESEVSFRLKSDTNLFEIL------KSKTT 143 (513)
Q Consensus 79 ------~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~ 143 (513)
...... .....++|+|++++++++.. +++|.+|++... +. +.+..+. .+..+
T Consensus 163 ~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~------------~~~~~~~~~p~~~~~~~~ 229 (330)
T PRK11028 163 AQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI------------ECVQTLDMMPADFSDTRW 229 (330)
T ss_pred ccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE------------EEEEEEecCCCcCCCCcc
Confidence 111122 33568999999999977775 899999998631 11 0111111 12234
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 144 VSAIEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 144 v~~v~~spdg~~l~s~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
...+.++|+|++++++.. ++.|.+|++.+......+..+. .....+
T Consensus 230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~---------------------------------~~~~~p 276 (330)
T PRK11028 230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ---------------------------------PTETQP 276 (330)
T ss_pred ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE---------------------------------eccccC
Confidence 557999999999988764 7899999986532111111100 000134
Q ss_pred CceEEcCCCCEEEEccc--cceEEEEcc--cCcE
Q 010302 223 SNAIFDESSNFLIYATL--LGIKIVNLH--TNKV 252 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s~--~gi~v~d~~--t~~~ 252 (513)
..+.++++|++|+.+.. ..|.+|++. +|.+
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 56789999999998763 359999764 4543
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.36 E-value=1.2e-11 Score=120.53 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=127.5
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcC--CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC---------
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP--FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD--------- 73 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~--~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~--------- 73 (513)
|+|--|..|-.-|.|.+.|....+....+... .....+.++.|.+.+..+++++ -.++.+.+||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a-~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVA-HASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEE-EecCceEEeeccccccCCCCccc
Confidence 44555666666778887776553322222211 1236799999998877755554 45678888864210
Q ss_pred -----------------CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc
Q 010302 74 -----------------SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE 136 (513)
Q Consensus 74 -----------------~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 136 (513)
+..++..+.-.+..|...+|+|||++|++.|.||.+||+|..+. +.+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------------eLlg~ 327 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------------ELLGV 327 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH--------------HHHHH
Confidence 11233333334457889999999999999999999999998763 33445
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCC
Q 010302 137 ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD 193 (513)
Q Consensus 137 ~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~ 193 (513)
.+..-+...|++|||||++|++|+.|-.|.||.+..++.+..=.+|...+..+.+.+
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 555667899999999999999999999999999999999999899988888887765
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.3e-10 Score=119.47 Aligned_cols=192 Identities=14% Similarity=0.034 Sum_probs=125.8
Q ss_pred CeEecCCCEEEEEeC---CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCC--eEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSISN---DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSS--FVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s~---D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~--~I~iwd~~~~~~ 75 (513)
.+|||||+.||..+. +..|.+||+.+++.... ...++.+....|+|+++.+ +++.+.++ .|.+||+. ++
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~~l-a~~~~~~g~~~Iy~~d~~--~~ 280 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV---GNFPGMTFAPRFSPDGRKV-VMSLSQGGNTDIYTMDLR--SG 280 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe---ecCCCcccCcEECCCCCEE-EEEEecCCCceEEEEECC--CC
Confidence 369999999998874 46899999988765433 2345667788999999853 34444444 47777885 44
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEc-CCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISAD-DKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
....+..+........|+|+|+.|+..+ .++ .|.+||+...+ ...+..+...+....||||
T Consensus 281 -~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---------------~~~lt~~~~~~~~~~~Spd 344 (435)
T PRK05137 281 -TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---------------PRRISFGGGRYSTPVWSPR 344 (435)
T ss_pred -ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---------------eEEeecCCCcccCeEECCC
Confidence 3455666666677899999999887665 333 46667765422 2223333445667889999
Q ss_pred CCEEEEEeCC---CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 153 GKQFSITSPD---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 153 g~~l~s~s~D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
|++|+..+.+ ..|.+||+.++.. +.+.. ......+.|+|
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-------------------------------------~~~~~~p~~sp 386 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-------------------------------------GFLVEGPTWAP 386 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCce-EeccC-------------------------------------CCCCCCCeECC
Confidence 9999877643 3577777654432 22210 00123568999
Q ss_pred CCCEEEEcccc-------ceEEEEcccCcE
Q 010302 230 SSNFLIYATLL-------GIKIVNLHTNKV 252 (513)
Q Consensus 230 ~g~~li~~s~~-------gi~v~d~~t~~~ 252 (513)
+|++|++.+.. .+.++|+..++.
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 99999986542 356667655443
No 231
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=5.7e-11 Score=124.03 Aligned_cols=248 Identities=13% Similarity=0.130 Sum_probs=157.8
Q ss_pred CCCEEEEEeCCCcEEEEEcc-CC----ceeEEEE-cCC----CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 6 DGLLCCSISNDKSVKIYDVV-NY----DMMLMIR-LPF----IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~-~~----~~~~~~~-l~~----~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
|-.++.+|+.||.||||+-- +. +++.-.. +.. ..+.-.-+.|..... .+.+++.-..|+|||.. ..
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~--~E 1197 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAH--KE 1197 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecc--cc
Confidence 45678999999999999642 21 2221111 111 111112334433322 44455557899999997 55
Q ss_pred cceEEee-cCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc--eEEEEEcC
Q 010302 76 EPLISKK-VHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT--VSAIEVSP 151 (513)
Q Consensus 76 ~~i~~~~-~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp 151 (513)
..++.+. +....|+++.-+- .|+.++.|-.||.+++||.+.... ...+.....|+.+ |..+.+.+
T Consensus 1198 ~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-----------ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1198 QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-----------DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-----------cccceeecccCCcccceeEEeec
Confidence 5666555 4455677776553 579999999999999999876321 2345566678877 99999999
Q ss_pred CCCE-EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 152 DGKQ-FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 152 dg~~-l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
.|-. |++||.||.|++||++.......++ ....-++ +...+.+..++.
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-----------------iv~~~~y--------------Gs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLT-----------------IVAHWEY--------------GSALTALTVHEH 1315 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccce-----------------eeecccc--------------CccceeeeeccC
Confidence 7764 9999999999999998742111110 0000000 113567788889
Q ss_pred CCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCc
Q 010302 231 SNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH 310 (513)
Q Consensus 231 g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~ 310 (513)
...+++|+...|+||++. |+.+.++.-++ .|+.- ....+.-+.|| +-.+++|.|+.|.
T Consensus 1316 apiiAsGs~q~ikIy~~~-G~~l~~~k~n~---~F~~q-------~~gs~scL~FH-----------P~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1316 APIIASGSAQLIKIYSLS-GEQLNIIKYNP---GFMGQ-------RIGSVSCLAFH-----------PHRLLLAAGSADS 1373 (1387)
T ss_pred CCeeeecCcceEEEEecC-hhhhcccccCc---ccccC-------cCCCcceeeec-----------chhHhhhhccCCc
Confidence 999999998779999994 44455443222 22111 11123445554 6677888999999
Q ss_pred eEEEEecCCCC
Q 010302 311 RIYLFSRREPE 321 (513)
Q Consensus 311 ~i~i~~~~~~~ 321 (513)
++=||+.+.+.
T Consensus 1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred eEEEeecCCcC
Confidence 99999876544
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.35 E-value=1e-10 Score=120.00 Aligned_cols=279 Identities=13% Similarity=0.122 Sum_probs=166.1
Q ss_pred CCcEEEEEccCC-ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe----ecCCCCeEE
Q 010302 16 DKSVKIYDVVNY-DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK----KVHMGPVKV 90 (513)
Q Consensus 16 D~~v~iwd~~~~-~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~----~~h~~~V~~ 90 (513)
++.+.+|++... .+...+. .+..+.++.|+|.... +++.|..+|+|.+||++....++...+ ..|..+++.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~---~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE---SPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred CceEEEEecCCCCCceEEEe---cCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 347899999865 2223332 3467889999987654 888999999999999984433222222 289999999
Q ss_pred EEEcCCC--CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEEEeCCCcEEE
Q 010302 91 MRYNPVF--DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRV 167 (513)
Q Consensus 91 l~~sp~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s~s~D~~I~i 167 (513)
+.|..+- .-|+|++.||.|..|+++....|......+.+.... ... .....++++.|.| +-..++.|+.+|.|.-
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~-~~~-~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKG-QQS-SKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccc-ccc-ccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 9998643 449999999999999988877665422222111000 000 1224588999988 4567888999998876
Q ss_pred EEcCCCeEE--EEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC-EEEEccccceEE
Q 010302 168 FWFRTGKLR--RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLGIKI 244 (513)
Q Consensus 168 wd~~tg~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~-~li~~s~~gi~v 244 (513)
-+-...+.- ..++.+... .....++..+.++|=+. +++++.+-++++
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~------------------------------~~h~g~v~~v~~nPF~~k~fls~gDW~vri 424 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTF------------------------------ITHIGPVYAVSRNPFYPKNFLSVGDWTVRI 424 (555)
T ss_pred EeccCCcccccccccccccc------------------------------cccCcceEeeecCCCccceeeeeccceeEe
Confidence 332221110 111111000 01123445566666554 344444667999
Q ss_pred EEcc-cCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 010302 245 VNLH-TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 323 (513)
Q Consensus 245 ~d~~-t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~ 323 (513)
|.-. ....+..+-.+. ......+|.+..|.+|+++..+|+++||.-....
T Consensus 425 Ws~~~~~~Pl~~~~~~~---------------------------~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-- 475 (555)
T KOG1587|consen 425 WSEDVIASPLLSLDSSP---------------------------DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-- 475 (555)
T ss_pred ccccCCCCcchhhhhcc---------------------------ceeeeeEEcCcCceEEEEEcCCCceehhhhhccc--
Confidence 9875 222222211000 0134568999999999999999999999755422
Q ss_pred cccCCCcCccCCCCCccccccccccCCCcc-CCCCCEEEEEeCCeEEEE
Q 010302 324 EDATKGRDIFNEKPPPDELLAVSDIGNSVT-TSLPDNVILHTTMGDIHM 371 (513)
Q Consensus 324 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~v~~~t~~G~i~i 371 (513)
+.|.+..-.. .++....- ......+.+.-..|++.|
T Consensus 476 -----------~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 476 -----------EEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred -----------cCCccccccc-ccccceeecCCCCcEEEEecCCCcEEE
Confidence 2233221111 12222222 233677778888887544
No 233
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.7e-11 Score=120.78 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=119.4
Q ss_pred CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEc
Q 010302 16 DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN 94 (513)
Q Consensus 16 D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~s 94 (513)
+..|.+||...... .. +..+...+..+.|+|+++.+..++.. .+..|++||+..+..+.+..+.+| ..+++|+
T Consensus 183 ~~~i~i~d~dg~~~-~~--lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FI--VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCc-eE--eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC
Confidence 46899999865443 22 33466778999999999854443332 245799999973222334334343 3468999
Q ss_pred CCCCEEEEE-cCCCcEEEe--cCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 010302 95 PVFDTVISA-DDKGIIEYW--SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWF 170 (513)
Q Consensus 95 p~~~~l~s~-s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~ 170 (513)
|+|+.|+.+ +.+|.+.|| |+.+. .+..+..+...+.+.+|+|||+.|+..+ .++..+||++
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~---------------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGG---------------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCC---------------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 999988765 468877666 54332 2334455666678899999999887665 5788888876
Q ss_pred CCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEccc
Q 010302 171 RTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHT 249 (513)
Q Consensus 171 ~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t 249 (513)
... .....+.. . . ....|+|+|++|++.+..++.+||+.+
T Consensus 322 ~~~~~~~~~l~~------------------------------------~--~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~ 362 (429)
T PRK01742 322 SASGGGASLVGG------------------------------------R--G-YSAQISADGKTLVMINGDNVVKQDLTS 362 (429)
T ss_pred ECCCCCeEEecC------------------------------------C--C-CCccCCCCCCEEEEEcCCCEEEEECCC
Confidence 432 11111100 0 0 235699999999988878888899998
Q ss_pred CcEEEE
Q 010302 250 NKVSRI 255 (513)
Q Consensus 250 ~~~v~~ 255 (513)
|+....
T Consensus 363 g~~~~l 368 (429)
T PRK01742 363 GSTEVL 368 (429)
T ss_pred CCeEEe
Confidence 876544
No 234
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=1.8e-10 Score=105.80 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=131.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEc-cCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc--c
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDV-VNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--P 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~-~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~--~ 77 (513)
|+|+|..+.|++|+.|+.-++|.. ..++....+.+-.+.....++.|+|..+ .++.|+....|.||-...++.- .
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehh
Confidence 579999999999999999999999 5566556666656779999999999988 8888888899999987632221 1
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecC-----CCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP-----HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.+.-+.+++.|+++.|+|++-+|+.|+.|+..+++.. +...-| ..+--.+..++.+.++....+++..+.|+|+
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap-~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAP-TPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCC-CCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 1223377889999999999999999999999999843 221111 1122223345556666667789999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCe
Q 010302 153 GKQFSITSPDRRIRVFWFRTGK 174 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~ 174 (513)
|..|+-.+.|.++.+-|.....
T Consensus 218 G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc
Confidence 9999999999999998876543
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.4e-10 Score=106.39 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=114.5
Q ss_pred CCEEEEEeCCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 7 GLLCCSISNDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
+.+|+.. .+..|.||... +-+.++.+.....|.+.+++.-... ..+++.-|-.-|.|+|-|+.......-..+..|.
T Consensus 104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~-k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~ 181 (346)
T KOG2111|consen 104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN-KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD 181 (346)
T ss_pred CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC-ceEEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence 4455544 46789999987 5566666665555666555543322 3335556667899999999732222346778999
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCc-EEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEEEEcCCCCEEEEEeCC
Q 010302 86 GPVKVMRYNPVFDTVISADDKGI-IEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~l~s~s~D 162 (513)
+.|.|++.+.+|.++||+|..|+ |||||..+ ++.++++.. ....|++++|||++.+||++|..
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~--------------g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTED--------------GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCC--------------CcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 99999999999999999999998 79999988 455666654 44669999999999999999999
Q ss_pred CcEEEEEcCCC
Q 010302 163 RRIRVFWFRTG 173 (513)
Q Consensus 163 ~~I~iwd~~tg 173 (513)
|+++||.++.-
T Consensus 248 gTlHiF~l~~~ 258 (346)
T KOG2111|consen 248 GTLHIFSLRDT 258 (346)
T ss_pred CeEEEEEeecC
Confidence 99999998763
No 236
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=109.33 Aligned_cols=146 Identities=18% Similarity=0.118 Sum_probs=110.6
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEEE--------cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce--
Q 010302 9 LCCSISNDKSVKIYDVVNYDMMLMIR--------LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL-- 78 (513)
Q Consensus 9 ~las~s~D~~v~iwd~~~~~~~~~~~--------l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i-- 78 (513)
+|+.|-++|.|-+||+.+++.+..+. ...|...+..+.+.+.-. --++++.+..+..|.++..++.+.
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCCCccccceeeeeccccCccccc
Confidence 35556689999999999874332211 224667777777764333 345677777889998863333222
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
..+......|..+..-||++.+++++.|+.||+|+-++ ..++..++.|++.|++++|+|+...+|.
T Consensus 245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt--------------l~pLAVLkyHsagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT--------------LNPLAVLKYHSAGVNAVAFSPDCELMAA 310 (323)
T ss_pred ceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc--------------CCchhhhhhhhcceeEEEeCCCCchhhh
Confidence 12223445688899999999999999999999998776 5678889999999999999999999999
Q ss_pred EeCCCcEEEEEc
Q 010302 159 TSPDRRIRVFWF 170 (513)
Q Consensus 159 ~s~D~~I~iwd~ 170 (513)
+|.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=2.2e-09 Score=98.71 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=125.9
Q ss_pred CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC--CCeEEEEEc
Q 010302 17 KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM--GPVKVMRYN 94 (513)
Q Consensus 17 ~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~--~~V~~l~~s 94 (513)
..|.|||=...+++..+.+. ..|..+..+++ .++.. ..+.|.||... .+.+.++.+..-. ....+++-+
T Consensus 75 NkviIWDD~k~~~i~el~f~---~~I~~V~l~r~----riVvv-l~~~I~VytF~-~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN---SEIKAVKLRRD----RIVVV-LENKIYVYTFP-DNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred ceEEEEecccCcEEEEEEec---cceeeEEEcCC----eEEEE-ecCeEEEEEcC-CChhheeeeecccCCCceEeecCC
Confidence 57999996666666666543 67888888776 33332 24579999985 3556666665222 223333322
Q ss_pred CCCCEEEE-EcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCc-EEEEEcCC
Q 010302 95 PVFDTVIS-ADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR-IRVFWFRT 172 (513)
Q Consensus 95 p~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~-I~iwd~~t 172 (513)
.+..+|+- |-.-|.|+|-|+...+. .....+..|.+.|.|++.+-+|..+||+|..|+ |||||..+
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKP------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED 213 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCc------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence 24444544 33568999999866331 134667789999999999999999999998887 79999999
Q ss_pred CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEccc
Q 010302 173 GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 249 (513)
Q Consensus 173 g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t 249 (513)
|+.++.+.... ....+.+++|+|++.+|+.+|+.| ++|+.+..
T Consensus 214 g~~l~E~RRG~----------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 214 GTLLQELRRGV----------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEeeeeecCC----------------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99988764311 112345889999999999999887 89998764
No 238
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.28 E-value=1.3e-10 Score=119.23 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=160.2
Q ss_pred eEec-CCCEEEEEeCCCcEEEEEccCCce--eEEE--EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-
Q 010302 2 QVSV-DGLLCCSISNDKSVKIYDVVNYDM--MLMI--RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN- 75 (513)
Q Consensus 2 ~~s~-dg~~las~s~D~~v~iwd~~~~~~--~~~~--~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~- 75 (513)
+|+| +..+||.|..+|.|.+||+..+.. ...+ ....|...|..+.|..+..+.-+++++.||.|+.|+++.-..
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 5777 567888888999999999987655 2222 223577888888888765544578888899999998862211
Q ss_pred cceEEee---------cCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceE
Q 010302 76 EPLISKK---------VHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 145 (513)
Q Consensus 76 ~~i~~~~---------~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (513)
.....+. .....+++++|.+ +.+.|+.|+++|.|.--+-...+. ... ..-+.+..+..|.++|.
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~-~~~-----~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP-APE-----VSYKGHSTFITHIGPVY 402 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc-ccc-----ccccccccccccCcceE
Confidence 0011111 1234688999998 677899999999987633222111 000 01123445667899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc-------
Q 010302 146 AIEVSPDGKQFSITSPDRRIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT------- 217 (513)
Q Consensus 146 ~v~~spdg~~l~s~s~D~~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~------- 217 (513)
++.++|=+..+...+.|.+++||... .-..+..++.+...+++++|++...-.+...+....+.+..=+++.
T Consensus 403 ~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred eeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 99999977765555559999999987 6667777777777788899998754333333333333332211111
Q ss_pred --CCCCCCceEEcCCCCEEEEccccc-eEEEEccc
Q 010302 218 --ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 249 (513)
Q Consensus 218 --~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t 249 (513)
.......+.|+++|++|+.|...| +++|++..
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 123445678899999999998776 88888854
No 239
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=7.5e-10 Score=114.17 Aligned_cols=171 Identities=8% Similarity=0.076 Sum_probs=125.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
+++||+++++|++..||.|.+|.-.. .+....-.+..|...+.++.|++++. ++.||+..+.+.+|.+. +++ .
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~--T~~-k 285 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLE--TGK-K 285 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc--eEeecccceEEEEEeec--CCC-c
Confidence 37899999999999999999995433 33333334557888999999999999 99999999999999997 444 2
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
+-+..-.++|..+.++||+.+.+...+|+.|.+....+......+-.+.+.... .-....+-.+.++++|.-+.++-
T Consensus 286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~---~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS---TKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc---ccccccccceeEEEcCCCCceee
Confidence 334455689999999999999999999999999866543331110000000000 01112344678999998888888
Q ss_pred EeCCCcEEEEEcCCCeEEEEe
Q 010302 159 TSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~ 179 (513)
.+..+.|.+||+-+-+.+..+
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred cCCCceEEEEeccccceeeeE
Confidence 899999999999887766554
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.27 E-value=8.9e-10 Score=112.92 Aligned_cols=152 Identities=15% Similarity=0.074 Sum_probs=103.5
Q ss_pred eEecCCCEEEEEeCC---CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC--CCeEEEEecCCCCCc
Q 010302 2 QVSVDGLLCCSISND---KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN--SSFVHIYDARADSNE 76 (513)
Q Consensus 2 ~~s~dg~~las~s~D---~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~--d~~I~iwd~~~~~~~ 76 (513)
+|||||++||.++.+ ..|++||+.+++...... +.+....+.|+|+++.++ ++.+. +..|.+||+. ++
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---~~~~~~~~~~spDg~~l~-~~~~~~~~~~i~~~d~~--~~- 268 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---FPGMNGAPAFSPDGSKLA-VSLSKDGNPDIYVMDLD--GK- 268 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---CCCCccceEECCCCCEEE-EEECCCCCccEEEEECC--CC-
Confidence 689999999988754 479999999876544333 345566688999988533 33333 3468888885 43
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcC-CC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADD-KG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
....+..+........|+|+++.|+..+. ++ .|.++|+.+.+ ...+..+...+....|+|+|
T Consensus 269 ~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---------------~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 269 QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---------------VRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------------EEEeecCCCCccCeEECCCC
Confidence 34445555555667899999998876553 33 46666665422 22233344556788999999
Q ss_pred CEEEEEeCCC---cEEEEEcCCCeE
Q 010302 154 KQFSITSPDR---RIRVFWFRTGKL 175 (513)
Q Consensus 154 ~~l~s~s~D~---~I~iwd~~tg~~ 175 (513)
++++.++.++ .|.+||+.++..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCe
Confidence 9999888765 788888877543
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.3e-10 Score=111.82 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=108.0
Q ss_pred EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee-cCCCCeEEEEEcC--CCCEEEEEcCCCcEE
Q 010302 34 RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNP--VFDTVISADDKGIIE 110 (513)
Q Consensus 34 ~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-~h~~~V~~l~~sp--~~~~l~s~s~dg~i~ 110 (513)
.+.+|.+.|+++.|..++. +++||+.|-.+.|||.- ..++++.+. +|...|.++.|-| +.+.++||..|..|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4668999999999999999 99999999999999997 778888776 9999999999999 456889999999999
Q ss_pred EecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q 010302 111 YWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 111 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~s~s~D~~I~iwd~~t 172 (513)
++|+...+.-. .+-...+....+..|...|..++-.|++ +.+-+++.||+|+.+|++.
T Consensus 121 lfdl~~~~~~~----~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 121 LFDLDSSKEGG----MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEecccccccc----cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99997522110 0111123344556688999999999999 7888999999999999986
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.25 E-value=5.7e-09 Score=103.95 Aligned_cols=267 Identities=17% Similarity=0.184 Sum_probs=155.7
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|+|||+++.+++.|+.|.++|+.+.+.+..+... .....+.++++++. +++++..++.+.++|.+ +.++++.+
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---~~~~~i~~s~DG~~-~~v~n~~~~~v~v~D~~--tle~v~~I 116 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---GNPRGIAVSPDGKY-VYVANYEPGTVSVIDAE--TLEPVKTI 116 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---SEEEEEEE--TTTE-EEEEEEETTEEEEEETT--T--EEEEE
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---CCcceEEEcCCCCE-EEEEecCCCceeEeccc--cccceeec
Confidence 58999999999999999999999999988888743 56788999999983 45566678999999998 88888887
Q ss_pred ecC-------CCCeEEEEEcCCCCEEEEE-cCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 82 KVH-------MGPVKVMRYNPVFDTVISA-DDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 82 ~~h-------~~~V~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
... ...+.++..+|....++.. -..+.|.+.|....+ .................|+|++
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-------------~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-------------NLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS-------------CEEEEEEE--TTEEEEEE-TTS
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc-------------ccceeeecccccccccccCccc
Confidence 632 3467888889988866554 445767666765421 1111222234457789999999
Q ss_pred CEEEEEe-CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccccccee------------------------
Q 010302 154 KQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM------------------------ 208 (513)
Q Consensus 154 ~~l~s~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~------------------------ 208 (513)
++++.+. .+..|-++|.++++.+..++..... .+.+.....+..+|...
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccc------cccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 9887654 5779999999999988766421100 00001111111111000
Q ss_pred --eeeeeccccCCCCCCceEEcCCCCEEEEccc-----cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCccee
Q 010302 209 --AVEKEIEKTETAPPSNAIFDESSNFLIYATL-----LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVR 281 (513)
Q Consensus 209 --~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~-----~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~ 281 (513)
.+-+++.- ......+..+|+++++..... ..|.|+|..+-++++.+.... ..+.+.+.
T Consensus 258 ~wkvv~~I~~--~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~e------------ 322 (369)
T PF02239_consen 258 AWKVVKTIPT--QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHME------------ 322 (369)
T ss_dssp BTSEEEEEE---SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEE------------
T ss_pred cCeEEEEEEC--CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccE------------
Confidence 01111111 123356777999999988722 249999999998888874322 22222222
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCc-eEEEEecCCCC
Q 010302 282 KIPAAAANANESKEPFSDPTLLCCAFKRH-RIYLFSRREPE 321 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~d~~l~~s~~~~~-~i~i~~~~~~~ 321 (513)
+ ++....+..|.++++ +|.||..++-+
T Consensus 323 ---f----------~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 323 ---F----------NPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp ---E-----------TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ---E----------CCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 1 134445566666666 99999877543
No 243
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.25 E-value=1.3e-10 Score=104.03 Aligned_cols=150 Identities=23% Similarity=0.220 Sum_probs=113.8
Q ss_pred CCcceEEEEeCCCCeEEEEecCCCCC----------cceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC
Q 010302 50 DVKAGLAISDRNSSFVHIYDARADSN----------EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 119 (513)
Q Consensus 50 ~~~~~~l~s~~~d~~I~iwd~~~~~~----------~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 119 (513)
++...++++|.+++.+.+||+. .+ +.+.....|..+|.++.|.+.-+.=++++.+..+..|++.....
T Consensus 162 c~s~~lllaGyEsghvv~wd~S--~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLS--TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccceEEEEEeccCCeEEEEEcc--CCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 4556688999999999999997 43 34444558999999999998666668888888888997754110
Q ss_pred CCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccc
Q 010302 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 199 (513)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l 199 (513)
.-+......-.+..|..+.+-||++.+||++.|+.||||+.+++..+..+.-|.
T Consensus 240 ----------slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs---------------- 293 (323)
T KOG0322|consen 240 ----------SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS---------------- 293 (323)
T ss_pred ----------cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh----------------
Confidence 001111222233458889999999999999999999999999999988776544
Q ss_pred ccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEc
Q 010302 200 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNL 247 (513)
Q Consensus 200 ~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~ 247 (513)
..+..++|+++-..++.++.++ |.+|++
T Consensus 294 --------------------agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 --------------------AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --------------------cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2345788999988999888876 899986
No 244
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=3.4e-09 Score=112.81 Aligned_cols=260 Identities=13% Similarity=0.104 Sum_probs=153.1
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCc-----eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc--
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYD-----MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE-- 76 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~-----~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~-- 76 (513)
++++.+++|||.||+|++|++..-. .............+..+...+.++ .++.++.||.|++.++.....+
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCeEEEEEccccccccc
Confidence 3556999999999999999987421 222233333456678888888877 5666699999999998621111
Q ss_pred ---ceEEeecC-CCCeE-EEEEcC-CC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc--cCCcceEEE
Q 010302 77 ---PLISKKVH-MGPVK-VMRYNP-VF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL--KSKTTVSAI 147 (513)
Q Consensus 77 ---~i~~~~~h-~~~V~-~l~~sp-~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v 147 (513)
..+....+ .+.+. .-+|.. .. ..++.+..-+.|..||+++.. ....++ -..+.|+++
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~--------------~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH--------------DAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh--------------hHHhhhcCccccceeEE
Confidence 11111122 22333 334433 22 366777778889999997722 222222 245789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCce--
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNA-- 225 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i-- 225 (513)
+.+|.++++++|+..|.+.+||++=+..+..+..... .+...+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-----------------------------------~~i~~v~~ 1246 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-----------------------------------APIRHVWL 1246 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCccc-----------------------------------CCcceEEe
Confidence 9999999999999999999999998877765532110 111111
Q ss_pred -EEcCCCCEEEEccc---cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCe
Q 010302 226 -IFDESSNFLIYATL---LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT 301 (513)
Q Consensus 226 -~fd~~g~~li~~s~---~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 301 (513)
.+.+.....++++. ..|.+||+.+|.+-.++-..+ ..- .++.....+.+.+...++ .+...-..+++
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~-~~p--~ls~~~Ps~~~~kp~~~~-----~~~~~~~~~~~- 1317 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD-GAP--ILSYALPSNDARKPDSLA-----GISCGVCEKNG- 1317 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC-CCc--chhhhcccccCCCCCccc-----ceeeecccCCc-
Confidence 12223345555443 249999999998877774432 111 121111110000000000 00011112333
Q ss_pred EEEeeecCceEEEEecCCCCCC
Q 010302 302 LLCCAFKRHRIYLFSRREPEEP 323 (513)
Q Consensus 302 l~~s~~~~~~i~i~~~~~~~~~ 323 (513)
++.+|+.|.+|+-|.-..|+..
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecCCccceeeccCCCcccc
Confidence 4677888889999988777644
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=6.2e-10 Score=110.19 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=131.9
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCC-CCcEEEEEEc------C------------CCcceEEEEeCCCCe
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFI-PGAVEWVYKQ------G------------DVKAGLAISDRNSSF 64 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~-~~~v~~v~~s------~------------~~~~~~l~s~~~d~~ 64 (513)
.|-+.++|....||.+||||+.+++....+....+ .+.+.+..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999999887666543322 2333333331 1 222347788888999
Q ss_pred EEEEecCCCCCcceEEee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 65 VHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
|.+|++. .++..+.+. .|.+.|.++.++.+-..|.|++.|+.+..|+... ..........+.
T Consensus 82 v~~ys~~--~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--------------~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 82 VLLYSVA--GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--------------KVIIRIWKEQKP 145 (541)
T ss_pred EEEEEec--CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--------------ceeeeeeccCCC
Confidence 9999997 677777766 8999999999999999999999999999998866 333555566677
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHH
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL 189 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~ 189 (513)
.+.+++.+|||..+++++ +.|++||+++++.+.++.+|...+..+
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEE
Confidence 799999999999999875 789999999999999999987665444
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.4e-09 Score=109.23 Aligned_cols=203 Identities=16% Similarity=0.100 Sum_probs=123.8
Q ss_pred eEecCCCEEE---EEeCC--CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe---CCCCeEEEEecCCC
Q 010302 2 QVSVDGLLCC---SISND--KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD---RNSSFVHIYDARAD 73 (513)
Q Consensus 2 ~~s~dg~~la---s~s~D--~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~---~~d~~I~iwd~~~~ 73 (513)
+|||||+.++ +...+ ..|.+.++.+++......+ ++......|+|+++.+.+++. ..+-.+.+|++..+
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 5999997532 33333 3577778888776554443 345556899999986444331 11323444676522
Q ss_pred C-CcceEEeecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEec--CCCCCCCCcceeeeecCCccccccccCCcceEEEEE
Q 010302 74 S-NEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWS--PHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV 149 (513)
Q Consensus 74 ~-~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (513)
. ++.......+.......+|+|||+.|+..+ .++..++|. +... +.....+..+...+...+|
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~-------------g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE-------------GQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc-------------ccceEEeccCCCCccceeE
Confidence 1 233333323334456789999999876554 566666663 3210 1112333334456678899
Q ss_pred cCCCCEEEEEeCC---CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 150 SPDGKQFSITSPD---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 150 spdg~~l~s~s~D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
||||++|+..+.+ ..|.+||+.+++....... ........
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-------------------------------------~~~~~~p~ 377 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-------------------------------------PENKESPS 377 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-------------------------------------CCCccceE
Confidence 9999999876643 4689999988876432111 01123578
Q ss_pred EcCCCCEEEEcccc----ceEEEEcccCcEEEEeC
Q 010302 227 FDESSNFLIYATLL----GIKIVNLHTNKVSRILG 257 (513)
Q Consensus 227 fd~~g~~li~~s~~----gi~v~d~~t~~~v~~~g 257 (513)
|+|+|+.|++.+.. .|.++|+.+++..++..
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 99999999876432 38899998888766653
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=2.7e-10 Score=119.32 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=138.0
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcE---EEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAV---EWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v---~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
-+.+.++.+..+..+-+||.........+. ++..+ ..+-+-.....+++++|+--+.|.+|+.. .+..++ .+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~---~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~p~-~l 171 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQ---SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-EDNKPI-RL 171 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcC---CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-ccCCcc-ee
Confidence 456778888889999999997655544332 11211 11222233445588999999999999997 444555 57
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+|.+.|.++.|+.+|.++++.|.|.++|+|++.+.+. ......+|...|+.++|+|+ .++|++.
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-------------~~~~~fgHsaRvw~~~~~~n--~i~t~ge 236 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-------------LGCTGFGHSARVWACCFLPN--RIITVGE 236 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-------------cCcccccccceeEEEEeccc--eeEEecc
Confidence 79999999999999999999999999999999988442 12356689999999999998 9999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL- 240 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~- 240 (513)
|-+.++|+. .++.+..+++|. ......++.++....++++..+
T Consensus 237 dctcrvW~~-~~~~l~~y~~h~-----------------------------------g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 237 DCTCRVWGV-NGTQLEVYDEHS-----------------------------------GKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred ceEEEEEec-ccceehhhhhhh-----------------------------------hcceeEEEEcCCceEEEeeccCc
Confidence 999999964 344444555433 2233456667666666766555
Q ss_pred ceEEEEccc
Q 010302 241 GIKIVNLHT 249 (513)
Q Consensus 241 gi~v~d~~t 249 (513)
++++|++..
T Consensus 281 ~lk~~~l~~ 289 (967)
T KOG0974|consen 281 TLKLWDLNG 289 (967)
T ss_pred chhhhhhhc
Confidence 589998864
No 248
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.2e-08 Score=104.37 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=113.9
Q ss_pred cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe-CCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCC
Q 010302 18 SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD-RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV 96 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~-~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~ 96 (513)
.|.+||......... . .+...+....|+|+++.+..++. ..+..|.+|++. +++. ..+......+.+++|+||
T Consensus 180 ~l~~~d~dg~~~~~l-t--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~--~G~~-~~l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVV-H--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAV-RQVASFPRHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEe-e--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC--CCCe-EEccCCCCCcCCeEECCC
Confidence 688888865544332 2 34567889999999986544442 235679999997 4432 222223334557899999
Q ss_pred CCEEEEE-cCCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC-CcEEEE--Ec
Q 010302 97 FDTVISA-DDKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-RRIRVF--WF 170 (513)
Q Consensus 97 ~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D-~~I~iw--d~ 170 (513)
|+.|+.. +.++ .|.+||+.+++ +..+..+...+...+|+|||+.|+..+.+ +...|| |+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~---------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQ---------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCC---------------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 9988654 4455 47788886632 22333344457789999999999877753 444444 56
Q ss_pred CCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----ceEEEE
Q 010302 171 RTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVN 246 (513)
Q Consensus 171 ~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----gi~v~d 246 (513)
.+++..+ +.. .........|+|+|++|++.+.. .|.+||
T Consensus 319 ~~g~~~~-lt~------------------------------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~d 361 (429)
T PRK03629 319 NGGAPQR-ITW------------------------------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 361 (429)
T ss_pred CCCCeEE-eec------------------------------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEE
Confidence 5554322 110 00112357899999999987543 388899
Q ss_pred cccCcEEEE
Q 010302 247 LHTNKVSRI 255 (513)
Q Consensus 247 ~~t~~~v~~ 255 (513)
+.+++...+
T Consensus 362 l~~g~~~~L 370 (429)
T PRK03629 362 LATGGVQVL 370 (429)
T ss_pred CCCCCeEEe
Confidence 988875433
No 249
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.23 E-value=5e-11 Score=116.22 Aligned_cols=89 Identities=18% Similarity=0.298 Sum_probs=81.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
.+|||||++||+.|.||.+||||..+.+++..++ ..-+...+++||||++ ++++|++|..|.||.+. ..+.+..
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~--erRVVAR 369 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFE--ERRVVAR 369 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCcc--EEEecCCcceEEEEEec--cceEEEe
Confidence 3799999999999999999999999877766655 4457899999999999 99999999999999997 8889999
Q ss_pred eecCCCCeEEEEEcC
Q 010302 81 KKVHMGPVKVMRYNP 95 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp 95 (513)
-++|.+.|+.++|.|
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 999999999999998
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=9.4e-09 Score=105.72 Aligned_cols=177 Identities=15% Similarity=0.078 Sum_probs=116.8
Q ss_pred CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe-CCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC
Q 010302 17 KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD-RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP 95 (513)
Q Consensus 17 ~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~-~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp 95 (513)
..|.+||...... ..+. .+...+....|+|+++.+..++. ..+..|.+||+. +++. ..+..+...+.+.+|+|
T Consensus 182 ~~l~~~d~dg~~~-~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~--~g~~-~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE--TGQR-ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCCCc-EEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC--CCcE-EEeecCCCcccCcEECC
Confidence 3688888755443 2222 46678999999999986544443 235789999996 4433 34555666788899999
Q ss_pred CCCEEE-EEcCCCc--EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEE
Q 010302 96 VFDTVI-SADDKGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DR--RIRVFW 169 (513)
Q Consensus 96 ~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-D~--~I~iwd 169 (513)
+|+.|+ +.+.++. |.+||+.+++ +..+..+.......+|+|||+.|+..+. ++ .|.+||
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGT---------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCc---------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 998774 5666665 5566776532 3344445555677899999999987763 33 577778
Q ss_pred cCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----ceEEE
Q 010302 170 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIV 245 (513)
Q Consensus 170 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----gi~v~ 245 (513)
+.+++......+ ........|+|+|++|++.+.. .|.+|
T Consensus 321 ~~g~~~~~lt~~-------------------------------------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 321 ADGSNPRRISFG-------------------------------------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred CCCCCeEEeecC-------------------------------------CCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 766554322110 0122356799999999987643 37777
Q ss_pred EcccCc
Q 010302 246 NLHTNK 251 (513)
Q Consensus 246 d~~t~~ 251 (513)
|+.++.
T Consensus 364 d~~~~~ 369 (435)
T PRK05137 364 KPDGSG 369 (435)
T ss_pred ECCCCc
Confidence 875544
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.2e-09 Score=110.37 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=118.6
Q ss_pred eEecCCCEEEEEeCC-C--cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCC--eEEEEecCCCCCc
Q 010302 2 QVSVDGLLCCSISND-K--SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSS--FVHIYDARADSNE 76 (513)
Q Consensus 2 ~~s~dg~~las~s~D-~--~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~--~I~iwd~~~~~~~ 76 (513)
+|||||++|+..+.+ + .|.+||+.+++...... .++......|+|+++.++ ++.+.++ .|.++|+. +++
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La-~~~~~~g~~~Iy~~dl~--tg~ 297 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLA-LVLSKDGQPEIYVVDIA--TKA 297 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEE-EEEeCCCCeEEEEEECC--CCC
Confidence 699999999987643 2 58888998876543322 233445678999998643 3334445 47777875 443
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEc-CCCc--EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISAD-DKGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
...+..+.......+|+|+++.++..+ .++. |.++|+.+++ ...+..........+|+|||
T Consensus 298 -~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---------------~~~Lt~~g~~~~~~~~SpDG 361 (448)
T PRK04792 298 -LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---------------VSRLTFEGEQNLGGSITPDG 361 (448)
T ss_pred -eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------------EEEEecCCCCCcCeeECCCC
Confidence 445555656677899999999886554 3444 4445665432 11111122223457899999
Q ss_pred CEEEEEeC-CC--cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 154 KQFSITSP-DR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 154 ~~l~s~s~-D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++|+..+. ++ .|.++|+.+++... +... .......|+|+
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-------------------------------------~~d~~ps~spd 403 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-------------------------------------RLDESPSVAPN 403 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-------------------------------------CCCCCceECCC
Confidence 99887664 44 34556777765422 1100 00013369999
Q ss_pred CCEEEEccccc----eEEEEcccCcEEEEe
Q 010302 231 SNFLIYATLLG----IKIVNLHTNKVSRIL 256 (513)
Q Consensus 231 g~~li~~s~~g----i~v~d~~t~~~v~~~ 256 (513)
|+.|++.+..+ +.+++. +|+..+.+
T Consensus 404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred CCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 99999876542 667776 45555555
No 252
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=113.16 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=105.0
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|+|||.-|+|++.||.|+||.-.. -+.. .+......+.+++|.|+++..+.+.| +.+.|=-+. ....+..+
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSrsG-MLRS--tl~Q~~~~v~c~~W~p~S~~vl~c~g---~h~~IKpL~--~n~k~i~W 182 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSRSG-MLRS--TVVQNEESIRCARWAPNSNSIVFCQG---GHISIKPLA--ANSKIIRW 182 (737)
T ss_pred ccCCCCceeeeecCCceEEEEeccc-hHHH--HHhhcCceeEEEEECCCCCceEEecC---CeEEEeecc--cccceeEE
Confidence 5899999999999999999998742 1111 22245578999999999986444443 246655554 44556677
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCC--------CCCcceeeeecCCccc-----ccccc-CCcceEEE
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ--------FPESEVSFRLKSDTNL-----FEILK-SKTTVSAI 147 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~~-----~~~~~-~~~~v~~v 147 (513)
+.|.+-|.++.|+|..++++||++|...++||-.-.. .|...+.|..+..-.+ ..+.. ..+.|..+
T Consensus 183 kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnl 262 (737)
T KOG1524|consen 183 RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNL 262 (737)
T ss_pred eccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEE
Confidence 8999999999999999999999999999999864211 1111222222211000 01111 23556777
Q ss_pred EEcCCCCEEEEEeCCCcEEE
Q 010302 148 EVSPDGKQFSITSPDRRIRV 167 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~i 167 (513)
+|||||..++.|+..|.+.+
T Consensus 263 sWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 263 SWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEcCCCceeeccccCceEEE
Confidence 77777777777766665544
No 253
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=115.51 Aligned_cols=154 Identities=12% Similarity=0.147 Sum_probs=115.2
Q ss_pred cEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCC
Q 010302 41 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 120 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 120 (513)
.+..++|.|++.++++++++ .+.+||.+ .+..+.++++|.+.|.+++|+.+|+.++||+.|..+-+|...-
T Consensus 14 ci~d~afkPDGsqL~lAAg~---rlliyD~n--dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS---RLLVYDTS--DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---- 84 (1081)
T ss_pred chheeEECCCCceEEEecCC---EEEEEeCC--CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc----
Confidence 68899999999987777655 59999998 8899999999999999999999999999999999999996532
Q ss_pred CcceeeeecCCcccccc-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccc
Q 010302 121 ESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 199 (513)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l 199 (513)
--.+ ..|...|.|+.|+|-.+.|++++.. ..-+|........+
T Consensus 85 -------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---------------------- 128 (1081)
T KOG1538|consen 85 -------------EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---------------------- 128 (1081)
T ss_pred -------------cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh----------------------
Confidence 1112 2489999999999999999988743 24456543221110
Q ss_pred ccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEE
Q 010302 200 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRI 255 (513)
Q Consensus 200 ~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~ 255 (513)
........+.+|..+|++++.|-..| |.+=|...-+.+++
T Consensus 129 ----------------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I 169 (1081)
T KOG1538|consen 129 ----------------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI 169 (1081)
T ss_pred ----------------hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence 01112345789999999999997665 65655543333333
No 254
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.1e-09 Score=106.67 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=113.9
Q ss_pred CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe-CCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC
Q 010302 17 KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD-RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP 95 (513)
Q Consensus 17 ~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~-~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp 95 (513)
..|.+||...... ..+ ..+...+...+|+|+++.++..+- .....|.+||+. +++.. .+......+.+.+|+|
T Consensus 176 ~~L~~~D~dG~~~-~~l--~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~--~g~~~-~l~~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQNA-QSA--LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA--TGRRR-VVANFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCCc-eEe--ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC--CCCEE-EeecCCCCccceEECC
Confidence 3566677643222 222 245567889999999985444332 223569999997 44432 3333445567899999
Q ss_pred CCCEEE-EEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-CCcEEEEEc--C
Q 010302 96 VFDTVI-SADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWF--R 171 (513)
Q Consensus 96 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-D~~I~iwd~--~ 171 (513)
||+.|+ +.+.++...||.+... +..+..+..+.......+|+|||+.|+..+. ++...||.+ .
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~-------------~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNAD-------------GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECC-------------CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence 999886 5677888777743210 1123344445555667899999999886664 466666654 3
Q ss_pred CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----ceEEEEc
Q 010302 172 TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNL 247 (513)
Q Consensus 172 tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----gi~v~d~ 247 (513)
+++....... ........|+|+|++|++.+.. .|.+||+
T Consensus 317 ~g~~~~lt~~-------------------------------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 317 GGAAQRVTFT-------------------------------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CCceEEEecC-------------------------------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 3332211100 0112356899999999987654 3899999
Q ss_pred ccCcEEEE
Q 010302 248 HTNKVSRI 255 (513)
Q Consensus 248 ~t~~~v~~ 255 (513)
.+++...+
T Consensus 360 ~~g~~~~l 367 (427)
T PRK02889 360 ATGQVTAL 367 (427)
T ss_pred CCCCeEEc
Confidence 88875444
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.9e-09 Score=101.71 Aligned_cols=239 Identities=11% Similarity=0.120 Sum_probs=159.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEE----EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--CcceEE
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMI----RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS--NEPLIS 80 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~----~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~--~~~i~~ 80 (513)
.+.|..++.|..+..+++..+...... ......+.+..+..... .+++|-.+|.+.+|..+.+. ..++..
T Consensus 69 tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg----~Litc~~sG~l~~~~~k~~d~hss~l~~ 144 (412)
T KOG3881|consen 69 TEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG----TLITCVSSGNLQVRHDKSGDLHSSKLIK 144 (412)
T ss_pred eeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC----EEEEEecCCcEEEEeccCCcccccccee
Confidence 345665656777777777655544433 22222333433333222 67888889999999986333 344555
Q ss_pred eecCCCCeEEEEEcCCCCEE-EEEcCC--CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC--CCE
Q 010302 81 KKVHMGPVKVMRYNPVFDTV-ISADDK--GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD--GKQ 155 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l-~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd--g~~ 155 (513)
+..+ ..+..+.-++....+ ++|+.. ..++|||+++.+ ..|+.|.-..-.--..-.-|++++.|-+. ...
T Consensus 145 la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-----qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~ 218 (412)
T KOG3881|consen 145 LATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-----QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYK 218 (412)
T ss_pred eecC-CceeeeccCCCCCceEecCchhcccceeeeecccce-----eeeeccCCCCccccceeeeeeccceecCCCCCce
Confidence 5544 456777777755555 568888 789999997742 13443321111100112357888999887 889
Q ss_pred EEEEeCCCcEEEEEcCCCe-EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 156 FSITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
||+++.-+.+|+||.+.++ .+.+++- ...+++++...|+|++|
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~------------------------------------~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDF------------------------------------LENPISSTGLTPSGNFI 262 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEecc------------------------------------ccCcceeeeecCCCcEE
Confidence 9999999999999998754 4444431 11355678899999999
Q ss_pred EEccccc-eEEEEcccCcEEEE-eCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 235 IYATLLG-IKIVNLHTNKVSRI-LGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 235 i~~s~~g-i~v~d~~t~~~v~~-~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
+++...+ +..+|+.+++++.. +++..+++|.+.+. +...++|+++-|+.+
T Consensus 263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h----------------------------p~~~~las~GLDRyv 314 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH----------------------------PTHPVLASCGLDRYV 314 (412)
T ss_pred EEecccchhheecccCceeeccccCCccCCcceEEEc----------------------------CCCceEEeeccceeE
Confidence 9997765 99999999998877 66666666655553 444589999999999
Q ss_pred EEEecCC
Q 010302 313 YLFSRRE 319 (513)
Q Consensus 313 ~i~~~~~ 319 (513)
+||.-++
T Consensus 315 RIhD~kt 321 (412)
T KOG3881|consen 315 RIHDIKT 321 (412)
T ss_pred EEeeccc
Confidence 9997665
No 256
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.8e-10 Score=109.58 Aligned_cols=158 Identities=17% Similarity=0.090 Sum_probs=113.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc--ce-EEEEeCCCCeEEEEecCCCCCc-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK--AG-LAISDRNSSFVHIYDARADSNE- 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~--~~-~l~s~~~d~~I~iwd~~~~~~~- 76 (513)
+.|||||++||+.+.| ..+||++.++-.+....-...+.....+.|+.++. .+ +++.-..-+.|..|++..+.+.
T Consensus 192 L~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 192 LDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred ceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 5799999999999999 99999999986555544223334456667776651 22 3344444566777776433331
Q ss_pred --ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 77 --PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 77 --~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
..+........|++++.+++|++++.|+.||.|.|++..+.++ ..+.-..|...|+.+.|+||.+
T Consensus 271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~-------------~~~vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 271 FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR-------------LQYVKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee-------------eEeehhhheeeeeeEEEcCCcC
Confidence 1111112335799999999999999999999999998866432 1223345989999999999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 010302 155 QFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~t 172 (513)
++++.+.|.++.+..+.-
T Consensus 338 ~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 338 YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cccccccCCceeEEEEee
Confidence 999999999999887643
No 257
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.2e-09 Score=95.12 Aligned_cols=173 Identities=10% Similarity=0.176 Sum_probs=116.9
Q ss_pred EEEcCCCcceEEEEeCCCCeEEEEecCC--------CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 45 VYKQGDVKAGLAISDRNSSFVHIYDARA--------DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 45 v~~s~~~~~~~l~s~~~d~~I~iwd~~~--------~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
-+++|..+ +++.++.+|.|.+..++. ....++-..++|..+|..++|. ..+|++|+ ||.|+=|.-+.
T Consensus 16 qa~sp~~~--~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 16 QAISPSKQ--YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred HhhCCcce--EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehh
Confidence 35677766 899999999999998752 1123445567999999999997 44677776 59999884332
Q ss_pred CCCCC-cceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCC
Q 010302 117 LQFPE-SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 195 (513)
Q Consensus 117 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 195 (513)
..... .--.|..+... +.-...-..|+++-..|..+.++.++.|+.++-||+++|+..+++.+|.+.+.++
T Consensus 91 ~~es~~~K~lwe~~~P~--~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v------ 162 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPM--QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV------ 162 (325)
T ss_pred hhhhccchhhhhhcCcc--ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee------
Confidence 11100 00001110000 0000111348999999999888888899999999999999999999988664332
Q ss_pred ccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC
Q 010302 196 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 196 ~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
+--+....|++|+.+| +++||..|++++.+++..+
T Consensus 163 ------------------------------v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 163 ------------------------------VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred ------------------------------eecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence 2211223456666665 9999999999999998644
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.6e-09 Score=108.05 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=119.4
Q ss_pred eEecCCCEEEEEeCC---CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC--CeEEEEecCCCCCc
Q 010302 2 QVSVDGLLCCSISND---KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS--SFVHIYDARADSNE 76 (513)
Q Consensus 2 ~~s~dg~~las~s~D---~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d--~~I~iwd~~~~~~~ 76 (513)
+|||||++||..+.+ ..|.+||+.+++...... ..+......|+|+++.++ ++.+.+ ..|.+||+. +++
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la-~~~~~~g~~~Iy~~d~~--~~~ 278 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLA-FVLSKDGNPEIYVMDLA--SRQ 278 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEE-EEEccCCCceEEEEECC--CCC
Confidence 699999999887744 368899998877644332 334455688999998543 333333 468888986 433
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEc-CCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISAD-DKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
...+..+........|+|+|+.++..+ .++ .|.++|+.+++. ..+...........|||||
T Consensus 279 -~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---------------~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 279 -LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---------------ERVTFVGNYNARPRLSADG 342 (430)
T ss_pred -eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---------------EEeecCCCCccceEECCCC
Confidence 444555666677789999999876554 344 466666655321 1111111223457899999
Q ss_pred CEEEEEeCC-C--cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 154 KQFSITSPD-R--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 154 ~~l~s~s~D-~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++|+..+.+ + .|.+||+.+++... +... .......|+|+
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-------------------------------------~~~~~p~~spd 384 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-------------------------------------SLDESPSVAPN 384 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCCCEEE-ccCC-------------------------------------CCCCCceECCC
Confidence 999877643 3 47788888876422 2110 00113479999
Q ss_pred CCEEEEccccc----eEEEEccc
Q 010302 231 SNFLIYATLLG----IKIVNLHT 249 (513)
Q Consensus 231 g~~li~~s~~g----i~v~d~~t 249 (513)
|+.|++.+..+ |.+++...
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCEEEEEEecCCceEEEEEECCC
Confidence 99999987542 66677743
No 259
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=8.5e-09 Score=105.94 Aligned_cols=179 Identities=16% Similarity=0.062 Sum_probs=115.3
Q ss_pred CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC
Q 010302 17 KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP 95 (513)
Q Consensus 17 ~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp 95 (513)
.+|.+||........ +. .+...+....|+|+++.++.++-. .+..|.+||+. .++. ..+..+.....+++|+|
T Consensus 184 ~~l~i~D~~g~~~~~-lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~--~g~~-~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGYNPQT-IL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA--TGQR-ELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCCCCceE-ee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC--CCCE-EEeccCCCCccCceECC
Confidence 468899986544332 22 455678889999999854443321 34579999996 4433 23333444556889999
Q ss_pred CCCEEE-EEcCCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-CCc--EEEEE
Q 010302 96 VFDTVI-SADDKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRR--IRVFW 169 (513)
Q Consensus 96 ~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-D~~--I~iwd 169 (513)
+|+.++ +.+.++ .|.+||+.+++ +..+..+.......+|+|||++|+..+. ++. |.++|
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~---------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQ---------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCC---------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 998774 555555 48888886633 2334444445567899999999987764 444 55666
Q ss_pred cCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----ceEEE
Q 010302 170 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIV 245 (513)
Q Consensus 170 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----gi~v~ 245 (513)
+.+++....... ......+.|+|+|++|++.+.. .|.+|
T Consensus 323 l~~g~~~~lt~~-------------------------------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 323 ASGGSAERLTFQ-------------------------------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred CCCCCeEEeecC-------------------------------------CCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 666554221100 0112357899999999987543 38999
Q ss_pred EcccCcEE
Q 010302 246 NLHTNKVS 253 (513)
Q Consensus 246 d~~t~~~v 253 (513)
|+.+++..
T Consensus 366 d~~~g~~~ 373 (433)
T PRK04922 366 DLSTGSVR 373 (433)
T ss_pred ECCCCCeE
Confidence 99888754
No 260
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1e-08 Score=106.01 Aligned_cols=211 Identities=12% Similarity=0.110 Sum_probs=142.2
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEc---CCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC--CCCc
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRL---PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA--DSNE 76 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l---~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~--~~~~ 76 (513)
.+++.|++.+.+ .+..+.+|+..+.. ...... ..|.-.+.+.+++|.+. +++++..||.|.+|.--. +...
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~--~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNER--YLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccc--eEEEeccCCcEEEEeccccccccc
Confidence 455666665544 45678899988744 221111 12344478899999998 999999999999996432 2223
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
..+.+.=|...|.+++|+++|.+|+||+..+.+-+|.+.+.+ .+-+..-.++|..+.+|||+.+.
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---------------kqfLPRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---------------KQFLPRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC---------------cccccccCCeeEEEEEcCCCCeE
Confidence 445566688999999999999999999999999999887732 23344567789999999999999
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC-EEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLI 235 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~-~li 235 (513)
+....|+.|.+-...+.....++.+-... . .+. ......-.+.++.||.-+ .++
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~--------~-------~~~----------k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPP--------T-------PST----------KTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCC--------C-------ccc----------cccccccceeEEEcCCCCceee
Confidence 99999999999887776654444331100 0 000 000112234567777434 444
Q ss_pred EccccceEEEEcccCcEEEEe
Q 010302 236 YATLLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 236 ~~s~~gi~v~d~~t~~~v~~~ 256 (513)
.+-...|+.||+.+.+.+..+
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred cCCCceEEEEeccccceeeeE
Confidence 444445888888777666544
No 261
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=1.1e-09 Score=114.72 Aligned_cols=204 Identities=11% Similarity=0.105 Sum_probs=135.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC-CcceEE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-NEPLIS 80 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-~~~i~~ 80 (513)
+|.....+|.++|+-+.|+|||+........+-.. ....+..+...-.. ..++++|..||.+++||.+... ...+..
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~-s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG-SSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccC-CCccceeecccccC-CceEEEeecCCceEEeecccCCcccccee
Confidence 45555455556666889999999865554443322 22334444433222 2389999999999999987322 235667
Q ss_pred eecCCCC--eEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccC---CcceEEEEEcCCCC
Q 010302 81 KKVHMGP--VKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS---KTTVSAIEVSPDGK 154 (513)
Q Consensus 81 ~~~h~~~--V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~~spdg~ 154 (513)
.+.|... |..+.+.++|- .|+||+.||.|++||++... .+.......| .+..+++..+++..
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~------------~e~~~~iv~~~~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS------------KETFLTIVAHWEYGSALTALTVHEHAP 1317 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc------------ccccceeeeccccCccceeeeeccCCC
Confidence 7788888 99999998664 49999999999999998731 1112222232 23589999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
.+|+|+. +.|+||++. |+.+..+..+. .+ .........+++|+|.--.+
T Consensus 1318 iiAsGs~-q~ikIy~~~-G~~l~~~k~n~------------~F-----------------~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLS-GEQLNIIKYNP------------GF-----------------MGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred eeeecCc-ceEEEEecC-hhhhcccccCc------------cc-----------------ccCcCCCcceeeecchhHhh
Confidence 9999998 999999975 44444433210 00 11122345788999988888
Q ss_pred EEccccc-eEEEEcccC
Q 010302 235 IYATLLG-IKIVNLHTN 250 (513)
Q Consensus 235 i~~s~~g-i~v~d~~t~ 250 (513)
+.|+.+. |.||....+
T Consensus 1367 AaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhccCCceEEEeecCCc
Confidence 8886554 666655443
No 262
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=9.4e-10 Score=103.67 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=125.2
Q ss_pred CEEEEEeCC--CcEEEEEccCCceeEEEEc-C------CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 8 LLCCSISND--KSVKIYDVVNYDMMLMIRL-P------FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 8 ~~las~s~D--~~v~iwd~~~~~~~~~~~l-~------~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
..+|+||.. ..++|||++..+.+..-+- + ..+-.+..+.|.+......++++..-+.+++||.+ ...+++
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~-~qRRPV 240 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR-HQRRPV 240 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc-ccCcce
Confidence 456778888 8899999987644332210 0 02234566778777555589999999999999997 466899
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
..+.--..+++++...|.++.+++|..-+.+..+|++.++. ....+.+..+.|.++..+|.++++|+
T Consensus 241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-------------~g~~~kg~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-------------LGCGLKGITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred eEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-------------eccccCCccCCcceEEEcCCCceEEe
Confidence 99988889999999999999999999999999999988543 12236778889999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEE
Q 010302 159 TSPDRRIRVFWFRTGKLRR 177 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~ 177 (513)
++.|..+||+|+.+.+++.
T Consensus 308 ~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eccceeEEEeecccchhhh
Confidence 9999999999999966644
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.09 E-value=1.7e-09 Score=102.45 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=112.3
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCce-eEEEEcCCCCCcEEEEEEcCCCcce-EEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDM-MLMIRLPFIPGAVEWVYKQGDVKAG-LAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~-~~~~~l~~~~~~v~~v~~s~~~~~~-~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
..+++|+++|.+..++...+++...... .........+.....+.+..+.... +....+....+.+|... .+.+ .
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--~~~~-~ 145 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD--SGRC-E 145 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc--ccCc-c
Confidence 4578899999998888877777764332 1111111222333344444333322 44455566677777765 3333 3
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s 158 (513)
.+-+|-+-++.++|+||++++++++.|..|++-.... .-.+..+. +|+.-|..++.-++ +.|++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--------------~f~IesfclGH~eFVS~isl~~~-~~LlS 210 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--------------TFVIESFCLGHKEFVSTISLTDN-YLLLS 210 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--------------ccchhhhccccHhheeeeeeccC-ceeee
Confidence 3449999999999999999999999999999864432 11233343 59999999998654 45899
Q ss_pred EeCCCcEEEEEcCCCeEEEEeccc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~ 182 (513)
+|.|+++++||+++|+++.+++-.
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred cCCCCcEEEEecccCCcccccchh
Confidence 999999999999999999887643
No 264
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.7e-10 Score=112.46 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=120.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.|+|...+|+.++ ...|+|||+....++..+. .....+..++.++.|. -++.++.|+.++.+|+.. +.++.++
T Consensus 572 v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~--tg~kwiS~msihp~GD--nli~gs~d~k~~WfDldl-sskPyk~ 645 (733)
T KOG0650|consen 572 VKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLL--TGSKWISSMSIHPNGD--NLILGSYDKKMCWFDLDL-SSKPYKT 645 (733)
T ss_pred EEecCCCceEEEEe-ccceEEEehhHHHHHHHHh--cCCeeeeeeeecCCCC--eEEEecCCCeeEEEEccc-CcchhHH
Confidence 46888888887766 4689999998765544432 3345677888888888 677788999999999963 5678889
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCC-CCCcceeeeecCCccccccccCCcc----eEEEEEcCCCCE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ-FPESEVSFRLKSDTNLFEILKSKTT----VSAIEVSPDGKQ 155 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----v~~v~~spdg~~ 155 (513)
+..|...+++++|++...+|+||+.||++.|+.-.-+. +..+. .-.++..+.+|... |..++|+|...+
T Consensus 646 lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp------liVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP------LIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred hhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC------ceEeeeeccCceeecccceEeecccCCCce
Confidence 99999999999999999999999999999988321110 00000 01345667777655 899999999999
Q ss_pred EEEEeCCCcEEEE
Q 010302 156 FSITSPDRRIRVF 168 (513)
Q Consensus 156 l~s~s~D~~I~iw 168 (513)
|.+++.|++|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
No 265
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.3e-08 Score=95.14 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=93.2
Q ss_pred CeEecCC-CEEEEEeCCCcEEEEEccC-Ccee-----------EEEEcCCCCCcEEEEEEcCCCcceEEEEeC-CCCeEE
Q 010302 1 MQVSVDG-LLCCSISNDKSVKIYDVVN-YDMM-----------LMIRLPFIPGAVEWVYKQGDVKAGLAISDR-NSSFVH 66 (513)
Q Consensus 1 v~~s~dg-~~las~s~D~~v~iwd~~~-~~~~-----------~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~ 66 (513)
|+|-|.+ .-||.|+ -+-|.||.... .... ..++-++| ..|.+++|.+++. .+++++ .|..|.
T Consensus 146 lawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~ 221 (445)
T KOG2139|consen 146 LAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIM 221 (445)
T ss_pred EEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEE
Confidence 4677765 4555555 45688998752 1111 11222222 4689999999988 555544 578899
Q ss_pred EEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 67 IYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
|||+..+...++. ....+.++-+.||||+.+|..+.-|+..++|+..... +...-. ...+.|..
T Consensus 222 iWdpdtg~~~pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-------------t~erw~-lgsgrvqt 285 (445)
T KOG2139|consen 222 IWDPDTGQKIPLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-------------TKERWI-LGSGRVQT 285 (445)
T ss_pred EEcCCCCCccccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc-------------eeccee-ccCCceee
Confidence 9999844444443 3445678899999999999999999999999553311 111111 23348999
Q ss_pred EEEcCCCCEEEEEe
Q 010302 147 IEVSPDGKQFSITS 160 (513)
Q Consensus 147 v~~spdg~~l~s~s 160 (513)
.+|+|+|++|+..+
T Consensus 286 acWspcGsfLLf~~ 299 (445)
T KOG2139|consen 286 ACWSPCGSFLLFAC 299 (445)
T ss_pred eeecCCCCEEEEEE
Confidence 99999999877554
No 266
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7e-09 Score=97.59 Aligned_cols=269 Identities=13% Similarity=0.092 Sum_probs=160.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI- 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~- 79 (513)
++|....+++.+|+.+++|...|+++.+.+.+..-....+.|..+..+|..+ .+++.+.++.|.+||.+.. ..++.
T Consensus 111 L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~-~~~~~~ 187 (609)
T KOG4227|consen 111 LEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDR-QNPISL 187 (609)
T ss_pred EEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCC-CCCCce
Confidence 4677788999999999999999999988777766555556899999888865 8888889999999999722 21222
Q ss_pred -EeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 80 -SKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 -~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
.+.........+.|+| ...+|++.+..+-+.+||.+...-|.. .+.+ ...+......-.++.|+|+|+.|+
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~--~~~~-----~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY--QRSM-----FKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH--hhhc-----cccCcccchhhhheeeCCCCCeeh
Confidence 2224445678899999 566788999888899999976432211 0000 001111112235688999999998
Q ss_pred EEeCCCcEEEEEcCCCeEE-EEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 158 ITSPDRRIRVFWFRTGKLR-RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
+--....=.+||+.+.+|. .+++... +..+. .....+++|-.+ .-+++
T Consensus 261 siRR~~~P~~~D~~S~R~~V~k~D~N~----------~GY~N--------------------~~T~KS~~F~~D-~~v~t 309 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCFVLKSDHNP----------NGYCN--------------------IKTIKSMTFIDD-YTVAT 309 (609)
T ss_pred hhhccCCCEEeeeecccceeEeccCCC----------Cccee--------------------eeeeeeeeeecc-eeeec
Confidence 7665555667788775553 2222110 00000 011235566543 33777
Q ss_pred cccc-ceEEEEcccCcE---EEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 237 ATLL-GIKIVNLHTNKV---SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 237 ~s~~-gi~v~d~~t~~~---v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
|+.+ +|+||-+-...- ...+|.++.... ..+.+ .+....+..+-|-.+.+..++.+ .|+||.+-.+.|
T Consensus 310 GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~-~~~~i------~~~~~VLrGHRSv~NQVRF~~H~-~~l~SSGVE~~~ 381 (609)
T KOG4227|consen 310 GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP-SEIFI------EKELTVLRGHRSVPNQVRFSQHN-NLLVSSGVENSF 381 (609)
T ss_pred cCcccceEEEecCCCccccCccccCcchhhCc-hhhee------cceeEEEecccccccceeecCCc-ceEeccchhhhe
Confidence 7765 899998743221 122454331110 00000 01122233333335555555444 456666666699
Q ss_pred EEEecC
Q 010302 313 YLFSRR 318 (513)
Q Consensus 313 ~i~~~~ 318 (513)
.||+..
T Consensus 382 KlWS~~ 387 (609)
T KOG4227|consen 382 KLWSDH 387 (609)
T ss_pred eccccc
Confidence 999854
No 267
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.05 E-value=2.3e-08 Score=99.65 Aligned_cols=188 Identities=17% Similarity=0.193 Sum_probs=117.8
Q ss_pred cceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCC
Q 010302 52 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 131 (513)
Q Consensus 52 ~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 131 (513)
..+++++...++.|.+.|.. +.+.+.++.........+.|+|||+++++++.|+.|.++|+.+.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~------------- 69 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK------------- 69 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------------
T ss_pred ccEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------------
Confidence 34567788889999999997 888999998655545568899999999999999999999998843
Q ss_pred ccccccccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEecccHHHH-------HHHhc-CCCCccccccc
Q 010302 132 TNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVA-------QDLQR-SDAPLYRLEAI 202 (513)
Q Consensus 132 ~~~~~~~~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~~~~~~~i-------~~~~~-~~~~~~~l~~~ 202 (513)
.+.++.. .....++++|+||+++++++ .++.+.++|.++.+.++++....... ..+-. +..+.+.+.-.
T Consensus 70 -~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 70 -VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp -EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred -EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 3444433 33478899999999999877 58999999999999998875322111 01111 11122222222
Q ss_pred cccceeeee----eec---cccCCCCCCceEEcCCCCEEEEcc--ccceEEEEcccCcEEEEe
Q 010302 203 DFGRRMAVE----KEI---EKTETAPPSNAIFDESSNFLIYAT--LLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 203 ~~~~r~~~e----~e~---~~~~~~~~~~i~fd~~g~~li~~s--~~gi~v~d~~t~~~v~~~ 256 (513)
+.++-..+. +.+ .......+....|+++|+|++.+. ...|-++|..+++.+..+
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 222222111 000 011223445689999999887754 345889999999888766
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=2.1e-07 Score=95.40 Aligned_cols=178 Identities=13% Similarity=0.080 Sum_probs=112.4
Q ss_pred cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe-CCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCC
Q 010302 18 SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD-RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV 96 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~-~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~ 96 (513)
.|.++|.......... .+...+....|+|+++.++.++- .....|++||+. +++. ..+..+...+.+++|+|+
T Consensus 171 ~l~~~d~~g~~~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~--~g~~-~~~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA--TGQR-EKVASFPGMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC--CCCE-EEeecCCCCccceEECCC
Confidence 5778887644433322 34456788899999985433321 223579999996 4433 333445566778999999
Q ss_pred CCEEE-EEcCCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEEc
Q 010302 97 FDTVI-SADDKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DR--RIRVFWF 170 (513)
Q Consensus 97 ~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-D~--~I~iwd~ 170 (513)
++.|+ +.+.++ .|.+||+.+.. ...+..+.......+|+|||++|+..+. ++ .|.++|+
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~---------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQ---------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCC---------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 98775 455544 47778876532 2233334444556789999999887664 33 5777777
Q ss_pred CCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----ceEEEE
Q 010302 171 RTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVN 246 (513)
Q Consensus 171 ~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----gi~v~d 246 (513)
.+++....... ......+.|+++|++|++.+.. .|.++|
T Consensus 310 ~~~~~~~l~~~-------------------------------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 310 DGGEVRRLTFR-------------------------------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCCCEEEeecC-------------------------------------CCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 76654221100 0122467899999999988755 378888
Q ss_pred cccCcEE
Q 010302 247 LHTNKVS 253 (513)
Q Consensus 247 ~~t~~~v 253 (513)
+.++...
T Consensus 353 ~~~~~~~ 359 (417)
T TIGR02800 353 LDGGGER 359 (417)
T ss_pred CCCCCeE
Confidence 8876543
No 269
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.02 E-value=5.3e-10 Score=107.37 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=114.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|-|.--+|++++..|.++--|+.+|+++..+.. ..+.+..++-.|.+. ++-.|..+|+|.+|... +.+++..+
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t--~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~--skePLvKi 289 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT--GAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPN--SKEPLVKI 289 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHc--cCCccchhhcCCccc--eEEEcCCCceEEecCCC--CcchHHHH
Confidence 4566777899999999999999999998877653 345566666666666 88999999999999997 78888888
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+|.++|.++++.++|+++++++.|..++|||++.... +.+... ..+...+++|..| ++..|.
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------------l~t~~t-p~~a~~ls~Sqkg--lLA~~~ 352 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------------LHTYRT-PHPASNLSLSQKG--LLALSY 352 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--------------cceeec-CCCcccccccccc--ceeeec
Confidence 89999999999999999999999999999999988432 222222 2356778887655 344456
Q ss_pred CCcEEEEE
Q 010302 162 DRRIRVFW 169 (513)
Q Consensus 162 D~~I~iwd 169 (513)
...+.||.
T Consensus 353 G~~v~iw~ 360 (545)
T KOG1272|consen 353 GDHVQIWK 360 (545)
T ss_pred CCeeeeeh
Confidence 66788884
No 270
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.8e-07 Score=94.80 Aligned_cols=179 Identities=12% Similarity=0.019 Sum_probs=111.8
Q ss_pred cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCC
Q 010302 18 SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV 96 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~ 96 (513)
.|.++|...+...... .+...+....|+|+++.+..++-. ....|.+||+. +++. ..+......+....|+|+
T Consensus 180 ~l~~~d~~g~~~~~l~---~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~--~g~~-~~l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGARAVTLL---QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD--TGRR-EQITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCCceEEe---cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC--CCCE-EEccCCCCCcCCeEECCC
Confidence 4777787655433222 345668889999999854333322 23468899996 4433 233333344567899999
Q ss_pred CCEEE-EEcCCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEEc
Q 010302 97 FDTVI-SADDKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DR--RIRVFWF 170 (513)
Q Consensus 97 ~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-D~--~I~iwd~ 170 (513)
|+.|+ +.+.++ .|.+||+.+++ ...+..+........|+|||+.|+..+. ++ .|.++|+
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQ---------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 99876 555555 46777886632 2233344445567889999998876663 33 5777777
Q ss_pred CCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----ceEEEE
Q 010302 171 RTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVN 246 (513)
Q Consensus 171 ~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----gi~v~d 246 (513)
.+++..+.... ........|+|+|++|++.+.. .|.++|
T Consensus 319 ~~g~~~~lt~~-------------------------------------~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 319 NGGRAERVTFV-------------------------------------GNYNARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred CCCCEEEeecC-------------------------------------CCCccceEECCCCCEEEEEEccCCceEEEEEE
Confidence 77764322100 0011346799999999987643 277889
Q ss_pred cccCcEEE
Q 010302 247 LHTNKVSR 254 (513)
Q Consensus 247 ~~t~~~v~ 254 (513)
+.+++...
T Consensus 362 l~tg~~~~ 369 (430)
T PRK00178 362 LQRGSVRI 369 (430)
T ss_pred CCCCCEEE
Confidence 88876533
No 271
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=4.2e-09 Score=101.91 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=160.5
Q ss_pred CCEEEEEeCCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee-cC
Q 010302 7 GLLCCSISNDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VH 84 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-~h 84 (513)
.+-|++++.||.|++=.+. ++.......+..|.+++..++.-|+... .+.+++.|+.+.-.|++........... .+
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence 4568999999999987664 4555557777889999999999887664 7788899999999999833332222222 33
Q ss_pred CC---CeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc------CCcceEEEEEcCCCC
Q 010302 85 MG---PVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK------SKTTVSAIEVSPDGK 154 (513)
Q Consensus 85 ~~---~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~v~~spdg~ 154 (513)
.. ...+++.+| +...+++++.|..++++|.+....-.. ...+..+.. ....|++++|+.++.
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~--------n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN--------NGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc--------cchhhhcCCccccccCcccceeEEecCCcc
Confidence 33 467888898 455899999999999999876432111 111222222 234589999998877
Q ss_pred EEEEEeCCCcEEEEEcCC--CeE----------EEE-ecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCC
Q 010302 155 QFSITSPDRRIRVFWFRT--GKL----------RRV-YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 221 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~t--g~~----------~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~ 221 (513)
-|.++-.|-.|++|.-.- |.. ++. |++|.. ...
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN----------------------------------~~T 395 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN----------------------------------SRT 395 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccc----------------------------------ccc
Confidence 666666788899984221 210 011 111110 011
Q ss_pred CCce-EEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCC
Q 010302 222 PSNA-IFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD 299 (513)
Q Consensus 222 ~~~i-~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 299 (513)
+..+ -|-|...|+++|++-| |-||+-.++++++.+.++.. + + +....+|..
T Consensus 396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~---V--V----------------------NCLEpHP~~ 448 (559)
T KOG1334|consen 396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH---V--V----------------------NCLEPHPHL 448 (559)
T ss_pred cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc---e--E----------------------eccCCCCCC
Confidence 2222 4678889999999988 99999999999888865541 1 1 122233556
Q ss_pred CeEEEeeecCceEEEEecCC
Q 010302 300 PTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 300 ~~l~~s~~~~~~i~i~~~~~ 319 (513)
|. +||.+-+.-|.||+..+
T Consensus 449 Pv-LAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 449 PV-LASSGIDHDVKIWTPLT 467 (559)
T ss_pred ch-hhccCCccceeeecCCc
Confidence 65 56666677999998754
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.98 E-value=1e-06 Score=87.60 Aligned_cols=253 Identities=16% Similarity=0.146 Sum_probs=149.4
Q ss_pred CeEecCCCEEEEEeC----CCcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISN----DKSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~----D~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
|+++|++++|.++.. ++.|..|.+.. +.+...-.........+.+..++++.. ++++...++.+.++++.. .
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~l~~-~ 119 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFPLDD-D 119 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEEECT-T
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEEccC-C
Confidence 478999999998876 57899998876 344433333334456788999998873 555666799999999972 2
Q ss_pred CcceEE---ee----------cCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCccccccc-c
Q 010302 75 NEPLIS---KK----------VHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-K 139 (513)
Q Consensus 75 ~~~i~~---~~----------~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (513)
+..... +. .......++.|+|+++++++.. ....|.+|++...... -.....+. .
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~----------l~~~~~~~~~ 189 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK----------LTPVDSIKVP 189 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T----------EEEEEEEECS
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce----------EEEeeccccc
Confidence 333322 11 1234578999999999887765 3446888877553210 00011121 2
Q ss_pred CCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccc
Q 010302 140 SKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFR--TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 216 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~--tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~ 216 (513)
.......++|+|+++++.+.+ .+++|.+|++. ++++...-.-. .+.. ..
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~---------------~~~~-------------~~ 241 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS---------------TLPE-------------GF 241 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE---------------SCET-------------TS
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee---------------eccc-------------cc
Confidence 445689999999999886665 58899999988 55432211100 0000 00
Q ss_pred cCCCCCCceEEcCCCCEEEEcccc--ceEEEEcc--cCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccccccc
Q 010302 217 TETAPPSNAIFDESSNFLIYATLL--GIKIVNLH--TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 292 (513)
Q Consensus 217 ~~~~~~~~i~fd~~g~~li~~s~~--gi~v~d~~--t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
........+.++|+|++|..+... .|-++++. +|++..+ +.-. . .| .....+.++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~-~~~~---------~-~G----~~Pr~~~~s------ 300 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV-QTVP---------T-GG----KFPRHFAFS------ 300 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE-EEEE---------E-SS----SSEEEEEE-------
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE-EEEe---------C-CC----CCccEEEEe------
Confidence 001134568899999998887543 58888883 4443322 1100 0 00 011222221
Q ss_pred CCCCCCCCeEEEeeecCceEEEEecC
Q 010302 293 SKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 293 ~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+....|+++.-++++|.+|.+.
T Consensus 301 ----~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 301 ----PDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ----TTSSEEEEEETTTTEEEEEEEE
T ss_pred ----CCCCEEEEEecCCCeEEEEEEe
Confidence 3555677777888899999764
No 273
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=4.6e-09 Score=110.32 Aligned_cols=147 Identities=16% Similarity=0.088 Sum_probs=122.3
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-Ee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI-SK 81 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~-~~ 81 (513)
++++.-++++|+--+.|.+|+.. .+.... .+.+|.+.+..+.++.++. ++++.+.|.++++|++. +.+... +.
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~-~dn~p~-~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~--s~~~~~~~~ 214 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPH-EDNKPI-RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPID--SREVLGCTG 214 (967)
T ss_pred ccCcEEEEEeccccccEEEEecc-ccCCcc-eecccCCceEEEEEccCCc--EEEEEecCcceeeeecc--cccccCccc
Confidence 45666789999999999999987 222222 5668999999999999999 99999999999999997 554444 44
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc-eEEEEEcCCCCEEEEEe
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT-VSAIEVSPDGKQFSITS 160 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~spdg~~l~s~s 160 (513)
-+|+..|..+.|.|+ .++++++|.+.++|+... +.+..+..|... ++.++.+++....+|++
T Consensus 215 fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~---------------~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG---------------TQLEVYDEHSGKGIWKIAVPIGVIIKVTGG 277 (967)
T ss_pred ccccceeEEEEeccc--eeEEeccceEEEEEeccc---------------ceehhhhhhhhcceeEEEEcCCceEEEeec
Confidence 599999999999998 999999999999996643 334466666544 99999999999999999
Q ss_pred CCCcEEEEEcCC
Q 010302 161 PDRRIRVFWFRT 172 (513)
Q Consensus 161 ~D~~I~iwd~~t 172 (513)
.|+.+++|++..
T Consensus 278 ~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 278 NDSTLKLWDLNG 289 (967)
T ss_pred cCcchhhhhhhc
Confidence 999999999865
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=1.2e-07 Score=88.15 Aligned_cols=225 Identities=11% Similarity=0.130 Sum_probs=137.0
Q ss_pred eEecCC--CEEEEEeCCCcEEEEEccCCceeE---------------EE-------------------EcCCCCCcEEEE
Q 010302 2 QVSVDG--LLCCSISNDKSVKIYDVVNYDMML---------------MI-------------------RLPFIPGAVEWV 45 (513)
Q Consensus 2 ~~s~dg--~~las~s~D~~v~iwd~~~~~~~~---------------~~-------------------~l~~~~~~v~~v 45 (513)
.|-+++ ..++....|++|++|-+....... .+ --..|+.+++++
T Consensus 91 rw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 91 RWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI 170 (433)
T ss_pred eecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee
Confidence 455554 456666789999999886422111 00 023577788899
Q ss_pred EEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE--eecC-----CCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCC
Q 010302 46 YKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS--KKVH-----MGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTL 117 (513)
Q Consensus 46 ~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~--~~~h-----~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~ 117 (513)
++..+.. .++|+ .|-.|-+|++... .+.... ++.+ +.-|++..|+|. -+.|+-.+..|+|++.|++..
T Consensus 171 S~NsD~E--t~lSA-DdLRINLWnlei~-d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 171 SVNSDKE--TFLSA-DDLRINLWNLEII-DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred eecCccc--eEeec-cceeeeecccccc-CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 8888877 56664 5678999998632 222221 2222 245889999995 467777888999999999843
Q ss_pred CCCCc-ceeeeec-CCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEEEEecccHHHHHHHhcCCC
Q 010302 118 QFPES-EVSFRLK-SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWF-RTGKLRRVYDESLEVAQDLQRSDA 194 (513)
Q Consensus 118 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~-~tg~~~~~~~~~~~~i~~~~~~~~ 194 (513)
.+=.. .-.|... .+....-+..--..|..+.||++|+++++-. =-+|++||+ ...+.+.++.-|...-..++..
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~l-- 323 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSL-- 323 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHH--
Confidence 21000 0001100 1111111222335688999999999998643 268999999 4567777776655433322210
Q ss_pred CccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcE
Q 010302 195 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKV 252 (513)
Q Consensus 195 ~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~ 252 (513)
| +......-.-++|+-++.++++|++.. .+|++...|..
T Consensus 324 --Y-----------------EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 324 --Y-----------------ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred --h-----------------hccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 1 001111224578999999999999886 68999766654
No 275
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=7.2e-07 Score=91.83 Aligned_cols=178 Identities=17% Similarity=0.125 Sum_probs=107.7
Q ss_pred cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCC
Q 010302 18 SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV 96 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~ 96 (513)
.+.++|.......... .....+....|+|+++.+..++.. ....|.+||+. +++. ..+..........+|+|+
T Consensus 199 ~l~i~d~dG~~~~~l~---~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~--tg~~-~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQMLL---RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY--TQVR-EKVTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCceEee---cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC--CCCe-EEecCCCCCcCCeeECCC
Confidence 5666777554432222 345677889999999864444332 23468888986 4433 222222233457899999
Q ss_pred CCEEE-EEcCCCc--EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEEc
Q 010302 97 FDTVI-SADDKGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DR--RIRVFWF 170 (513)
Q Consensus 97 ~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-D~--~I~iwd~ 170 (513)
|+.|+ +.+.++. |.+||+.+++ ...+..+.......+|+|||++|+..+. ++ .|.++|+
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~---------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKA---------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCC---------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 99875 4566665 5566775532 2333444455677899999998876663 33 4666677
Q ss_pred CCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----ceEEEE
Q 010302 171 RTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVN 246 (513)
Q Consensus 171 ~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----gi~v~d 246 (513)
.+++....... .......+|+|+|++|++.+.. .|.++|
T Consensus 338 ~~g~~~~Lt~~-------------------------------------g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 338 ASGKVSRLTFE-------------------------------------GEQNLGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred CCCCEEEEecC-------------------------------------CCCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 77664332100 0011245799999999987543 256678
Q ss_pred cccCcEE
Q 010302 247 LHTNKVS 253 (513)
Q Consensus 247 ~~t~~~v 253 (513)
+.+++..
T Consensus 381 l~~g~~~ 387 (448)
T PRK04792 381 LETGAMQ 387 (448)
T ss_pred CCCCCeE
Confidence 7777643
No 276
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.92 E-value=8.5e-10 Score=112.81 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=102.9
Q ss_pred CCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC
Q 010302 36 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 115 (513)
Q Consensus 36 ~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~ 115 (513)
-+|-..|.++.|...+. +++++++|..++||... +..++....+|.+.|+.++.+.+.-.++++|.|..|++|-+.
T Consensus 187 lgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred Hhhhhheeeeeeccccc--eEeecCccceeeeeecc--chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 35667788888877777 99999999999999987 889999999999999999999988899999999999999887
Q ss_pred CCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 116 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
+ +.++..+.+|.+.|++++|+|-. +.+.||++++||.+
T Consensus 263 ~--------------~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 D--------------GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred C--------------CchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 7 67788999999999999999965 66789999999987
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=5e-07 Score=91.76 Aligned_cols=191 Identities=12% Similarity=0.043 Sum_probs=115.5
Q ss_pred eEecCCCE-EEEEeC---CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe-CCCCeEEEEecCCCCCc
Q 010302 2 QVSVDGLL-CCSISN---DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD-RNSSFVHIYDARADSNE 76 (513)
Q Consensus 2 ~~s~dg~~-las~s~---D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~-~~d~~I~iwd~~~~~~~ 76 (513)
+|||||+. ++..+. +..|.++|+.+++...... .++......|+|++..+++... ..+..|.++|+. .++
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~--~g~ 268 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN--TKT 268 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC--CCc
Confidence 69999985 665543 3568889998887655443 3455666789999986543332 334668888875 443
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEc-CCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISAD-DKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
...+..+........|+|||+.|+-.+ ..+ .|.+.|+.+++ . ..+...... ...|||||
T Consensus 269 -~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~--------------~-~rlt~~g~~--~~~~SPDG 330 (419)
T PRK04043 269 -LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS--------------V-EQVVFHGKN--NSSVSTYK 330 (419)
T ss_pred -EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--------------e-EeCccCCCc--CceECCCC
Confidence 444544444345678999998776554 334 35555665532 1 111111111 24899999
Q ss_pred CEEEEEeCC---------CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCc
Q 010302 154 KQFSITSPD---------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSN 224 (513)
Q Consensus 154 ~~l~s~s~D---------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~ 224 (513)
++|+..+.. ..|.+.|+.++... .+.. . .....
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~-----------------------------------~--~~~~~ 372 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA-----------------------------------N--GVNQF 372 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC-----------------------------------C--CCcCC
Confidence 999876643 25666677666542 2211 0 01124
Q ss_pred eEEcCCCCEEEEccccc----eEEEEcccCcEE
Q 010302 225 AIFDESSNFLIYATLLG----IKIVNLHTNKVS 253 (513)
Q Consensus 225 i~fd~~g~~li~~s~~g----i~v~d~~t~~~v 253 (513)
..|+|+|+.|++.+..+ +.++++..+...
T Consensus 373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 67999999999886542 667777554433
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=1.4e-06 Score=84.44 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=131.6
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCC-eEEEEecCCCCCcceEEeecC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSS-FVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~-~I~iwd~~~~~~~~i~~~~~h 84 (513)
+|.++|..|. |...|.+...+-.++. .+++.+....+..+++ -.+.|..|+ .+-|+|.. +..+..+...
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv----~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~---~~e~kr~e~~ 400 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV----GKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKD---GGEVKRIEKD 400 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc----CCCCceEEEEEccCCc--ceEEeccCCceEEEEecC---CceEEEeeCC
Confidence 7899999885 4566665544333332 4567799999888887 556666777 89999995 4455666777
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC--
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-- 162 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D-- 162 (513)
-+.|.++..+|+|++++.+.....+-+.|+.++. ....-+...+-|..++|||+++++|-+--+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngn--------------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN--------------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC--------------eeEecccccceeEEEEEcCCceeEEEecCcce
Confidence 8899999999999999999877777777887743 222222345679999999999999976654
Q ss_pred --CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 163 --RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 163 --~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
..|+++|+..++....-.+. ..-.+.+||++|++|.+-+..
T Consensus 467 ~tq~Iklydm~~~Kiy~vTT~t-------------------------------------a~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVTTPT-------------------------------------AYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred eeeeEEEEecCCCeEEEecCCc-------------------------------------ccccCcccCCCCcEEEEEecc
Confidence 57999999999886643221 112345799999999987653
Q ss_pred ceEEEEcccCcEEEE
Q 010302 241 GIKIVNLHTNKVSRI 255 (513)
Q Consensus 241 gi~v~d~~t~~~v~~ 255 (513)
-+|..+.+++..
T Consensus 510 ---sLdPs~Drv~fn 521 (668)
T COG4946 510 ---SLDPSNDRVIFN 521 (668)
T ss_pred ---ccCCCCCeeEEE
Confidence 234444444433
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=9e-09 Score=113.20 Aligned_cols=187 Identities=14% Similarity=0.162 Sum_probs=145.7
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
+|.-.+.+||+.||.|++|....++.+...+..+. ..+..+.|+..|+ ....+..||.+.+|.. +.++....++
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~---~pk~~~s~qc 2290 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA---SPKPYTSWQC 2290 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCC--ceeeeccCCceeeccc---CCcceecccc
Confidence 35567888999999999999998888888776555 7788888988888 6666678999999998 5788888889
Q ss_pred CCCCeEEEEEcCCCCEEEEEc---CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 84 HMGPVKVMRYNPVFDTVISAD---DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
|....+...|-- ..+++++ .++.+.+||..-... ...+. ..|.+.++++++-|..+.|++|+
T Consensus 2291 hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-----------~s~v~--~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2291 HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-----------NSLVH--TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred CCccccceeeee--hhhhccccCCCCCcccchhcccCcc-----------cceee--eecCCCceEEEEcCcceEEEecC
Confidence 999888888855 4556654 467899998733110 11222 67999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.+|.|++||++..++++++.. +| ...+++.++..
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~---------------------------------------------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------------------------------------------LD-TREYFVTGSSE 2389 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh---------------------------------------------hh-hhheeeccCcc
Confidence 999999999998877665532 33 44567777665
Q ss_pred c-eEEEEcccCcEEEEeC
Q 010302 241 G-IKIVNLHTNKVSRILG 257 (513)
Q Consensus 241 g-i~v~d~~t~~~v~~~g 257 (513)
| |+||.+..=..++.+-
T Consensus 2390 g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cceEEEEccccchhhcCc
Confidence 5 9999998777777663
No 280
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.88 E-value=1.1e-06 Score=87.43 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=130.4
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccC-CceeEEEEcC-----------CCCCcEEEEEEcCCCcceEEEEeCCCCeEEE
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVN-YDMMLMIRLP-----------FIPGAVEWVYKQGDVKAGLAISDRNSSFVHI 67 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~-~~~~~~~~l~-----------~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~i 67 (513)
++++|+|++|+++. .+++|.++++.. +.......+. ....+..++.++|+++. ++++.-....|.+
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~-v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF-VYVPDLGADRVYV 170 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE-EEEEETTTTEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE-EEEEecCCCEEEE
Confidence 46889999999987 489999999986 4433332111 12357889999999885 4455555668999
Q ss_pred EecCCCCCcc--eEEee-cCCCCeEEEEEcCCCCEEEE-EcCCCcEEEecCCCCCCCCcceeeeecCCccccccc---cC
Q 010302 68 YDARADSNEP--LISKK-VHMGPVKVMRYNPVFDTVIS-ADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL---KS 140 (513)
Q Consensus 68 wd~~~~~~~~--i~~~~-~h~~~V~~l~~sp~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 140 (513)
|++....++. ...+. .....-..++|+|+++++.. .-.+++|.++++..... .+. ..+.+..+. ..
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-----~~~--~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG-----SLT--EIQTISTLPEGFTG 243 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-----EEE--EEEEEESCETTSCS
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-----cee--EEEEeeeccccccc
Confidence 9997333222 22232 33345688999999998854 45678899997762110 000 001111111 11
Q ss_pred CcceEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc
Q 010302 141 KTTVSAIEVSPDGKQFSITS-PDRRIRVFWFR--TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 217 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~--tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~ 217 (513)
......+++||||++|.++. .+..|.+|++. +|++...-. + ..
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~---------------------------------~-~~ 289 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT---------------------------------V-PT 289 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE---------------------------------E-EE
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE---------------------------------E-eC
Confidence 23688999999999987666 57889999983 344422110 0 01
Q ss_pred CCCCCCceEEcCCCCEEEEcccc--ceEEEEc--ccCcEEEE
Q 010302 218 ETAPPSNAIFDESSNFLIYATLL--GIKIVNL--HTNKVSRI 255 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~--gi~v~d~--~t~~~v~~ 255 (513)
....+..++++++|++|+.+... .|.+|++ .+|++..+
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 12235688999999999988644 5888765 57765444
No 281
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.88 E-value=1.6e-07 Score=100.42 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=110.6
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCc-------eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYD-------MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~-------~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
..++|+.+|.++.||.|++.++.... ......+.....-+..-++........++.+...+.|..||++ ..
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r--~~ 1183 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR--MR 1183 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch--hh
Confidence 45678999999999999999986521 1111122222222333334333333367777778889999997 44
Q ss_pred cceEEee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcCC
Q 010302 76 EPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPD 152 (513)
Q Consensus 76 ~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~spd 152 (513)
.-+.+++ ...+.|++++.+|.++++++|...|.+-+||++= +.++..... +..++..++.+|-
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF--------------~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF--------------RVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec--------------CceeecccCcccCCcceEEeecc
Confidence 4444433 4457899999999999999999999999999964 233333332 4467777777763
Q ss_pred C---CEEEEEe--CCCcEEEEEcCCCeEEEEeccc
Q 010302 153 G---KQFSITS--PDRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 153 g---~~l~s~s--~D~~I~iwd~~tg~~~~~~~~~ 182 (513)
. ...++++ ..+.|.+|++.+|.+..++-.+
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 3 3444444 5788999999999887776543
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=8.3e-06 Score=77.09 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=150.1
Q ss_pred CeEecCCCEEEEEeC---CCcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSISN---DKSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s~---D~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
|+|+|++++|.++.. ++.|-.|.+.. |.+...-+......+.+.++.+++++. ++++....+.|.++-++. .+
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~-vf~AnY~~g~v~v~p~~~-dG 122 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRF-VFVANYHSGSVSVYPLQA-DG 122 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCE-EEEEEccCceEEEEEccc-CC
Confidence 579999999988864 57788877764 444332222222233488899888872 444555678999998863 23
Q ss_pred cceEE--eecCCCC----------eEEEEEcCCCCEEEEEcC-CCcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 76 EPLIS--KKVHMGP----------VKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 76 ~~i~~--~~~h~~~----------V~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
.+... ...|... +.+..+.|++++|++.+- -..|.+|++..+.+-.. ....+ ....
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~----------~~~~v-~~G~ 191 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA----------DPAEV-KPGA 191 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc----------ccccc-CCCC
Confidence 33222 2245554 889999999999988772 23588898876544111 11111 3445
Q ss_pred ceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCC
Q 010302 143 TVSAIEVSPDGKQFSITS-PDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA 220 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~ 220 (513)
....|.|+|++++....+ .+++|-+|..... ..+..+.... .++.. | ....
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~--------------tlP~d-F------------~g~~ 244 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID--------------TLPED-F------------TGTN 244 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec--------------cCccc-c------------CCCC
Confidence 688999999999887666 5999999998773 2222221100 01100 0 1112
Q ss_pred CCCceEEcCCCCEEEEcccc--ceEEEEcc--cCcEEEEeCCCC--cc-chhheeccccCCcCCcceeeeeccccccccC
Q 010302 221 PPSNAIFDESSNFLIYATLL--GIKIVNLH--TNKVSRILGKVE--NN-DRFLRIALYQGDRSSKKVRKIPAAAANANES 293 (513)
Q Consensus 221 ~~~~i~fd~~g~~li~~s~~--gi~v~d~~--t~~~v~~~g~~~--~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (513)
....|..+++|+||..+... .|-++.+. +|+ +..++... +. -|.+.++
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~------------------------ 299 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN------------------------ 299 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC------------------------
Confidence 33467789999998877543 35555443 343 33332211 11 2322222
Q ss_pred CCCCCCCeEEEeeecCceEEEEecC
Q 010302 294 KEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 294 ~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+....|+|..=+...|-+|.+.
T Consensus 300 ---~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 300 ---PSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred ---CCCCEEEEEccCCCcEEEEEEc
Confidence 3566677777777789999755
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=6.2e-06 Score=93.02 Aligned_cols=281 Identities=15% Similarity=0.108 Sum_probs=153.9
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCceeEEEEcCCC------------CCcEEEEEEcCCCcceEEEEeCCCCeEEE
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFI------------PGAVEWVYKQGDVKAGLAISDRNSSFVHI 67 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~------------~~~v~~v~~s~~~~~~~l~s~~~d~~I~i 67 (513)
|+++++ |+++++-+..+.|++||... ..+..+-..+. -.....+++.+++.. ++++...++.|++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHALRE 650 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceEEE
Confidence 356664 66777777788999999854 43333221111 112466777776542 5566666788999
Q ss_pred EecCCCCCcceEEeecC-----------------CCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeec
Q 010302 68 YDARADSNEPLISKKVH-----------------MGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 129 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h-----------------~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 129 (513)
+|+. + ..+.++.+. -..-..++++| ++.++++.+.++.|++||..++... .+..
T Consensus 651 id~~--~-~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~----~~~G- 722 (1057)
T PLN02919 651 IDFV--N-ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR----VFSG- 722 (1057)
T ss_pred EecC--C-CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE----EEec-
Confidence 9985 3 334444210 11235799999 5667788888899999998664321 1110
Q ss_pred CCcccc-----ccccCCcceEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccc
Q 010302 130 SDTNLF-----EILKSKTTVSAIEVSPDGKQF-SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 203 (513)
Q Consensus 130 ~~~~~~-----~~~~~~~~v~~v~~spdg~~l-~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 203 (513)
.+.... .....-..+..|+++|+++.| ++-+.++.|++||+.++.......+... . +...+ .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~------~-~~~l~-----~ 790 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT------F-SDNLF-----K 790 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc------c-Ccccc-----c
Confidence 000000 000112346789999999855 4555689999999998764221111000 0 00000 0
Q ss_pred ccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceee
Q 010302 204 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRK 282 (513)
Q Consensus 204 ~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~ 282 (513)
++..-... .......+..++++++|+.+++.+.. .|++||..++.+..+.|.......- ..+. .+ .-.....
T Consensus 791 fG~~dG~g---~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d-G~~~-~a--~l~~P~G 863 (1057)
T PLN02919 791 FGDHDGVG---SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD-GKAL-KA--QLSEPAG 863 (1057)
T ss_pred ccCCCCch---hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC-Cccc-cc--ccCCceE
Confidence 11000000 00011245688999999976666544 5999999999887666532100000 0000 00 0001111
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 283 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 283 ~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
+.+ .+|+.++++...+++|.+|+.++..
T Consensus 864 Iav-----------d~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 864 LAL-----------GENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEE-----------eCCCCEEEEECCCCEEEEEECCCCc
Confidence 111 2566788999999999999876644
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.83 E-value=4.9e-06 Score=81.37 Aligned_cols=205 Identities=17% Similarity=0.030 Sum_probs=127.6
Q ss_pred EecCCCEEEEEeC----------CCcEEEEEccCCceeEEEEcCCCC-----CcEEEEEEcCCCcceEEEEeCCCCeEEE
Q 010302 3 VSVDGLLCCSISN----------DKSVKIYDVVNYDMMLMIRLPFIP-----GAVEWVYKQGDVKAGLAISDRNSSFVHI 67 (513)
Q Consensus 3 ~s~dg~~las~s~----------D~~v~iwd~~~~~~~~~~~l~~~~-----~~v~~v~~s~~~~~~~l~s~~~d~~I~i 67 (513)
+||||+.|..+.. +..|.+||+.+++.+..+.+...+ .....+.++++++.+++.--+-+..+.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 7999998877755 789999999999999888765332 2344778899998544333344889999
Q ss_pred EecCCCCCcceEEeecCCCC-------------------------------eEEE--------------EEcC-CCCEEE
Q 010302 68 YDARADSNEPLISKKVHMGP-------------------------------VKVM--------------RYNP-VFDTVI 101 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h~~~-------------------------------V~~l--------------~~sp-~~~~l~ 101 (513)
.|+. +.+.+..+.-..+. +... .|.+ +++++.
T Consensus 133 vD~~--~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLE--GKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECC--CCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9987 65555544311100 0000 1122 444443
Q ss_pred EEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc--c-----cCCcceEEEEEcCCCCEEEEEe----------CCCc
Q 010302 102 SADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI--L-----KSKTTVSAIEVSPDGKQFSITS----------PDRR 164 (513)
Q Consensus 102 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~v~~v~~spdg~~l~s~s----------~D~~ 164 (513)
...+ |+|.+.|+..... +.......+ . -..+.+.-++++|+++.+.... ..+.
T Consensus 211 vs~e-G~V~~id~~~~~~---------~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDA---------KFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EecC-CeEEEEecCCCcc---------eecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 3333 5555555422110 000111110 0 0223344499999999887643 1257
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc---cc
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL---LG 241 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~---~g 241 (513)
|.++|..+++.+..+.- ......++++++|+.++|.+. ..
T Consensus 281 V~ViD~~t~kvi~~i~v-------------------------------------G~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIEL-------------------------------------GHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred EEEEECCCCeEEEEEeC-------------------------------------CCceeeEEECCCCCeEEEEeCCCCCc
Confidence 99999999999877641 123457899999995554433 34
Q ss_pred eEEEEcccCcEEEEe
Q 010302 242 IKIVNLHTNKVSRIL 256 (513)
Q Consensus 242 i~v~d~~t~~~v~~~ 256 (513)
|.++|..+++.++.+
T Consensus 324 VsViD~~t~k~i~~i 338 (352)
T TIGR02658 324 LYIFDAETGKELSSV 338 (352)
T ss_pred EEEEECcCCeEEeee
Confidence 999999999999988
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.82 E-value=3.1e-07 Score=83.87 Aligned_cols=120 Identities=18% Similarity=0.097 Sum_probs=89.9
Q ss_pred EEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCC
Q 010302 42 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFP 120 (513)
Q Consensus 42 v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~ 120 (513)
...+.|++.+. -++++..++.+.+-+.....-+.++.++.|...++...|+. +.+++.+|+.|+.+..||++..
T Consensus 124 ~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p--- 198 (339)
T KOG0280|consen 124 ALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP--- 198 (339)
T ss_pred eeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC---
Confidence 45667777777 46777778888855543223344557889999999999986 5678999999999999999731
Q ss_pred CcceeeeecCCccccc-cccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeEE
Q 010302 121 ESEVSFRLKSDTNLFE-ILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRT-GKLR 176 (513)
Q Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp-dg~~l~s~s~D~~I~iwd~~t-g~~~ 176 (513)
.+.+.. .+.|...|.+|.-|| .+.++++|+.|..|++||.++ ++.+
T Consensus 199 ----------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 199 ----------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred ----------cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 122322 345888899998887 678999999999999999985 4543
No 286
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=2.6e-07 Score=94.41 Aligned_cols=158 Identities=11% Similarity=0.025 Sum_probs=96.8
Q ss_pred eEecCCCEEEEEeC-----CCcEEEEEccCC---ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEE--ecC
Q 010302 2 QVSVDGLLCCSISN-----DKSVKIYDVVNY---DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIY--DAR 71 (513)
Q Consensus 2 ~~s~dg~~las~s~-----D~~v~iwd~~~~---~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw--d~~ 71 (513)
+|||||+.||..+. |..+.+|++.++ +...... ..........|+|+++.++.+ ...++...+| ++.
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSPDG~~Laf~-s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSPDGTRLVFV-SNKDGRPRIYIMQID 313 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec--CCCCCcCCeEECCCCCEEEEE-ECCCCCceEEEEECc
Confidence 69999999987763 223445777653 2222221 122334567899999854433 3345544555 443
Q ss_pred CCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC---CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEE
Q 010302 72 ADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIE 148 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (513)
. .+.....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++. ..+......+....
T Consensus 314 ~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---------------~~Lt~~~~~~~~p~ 377 (428)
T PRK01029 314 P-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---------------YQLTTSPENKESPS 377 (428)
T ss_pred c-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---------------EEccCCCCCccceE
Confidence 1 123344455555667889999999988766543 3588888876432 22222233466789
Q ss_pred EcCCCCEEEEEeC---CCcEEEEEcCCCeEEEE
Q 010302 149 VSPDGKQFSITSP---DRRIRVFWFRTGKLRRV 178 (513)
Q Consensus 149 ~spdg~~l~s~s~---D~~I~iwd~~tg~~~~~ 178 (513)
|+|||+.|+..+. ...|.+||+.+++....
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 9999998875443 35688889888776443
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.80 E-value=2.4e-07 Score=84.59 Aligned_cols=118 Identities=11% Similarity=0.036 Sum_probs=91.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.|++-|..++++-.+|.+.+-+.....+......+.|.-.++...|+.... .++.+|+.|+.+..||++.. .+.+..
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p-~~~i~~ 204 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIP-KTFIWH 204 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCC-cceeee
Confidence 3578888889988889999865554444444445667777788777775433 38999999999999999832 344444
Q ss_pred -eecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCC
Q 010302 81 -KKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFP 120 (513)
Q Consensus 81 -~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~ 120 (513)
.+.|...|.+|.-+| .+.++++|+.|..|++||.+....|
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 558999999999887 6889999999999999999976655
No 288
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.4e-07 Score=92.21 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=125.8
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
.|-..||-|...|.|-+|++..++....+.-..|.+.+..+.+..... .+-|++.|+.+..|+.. ..+.++.+.+.
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~--~~~~~~~~~~~ 143 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEK--EKVIIRIWKEQ 143 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC--ceEecCCceeEEEEecc--cceeeeeeccC
Confidence 344567778889999999999999988888889999999999887766 88999999999999998 88889999999
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC-----CCEEEEE
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-----GKQFSIT 159 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-----g~~l~s~ 159 (513)
...+.+++.+||+..+++++ +.|++||+++ .+.+..+.+|.++|.+++|--+ |.++.++
T Consensus 144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~--------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS--RQIKVLDIET--------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred CCccceEEEcCCCCEEEecc--ceEEEEEccC--------------ceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 99999999999999999887 6799999988 4568899999999999999877 6666654
Q ss_pred e-CCCcEEEEEcCC
Q 010302 160 S-PDRRIRVFWFRT 172 (513)
Q Consensus 160 s-~D~~I~iwd~~t 172 (513)
. .+.-+.+|-.+.
T Consensus 208 a~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 208 AAAERGITVWVVEK 221 (541)
T ss_pred cccccceeEEEEEc
Confidence 4 466677776543
No 289
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=9.3e-07 Score=87.53 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=119.6
Q ss_pred eCCCcEEEEEccCCceeEEEEc-CCCCCcEEEEEEcCCCcceEEEE-eCCCC---------eEEEEecCCCCCcceEEee
Q 010302 14 SNDKSVKIYDVVNYDMMLMIRL-PFIPGAVEWVYKQGDVKAGLAIS-DRNSS---------FVHIYDARADSNEPLISKK 82 (513)
Q Consensus 14 s~D~~v~iwd~~~~~~~~~~~l-~~~~~~v~~v~~s~~~~~~~l~s-~~~d~---------~I~iwd~~~~~~~~i~~~~ 82 (513)
|.-..|+||...-......+.. .+....-..+.|.+-+..+++++ ..-|+ ++++.+++ ...+.-.+
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~s~~V~L- 267 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GESVSVPL- 267 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--CceEEEec-
Confidence 3456788887752211111110 12223344566777777665443 33343 46777774 22222222
Q ss_pred cCCCCeEEEEEcCCCCEEEEE--cCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 83 VHMGPVKVMRYNPVFDTVISA--DDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
...++|.++.|+|+++-|+.+ -.--.+.|+|++. ..++.+ ..++-+++-|+|.|++++.++
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---------------~~v~df--~egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---------------KPVFDF--PEGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---------------CEeEeC--CCCCccceEECCCCCEEEEee
Confidence 457899999999999877553 3556788998854 333333 345668899999999998877
Q ss_pred ---CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 161 ---PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 161 ---~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
.-|.+-|||+.+.+++..++. ...+...|+|+|++++++
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a--------------------------------------~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKA--------------------------------------ANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred cCCCCCceEEEeccchhhcccccc--------------------------------------CCceEEEEcCCCcEEEEE
Confidence 368999999999887765542 112356799999999988
Q ss_pred ccc-------ceEEEEcccCcEEEEe
Q 010302 238 TLL-------GIKIVNLHTNKVSRIL 256 (513)
Q Consensus 238 s~~-------gi~v~d~~t~~~v~~~ 256 (513)
+.. |++||+. +|+.+...
T Consensus 373 TTaPRlrvdNg~Kiwhy-tG~~l~~~ 397 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHY-TGSLLHEK 397 (566)
T ss_pred eccccEEecCCeEEEEe-cCceeehh
Confidence 643 7999999 67766553
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.71 E-value=4.5e-06 Score=94.10 Aligned_cols=224 Identities=11% Similarity=0.069 Sum_probs=132.7
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCC---------------CCcEEEEEEcCCCcceEEEEeCCCCe
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFI---------------PGAVEWVYKQGDVKAGLAISDRNSSF 64 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~---------------~~~v~~v~~s~~~~~~~l~s~~~d~~ 64 (513)
|+++++++.|..+. ....|+++|..++.. ..+.-.+. -.....+++++++.. ++++...++.
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~ 706 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQ 706 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCe
Confidence 46778887665554 457899999877543 22211100 012356788874332 7778888899
Q ss_pred EEEEecCCCCCcceEEeec---------------CCCCeEEEEEcCCCCE-EEEEcCCCcEEEecCCCCCCCCcceee-e
Q 010302 65 VHIYDARADSNEPLISKKV---------------HMGPVKVMRYNPVFDT-VISADDKGIIEYWSPHTLQFPESEVSF-R 127 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~---------------h~~~V~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~-~ 127 (513)
|++||.. ++. +..+.+ .-.....++++|+++. +++-+.++.|++||+.++... .+.- +
T Consensus 707 I~v~d~~--~g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~--~~~gg~ 781 (1057)
T PLN02919 707 IWEYNIS--DGV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR--LLAGGD 781 (1057)
T ss_pred EEEEECC--CCe-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE--EEEecc
Confidence 9999985 332 222211 1123467999999984 456667789999998764310 0000 0
Q ss_pred ecCCccccccc--------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccc
Q 010302 128 LKSDTNLFEIL--------KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 199 (513)
Q Consensus 128 ~~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l 199 (513)
......+..+. ..-.....++++++|+.+++-+.+++|++||..++......... ..-+
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G-----------~~G~-- 848 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG-----------KAGF-- 848 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC-----------CcCC--
Confidence 00000001110 01123568999999998888889999999999988765433110 0000
Q ss_pred ccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEE
Q 010302 200 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSR 254 (513)
Q Consensus 200 ~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~ 254 (513)
..|.. .. .....+..++++++|+.++..+.. .|++||+.+++.++
T Consensus 849 ---~dG~~--~~-----a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~ 894 (1057)
T PLN02919 849 ---KDGKA--LK-----AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAE 894 (1057)
T ss_pred ---CCCcc--cc-----cccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccce
Confidence 00000 00 111245688999999977776554 49999999987643
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=1.6e-07 Score=86.19 Aligned_cols=225 Identities=14% Similarity=0.223 Sum_probs=136.3
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCcee-EE--EEcCCC------------CCcEEEEEEcCCCcceEEEEeCCCCeEE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMM-LM--IRLPFI------------PGAVEWVYKQGDVKAGLAISDRNSSFVH 66 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~-~~--~~l~~~------------~~~v~~v~~s~~~~~~~l~s~~~d~~I~ 66 (513)
.|...|.|||+|...|.|.+|.-+..... .. -.++.| ...+..+.|..+.....+.-..+|++|+
T Consensus 33 efd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiK 112 (460)
T COG5170 33 EFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIK 112 (460)
T ss_pred EeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceee
Confidence 46678999999999999999987643210 00 011111 1346677777665554445556889999
Q ss_pred EEecCCCCCc-----------------c------------------e-----EEe-ecCCCCeEEEEEcCCCCEEEEEcC
Q 010302 67 IYDARADSNE-----------------P------------------L-----ISK-KVHMGPVKVMRYNPVFDTVISADD 105 (513)
Q Consensus 67 iwd~~~~~~~-----------------~------------------i-----~~~-~~h~~~V~~l~~sp~~~~l~s~s~ 105 (513)
+|.+...+-+ + + +.. ..|...|.++.|+.+...++|+.
T Consensus 113 lWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaD- 191 (460)
T COG5170 113 LWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD- 191 (460)
T ss_pred eeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecc-
Confidence 9987532100 0 0 011 25777789999999998888876
Q ss_pred CCcEEEecCCCCCCCCcceeeeecCCccccccccC-----CcceEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 106 KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS-----KTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~spdg~-~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
|-.|.+|++.-.. . .|. +..++.| ...|++..|+|... .+.-.+..|.|++-|++...+-
T Consensus 192 dLrINLWnl~i~D---~--sFn------IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc--- 257 (460)
T COG5170 192 DLRINLWNLEIID---G--SFN------IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC--- 257 (460)
T ss_pred ceeeeeccccccC---C--ceE------EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc---
Confidence 6679999774311 1 111 1111122 23478889999654 5556667999999998853321
Q ss_pred cccHHHHHHHhcCCCCccc--cccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcc-cCcEEEEe
Q 010302 180 DESLEVAQDLQRSDAPLYR--LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLH-TNKVSRIL 256 (513)
Q Consensus 180 ~~~~~~i~~~~~~~~~~~~--l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~-t~~~v~~~ 256 (513)
..+..++. ++..+. ..-.........+.|+++|+||++-.+..+++||.. .+.+++++
T Consensus 258 -----------dn~~klfe~~~D~v~~--------~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 258 -----------DNSKKLFELTIDGVDV--------DFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred -----------cCchhhhhhccCcccc--------hhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceee
Confidence 11111110 111100 000011134557889999999999999999999986 46678887
Q ss_pred CCCC
Q 010302 257 GKVE 260 (513)
Q Consensus 257 g~~~ 260 (513)
..++
T Consensus 319 ~~h~ 322 (460)
T COG5170 319 PMHC 322 (460)
T ss_pred chHH
Confidence 6554
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.6e-07 Score=90.89 Aligned_cols=271 Identities=16% Similarity=0.196 Sum_probs=161.2
Q ss_pred eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-----CCcceEEeecCCCCeEEEEEcCCCCEEEEEc
Q 010302 30 MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNPVFDTVISAD 104 (513)
Q Consensus 30 ~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-----~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s 104 (513)
+..-.+.+|...+..++...+.+ -+++++.|+++++|.++.. +..+..+.+.|+.+|.++.|-.+-++++++
T Consensus 726 irL~nf~GH~~~iRai~AidNEN--SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNEN--SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhccccc--ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 33344456666666666555544 6789999999999998732 233566777999999999999998888766
Q ss_pred CCCcEEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEEEEcC--CCCEEEEE-eCCCcEEEEEcCCCeEEEEe
Q 010302 105 DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSP--DGKQFSIT-SPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp--dg~~l~s~-s~D~~I~iwd~~tg~~~~~~ 179 (513)
|+-|.+||+--+ ..+..... ..+.+..+..-| +...++.+ +...+++++|.++++....+
T Consensus 803 -D~giHlWDPFig--------------r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~ 867 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIG--------------RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL 867 (1034)
T ss_pred -cCcceeeccccc--------------chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE
Confidence 688999997442 22222111 112222222223 44455555 57899999999998876655
Q ss_pred cccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEeCC
Q 010302 180 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGK 258 (513)
Q Consensus 180 ~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g~ 258 (513)
+-... ...+.....++.-+.|+.++.+-.. .|-+.|..+|+++.....
T Consensus 868 kVcna-------------------------------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 868 KVCNA-------------------------------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred EeccC-------------------------------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 32100 0011233467788899999988544 489999999998766543
Q ss_pred CCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE-EecCCCCCCcccCCCcCccCCCC
Q 010302 259 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL-FSRREPEEPEDATKGRDIFNEKP 337 (513)
Q Consensus 259 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i-~~~~~~~~~~~~~~~~~~~~~~p 337 (513)
+...+.|- ..++|..|..|+.+- .+-+ |.+-. .+-.+..+|
T Consensus 917 -------mecdllql---------------------aapsdq~L~~saldH-slaVnWhald---------gimh~q~kp 958 (1034)
T KOG4190|consen 917 -------MECDLLQL---------------------AAPSDQALAQSALDH-SLAVNWHALD---------GIMHLQDKP 958 (1034)
T ss_pred -------ccchhhhh---------------------cCchhHHHHhhcccc-eeEeeehhcC---------CeeeeccCC
Confidence 22222221 014566666555544 5554 87654 233445566
Q ss_pred CccccccccccCCCccCCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCc
Q 010302 338 PPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNL 397 (513)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~ 397 (513)
+.|..-.... -.+..|.. ..|++ +.+|.+.+-.+++.=+.-.+..-|.|+
T Consensus 959 ppepahflqs-------vgpSLV~a--~~Gn~-lgVYad~a~~ha~stitKiR~d~f~G~ 1008 (1034)
T KOG4190|consen 959 PPEPAHFLQS-------VGPSLVTA--QNGNI-LGVYADSAELHAESTITKIRPDEFPGT 1008 (1034)
T ss_pred CCcchhhhhc-------cCceeEEe--ccCcE-EEEEecchhhhhhhhhccccccccCCc
Confidence 6553322221 11222322 33554 578999888777655544444444443
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=5.7e-06 Score=74.87 Aligned_cols=157 Identities=13% Similarity=-0.049 Sum_probs=108.6
Q ss_pred EEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-EeecCCCCe
Q 010302 10 CCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI-SKKVHMGPV 88 (513)
Q Consensus 10 las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~-~~~~h~~~V 88 (513)
+..++.|.++++.++.-+......... .-....++.++++. ++++-+....|..|.+...+...+. .....+..=
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~--~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQ--NLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeecc--ccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 445678888888888654333332211 12377888899988 8888888889999998643333333 222334445
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC--EEEEEeCCCcEE
Q 010302 89 KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK--QFSITSPDRRIR 166 (513)
Q Consensus 89 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~s~s~D~~I~ 166 (513)
.+..|+.....+|++..||++.|||++....|.. +...+-..|++.+..+.|+|-|. +|...-.=+.+.
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA---------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEecccccchh---------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 6788999999999999999999999988654322 12223334899999999998664 333333457899
Q ss_pred EEEcCCCeEEEEe
Q 010302 167 VFWFRTGKLRRVY 179 (513)
Q Consensus 167 iwd~~tg~~~~~~ 179 (513)
+.|+++++-.+.+
T Consensus 278 v~D~R~~~~~q~I 290 (344)
T KOG4532|consen 278 VVDTRNYVNHQVI 290 (344)
T ss_pred EEEcccCceeeEE
Confidence 9999998765544
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.2e-06 Score=86.61 Aligned_cols=233 Identities=14% Similarity=0.173 Sum_probs=128.9
Q ss_pred CeEecCCCEEEEEeC-----------CCcEEEEEccCCceeEEEEcCCCCCc-EEEEEEcCCCcceEEEEeCCCCeEEEE
Q 010302 1 MQVSVDGLLCCSISN-----------DKSVKIYDVVNYDMMLMIRLPFIPGA-VEWVYKQGDVKAGLAISDRNSSFVHIY 68 (513)
Q Consensus 1 v~~s~dg~~las~s~-----------D~~v~iwd~~~~~~~~~~~l~~~~~~-v~~v~~s~~~~~~~l~s~~~d~~I~iw 68 (513)
+.|||+.+||+|=|. ...++|||+.+|...+.+.....+.. -....||.+.+ +++.-.. ..|.||
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK--y~Arm~~-~sisIy 331 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK--YFARMTG-NSISIY 331 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc--eeEEecc-ceEEEE
Confidence 579999999999863 15799999999998877664322222 23467888887 4443333 579999
Q ss_pred ecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC-----CcEEEecCCCCCCCCc---------ceee--------
Q 010302 69 DARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-----GIIEYWSPHTLQFPES---------EVSF-------- 126 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~---------~~~~-------- 126 (513)
+.. +..++-.-.-.-..|....|+|.+++||--... ..+.+..+.+++.... .+.|
T Consensus 332 Etp--sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 332 ETP--SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred ecC--ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 875 333222222334567788899988777633211 1122222211111100 0001
Q ss_pred ---------------------eecCCccccccccCCcceEEEEEcCCCCEEEEEeC---CCcEEEEEcCC----CeEEEE
Q 010302 127 ---------------------RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP---DRRIRVFWFRT----GKLRRV 178 (513)
Q Consensus 127 ---------------------~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~---D~~I~iwd~~t----g~~~~~ 178 (513)
.+...........-+..|...+|-|.|..+++-+. ..++++|.+.+ -++++.
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 11111111111123456788999999998887663 46789998873 233444
Q ss_pred ecccHHHHHHHhcCCCCccccccccccceeeee---eec------cccCCCCCCceEEcCCCCEEEEcccc
Q 010302 179 YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE---KEI------EKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e---~e~------~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
++. .....+.+++..-+.+-..-.+++..++ ..+ ........+.+-|||+|+|+++++..
T Consensus 490 ~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 490 LDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 443 3345566777654443333222222221 111 11222344578899999999988653
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=2.6e-07 Score=83.00 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=93.7
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-----CCeEEEEecCCCCCcceEE
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-----SSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-----d~~I~iwd~~~~~~~~i~~ 80 (513)
-++.++++..|+.+.+++.+. ......+++.........+....++ ++.++.- -+..+.|+++.........
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeecccccccccccc
Confidence 467789999999999999875 2111111111111111111111222 2322211 2235677765222111111
Q ss_pred eecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEE
Q 010302 81 KKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSI 158 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s 158 (513)
.....|++++-+|. .+.++.|+.||.+.+||.+... .+...+..|+..++.+-|+| ++..|.+
T Consensus 177 --~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 177 --KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------------MPVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred --cccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------------chHHHHHHhhhhhhheeccCCCchheeE
Confidence 12234899999994 5566888899999999998743 34556778999999999999 6789999
Q ss_pred EeCCCcEEEEEcCC
Q 010302 159 TSPDRRIRVFWFRT 172 (513)
Q Consensus 159 ~s~D~~I~iwd~~t 172 (513)
++.||.+.-||..+
T Consensus 242 ~sedGslw~wdas~ 255 (319)
T KOG4714|consen 242 CSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCcEEEEcCCC
Confidence 99999999999765
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1e-07 Score=91.64 Aligned_cols=187 Identities=23% Similarity=0.300 Sum_probs=143.2
Q ss_pred CCCeEEEeeec-CceEEEEecCCCCCCcccCCCcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCe----EEEEE
Q 010302 298 SDPTLLCCAFK-RHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMG----DIHMK 372 (513)
Q Consensus 298 ~d~~l~~s~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G----~i~i~ 372 (513)
-|+.++||..+ |+...+|.-..-. ..|- -.-...+..+.+.|..| .|.|+
T Consensus 63 ~dg~L~~Sv~d~Dhs~KvfDvEn~D----------minm---------------iKL~~lPg~a~wv~skGd~~s~IAVs 117 (558)
T KOG0882|consen 63 YDGWLFRSVEDPDHSVKVFDVENFD----------MINM---------------IKLVDLPGFAEWVTSKGDKISLIAVS 117 (558)
T ss_pred ccceeEeeccCcccceeEEEeeccc----------hhhh---------------cccccCCCceEEecCCCCeeeeEEee
Confidence 68889999888 8888888433211 1000 01124445566778888 79999
Q ss_pred eCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCC-CCCCCc-ccCCCC----Cc-cccccCCCCCCceEEE
Q 010302 373 LYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLG-DGTGGQ-SIWGRE----FE-DEFHKSLRHDRPFTVS 445 (513)
Q Consensus 373 l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~-~~~~~~-~~~~~~----~~-~e~~~~~~~~~~g~v~ 445 (513)
++.+-.|.-++-|...|+.+++++..|.||...+++|.||..- ...+|. -.|..+ ++ .+....++|.. .+..
T Consensus 118 ~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-dLy~ 196 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-DLYG 196 (558)
T ss_pred cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc-hhhc
Confidence 9999999999999999999999999999999999999998632 122221 122222 33 33556788876 5777
Q ss_pred EeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 010302 446 MANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 510 (513)
Q Consensus 446 ~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v 510 (513)
+........+-+|++.-...+-+..+..|||++..|-++++.|.+..++....|..++.|.++++
T Consensus 197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 77665555567899999889999999999999999999999999999999999999999998865
No 297
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.7e-06 Score=85.74 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=100.9
Q ss_pred cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCC
Q 010302 18 SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF 97 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~ 97 (513)
++++.++..... ...+. ..++|.++.|++.+....++-|-.-..+.|+|+ .+.++..+. .++=.++-|+|.|
T Consensus 252 ~Lyll~t~g~s~--~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl---r~~~v~df~--egpRN~~~fnp~g 323 (566)
T KOG2315|consen 252 TLYLLATQGESV--SVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL---RGKPVFDFP--EGPRNTAFFNPHG 323 (566)
T ss_pred eEEEEEecCceE--EEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC---CCCEeEeCC--CCCccceEECCCC
Confidence 677777763222 22222 358899999999999888888988899999999 577887763 5566789999999
Q ss_pred CEEEEEcCC---CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC------CCcEEEE
Q 010302 98 DTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP------DRRIRVF 168 (513)
Q Consensus 98 ~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~------D~~I~iw 168 (513)
++++.++.+ |.+.+||+.+.++ +..+... .-+-+.|+|||++|+|+.. |+.++||
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~--------------i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKL--------------IAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhh--------------ccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 999888854 7899999977433 3333332 2345789999999998873 7889999
Q ss_pred EcCCCeEEE
Q 010302 169 WFRTGKLRR 177 (513)
Q Consensus 169 d~~tg~~~~ 177 (513)
+. +|+.+.
T Consensus 388 hy-tG~~l~ 395 (566)
T KOG2315|consen 388 HY-TGSLLH 395 (566)
T ss_pred Ee-cCceee
Confidence 86 566544
No 298
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=4.9e-07 Score=89.56 Aligned_cols=153 Identities=11% Similarity=0.129 Sum_probs=111.9
Q ss_pred EEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee------cC
Q 010302 11 CSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK------VH 84 (513)
Q Consensus 11 as~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~------~h 84 (513)
..++....|+-++++.|..+..+... .+.++.+..++... ++++|..+|.+..||.+ ....+.++. .|
T Consensus 149 y~~gsg~evYRlNLEqGrfL~P~~~~--~~~lN~v~in~~hg--Lla~Gt~~g~VEfwDpR--~ksrv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQGRFLNPFETD--SGELNVVSINEEHG--LLACGTEDGVVEFWDPR--DKSRVGTLDAASSVNSH 222 (703)
T ss_pred EEeecCcceEEEEccccccccccccc--cccceeeeecCccc--eEEecccCceEEEecch--hhhhheeeecccccCCC
Confidence 33444557888899988877776643 36677777777666 99999999999999998 545555544 22
Q ss_pred CC-----CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcCCC--CEE
Q 010302 85 MG-----PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPDG--KQF 156 (513)
Q Consensus 85 ~~-----~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg--~~l 156 (513)
.. .|+++.|+.+|-.++.|..+|.+.|+|+++.+ ++..- ....-+|..+.|.+.+ ..+
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--------------pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--------------PLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--------------ceeecccCCccceeeecccccCCCceE
Confidence 22 39999999999999999999999999998832 23222 1244568899998753 344
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHH
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLE 184 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~ 184 (513)
++ .....++|||-.+|+....++....
T Consensus 289 ~S-~Dk~~~kiWd~~~Gk~~asiEpt~~ 315 (703)
T KOG2321|consen 289 VS-MDKRILKIWDECTGKPMASIEPTSD 315 (703)
T ss_pred Ee-cchHHhhhcccccCCceeeccccCC
Confidence 43 4567889999999999887765443
No 299
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.60 E-value=1.3e-06 Score=81.51 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=105.5
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
|+..-+++++++.|..+.---.+.+..+....+...... ..+ +- .+...|...+.|.+-.+......++.++.
T Consensus 122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~---~~~--d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~ 194 (404)
T KOG1409|consen 122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASA---LQF--DA--LYAFVGDHSGQITMLKLEQNGCQLITTFN 194 (404)
T ss_pred ecCCceeEEEeccccceEEEeeccCCcccceEeeccCCC---Cce--ee--EEEEecccccceEEEEEeecCCceEEEEc
Confidence 444556777777776664333333333222221111000 000 00 04445556667766665544678889999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC
Q 010302 83 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D 162 (513)
+|...+.+++|.|....|.||..|..+.+||+.-.+ ....++.+|...|..++.-+--+.+.+++.|
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-------------g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed 261 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-------------GTAYELQGHNDKVQALSYAQHTRQLISCGED 261 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-------------ceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence 999999999999999999999999999999985422 3356777899999999998888999999999
Q ss_pred CcEEEEEcCCCe
Q 010302 163 RRIRVFWFRTGK 174 (513)
Q Consensus 163 ~~I~iwd~~tg~ 174 (513)
|.|-+|++...+
T Consensus 262 g~i~~w~mn~~r 273 (404)
T KOG1409|consen 262 GGIVVWNMNVKR 273 (404)
T ss_pred CeEEEEecccee
Confidence 999999987644
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.59 E-value=3.5e-05 Score=75.77 Aligned_cols=167 Identities=15% Similarity=0.098 Sum_probs=100.6
Q ss_pred CeEecCCCEEEEEeCCC---------------cEEEEEccCCceeEEEEcCCCCCcEE-EEEEcCCCcceEEEEeCCCCe
Q 010302 1 MQVSVDGLLCCSISNDK---------------SVKIYDVVNYDMMLMIRLPFIPGAVE-WVYKQGDVKAGLAISDRNSSF 64 (513)
Q Consensus 1 v~~s~dg~~las~s~D~---------------~v~iwd~~~~~~~~~~~l~~~~~~v~-~v~~s~~~~~~~l~s~~~d~~ 64 (513)
+.|||+++||.+-+... .+.+||+.++..+..+.....+...+ .+.|+.+.....-+.+ ..
T Consensus 77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~---~s 153 (561)
T COG5354 77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG---SS 153 (561)
T ss_pred cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc---Ce
Confidence 46899999999987544 49999999998887766444443344 5677776653222233 35
Q ss_pred EEEEecCCCCCc--ceEEeecCCCCeEEEEEcCCC--CEEEE-----EcCCCcEEEecCCCCCCCCc---------ceee
Q 010302 65 VHIYDARADSNE--PLISKKVHMGPVKVMRYNPVF--DTVIS-----ADDKGIIEYWSPHTLQFPES---------EVSF 126 (513)
Q Consensus 65 I~iwd~~~~~~~--~i~~~~~h~~~V~~l~~sp~~--~~l~s-----~s~dg~i~iwd~~~~~~~~~---------~~~~ 126 (513)
++|+++. ++.. +.+.++ ...|....|+|.+ ..|+. ....+++++|.+........ .+.|
T Consensus 154 l~i~e~t-~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 154 LYIHEIT-DNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred EEEEecC-CccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 8888862 2221 222221 3557778888853 33332 44567788886643222110 1111
Q ss_pred e-------------ecCC----------------ccccccccCCcceEEEEEcCCCCEEEEEe--CCCcEEEEEcCCC
Q 010302 127 R-------------LKSD----------------TNLFEILKSKTTVSAIEVSPDGKQFSITS--PDRRIRVFWFRTG 173 (513)
Q Consensus 127 ~-------------~~~~----------------~~~~~~~~~~~~v~~v~~spdg~~l~s~s--~D~~I~iwd~~tg 173 (513)
. ++++ ..+......+++|...+|+|+++.+++.+ .+..+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 1 1111 11111123468899999999999888766 5888999998865
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=3.5e-05 Score=73.00 Aligned_cols=210 Identities=17% Similarity=0.211 Sum_probs=128.6
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccC-CceeEEEEcCCCCC----------cEEEEEEcCCCcceEEEEe-CCCCeEEE
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVN-YDMMLMIRLPFIPG----------AVEWVYKQGDVKAGLAISD-RNSSFVHI 67 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~-~~~~~~~~l~~~~~----------~v~~v~~s~~~~~~~l~s~-~~d~~I~i 67 (513)
|+++++|++++++. .-+.|.++-+.. |.+......-.|.+ ++.+..+.|+++ ++++. -.--.|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEEE
Confidence 57899999999998 468999999965 44433333323333 388889999988 44433 33446899
Q ss_pred EecCCCCCcceEE--ee-cCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCccccccc---cC
Q 010302 68 YDARADSNEPLIS--KK-VHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL---KS 140 (513)
Q Consensus 68 wd~~~~~~~~i~~--~~-~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 140 (513)
|++. .++.... .. .....-.-|.|+|++++..... -+++|.+|......- +++.-+.+..+. ..
T Consensus 172 y~~~--dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g-------~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 172 YDLD--DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG-------KFEELQTIDTLPEDFTG 242 (346)
T ss_pred EEcc--cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc-------eEEEeeeeccCccccCC
Confidence 9987 4332221 11 2234457899999999885555 588999997655210 000011122222 13
Q ss_pred CcceEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc
Q 010302 141 KTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRT--GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 217 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~-D~~I~iwd~~t--g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~ 217 (513)
..+..+|..+|||++|.++.. ...|.+|.+.. |++ .... ....
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L-~~~~---------------------------------~~~t 288 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL-ELVG---------------------------------ITPT 288 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE-EEEE---------------------------------Eecc
Confidence 456788999999999987653 34677776543 332 1110 0112
Q ss_pred CCCCCCceEEcCCCCEEEEcccc--ceEEE--EcccCcEEEE
Q 010302 218 ETAPPSNAIFDESSNFLIYATLL--GIKIV--NLHTNKVSRI 255 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~--gi~v~--d~~t~~~v~~ 255 (513)
....+....++++|++|+.+..+ .|.++ |-.||++-.+
T Consensus 289 eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 289 EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 22335677899999999998654 36665 4556765443
No 302
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.57 E-value=1.7e-05 Score=77.22 Aligned_cols=194 Identities=17% Similarity=0.196 Sum_probs=130.8
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC--CC--C---CcE---EEEE-EcC-CCcceEEEEeCCCCeEEEEec
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP--FI--P---GAV---EWVY-KQG-DVKAGLAISDRNSSFVHIYDA 70 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~--~~--~---~~v---~~v~-~s~-~~~~~~l~s~~~d~~I~iwd~ 70 (513)
.+.||+.++- +..|.|.+||-++..+ ..+.+. -. + ..+ ..+. |+. ++. +++..+. |+..|.+.
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd--~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD--YIALVSR-GKAFIMRP 348 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCc--EEEEEec-CcEEEECC
Confidence 3568998874 5678999999887443 333322 00 0 001 1111 222 334 3333332 44666554
Q ss_pred CCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC-cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEE
Q 010302 71 RADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV 149 (513)
Q Consensus 71 ~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (513)
. .+-.++ + +|...|.-..+.-+++-++.|..|| .+-|+|.++++ ...+...-+.|.++..
T Consensus 349 ~--~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---------------~kr~e~~lg~I~av~v 409 (668)
T COG4946 349 W--DGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---------------VKRIEKDLGNIEAVKV 409 (668)
T ss_pred C--CCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---------------EEEeeCCccceEEEEE
Confidence 2 222222 2 6778888888888888899999998 79999987633 4455556678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 150 SPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 150 spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
+|||++++.+.....|.+.|+.+|.... ++ +......+...|++
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~~-id-----------------------------------kS~~~lItdf~~~~ 453 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVRL-ID-----------------------------------KSEYGLITDFDWHP 453 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCeeE-ec-----------------------------------ccccceeEEEEEcC
Confidence 9999999998888889999999987632 21 12223445678999
Q ss_pred CCCEEEEccccc-----eEEEEcccCcEEEEe
Q 010302 230 SSNFLIYATLLG-----IKIVNLHTNKVSRIL 256 (513)
Q Consensus 230 ~g~~li~~s~~g-----i~v~d~~t~~~v~~~ 256 (513)
++++++|+-..| |+++|+.++++..+.
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 999999996543 999999999988775
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.53 E-value=1e-05 Score=73.21 Aligned_cols=204 Identities=10% Similarity=-0.016 Sum_probs=125.4
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
-.+||.|+.-|...+|...+.+... .....+...+.-+.--.+.+. -+..++.|.++++.++..+..+.....+. -
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~-~~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~h~~~--~ 159 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHL-YQCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAVHNQN--L 159 (344)
T ss_pred ccEEEeccccceeeeecccCcccce-eeecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCcccceeeccc--c
Confidence 3578999999999999998765422 222333333322222222221 34455678888888886334333322211 2
Q ss_pred CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc-ccccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 010302 87 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF-EILKSKTTVSAIEVSPDGKQFSITSPDRRI 165 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~s~s~D~~I 165 (513)
.+.+++++++++++++.+....|-.|.+.... ...+. ........-.+..||.....+|+++.||++
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s------------ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES------------EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC 227 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCcc------------ceeeeeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence 37899999999999999988888888765421 11111 122233345678999999999999999999
Q ss_pred EEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC--EEEEccc-cce
Q 010302 166 RVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN--FLIYATL-LGI 242 (513)
Q Consensus 166 ~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~--~li~~s~-~gi 242 (513)
.|||++.......... . -..+.++....+-|++.|- +|.+.-. .-+
T Consensus 228 ~I~DVR~~~tpm~~~s------s-------------------------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~ 276 (344)
T KOG4532|consen 228 AIYDVRNMATPMAEIS------S-------------------------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV 276 (344)
T ss_pred EEEEecccccchhhhc------c-------------------------cCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence 9999987443221110 0 0012334556677877554 3444433 348
Q ss_pred EEEEcccCcEEEEeC
Q 010302 243 KIVNLHTNKVSRILG 257 (513)
Q Consensus 243 ~v~d~~t~~~v~~~g 257 (513)
++.|+.+++-++.+-
T Consensus 277 hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 277 HVVDTRNYVNHQVIV 291 (344)
T ss_pred EEEEcccCceeeEEe
Confidence 999999987776654
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.51 E-value=2.5e-07 Score=59.86 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=36.1
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEec
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWS 113 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd 113 (513)
++++++.+|...|.+++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57788999999999999999999999999999999996
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=4.5e-06 Score=84.78 Aligned_cols=154 Identities=10% Similarity=-0.025 Sum_probs=110.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce-------------eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM-------------MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHI 67 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~-------------~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~i 67 (513)
++|+.+..++|.|+.||.+++..+.+... ..-..+.+|...+.-+.|....+ .+.++..+|.|.+
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSDTSGLIIV 97 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccCCCceEEE
Confidence 46888899999999999999997764211 11123568999999999987766 7889999999999
Q ss_pred EecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 68 YDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
|-+-.++.-....-....+.|.+++|+.+|..++...+||.|-+=.+.-..+. ++. +++ .....+
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw----------gKe---Lkg--~~l~hv 162 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW----------GKE---LKG--QLLAHV 162 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec----------chh---cch--heccce
Confidence 99873322111112256678999999999999999999998866555332210 111 111 123478
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
.||+|.+.++.+-..|.+.+||..
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEeccc
Confidence 999999988888889999999864
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.46 E-value=3.2e-07 Score=59.35 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=35.3
Q ss_pred ccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010302 132 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 169 (513)
Q Consensus 132 ~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd 169 (513)
+++..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678889999999999999999999999999999997
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=3e-05 Score=79.77 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=163.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCC----------cceEEEEeCCCCeEEEEec
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDV----------KAGLAISDRNSSFVHIYDA 70 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~----------~~~~l~s~~~d~~I~iwd~ 70 (513)
+.|+|.| +||-|+. ..|.+-|..+.+.+..+. -|+..+..+.|.|.. ..++++++...|.|.+||.
T Consensus 21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred cccCccc-eEEEecC-ceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 3577776 6666664 478889998888777765 567889999997632 3457889999999999999
Q ss_pred CCCCCcceEEeecCCCCeEEEEEcC---CC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 71 RADSNEPLISKKVHMGPVKVMRYNP---VF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 71 ~~~~~~~i~~~~~h~~~V~~l~~sp---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
. ....+..+..|..++..++|-| +. ..|+.-....++-+|+..+++ ..-..........|
T Consensus 97 ~--~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--------------k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 97 V--LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--------------KFWKYDYSHEILSC 160 (1062)
T ss_pred h--hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--------------eeeccccCCcceee
Confidence 7 6677778889999999999976 33 466677777899999887744 33333333445677
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcC-------CCeEEEEecccHHHHHH--HhcCCCCccccccccccceeeeeeeccc
Q 010302 147 IEVSP-DGKQFSITSPDRRIRVFWFR-------TGKLRRVYDESLEVAQD--LQRSDAPLYRLEAIDFGRRMAVEKEIEK 216 (513)
Q Consensus 147 v~~sp-dg~~l~s~s~D~~I~iwd~~-------tg~~~~~~~~~~~~i~~--~~~~~~~~~~l~~~~~~~r~~~e~e~~~ 216 (513)
+.+.| |.+.+..-+..|.+.+.+.- .|+.++.-.+|.+.... ....++..- . + .
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~t---s---------~----~ 224 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTT---S---------T----P 224 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccccc---C---------C----C
Confidence 88888 66777766777877777653 25555555443332100 000000000 0 0 0
Q ss_pred cCCC---CCCceEEcCCCCEEEEcc-ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccccccc
Q 010302 217 TETA---PPSNAIFDESSNFLIYAT-LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 292 (513)
Q Consensus 217 ~~~~---~~~~i~fd~~g~~li~~s-~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
.... --...+|+|.-+-++... ..++.|+|++=..++.++.-..+...|+.+--
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP---------------------- 282 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP---------------------- 282 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc----------------------
Confidence 0000 001246777766555544 44799999998888887754443334433320
Q ss_pred CCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 293 SKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 293 ~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+.... +-+.-.+|++-||-|++
T Consensus 283 ---~~~rd~-LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 283 ---DPRRDA-LFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ---CCCcce-EEEEecCCeEEEEEeec
Confidence 022333 44577888999999886
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=7e-07 Score=83.34 Aligned_cols=152 Identities=12% Similarity=0.095 Sum_probs=111.0
Q ss_pred EEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC---CCCcceEEeecCCCC
Q 010302 11 CSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA---DSNEPLISKKVHMGP 87 (513)
Q Consensus 11 as~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~---~~~~~i~~~~~h~~~ 87 (513)
++.+.+-.|-+-|++++-.... . ..+.|...+|....+ ++..|..+|.|...|++. +++.+.+.+ -|.+.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf-~---sksDVfAlQf~~s~n--Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF-Q---SKSDVFALQFAGSDN--LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSS 300 (425)
T ss_pred ecccccceeEEEEeeccccccc-c---cchhHHHHHhcccCC--eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcc
Confidence 4455566777777776543221 1 234566666666555 899999999999999973 234566665 58899
Q ss_pred eEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc--eEEEEEcCCCCEEEEEeCCCc
Q 010302 88 VKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT--VSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 88 V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~v~~spdg~~l~s~s~D~~ 164 (513)
|+++..-. ++++|++.+.+|.|++||.+..++ +..+.+..+|-+. ..-+...+....+++++.|..
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhc-----------ccceeeeecccccccccccccccccceEEEccCeeE
Confidence 99998776 788999999999999999987554 3346666666432 223445667778888999999
Q ss_pred EEEEEcCCCeEEEEec
Q 010302 165 IRVFWFRTGKLRRVYD 180 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~ 180 (513)
.|||.+++|.++.++.
T Consensus 370 tRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIP 385 (425)
T ss_pred EEEEecccCceeeccC
Confidence 9999999999988775
No 309
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=9.1e-07 Score=87.13 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=109.9
Q ss_pred CCCEEEEEeCCCcEEEEEccC-C----ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 6 DGLLCCSISNDKSVKIYDVVN-Y----DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~-~----~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+.+-++++|.|++|++|.++. + .....+....|...+..+-|..+.. .++++ |+-|++||.- -++++..
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~giHlWDPF--igr~Laq 819 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGIHLWDPF--IGRLLAQ 819 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcceeeccc--ccchhHh
Confidence 445688999999999999973 2 2234566668889999998887765 55554 6789999986 4555543
Q ss_pred ee--cCCCCeEEEEEcC--CCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 81 KK--VHMGPVKVMRYNP--VFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 81 ~~--~h~~~V~~l~~sp--~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
.. ...+.+..+..-| +...+ +-++...+++++|.+..+...+ -.+..-.+.++.+.+++..|.|++
T Consensus 820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E---------~kVcna~~Pna~~R~iaVa~~GN~ 890 (1034)
T KOG4190|consen 820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE---------LKVCNAPGPNALTRAIAVADKGNK 890 (1034)
T ss_pred hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee---------EEeccCCCCchheeEEEeccCcch
Confidence 22 2223333333334 33344 4447888999999887443100 001111234566899999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
++.+-.+|+|.+.|.++|+.+..+.
T Consensus 891 lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 891 LAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred hhHHhcCCcEEEEecCCCceeccCC
Confidence 9999999999999999999887664
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.42 E-value=4.1e-05 Score=70.44 Aligned_cols=177 Identities=11% Similarity=0.139 Sum_probs=103.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC-----CCCCcEEEEEEcCCC-----cceEEEEeCCCCeEEEEec
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP-----FIPGAVEWVYKQGDV-----KAGLAISDRNSSFVHIYDA 70 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~-----~~~~~v~~v~~s~~~-----~~~~l~s~~~d~~I~iwd~ 70 (513)
++||||+.+||.+...|+|++||+....+ ..+... .....+..+.|.... ...+++. .-.|.++=|-+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y~G~L~Sy~v 126 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-NYRGQLRSYLV 126 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEE-eccceeeeEEE
Confidence 58999999999999999999999975332 222211 112345555554321 1113332 23455554443
Q ss_pred CC---CCCcceEEee---cCCCCeEEEEEcCCCCEEEEEcCC-C----------cEEEecCCCCCCCCcceeeeec----
Q 010302 71 RA---DSNEPLISKK---VHMGPVKVMRYNPVFDTVISADDK-G----------IIEYWSPHTLQFPESEVSFRLK---- 129 (513)
Q Consensus 71 ~~---~~~~~i~~~~---~h~~~V~~l~~sp~~~~l~s~s~d-g----------~i~iwd~~~~~~~~~~~~~~~~---- 129 (513)
.. ...+..+++. .+...|.++.|+|..++|+.|+.. . -+.-|-+-+.. |-........
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS-PYYKQVTSSEDDIT 205 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC-CcEEEccccCcccc
Confidence 21 1334444444 356789999999999988777632 1 14445321110 0000000000
Q ss_pred -----------CCcccccc-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 130 -----------SDTNLFEI-LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 130 -----------~~~~~~~~-~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
.....+.. ......|..|..||||+.||+...+|.|.+|++.+-++.+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 00000011 1135679999999999999999999999999999877766554
No 311
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.41 E-value=2.9e-05 Score=72.76 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=124.2
Q ss_pred CCEEEEEeCCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC--CCcceEEeec
Q 010302 7 GLLCCSISNDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD--SNEPLISKKV 83 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~--~~~~i~~~~~ 83 (513)
..-+.+.+.|.++|||--. .++.-..+. ..-+..+..+.+..... .++.+-.++++.-+.+... .....+....
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~--~L~vg~~ngtvtefs~sedfnkm~~~r~~~~ 112 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESR--RLYVGQDNGTVTEFALSEDFNKMTFLKDYLA 112 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccce--EEEEEEecceEEEEEhhhhhhhcchhhhhhh
Confidence 3447889999999999543 333322222 13457788888888777 7888888888887765311 2344555568
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCCcEEEecC-CCCCC--------CCcc------ee-------------eeecCCcccc
Q 010302 84 HMGPVKVMRYNPVFDTVISADDKGIIEYWSP-HTLQF--------PESE------VS-------------FRLKSDTNLF 135 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~-~~~~~--------~~~~------~~-------------~~~~~~~~~~ 135 (513)
|...|..+.|+....++++.+.|..+. |.. +.+.. +... +. +....-..+.
T Consensus 113 h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~ 191 (404)
T KOG1409|consen 113 HQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLIT 191 (404)
T ss_pred hhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEE
Confidence 999999999999999999999998764 522 21111 1110 11 1122344566
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE-EEEecccHHHHHHHhc
Q 010302 136 EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQR 191 (513)
Q Consensus 136 ~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~ 191 (513)
.+.+|.+.+.+++|.|..+.|.+|+.|..+.+||+--.+- ...+.+|...++.++.
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 7788999999999999999999999999999999865432 3345566666555544
No 312
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.41 E-value=5.6e-07 Score=99.61 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=110.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe---CCCCeEEEEecCCCCC-c
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD---RNSSFVHIYDARADSN-E 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~---~~d~~I~iwd~~~~~~-~ 76 (513)
+.|+.+|+.+..+..||.+.+|.+.. ...+....|......+.|... +++++ +.++.+.+||...... .
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~p---k~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQASP---KPYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccCC---cceeccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccc
Confidence 35889999999999999999999962 233344467777777777652 34433 3578899999652222 2
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
.++ .+|...++++++.|..++|+||+.+|.|++||++.. +.++.+.. +. ...++
T Consensus 2330 ~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr--------------ql~h~~~~---------~~-~~~~f 2383 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR--------------QLRHTFQA---------LD-TREYF 2383 (2439)
T ss_pred eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH--------------HHHHHhhh---------hh-hhhee
Confidence 333 689999999999999999999999999999999763 33433332 44 56689
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEec
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
++++..|.|+||++..-.+++++.
T Consensus 2384 ~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eccCcccceEEEEccccchhhcCc
Confidence 999999999999998877776664
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.37 E-value=0.00029 Score=66.56 Aligned_cols=200 Identities=17% Similarity=0.130 Sum_probs=117.0
Q ss_pred eEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEc-CCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQ-GDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s-~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
.|.+ +|.++.+--..+.|..|+..++... .+.+. . ...+.+. +++. ++++.. +.+.++|+..+..+.+.
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~---~-~~G~~~~~~~g~--l~v~~~--~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP---G-PNGMAFDRPDGR--LYVADS--GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS---S-EEEEEEECTTSE--EEEEET--TCEEEEETTTTEEEEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC---C-CceEEEEccCCE--EEEEEc--CceEEEecCCCcEEEEe
Confidence 5777 6777777667899999999876543 33322 2 5555665 5543 555543 34566688622223333
Q ss_pred Eee--c-CCCCeEEEEEcCCCCEEEEEcCC--------CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEE
Q 010302 80 SKK--V-HMGPVKVMRYNPVFDTVISADDK--------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIE 148 (513)
Q Consensus 80 ~~~--~-h~~~V~~l~~sp~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (513)
... . .......+++.|+|++.++.... |.+..++.. ++ .......-...+.++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---------------~~~~~~~~~~pNGi~ 140 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---------------VTVVADGLGFPNGIA 140 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------------EEEEEEEESSEEEEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------------EEEEecCcccccceE
Confidence 332 1 34567889999999977776543 345555553 11 222222334578999
Q ss_pred EcCCCCEEE-EEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 149 VSPDGKQFS-ITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 149 ~spdg~~l~-s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
|+||++.|. +-+..+.|..|++.. +..+... +...+- . .....+..++
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~---------------------------~~~~~~--~-~~~g~pDG~~ 190 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNR---------------------------RVFIDF--P-GGPGYPDGLA 190 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEE---------------------------EEEEE---S-SSSCEEEEEE
T ss_pred ECCcchheeecccccceeEEEeccccccceeee---------------------------eeEEEc--C-CCCcCCCcce
Confidence 999999775 555678888888853 2211100 000000 0 0001245789
Q ss_pred EcCCCCEEEEcc-ccceEEEEcccCcEEEEeC
Q 010302 227 FDESSNFLIYAT-LLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 227 fd~~g~~li~~s-~~gi~v~d~~t~~~v~~~g 257 (513)
+|.+|++.+... ...|.++|.. |+++..+.
T Consensus 191 vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 191 VDSDGNLWVADWGGGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp EBTTS-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred EcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence 999999777654 4469999997 88887774
No 314
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=0.00024 Score=72.30 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=72.9
Q ss_pred cEEEEEEcCCCcceEE-EEeC-CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEE-EEcCCC--cEEEecCC
Q 010302 41 AVEWVYKQGDVKAGLA-ISDR-NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKG--IIEYWSPH 115 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l-~s~~-~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg--~i~iwd~~ 115 (513)
......|+|+++..++ .+-. .+..|.++|+. +++.. .+...........|+|||+.++ +.+.++ .|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~--tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY--TGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC--CCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 6678899999986344 3433 35778999986 44433 2333455567788999998764 444444 45555665
Q ss_pred CCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCeE
Q 010302 116 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DR--RIRVFWFRTGKL 175 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-D~--~I~iwd~~tg~~ 175 (513)
+++ ...+..+........|+|||+.|+..+. .+ .|.+.|+.+|+.
T Consensus 266 ~g~---------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 266 TKT---------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred CCc---------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 422 2233333332345679999998886663 23 566777776665
No 315
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.27 E-value=0.00092 Score=65.61 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=73.0
Q ss_pred CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC--------CCCeEEEEecCCCCCcceEEeecCCC--
Q 010302 17 KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR--------NSSFVHIYDARADSNEPLISKKVHMG-- 86 (513)
Q Consensus 17 ~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~--------~d~~I~iwd~~~~~~~~i~~~~~h~~-- 86 (513)
++|.+.|..+++.+..+.....+.. + .+++++.++++... .+..|.+||.. +.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~---~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP---V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--THLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce---e-ECCCCCEEEEEeccccccccCCCCCEEEEEECc--cCcEEeEEccCCCch
Confidence 8999999999998888775544332 4 88998864444431 67899999998 8888888863222
Q ss_pred -----CeEEEEEcCCCCEEEEEc-C-CCcEEEecCCCCCC
Q 010302 87 -----PVKVMRYNPVFDTVISAD-D-KGIIEYWSPHTLQF 119 (513)
Q Consensus 87 -----~V~~l~~sp~~~~l~s~s-~-dg~i~iwd~~~~~~ 119 (513)
.-..++++|+|++++... . +..+.+.|+.+.+.
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 234788999999988766 3 68899999988665
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.22 E-value=0.00068 Score=64.36 Aligned_cols=225 Identities=13% Similarity=0.065 Sum_probs=135.9
Q ss_pred CeEec-CCCEEEEEeCCCc-EEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe-----CCCCeEEEEecCCC
Q 010302 1 MQVSV-DGLLCCSISNDKS-VKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD-----RNSSFVHIYDARAD 73 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~-v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~-----~~d~~I~iwd~~~~ 73 (513)
++.+| ++..+|.+-.-|+ ..+||..+++....+.......---.-.||+++. ++.+. ...|.|-|||.. .
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVyd~~-~ 86 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVYDAA-R 86 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEEECc-C
Confidence 45678 5667777777665 6689999999887765321111122356899998 44443 336789999996 4
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcC-------CCcEEEecCCCCCCCCcceeeeecCCccccc--c--ccCCc
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADD-------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFE--I--LKSKT 142 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~ 142 (513)
+.+.+..+..|--.-..+.+.|||+.|+.+-. .|..++ ++.+++ ......+..+++.+.+ + ..|..
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~--psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQ--PSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcC--CceEEEecCCCceeeeeecCcccccc
Confidence 56677777766666678899999988876642 122332 233322 1122334555665554 4 23777
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcE-----EEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRI-----RVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 217 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I-----~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~ 217 (513)
.+..+++.++|..++..=..+.- -+.-.+.++.+..+.... +....
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~-----------------------------~~~~~ 214 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPE-----------------------------EQWRR 214 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCCh-----------------------------HHHHh
Confidence 89999999998776543322210 111111111111111111 11111
Q ss_pred CCCCCCceEEcCCCCEEEEccccc--eEEEEcccCcEEEEeCCCC
Q 010302 218 ETAPPSNAIFDESSNFLIYATLLG--IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~g--i~v~d~~t~~~v~~~g~~~ 260 (513)
.....-+|+++.+|.+++..+-.| +.+||..+|+++....-.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD 259 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc
Confidence 223456899999999998887765 8999999999988764433
No 317
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.21 E-value=2.3e-05 Score=74.97 Aligned_cols=160 Identities=15% Similarity=0.157 Sum_probs=92.1
Q ss_pred EEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--CcceEEeecCCCCeEEEEEcCCCCEEEEE---cCCCcEEEecCCCC
Q 010302 43 EWVYKQGDVKAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVFDTVISA---DDKGIIEYWSPHTL 117 (513)
Q Consensus 43 ~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~--~~~i~~~~~h~~~V~~l~~sp~~~~l~s~---s~dg~i~iwd~~~~ 117 (513)
..+..++.+. +++.+..+....+++..... .+++... .-...-+++.|..+......+ +....+.+|....
T Consensus 66 ~~~~~s~~~~--llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 66 ALVLTSDSGR--LVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccCCCce--EEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 3344455555 66666666776677665211 1222222 122223445555544444333 3444555665432
Q ss_pred CCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcc
Q 010302 118 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 197 (513)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 197 (513)
.+...+.+|-..+..++||||+++++++..|..||+-.+..--.+..+
T Consensus 142 --------------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf------------------ 189 (390)
T KOG3914|consen 142 --------------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF------------------ 189 (390)
T ss_pred --------------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh------------------
Confidence 223445689999999999999999999999999999766442222221
Q ss_pred ccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEe
Q 010302 198 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRIL 256 (513)
Q Consensus 198 ~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~ 256 (513)
-+-+.+|-. .++.- +++.|++++.+ .+++||+.+|+.+.++
T Consensus 190 clGH~eFVS-----------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 190 CLGHKEFVS-----------------TISLT-DNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ccccHhhee-----------------eeeec-cCceeeecCCCCcEEEEecccCCccccc
Confidence 111112222 22222 23446666544 5999999999998776
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.20 E-value=0.00038 Score=66.04 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=104.7
Q ss_pred eEecCCCEEEEEeC-----CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC---------------
Q 010302 2 QVSVDGLLCCSISN-----DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN--------------- 61 (513)
Q Consensus 2 ~~s~dg~~las~s~-----D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~--------------- 61 (513)
.||+||++|.+.-. .|.|-|||.. ....++-++..+.-....+.+.|+++.++++-|+-
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 59999999998743 5789999998 23333444445555566778889987555543322
Q ss_pred -CCeEEEEecCCCCCcceEE--e--ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc-
Q 010302 62 -SSFVHIYDARADSNEPLIS--K--KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF- 135 (513)
Q Consensus 62 -d~~I~iwd~~~~~~~~i~~--~--~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~- 135 (513)
+..+...|.. +++.+.. + ..|+-.|.-++++++|..++..-..+. ....+.. ....+.++.+.
T Consensus 136 M~psL~~ld~~--sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~-------~~~~~PL--va~~~~g~~~~~ 204 (305)
T PF07433_consen 136 MQPSLVYLDAR--SGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD-------PGDAPPL--VALHRRGGALRL 204 (305)
T ss_pred cCCceEEEecC--CCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC-------CCccCCe--EEEEcCCCccee
Confidence 2224444555 6666665 3 247778999999998876655433322 1111111 11111111111
Q ss_pred ------ccccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEe
Q 010302 136 ------EILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 136 ------~~~~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~ 179 (513)
....-.+++-+|++++++..+++.| .-+.+.+||..+|+++...
T Consensus 205 ~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 205 LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 1223457899999999999887767 6889999999999987654
No 319
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.18 E-value=0.001 Score=67.13 Aligned_cols=157 Identities=17% Similarity=0.098 Sum_probs=86.0
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
++..++.++.|+.+..+|..+++.+-...+.. .+. .+|.-....++.+..++.+..||.+ +++.+.......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~---~~p~v~~~~v~v~~~~g~l~a~d~~--tG~~~W~~~~~~ 175 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVL---SPPLVANGLVVVRTNDGRLTALDAA--TGERLWTYSRVT 175 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eee---cCCEEECCEEEEECCCCeEEEEEcC--CCceeeEEccCC
Confidence 45566667777888888887777765544321 111 1111001144455678889999987 777766654322
Q ss_pred CCeE-----EEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC--CCCEEEE
Q 010302 86 GPVK-----VMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP--DGKQFSI 158 (513)
Q Consensus 86 ~~V~-----~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~s 158 (513)
.... +... .+..++.++.++.+..+|+++++. .|........... .......+.-+| .+..+..
T Consensus 176 ~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~-----~W~~~~~~~~g~~--~~~~~~~~~~~p~~~~~~vy~ 246 (377)
T TIGR03300 176 PALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP-----LWEQRVALPKGRT--ELERLVDVDGDPVVDGGQVYA 246 (377)
T ss_pred CceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE-----eeeeccccCCCCC--chhhhhccCCccEEECCEEEE
Confidence 2111 1111 234677788888999899877643 2222111100000 000000010111 3556777
Q ss_pred EeCCCcEEEEEcCCCeEEEEe
Q 010302 159 TSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~ 179 (513)
++.++.+..||..+|+.+...
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEcCCEEEEEECCCCcEEEee
Confidence 888999999999999876544
No 320
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.00016 Score=73.86 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=89.3
Q ss_pred CcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-------------cceEEeecCCCCeEEEEEcCCCCEEEEEcCC
Q 010302 40 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-------------EPLISKKVHMGPVKVMRYNPVFDTVISADDK 106 (513)
Q Consensus 40 ~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~-------------~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d 106 (513)
....++.|..... +++.|+.||.+++..+...+. ..-+++.+|...|.-+.|+.+.+.|-+.+.+
T Consensus 15 vkL~c~~WNke~g--yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG--YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCC--eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567888877766 999999999999987643211 2224567999999999999999999999999
Q ss_pred CcEEEecCCCCCCCCcceeeeecCCcccccc--ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 107 GIIEYWSPHTLQFPESEVSFRLKSDTNLFEI--LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
|.|.+|-+-.++. .... ...++.|.+++|+.||..++..-.||.|.+=.+.
T Consensus 93 GlIiVWmlykgsW--------------~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSW--------------CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred ceEEEEeeecccH--------------HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 9999997755332 2222 2256779999999999999988889888775443
No 321
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.00025 Score=70.60 Aligned_cols=153 Identities=10% Similarity=0.127 Sum_probs=104.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-----------CCCeEEEEe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-----------NSSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-----------~d~~I~iwd 69 (513)
+.|||-|.||+|--.- -|.+|--++++.++.+. | ..+..+.|||..+ +|++=+ ....++|||
T Consensus 216 v~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~---H-p~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY---H-PGVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EEecCCceEEEEEecc-ceeeecCccHHHHHhcc---C-CCceeeecCCccc--eEEEecCCccccCcccCCCceEEEEE
Confidence 5799999999987654 47799888877766654 4 3588999999988 666533 235789999
Q ss_pred cCCCCCcceEEeec--CCCCe-EEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceE
Q 010302 70 ARADSNEPLISKKV--HMGPV-KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVS 145 (513)
Q Consensus 70 ~~~~~~~~i~~~~~--h~~~V-~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 145 (513)
+. ++...+.+.. ....+ .-..||.|++++|--..+ .|.|++..++.+ ...+. .-..|.
T Consensus 289 I~--tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l---------------ld~Kslki~gIr 350 (698)
T KOG2314|consen 289 IA--TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML---------------LDKKSLKISGIR 350 (698)
T ss_pred cc--ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee---------------ecccccCCcccc
Confidence 98 8888887764 22223 346899999999876664 688997755322 11111 224578
Q ss_pred EEEEcCCCCEEEEEeC-----CCcEEEEEcCCCeEEEE
Q 010302 146 AIEVSPDGKQFSITSP-----DRRIRVFWFRTGKLRRV 178 (513)
Q Consensus 146 ~v~~spdg~~l~s~s~-----D~~I~iwd~~tg~~~~~ 178 (513)
...|||.++.||--.. -..+.+-.+.+++.+++
T Consensus 351 ~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 351 DFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred CcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 8899999998885442 23455555555555554
No 322
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.14 E-value=4.9e-05 Score=77.85 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=113.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC-CceeEEEEcCCCCCcEEEEEEcCCCcce-EEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN-YDMMLMIRLPFIPGAVEWVYKQGDVKAG-LAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~-~~~~~~~~l~~~~~~v~~v~~s~~~~~~-~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
+.++|.|+-+|.++.-|- .+-|+.. +..-..+. ...+-.+..++|++....- .+++.+. ..-.+|++...+.+.+
T Consensus 30 ~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAI 106 (1081)
T ss_pred eeeccccchhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcCCccce
Confidence 357788888888886653 3555542 22211111 1223456777888765433 4555544 4456788764444433
Q ss_pred -EEeecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 79 -ISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 79 -~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
..+.+|...|+.+-|+|+ ...+++++.|-.+..||+++.. .+++.+..-......+.|+--...+
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-------------~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-------------RPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-------------cceeeeecccccCceeeecccCcch
Confidence 345599999999999995 5688999999999999998743 3344444444556788998744444
Q ss_pred EEEeCCCcEEEEEcCCC-eEEEEecccHHHHHHHhc
Q 010302 157 SITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQR 191 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~ 191 (513)
...+..+.|++||.+.| ..+..+++|...+..+.+
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence 44567888999999985 456677776655444443
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.13 E-value=0.00077 Score=62.22 Aligned_cols=237 Identities=10% Similarity=0.108 Sum_probs=131.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC--ceeEEEEcCCCC-CcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY--DMMLMIRLPFIP-GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~--~~~~~~~l~~~~-~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++.+.||++||.. .|..|-|-..+.. ..+..-.++..+ -.=+.++|||++. +++.+...|+|.++|+. +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~---g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLM---GSE 76 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecc---cce
Confidence 4678899999864 5777877766532 111222222222 2346789999998 88888999999999994 455
Q ss_pred eEEeecC-------CCCeEEEEEcCCC------CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcc--cccccc-CC
Q 010302 78 LISKKVH-------MGPVKVMRYNPVF------DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTN--LFEILK-SK 141 (513)
Q Consensus 78 i~~~~~h-------~~~V~~l~~sp~~------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~ 141 (513)
+..+... ...|..+.|-+.. ..|+.-..+|.++-+-+..+.. +.-.. .+.+.. +.
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~---------q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN---------QGYQENHSFSFSSHYP 147 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC---------CcceeeEEEEecccCC
Confidence 5555421 2456677775432 1345555666666553311100 00111 223333 46
Q ss_pred cceEEEEEcCCCCEEEEEeC-CC----------cEEEEEcCCCeEEEEecccH-HHHHHHhcCCCCccccccccccceee
Q 010302 142 TTVSAIEVSPDGKQFSITSP-DR----------RIRVFWFRTGKLRRVYDESL-EVAQDLQRSDAPLYRLEAIDFGRRMA 209 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s~s~-D~----------~I~iwd~~tg~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~~~r~~ 209 (513)
..|.+++++|.-+.|+.|+. .. -+.-|.+-++......-... +.+...... ..++.+.. -++.
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~-~~~~~~~~----~~~f 222 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR-RGLLRIPS----FKFF 222 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccc-cceeeccc----eeee
Confidence 68999999999998877662 11 35677666554433221100 000000000 00000000 0000
Q ss_pred eeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC
Q 010302 210 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 210 ~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
. + .......+..|..+|+|++|++....| |.+|++-+-++.+...-+|
T Consensus 223 s-~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 223 S-R--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred e-c--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 0 0 011234556789999999999987666 9999998877666654443
No 324
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.12 E-value=0.0014 Score=73.07 Aligned_cols=159 Identities=11% Similarity=0.152 Sum_probs=98.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC--------------------C-----------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP--------------------F----------------------- 37 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~--------------------~----------------------- 37 (513)
++||||++.||....++++-+.+ .+++.+....+. +
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~ 204 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEG 204 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccC
Confidence 47999999999999999988764 233333222110 0
Q ss_pred ---CCCcEEEEEEcCCCcceEEEEeC----C--CCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcC---
Q 010302 38 ---IPGAVEWVYKQGDVKAGLAISDR----N--SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD--- 105 (513)
Q Consensus 38 ---~~~~v~~v~~s~~~~~~~l~s~~----~--d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~--- 105 (513)
....-..++|..|+. +++..+ . -..++||+- .++...+-..-.+--.+++|-|.|+++++.-.
T Consensus 205 ~~s~dd~~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~R---eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 205 KLSWDDGRVRISWRGDGE--YFAVSSVEPETGSRRVIRVYSR---EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred ccccCCCceEEEECCCCc--EEEEEEEEcCCCceeEEEEECC---CceEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 112345678888888 443322 1 367899986 35444443333333457899999999988764
Q ss_pred CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 010302 106 KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRR 177 (513)
Q Consensus 106 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~ 177 (513)
...|-+|.-+-.+. ++-...+......|..++|++|+..||....|. |.+|-..+.....
T Consensus 280 ~~~VvFfErNGLrh-----------geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 280 RHDVVFFERNGLRH-----------GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred CcEEEEEecCCcEe-----------eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 23344443211110 111111123455689999999999999877555 9999988877543
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.11 E-value=0.00013 Score=73.56 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=71.2
Q ss_pred EEEecCCCCCcceEEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 66 HIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 66 ~iwd~~~~~~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
.+|++.....+.+.... ...+.|.+++++|+.+.++.|..||+|.+||.... +..+..+.-.+
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----------------~t~~~ka~~~P 302 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----------------VTLLAKAEFIP 302 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC----------------eeeeeeecccc
Confidence 56676422222222222 67788999999999999999999999999998552 22233445568
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q 010302 145 SAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175 (513)
Q Consensus 145 ~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~ 175 (513)
..++|+|+|..+++|+..|.+.+||+.-...
T Consensus 303 ~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 303 TLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred eEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 8999999999999999999999999876544
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00014 Score=75.54 Aligned_cols=181 Identities=10% Similarity=0.089 Sum_probs=119.6
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
.+++||-|..+|.|++++.... ....+. |... ...|. +++||+.||+|.|-.+- +.+...++. ..
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~-~~~~~~---~s~~------~~~Ge--y~asCS~DGkv~I~sl~--~~~~~~~~d-f~ 112 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGN-PKTNFD---HSSS------ILEGE--YVASCSDDGKVVIGSLF--TDDEITQYD-FK 112 (846)
T ss_pred hcceeeeccccceEEEEecCCc-cccccc---cccc------ccCCc--eEEEecCCCcEEEeecc--CCccceeEe-cC
Confidence 3678999999999999988532 211111 1111 23344 99999999999999886 555555443 45
Q ss_pred CCeEEEEEcCC-----CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 86 GPVKVMRYNPV-----FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 86 ~~V~~l~~sp~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
.++.+++++|+ .+.+++|+..| +.++.-+-.. ......+..-.+.|.+++| .|+++|-++
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg------------nk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG------------NKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc------------CccceeeecCccceEEEEe--cCcEEEEec
Confidence 78999999997 56899999998 6665332211 0111135556789999999 888888776
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.+ -|++||..+++.+..+...... + ....-+..+.|.++.+ |+.|-.+
T Consensus 178 d~-Gv~vyd~~~~~~l~~i~~p~~~----------------------~--------R~e~fpphl~W~~~~~-LVIGW~d 225 (846)
T KOG2066|consen 178 DD-GVKVYDTPTRQRLTNIPPPSQS----------------------V--------RPELFPPHLHWQDEDR-LVIGWGD 225 (846)
T ss_pred CC-CcEEEeccccceeeccCCCCCC----------------------C--------CcccCCCceEecCCCe-EEEecCC
Confidence 55 4899999998877655431100 0 0012335678887655 5556666
Q ss_pred ceEEEEcc
Q 010302 241 GIKIVNLH 248 (513)
Q Consensus 241 gi~v~d~~ 248 (513)
.|+|..+.
T Consensus 226 ~v~i~~I~ 233 (846)
T KOG2066|consen 226 SVKICSIK 233 (846)
T ss_pred eEEEEEEe
Confidence 78888776
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=1.9e-06 Score=89.43 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=132.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++||-+.++|+.|+..|.|++|++.+|....... +|...+..+.-+.++...+..+.+......+|+... .+.+.++
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s-~~~~~Hs 1183 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS-TGGPRHS 1183 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCcccccccc--ccccccccccccCCcceeeeeccccCchHHHhcccc-ccCcccc
Confidence 4788899999999999999999999988766644 888889988888888754444555555678999863 5666666
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-c---cCCcceEEEEEcCCCCEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-L---KSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~v~~spdg~~l 156 (513)
+. .-.++.|+.....-+.|.......+||+++.. .+.++ . +..-.-++..|||+...+
T Consensus 1184 f~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~--------------~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1184 FD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCS--------------PLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred cc----ccceeehhhhHHHHHhcccccceEEEecccCc--------------HHHHhcCcchhhhhhccccccCCCcceE
Confidence 64 34678888764444555555568899998732 23331 1 111123678899999887
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
. .|| -+||++..+.++.|+.-. ....=.|+|+|+-++.
T Consensus 1246 l---ndG--vLWDvR~~~aIh~FD~ft-------------------------------------~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQFT-------------------------------------DYGGGGFHPSGNEVII 1283 (1516)
T ss_pred e---eCc--eeeeeccHHHHhhhhhhe-------------------------------------ecccccccCCCceEEe
Confidence 6 465 479998877766665210 0012259999998887
Q ss_pred ccccceEEEEcccCcEEEEeC
Q 010302 237 ATLLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 237 ~s~~gi~v~d~~t~~~v~~~g 257 (513)
.+ .|||+.|-++++.+-
T Consensus 1284 NS----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1284 NS----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred ec----hhhhhHHHHHHhcCc
Confidence 66 589998887777664
No 328
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.05 E-value=0.00035 Score=68.98 Aligned_cols=179 Identities=13% Similarity=0.049 Sum_probs=115.0
Q ss_pred eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe--C-------CCCeEEEEecCCCCCcceEEeecC
Q 010302 14 SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD--R-------NSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 14 s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~--~-------~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
+.+++++||.+..+..+....+- ...-+.+.|.+.++.+++..- . ....+.|+++. ..-+.....-
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~---e~~i~V~~~~ 273 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT---ERSIPVEKDL 273 (561)
T ss_pred CCCcEEEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec---ccccceeccc
Confidence 46789999999876665554422 233455677777775433211 1 12457888885 3333333355
Q ss_pred CCCeEEEEEcCCCCEEEEEc--CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-
Q 010302 85 MGPVKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP- 161 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~- 161 (513)
.++|...+|+|.++.|++.+ .+-.+.++|++.. .. +......=+.+.|||.+++++.++-
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---------------l~--~~~Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---------------LR--FYFPEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc---------------eE--EecCCcccccccccCcccEEEEecCC
Confidence 78999999999988875544 7778888988651 11 2222334467889999999998775
Q ss_pred --CCcEEEEEcCCCeEEE-EecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 162 --DRRIRVFWFRTGKLRR-VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 162 --D~~I~iwd~~tg~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
.|.+-+||........ .+.+. ...-+-|+|+|+|+....
T Consensus 337 nl~gni~i~~~~~rf~~~~~~~~~--------------------------------------n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAFNGL--------------------------------------NTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred ccccceEEeccCCceEEEEEeecC--------------------------------------CceEeeccCCceEEEecC
Confidence 4789999987654333 44321 112345999999988764
Q ss_pred cc-------ceEEEEcccCcE
Q 010302 239 LL-------GIKIVNLHTNKV 252 (513)
Q Consensus 239 ~~-------gi~v~d~~t~~~ 252 (513)
.. +|++||+..-.+
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CCcccccCcceEEEEecCchh
Confidence 32 589999854443
No 329
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.05 E-value=0.0025 Score=71.00 Aligned_cols=207 Identities=11% Similarity=0.048 Sum_probs=121.6
Q ss_pred CCcEEEEEEcCCCcceEEEEeCCCCeEEEE----ecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecC
Q 010302 39 PGAVEWVYKQGDVKAGLAISDRNSSFVHIY----DARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 114 (513)
Q Consensus 39 ~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw----d~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~ 114 (513)
...+.++.+.++...+++ +..+|.|.+. +.. ...+.....-...|.+++||||..+|+..+.++++-+..
T Consensus 75 ~~~ivs~~yl~d~~~l~~--~~~~Gdi~~~~~~~~~~---~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt- 148 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCI--ALASGDIILVREDPDPD---EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT- 148 (928)
T ss_pred CCcEEEEEeccCCCcEEE--EECCceEEEEEccCCCC---CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-
Confidence 356888888888874444 4456678777 443 222223333457899999999999999998888886652
Q ss_pred CCCCCCCc---------------------ceeeeecCCcc--------------ccccccCCcceEEEEEcCCCCEEEEE
Q 010302 115 HTLQFPES---------------------EVSFRLKSDTN--------------LFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 115 ~~~~~~~~---------------------~~~~~~~~~~~--------------~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
+++....+ .=+|.-+.++. ...+. +...-..++|-.||+++|+.
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEE
Confidence 11111000 00111111111 01112 34455689999999999987
Q ss_pred eC---C---CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccc---cceeeeeee------ccc---cCCCC
Q 010302 160 SP---D---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF---GRRMAVEKE------IEK---TETAP 221 (513)
Q Consensus 160 s~---D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---~~r~~~e~e------~~~---~~~~~ 221 (513)
+. + ..||||+- .|.+..+-+.-...-..+.|.|...+....... ...+..||. +.- .....
T Consensus 228 s~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEK 306 (928)
T ss_pred EEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCce
Confidence 74 2 57999984 477655544333333455666654332211111 122334542 111 22345
Q ss_pred CCceEEcCCCCEEEEccccceEEEEcccCcEE
Q 010302 222 PSNAIFDESSNFLIYATLLGIKIVNLHTNKVS 253 (513)
Q Consensus 222 ~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v 253 (513)
+..+.|+.++..|+....+.|++|-..+....
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWY 338 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDRVQLWTRSNYHWY 338 (928)
T ss_pred eeEEEECCCCCEEEEEecCCceEEEeeCCEEE
Confidence 67889999999999887777999987665543
No 330
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=1e-05 Score=75.69 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=109.2
Q ss_pred EEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc
Q 010302 57 ISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE 136 (513)
Q Consensus 57 ~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 136 (513)
++.+.+-.+.+-|+. ++ .-..+. ..+.|.++.|.-.++++..|...|.|-..|++.... .......
T Consensus 228 fs~G~sqqv~L~nve--tg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----------G~~~~a~ 293 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVE--TG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----------GNGWCAQ 293 (425)
T ss_pred ecccccceeEEEEee--cc-cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----------CCCcceE
Confidence 455556667777775 22 223333 567789999998899999999999999999987421 0111222
Q ss_pred cccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE---EEEecccHHHHHHHhcCCCCccccccccccceeeeee
Q 010302 137 ILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 212 (513)
Q Consensus 137 ~~~~~~~v~~v~~sp-dg~~l~s~s~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~ 212 (513)
...|.+.|+++..-. ++++|++.+.+|+|++||.+--++ +.++++|.....-+
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l----------------------- 350 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL----------------------- 350 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc-----------------------
Confidence 335888888887766 888999889999999999987666 88998876442211
Q ss_pred eccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEeCCCC
Q 010302 213 EIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 213 e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~ 260 (513)
-+-.++...+|+++..+ ..+||.+..|.++.++....
T Consensus 351 -----------~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 -----------PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred -----------ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 11134455566655544 58999999999999885543
No 331
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.03 E-value=4.5e-05 Score=78.08 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=110.6
Q ss_pred eEecC-CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 2 QVSVD-GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 2 ~~s~d-g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
.|.|+ -..||+|+-|-.|..||+++-..- ......-......++|+--... ++++ +..+.|.+||.+ ....++..
T Consensus 121 n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-~ys~~~w~s~asqVkwnyk~p~-vlas-shg~~i~vwd~r-~gs~pl~s 196 (1081)
T KOG0309|consen 121 NFNPQHPDVLATCSVDTYVHAWDMRSPHRP-FYSTSSWRSAASQVKWNYKDPN-VLAS-SHGNDIFVWDLR-KGSTPLCS 196 (1081)
T ss_pred ccCCCCCcceeeccccccceeeeccCCCcc-eeeeecccccCceeeecccCcc-hhhh-ccCCceEEEecc-CCCcceEE
Confidence 34553 367999999999999999864321 1111111233445666533221 4444 556789999998 35678899
Q ss_pred eecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC--EEE
Q 010302 81 KKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK--QFS 157 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~ 157 (513)
+++|...|.++.|+. ....+.+++.|++++.||-.... +.-.....-+.+|+.-++-|=|. ++.
T Consensus 197 ~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt-------------~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 197 LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST-------------TESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc-------------cccceeccccCcceeccccccCceeEec
Confidence 999999999999986 45678899999999999875421 11111222334555555655332 222
Q ss_pred EEeC---------CCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCC
Q 010302 158 ITSP---------DRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDA 194 (513)
Q Consensus 158 s~s~---------D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~ 194 (513)
-.-. +.....|+..+ .+.++++.+|.+.+.+..|...
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r 310 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR 310 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc
Confidence 1111 23333455444 3678899999999998888654
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00013 Score=75.78 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=101.0
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCC---CcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGD---VKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~---~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
+|.++||||.||+|.|-.+-+.+......+. .++..++++|+ .+...+++|+..| +.++.-+.-..+.-..+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 6999999999999999999988887777644 67888999987 1122788888877 777653211111111355
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC
Q 010302 83 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D 162 (513)
.-.++|.++.| .|++++-++.+| |+++|+.+.+.... . +..........-...+.|.++.+.++ ++.
T Consensus 158 ~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~-----i---~~p~~~~R~e~fpphl~W~~~~~LVI--GW~ 224 (846)
T KOG2066|consen 158 EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTN-----I---PPPSQSVRPELFPPHLHWQDEDRLVI--GWG 224 (846)
T ss_pred cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeec-----c---CCCCCCCCcccCCCceEecCCCeEEE--ecC
Confidence 66789999999 788999999887 89999877443111 0 00001111122345688987776554 566
Q ss_pred CcEEEEEcC
Q 010302 163 RRIRVFWFR 171 (513)
Q Consensus 163 ~~I~iwd~~ 171 (513)
.+|+|..++
T Consensus 225 d~v~i~~I~ 233 (846)
T KOG2066|consen 225 DSVKICSIK 233 (846)
T ss_pred CeEEEEEEe
Confidence 778888876
No 333
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.02 E-value=0.004 Score=58.17 Aligned_cols=149 Identities=14% Similarity=0.058 Sum_probs=91.1
Q ss_pred CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEc
Q 010302 15 NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN 94 (513)
Q Consensus 15 ~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~s 94 (513)
++++|..||..+++.+-...+........... .+++. .++.++.++.+..||.. +++.+..... ...+.... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~--~v~~~~~~~~l~~~d~~--tG~~~W~~~~-~~~~~~~~-~ 73 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPDGG--RVYVASGDGNLYALDAK--TGKVLWRFDL-PGPISGAP-V 73 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEETT--EEEEEETTSEEEEEETT--TSEEEEEEEC-SSCGGSGE-E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceE-EEeCC--EEEEEcCCCEEEEEECC--CCCEEEEeec-ccccccee-e
Confidence 36899999999999988887632112222111 11233 45555688999999997 7888777764 22211111 2
Q ss_pred CCCCEEEEEcCCCcEEEecCCCCCCCCcceeee-ecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010302 95 PVFDTVISADDKGIIEYWSPHTLQFPESEVSFR-LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 173 (513)
Q Consensus 95 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg 173 (513)
..+..++.++.++.+..+|..+++. .|. ........ . .........++..++.+..++.|..+|.++|
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~-----~W~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKV-----LWSIYLTSSPPA-----G-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCE-----EEEEEE-SSCTC-----S-TB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred ecccccccccceeeeEecccCCcce-----eeeecccccccc-----c-cccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 2455666666788999999888653 333 11111100 0 1112222224888888888999999999999
Q ss_pred eEEEEecc
Q 010302 174 KLRRVYDE 181 (513)
Q Consensus 174 ~~~~~~~~ 181 (513)
+.+..+..
T Consensus 143 ~~~w~~~~ 150 (238)
T PF13360_consen 143 KLLWKYPV 150 (238)
T ss_dssp EEEEEEES
T ss_pred cEEEEeec
Confidence 99877653
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00012 Score=74.93 Aligned_cols=112 Identities=14% Similarity=0.041 Sum_probs=81.5
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE-
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS- 80 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~- 80 (513)
+++..+++++.|+.-|.+++|+-..+++... +..+..+.+.....+++.. +++.|+..+.|.++.++.........
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcc-cccCccceEEEEEecchhH--hhhhhcCCceEEeehhhccCCCcceee
Confidence 3567889999999999999999987766433 3223334455555666655 88888899999999886322111111
Q ss_pred --ee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 81 --KK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 81 --~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
.. .|...|++++|++++..+.+|+..|.|.+-.+..
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 5778999999999999999999999998775533
No 335
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.96 E-value=0.00016 Score=67.00 Aligned_cols=150 Identities=10% Similarity=0.152 Sum_probs=92.1
Q ss_pred CCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc-ceEEeecCC-----CCeEEEEEcCC-CCEEEEEcCCCc
Q 010302 36 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE-PLISKKVHM-----GPVKVMRYNPV-FDTVISADDKGI 108 (513)
Q Consensus 36 ~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~-~i~~~~~h~-----~~V~~l~~sp~-~~~l~s~s~dg~ 108 (513)
..|+.++.++++..+.. .++|+ .|-.|.+|++....+. -+-.++.|. .-|++..|+|. -+.+.-.+..|.
T Consensus 169 NaH~yhiNSiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 169 NAHPYHINSISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred ccceeEeeeeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 34667788888877766 55554 5678999988632221 122233443 35889999995 456666777899
Q ss_pred EEEecCCCCCCCCc-ceeeeec-CCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEecccHHH
Q 010302 109 IEYWSPHTLQFPES-EVSFRLK-SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEV 185 (513)
Q Consensus 109 i~iwd~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~ 185 (513)
|++-|++...+-.. .-.|... .+....-+..-...|..+.|+++|+++++-+ =-+++|||.+. ..+++++.-|-..
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l 324 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDL 324 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHH
Confidence 99999985322111 0001000 0111111223345688999999999998644 35799999986 5678887666554
Q ss_pred HHHH
Q 010302 186 AQDL 189 (513)
Q Consensus 186 i~~~ 189 (513)
...+
T Consensus 325 ~~~l 328 (460)
T COG5170 325 MDEL 328 (460)
T ss_pred HHHH
Confidence 4433
No 336
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.94 E-value=0.0081 Score=60.62 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=93.6
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
.+..+..++.++.|..+|..+++.+-...+..... ..+.. ++. .++.++.++.+..+|.. +++.+.......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~--~~p~v--~~~--~v~v~~~~g~l~ald~~--tG~~~W~~~~~~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLS--GGVGA--DGG--LVFVGTEKGEVIALDAE--DGKELWRAKLSS 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc--cceEE--cCC--EEEEEcCCCEEEEEECC--CCcEeeeeccCc
Confidence 45677788889999999999999877766543211 11111 223 55566778999999987 777776554222
Q ss_pred CCeEE-EEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCc
Q 010302 86 GPVKV-MRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 86 ~~V~~-l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~ 164 (513)
.+.+ ... .+..++.++.++.+..||.++++. .|..+.......+.....+ ... + ..++.++.++.
T Consensus 136 -~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-----~W~~~~~~~~~~~~~~~sp----~~~-~-~~v~~~~~~g~ 201 (377)
T TIGR03300 136 -EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-----LWTYSRVTPALTLRGSASP----VIA-D-GGVLVGFAGGK 201 (377)
T ss_pred -eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-----eeEEccCCCceeecCCCCC----EEE-C-CEEEEECCCCE
Confidence 2211 111 355677788899999999988653 3333322221111111111 111 3 46677788899
Q ss_pred EEEEEcCCCeEEEEe
Q 010302 165 IRVFWFRTGKLRRVY 179 (513)
Q Consensus 165 I~iwd~~tg~~~~~~ 179 (513)
+..+|.++|+.+...
T Consensus 202 v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 202 LVALDLQTGQPLWEQ 216 (377)
T ss_pred EEEEEccCCCEeeee
Confidence 999999999876543
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.85 E-value=0.0026 Score=59.46 Aligned_cols=171 Identities=12% Similarity=0.101 Sum_probs=96.0
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc---
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--- 76 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~--- 76 (513)
|+|+|+.+ ++|.....+.|..++. +|+.+..+.+.+ .+-...|.+..++. ++++.-.++.+.++++...+..
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~--~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGR--YVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTE--EEEEETTTTEEEEEEE----TT--E
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCE--EEEEEcCCCcEEEEEEeccccccch
Confidence 47899755 5555567788888886 578888888765 34577888876665 7888777899999988421111
Q ss_pred -ceEEee-----cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc
Q 010302 77 -PLISKK-----VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 150 (513)
Q Consensus 77 -~i~~~~-----~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 150 (513)
....+. .+...+-.++|+|.++.|+.+-+.....++.++...-+...... ..............+.+++++
T Consensus 103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS---DDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE---E-HHHH-HT--SS---EEEEE
T ss_pred hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec---cccccccccceeccccceEEc
Confidence 112222 24456899999999888888877777777755321100000000 000111111233457899999
Q ss_pred CCC-CEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 151 PDG-KQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 151 pdg-~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
|.. ++++....+..|..+| .+|+.+..+
T Consensus 180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred CCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 954 5666666788999999 788876655
No 338
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.84 E-value=0.0056 Score=57.20 Aligned_cols=195 Identities=17% Similarity=0.074 Sum_probs=113.0
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe-ec
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK-KV 83 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~-~~ 83 (513)
+++.++.+++.++.+..||..+|+.+....+........ .. .+. .++....++.+..+|.. +++.+... ..
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~---~~-~~~--~v~v~~~~~~l~~~d~~--tG~~~W~~~~~ 105 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP---VV-DGG--RVYVGTSDGSLYALDAK--TGKVLWSIYLT 105 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE---EE-ETT--EEEEEETTSEEEEEETT--TSCEEEEEEE-
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee---ee-ccc--ccccccceeeeEecccC--Ccceeeeeccc
Confidence 366777778899999999999999988887643222221 11 222 23333366689999987 88888874 32
Q ss_pred CC---CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcCCCCEEEEE
Q 010302 84 HM---GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 84 h~---~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~s~ 159 (513)
.. ...........++.++.+..++.|..+|+++++. .|............. .-..+..-....++ .+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 179 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-----LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVS 179 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-----EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEE
T ss_pred cccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-----EEEeecCCCCCCcceeeecccccceEEECC-EEEEE
Confidence 21 1122233333488888888899999999988653 333322111100000 00112222222345 66666
Q ss_pred eCCCc-EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 160 SPDRR-IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 160 s~D~~-I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
+.++. +.+ |+.+++.+.....+ . .......++..|+..+
T Consensus 180 ~~~g~~~~~-d~~tg~~~w~~~~~--------------------------------------~-~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 180 SGDGRVVAV-DLATGEKLWSKPIS--------------------------------------G-IYSLPSVDGGTLYVTS 219 (238)
T ss_dssp CCTSSEEEE-ETTTTEEEEEECSS----------------------------------------ECECEECCCTEEEEEE
T ss_pred cCCCeEEEE-ECCCCCEEEEecCC--------------------------------------C-ccCCceeeCCEEEEEe
Confidence 66775 555 99999865322100 0 0111345667777666
Q ss_pred -ccceEEEEcccCcEE
Q 010302 239 -LLGIKIVNLHTNKVS 253 (513)
Q Consensus 239 -~~gi~v~d~~t~~~v 253 (513)
...+..||+.+|+.+
T Consensus 220 ~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCCEE
Confidence 556999999999876
No 339
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.82 E-value=0.0057 Score=57.67 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=100.7
Q ss_pred eEe-cCCCEEEEEeCCCcEEEEEccCCceeEEEEcC--C-CCCcEEEEEEcCCCcceEEEEeCCC--------CeEEEEe
Q 010302 2 QVS-VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP--F-IPGAVEWVYKQGDVKAGLAISDRNS--------SFVHIYD 69 (513)
Q Consensus 2 ~~s-~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~--~-~~~~v~~v~~s~~~~~~~l~s~~~d--------~~I~iwd 69 (513)
++. ++|.+++ +.. +.+.++|..+++........ . .....+.+.+.+++. +.++.... +.|..++
T Consensus 46 ~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~ 121 (246)
T PF08450_consen 46 AFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRID 121 (246)
T ss_dssp EEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEE
T ss_pred EEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEEC
Confidence 455 5665555 444 45566699988776666542 2 335688899999988 66655433 3455555
Q ss_pred cCCCCCcceEEeecCCCCeEEEEEcCCCCEEE-EEcCCCcEEEecCCCCCC-CCcceeeeecCCccccccccCCcceEEE
Q 010302 70 ARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQF-PESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 70 ~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
.. ++ +..+...-.....|+|+|+++.|+ +-+..+.|..+++..... ... ......+....+.+-.+
T Consensus 122 ~~---~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~g~pDG~ 189 (246)
T PF08450_consen 122 PD---GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN--------RRVFIDFPGGPGYPDGL 189 (246)
T ss_dssp TT---SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE--------EEEEEE-SSSSCEEEEE
T ss_pred CC---Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceee--------eeeEEEcCCCCcCCCcc
Confidence 52 33 333333445668999999998775 666777787777643111 000 01111222223458899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
++..+|+..++....+.|.++|.. |+.+..+.
T Consensus 190 ~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 190 AVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp EEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred eEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence 999999988887789999999987 88877664
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.81 E-value=0.00065 Score=71.58 Aligned_cols=184 Identities=10% Similarity=0.037 Sum_probs=121.8
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
++..++-|+....+-.+|+.+.+..+...+.. ..+.-++. +++ ++.+|...|+|.+-|.+ +.+.++++..|+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~--s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRY--NNR--NLFCGDTRGTVFLRDPN--SFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEEe--cCc--EEEeecccceEEeecCC--cCceeeeeeccc
Confidence 45567777777778889998877766665432 23554443 334 88999999999999998 999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEcC---------CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CE
Q 010302 86 GPVKVMRYNPVFDTVISADD---------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQ 155 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~ 155 (513)
+.|.++.. .|++|++++. |..|++||++.++... -+.-+.+ ..=+.|+|.- ..
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--------------PI~~~~~-P~flrf~Psl~t~ 280 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--------------PIQFPYG-PQFLRFHPSLTTR 280 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--------------CcccccC-chhhhhcccccce
Confidence 99877654 8999999885 5668999998854311 1111212 1335677743 46
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
+++++..|...+-|..+-.- ++...+.+ ...........++++|+.++
T Consensus 281 ~~V~S~sGq~q~vd~~~lsN----------------P~~~~~~v----------------~p~~s~i~~fDiSsn~~ala 328 (1118)
T KOG1275|consen 281 LAVTSQSGQFQFVDTATLSN----------------PPAGVKMV----------------NPNGSGISAFDISSNGDALA 328 (1118)
T ss_pred EEEEecccceeeccccccCC----------------CccceeEE----------------ccCCCcceeEEecCCCceEE
Confidence 77778888888877322100 00000000 11112245667889999999
Q ss_pred Eccccc-eEEEE
Q 010302 236 YATLLG-IKIVN 246 (513)
Q Consensus 236 ~~s~~g-i~v~d 246 (513)
.+...| |.+|-
T Consensus 329 fgd~~g~v~~wa 340 (1118)
T KOG1275|consen 329 FGDHEGHVNLWA 340 (1118)
T ss_pred EecccCcEeeec
Confidence 997766 78886
No 341
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.80 E-value=0.00017 Score=75.77 Aligned_cols=146 Identities=16% Similarity=0.276 Sum_probs=108.3
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC---------CCeEEEEecCCCCC
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN---------SSFVHIYDARADSN 75 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~---------d~~I~iwd~~~~~~ 75 (513)
.+++++.+|..-|+|.+-|.++.+.++.+. .|.+.+..+... ++ ++++|+. |.-|+|||++ ..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--aHs~siSDfDv~--GN--lLitCG~S~R~~~l~~D~FvkVYDLR--mm 256 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFD--AHSGSISDFDVQ--GN--LLITCGYSMRRYNLAMDPFVKVYDLR--MM 256 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeee--ccccceeeeecc--CC--eEEEeecccccccccccchhhhhhhh--hh
Confidence 467899999999999999999999888866 888888766543 33 6776654 4558999998 66
Q ss_pred cceEEeecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 76 EPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
+.+.-+.-+.++ .-+.|+|. ...++.++..|...+.|..+..-|. ...+.+......+.++++|++|+
T Consensus 257 ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~----------~~~~~v~p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 257 RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP----------AGVKMVNPNGSGISAFDISSNGD 325 (1118)
T ss_pred hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc----------cceeEEccCCCcceeEEecCCCc
Confidence 666655555554 55778884 4577888889999998854432211 11222233445589999999999
Q ss_pred EEEEEeCCCcEEEEE
Q 010302 155 QFSITSPDRRIRVFW 169 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd 169 (513)
.||.|..+|.|.+|.
T Consensus 326 alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEecccCcEeeec
Confidence 999999999999996
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.00073 Score=68.51 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=93.7
Q ss_pred eEecCCCEEEEEe---CC-CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEE--EecCCCCC
Q 010302 2 QVSVDGLLCCSIS---ND-KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHI--YDARADSN 75 (513)
Q Consensus 2 ~~s~dg~~las~s---~D-~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~i--wd~~~~~~ 75 (513)
+|+|+++.++-.+ .. ..+.++|+.+++........ +.-...+|+|+++. ++++...|+...| .|+. ..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG~~-l~f~~~rdg~~~iy~~dl~--~~ 272 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDGSK-LAFSSSRDGSPDIYLMDLD--GK 272 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCCCE-EEEEECCCCCccEEEEcCC--CC
Confidence 5899998877764 22 35899999998877766643 55566789999975 5555566666554 5664 33
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEE-EcCCCcEEEe--cCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVIS-ADDKGIIEYW--SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s-~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
+ ...+....+.-+.-.|+|+|++++- .+..|.-.|| +.+.. . ...+......-..-.||||
T Consensus 273 ~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--------------~-~~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 273 N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--------------Q-VTRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--------------c-eeEeeccCCCCcCccCCCC
Confidence 3 4445544444457789999998854 4455655555 44331 1 1222222222226789999
Q ss_pred CCEEEEEeC-CCc--EEEEEcCCCe
Q 010302 153 GKQFSITSP-DRR--IRVFWFRTGK 174 (513)
Q Consensus 153 g~~l~s~s~-D~~--I~iwd~~tg~ 174 (513)
|++|+..+. +|. |.+.|+.++.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCC
Confidence 999987764 344 5555555544
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.005 Score=64.86 Aligned_cols=203 Identities=11% Similarity=0.120 Sum_probs=121.1
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCc-EEEEEEcCCCcceEEEEeCCCC-----eEEEEecCCC--
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGA-VEWVYKQGDVKAGLAISDRNSS-----FVHIYDARAD-- 73 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~-v~~v~~s~~~~~~~l~s~~~d~-----~I~iwd~~~~-- 73 (513)
+|++.+..+|.|+.||.|.+.+-. .+.+.- +..++.. +..+. ..+.+. ++++-+.|. .++||++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~--fqa~~~siv~~L~-~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRG--FQAYEQSIVQFLY-ILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeeh--heecchhhhhHhh-cccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 478899999999999999888753 122222 2344444 33332 223322 555544433 5899998632
Q ss_pred -C-CcceE--Eeec-----CCCCeEEEEEcCCCCEEEEEcCCCcEEEe--cCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 74 -S-NEPLI--SKKV-----HMGPVKVMRYNPVFDTVISADDKGIIEYW--SPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 74 -~-~~~i~--~~~~-----h~~~V~~l~~sp~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
+ ..+++ .+.. ...++++++.+.+-+.+|.|-.+|.|..+ |+-.. .+....-....+.
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD------------rgsr~~~~~~~~~ 172 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD------------RGSRQDYSHRGKE 172 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc------------cccceeeeccCCC
Confidence 1 23331 1222 35678999999999999999999999887 33110 0111111222456
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCC
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 221 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~ 221 (513)
+|+.+++..+++.++-......|.+|.+.... ....++.+ +.+
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~------------------------------------G~~ 216 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN------------------------------------GIS 216 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC------------------------------------Ccc
Confidence 79999999999874444556778888876322 13333322 223
Q ss_pred CCceEEcCCCCEEEEccccceEEEEcccCcEEEEeC
Q 010302 222 PSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 222 ~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g 257 (513)
..+.+|++...-++++....+.+++....+....++
T Consensus 217 lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 217 LNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 345556554443455555567888877666666665
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=0.003 Score=65.66 Aligned_cols=157 Identities=13% Similarity=0.011 Sum_probs=97.5
Q ss_pred EecCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC---------------------
Q 010302 3 VSVDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR--------------------- 60 (513)
Q Consensus 3 ~s~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~--------------------- 60 (513)
++|||+.+...+ ..+.+.+.|.++.+....+.+.. ....+.+++++. ++.+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~spdGk--~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDYDGK--YAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECCCCC--EEEEeccCcccCcceeeeccccCceEE
Confidence 567887765444 46788889999887777666543 233344555544 222221
Q ss_pred -------------------CCCeEEEEecCCCC-----CcceEEeecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCC
Q 010302 61 -------------------NSSFVHIYDARADS-----NEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPH 115 (513)
Q Consensus 61 -------------------~d~~I~iwd~~~~~-----~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~ 115 (513)
.++.|.+.|.. + .+.+..+... .....+.++|||++++.++ .+.++.+.|+.
T Consensus 275 vfni~~iea~vkdGK~~~V~gn~V~VID~~--t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 275 VFNIARIEEAVKAGKFKTIGGSKVPVVDGR--KAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred EEchHHHHHhhhCCCEEEECCCEEEEEECC--ccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 12457777776 3 3444555433 3457899999999986655 58999999997
Q ss_pred CCCCCCcceeeeec--CCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010302 116 TLQFPESEVSFRLK--SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 116 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t 172 (513)
+.+.. |+-+ ....+..-..-.......+|.++|+...|-..|..|-.||+.+
T Consensus 352 k~k~~-----~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDL-----FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhh-----hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 74320 1000 0111111111223456789999999888888999999999875
No 345
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.00034 Score=72.33 Aligned_cols=126 Identities=21% Similarity=0.150 Sum_probs=95.1
Q ss_pred EEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCC------------CEEEEEcCCCcE
Q 010302 42 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF------------DTVISADDKGII 109 (513)
Q Consensus 42 v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~------------~~l~s~s~dg~i 109 (513)
-..+.|++.| +++-|+. ..|.+-|.+ +.+.+..+..|+..|+.+.|.|.. -.|++++..|.|
T Consensus 18 ~~A~Dw~~~G---LiAygsh-slV~VVDs~--s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 18 RNAADWSPSG---LIAYGSH-SLVSVVDSR--SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccCccc---eEEEecC-ceEEEEehh--hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 4455666655 4555544 368888988 889999999999999999998732 146788888999
Q ss_pred EEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCeEEEEecccHHH
Q 010302 110 EYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP---DG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEV 185 (513)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg-~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~ 185 (513)
-+||... ...+..+..|..++..++|-| +. ..|+......++.+|+..+|+.+..++.....
T Consensus 92 il~d~~~--------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 92 ILVDFVL--------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI 157 (1062)
T ss_pred EEEEehh--------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence 9999866 344566777888899999976 44 46667777899999999999998877654444
Q ss_pred HH
Q 010302 186 AQ 187 (513)
Q Consensus 186 i~ 187 (513)
+.
T Consensus 158 Ls 159 (1062)
T KOG1912|consen 158 LS 159 (1062)
T ss_pred ee
Confidence 33
No 346
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.66 E-value=0.00024 Score=64.32 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=60.7
Q ss_pred cEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCC
Q 010302 41 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~ 116 (513)
.+..++.+|..+. +++.|+.||.+-+||.+.. ..+...+..|+.+++.+-|+| ++..|+++++||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQH-LVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCccccc-EEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3667777776554 7888899999999999833 345556679999999999999 789999999999999998864
No 347
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0043 Score=59.77 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=70.8
Q ss_pred EEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCC-C
Q 010302 19 VKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-F 97 (513)
Q Consensus 19 v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~-~ 97 (513)
|+..+..+++... -+..+...|..++|+|..+. ++..++.+..|+|.|++ +...+..+..| ..+++++|.-+ .
T Consensus 175 v~~l~~~~fkssq--~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dle--t~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ--ILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLE--TSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhh--cccccchhhhhhccCccccc-eeeeeccCceEEEEecc--cceeeeheecc-CCceeeeeccCCc
Confidence 3444444444332 23455667889999998775 67777889999999998 77777777777 78999999975 5
Q ss_pred CEEEEEcCCCcEEEecCCCCC
Q 010302 98 DTVISADDKGIIEYWSPHTLQ 118 (513)
Q Consensus 98 ~~l~s~s~dg~i~iwd~~~~~ 118 (513)
+++..|...|.|.++|++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccCceEEEEEccCCC
Confidence 677888899999999998743
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.031 Score=56.87 Aligned_cols=235 Identities=14% Similarity=0.132 Sum_probs=123.3
Q ss_pred eEecCCCEEEEEeCC-----------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec
Q 010302 2 QVSVDGLLCCSISND-----------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA 70 (513)
Q Consensus 2 ~~s~dg~~las~s~D-----------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~ 70 (513)
+.+|.|-.+|...++ ..|+||+.. |+.+..+.++. +.+-.+.|+.+.. ++.-..||.+++||+
T Consensus 35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVYDL 108 (410)
T ss_pred EEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC--CCEEEEEECCCCe---EEEEEcCCEEEEEeC
Confidence 556777777776544 148888875 56666666554 7899999987543 333347899999998
Q ss_pred CCCCCcceEEe-------ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEe-cCCCC-------CCCCc------------c
Q 010302 71 RADSNEPLISK-------KVHMGPVKVMRYNPVFDTVISADDKGIIEYW-SPHTL-------QFPES------------E 123 (513)
Q Consensus 71 ~~~~~~~i~~~-------~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw-d~~~~-------~~~~~------------~ 123 (513)
. ++....+ .-....+....+..+|-.+++. ++.+.+. +.... +.|.. .
T Consensus 109 ~---G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i 183 (410)
T PF04841_consen 109 F---GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVI 183 (410)
T ss_pred C---CceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccc
Confidence 5 2221111 1111212222222244222222 2222222 11100 11100 0
Q ss_pred eeee--------ecCCccccccccC-------CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccc-HHHHH
Q 010302 124 VSFR--------LKSDTNLFEILKS-------KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES-LEVAQ 187 (513)
Q Consensus 124 ~~~~--------~~~~~~~~~~~~~-------~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~-~~~i~ 187 (513)
..++ ...+..+..+..+ .+++..|++||+|+++|.-..+|.+.+.+..-.+.+..++-. .....
T Consensus 184 ~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~ 263 (410)
T PF04841_consen 184 PLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPK 263 (410)
T ss_pred eEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCc
Confidence 0111 1122223322222 257999999999999999999999999876656666555543 11233
Q ss_pred HHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeC
Q 010302 188 DLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g 257 (513)
.+.|.++... .+..+.++.-- +.....+.|.-++..++..-.+|+||+.-.+-+.++.+.
T Consensus 264 ~~~WCG~dav---------~l~~~~~l~lv-g~~~~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 264 QMAWCGNDAV---------VLSWEDELLLV-GPDGDSISFWYDGPVILVSEIDGVRIITSTSHEFLQRVP 323 (410)
T ss_pred EEEEECCCcE---------EEEeCCEEEEE-CCCCCceEEeccCceEEeccCCceEEEeCCceEEEEECC
Confidence 4444443111 11112221111 122234556555666677777888888777766666653
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.054 Score=54.62 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=137.1
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-CCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-NSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~iwd~~~~~~~~i 78 (513)
++++++|. ..++...+..|.+.|..+.+........ .....+.++++++..+++-.. .++++.+.|.. +.+.+
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~--t~~~~ 153 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA--TNKVT 153 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCC--CCeEE
Confidence 35677776 4555556789999998877766665533 256677888888765544443 47888888886 77777
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
........+ ..++++|+|+.++.+. .++.+.+.|....... . .. ......-......+.++|+|+++.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~------~---~~-~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV------R---GS-VGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee------c---cc-cccccccCCCCceEEECCCCCEEE
Confidence 776544455 8999999999665554 7889999987653210 0 00 000112223456799999999765
Q ss_pred EEeCC---CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 158 ITSPD---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 158 s~s~D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
..... +.+...|..++.....--. .... ....+..+|+|+++
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~----------------------------------~~~~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLP----------------------------------VGSG-APRGVAVDPAGKAA 267 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEeccc----------------------------------cccC-CCCceeECCCCCEE
Confidence 54432 5888888888777553100 0111 34567899999988
Q ss_pred EEccc--cceEEEEcccCcEEEEeC
Q 010302 235 IYATL--LGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 235 i~~s~--~gi~v~d~~t~~~v~~~g 257 (513)
..... ..+.+.|..+.++...+.
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeec
Confidence 77643 358888998888887764
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.51 E-value=0.013 Score=59.76 Aligned_cols=134 Identities=18% Similarity=0.170 Sum_probs=72.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEE-ecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIY-DARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw-d~~~~~~~~i~ 79 (513)
|+++|+|++++.++ ||...|+.....+... . +......|.+.+. +++-. ...+|.|+ +. +.+...
T Consensus 38 ls~npngr~v~V~g-~geY~iyt~~~~r~k~--~-----G~g~~~vw~~~n~--yAv~~-~~~~I~I~kn~---~~~~~k 103 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--F-----GSGLSFVWSSRNR--YAVLE-SSSTIKIYKNF---KNEVVK 103 (443)
T ss_dssp EEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--E-----EE-SEEEE-TSSE--EEEE--TTS-EEEEETT---EE-TT-
T ss_pred EEECCCCCEEEEEc-CCEEEEEEccCCcccc--c-----CceeEEEEecCcc--EEEEE-CCCeEEEEEcC---ccccce
Confidence 46899999999855 7788888854433322 2 3445567777444 44444 36789986 44 233333
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.++.. ..+..+-. |.+|+..+.+ .|.+||..+.+ .+..+.- ..|..+.||++|.+++..
T Consensus 104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~--------------~i~~i~v--~~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK--------------LIRRIDV--SAVKYVIWSDDGELVALV 162 (443)
T ss_dssp ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT----------------EEEEESS---E-EEEEE-TTSSEEEEE
T ss_pred EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc--------------eeeEEec--CCCcEEEEECCCCEEEEE
Confidence 33321 23444432 7777777655 79999997733 3433332 238899999999999988
Q ss_pred eCCCcEEEEEc
Q 010302 160 SPDRRIRVFWF 170 (513)
Q Consensus 160 s~D~~I~iwd~ 170 (513)
+.+ .+.|++.
T Consensus 163 t~~-~i~il~~ 172 (443)
T PF04053_consen 163 TKD-SIYILKY 172 (443)
T ss_dssp -S--SEEEEEE
T ss_pred eCC-eEEEEEe
Confidence 744 6666653
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.50 E-value=0.07 Score=48.88 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=124.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
|++++.|...+.++..+.++|.....+.....-+ + .....+++. ++..++.|++.+..|.+ +..++...+....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk-~-~a~~d~~~g--lIycgshd~~~yalD~~--~~~cVykskcgG~ 136 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK-V-RAQCDFDGG--LIYCGSHDGNFYALDPK--TYGCVYKSKCGGG 136 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhc-c-ceEEcCCCc--eEEEecCCCcEEEeccc--ccceEEecccCCc
Confidence 6677788888888888888886665554321111 1 112234444 88899999999999998 8888888775555
Q ss_pred CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccC--CcceEE--EEEcCCCCEEEEEeCC
Q 010302 87 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS--KTTVSA--IEVSPDGKQFSITSPD 162 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~--v~~spdg~~l~s~s~D 162 (513)
...+-+.+|-...|..+...|.+.--...++. ..++..| .+++.+ ++. +..+..++-|
T Consensus 137 ~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~---------------~~~~w~~~~~~PiF~splcv---~~sv~i~~Vd 198 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAITAGAVLAVTKNPYS---------------STEFWAATRFGPIFASPLCV---GSSVIITTVD 198 (354)
T ss_pred eeccceecCCCceEEEEeccceEEEEccCCCC---------------cceehhhhcCCccccCceec---cceEEEEEec
Confidence 55556667733344444445554433333211 1111111 122211 111 2233334455
Q ss_pred CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCC-CC-CceEEcCCCCEEEEcccc
Q 010302 163 RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA-PP-SNAIFDESSNFLIYATLL 240 (513)
Q Consensus 163 ~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~-~~-~~i~fd~~g~~li~~s~~ 240 (513)
|.+.-++ .+|+.+..+...- +++.- +... +. ..+.+-..+-|.......
T Consensus 199 G~l~~f~-~sG~qvwr~~t~G-----------pIf~~-----------------Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ 249 (354)
T KOG4649|consen 199 GVLTSFD-ESGRQVWRPATKG-----------PIFME-----------------PCESRPSCQQISLENENCFCAPLPIA 249 (354)
T ss_pred cEEEEEc-CCCcEEEeecCCC-----------ceecc-----------------cccCCCcceEEEEecCCeEEEecccc
Confidence 6555555 4555444332110 01100 0000 11 234455556666656666
Q ss_pred ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 010302 241 GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 315 (513)
Q Consensus 241 gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~ 315 (513)
|--+|..++|...+++-. + ++||- +.. .+.+.|+|+.-++.|+|+.|.
T Consensus 250 ghL~w~~~~g~t~~vy~~-p-~l~F~-~h~------------------------~~~S~~~ll~~~s~dgkv~il 297 (354)
T KOG4649|consen 250 GHLLWATQSGTTLHVYLS-P-KLRFD-LHS------------------------PGISYPKLLRRSSGDGKVMIL 297 (354)
T ss_pred ceEEEEecCCcEEEEEeC-c-cccee-ccC------------------------CCCcchhhhhhhcCCCcEEEE
Confidence 888999999977777632 2 23221 111 112558889999999999877
No 352
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.44 E-value=0.0049 Score=67.32 Aligned_cols=159 Identities=9% Similarity=0.130 Sum_probs=93.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEc--------------------CCC----------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRL--------------------PFI---------------------- 38 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l--------------------~~~---------------------- 38 (513)
++||||++.+|-...+.++.+- ..+++++....+ .++
T Consensus 115 aswS~Dee~l~liT~~~tll~m-T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 115 ASWSPDEELLALITGRQTLLFM-TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred EeecCCCcEEEEEeCCcEEEEE-eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchh
Confidence 4799999999999888787553 332222221111 000
Q ss_pred -CCcEEEEEEcCCCcceEEEE-----eCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEc---CCCcE
Q 010302 39 -PGAVEWVYKQGDVKAGLAIS-----DRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD---DKGII 109 (513)
Q Consensus 39 -~~~v~~v~~s~~~~~~~l~s-----~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s---~dg~i 109 (513)
..+-..|+|..+++ +++. ....+.|+|||-. +..-.+-......=.+++|-|.|.++++-. .|+.|
T Consensus 194 ~~~~~~~IsWRgDg~--~fAVs~~~~~~~~RkirV~drE---g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 194 QDDHKTSISWRGDGE--YFAVSFVESETGTRKIRVYDRE---GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred hccCCceEEEccCCc--EEEEEEEeccCCceeEEEeccc---chhhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence 11233588888887 4433 2223789999974 222221112233346899999999988754 34567
Q ss_pred EEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE---EeCCCcEEEEEcCCCeEE
Q 010302 110 EYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI---TSPDRRIRVFWFRTGKLR 176 (513)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s---~s~D~~I~iwd~~tg~~~ 176 (513)
.++.-+-... +.-...+......+..++|+.++..||+ ......|++|-+.+....
T Consensus 269 vffErNGL~h-----------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 269 VFFERNGLRH-----------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred EEEecCCccc-----------cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 7775432111 1111112223334889999999999986 334556999998886653
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.44 E-value=0.0012 Score=66.90 Aligned_cols=90 Identities=9% Similarity=0.130 Sum_probs=66.7
Q ss_pred EEEEccCCceeEE--EEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCC
Q 010302 20 KIYDVVNYDMMLM--IRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF 97 (513)
Q Consensus 20 ~iwd~~~~~~~~~--~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~ 97 (513)
.+|++...++... ..+ ..+..+.+++++|+.+ .++.|..||.|.+||.. .+ +..+....-..+.++|+|+|
T Consensus 239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~--~~--~t~~~ka~~~P~~iaWHp~g 311 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSPSED--KLVLGCEDGSIILYDTT--RG--VTLLAKAEFIPTLIAWHPDG 311 (545)
T ss_pred EEEEeecCceeEEEEEEE-ecCCcceEEecCcccc--eEEEEecCCeEEEEEcC--CC--eeeeeeecccceEEEEcCCC
Confidence 3566655443222 222 2456788889999888 88889999999999986 22 23333445667899999999
Q ss_pred CEEEEEcCCCcEEEecCCC
Q 010302 98 DTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 98 ~~l~s~s~dg~i~iwd~~~ 116 (513)
..+++|+..|.+.+||+.-
T Consensus 312 ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cEEEEEcCCceEEEEEeec
Confidence 9999999999999999743
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.41 E-value=0.069 Score=51.64 Aligned_cols=252 Identities=12% Similarity=0.006 Sum_probs=134.5
Q ss_pred eEecCCCEEEEEeC----------CCcEEEEEccCCceeEEEEcCCCCC-----cEEEEEEcCCCcceEEEEeCCCCeEE
Q 010302 2 QVSVDGLLCCSISN----------DKSVKIYDVVNYDMMLMIRLPFIPG-----AVEWVYKQGDVKAGLAISDRNSSFVH 66 (513)
Q Consensus 2 ~~s~dg~~las~s~----------D~~v~iwd~~~~~~~~~~~l~~~~~-----~v~~v~~s~~~~~~~l~s~~~d~~I~ 66 (513)
.+||||+.+.+++. .-.|.+||..+......+.++..+. .......+.+++.+++.-.+-...|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 57899999887642 4479999999998888888764311 12234566666655555555555677
Q ss_pred EEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc-eE
Q 010302 67 IYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT-VS 145 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 145 (513)
|-|+. ..+.+..+.. ..+..+-=+ ..+.|.+.+.||.+.-..+.....+.. ..+. .+..-+.+ ..
T Consensus 122 VVDl~--~~kvv~ei~~--PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~-------~~t~--~F~~~~dp~f~ 187 (342)
T PF06433_consen 122 VVDLA--AKKVVGEIDT--PGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQ-------KSTK--VFDPDDDPLFE 187 (342)
T ss_dssp EEETT--TTEEEEEEEG--TSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEE-------EEEE--ESSTTTS-B-S
T ss_pred EEECC--CCceeeeecC--CCEEEEEec-CCCceEEEecCCceEEEEECCCCCEeE-------eecc--ccCCCCccccc
Confidence 77776 5666665542 122222212 224577888899988777654221100 0001 11111222 22
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCC
Q 010302 146 AIEVSPDGKQFSITSPDRRIRVFWFRTGKLR--RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 146 ~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
.-+++..+..++--+.+|.|+--|+...... ..+.--...=..-.|. ...+-
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr--------------------------PGG~Q 241 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR--------------------------PGGWQ 241 (342)
T ss_dssp --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE--------------------------E-SSS
T ss_pred ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC--------------------------Cccee
Confidence 3445555555565788998888888765432 1111100000000111 12333
Q ss_pred ceEEcCCCCEEEEc-------ccc----ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccccccc
Q 010302 224 NAIFDESSNFLIYA-------TLL----GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 292 (513)
Q Consensus 224 ~i~fd~~g~~li~~-------s~~----gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
.+++++..+.|..- +.. .|.++|+.+++.++.+.-.. . ...+++-|
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~--~~Si~Vsq-------------------- 298 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-P--IDSIAVSQ-------------------- 298 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-E--ESEEEEES--------------------
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-c--cceEEEcc--------------------
Confidence 56676544433322 111 38888999999998885322 1 11222212
Q ss_pred CCCCCCCCeEEEeeecCceEEEEecCCC
Q 010302 293 SKEPFSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 293 ~~~~~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
...|.|++....++.+++|.-.+.
T Consensus 299 ----d~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 299 ----DDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp ----SSS-EEEEEETTTTEEEEEETTT-
T ss_pred ----CCCcEEEEEcCCCCeEEEEeCcCC
Confidence 367888888788899999987654
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.34 E-value=6.8e-05 Score=75.84 Aligned_cols=152 Identities=21% Similarity=0.213 Sum_probs=96.5
Q ss_pred eEec-CCCEEEEEe----CCCcEEEEEccCC--ceeEEEEcCC-CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC
Q 010302 2 QVSV-DGLLCCSIS----NDKSVKIYDVVNY--DMMLMIRLPF-IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD 73 (513)
Q Consensus 2 ~~s~-dg~~las~s----~D~~v~iwd~~~~--~~~~~~~l~~-~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~ 73 (513)
+|++ |-.+||.|- .|..+.|||+.++ .+.....+.. .......++|..+.+ ++.+|.....++++|++..
T Consensus 109 AwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 109 AWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred ccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhh
Confidence 4554 556677663 3778999999876 2222222222 223445666665555 8888888889999999721
Q ss_pred CCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecC-CCCCCCCcceeeeecCCccccccccCCc----ceEEE
Q 010302 74 SNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSP-HTLQFPESEVSFRLKSDTNLFEILKSKT----TVSAI 147 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~v 147 (513)
+...-.-.+..+..+...| .++++++-+ |+.|.+||. +.. ..++..+...+. .+..+
T Consensus 187 ---~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni-------------enpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 187 ---LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI-------------ENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred ---hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh-------------ccHHHHHhhCCCCcccceeeE
Confidence 1111112344677788889 888888777 999999994 332 233433333333 48899
Q ss_pred EEcCCCC-EEEEEe-CCCcEEEEEcCC
Q 010302 148 EVSPDGK-QFSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 148 ~~spdg~-~l~s~s-~D~~I~iwd~~t 172 (513)
+|+|... .+++.+ ..++|+++|+..
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred EeccCCcchhhhhccCcceEEEecccc
Confidence 9999554 444545 467899999753
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.33 E-value=0.00068 Score=42.12 Aligned_cols=38 Identities=37% Similarity=0.587 Sum_probs=33.8
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEec
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWS 113 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd 113 (513)
+++..+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778899999999999999999999999999995
No 357
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.015 Score=61.37 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=97.8
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCCC-eEEEEEcCCCCEEEEEcCCCc-----EEEecCCCCCCCCcceeeee
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMGP-VKVMRYNPVFDTVISADDKGI-----IEYWSPHTLQFPESEVSFRL 128 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~-V~~l~~sp~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~ 128 (513)
.++-|+.+|.|.+.+- +.+.++.++.+... |..+....+.++|++.++|+. ++||+++..+....
T Consensus 37 ~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s------ 107 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS------ 107 (933)
T ss_pred eEEEeeccccEEEecc---cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC------
Confidence 7888889999888875 45666888877777 444433344478888887654 89999876432110
Q ss_pred cCCccc--cccc-----cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccc
Q 010302 129 KSDTNL--FEIL-----KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 201 (513)
Q Consensus 129 ~~~~~~--~~~~-----~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 201 (513)
..++ ..+. ....++.+++.|.+-+.+|+|-.+|.|..+. |..++-
T Consensus 108 --P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~---GDi~RD----------------------- 159 (933)
T KOG2114|consen 108 --PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK---GDILRD----------------------- 159 (933)
T ss_pred --cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc---Ccchhc-----------------------
Confidence 1122 0111 1345688999999999999999999998874 111110
Q ss_pred ccccceeeeeeeccccCCCCCCceEEcCCCCEE-EEccccceEEEEcccCcE
Q 010302 202 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL-IYATLLGIKIVNLHTNKV 252 (513)
Q Consensus 202 ~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l-i~~s~~gi~v~d~~t~~~ 252 (513)
-|.|. .+......+++.+++-.+++-+ ..++...|.++.+. |+.
T Consensus 160 --rgsr~----~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~ 204 (933)
T KOG2114|consen 160 --RGSRQ----DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRT 204 (933)
T ss_pred --cccce----eeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCC
Confidence 01111 1223445677888888888874 44455568888886 444
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.25 E-value=0.059 Score=51.63 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=118.8
Q ss_pred eEecCCCEEEEEeCCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+....++.|+.|..+| +.+++.. ..+...... ...+..+...+.-+-+++++ |+.+.++++. .......
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs---d~~l~~~~L~--~l~~~~~ 71 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS---DGQLYVYDLD--SLEPVST 71 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc---CCccEEEEch--hhccccc
Confidence 3445788999999888 8999983 333333322 22388888887766444443 3889999986 3222220
Q ss_pred --------------eecCCCCeEEEE--EcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCC-ccccccccCCcc
Q 010302 81 --------------KKVHMGPVKVMR--YNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD-TNLFEILKSKTT 143 (513)
Q Consensus 81 --------------~~~h~~~V~~l~--~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 143 (513)
.......+...+ -...+...+.......|.+|....... .. ....++ .-...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~----------~f~~~~ke~-~lp~~ 140 (275)
T PF00780_consen 72 SAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN----------SFSKLLKEI-SLPDP 140 (275)
T ss_pred cccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc----------cccceeEEE-EcCCC
Confidence 011223344444 112333333333444788875533110 01 122222 23467
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHH--HHHHhcCCC--Cccccccc-------cccceeeeee
Q 010302 144 VSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV--AQDLQRSDA--PLYRLEAI-------DFGRRMAVEK 212 (513)
Q Consensus 144 v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~--i~~~~~~~~--~~~~l~~~-------~~~~r~~~e~ 212 (513)
+.+++|. ++.++.|.. ....+.|+.++.....++..... +........ .++.+... +.+-.+..+-
T Consensus 141 ~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G 217 (275)
T PF00780_consen 141 PSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNG 217 (275)
T ss_pred cEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCC
Confidence 8899997 666776664 44778899987765544322111 000000111 11111111 1111110000
Q ss_pred ecc----ccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCC
Q 010302 213 EIE----KTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGK 258 (513)
Q Consensus 213 e~~----~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~ 258 (513)
+.. -.....+..+++. ..||+.-...+|.|+++.++++++++..
T Consensus 218 ~~~r~~~i~W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 218 EPSRKSTIQWSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CcCcccEEEcCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 000 0112233455553 3577777778899999999999999864
No 359
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.24 E-value=0.13 Score=52.15 Aligned_cols=157 Identities=10% Similarity=0.107 Sum_probs=86.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
+..+..++.++.+..+|.++|+.+-...+.. .+. .+|--....++.+..++.+.-+|.. +++.+........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~---ssP~v~~~~v~v~~~~g~l~ald~~--tG~~~W~~~~~~~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EAL---SRPVVSDGLVLVHTSNGMLQALNES--DGAVKWTVNLDVP 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC---cee---cCCEEECCEEEEECCCCEEEEEEcc--CCCEeeeecCCCC
Confidence 4456667789999999999999877665432 111 1111001144456678889999987 7777776653211
Q ss_pred CeEE-EEEcC--CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC--CCCEEEEEeC
Q 010302 87 PVKV-MRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP--DGKQFSITSP 161 (513)
Q Consensus 87 ~V~~-l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~s~s~ 161 (513)
.... ..-+| .+..++.++.++.+..+|..+++. .|..+........ .......+.-+| .+..+..++.
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~-----~W~~~~~~~~~~~--~~~~~~~~~~sP~v~~~~vy~~~~ 264 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL-----IWQQRISQPTGAT--EIDRLVDVDTTPVVVGGVVYALAY 264 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh-----hheeccccCCCcc--chhcccccCCCcEEECCEEEEEEc
Confidence 1000 00112 234566677788888888877553 2222111110000 000001111122 3455666778
Q ss_pred CCcEEEEEcCCCeEEEE
Q 010302 162 DRRIRVFWFRTGKLRRV 178 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~ 178 (513)
++.+..+|..+|+.+-.
T Consensus 265 ~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 265 NGNLVALDLRSGQIVWK 281 (394)
T ss_pred CCeEEEEECCCCCEEEe
Confidence 99999999999987543
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.22 E-value=0.041 Score=59.49 Aligned_cols=144 Identities=13% Similarity=0.013 Sum_probs=92.5
Q ss_pred CEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc-----ceEEEEeCCCCeEEEEecCCCCCcceEE-
Q 010302 8 LLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK-----AGLAISDRNSSFVHIYDARADSNEPLIS- 80 (513)
Q Consensus 8 ~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~-----~~~l~s~~~d~~I~iwd~~~~~~~~i~~- 80 (513)
++|+.- .....|+-.|+++|+.+....+... ..+.. +.|+.+ ..-.+.|-.++.+.-||.+....+++..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDD-IPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCC-cceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 444433 3467899999999999888875422 22333 333221 1123445567789999998544333321
Q ss_pred ee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 81 KK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
.. ......+|++-+.+| +||.|+.+|.||+||--. ......+.+-..+|.+|+.+.||++++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g--------------~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG--------------KRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc--------------hhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 11 233456777766666 789999999999998311 1223344566789999999999999886
Q ss_pred EeCCCcEEEEEc
Q 010302 159 TSPDRRIRVFWF 170 (513)
Q Consensus 159 ~s~D~~I~iwd~ 170 (513)
.| +..|.+++.
T Consensus 636 Tc-~tyLlLi~t 646 (794)
T PF08553_consen 636 TC-KTYLLLIDT 646 (794)
T ss_pred ee-cceEEEEEE
Confidence 66 556667664
No 361
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.18 E-value=0.082 Score=53.69 Aligned_cols=150 Identities=12% Similarity=0.073 Sum_probs=83.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
+..++.+..++.+..+|.++|+.+-............. ..+|.-....++.+..++.+..+|.. +++.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~--~G~~~W~~~~~~~ 236 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSAVLME--QGQLIWQQRISQP 236 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEEEEcc--CChhhheeccccC
Confidence 34455677789999999999998776654311000000 01111000134445667888888886 6655544321100
Q ss_pred -------CeEEEEEcC--CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 87 -------PVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 87 -------~V~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
....+.-+| .+..++.++.++.+..+|+.+++. .|..+.+ ....+.. ++..+.
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-----~W~~~~~-----------~~~~~~~--~~~~vy 298 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-----VWKREYG-----------SVNDFAV--DGGRIY 298 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-----EEeecCC-----------CccCcEE--ECCEEE
Confidence 011111223 355676777889999999887542 2322111 0111222 556677
Q ss_pred EEeCCCcEEEEEcCCCeEEE
Q 010302 158 ITSPDRRIRVFWFRTGKLRR 177 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~ 177 (513)
.++.++.+..+|..+|+.+-
T Consensus 299 ~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred EEcCCCeEEEEECCCCcEEE
Confidence 77889999999999998754
No 362
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.15 E-value=0.17 Score=55.97 Aligned_cols=153 Identities=11% Similarity=0.082 Sum_probs=89.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec--CCCCCcce-
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA--RADSNEPL- 78 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~--~~~~~~~i- 78 (513)
.|-.++.-++.+..+|.|.+-|.++......-. ...+|..++|+|+.+-+.++++ ..++.+-+- ..-..+++
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~Dee~l~liT~--~~tll~mT~~f~~i~E~~L~ 149 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPDEELLALITG--RQTLLFMTKDFEPIAEKPLD 149 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCCCcEEEEEeC--CcEEEEEeccccchhccccc
Confidence 344567777778888999988888766544333 3478999999999995555554 345544321 00000111
Q ss_pred ------------------EEeecC---------------------CCCeEEEEEcCCCCEEEEEc----CC-CcEEEecC
Q 010302 79 ------------------ISKKVH---------------------MGPVKVMRYNPVFDTVISAD----DK-GIIEYWSP 114 (513)
Q Consensus 79 ------------------~~~~~h---------------------~~~V~~l~~sp~~~~l~s~s----~d-g~i~iwd~ 114 (513)
..+.+. .+.=+++.|--||+++++.. .+ ..|++||-
T Consensus 150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr 229 (1265)
T KOG1920|consen 150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR 229 (1265)
T ss_pred cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence 011100 11124589999999998732 23 78999987
Q ss_pred CCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCeE
Q 010302 115 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS---PDRRIRVFWFRTGKL 175 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s---~D~~I~iwd~~tg~~ 175 (513)
+ +.+... .+ ...+.-.+++|-|.|..+++.- .|+.|.+|. ++|..
T Consensus 230 E-g~Lns~--------se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~ 277 (1265)
T KOG1920|consen 230 E-GALNST--------SE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLR 277 (1265)
T ss_pred c-chhhcc--------cC------cccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCcc
Confidence 5 222100 11 1122235799999999998754 466787775 34433
No 363
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.12 E-value=0.00088 Score=41.58 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=31.6
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010302 134 LFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 169 (513)
Q Consensus 134 ~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd 169 (513)
...+..|...+.+++|++++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445556888999999999999999999999999996
No 364
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.0011 Score=69.44 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=83.2
Q ss_pred eEecCCCEEEEEe----CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 2 QVSVDGLLCCSIS----NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 2 ~~s~dg~~las~s----~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
+|+|...++|.++ ..|+|.|| ..+|++..... .|-++.+++|+|..- ++++|-.-+.+.+|..+ +.+.
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt---~P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~--~~e~ 93 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT---YPVHATSLCWHPEEF--VLAQGWEMGVSDVQKTN--TTET 93 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc---cceehhhhccChHHH--HHhhccccceeEEEecC--Ccee
Confidence 6889999999887 36889988 44566544443 344566788888655 89999999999999885 4444
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecC
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 114 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~ 114 (513)
......|..+|..+.|||+|..++++..-|.+.+|..
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 4444589999999999999999999999999999954
No 365
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.0092 Score=61.65 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=86.1
Q ss_pred CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC
Q 010302 38 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 115 (513)
Q Consensus 38 ~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~ 115 (513)
++..+..-++....+ +++-|+.-|.+.+|+-. . ...+.++ +-...+..+..|++..+++.|+..|.|.++.+.
T Consensus 32 ~~~~v~lTc~dst~~--~l~~GsS~G~lyl~~R~--~-~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE--YLAMGSSAGSVYLYNRH--T-GEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCc--eEEEecccceEEEEecC--c-hhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 344555555555555 88888889999999874 2 2333333 345566777888999899999999999999876
Q ss_pred CCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010302 116 TLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t 172 (513)
....+...+ +... ..|+..|++++|++|+..+.+|...|+|..-.+.+
T Consensus 107 ~~~p~~~~~---------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDY---------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCccee---------eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 633322211 1111 12788999999999999999999999998877766
No 366
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.86 E-value=0.78 Score=48.00 Aligned_cols=165 Identities=14% Similarity=0.046 Sum_probs=89.8
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC---------CCCeEEEEecCCCCCcce
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR---------NSSFVHIYDARADSNEPL 78 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~---------~d~~I~iwd~~~~~~~~i 78 (513)
..+..++.|+.|..+|.++++.+-...+..+...-..+..+|.-...+++.++ .++.+.-+|.. +++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~--TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE--TGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC--CCcee
Confidence 56777888999999999999988776654321000111111111111233332 35678888887 77776
Q ss_pred EEeecCCC--------------------Ce-EEEEEcCCCCEEEEEcCCC------------------cEEEecCCCCCC
Q 010302 79 ISKKVHMG--------------------PV-KVMRYNPVFDTVISADDKG------------------IIEYWSPHTLQF 119 (513)
Q Consensus 79 ~~~~~h~~--------------------~V-~~l~~sp~~~~l~s~s~dg------------------~i~iwd~~~~~~ 119 (513)
-..+.... .+ .+.++.+.+..++.++.++ .+.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 66543111 01 1234455566777777665 466667766553
Q ss_pred CCcceeeeecCCcc-ccccccCCcce-EEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 120 PESEVSFRLKSDTN-LFEILKSKTTV-SAIEVSPDGK---QFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 120 ~~~~~~~~~~~~~~-~~~~~~~~~~v-~~v~~spdg~---~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
.|..+.... ...+.....++ ..+. .-+|. .++.++.+|.+...|.++|+.+-..+
T Consensus 269 -----~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 269 -----KWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred -----EEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 344322110 00011111111 1111 11343 56778889999999999999987664
No 367
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0012 Score=69.45 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=95.7
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
+..+++..|....+|++|+-+.++|+.|+..|.|+++++.++ ........|.+.|+.+.-|.||..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------------~~e~s~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------------SMEESVNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--------------cccccccccccccccccccCCcce
Confidence 455667788899999999999999999999999999999774 345566789999999999999998
Q ss_pred EEEEeC-CC-cEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 156 FSITSP-DR-RIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 156 l~s~s~-D~-~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
+++.+. .. -..+|++.+ +...++|++. ..+.|+.+-+
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----------------------------------------~~vkFsn~~q 1197 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDED----------------------------------------KAVKFSNSLQ 1197 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccccc----------------------------------------ceeehhhhHH
Confidence 776653 33 467898765 4445555431 2445666656
Q ss_pred EEEEccc-cceEEEEcccCcEEEEe
Q 010302 233 FLIYATL-LGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 233 ~li~~s~-~gi~v~d~~t~~~v~~~ 256 (513)
+-+.++- +...+||+.|+..+.++
T Consensus 1198 ~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1198 FRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred HHHhcccccceEEEecccCcHHHHh
Confidence 5555543 35789999999988874
No 368
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0042 Score=59.90 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=70.6
Q ss_pred EEEEecCCCCCcceEEeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 65 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
+++.+.. +.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++. .....+..+ ..
T Consensus 175 v~~l~~~--~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------------~~vssy~a~-~~ 237 (463)
T KOG1645|consen 175 VQKLESH--DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------------CVVSSYIAY-NQ 237 (463)
T ss_pred eEEeccC--CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--------------eeeeheecc-CC
Confidence 4555544 5555566668889999999999766 7889999999999999872 334444445 78
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCe
Q 010302 144 VSAIEVSPDGKQ-FSITSPDRRIRVFWFRTGK 174 (513)
Q Consensus 144 v~~v~~spdg~~-l~s~s~D~~I~iwd~~tg~ 174 (513)
+++++|.-|... +..|-..|.|.|||++.-+
T Consensus 238 ~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 238 IWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 999999987765 4556679999999998643
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0057 Score=62.36 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=62.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceE-EEEEcCCCCEEEEEeCCCc
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS-AIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~spdg~~l~s~s~D~~ 164 (513)
..+.-+.|+|.-.++|.+..+|.+-+.-+.. +.+-++.-|...+. ++||.|||+.||.|-.||+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT 85 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------------ceeEeccCCCCccceeeeecCCCCEEEEEecCCe
Confidence 4577899999999999999999776664432 22344443444455 9999999999999999999
Q ss_pred EEEEEcCCCeEEEEe
Q 010302 165 IRVFWFRTGKLRRVY 179 (513)
Q Consensus 165 I~iwd~~tg~~~~~~ 179 (513)
|++.|+.+|..+...
T Consensus 86 I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSF 100 (665)
T ss_pred EEEEEccCCCceecc
Confidence 999999998887763
No 370
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.69 E-value=0.0086 Score=61.18 Aligned_cols=146 Identities=12% Similarity=-0.000 Sum_probs=95.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC----CCCeEEEEecCCCCCcceEE--
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR----NSSFVHIYDARADSNEPLIS-- 80 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~----~d~~I~iwd~~~~~~~~i~~-- 80 (513)
...++.|..+|.|-+-.+....-......+.+...|..++|.+-... ++++|- .|..+.|||+...-..+...
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn-~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTN-HLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHH-HHHhhhhhhcccCCccceecccccCCCccccc
Confidence 35678888899999887764332222233456678889999875333 455542 36679999987221122221
Q ss_pred eec-CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEE
Q 010302 81 KKV-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSI 158 (513)
Q Consensus 81 ~~~-h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s 158 (513)
+.. ......+++|-.+.+++++|.....+.++|++... .....-.+..+..+.++| .+.++++
T Consensus 149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~---------------~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL---------------DSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccccCccccccccCcchhhcccccchhhhhhhhhhh---------------hhhhhhhhhhcccceecCCCCCceec
Confidence 111 33445688898888999999999999999997411 111111223567788999 8889886
Q ss_pred EeCCCcEEEEE
Q 010302 159 TSPDRRIRVFW 169 (513)
Q Consensus 159 ~s~D~~I~iwd 169 (513)
.. |+.|.+||
T Consensus 214 ~~-dg~iAiwD 223 (783)
T KOG1008|consen 214 NS-DGDIAIWD 223 (783)
T ss_pred cc-cCceeecc
Confidence 55 99999999
No 371
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.68 E-value=0.032 Score=58.20 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=66.3
Q ss_pred CCcEEEEEccC-----CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc------------ce
Q 010302 16 DKSVKIYDVVN-----YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE------------PL 78 (513)
Q Consensus 16 D~~v~iwd~~~-----~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~------------~i 78 (513)
+++|.+.|..+ .+....+. .+.....+.++|+++. +++++..+.++.|.|+. +.+ .+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~--k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVR--KLDDLFDGKIKPRDAVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCE-EEEeCCCCCcEEEEECh--hhhhhhhccCCccceEE
Confidence 35678888776 33444333 3456778889999984 56677779999999996 333 23
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
.......++ ...+|.++|+...|..-|..|-.|++.+
T Consensus 369 aevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333344 4578999999889999999999999854
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.01 Score=60.62 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=63.1
Q ss_pred CCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeE-EEEEcCCCCEEEEEcCCCcEEEecCCCC
Q 010302 39 PGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVK-VMRYNPVFDTVISADDKGIIEYWSPHTL 117 (513)
Q Consensus 39 ~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~-~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 117 (513)
+..+..+-|+|.-. +++.+..+|.+.+..+ +.+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|+.++
T Consensus 20 ~~~i~~~ewnP~~d--LiA~~t~~gelli~R~---n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD--LIATRTEKGELLIHRL---NWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCccc--hhheeccCCcEEEEEe---ccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 35577788888777 8899999999999888 4677788876666777 9999999999999999999999999874
Q ss_pred C
Q 010302 118 Q 118 (513)
Q Consensus 118 ~ 118 (513)
.
T Consensus 95 ~ 95 (665)
T KOG4640|consen 95 G 95 (665)
T ss_pred C
Confidence 3
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.62 E-value=0.18 Score=48.81 Aligned_cols=171 Identities=18% Similarity=0.131 Sum_probs=93.2
Q ss_pred eEecCCCEEEEEe--CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSVDGLLCCSIS--NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~s--~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|.||+++.... ---+|.|-|+...+.+..+.++ .|..+.-+.. . -+.+-+.||.+.-..+. ..++...
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----GC~~iyP~~~--~-~F~~lC~DGsl~~v~Ld-~~Gk~~~ 172 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----GCWLIYPSGN--R-GFSMLCGDGSLLTVTLD-ADGKEAQ 172 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----SEEEEEEEET--T-EEEEEETTSCEEEEEET-STSSEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----CEEEEEecCC--C-ceEEEecCCceEEEEEC-CCCCEeE
Confidence 5788999887764 4568999999998888877744 3444433322 2 23344467777777664 2333332
Q ss_pred Eee----cCCCCeE-EEEEcCCCCEEEEEcCCCcEEEecCCCCC------------------------------------
Q 010302 80 SKK----VHMGPVK-VMRYNPVFDTVISADDKGIIEYWSPHTLQ------------------------------------ 118 (513)
Q Consensus 80 ~~~----~h~~~V~-~l~~sp~~~~l~s~s~dg~i~iwd~~~~~------------------------------------ 118 (513)
+.. ....++. .-++...+..++-.+.+|.|+--|+....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 211 1111111 22223333333334444444333221110
Q ss_pred -------------CC-CcceeeeecCCccccccccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCeEEEEecc
Q 010302 119 -------------FP-ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITS-PDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 119 -------------~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~s~s-~D~~I~iwd~~tg~~~~~~~~ 181 (513)
-| .+++.++.++++.+..+.- ..++.+|+++.|.+ +|.+.+ .++.+.+||..+|+.++.+++
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 01 1245566667777666653 23577899999887 554444 589999999999999998764
No 374
>PRK00969 hypothetical protein; Provisional
Probab=96.57 E-value=0.013 Score=58.69 Aligned_cols=171 Identities=23% Similarity=0.342 Sum_probs=95.5
Q ss_pred CCCeEEEeeecCceEE-EEecCCCCCCccc---------CCCcCccCCCCCccccccccccCCCccCCC-CCEEEEEeCC
Q 010302 298 SDPTLLCCAFKRHRIY-LFSRREPEEPEDA---------TKGRDIFNEKPPPDELLAVSDIGNSVTTSL-PDNVILHTTM 366 (513)
Q Consensus 298 ~d~~l~~s~~~~~~i~-i~~~~~~~~~~~~---------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~v~~~t~~ 366 (513)
-|=.|=|+|++...-| ||+++.-...+.. .+.|.+-...-..+...+..|.-+|..... ...--+.|..
T Consensus 117 ~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~D~I~sIEPVie~~e~~~~~~TtDl~~~L 196 (508)
T PRK00969 117 WDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDGDRIISIEPVIEWKETSDYLVTTDLSTVL 196 (508)
T ss_pred ccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCCCeEEEEeeeEEehhcccceEEecCCccc
Confidence 3555667777777555 8887753222211 223334444444445555555444443322 1111122222
Q ss_pred --e-----EEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCC
Q 010302 367 --G-----DIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHD 439 (513)
Q Consensus 367 --G-----~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 439 (513)
| .+.+||.++ +|.+++.|+.+.+.|.+.= -+...-| |. ....-|...+.|. +...
T Consensus 197 EdG~~IfTy~eve~~~~-~p~s~EH~la~~~~G~f~V---d~~tstf-I~----------d~~L~g~~~p~En---~~~R 258 (508)
T PRK00969 197 EDGMKIFTYVEVELDPG-APKSVEHFLALLEDGTFEV---DFETSTF-IA----------DDRLQGLKIPEEN---FEPR 258 (508)
T ss_pred cCCCEEEEEEEEEEcCC-CCchHHHHHHHHhCCeEEE---eeeecce-Ee----------eccccCccCCccc---cCcc
Confidence 2 367788764 9999999999999985320 0110001 11 0111133344443 2223
Q ss_pred CceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHh
Q 010302 440 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIE 489 (513)
Q Consensus 440 ~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~ 489 (513)
++|+|.+.+.|.+. -..||.-.+.+ ..-.|+|+|+|+.|||+++--+
T Consensus 259 ~~GtVTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 259 RRGTVTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred ccceEEEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence 56999999987543 25899887665 4456999999999999986443
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.46 E-value=0.72 Score=46.54 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=36.3
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccH
Q 010302 141 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESL 183 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~ 183 (513)
...+.+++.+|++++.|+...=|.|.++|+.++..++.+++-.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 3457889999999988887677999999999999998887633
No 376
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.44 E-value=0.022 Score=57.05 Aligned_cols=170 Identities=19% Similarity=0.343 Sum_probs=93.4
Q ss_pred CCeEEEeeecCceEE-EEecCCCCCCccc----------CCCcCccCCCCCccccccccccCCCccCCC-CCEEEEEeCC
Q 010302 299 DPTLLCCAFKRHRIY-LFSRREPEEPEDA----------TKGRDIFNEKPPPDELLAVSDIGNSVTTSL-PDNVILHTTM 366 (513)
Q Consensus 299 d~~l~~s~~~~~~i~-i~~~~~~~~~~~~----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~v~~~t~~ 366 (513)
|=.|-|+|++...=| ||+++.-...+.. -+.|.+-...-..+...+..|.-+|..... ...--+.|..
T Consensus 114 DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~D~I~sIEPvie~~~~~~~~~TtDl~~~L 193 (503)
T TIGR03268 114 DVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDGDQIISIEPVIERKEIVDSATTTDLSTVL 193 (503)
T ss_pred cEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCCCeEEEEeeeeeehhcccceEEecCCccc
Confidence 555667777776554 7887642222211 122333333344444445444444433222 1111112221
Q ss_pred --e-----EEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCC
Q 010302 367 --G-----DIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHD 439 (513)
Q Consensus 367 --G-----~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 439 (513)
| .+.+||.+ .+|.+++.|+.+.+.|.+.= -+...-| |. ....-+...+.|. +...
T Consensus 194 EdG~~IfTy~evE~~~-~~p~s~EH~la~~~~G~~~V---d~~tsTf-i~----------d~~L~g~~~p~En---~~~R 255 (503)
T TIGR03268 194 EDGDRIFTYVEVELDP-NAPVSVEHFLALMEDGTFRV---DYRTSTF-IS----------DDSLRGLDKPEEN---IEKR 255 (503)
T ss_pred cCCCEEEEEEEEEEcC-CCChhHHHHHHHHhCCeEEE---eeeecce-Ee----------cccccCccCCccc---cCcc
Confidence 2 46778765 59999999999999885320 0110101 11 1111133344443 2233
Q ss_pred CceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHh
Q 010302 440 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIE 489 (513)
Q Consensus 440 ~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~ 489 (513)
++|+|.+.+.|.+. -..||.-.+.+ ..-.|+|+|+|+.|||+++--+
T Consensus 256 ~rGtVTVRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 256 RRGAVTVRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred cceeEEEEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 56999999987543 25899887665 4456999999999999986443
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.44 E-value=0.81 Score=42.86 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=74.3
Q ss_pred EEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec-CCCCeEEEEEcCCCCEEEEEcCCCcEEE
Q 010302 33 IRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV-HMGPVKVMRYNPVFDTVISADDKGIIEY 111 (513)
Q Consensus 33 ~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~-h~~~V~~l~~sp~~~~l~s~s~dg~i~i 111 (513)
..+++....+..+.|.|+... +++.....+.|..++. +++.++++.- .....-.|++.-++.++++--.++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~---~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSL---DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEET---T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred eECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcC---CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 345555567999999998665 5555566888887886 5778887762 2356788999877877776666888888
Q ss_pred ecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 112 WSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 112 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
+++........ .-+.+ .-.+.....++..+-.++|+|.++.|..+-...-.++|.+.
T Consensus 91 ~~~~~~~~~~~--~~~~~-~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 91 FTIDDDTTSLD--RADVQ-KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp EEE----TT----EEEEE-EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred EEEeccccccc--hhhce-EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 87733211000 00000 00000111345568899999998887777766666666654
No 378
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.033 Score=56.62 Aligned_cols=138 Identities=17% Similarity=0.104 Sum_probs=79.1
Q ss_pred eEecCCCEEEEEe-CCCc--EEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCe--EEEEecCCCCCc
Q 010302 2 QVSVDGLLCCSIS-NDKS--VKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSF--VHIYDARADSNE 76 (513)
Q Consensus 2 ~~s~dg~~las~s-~D~~--v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~--I~iwd~~~~~~~ 76 (513)
+|||||++||-++ .|+. |.+.|+.+..... +....+.-..-.|+|+++.++.+| +..|. |.+++.. +.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~---g~ 316 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLE---GS 316 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCC---CC
Confidence 6999999888776 4665 4555776655322 333334444778999999754444 44454 4444553 33
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcC-CCc--EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADD-KGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
....+..+...-..-.|+|+|++++..+. +|. |.+.|+.+. ... ....+......-+|.|+|
T Consensus 317 ~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~--------------~~~-~~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 317 QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG--------------GKI-RILTSTYLNESPSWAPNG 381 (425)
T ss_pred ceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC--------------CcE-EEccccccCCCCCcCCCC
Confidence 33444433333337889999999977664 343 444444331 111 111222233456788888
Q ss_pred CEEEEEeC
Q 010302 154 KQFSITSP 161 (513)
Q Consensus 154 ~~l~s~s~ 161 (513)
+.+...+.
T Consensus 382 ~~i~~~s~ 389 (425)
T COG0823 382 RMIMFSSG 389 (425)
T ss_pred ceEEEecc
Confidence 88775553
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.31 E-value=0.97 Score=42.36 Aligned_cols=159 Identities=17% Similarity=0.095 Sum_probs=96.4
Q ss_pred eEecCCCEEEEEeCCC--cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSVDGLLCCSISNDK--SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~s~D~--~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
.|..+|.++-|.+.-| .|+.+|+.+++......++.. .--..+.... .. +..-.-.++...+||.. +.+.+.
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d~-l~qLTWk~~~~f~yd~~--tl~~~~ 124 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--DK-LYQLTWKEGTGFVYDPN--TLKKIG 124 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--TE-EEEEESSSSEEEEEETT--TTEEEE
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--CE-EEEEEecCCeEEEEccc--cceEEE
Confidence 3557888888888654 799999999998888776532 1223333332 22 44444678899999997 778888
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEEEEcCCCCEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~l~ 157 (513)
++.-. ..=+.++ .+++.|+..+....+..+|+.+++.... +..... .-..++.+.|- +|...|
T Consensus 125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~-----------i~V~~~g~pv~~LNELE~i-~G~IyA 189 (264)
T PF05096_consen 125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT-----------IQVTDNGRPVSNLNELEYI-NGKIYA 189 (264)
T ss_dssp EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE-----------EE-EETTEE---EEEEEEE-TTEEEE
T ss_pred EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEE-----------EEEEECCEECCCcEeEEEE-cCEEEE
Confidence 77632 3335666 4677777777777899999988654211 111100 11234556664 666555
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecc
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
=.=....|...|..+|+....++-
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEh
Confidence 444566677779999999998874
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.18 E-value=0.44 Score=38.17 Aligned_cols=89 Identities=12% Similarity=0.184 Sum_probs=59.4
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccc
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
-|+.|+.|..|++|+- .+.+..+. ....|++++-... ..|+.+-.+|+|-+|+-.. .+
T Consensus 17 eLlvGs~D~~IRvf~~----~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----------------Rl 74 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKG----DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----------------RL 74 (111)
T ss_pred eEEEecCCcEEEEEeC----CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----------------ee
Confidence 7888899999999974 36677765 4467788877655 6788999999999996522 12
Q ss_pred cccccCCcceEEEEEcC---CCC-EEEEEeCCCcEE
Q 010302 135 FEILKSKTTVSAIEVSP---DGK-QFSITSPDRRIR 166 (513)
Q Consensus 135 ~~~~~~~~~v~~v~~sp---dg~-~l~s~s~D~~I~ 166 (513)
-..+ .+..+.++++.. ||. -|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 222355555543 332 678887888764
No 381
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.17 E-value=0.28 Score=50.17 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=79.2
Q ss_pred CcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEe-cCCCCC
Q 010302 40 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW-SPHTLQ 118 (513)
Q Consensus 40 ~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw-d~~~~~ 118 (513)
.....++++|.++ +++. ..++...|+... ..+... .+.-...+|.+ .+.+++-....+|.|+ +...
T Consensus 33 ~~p~~ls~npngr--~v~V-~g~geY~iyt~~--~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~-- 99 (443)
T PF04053_consen 33 IYPQSLSHNPNGR--FVLV-CGDGEYEIYTAL--AWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKN-- 99 (443)
T ss_dssp S--SEEEE-TTSS--EEEE-EETTEEEEEETT--TTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE--
T ss_pred cCCeeEEECCCCC--EEEE-EcCCEEEEEEcc--CCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCcc--
Confidence 3467788899888 4444 346677787743 222221 23345788998 4457777778889996 4422
Q ss_pred CCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccc
Q 010302 119 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 198 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 198 (513)
.....+.- ...+..+-. |..|...+.+ .|.+||+.+++.++.++-
T Consensus 100 -------------~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v----------------- 144 (443)
T PF04053_consen 100 -------------EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV----------------- 144 (443)
T ss_dssp --------------TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----------------
T ss_pred -------------ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----------------
Confidence 11111111 112333322 8887776544 899999999999988753
Q ss_pred cccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccC
Q 010302 199 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTN 250 (513)
Q Consensus 199 l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~ 250 (513)
.++..+.|+++|++++..+.+.+.|++....
T Consensus 145 ---------------------~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 145 ---------------------SAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp ----------------------E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred ---------------------CCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 1135789999999999999999998887654
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.14 E-value=0.17 Score=54.86 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=92.6
Q ss_pred eEEEEeCCCCeEEEEecCCCCCcceEEeecCCCC-eEEEEEcC-----CCCEEEEEcCCCcEEEecCCCCCCCCcceeee
Q 010302 54 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGP-VKVMRYNP-----VFDTVISADDKGIIEYWSPHTLQFPESEVSFR 127 (513)
Q Consensus 54 ~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~-V~~l~~sp-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 127 (513)
.++........++-.|+. .++.+..+..|... |..++-.. .....+.|-.+..+..||++-.. .+. ..
T Consensus 495 mil~~~~~~~~ly~mDLe--~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~--v~- 568 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLE--RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKL--VD- 568 (794)
T ss_pred eEeecCCCCCceEEEecC--CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-Cce--ee-
Confidence 345555566788888887 89999999977644 55553221 12334556667778899997522 000 00
Q ss_pred ecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccce
Q 010302 128 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 207 (513)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r 207 (513)
...+. ...+....|++-+.+| +||+||.+|.||+|| +.|+.-++. +
T Consensus 569 ----~~~k~-Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~-------------------l-------- 614 (794)
T PF08553_consen 569 ----SQSKQ-YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTA-------------------L-------- 614 (794)
T ss_pred ----ccccc-cccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhc-------------------C--------
Confidence 00111 1234457788777777 678899999999998 333211110 0
Q ss_pred eeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcc
Q 010302 208 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLH 248 (513)
Q Consensus 208 ~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~ 248 (513)
...+.++..+..+.+|++|+..+...+-+++..
T Consensus 615 --------p~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 615 --------PGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred --------CCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 112346678889999999999998888888763
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.10 E-value=1.9 Score=43.93 Aligned_cols=113 Identities=11% Similarity=-0.072 Sum_probs=66.4
Q ss_pred eEecCCCEEEEE-eCC----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC---------CCeEEE
Q 010302 2 QVSVDGLLCCSI-SND----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN---------SSFVHI 67 (513)
Q Consensus 2 ~~s~dg~~las~-s~D----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~---------d~~I~i 67 (513)
++||||++||-+ +.. .+++++|+++++.+.... .. .....+.|.++++.++...-.. ...|+.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-EN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 689999999866 333 459999999987654321 11 1112389999988655555443 334777
Q ss_pred EecCCCCCcceEEeecCCCC--eEEEEEcCCCCEEEEEc-CCC---cEEEecCCCC
Q 010302 68 YDARADSNEPLISKKVHMGP--VKVMRYNPVFDTVISAD-DKG---IIEYWSPHTL 117 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h~~~--V~~l~~sp~~~~l~s~s-~dg---~i~iwd~~~~ 117 (513)
|.+.....+-...+...... ...+..++++++++..+ ... .+.+.|+...
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 77752222222344433222 67888999999876433 222 3556677653
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.10 E-value=0.8 Score=41.60 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=101.8
Q ss_pred CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee-----cCCCCeE
Q 010302 15 NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-----VHMGPVK 89 (513)
Q Consensus 15 ~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-----~h~~~V~ 89 (513)
..+.|+-||.++.+..+ ..+++.+. ..++--...+.+.+.+.++..-.|.-||.........+++. .......
T Consensus 35 ~ag~v~r~D~~qn~v~r-a~ie~p~~-ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~N 112 (310)
T KOG4499|consen 35 EAGEVHRYDIEQNKVYR-AKIEGPPS-AGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLN 112 (310)
T ss_pred ccCceehhhhhhhheEE-EEEecCcc-eeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccc
Confidence 45666668887654432 23333322 11221122333446666666555666874322333333321 1133445
Q ss_pred EEEEcCCCCEEEEEcCC---------CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE-EE
Q 010302 90 VMRYNPVFDTVISADDK---------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS-IT 159 (513)
Q Consensus 90 ~l~~sp~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~-s~ 159 (513)
.-..+|+|++++-...| |.++.|-. +-.+..+...-.--+.++|+.+.+.+. +-
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~----------------~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA----------------GHQVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEecc----------------CCCceeeehhccCCccccccccCcEEEEEc
Confidence 56678999986543332 22333322 111222222223346788988877664 44
Q ss_pred eCCCcEEEEE--cCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 160 SPDRRIRVFW--FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 160 s~D~~I~iwd--~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
+.+.+|.-|| ..+|..... ..++.+ ++ .+..+..-+..++.|.+|++.+..
T Consensus 177 sln~~V~a~dyd~~tG~~snr---------------~~i~dl-----------rk-~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNR---------------KVIFDL-----------RK-SQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred cCceEEeeeecCCCcccccCc---------------ceeEEe-----------cc-CCCcCCCCCCcceEccCCcEEEEE
Confidence 5678887787 666654210 001111 00 011112233455668899976665
Q ss_pred cc-cceEEEEcccCcEEEEeC
Q 010302 238 TL-LGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 238 s~-~gi~v~d~~t~~~v~~~g 257 (513)
-. ..|..+|..||+++..+-
T Consensus 230 ~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEE
Confidence 44 459999999999998873
No 385
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.08 E-value=0.14 Score=51.12 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=90.2
Q ss_pred ecCCCEEEEEe---------CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 4 SVDGLLCCSIS---------NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 4 s~dg~~las~s---------~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
||||++++... ..+.+.|||+++++...... ....+....|||+++.+..+. ++.|.+++.. .
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~---~~nly~~~~~--~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVR---DNNLYLRDLA--T 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE---TTEEEEESST--T
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEe---cCceEEEECC--C
Confidence 79999988742 35678899999866543322 246788999999998544443 4679999875 3
Q ss_pred CcceEEee--cC----------------CCCeEEEEEcCCCCEEEEEcCC-CcEEEecCC---CC--CCCCc--------
Q 010302 75 NEPLISKK--VH----------------MGPVKVMRYNPVFDTVISADDK-GIIEYWSPH---TL--QFPES-------- 122 (513)
Q Consensus 75 ~~~i~~~~--~h----------------~~~V~~l~~sp~~~~l~s~s~d-g~i~iwd~~---~~--~~~~~-------- 122 (513)
++. ..+. +. -..-.++-||||+++|+....| ..++.+.+- .. ..|..
T Consensus 73 ~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 73 GQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp SEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred CCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence 322 2222 20 1123568899999999776543 334433221 11 11111
Q ss_pred --------ceeeeecCCcccc-c----cccCCcceEEEEEcCCCCEEEE--EeCC---CcEEEEEcCCCeEEE
Q 010302 123 --------EVSFRLKSDTNLF-E----ILKSKTTVSAIEVSPDGKQFSI--TSPD---RRIRVFWFRTGKLRR 177 (513)
Q Consensus 123 --------~~~~~~~~~~~~~-~----~~~~~~~v~~v~~spdg~~l~s--~s~D---~~I~iwd~~tg~~~~ 177 (513)
...++.+.++... . +......+..+.|+++++.|+. .+.+ ..+.++|..++++..
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV 224 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence 2334444443211 1 1223456889999999984433 2333 235666776665533
No 386
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.015 Score=61.31 Aligned_cols=112 Identities=10% Similarity=0.066 Sum_probs=78.8
Q ss_pred EEEEEEcCCCcceEEE--EeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC
Q 010302 42 VEWVYKQGDVKAGLAI--SDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 119 (513)
Q Consensus 42 v~~v~~s~~~~~~~l~--s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 119 (513)
....+|+|...-+.++ |-...|.+.||-- ++++-+... ..-.+++++|+|..-.|++|-+-|.+.+|...+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad---tGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-- 91 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD---TGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-- 91 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec---CCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc--
Confidence 3445666665522222 2234677888743 555544332 1223567999999888999999999999977552
Q ss_pred CCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 120 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
+.......|+.++..+.|||+|..|+++..-|.+.+|...
T Consensus 92 ------------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 ------------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ------------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 2223344599999999999999999999999999999875
No 387
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.03 E-value=1.3 Score=44.72 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=104.2
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCC------CCCcEEEEEEc-----CCC-cceEEEEeCCCCeEEEEecCC-
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF------IPGAVEWVYKQ-----GDV-KAGLAISDRNSSFVHIYDARA- 72 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~------~~~~v~~v~~s-----~~~-~~~~l~s~~~d~~I~iwd~~~- 72 (513)
|=-++|.|..+|++.|.|++....+....+.. ....+..+.|+ .++ ....++.|.+.|.+.+|.+..
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 44589999999999999998777776655544 22345556554 222 234778888889999998742
Q ss_pred CCCcce----EEeecCCCCeEEEE-EcCC-C--------------------CEEEEEcCCCcEEEecCCCCCCCCcceee
Q 010302 73 DSNEPL----ISKKVHMGPVKVMR-YNPV-F--------------------DTVISADDKGIIEYWSPHTLQFPESEVSF 126 (513)
Q Consensus 73 ~~~~~i----~~~~~h~~~V~~l~-~sp~-~--------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 126 (513)
..+... .....+.++|..+. ++.+ | .+++.++ +..++++.+.+.+
T Consensus 176 ~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv~~~~~~k-------- 246 (395)
T PF08596_consen 176 SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRVFKPPKSK-------- 246 (395)
T ss_dssp GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT-----------
T ss_pred CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEEEeCCCCc--------
Confidence 122211 11224566666655 3322 1 1344444 5568888775522
Q ss_pred eecCCccccccccCCcceEEEEE-----cCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccc
Q 010302 127 RLKSDTNLFEILKSKTTVSAIEV-----SPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 201 (513)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~v~~-----spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 201 (513)
..+......-....+++ ...+..|++-..+|.|++|.+..-+.+..+.-.... +.
T Consensus 247 ------~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~--d~------------ 306 (395)
T PF08596_consen 247 ------GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL--DS------------ 306 (395)
T ss_dssp ------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----H------------
T ss_pred ------ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc--cc------------
Confidence 12222222122334444 235667888889999999999998887765421000 00
Q ss_pred ccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcc
Q 010302 202 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLH 248 (513)
Q Consensus 202 ~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~ 248 (513)
......+++++|..++..+...+.++.+-
T Consensus 307 ------------------~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 307 ------------------RRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp ------------------HHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred ------------------ccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 01124567999998888777776666553
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.95 E-value=0.21 Score=53.15 Aligned_cols=149 Identities=11% Similarity=0.008 Sum_probs=78.4
Q ss_pred CeEecCCCEEEEEe------CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC----------CCCe
Q 010302 1 MQVSVDGLLCCSIS------NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR----------NSSF 64 (513)
Q Consensus 1 v~~s~dg~~las~s------~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~----------~d~~ 64 (513)
.++||||+.+|... .|+.-.||-...+.....+. .+ .......|++++..+..++.. ..+.
T Consensus 355 paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 355 AALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred ceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cC--CCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence 36899999988776 25444555433222222222 11 236778899987743333211 2233
Q ss_pred EEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEE---ecCCCCCCCCcceeeeecCCccccccc-cC
Q 010302 65 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEY---WSPHTLQFPESEVSFRLKSDTNLFEIL-KS 140 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 140 (513)
+.+.++. .++... .....|..+.|||||..++... ++.|.+ -....+.. . -.....+. .-
T Consensus 432 l~~~~vd--~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~-------~---l~~~~~l~~~l 495 (591)
T PRK13616 432 LARTPVD--ASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY-------A---LTNPREVGPGL 495 (591)
T ss_pred EEEEecc--Cchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce-------e---ecccEEeeccc
Confidence 4333443 222221 2345799999999999887655 466655 22222110 0 01111122 23
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010302 141 KTTVSAIEVSPDGKQFSITSPDRRIRVFW 169 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~D~~I~iwd 169 (513)
...+.++.|.+++.++ ++..++.-.+|.
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEE
Confidence 3346789999999855 445444444554
No 389
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=1.2 Score=44.90 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=105.3
Q ss_pred CeEecCCCEEEEEeC---CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISN---DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~---D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++++|+++.+..+.. ++++.+.|..+.+..........+ ..+.+.|++.. +.++...++.|.+.|.. ....
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~g~~-vyv~~~~~~~v~vi~~~--~~~v 194 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPDGNK-VYVTNSDDNTVSVIDTS--GNSV 194 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCCCCe-EEEEecCCCeEEEEeCC--Ccce
Confidence 478899977666654 689999999988887774432222 78889999885 34444678899999975 3322
Q ss_pred eE-----EeecCCCCeEEEEEcCCCCEEEEEcCC---CcEEEecCCCCCCCCcceeeeecCCccccc--cccCCcceEEE
Q 010302 78 LI-----SKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFE--ILKSKTTVSAI 147 (513)
Q Consensus 78 i~-----~~~~h~~~V~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v 147 (513)
.+ ....+.. -..+.++|+++.+...... +.+...|..+... ... ..... ....+
T Consensus 195 ~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v--------------~~~~~~~~~~-~~~~v 258 (381)
T COG3391 195 VRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV--------------TATDLPVGSG-APRGV 258 (381)
T ss_pred eccccccccccCCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceE--------------EEeccccccC-CCCce
Confidence 21 1222333 3578899999976554433 5788887766321 111 11112 45678
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEec
Q 010302 148 EVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 148 ~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~~ 180 (513)
.++|+|+.+.+.. ..+.+.+.|..+.+......
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 9999999887764 45889999998888776654
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.79 E-value=0.029 Score=37.44 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=29.8
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q 010302 141 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~ 175 (513)
...|.+++|||....||.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346899999999999999999999999998 5554
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.18 Score=50.88 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=91.2
Q ss_pred EEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEE-----EEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 10 CCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLA-----ISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 10 las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l-----~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
|.++.....++-.|++.|+.+....+. ..|..+.+.|+....-+ +.|-.|+.|.=||.+......+...+.|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~---~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFE---DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeecc---CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 344455667888899999988877744 22666666665543222 3345577899999874333233333333
Q ss_pred C----CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 85 M----GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 85 ~----~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+ ....|.+-..+ .+++.||.+|.||+||- .+ ......+.+...+|..|..+.||++|+..|
T Consensus 426 qy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~-------------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IG-------------RRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred ccccccccceeeecCC-ceEEEeecCCcEEeehh-hh-------------hhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 3 23445544434 48999999999999976 21 122334566778899999999999988666
Q ss_pred CCCcEEEEEc
Q 010302 161 PDRRIRVFWF 170 (513)
Q Consensus 161 ~D~~I~iwd~ 170 (513)
+..+.+-+.
T Consensus 491 -~tyLlLi~t 499 (644)
T KOG2395|consen 491 -KTYLLLIDT 499 (644)
T ss_pred -ccEEEEEEE
Confidence 445555443
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.77 E-value=2.1 Score=41.58 Aligned_cols=208 Identities=14% Similarity=0.071 Sum_probs=105.0
Q ss_pred EecCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 3 VSVDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 3 ~s~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
|.++...|.-+. ..+.|.-|+..+++.. .+. .+..+.......... .++++.. -+.+++.. ++..+..+
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~---~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~--~~~~~t~~ 101 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFP---SPGGFSSGALIDAGG--RLIACEH--GVRLLDPD--TGGKITLL 101 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE---CCCCcccceeecCCC--eEEEEcc--ccEEEecc--CCceeEEe
Confidence 455665444443 5677888888765432 222 223333333222222 4444433 35666664 33332222
Q ss_pred e----c-CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeec-CCccccccccCCcceEEEEEcCCCCE
Q 010302 82 K----V-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK-SDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 82 ~----~-h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
. + ....-..+...|+|.+-++.... ++..........-.|.+. .+.....+..+-...+.++||||++.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-----~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-----FDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCc-----cccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCE
Confidence 1 1 11334567777887765543331 110000000001122222 12333334444556788999999987
Q ss_pred EEEEeC-CCcEEEEEcCC--CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 156 FSITSP-DRRIRVFWFRT--GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 156 l~s~s~-D~~I~iwd~~t--g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
|..+-. .+.|.-|++.. +.. .+++..+... .....+..++.|.+|+
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~----------------------------~~~~~~~~~~---~~~G~PDG~~vDadG~ 225 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPI----------------------------GGRRGFVDFD---EEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCcc----------------------------CCcceEEEcc---CCCCCCCceEEeCCCC
Confidence 766553 46777776643 111 0111111111 1224556789999999
Q ss_pred EEEEcccc--ceEEEEcccCcEEEEeC
Q 010302 233 FLIYATLL--GIKIVNLHTNKVSRILG 257 (513)
Q Consensus 233 ~li~~s~~--gi~v~d~~t~~~v~~~g 257 (513)
+.+.+-.. .|.+|+.. |+++..+.
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEE
Confidence 88755544 69999998 88887764
No 393
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.60 E-value=0.56 Score=43.19 Aligned_cols=105 Identities=10% Similarity=-0.072 Sum_probs=73.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
..+++.||..+.+..-|..+|+++-...+. .++.+-+.. -++ +++-|...+.+++.+.+ ++..+..+..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgd--fVV~GCy~g~lYfl~~~--tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGD--FVVLGCYSGGLYFLCVK--TGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECC--EEEEEEccCcEEEEEec--chhheeeeeehhh
Confidence 356777888888888999888877654433 233322222 233 67778888899999998 7777776653322
Q ss_pred CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC
Q 010302 87 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 119 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 119 (513)
--......+++.++..++.|++.+..|.++..+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 223345678999999999999999999987443
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=0.043 Score=49.39 Aligned_cols=106 Identities=8% Similarity=-0.053 Sum_probs=64.6
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC-
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM- 85 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~- 85 (513)
+..++.|+.||.|.+|...-......+.........+.+.-..++. +.+++..++.|+.|+++ ..+.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~--p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIK--PNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccc--eeEEeccCCceeeeccc--cCceeeeeccccC
Confidence 4567788899999999886322111111011111122222222223 77888899999999997 556665555666
Q ss_pred CCeEEEEEcCCCCEEEEE--cCCCcEEEecCCC
Q 010302 86 GPVKVMRYNPVFDTVISA--DDKGIIEYWSPHT 116 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~--s~dg~i~iwd~~~ 116 (513)
.++..+..+..++.+.++ |.|..++.|++..
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 566666666666667666 7777777777644
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.46 E-value=1 Score=36.07 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=59.3
Q ss_pred cCC-CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec
Q 010302 5 VDG-LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 5 ~dg-~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
-|| +.|+.||.|..||+|+-. +.+..+. ....+..+.....+ .++.+..+|+|-+|+-. ..+..++.
T Consensus 12 ~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~---e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~~----~RlWRiKS 79 (111)
T PF14783_consen 12 GDGENELLVGSDDFEIRVFKGD--EIVAEIT---ETDKVTSLCSLGGG---RFAYALANGTVGVYDRS----QRLWRIKS 79 (111)
T ss_pred CCCcceEEEecCCcEEEEEeCC--cEEEEEe---cccceEEEEEcCCC---EEEEEecCCEEEEEeCc----ceeeeecc
Confidence 344 578889999999999875 4555554 22456666555443 56777789999999752 33334443
Q ss_pred CCCCeEEEEEcC-CC---CEEEEEcCCCcEE
Q 010302 84 HMGPVKVMRYNP-VF---DTVISADDKGIIE 110 (513)
Q Consensus 84 h~~~V~~l~~sp-~~---~~l~s~s~dg~i~ 110 (513)
.. .+.++.+.. ++ .-|++|-.+|.|.
T Consensus 80 K~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 KN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 356665543 33 3678888888764
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=2.4 Score=40.05 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=99.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI- 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~- 79 (513)
+.|+|+.+.|.+......--||=..+|+.+..+.+.+... ...+.+...+. ++++.-.+..+.++.+..++.....
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~--fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQ--FVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCE--EEEEehhcceEEEEEEcCCccEEecc
Confidence 5799999988888887777788788899999988876432 34445555555 8888888899988877532211100
Q ss_pred --Eee----cC-CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccC-------CcceE
Q 010302 80 --SKK----VH-MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS-------KTTVS 145 (513)
Q Consensus 80 --~~~----~h-~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~ 145 (513)
.+. .+ ....-.++|.|..+.|..+-+..-+.|+.+.... .. -.+.....+ -..+.
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~--~~---------l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP--SS---------LSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC--cc---------cccccccCcccccceEeeccc
Confidence 111 22 4567789999999999999988888888654211 00 000111111 12367
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEEc
Q 010302 146 AIEVSPD-GKQFSITSPDRRIRVFWF 170 (513)
Q Consensus 146 ~v~~spd-g~~l~s~s~D~~I~iwd~ 170 (513)
++.|++. +..|+-+..++.+.-.|.
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEec
Confidence 7888874 445555556666666664
No 397
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.38 E-value=1.7 Score=45.48 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=89.6
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCC--CCcEE----EEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFI--PGAVE----WVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~--~~~v~----~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
+..+..++.++.|...|.++++.+-....... ..... .+... ++. .++.++.++.|.-+|.+ +++.+-.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~--TG~~~W~ 135 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAE--TGKQVWK 135 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECC--CCCEeee
Confidence 34556677789999999999987766554321 00000 00110 112 45556678999999987 7887776
Q ss_pred eecCCCC--eEEEEEcC--CCCEEEEEc---------CCCcEEEecCCCCCCCCcceeeeecCCcc-ccccc--------
Q 010302 81 KKVHMGP--VKVMRYNP--VFDTVISAD---------DKGIIEYWSPHTLQFPESEVSFRLKSDTN-LFEIL-------- 138 (513)
Q Consensus 81 ~~~h~~~--V~~l~~sp--~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~-------- 138 (513)
....... -..+.-+| .+..++.++ .++.+..+|..+++. .|..+.... ...+.
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~-----~W~~~~~~~~~~~~~~~~~~~~~ 210 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL-----LWRFYTTEPDPNAFPTWGPDRQM 210 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce-----eeEeeccCCCcCCCCCCCCCcce
Confidence 6532210 00111122 224454443 356778888888664 444433211 00110
Q ss_pred -cCC-cce-EEEEEcCCCCEEEEEeCCC------------------cEEEEEcCCCeEEEEec
Q 010302 139 -KSK-TTV-SAIEVSPDGKQFSITSPDR------------------RIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 139 -~~~-~~v-~~v~~spdg~~l~s~s~D~------------------~I~iwd~~tg~~~~~~~ 180 (513)
.+. ..+ ...++.+.+..+..++.++ .|.-+|.++|+.+-.++
T Consensus 211 ~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 211 WGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred ecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 011 111 1345555566677676554 68888999999877654
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.22 E-value=1.3 Score=47.27 Aligned_cols=150 Identities=18% Similarity=0.162 Sum_probs=80.5
Q ss_pred CCCEEEEEeCC------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC------CeEEEEecCCC
Q 010302 6 DGLLCCSISND------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS------SFVHIYDARAD 73 (513)
Q Consensus 6 dg~~las~s~D------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d------~~I~iwd~~~~ 73 (513)
.+.+++.||.+ .++..||..++.......+..... -..+.... + .+.+.|+.| .++..||.+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~-~--~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLN-G--KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEEC-C--EEEEEccccCCCcccceEEEecCCCC
Confidence 35677778776 467888988775544444332222 22222222 2 267777777 45778888744
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCc-----EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEE
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI-----IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIE 148 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (513)
++..+..+............ +|...++|+.||. +..||+.+.+. +.+..........-.+.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W------------~~va~m~~~r~~~gv~~ 425 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW------------TPVAPMLTRRSGHGVAV 425 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcc------------cccCCCCcceeeeEEEE
Confidence 44444333333322222222 7788899998864 66777766432 11111111111122223
Q ss_pred EcCCCCEEEEEeCCC------cEEEEEcCCCeE
Q 010302 149 VSPDGKQFSITSPDR------RIRVFWFRTGKL 175 (513)
Q Consensus 149 ~spdg~~l~s~s~D~------~I~iwd~~tg~~ 175 (513)
+ +|+..++|+.++ ++..||..+.+.
T Consensus 426 ~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 426 L--GGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred E--CCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 3 788888888553 456666666554
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=3.1 Score=39.11 Aligned_cols=116 Identities=11% Similarity=0.193 Sum_probs=70.4
Q ss_pred CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCC--eEEEEEcCCCCEEEEEc
Q 010302 27 YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP--VKVMRYNPVFDTVISAD 104 (513)
Q Consensus 27 ~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~--V~~l~~sp~~~~l~s~s 104 (513)
++.+....+ +.....+.++|.....+++.---.....++|.+ ..+...++...++. --.=.|||||.+|...-
T Consensus 58 Gk~v~~~~l---paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~--~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATE 132 (366)
T COG3490 58 GKIVFATAL---PARGHGIAFHPALPRAVAFARRPGTFAMVFDPN--GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATE 132 (366)
T ss_pred Cceeeeeec---ccccCCeecCCCCcceEEEEecCCceEEEECCC--CCcCcEEEecccCceeecccccCCCCcEEEeec
Confidence 455544443 355667777777664333332222335678886 44443333211111 11235899999997654
Q ss_pred CC-----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 105 DK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 105 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
.| |.|-|||.+.. -..+-++..|.-....+.|.+||+.|+.+.
T Consensus 133 ndfd~~rGViGvYd~r~~-------------fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 133 NDFDPNRGVIGVYDAREG-------------FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCCCceEEEEecccc-------------cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 43 67889988642 134556777877788999999999998753
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=1.4 Score=44.75 Aligned_cols=144 Identities=9% Similarity=0.093 Sum_probs=90.8
Q ss_pred cceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCC--EE-----EEEcCCCcEEEecCCCCCCCCcce
Q 010302 52 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD--TV-----ISADDKGIIEYWSPHTLQFPESEV 124 (513)
Q Consensus 52 ~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~--~l-----~s~s~dg~i~iwd~~~~~~~~~~~ 124 (513)
..+++.++.....++-.|+. .++.+..++-|.. |.-+.+.|+.+ .+ +.|-.|..|.-||++-...
T Consensus 345 snlil~~~~~~~~l~klDIE--~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----- 416 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIE--RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----- 416 (644)
T ss_pred cceEeeCCCCcCcceeeecc--cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-----
Confidence 34567777777778888887 8999999987766 77777888653 22 2344566788899874221
Q ss_pred eeeecCCcccccccc----CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccc
Q 010302 125 SFRLKSDTNLFEILK----SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 200 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~----~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~ 200 (513)
..+....+ .+....|.+-..+| ++|+||.+|.||+||- .++..++.-.
T Consensus 417 -------~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlP------------------- 468 (644)
T KOG2395|consen 417 -------NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALP------------------- 468 (644)
T ss_pred -------ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccc-------------------
Confidence 11111111 12234555555455 7788999999999995 4443222110
Q ss_pred cccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEc
Q 010302 201 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNL 247 (513)
Q Consensus 201 ~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~ 247 (513)
..+.++..+-.+-+|++|+..+...+-+.+.
T Consensus 469 ----------------gLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 469 ----------------GLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ----------------ccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 1123445666778999999888777666554
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.74 E-value=0.7 Score=46.21 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=67.9
Q ss_pred CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEE-EEeCCCCeEEEEec-CCCCCc--ceEEeecC-------
Q 010302 16 DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLA-ISDRNSSFVHIYDA-RADSNE--PLISKKVH------- 84 (513)
Q Consensus 16 D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l-~s~~~d~~I~iwd~-~~~~~~--~i~~~~~h------- 84 (513)
..++.+||+.+.+.++.+.+.........+.|..+.....- +.+.-..+|..|-- ..+..+ .+..+...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 46899999999999999998754445677888766554322 22223334544432 211111 12222110
Q ss_pred ----------CCCeEEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc-----cc--cCCcceEE
Q 010302 85 ----------MGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE-----IL--KSKTTVSA 146 (513)
Q Consensus 85 ----------~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~v~~ 146 (513)
..-|+.|..|.|.++| +++-.+|.++.||+.+...|+..-+ ...+..+.. .. .-.+.+.-
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gq--v~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQ--VFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEE--EE-BTTTT-B--TTS------S----
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeE--EEECcEeccCCCccccccccCCCCCe
Confidence 2347899999999988 6677899999999987665544211 111211111 11 12344567
Q ss_pred EEEcCCCCEEEE
Q 010302 147 IEVSPDGKQFSI 158 (513)
Q Consensus 147 v~~spdg~~l~s 158 (513)
+..|.||++|..
T Consensus 379 vqlS~DGkRlYv 390 (461)
T PF05694_consen 379 VQLSLDGKRLYV 390 (461)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEEccCCeEEEE
Confidence 888888887754
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.74 E-value=4.9 Score=39.90 Aligned_cols=168 Identities=14% Similarity=0.088 Sum_probs=71.6
Q ss_pred eEecCCCEEEEEeC-C--CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 2 QVSVDGLLCCSISN-D--KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 2 ~~s~dg~~las~s~-D--~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
+|.+||+.|+-+|. | ..+.+.|+.+++..+.-...... ......++..+.++.+- ....+.-.|+. +.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~--~~g~~~s~~~~~~~Yv~--~~~~l~~vdL~--T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN--TFGGFLSPDDRALYYVK--NGRSLRRVDLD--TLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-TTSSEEEEEE--TTTEEEEEETT--T--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC--ccceEEecCCCeEEEEE--CCCeEEEEECC--cCcEE
Confidence 47889977777664 4 45677788888765554422111 11234456665333333 33567777886 44433
Q ss_pred EEeecCCCCeEEEEEc--CCCCEEEEEcCCCcEEEecCCC----------CCCCCcceeeeecCCccccccccCCcceEE
Q 010302 79 ISKKVHMGPVKVMRYN--PVFDTVISADDKGIIEYWSPHT----------LQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~s--p~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
.........+-...|. .++..++-.-.... -|...+ ...+..++..+.++++. ..+..-+.++..
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-~~v~~~~~wlgH 192 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-KVVFEDTDWLGH 192 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEEEETTT--E-EEEEEESS-EEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEEEECCCCce-eEEEecCccccC
Confidence 3333344444445554 34444432211000 000000 00011123334444443 333345568889
Q ss_pred EEEcCCCCEEEEEeC----CCc-EEEEEcCC-CeEEEE
Q 010302 147 IEVSPDGKQFSITSP----DRR-IRVFWFRT-GKLRRV 178 (513)
Q Consensus 147 v~~spdg~~l~s~s~----D~~-I~iwd~~t-g~~~~~ 178 (513)
+.|||....+++-|. +.. -|||-+++ |...+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~ 230 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK 230 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee
Confidence 999997777776663 332 36776554 443333
No 403
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.70 E-value=4 Score=41.57 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=38.5
Q ss_pred eEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC
Q 010302 64 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 115 (513)
Q Consensus 64 ~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~ 115 (513)
.|.||+. .++++.++.-..+.+.++.|+.+. .|+....||.++++|+.
T Consensus 62 ~I~iys~---sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS---SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC---CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 5999998 678888877444899999998864 55566689999999885
No 404
>PHA02713 hypothetical protein; Provisional
Probab=94.68 E-value=0.43 Score=50.76 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=79.9
Q ss_pred cCCCEEEEEeCCC-----cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC-----------------
Q 010302 5 VDGLLCCSISNDK-----SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS----------------- 62 (513)
Q Consensus 5 ~dg~~las~s~D~-----~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d----------------- 62 (513)
-+|+..|.||.++ ++..||..+.+....-.++........+.. ++. +.+.|+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~--IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQY--IYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCE--EEEEeCCCccccccccccccccccc
Confidence 4677778888653 478899876554332222211111112221 222 45555433
Q ss_pred ------CeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC------CcEEEecCCC-CCCCCcceeeeec
Q 010302 63 ------SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK------GIIEYWSPHT-LQFPESEVSFRLK 129 (513)
Q Consensus 63 ------~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~i~iwd~~~-~~~~~~~~~~~~~ 129 (513)
..+..||........+..+.........++ -+++..+.|+.+ ..+..||+.+ .+.
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W---------- 493 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW---------- 493 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCe----------
Confidence 347788886444443333322222211222 256666777654 2356788876 332
Q ss_pred CCccccccccCCcceEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEEEE
Q 010302 130 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR--RIRVFWFRTGKLRRV 178 (513)
Q Consensus 130 ~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~--~I~iwd~~tg~~~~~ 178 (513)
+.+..+.........+++ +|+..++|+.|+ .+..||..+.+....
T Consensus 494 --~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 494 --ELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred --eEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 112222222222333444 888889999888 777888877776443
No 405
>PRK00969 hypothetical protein; Provisional
Probab=94.68 E-value=0.3 Score=49.29 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=72.4
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccC
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
......+.|+.|.|+|+|. ..+.++..|...++. |.|...+=--+ ..+..|-.. ..++... ..
T Consensus 49 ~~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~-~~vAfGp~~-----------s~l~p~~-~~ 111 (508)
T PRK00969 49 ETKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSR-SAVAFGPFE-----------SDLEPSR-EE 111 (508)
T ss_pred ccceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccc-cceeEcccc-----------cCccccc-Cc
Confidence 5678899999999999999 456667777766554 45554433322 233333211 1122111 11
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCC--CCeEEEEEEcCHHHHHHHhc
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDN--KHTVFGRVIKGMDVVQAIEK 490 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~--~~~vfG~V~~G~~~l~~i~~ 490 (513)
....++.|.+.-+|-+...+.+.|...+.....| .--+||+|+.|..+|+++..
T Consensus 112 -~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 112 -YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred -ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence 1234578888888766666766666654432111 12799999999999999865
No 406
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.58 E-value=0.38 Score=48.48 Aligned_cols=118 Identities=11% Similarity=0.205 Sum_probs=73.9
Q ss_pred CCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCcccccc
Q 010302 355 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 434 (513)
Q Consensus 355 ~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 434 (513)
.......+.|+.|.|+|+|-. ...+++.|.+.++. |-|..++=.-+ .-+..|-.. ..++.. .
T Consensus 44 e~~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~-~~vAfGp~~-----------sdl~p~--~ 105 (503)
T TIGR03268 44 RETKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTP-QEVAFGPFP-----------SDLEPS--R 105 (503)
T ss_pred cccceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecch-hheeeCccc-----------CCcccc--C
Confidence 356788999999999999993 56677777766554 34444432222 222323111 111111 1
Q ss_pred CCCCCCceEEEEeccCCCCCCceEEEEecCCCCCC---CCCeEEEEEEcCHHHHHHHhc
Q 010302 435 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLD---NKHTVFGRVIKGMDVVQAIEK 490 (513)
Q Consensus 435 ~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld---~~~~vfG~V~~G~~~l~~i~~ 490 (513)
.-....++.|.+.-+|-+...+.+.|...+..... ...-+||+|+.|..+|+++..
T Consensus 106 ~~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 106 EPSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred CcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 11123457888888887777777777766554222 256799999999999999865
No 407
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.56 E-value=2.3 Score=45.38 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=61.3
Q ss_pred cEEEEEEcCCCcceEEEEe----CCCC--eEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC-CcEEEec
Q 010302 41 AVEWVYKQGDVKAGLAISD----RNSS--FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-GIIEYWS 113 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~----~~d~--~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g~i~iwd 113 (513)
.+...+.++++....++.. ..|. .|.+++.. +.......+. ..+.-.|+|+|+.+++.+.. ..+++.+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4667788999886544431 1233 45555542 2222222232 37889999999888776533 2222322
Q ss_pred CCC-CCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 010302 114 PHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRV 167 (513)
Q Consensus 114 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~i 167 (513)
-.. .+ .+......++... .....|..+.|||||..++... ++.|.+
T Consensus 426 ~~~~gq----l~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 426 DPATGQ----LARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred cCCCce----EEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 111 01 0111111122111 3355799999999999988765 455555
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.56 E-value=0.94 Score=48.02 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=71.8
Q ss_pred cEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee-cCCCCeEEEEEc--CCCCEEEEEcCCCcEEEecCCCC
Q 010302 41 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYN--PVFDTVISADDKGIIEYWSPHTL 117 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-~h~~~V~~l~~s--p~~~~l~s~s~dg~i~iwd~~~~ 117 (513)
.+..+.-+..++ +++..+....+.|||.+ .+...+.-. .....|.++.|. |+++.+++.+..+.|.++.-..+
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~--~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTR--SGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcC--CcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 344444444444 55556667789999997 444333222 457889999997 68999999999999998843211
Q ss_pred CCCCcceeeeecCCccccc--cccCC-cceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010302 118 QFPESEVSFRLKSDTNLFE--ILKSK-TTVSAIEVSPDGKQFSITSPDRRIRVFW 169 (513)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~v~~v~~spdg~~l~s~s~D~~I~iwd 169 (513)
...... ..-..+.. +..|+ .+|.+.+|-++|..++.+ ++.+.|+|
T Consensus 107 dy~~~~-----p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 107 DYTNKG-----PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred hhhcCC-----cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 100000 00011111 22333 468899999999877644 56677776
No 409
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.54 E-value=1 Score=45.49 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=117.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC-------C
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA-------D 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~-------~ 73 (513)
|+|+++..-||.+-..|.|-||.....+...... ...-....+.+... .++.-.+-|+.. .
T Consensus 7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~----~~~~~~~~~~~~~~--------~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE----QPPDLDYNFRRFSL--------NNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp EEEETTTTEEEEEETTS-EEEEEEEE----------------------S--G--------GGSS-SEEE-GGG--TT-SE
T ss_pred EEecCCCceEEEEccCCcEEEEEcccCCCCCccC----CCcccCcccccccc--------cCCCcceEEehhhCCccccc
Confidence 4678888888999999999999886433221000 00011111111100 011112222210 0
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC--
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-- 151 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-- 151 (513)
...+...+...+++|++++.| +=..++.|.++|.+.|.|++.... .|.....+ ...-......+.++.|+.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPav-----I~~~~i~~-~~~~~~~~~~vt~ieF~vm~ 147 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAV-----IYNENIRE-SFLSKSSSSYVTSIEFSVMT 147 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEE-----EEEEEGGG---T-SS----EEEEEEEEEE
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeE-----Eeeccccc-cccccccccCeeEEEEEEEe
Confidence 123445555678999999997 445889999999999999976332 33321111 001112345688888862
Q ss_pred ---CC---CEEEEEeCCCcEEEEEcC--C-CeEEEEecccHHHHHHHhcCCCCcccccccc--ccc-eeeeeeeccccCC
Q 010302 152 ---DG---KQFSITSPDRRIRVFWFR--T-GKLRRVYDESLEVAQDLQRSDAPLYRLEAID--FGR-RMAVEKEIEKTET 219 (513)
Q Consensus 152 ---dg---~~l~s~s~D~~I~iwd~~--t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~-r~~~e~e~~~~~~ 219 (513)
|+ -.|.+|...|.+.+|.+. . +.....+.+.. .....++..+...+ .|+ ..+....+..-.
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~- 220 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT------TNHDSPILSIIPINADTGESALATISAMQGLS- 220 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--------SS----EEEEEETTT--B-B-BHHHHHGGG-
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc------ccCCCceEEEEEEECCCCCcccCchhHhhccc-
Confidence 33 367788889999999764 1 33322222211 11111222222211 011 011000000000
Q ss_pred CCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCC
Q 010302 220 APPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD 299 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 299 (513)
. .+ .-..+++..+..++||+...+.+.....-.+. .....+.+ +++. . ...
T Consensus 221 -~--g~---~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~--~~~~~~~v------------v~~~-------~--~~~ 271 (395)
T PF08596_consen 221 -K--GI---SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDP--FLCSSASV------------VPTI-------S--RNG 271 (395)
T ss_dssp -G--T-------EEEEEE-SSEEEEE-TT---EEEEE-SS---EEEEEEEE------------EEEE----------EEE
T ss_pred -c--CC---CcCcEEEEEcccceEEEeCCCCcccceeeccc--cccceEEE------------Eeec-------c--cCC
Confidence 0 00 01237778888899999998887765543221 11111111 0000 0 134
Q ss_pred CeEEEeeecCceEEEEecCC
Q 010302 300 PTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 300 ~~l~~s~~~~~~i~i~~~~~ 319 (513)
...+++-+.++.+.+|+-.+
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT
T ss_pred ceEEEEEECCCcEEEEECCC
Confidence 56788899999999998765
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.17 Score=55.30 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=66.2
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccc
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
.++.|+..|.+...|.. ++-.+...-..-..+|++++|+.+|..++.|-.+|.|.+||+... ..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~-~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--------------k~l 165 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMT-GNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--------------KIL 165 (1206)
T ss_pred eEEEEcCchhhhhhhhh-cccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--------------cce
Confidence 56777777888888875 122222333345689999999999999999999999999999773 334
Q ss_pred cccccCCcce---EEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010302 135 FEILKSKTTV---SAIEVSPDGKQFSITSPDRRIRVFWF 170 (513)
Q Consensus 135 ~~~~~~~~~v---~~v~~spdg~~l~s~s~D~~I~iwd~ 170 (513)
+.+..|..+. ..+.+..++..+.++..-|. +|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5555444443 33444445556666655555 5654
No 411
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=2.7 Score=37.68 Aligned_cols=158 Identities=15% Similarity=0.066 Sum_probs=88.5
Q ss_pred CCCEEEEEeC--CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec
Q 010302 6 DGLLCCSISN--DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 6 dg~~las~s~--D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
+|+++.+.+. ...|++||+.+++.+....+....---..+. ..+.. +..-.-.++....+|.+ +.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit--~~gd~-~y~LTw~egvaf~~d~~--t~~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT--KLGDY-FYQLTWKEGVAFKYDAD--TLEELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee--eccce-EEEEEeccceeEEEChH--Hhhhhcccc-
Confidence 5677777774 4579999999999887777652111011111 11222 22333467778888887 666666553
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCC
Q 010302 84 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 163 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~ 163 (513)
..+.=+.++ .+++.|+.++...+++.-|++++.....+.+-+ .+.++. ..+.+.| -||...|-.-.+.
T Consensus 129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~--~g~pv~-------~LNELE~-VdG~lyANVw~t~ 196 (262)
T COG3823 129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTD--DGVPVS-------KLNELEW-VDGELYANVWQTT 196 (262)
T ss_pred cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEE--CCeecc-------cccceee-eccEEEEeeeeec
Confidence 222224443 466667777777788877887755432211100 011111 1222333 2555555444556
Q ss_pred cEEEEEcCCCeEEEEecc
Q 010302 164 RIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 164 ~I~iwd~~tg~~~~~~~~ 181 (513)
.|-..+..+|+.+..++-
T Consensus 197 ~I~rI~p~sGrV~~widl 214 (262)
T COG3823 197 RIARIDPDSGRVVAWIDL 214 (262)
T ss_pred ceEEEcCCCCcEEEEEEc
Confidence 666668899998887763
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.28 E-value=2.8 Score=39.60 Aligned_cols=149 Identities=15% Similarity=0.063 Sum_probs=78.2
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEe-cCCCCCcce
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYD-ARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd-~~~~~~~~i 78 (513)
.++|+||+.+|... .++.-.+|-...+....... ....+...+|++++. +.+....+....++. ...+....+
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~~PS~d~~g~--~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLTRPSWDPDGW--VWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccccccccCCCC--EEEEEcCCCceEEEEecCCCcceeE
Confidence 36899999887766 23333344333333322221 123566778888855 444444455555553 221122222
Q ss_pred EEeecCC-CCeEEEEEcCCCCEEEEEc---CCCcEEEecCCCCC--CCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 79 ISKKVHM-GPVKVMRYNPVFDTVISAD---DKGIIEYWSPHTLQ--FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 79 ~~~~~h~-~~V~~l~~sp~~~~l~s~s---~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
..-.... ..|+++.+||||..++... .++.|.+=-+.... .|.. ....+.........+.+++|.++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~-------l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR-------LTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce-------eccceEecccccCcceeeeecCC
Confidence 1111111 2899999999999886555 34555554321100 0000 01111222223457899999999
Q ss_pred CCEEEEEeC
Q 010302 153 GKQFSITSP 161 (513)
Q Consensus 153 g~~l~s~s~ 161 (513)
+.+++.+..
T Consensus 177 ~~L~V~~~~ 185 (253)
T PF10647_consen 177 STLVVLGRS 185 (253)
T ss_pred CEEEEEeCC
Confidence 988776664
No 413
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.25 E-value=8.6 Score=40.63 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=84.5
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCC--CcceEEEEeC-----CCCeEEEEecCCCCCcceEE
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGD--VKAGLAISDR-----NSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~--~~~~~l~s~~-----~d~~I~iwd~~~~~~~~i~~ 80 (513)
..++.++.|+.+...|.++++.+-...+..+... ..+..+|- .. .+++..+ .++.|.-+|.+ +++.+-.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~--TG~~lW~ 196 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAK--TGKLVWR 196 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECC--CCceeEe
Confidence 4566677899999999999998766554322110 01111121 11 1333221 25788888887 6666655
Q ss_pred eecCC-------------------------------CCe-EEEEEcCCCCEEEEEcCCCcEEEecCCC----CCCCCcce
Q 010302 81 KKVHM-------------------------------GPV-KVMRYNPVFDTVISADDKGIIEYWSPHT----LQFPESEV 124 (513)
Q Consensus 81 ~~~h~-------------------------------~~V-~~l~~sp~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~ 124 (513)
+..-. ..+ ..+++.|..+++..+.....- |+-.. ...-..++
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p--~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP--WNSHLRPGDNLYTSSIV 274 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC--CCCCCCCCCCccceeEE
Confidence 43100 011 134566666666555433211 21100 00011223
Q ss_pred eeeecCCcccccccc--CC-------cceEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeEEE
Q 010302 125 SFRLKSDTNLFEILK--SK-------TTVSAIEVSPDGK---QFSITSPDRRIRVFWFRTGKLRR 177 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~--~~-------~~v~~v~~spdg~---~l~s~s~D~~I~iwd~~tg~~~~ 177 (513)
..+.++++..-.++. |. ....-+....+|+ .++.+..+|.+.+.|-+||+.+.
T Consensus 275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 334444444333322 22 1122233335776 67788899999999999999874
No 414
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.25 E-value=1.1 Score=44.12 Aligned_cols=142 Identities=11% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCEEEEEeC----------CCcEEEEEccCC-----ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 7 GLLCCSISN----------DKSVKIYDVVNY-----DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 7 g~~las~s~----------D~~v~iwd~~~~-----~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
-.+|+.|.. .|.|.++++... ++..... ...++.+.++... .+. ++++.+ +.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~g--~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAVG--NKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEET--TEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEeec--CEEEEEEcc
Confidence 467776642 288999999873 2222212 2345778877765 222 444443 589999997
Q ss_pred CCCCcceEEeec--CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEE
Q 010302 72 ADSNEPLISKKV--HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAI 147 (513)
Q Consensus 72 ~~~~~~i~~~~~--h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v 147 (513)
..+.+..... ....++++.. .+++++.|+....+.++..+. ....+..+.. ...++.++
T Consensus 116 --~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~-------------~~~~l~~va~d~~~~~v~~~ 178 (321)
T PF03178_consen 116 --NSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDE-------------ENNKLILVARDYQPRWVTAA 178 (321)
T ss_dssp --TTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEET-------------TTE-EEEEEEESS-BEEEEE
T ss_pred --CcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEc-------------cCCEEEEEEecCCCccEEEE
Confidence 3331222222 2235666655 466999999888888773321 0111222222 35568899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
+|-+|++.++.+..+|.+.++...
T Consensus 179 ~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 179 EFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEecCCcEEEEEcCCCeEEEEEEC
Confidence 998777888889999999998764
No 415
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.15 E-value=0.15 Score=46.07 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=58.4
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEE-EcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcc
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMR-YNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTN 133 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~-~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 133 (513)
-++.|..++.|.+|.+.. .+........-...|.++. --.++.+..++..|+.|+.|++.-.+ .
T Consensus 72 ~~~vG~~dg~v~~~n~n~-~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k--------------~ 136 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNL-EGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK--------------V 136 (238)
T ss_pred eEEeecccceEEEecCCc-cchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc--------------e
Confidence 577788899999998852 1222222212223333332 22355678899999999999885422 2
Q ss_pred ccccccCC-cceEEEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 010302 134 LFEILKSK-TTVSAIEVSPDGKQFSIT--SPDRRIRVFWFRT 172 (513)
Q Consensus 134 ~~~~~~~~-~~v~~v~~spdg~~l~s~--s~D~~I~iwd~~t 172 (513)
+.....|. ..+.....+..++.++.+ |.|..++.|++..
T Consensus 137 ~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 137 LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22233344 334444555555566555 5666666666543
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.12 E-value=4.3 Score=36.71 Aligned_cols=110 Identities=15% Similarity=0.255 Sum_probs=63.7
Q ss_pred CCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC------cEEEe---cCC-CCCCCCccee--ee
Q 010302 60 RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG------IIEYW---SPH-TLQFPESEVS--FR 127 (513)
Q Consensus 60 ~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg------~i~iw---d~~-~~~~~~~~~~--~~ 127 (513)
...+.|.+|++.....+++.++.. -+.|..+.++..|+++++-=.+. .+|+| ... ....|..... ..
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~ 113 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHR 113 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccc
Confidence 445679999997556677777753 37899999999999999854322 56665 221 1111111000 00
Q ss_pred --------ecCCccccccccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 010302 128 --------LKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTG 173 (513)
Q Consensus 128 --------~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s~s~D~~I~iwd~~tg 173 (513)
.+..-.+.++. -...+.+++..| .|+.++ |+ ++++.+|.+..+
T Consensus 114 v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 114 VTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQ 165 (215)
T ss_pred cccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEE
Confidence 00001111111 244678888888 455544 44 778999987543
No 417
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.00 E-value=5.8 Score=37.74 Aligned_cols=164 Identities=16% Similarity=0.261 Sum_probs=88.9
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccc
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
.++.|.++| +.++++. ......... +...|..+...|+-+.++.-+ |+.+.++++....................
T Consensus 9 ~L~vGt~~G-l~~~~~~-~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLS-DPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred EEEEEECCC-EEEEEec-CCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 555566777 8889883 123333332 334499999999888877765 48999999876443221000000000000
Q ss_pred cccccCCcceEEEE--EcCCCCEEEEEeCCCcEEEEEcCCCeE-E-EEecccHHHHHHHhcCCCCccccccccccceeee
Q 010302 135 FEILKSKTTVSAIE--VSPDGKQFSITSPDRRIRVFWFRTGKL-R-RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 210 (513)
Q Consensus 135 ~~~~~~~~~v~~v~--~spdg~~l~s~s~D~~I~iwd~~tg~~-~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~ 210 (513)
.........+...+ -.+.+...+......+|.+|.+..... . ..+
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~------------------------------- 132 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL------------------------------- 132 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee-------------------------------
Confidence 00111112233333 112333333344455888887765311 0 111
Q ss_pred eeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCCC
Q 010302 211 EKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKV 259 (513)
Q Consensus 211 e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~ 259 (513)
+|+. ....+..++|. ++.|+.+...+..++|+.+++...++...
T Consensus 133 -ke~~--lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~ 176 (275)
T PF00780_consen 133 -KEIS--LPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPS 176 (275)
T ss_pred -EEEE--cCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCcc
Confidence 1111 11344567777 78888898889999999998887776433
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.46 E-value=0.19 Score=33.50 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecC
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSP 114 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~ 114 (513)
...|.+++|+|..++++.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999977
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.40 E-value=1.6 Score=45.07 Aligned_cols=118 Identities=11% Similarity=0.078 Sum_probs=67.9
Q ss_pred CcEEEEEEcCCCcce--EEEEeCCCCeEEEEecCCC---CCcceEEeecC---CCC--eEEEEEcCCCCEEEEEcCCCcE
Q 010302 40 GAVEWVYKQGDVKAG--LAISDRNSSFVHIYDARAD---SNEPLISKKVH---MGP--VKVMRYNPVFDTVISADDKGII 109 (513)
Q Consensus 40 ~~v~~v~~s~~~~~~--~l~s~~~d~~I~iwd~~~~---~~~~i~~~~~h---~~~--V~~l~~sp~~~~l~s~s~dg~i 109 (513)
.++..++|.|..... .+.+-...+.|.||.+... ..+.+..-..+ .-+ -..+.|+|....|+.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 478889998753211 3334445678999998521 22333222111 112 2357899998888665544332
Q ss_pred EEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC-CcEEEEEc
Q 010302 110 EYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-RRIRVFWF 170 (513)
Q Consensus 110 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D-~~I~iwd~ 170 (513)
-+.+++.. ...++.=....+.|.|.||.+||++|+.+-.. =.-++||-
T Consensus 137 V~~sV~~d-------------~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCD-------------SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeC-------------CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 34455331 12222222456789999999999988765433 34567774
No 420
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.37 E-value=2.9 Score=40.60 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=84.7
Q ss_pred cEEEEEccCCceeEEEEcCC---CCCcEEEEEEcCCCcceEEEEeCC---------CCeEEEEecCCCCCcceEEeecCC
Q 010302 18 SVKIYDVVNYDMMLMIRLPF---IPGAVEWVYKQGDVKAGLAISDRN---------SSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~---~~~~v~~v~~s~~~~~~~l~s~~~---------d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
-+.+++..++..+..+.... .....+.....+++. +.++... ...-.+|-+.. .+..++.+..|-
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 45667766555432222111 112344555566655 4433322 11114444431 344555555555
Q ss_pred CCeEEEEEcCCCCEEEEEcCC-CcEEEecCCCCCCCCcceeeeecCCcc-ccccccCCcceEEEEEcCCCCEEEEEeCCC
Q 010302 86 GPVKVMRYNPVFDTVISADDK-GIIEYWSPHTLQFPESEVSFRLKSDTN-LFEILKSKTTVSAIEVSPDGKQFSITSPDR 163 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~s~s~D~ 163 (513)
..-..|+||||++.|..+... +.|.-+++.....+.. +.. ...+....+..-.++...+|++.+++-.+|
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~--------~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG--------GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC--------CcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 556789999999888776654 6677666542111100 111 122223456677889999999887555554
Q ss_pred -cEEEEEcCCCeEEEEecc
Q 010302 164 -RIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 164 -~I~iwd~~tg~~~~~~~~ 181 (513)
.|.+|+.. |+++..+.-
T Consensus 235 ~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred ceEEEECCC-CcEEEEEEC
Confidence 89999988 888877653
No 421
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.37 E-value=3.4 Score=42.15 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=65.8
Q ss_pred EEEEEcCCCcceEEE-E--eCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC-----------c
Q 010302 43 EWVYKQGDVKAGLAI-S--DRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-----------I 108 (513)
Q Consensus 43 ~~v~~s~~~~~~~l~-s--~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----------~ 108 (513)
....++|+++.+.+. + |+....++++|+. +++.+...-.. .....+.|.++++.|+-...+. .
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~--tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE--TGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETT--TTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECC--CCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 356788998853221 2 2334568999997 66555432111 1223499999988876554332 2
Q ss_pred EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC---C-CcEEEEEcCCC
Q 010302 109 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP---D-RRIRVFWFRTG 173 (513)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~---D-~~I~iwd~~tg 173 (513)
|..|.+.+... ....++.-.........+..++|+++|+..+. + ..+.+.++..+
T Consensus 204 v~~~~~gt~~~----------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQS----------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GG----------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChH----------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 56666654221 01122222222223678899999998875442 3 45777788764
No 422
>PHA02713 hypothetical protein; Provisional
Probab=93.36 E-value=2.8 Score=44.67 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=19.7
Q ss_pred CCCEEEEccccc---eEEEEcccCcEEEEeCCCC
Q 010302 230 SSNFLIYATLLG---IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 230 ~g~~li~~s~~g---i~v~d~~t~~~v~~~g~~~ 260 (513)
+|+..+.|...+ +..+|+.+++.-.+...|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 456666665554 7778888887766554433
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.33 E-value=6.8 Score=42.22 Aligned_cols=151 Identities=8% Similarity=0.043 Sum_probs=93.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEE----EEc----------------CCCCCcEEEEEEcCCCcceEEEEeCCCCeEE
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLM----IRL----------------PFIPGAVEWVYKQGDVKAGLAISDRNSSFVH 66 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~----~~l----------------~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~ 66 (513)
+.+|..+. .+.|.||+......... +.+ ...+..++.+.....+...+|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666644 67999999864222110 010 0133457777776667667899999999999
Q ss_pred EEecCC-------C-----C------CcceEEeecCCCCeEEEEEc--CCCCEEEEEcCCCcEEEecCCCCCCCCcceee
Q 010302 67 IYDARA-------D-----S------NEPLISKKVHMGPVKVMRYN--PVFDTVISADDKGIIEYWSPHTLQFPESEVSF 126 (513)
Q Consensus 67 iwd~~~-------~-----~------~~~i~~~~~h~~~V~~l~~s--p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 126 (513)
+|..+. . . -++-..+. -...+++++++ ...++||.++....|.||-.....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~-------- 198 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD-------- 198 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc--------
Confidence 996520 0 0 01222232 23468999998 788899999999999988332200
Q ss_pred eecCCccccccccCCcceEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 010302 127 RLKSDTNLFEILKSKTTVSAIEVSPDG---K---QFSITSPDRRIRVFWF 170 (513)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~v~~spdg---~---~l~s~s~D~~I~iwd~ 170 (513)
.......-..|..-|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 199 ---~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 199 ---ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ---cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 000010011245568889997643 2 7778888999998887
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.15 E-value=16 Score=40.27 Aligned_cols=110 Identities=15% Similarity=0.003 Sum_probs=65.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCC------cEEEEEEcCC--------------CcceEEEEeCCCCeEE
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPG------AVEWVYKQGD--------------VKAGLAISDRNSSFVH 66 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~------~v~~v~~s~~--------------~~~~~l~s~~~d~~I~ 66 (513)
+..|..|+.++.|.-.|..+|+.+-......... .|..+.+... .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4566777888999999999999887766442211 1222322211 1111455666788888
Q ss_pred EEecCCCCCcceEEeecCCCCe-------------EEEEEcC--CCCEEEEEcC----------CCcEEEecCCCCCC
Q 010302 67 IYDARADSNEPLISKKVHMGPV-------------KVMRYNP--VFDTVISADD----------KGIIEYWSPHTLQF 119 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h~~~V-------------~~l~~sp--~~~~l~s~s~----------dg~i~iwd~~~~~~ 119 (513)
-.|.+ +++.+..+.. ...| ..+.-.| .+..++.++. +|.|+-+|.+++++
T Consensus 274 ALDA~--TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD--TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC--CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 88887 7887766531 1111 0111223 2345555532 67899999998775
No 425
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=0.32 Score=53.20 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
+..+|.|+..|.+-..|+... +.....-....+++.+++|+.++. +++.|-.+|.|.+||.. .+++++.+..|..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~--~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMH--RAKILKVITEHGA 173 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEcc--CCcceeeeeecCC
Confidence 456777888888888777542 211112223457899999999998 99999999999999997 7788888887777
Q ss_pred CeEEEEEc---CCCCEEEEEcCCCcEEEec
Q 010302 87 PVKVMRYN---PVFDTVISADDKGIIEYWS 113 (513)
Q Consensus 87 ~V~~l~~s---p~~~~l~s~s~dg~i~iwd 113 (513)
+.+++-+. .++..+++++..|. +|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 76665543 45557888888886 453
No 426
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.29 Score=47.31 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=62.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCCCCceEEEEe
Q 010302 368 DIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMA 447 (513)
Q Consensus 368 ~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~ 447 (513)
.+.++|.++ +|++++.|+.|.+.|.+. -.+..|-++. ..+.-..+.+.|. .. ...+|.+...
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lr----i~~~tntfis----------~~~lq~~~~~~en-~d--~RerG~iTvR 265 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLR----IDVTTNTFIS----------DDTLQEEKVPEEN-FD--LRERGAITVR 265 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEE----EEEeccceee----------ccccccccCChhh-hh--hhhcceEEEE
Confidence 477888865 999999999999987421 0011111111 1111123334443 22 2356899999
Q ss_pred ccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhc
Q 010302 448 NAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEK 490 (513)
Q Consensus 448 ~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~ 490 (513)
+.|-++ -.-||.-.+-+ ---.|.|.|||.+||++++--++
T Consensus 266 n~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 266 NVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred eeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence 887442 25788776554 23468999999999999875443
No 427
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=92.72 E-value=0.4 Score=40.42 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHhh
Q 010302 366 MGDIHMKLYPEECPKTVENFTTHC 389 (513)
Q Consensus 366 ~G~i~i~l~~~~~P~~~~~f~~l~ 389 (513)
--.++.+|..+.||+||+.|.++-
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred CeEEEEEEcccCChHHHHHHHHhC
Confidence 346899999999999999999885
No 428
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.45 E-value=9.8 Score=35.92 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=75.5
Q ss_pred EEEEeCCCc-EEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-----CCCeEEEEecCCCCCcceEEeec
Q 010302 10 CCSISNDKS-VKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-----NSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 10 las~s~D~~-v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-----~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
++.+-.-|+ ..++|..+.+....+.-.....---.=.||+++. ++...- .-|.|=|||.+ ...+.+-.+..
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t 159 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--LLYATENDFDPNRGVIGVYDAR-EGFQRVGEFST 159 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--EEEeecCCCCCCCceEEEEecc-cccceeccccc
Confidence 444444444 3456666555444433111100111124788887 333322 24678999986 34455666777
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCCcEEEe--------cCCCCCCCCcceeeeecCCccccc--cc--cCCcceEEEEEcC
Q 010302 84 HMGPVKVMRYNPVFDTVISADDKGIIEYW--------SPHTLQFPESEVSFRLKSDTNLFE--IL--KSKTTVSAIEVSP 151 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s~dg~i~iw--------d~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~v~~v~~sp 151 (513)
|.-.-..+.|.+||+.++.+. |-|+.- ++.+++. ..+..+..+++.+.+ +. .+...+..++.-+
T Consensus 160 ~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMeP--Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~ 235 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEP--SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR 235 (366)
T ss_pred CCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCc--cEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence 777778899999999998764 334443 2222111 112223233333322 22 2445578888888
Q ss_pred CCCEEEE
Q 010302 152 DGKQFSI 158 (513)
Q Consensus 152 dg~~l~s 158 (513)
||..++.
T Consensus 236 dgtvwfg 242 (366)
T COG3490 236 DGTVWFG 242 (366)
T ss_pred CCcEEEE
Confidence 8876654
No 429
>PHA03098 kelch-like protein; Provisional
Probab=92.44 E-value=11 Score=39.92 Aligned_cols=106 Identities=10% Similarity=-0.062 Sum_probs=48.8
Q ss_pred CCCEEEEEeCCC------cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC-----CeEEEEecCCCC
Q 010302 6 DGLLCCSISNDK------SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS-----SFVHIYDARADS 74 (513)
Q Consensus 6 dg~~las~s~D~------~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d-----~~I~iwd~~~~~ 74 (513)
++..++.||.++ .+..||..+.+....-.+.........+.. + .. +.+.|+.+ ..+..||.....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~-~~-lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--N-NR-IYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--C-CE-EEEEeCCCCCEecceEEEEcCCCCc
Confidence 456666676432 567788877655332222211111122221 2 22 44444443 346778876333
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEEEEEcCC------CcEEEecCCCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTVISADDK------GIIEYWSPHTL 117 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~i~iwd~~~~ 117 (513)
......+.........+. -+++..+.|+.+ ..+..||+.+.
T Consensus 370 W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred eeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 332222221111111222 256666777632 34677887664
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.00 E-value=0.13 Score=54.95 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=59.2
Q ss_pred CeEEEEecCCCCCcceEEe-----ecCCCCeEEEEEcC---CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccc
Q 010302 63 SFVHIYDARADSNEPLISK-----KVHMGPVKVMRYNP---VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 63 ~~I~iwd~~~~~~~~i~~~-----~~h~~~V~~l~~sp---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
+.+.|||+..-.++....+ .....++.-+.|+| +.-++..+..++.+++....+. ..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra---------------~~ 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA---------------LR 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH---------------HH
Confidence 4578898753344433322 23344556677776 5566777778888887655331 12
Q ss_pred cccccCCcceEEEE-----------EcCCCCEEEEEeCCCcEEEEEc
Q 010302 135 FEILKSKTTVSAIE-----------VSPDGKQFSITSPDRRIRVFWF 170 (513)
Q Consensus 135 ~~~~~~~~~v~~v~-----------~spdg~~l~s~s~D~~I~iwd~ 170 (513)
..+.+|..++..++ .||||+.+|.++.||.++.|-+
T Consensus 218 ~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 218 SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 33444665555443 6899999999999999988864
No 431
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.71 E-value=20 Score=37.90 Aligned_cols=107 Identities=13% Similarity=-0.001 Sum_probs=59.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCc----EE-----EEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGA----VE-----WVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~----v~-----~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
+..|..++.++.|.-+|..+++.+-.......... ++ .+... +. .++.++.|+.+.-.|.+ +++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~--TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAK--TGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECC--CCCE
Confidence 44566677788999999999998777654321110 00 01111 11 34456678888888887 7777
Q ss_pred eEEeecCC-CCeEEEEEcC--CCCEEEEEc------CCCcEEEecCCCCCC
Q 010302 78 LISKKVHM-GPVKVMRYNP--VFDTVISAD------DKGIIEYWSPHTLQF 119 (513)
Q Consensus 78 i~~~~~h~-~~V~~l~~sp--~~~~l~s~s------~dg~i~iwd~~~~~~ 119 (513)
+-...... ..-..+.-+| .+..++.+. .+|.|.-+|.++++.
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 76654211 0001111122 123444433 267888888888764
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.60 E-value=11 Score=40.33 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=78.6
Q ss_pred cCCCEEEEEeCC------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCe-----EEEEecCCC
Q 010302 5 VDGLLCCSISND------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSF-----VHIYDARAD 73 (513)
Q Consensus 5 ~dg~~las~s~D------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~-----I~iwd~~~~ 73 (513)
-+|...++||.| .++-.||..+.+....-.+....... .+. .-++. +.+.|+.|+. +..||....
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~-~l~g~--iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVA-VLDGK--LYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeE-EECCE--EEEEeccccccccccEEEecCCCC
Confidence 467788889888 45667888766643322221111111 111 11233 6677777654 678888744
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC------cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG------IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
....+..........-.+.+ +|...+.|+.++ ++..+|+.+.+. ..+..+..........
T Consensus 407 ~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W------------~~~~~M~~~R~~~g~a 472 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTW------------TLIAPMNTRRSGFGVA 472 (571)
T ss_pred cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCce------------eecCCcccccccceEE
Confidence 45444433222222222222 777778888554 456777766443 1111111111111222
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEEcCCCeEE
Q 010302 148 EVSPDGKQFSITSPDR-----RIRVFWFRTGKLR 176 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~-----~I~iwd~~tg~~~ 176 (513)
.+ ++...+.|+.|+ ++..||..+.+..
T Consensus 473 ~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 473 VL--NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred EE--CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 23 777778888765 2556666665553
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.26 E-value=5.4 Score=40.01 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=50.8
Q ss_pred CeEecCCCEEEEEe-----------CCC-cEEEEEccCCcee--EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEE
Q 010302 1 MQVSVDGLLCCSIS-----------NDK-SVKIYDVVNYDMM--LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVH 66 (513)
Q Consensus 1 v~~s~dg~~las~s-----------~D~-~v~iwd~~~~~~~--~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~ 66 (513)
|+|.++|+++++-. ..+ .|.+++-.+++.. ....+.........+.+.+++ ++++. .....+
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~-~~~i~~ 94 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVAT-PPDILF 94 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeC-CCeEEE
Confidence 57899999888753 223 6777765443221 111111122344667776665 44443 333333
Q ss_pred EEecCCC-----CCcceE-Eeec----CCCCeEEEEEcCCCCEEEEEc
Q 010302 67 IYDARAD-----SNEPLI-SKKV----HMGPVKVMRYNPVFDTVISAD 104 (513)
Q Consensus 67 iwd~~~~-----~~~~i~-~~~~----h~~~V~~l~~sp~~~~l~s~s 104 (513)
+.|.... ..+.+. .+.. +......++|.|+|.+.++.+
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4454311 111111 1221 234467899999998777655
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=1.7 Score=48.10 Aligned_cols=113 Identities=17% Similarity=0.076 Sum_probs=68.8
Q ss_pred EEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc---eEEee------cCCCCeEEEEEcCCCC-EEEEEcCCCcEEEec
Q 010302 44 WVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP---LISKK------VHMGPVKVMRYNPVFD-TVISADDKGIIEYWS 113 (513)
Q Consensus 44 ~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~---i~~~~------~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd 113 (513)
.+...++.....++..+++-.|..||++.-.... -.-+. .......++.|+|.-. ..+.+..|+.|++..
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~ 184 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS 184 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence 3334455555566666677788999986211100 11111 1123356788998543 346667788888875
Q ss_pred CCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010302 114 PHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWF 170 (513)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~ 170 (513)
+.... ..... .......++++|+|.|+.++.|-..|++.-|-.
T Consensus 185 ~~~~~-------------~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 185 TKQLA-------------QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhh-------------hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 53211 00111 123456889999999999999999999988864
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.70 E-value=4.3 Score=43.20 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=63.4
Q ss_pred eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC-------CCCCcceEEee--cC
Q 010302 14 SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR-------ADSNEPLISKK--VH 84 (513)
Q Consensus 14 s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~-------~~~~~~i~~~~--~h 84 (513)
+...++.|||...+.......+ ...+.|..+.|...+....+.+-+..+.|.+|.-. ..+..+++.+. .|
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~ 126 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH 126 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence 3455799999998776555544 24567888888755444466666677888887531 11234555443 44
Q ss_pred C-CCeEEEEEcCCCCEEEEEcCCCcEEEec
Q 010302 85 M-GPVKVMRYNPVFDTVISADDKGIIEYWS 113 (513)
Q Consensus 85 ~-~~V~~l~~sp~~~~l~s~s~dg~i~iwd 113 (513)
+ .+|.+..|.++|.+++.++ +.+.|+|
T Consensus 127 T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred CCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 4 6899999999998776554 3466664
No 436
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.69 E-value=14 Score=37.20 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=71.8
Q ss_pred cCCCEEEEEe--C----CCcEEEEEccCCceeEEEEcCCCC-CcEEEEEEcCCCcceEEEEeC-----------------
Q 010302 5 VDGLLCCSIS--N----DKSVKIYDVVNYDMMLMIRLPFIP-GAVEWVYKQGDVKAGLAISDR----------------- 60 (513)
Q Consensus 5 ~dg~~las~s--~----D~~v~iwd~~~~~~~~~~~l~~~~-~~v~~v~~s~~~~~~~l~s~~----------------- 60 (513)
|+|+.++|+- . -|-+-+.|-++++........... .--..+.+.|..+ +++|+.
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhh
Confidence 6888888872 2 256778888888777665533221 1223344445433 454432
Q ss_pred ---CCCeEEEEecCCCCCcceEEeecCC--CCeEEEEEcC--CCCE-EEEEcCCCcEEEe-cCCCCCCCCc-ceeeeec-
Q 010302 61 ---NSSFVHIYDARADSNEPLISKKVHM--GPVKVMRYNP--VFDT-VISADDKGIIEYW-SPHTLQFPES-EVSFRLK- 129 (513)
Q Consensus 61 ---~d~~I~iwd~~~~~~~~i~~~~~h~--~~V~~l~~sp--~~~~-l~s~s~dg~i~iw-d~~~~~~~~~-~~~~~~~- 129 (513)
...++.+||+. ..+.++++.... .....+.|.. +..+ ++.+--..+|-.| ....++.... ++..-.+
T Consensus 217 ~~~yG~~l~vWD~~--~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 217 AGKYGHSLHVWDWS--TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HH-S--EEEEEETT--TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cccccCeEEEEECC--CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 23569999998 888888887332 2355677754 3443 3333333344333 1111111000 0000000
Q ss_pred -----CCccccccccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q 010302 130 -----SDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 130 -----~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~t 172 (513)
....+..+..-..-|+.|.+|.|.++|..++ .+|.||.||+.+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0011222222345689999999999998777 599999999976
No 437
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.62 E-value=6.9 Score=40.77 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=80.8
Q ss_pred CcceEEEEe---CCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeee
Q 010302 51 VKAGLAISD---RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 127 (513)
Q Consensus 51 ~~~~~l~s~---~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 127 (513)
...+++++. .......+.|. .+.....+.........+...++|.+++..+ ..+..+|..- +. .+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~---~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v-----~~~ 181 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDN---NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KV-----IWE 181 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEET---TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---E-----EEE
T ss_pred CCcEEEEeCCCCCCCceEEEECC---CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CE-----EEe
Confidence 444566666 34556677776 4555555542222211166678998887665 5677777632 10 111
Q ss_pred ecCCccccccccCCcceEEEEEcCCCCEEEEEeC-------------CCcEEEEEcCCCeEEEEecccH--HHHHHHhcC
Q 010302 128 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-------------DRRIRVFWFRTGKLRRVYDESL--EVAQDLQRS 192 (513)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-------------D~~I~iwd~~tg~~~~~~~~~~--~~i~~~~~~ 192 (513)
....... ..-| +.+..-|+|++|+.+.. .-.|..+| .+|+.+..++-.. ........
T Consensus 182 ~~l~~~~--~~~H----HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~- 253 (477)
T PF05935_consen 182 YDLPGGY--YDFH----HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVL- 253 (477)
T ss_dssp EE--TTE--E-B-----S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTG-
T ss_pred eecCCcc--cccc----cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccc-
Confidence 1000000 0112 35778899998887761 23466668 8999988875321 11000000
Q ss_pred CCCccccccccccceeeeeeeccccCCCCCCceEEcC-CCCEEEEcccc-ceEEEEcccCcEEEEeCCCC
Q 010302 193 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLL-GIKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 193 ~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~-~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~ 260 (513)
. ...++.... .-....=.+..++.+++ ++++|+++-.. .|-.+|..++++.-++|.++
T Consensus 254 -----~--~~~~~~~~~---~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 254 -----K--PYPYGDISG---SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -----G--T--SSSSS----SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred -----c--ccccccccc---CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 0 000000000 00000112446789999 45555555433 68888999999999998765
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.14 E-value=0.62 Score=50.13 Aligned_cols=148 Identities=9% Similarity=-0.055 Sum_probs=80.1
Q ss_pred CcEEEEEcc--CCceeEEEEcC---CCCCcEEEEEEcCCCc-ceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEE
Q 010302 17 KSVKIYDVV--NYDMMLMIRLP---FIPGAVEWVYKQGDVK-AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKV 90 (513)
Q Consensus 17 ~~v~iwd~~--~~~~~~~~~l~---~~~~~v~~v~~s~~~~-~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~ 90 (513)
|.+.|||+. .|+....+.+. .....+.-+.|+|.-- ..+++.+..++.|++..+. ......+..|...+..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~---ra~~~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNIN---RALRSLFRSHSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeec---hHHHHHHHhcCCCccc
Confidence 567788875 34433333221 1112234444444211 1267777778888877664 1122333456655544
Q ss_pred E-----------EEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc-eEEEEEcCCCC----
Q 010302 91 M-----------RYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT-VSAIEVSPDGK---- 154 (513)
Q Consensus 91 l-----------~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~spdg~---- 154 (513)
+ ..+|||..|+.+..||.++.|.+.- +......+++..+.|.+. -.|.-|+.+..
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi---------~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~ 300 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI---------TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVS 300 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee---------eccccHhhhhccCCCCCCCceeeeeccccccCCc
Confidence 3 3689999999999999999996532 111123345555555532 22222322211
Q ss_pred -----EEEEEe-CCCcEEEEEcCCCeEE
Q 010302 155 -----QFSITS-PDRRIRVFWFRTGKLR 176 (513)
Q Consensus 155 -----~l~s~s-~D~~I~iwd~~tg~~~ 176 (513)
++++++ .+..+++|.....+|+
T Consensus 301 i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 301 IGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cceeEEEEecccCCcceeEeeccchhhh
Confidence 344444 3667999987776665
No 439
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=1.1 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhh
Q 010302 368 DIHMKLYPEECPKTVENFTTHCR 390 (513)
Q Consensus 368 ~i~i~l~~~~~P~~~~~f~~l~~ 390 (513)
-|.||||.+.||.++..|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 49999999999999999998864
No 440
>PHA03098 kelch-like protein; Provisional
Probab=89.92 E-value=11 Score=40.00 Aligned_cols=152 Identities=10% Similarity=-0.035 Sum_probs=71.5
Q ss_pred cCCCEEEEEeCC-----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC--C----CeEEEEecCCC
Q 010302 5 VDGLLCCSISND-----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN--S----SFVHIYDARAD 73 (513)
Q Consensus 5 ~dg~~las~s~D-----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~--d----~~I~iwd~~~~ 73 (513)
-+|+.++.||.+ .++..||..+.+....-.++........+. .++ . +.+.|+. + ..+..||+...
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~-~-iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VNN-L-IYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--ECC-E-EEEECCcCCCCcccceEEEEeCCCC
Confidence 367777778765 356778877655433222211111111111 122 2 4444442 1 45788888633
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC--------cEEEecCCCCCCCCcceeeeecCCccccccccCCcceE
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG--------IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 145 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (513)
....+..+........++. .++..++.|+.+. .+.+||+.+.+. .. +..+........
T Consensus 417 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-------~~-----~~~~~~~r~~~~ 482 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-------TE-----LSSLNFPRINAS 482 (534)
T ss_pred eeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCce-------ee-----CCCCCcccccce
Confidence 3333222221111112222 2556666666432 267788766432 11 111111111112
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEE
Q 010302 146 AIEVSPDGKQFSITSPD-----RRIRVFWFRTGKLR 176 (513)
Q Consensus 146 ~v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~ 176 (513)
.+.+ +++.++.|+.+ ..+.+||..+.+..
T Consensus 483 ~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 483 LCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 2233 67777777753 46888888877653
No 441
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.82 E-value=21 Score=34.92 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=61.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCc-eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee--c
Q 010302 7 GLLCCSISNDKSVKIYDVVNYD-MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK--V 83 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~-~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~--~ 83 (513)
+.+|+.+. .+.|.+|++...+ ....-.... +..+..+....+ +++.|+....+.++..+. ....+..+. .
T Consensus 98 ~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~~~~----~I~vgD~~~sv~~~~~~~-~~~~l~~va~d~ 170 (321)
T PF03178_consen 98 NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSVFKN----YILVGDAMKSVSLLRYDE-ENNKLILVARDY 170 (321)
T ss_dssp TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEEETT----EEEEEESSSSEEEEEEET-TTE-EEEEEEES
T ss_pred CCEEEEee-cCEEEEEEccCcccchhhheecc-eEEEEEEecccc----EEEEEEcccCEEEEEEEc-cCCEEEEEEecC
Confidence 33444433 5799999998877 554444332 235566555433 566666666677765542 222222222 3
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC
Q 010302 84 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 115 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~ 115 (513)
....++++.|-++++.++.++.+|.+.++...
T Consensus 171 ~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 171 QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 34558888888666799999999999988553
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.60 E-value=1.6 Score=28.32 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.0
Q ss_pred cceEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 010302 142 TTVSAIEVSPDGK---QFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 142 ~~v~~v~~spdg~---~l~s~s~D~~I~iwd~~t 172 (513)
+.+.++.|||+.. +|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998544 777776789999999995
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.42 E-value=3.3 Score=38.09 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=57.4
Q ss_pred EcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc--------cCCcceEEEEEcCCCCEEEEEeCCCc
Q 010302 93 YNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL--------KSKTTVSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 93 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~s~s~D~~ 164 (513)
+..++++++....+|.+++||+.+.+..-. ...+..+. .....|..+.++.+|.-+++-+ +|.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--------~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--------PVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccC--------CccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 345788899999999999999988765322 11111111 3456689999999998887765 678
Q ss_pred EEEEEcCCCeEEEEecc
Q 010302 165 IRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~ 181 (513)
...|+..-+..++.-+.
T Consensus 89 ~y~y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 89 SYSYSPDLGCWIRVSDS 105 (219)
T ss_pred EEEeccccceeEEeccc
Confidence 89999887777766554
No 444
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.21 E-value=20 Score=33.81 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=64.6
Q ss_pred cEEEEEEcCCCcceEEEEe-CCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEec-CCCCC
Q 010302 41 AVEWVYKQGDVKAGLAISD-RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWS-PHTLQ 118 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~-~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd-~~~~~ 118 (513)
.+...+.++++....+++. .....+.++... +.....+.+ ..+....|++++...+....+...+++. ..+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~---~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG---GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC---CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 5778888999886544441 233445555442 222222222 3678889999987777766666666662 22211
Q ss_pred CCCcceeeeecCCcccc-ccccCCcceEEEEEcCCCCEEEEEe---CCCcEEEEE
Q 010302 119 FPESEVSFRLKSDTNLF-EILKSKTTVSAIEVSPDGKQFSITS---PDRRIRVFW 169 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~s~s---~D~~I~iwd 169 (513)
. .... ........|..+.+||||..+|... .++.|.+--
T Consensus 100 ~------------~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 100 G------------EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred c------------eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 1 1111 1111112899999999999988665 245565543
No 445
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.18 E-value=25 Score=35.02 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=53.0
Q ss_pred EEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEE--eCCCCe-EEEEecCCCCCcceEEeecCCC--CeEEEEE
Q 010302 19 VKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAIS--DRNSSF-VHIYDARADSNEPLISKKVHMG--PVKVMRY 93 (513)
Q Consensus 19 v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s--~~~d~~-I~iwd~~~~~~~~i~~~~~h~~--~V~~l~~ 93 (513)
|.--|+.+++...++. ....+..+.++|....++..+ |-.+.. -+||-++. .+.-...+..|.. .+.-=-|
T Consensus 170 i~~idl~tG~~~~v~~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHEfw 245 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFE---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHEFW 245 (386)
T ss_dssp EEEEETTT--EEEEEE---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEEEE
T ss_pred EEEEECCCCceeEEEe---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccccc
Confidence 3344555655544443 234567788888766543332 222332 36676652 3444444443332 2333458
Q ss_pred cCCCCEEEEEc-----CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC
Q 010302 94 NPVFDTVISAD-----DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 94 sp~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D 162 (513)
.|+|..+.--+ .+..|.-.|+.+++ .+.+ ....+...+-.++||++++-=+.|
T Consensus 246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~------------~~~~----~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGE------------RRRL----MEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTSS-EEEEEEETTT--EEEEEE-TTT--------------EEEE----EEE-SEEEEEE-TTSSEEEEEE--
T ss_pred cCCCCEEEEEeecCCCCceEEEeeCCCCCC------------ceEE----EeCCceeeeEEcCCCCEEEecCCC
Confidence 89998764322 23345555666532 1111 111245567778999998754433
No 446
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.88 E-value=17 Score=35.15 Aligned_cols=110 Identities=11% Similarity=0.218 Sum_probs=56.5
Q ss_pred CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecC-CC
Q 010302 38 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP-HT 116 (513)
Q Consensus 38 ~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~-~~ 116 (513)
..+.+..+..++++. +++.++.-....-||.-....++.. ..-...|.+|.|+|++.+.+.+ ..|.|+.=+. ..
T Consensus 143 ~~gs~~~~~r~~dG~--~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 143 TSGSINDITRSSDGR--YVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp ----EEEEEE-TTS---EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred CcceeEeEEECCCCc--EEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 345677777788887 7777776666677876411222222 2456789999999998876655 7787776651 11
Q ss_pred CCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC
Q 010302 117 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D 162 (513)
.+ .| .+.+..+....-.+..++|.+++...|+|+..
T Consensus 218 ~~------~w----~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 218 GE------TW----SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE------EE-------B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cc------cc----ccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 00 00 11111121222238899999998888876533
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.88 E-value=27 Score=34.95 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=54.8
Q ss_pred cEEEEEEcCCCcceEEEEeC-----------CCC-eEEEEecCCCCCcc--eEEeecCCCCeEEEEEcCCCCEEEEEcCC
Q 010302 41 AVEWVYKQGDVKAGLAISDR-----------NSS-FVHIYDARADSNEP--LISKKVHMGPVKVMRYNPVFDTVISADDK 106 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~~-----------~d~-~I~iwd~~~~~~~~--i~~~~~h~~~V~~l~~sp~~~~l~s~s~d 106 (513)
....++|.+++. +.++.. ..+ .|.+++-..++++. ...+.........+++.+++ +++ ++..
T Consensus 15 ~P~~ia~d~~G~--l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGR--LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCceeeECCCCC--EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 345566777766 555542 122 56666543223332 23343334456889999988 544 4444
Q ss_pred CcEEEecCCCCCCCCcceeeeecCCcccc-cccc----CCcceEEEEEcCCCCEEEEEe
Q 010302 107 GIIEYWSPHTLQFPESEVSFRLKSDTNLF-EILK----SKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~v~~v~~spdg~~l~s~s 160 (513)
...++.|......... ..+.+. .+.. +......++|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~-------~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADG-------EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCC-------ccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4334445532111110 011111 1211 234477899999998766544
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=88.72 E-value=12 Score=39.18 Aligned_cols=148 Identities=12% Similarity=-0.065 Sum_probs=71.4
Q ss_pred cCCCEEEEEeCC--CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC---CeEEEEecCCCCCcceE
Q 010302 5 VDGLLCCSISND--KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS---SFVHIYDARADSNEPLI 79 (513)
Q Consensus 5 ~dg~~las~s~D--~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d---~~I~iwd~~~~~~~~i~ 79 (513)
-+|+..+.||.+ .++..||..+.+....-.+.........+ .-++. +.+.|+.+ ..+..||........+.
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~--IYviGG~~~~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNV--IYVIGGHSETDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCE--EEEecCcCCCCccEEEEeCCCCEEEeCC
Confidence 467777778753 45778887665443322222111111111 12333 55555543 34678888633333222
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+.........++ -+++..+.|+ .+.++|+++.+. . .+..+.........+.+ +|+..+.|
T Consensus 393 ~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W-------~-----~~~~m~~~r~~~~~~v~--~~~IYviG 453 (480)
T PHA02790 393 STYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTW-------T-----LIDDPIYPRDNPELIIV--DNKLLLIG 453 (480)
T ss_pred CCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcE-------e-----EcCCCCCCccccEEEEE--CCEEEEEC
Confidence 2221111222222 3566666664 467788866432 1 11111111112223333 77777888
Q ss_pred eCC-----CcEEEEEcCCCeE
Q 010302 160 SPD-----RRIRVFWFRTGKL 175 (513)
Q Consensus 160 s~D-----~~I~iwd~~tg~~ 175 (513)
+.+ ..+..||..+.+.
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CcCCCcccceEEEEECCCCeE
Confidence 754 4577888877665
No 449
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.66 E-value=23 Score=33.77 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=75.5
Q ss_pred CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 38 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 38 ~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
....+..+.|+|+.+ .+++-.+...-.||=-. .++.++++. ..-..--.+.|.-++++.++--.++.+.++.+..
T Consensus 84 ~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~--~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 84 ETANVSSLTYNPDTR--TLFAVTNKPAAIVELTK--EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccceeeCCCcc--eEEEecCCCceEEEEec--CCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 345588999999988 45554455555555433 788888876 1122335678877777777777788888775533
Q ss_pred CCCCCcceeeeecC-CccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 117 LQFPESEVSFRLKS-DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
... ..+.+. .-.+....+.+...-.++|+|..+.|..+=.-.-+.||.+.
T Consensus 160 ~t~-----~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 160 DTT-----VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred Ccc-----EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 211 001111 01111122224457789999998888777666667776554
No 450
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.49 E-value=2.9 Score=42.30 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=53.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc----------------ceEEEEeCCCCe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK----------------AGLAISDRNSSF 64 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~----------------~~~l~s~~~d~~ 64 (513)
|..+|++++.|+...-|.|.++|+.++..+++.+ ......+.|+....... .++++-.-.-+.
T Consensus 313 i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~ 391 (415)
T PF14655_consen 313 ICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGI 391 (415)
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCe
Confidence 4678999988887777999999999887776654 11223455554433222 124556667788
Q ss_pred EEEEecCCCCCcceEEee
Q 010302 65 VHIYDARADSNEPLISKK 82 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~ 82 (513)
|.||.++ ++..+..+.
T Consensus 392 lEvW~~~--~g~Rv~a~~ 407 (415)
T PF14655_consen 392 LEVWSMR--QGPRVAAFN 407 (415)
T ss_pred EEEEecC--CCCEEEEEE
Confidence 9999998 666665554
No 451
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=88.45 E-value=18 Score=35.93 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=74.0
Q ss_pred CeEecCCCEEEEE--eCC---CcEEEEEccCCceeEEEEcCCCCCc---EEEEEEc-CCCcceEEEEeCCCCeEEEEecC
Q 010302 1 MQVSVDGLLCCSI--SND---KSVKIYDVVNYDMMLMIRLPFIPGA---VEWVYKQ-GDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 1 v~~s~dg~~las~--s~D---~~v~iwd~~~~~~~~~~~l~~~~~~---v~~v~~s-~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
+.|++|++.|+.. +.+ ..+.+.|..++.......-. ..+. -....+. +++..++.++. .+|--+||-+.
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~ 266 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYD 266 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEE
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEc
Confidence 4688888833333 333 34566788776654433311 1111 1233343 66666555555 66666665544
Q ss_pred CCCCcceEEeecCCCCeEE-EEEcCCCCEE-EEEcCCC--cEEEe--cCCCCCCCCcceeeeecCCccccccccCCcceE
Q 010302 72 ADSNEPLISKKVHMGPVKV-MRYNPVFDTV-ISADDKG--IIEYW--SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 145 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~-l~~sp~~~~l-~s~s~dg--~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (513)
. .+.....+....-.|.. +.|+++++.+ .++..++ .-.+| ++.. +..+..+......-.
T Consensus 267 ~-~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~--------------~~~~~~LT~~~~~~~ 331 (353)
T PF00930_consen 267 L-DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS--------------GGEPKCLTCEDGDHY 331 (353)
T ss_dssp T-TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE--------------TTEEEESSTTSSTTE
T ss_pred c-cccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC--------------CCCeEeccCCCCCce
Confidence 2 33345566666677755 7788887765 4555432 33344 3330 122333333222227
Q ss_pred EEEEcCCCCEEEEEe
Q 010302 146 AIEVSPDGKQFSITS 160 (513)
Q Consensus 146 ~v~~spdg~~l~s~s 160 (513)
.+.|||+|++++..+
T Consensus 332 ~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 332 SASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEE-TTSSEEEEEE
T ss_pred EEEECCCCCEEEEEE
Confidence 999999999887544
No 452
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.42 E-value=4.2 Score=37.11 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=62.2
Q ss_pred EEEEEcCCCCEE-EEEcCCCcEEEec--CCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 010302 89 KVMRYNPVFDTV-ISADDKGIIEYWS--PHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 165 (513)
Q Consensus 89 ~~l~~sp~~~~l-~s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I 165 (513)
..++|+.+.+.+ +.-+.+-+|.-|| ..++.+......|+.+..++...+ ..-.+++..+|++.++.-..++|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-----~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-----EPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-----CCCcceEccCCcEEEEEecCcEE
Confidence 568898877766 4555666787786 777776665556665544332222 23356667788888888888999
Q ss_pred EEEEcCCCeEEEEeccc
Q 010302 166 RVFWFRTGKLRRVYDES 182 (513)
Q Consensus 166 ~iwd~~tg~~~~~~~~~ 182 (513)
..+|..+|+.+..+.-.
T Consensus 236 ~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLP 252 (310)
T ss_pred EEECCCCCcEEEEEEcC
Confidence 99999999999887643
No 453
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.97 E-value=31 Score=38.19 Aligned_cols=173 Identities=12% Similarity=0.089 Sum_probs=88.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCC----------CCCcEEEEEEcCCCcceEEEEeC----------CCCeEE
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPF----------IPGAVEWVYKQGDVKAGLAISDR----------NSSFVH 66 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~----------~~~~v~~v~~s~~~~~~~l~s~~----------~d~~I~ 66 (513)
+..+..++.|+.+.-.|.++|+.+..+..++ .+..-..+..+|--....++.++ -++.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4577778889999999999999876543211 00000011111210011333332 157899
Q ss_pred EEecCCCCCcceEEeecC-C----------------CCe-EEEEEcCCCCEEEEEcCCCcEEEecCCC----CCCCCcce
Q 010302 67 IYDARADSNEPLISKKVH-M----------------GPV-KVMRYNPVFDTVISADDKGIIEYWSPHT----LQFPESEV 124 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h-~----------------~~V-~~l~~sp~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~ 124 (513)
-+|.+ +++.+-.+..- . ..+ ..++++|...++..+.....-..|.-.. .......+
T Consensus 340 A~Da~--TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 340 AFDVN--TGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEECC--CCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 99998 78777766411 0 001 2334455444444433222222221100 01112233
Q ss_pred eeeecCCcccccccc--CC-------cceEEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 125 SFRLKSDTNLFEILK--SK-------TTVSAIEVSP-DGK---QFSITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~--~~-------~~v~~v~~sp-dg~---~l~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
..+.++++..-.++. |. ....-+.+.. +|+ .++.++.+|.+.+.|-+||+.+...++
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 344445554433332 21 1122223333 664 788889999999999999999887654
No 454
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.85 E-value=2.3 Score=47.22 Aligned_cols=143 Identities=10% Similarity=0.040 Sum_probs=82.0
Q ss_pred EecCCCEEEEE--eCCCcEEEEEccCCceeE---EEEcC------CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 3 VSVDGLLCCSI--SNDKSVKIYDVVNYDMML---MIRLP------FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 3 ~s~dg~~las~--s~D~~v~iwd~~~~~~~~---~~~l~------~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
.++|+...+.. +.+-.|..||+++..... ..-+. .......++.|.|.-.. ..+.+..|..|++..+.
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dlsl~V~~~~ 186 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDLSLRVKSTK 186 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhccccchhhhhhh
Confidence 45676665444 345578899997644322 11011 11223445566665432 34555677888887764
Q ss_pred CCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEc
Q 010302 72 ADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVS 150 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s 150 (513)
. ....+..+ .-....++++|+|.|+.++.|...|++.-|-..- ++ ...+..... ....|.+|+|-
T Consensus 187 ~-~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-ei-----------k~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 187 Q-LAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EI-----------KSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred h-hhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccc-ce-----------eecccCCCcCCCcceeEEEEe
Confidence 1 11222222 3445689999999999999999999988774311 10 001111111 14578999997
Q ss_pred CCCCEEEEEe
Q 010302 151 PDGKQFSITS 160 (513)
Q Consensus 151 pdg~~l~s~s 160 (513)
..-.++++-+
T Consensus 253 ~t~eflvvy~ 262 (1405)
T KOG3630|consen 253 STQEFLVVYG 262 (1405)
T ss_pred cceeEEEEec
Confidence 7777776543
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=29 Score=37.31 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=39.9
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHH-HHHHHhcCCC
Q 010302 141 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE-VAQDLQRSDA 194 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~-~i~~~~~~~~ 194 (513)
.+.+..+..||+.++|+--..+|.|.+-+....+++..++-... .-..+.|.++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 45688899999999999999999999998887777666652221 1225666555
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=14 Score=39.55 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=37.8
Q ss_pred CCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC
Q 010302 62 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 115 (513)
Q Consensus 62 d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~ 115 (513)
-..|+|++. +|..+.++.-....+..+.|+.+.. |+....+|++.+++.-
T Consensus 63 ~~~I~If~~---sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 63 RPYIRIFNI---SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL 112 (829)
T ss_pred ceeEEEEec---cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc
Confidence 345889988 6777777664445888999987765 5567789999999874
No 457
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.68 E-value=36 Score=32.98 Aligned_cols=146 Identities=13% Similarity=-0.004 Sum_probs=69.5
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE--
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS-- 80 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~-- 80 (513)
-++||+++|.++.-....-||--...-...-+ .....+..+.|.+++. +.+.+ ..+.|+.=+.. ...+....
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~~~~--lw~~~-~Gg~~~~s~~~-~~~~~w~~~~ 225 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSPDGN--LWMLA-RGGQIQFSDDP-DDGETWSEPI 225 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS---EEEEE-TTTEEEEEE-T-TEEEEE---B
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecCCCC--EEEEe-CCcEEEEccCC-CCcccccccc
Confidence 46899999887665556677753211111111 2457899999999865 33332 66778776621 01111111
Q ss_pred --eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 81 --KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 --~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
+......+..++|.++....++|+.. ++.+ ....++- -+.......-.+-.+.|.|.++.+-++.
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~-S~DgGkt-----------W~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLV-STDGGKT-----------WQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEESTT--EEE-ESSTTSS------------EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred CCcccCceeeEEEEecCCCCEEEEeCCc-cEEE-eCCCCcc-----------ceECccccCCCCceEEEEEcCCCceEEE
Confidence 11223347899999998888877654 4432 2322221 1111112223345778888766666665
Q ss_pred EeCCCcEEEE
Q 010302 159 TSPDRRIRVF 168 (513)
Q Consensus 159 ~s~D~~I~iw 168 (513)
| .+|.|.-|
T Consensus 293 G-~~G~ll~~ 301 (302)
T PF14870_consen 293 G-QDGVLLRY 301 (302)
T ss_dssp --STTEEEEE
T ss_pred C-CCcEEEEe
Confidence 4 57766544
No 458
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.52 E-value=33 Score=32.36 Aligned_cols=131 Identities=17% Similarity=0.130 Sum_probs=71.6
Q ss_pred CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC--C---CCeE
Q 010302 15 NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH--M---GPVK 89 (513)
Q Consensus 15 ~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h--~---~~V~ 89 (513)
.++...+||..+.+.+..+..+ +.-+.++ .+++. +++|. ....+.++|.. +.+...+++.. . ..+.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~-Li~SD-GS~~L~~~dP~--~f~~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKR-LIMSD-GSSRLYFLDPE--TFKEVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSC-EEEE--SSSEEEEE-TT--T-SEEEEEE-EETTEE---EE
T ss_pred cCCeEEEEccccceEEEEEecC---CcceEEE--cCCCE-EEEEC-CccceEEECCc--ccceEEEEEEEECCEECCCcE
Confidence 5788999999999988887754 3445555 34442 44444 35689999987 77777766522 2 2345
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc------ccCCcceEEEEEcCCCCEEEEEe
Q 010302 90 VMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI------LKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 90 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~v~~spdg~~l~s~s 160 (513)
.+.|- +|...|-.-....|-..|+.+++.... .+. ....... .....-.+.||+.|..+.|...+
T Consensus 179 ELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~---iDl--s~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 179 ELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW---IDL--SGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE---EE---HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE---EEh--hHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 56664 566656555666666677777653111 010 0001100 01134578999999777655444
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.03 E-value=4.4 Score=43.08 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=32.0
Q ss_pred cceEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCeEEEEeccc
Q 010302 142 TTVSAIEVSP----DGKQFSITSPDRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 142 ~~v~~v~~sp----dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~ 182 (513)
..+..+++++ +..++++.+.|+++|+||+.+++++.+.+-.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4466677777 7789999999999999999999998887654
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.57 E-value=3 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=25.5
Q ss_pred CCeEEEEEcCC-C--CEEEEEcCCCcEEEecCCC
Q 010302 86 GPVKVMRYNPV-F--DTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 86 ~~V~~l~~sp~-~--~~l~s~s~dg~i~iwd~~~ 116 (513)
+.|.++.|+|. + ++|+.+-.-+.+.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36889999984 4 5888888889999999984
No 461
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.32 E-value=20 Score=34.55 Aligned_cols=146 Identities=7% Similarity=0.052 Sum_probs=77.9
Q ss_pred cEEEEEccCCceeEEEEcCCC----CCcEEEEEEcCCC----cceEEEEeCCCCeEEEEecCCCCCcceEEeecCC----
Q 010302 18 SVKIYDVVNYDMMLMIRLPFI----PGAVEWVYKQGDV----KAGLAISDRNSSFVHIYDARADSNEPLISKKVHM---- 85 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~----~~~v~~v~~s~~~----~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~---- 85 (513)
.|-+||+.+.+.++.+.++.. ......+...... .....++.+..+-|.|+|+. +++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~--~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLA--TGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETT--TTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEcc--CCcEEEEecCCcceec
Confidence 688999999999998887643 2346666655422 24477787888899999997 555544443221
Q ss_pred ---------------CCeEEEEEcC---CCCEEEEEcCCCcEEEecC-----CCCCCCCcceeeeecCCccccccccC-C
Q 010302 86 ---------------GPVKVMRYNP---VFDTVISADDKGIIEYWSP-----HTLQFPESEVSFRLKSDTNLFEILKS-K 141 (513)
Q Consensus 86 ---------------~~V~~l~~sp---~~~~l~s~s~dg~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 141 (513)
..+..++.+| +++.|.-....+. ++|.+ ++...... ......+..+ +. .
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~-----~~~~~~v~~l-G~k~ 185 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDA-----QALASQVQDL-GDKG 185 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HH-----H-HHHT-EEE-EE--
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCcccccc-----ccccccceec-cccC
Confidence 1234444443 3333332221111 11111 11100000 0000011111 22 2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010302 142 TTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t 172 (513)
+....++.+++|..+.+--..+.|..|+..+
T Consensus 186 ~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 186 SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred CCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 3566789999999888888899999999875
No 462
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.61 E-value=7.1 Score=35.91 Aligned_cols=86 Identities=8% Similarity=-0.008 Sum_probs=55.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEc
Q 010302 149 VSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 228 (513)
Q Consensus 149 ~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd 228 (513)
+..++++|++.+.+|.+++||+.+++++..-. +...+........ ......+..+..+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~---------------------~~~~~~i~~~~lt 75 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSD---------------------KSSSPNITSCSLT 75 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhccccccc---------------------CCCCCcEEEEEEc
Confidence 44588899999999999999999998854321 1211111100000 0122344566778
Q ss_pred CCCCEEEEccccceEEEEcccCcEEEEe
Q 010302 229 ESSNFLIYATLLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 229 ~~g~~li~~s~~gi~v~d~~t~~~v~~~ 256 (513)
.+|.-|+.-+......||..-+..+++.
T Consensus 76 ~~G~PiV~lsng~~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 76 SNGVPIVTLSNGDSYSYSPDLGCWIRVS 103 (219)
T ss_pred CCCCEEEEEeCCCEEEeccccceeEEec
Confidence 8888888777767888888877777775
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.23 E-value=6.7 Score=24.80 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=25.8
Q ss_pred cCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCCC
Q 010302 5 VDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFIP 39 (513)
Q Consensus 5 ~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~~ 39 (513)
|+|++|..+. .+++|.++|..+++.+..+....++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC
Confidence 6777666655 5889999999988887777654333
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.21 E-value=95 Score=35.84 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=79.6
Q ss_pred CCCeEEEEecCCCCCcceEEeecCCCCeEEEEE--------cCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCc
Q 010302 61 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRY--------NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 132 (513)
Q Consensus 61 ~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~--------sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (513)
.|+.+.+|+.. ++.....+.+-...|..+.. .|.=++++....--.|.++-+.-.+.+...-.| .
T Consensus 97 iDn~L~lWny~--~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f-----~ 169 (1311)
T KOG1900|consen 97 IDNNLFLWNYE--SDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF-----N 169 (1311)
T ss_pred eCCeEEEEEcC--CCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-----c
Confidence 46789999998 55556666665666666543 333334443333344555533211111000000 0
Q ss_pred cccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC----C---CeEEEEecccHHHHHHHhcCCCCcccccccccc
Q 010302 133 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR----T---GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 205 (513)
Q Consensus 133 ~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~----t---g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 205 (513)
....+......|.++....+|+.+.+| .|| .+|.+. + ++.-+.+.-....+..+-.+ +..+.
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---~~~~~----- 238 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---LLSVP----- 238 (1311)
T ss_pred cceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh---hhcCC-----
Confidence 012222335568899988899988865 455 455432 1 11111222112222111111 11111
Q ss_pred ceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEccc
Q 010302 206 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 249 (513)
Q Consensus 206 ~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t 249 (513)
.....++..+..|.+.+.+..-+..+ |++||+..
T Consensus 239 ----------~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 ----------GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ----------CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 01123556778887777666656555 89999976
No 465
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.15 E-value=62 Score=33.74 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=67.8
Q ss_pred CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC---CCeEEEE
Q 010302 16 DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM---GPVKVMR 92 (513)
Q Consensus 16 D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~---~~V~~l~ 92 (513)
.....+.|.. |..+..+......... +...+++. +++... ..+..+|+ .++.+....... ..-..+.
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~--~~~l~nG~--ll~~~~--~~~~e~D~---~G~v~~~~~l~~~~~~~HHD~~ 196 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNS--FKQLPNGN--LLIGSG--NRLYEIDL---LGKVIWEYDLPGGYYDFHHDID 196 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SS--EEE-TTS---EEEEEB--TEEEEE-T---T--EEEEEE--TTEE-B-S-EE
T ss_pred CceEEEECCC-ccEEEEEccCccccce--eeEcCCCC--EEEecC--CceEEEcC---CCCEEEeeecCCcccccccccE
Confidence 3445555553 3444333332221111 44556666 555444 67888888 455555544221 1134567
Q ss_pred EcCCCCEEEEEc--------------CCCcEEEecCCCCCCCCcceeeeecCCc--------------cccccccCCc--
Q 010302 93 YNPVFDTVISAD--------------DKGIIEYWSPHTLQFPESEVSFRLKSDT--------------NLFEILKSKT-- 142 (513)
Q Consensus 93 ~sp~~~~l~s~s--------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-- 142 (513)
.-|+|++|+.+. .|. |..+| .+++. ...|++..-- ..........
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~v---v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEV---VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-E---EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCE---EEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 779999887776 222 33334 44332 1222222100 0000011222
Q ss_pred ceEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEecccH
Q 010302 143 TVSAIEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESL 183 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~-D~~I~iwd~~tg~~~~~~~~~~ 183 (513)
.++++.+.+....|+..+. -..|...|.++++....+..+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 3889999995555554454 5588888999999988886543
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.81 E-value=4.6 Score=25.30 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=19.9
Q ss_pred CCcceEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 010302 140 SKTTVSAIEVSPDGKQFSITS-PD--RRIRVF 168 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s-~D--~~I~iw 168 (513)
....-...+|||||+.|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999988665 45 666665
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.60 E-value=35 Score=35.15 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=26.5
Q ss_pred ceEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCeEEE
Q 010302 143 TVSAIEVSPDG---KQFSITSPDRRIRVFWFRTGKLRR 177 (513)
Q Consensus 143 ~v~~v~~spdg---~~l~s~s~D~~I~iwd~~tg~~~~ 177 (513)
.+..++|+|+. ..|..-+.|.+||+||+..-+.+.
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 35678899975 567777889999999987765543
No 468
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=80.83 E-value=12 Score=30.75 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=55.3
Q ss_pred CEEEEEeCCeEEEEEeCCCCChHHHHHHHHhh----hccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCc-ccc
Q 010302 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHC----RNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFE-DEF 432 (513)
Q Consensus 358 ~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~----~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~-~e~ 432 (513)
+++.|......+.++|+.. .|++.|++.. +-..|-+-.+++. | ..++ ++.
T Consensus 1 mkI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~E~y~~~-p---------------------~~l~~~~~ 55 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGNEKYFSL-P---------------------LKLPTEEN 55 (120)
T ss_dssp EEEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTTEEEEE--S--------------------------SSS
T ss_pred CeEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCceEEEeC-C---------------------CCCCcccC
Confidence 3566777778899999977 7888888764 1122322111111 1 1111 111
Q ss_pred ccCCCCCCceEEEEeccCCCCCCceEEEEecCCC-------CCCCCCeEEEEEEcCHHHHHHHhc
Q 010302 433 HKSLRHDRPFTVSMANAGPNTNGSQFFITTVATP-------WLDNKHTVFGRVIKGMDVVQAIEK 490 (513)
Q Consensus 433 ~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~-------~ld~~~~vfG~V~~G~~~l~~i~~ 490 (513)
.. .-...|.|+.-..+.+ |-|-+++.| .+-....++|||.+|.+.+.++..
T Consensus 56 -~~-~~~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 56 -PR-SSVEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -EE-SSB-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred -cc-ccccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 11 1235578888655433 777787775 344668999999999988777643
No 469
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.52 E-value=50 Score=30.84 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=78.6
Q ss_pred EEEEecCCCCCcceEEee-cCCCCeEEEEEcCCCCEEEEEcC-C--CcEEEecCCCCCCCCcceeeeecCCccccccccC
Q 010302 65 VHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADD-K--GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 140 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (513)
-.+||+. +.+ ++.+. ....-+.+-++-++|+++.+|+. + ..+++++..+..- .. .|. +.... ...
T Consensus 48 s~~yD~~--tn~-~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~-~~--~w~----e~~~~-m~~ 116 (243)
T PF07250_consen 48 SVEYDPN--TNT-FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDG-TC--DWT----ESPND-MQS 116 (243)
T ss_pred EEEEecC--CCc-EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCC-CC--Cce----ECccc-ccC
Confidence 4578986 332 23333 22333444567789999988874 3 3477886643000 00 000 00001 122
Q ss_pred CcceEEEEEcCCCCEEEEEeCCC-cEEEEEcCCC-eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccC
Q 010302 141 KTTVSAIEVSPDGKQFSITSPDR-RIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE 218 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~D~-~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~ 218 (513)
..|--++.--|||+.|+.|+.+. +..+|.-+.. .....+. .+.... . ...
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~----~l~~~~---------------------~---~~~ 168 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLP----FLSQTS---------------------D---TLP 168 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeee----cchhhh---------------------c---cCc
Confidence 33445566678999999888662 2333332110 0000000 000000 0 000
Q ss_pred CCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCC
Q 010302 219 TAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGK 258 (513)
Q Consensus 219 ~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~ 258 (513)
....-.+-.-|+|+.++.+... -.++|..++++++.+-.
T Consensus 169 ~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 169 NNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred cccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEeeCCC
Confidence 1112244567899999888764 57889999998888754
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.82 E-value=34 Score=30.07 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=28.6
Q ss_pred cceEEEEEcCCC------CEEEEEeCCCcEEEEEcC---CCeEEEEe
Q 010302 142 TTVSAIEVSPDG------KQFSITSPDRRIRVFWFR---TGKLRRVY 179 (513)
Q Consensus 142 ~~v~~v~~spdg------~~l~s~s~D~~I~iwd~~---tg~~~~~~ 179 (513)
..+.+++|||.| ..||+-..++.|.||... .++.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~ 132 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVA 132 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeee
Confidence 378999999944 378888899999999876 44554443
No 471
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.43 E-value=51 Score=33.41 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=87.9
Q ss_pred EeCCCcEEEEEccCC--ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE--eecCCCCe
Q 010302 13 ISNDKSVKIYDVVNY--DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS--KKVHMGPV 88 (513)
Q Consensus 13 ~s~D~~v~iwd~~~~--~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~--~~~h~~~V 88 (513)
|-..|.+.=|.+... +....+.. ...+.+.++.||+|.+ +++.--.+++|.+++...+..+.... .+.....|
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I 115 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANI 115 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchhhHHHHHhccCccee
Confidence 344455666766532 22222222 2346899999999998 88888889999999985333333322 22444568
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe--CCCcEE
Q 010302 89 KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS--PDRRIR 166 (513)
Q Consensus 89 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s--~D~~I~ 166 (513)
....|+.+ .-++-.+..| +.+|.+... ...+...+.|+..|.-..|+++-+.+.-++ ..+++.
T Consensus 116 lGF~W~~s-~e~A~i~~~G-~e~y~v~pe-------------krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln 180 (657)
T KOG2377|consen 116 LGFCWTSS-TEIAFITDQG-IEFYQVLPE-------------KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN 180 (657)
T ss_pred EEEEEecC-eeEEEEecCC-eEEEEEchh-------------hhhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence 88899766 4444444444 555633221 122444556778888899999888654333 456666
Q ss_pred EEEcCCCeE
Q 010302 167 VFWFRTGKL 175 (513)
Q Consensus 167 iwd~~tg~~ 175 (513)
=+-++++..
T Consensus 181 pf~~~~~~v 189 (657)
T KOG2377|consen 181 PFHFRAGTM 189 (657)
T ss_pred cEEEeecee
Confidence 666666544
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.42 E-value=61 Score=31.19 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=100.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEcc------CCceeEEEEcCCC-----CCcEEEEEEcCCCc----------ceEEEEe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVV------NYDMMLMIRLPFI-----PGAVEWVYKQGDVK----------AGLAISD 59 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~------~~~~~~~~~l~~~-----~~~v~~v~~s~~~~----------~~~l~s~ 59 (513)
|+++|.+.+.++...-++..+||.. ..+. ....++.. +.....+.|..... ...++-+
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~-L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDP-LVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccc-eEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 5789999999988888999999996 1111 22333321 12344444442211 1235667
Q ss_pred CCCCeEEEEecCCCCC---cceEEee-cCCCCe-EEEEEcC--CCCEEEEEc-CCCcEEEecCCCCC-----------CC
Q 010302 60 RNSSFVHIYDARADSN---EPLISKK-VHMGPV-KVMRYNP--VFDTVISAD-DKGIIEYWSPHTLQ-----------FP 120 (513)
Q Consensus 60 ~~d~~I~iwd~~~~~~---~~i~~~~-~h~~~V-~~l~~sp--~~~~l~s~s-~dg~i~iwd~~~~~-----------~~ 120 (513)
++|++|.-|....... .....+. .....| ..+++.. .+++|..+. ..++|.++|-.=.+ +|
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iP 186 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALP 186 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCC
Confidence 8999999998642222 1122222 112233 3455543 466775555 67889999642111 12
Q ss_pred Cc-------------ceeeeec---------------------CCccccccc--cCCcceEEEEEcC------CCCEEEE
Q 010302 121 ES-------------EVSFRLK---------------------SDTNLFEIL--KSKTTVSAIEVSP------DGKQFSI 158 (513)
Q Consensus 121 ~~-------------~~~~~~~---------------------~~~~~~~~~--~~~~~v~~v~~sp------dg~~l~s 158 (513)
.. -+.|..+ .+..++.+. +.-...+.|+..| .|.+|+-
T Consensus 187 agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVG 266 (336)
T TIGR03118 187 AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVG 266 (336)
T ss_pred CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEe
Confidence 11 1112222 122222222 1224466777755 5667776
Q ss_pred EeCCCcEEEEEcCCCeEEEEecc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
--.||+|..||..+|+.+..+..
T Consensus 267 NFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 267 NFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred ecCCceeEEecCCCCceeeeecC
Confidence 56799999999999998877654
No 473
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=79.25 E-value=1.1e+02 Score=34.16 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=47.8
Q ss_pred CcCccCCCCCccccccccccCCCccCCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeC-cE
Q 010302 329 GRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKG-FM 407 (513)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~-~~ 407 (513)
.||.+++=-++-+. ...++....++.|.+.+-.++..++.--+++.---.+.||-|-.+.+-..+ ++
T Consensus 908 ArD~~p~Wmtavei------------l~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv 975 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEI------------LDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLV 975 (1096)
T ss_pred ehhhCccceeeEEE------------ecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceE
Confidence 57766654444333 344567778899999998888889888888766666778888876665555 34
Q ss_pred EE
Q 010302 408 IQ 409 (513)
Q Consensus 408 iq 409 (513)
+|
T Consensus 976 ~~ 977 (1096)
T KOG1897|consen 976 MQ 977 (1096)
T ss_pred ee
Confidence 44
No 474
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.03 E-value=65 Score=35.39 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCcceEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 010302 140 SKTTVSAIEVSPD---GKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 140 ~~~~v~~v~~spd---g~~l~s~s~D~~I~iwd~~t 172 (513)
+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 4456888889885 46788888899999999865
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=78.71 E-value=27 Score=33.59 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=82.5
Q ss_pred cceeeeecCCccccccc------cCCcceEEEEEcCCCC----EEE--EEeCCCcEEEEEcCCCeEEEEecccHHHHHHH
Q 010302 122 SEVSFRLKSDTNLFEIL------KSKTTVSAIEVSPDGK----QFS--ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL 189 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~~------~~~~~v~~v~~spdg~----~l~--s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~ 189 (513)
..+.|+.++++.++.+. ...+....+.+..... .+| +=+..+-|.|+|+.+++..+.+..+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~---- 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP---- 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT----
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce----
Confidence 34445555455444332 1345678888866321 333 3334568999999999998888763211
Q ss_pred hcCCC-CccccccccccceeeeeeeccccCCCCCCceEEc---CCCCEEEEccccceEEEEcccCcEEEEeCCCCccchh
Q 010302 190 QRSDA-PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD---ESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRF 265 (513)
Q Consensus 190 ~~~~~-~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd---~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~ 265 (513)
.+. ..+.+. +. .+... .....++.+ ++|+.|.|....+-+++-+.|.-+. --...+...-.
T Consensus 111 --~p~~~~~~i~----g~------~~~~~--dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~-~~~~~~~~~~~ 175 (287)
T PF03022_consen 111 --DPDAGPFTIG----GE------SFQWP--DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLR-DPSLSDAQALA 175 (287)
T ss_dssp --S-SSEEEEET----TE------EEEET--TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHC-STT--HHH-HH
T ss_pred --eccccceecc----Cc------eEecC--CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhh-Ccccccccccc
Confidence 110 001111 11 11111 113345554 4888899888877777766543211 00000100000
Q ss_pred heeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 266 LRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
-.+..+..+.. ....+.| .+++.|+.+-.+.+.|+.|+...|.
T Consensus 176 ~~v~~lG~k~~--~s~g~~~-----------D~~G~ly~~~~~~~aI~~w~~~~~~ 218 (287)
T PF03022_consen 176 SQVQDLGDKGS--QSDGMAI-----------DPNGNLYFTDVEQNAIGCWDPDGPY 218 (287)
T ss_dssp HT-EEEEE-----SECEEEE-----------ETTTEEEEEECCCTEEEEEETTTSB
T ss_pred ccceeccccCC--CCceEEE-----------CCCCcEEEecCCCCeEEEEeCCCCc
Confidence 01111111110 1112222 2689999999999999999877655
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.42 E-value=1.2e+02 Score=34.98 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=52.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecC----CCCCCCCcceeee-------ecCCccccccc-cCCcceEEEEEc
Q 010302 83 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSP----HTLQFPESEVSFR-------LKSDTNLFEIL-KSKTTVSAIEVS 150 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~----~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~v~~v~~s 150 (513)
.....|.|+....+|+.|++|-.+ .+|.+ ..+..-...-+.. .-... +..+. .+..+|..+++.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEec
Confidence 335568899988899888877655 34532 1111100000000 00111 22223 567889999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC
Q 010302 151 PDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 151 pdg~~l~s~s~D~~I~iwd~~t 172 (513)
..-+.+.+-+..++|++||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 7777888888999999999976
No 477
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.39 E-value=0.44 Score=47.84 Aligned_cols=141 Identities=12% Similarity=0.132 Sum_probs=90.2
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|-+++.-++.++.+..+..||-.. +...... .++.+..++|..++.. +++.+-..+.+.+||+.. +....+
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n---~tg~aldm~wDkegdv-lavlAek~~piylwd~n~---eytqqL 112 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAG-QVILELN---PTGKALDMAWDKEGDV-LAVLAEKTGPIYLWDVNS---EYTQQL 112 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhc-ceecccC---CchhHhhhhhccccch-hhhhhhcCCCeeechhhh---hhHHHH
Confidence 4667776688888888888888753 2222222 4466667777776664 444555677899999962 222222
Q ss_pred e-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 82 K-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 82 ~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
. +....-.-+.|++.+..++.+-..+.+.|++..+ .......-+|...+.+++|.+.+..+. ++
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt--------------sR~iiv~Gkh~RRgtq~av~lEd~vil-~d 177 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT--------------SRRIIVMGKHQRRGTQIAVTLEDYVIL-CD 177 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccc--------------hhhhhhhcccccceeEEEecccceeee-cC
Confidence 2 1112222378999888888888889999997755 222334444888899999999886654 34
Q ss_pred CCCcE
Q 010302 161 PDRRI 165 (513)
Q Consensus 161 ~D~~I 165 (513)
.|..+
T Consensus 178 cd~~L 182 (615)
T KOG2247|consen 178 CDNTL 182 (615)
T ss_pred cHHHH
Confidence 44443
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.00 E-value=21 Score=35.90 Aligned_cols=154 Identities=13% Similarity=0.125 Sum_probs=83.2
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCc----EE-EEEEcCCCcceEEEEeCCCCeEEEE-ecCCCCCc
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGA----VE-WVYKQGDVKAGLAISDRNSSFVHIY-DARADSNE 76 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~----v~-~v~~s~~~~~~~l~s~~~d~~I~iw-d~~~~~~~ 76 (513)
..|||+.|..-+. ..+.|+++.+.......-.+..++. +. .......+. -+...+.||.|.-| |++.+.+.
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~--SLLv~~~dG~vsQWFdvr~~~~p 304 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF--SLLVVHEDGLVSQWFDVRRDGQP 304 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce--eEEEEcCCCceeeeeeeecCCCC
Confidence 5689998776554 6788888876443222111111221 10 011111122 34556678888665 66532222
Q ss_pred ceE---EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLI---SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~---~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
... .++-...++..+.-..+.+-+++-+..|++..+.... ++..-+...-..+..+++||.+
T Consensus 305 ~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~---------------~~~lL~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 305 HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS---------------EKLLLFERAYQAPQLVAMSPNQ 369 (733)
T ss_pred cceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc---------------CcceehhhhhcCcceeeeCccc
Confidence 222 2222223444444334556788888888888774422 1111111222256678999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeE
Q 010302 154 KQFSITSPDRRIRVFWFRTGKL 175 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~tg~~ 175 (513)
.++++- ..|.|+++.+++...
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred chheee-cCCceEEEEecCCCC
Confidence 999863 467899998876544
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=77.87 E-value=72 Score=31.13 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCc----EEEecCCC
Q 010302 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI----IEYWSPHT 116 (513)
Q Consensus 63 ~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~----i~iwd~~~ 116 (513)
..+..||+.....+.+..+... ......+..-++++.+.|+.++. +.++|+.+
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 4578888864344333322211 11112222335667777776542 34566655
No 480
>PHA02790 Kelch-like protein; Provisional
Probab=77.74 E-value=49 Score=34.55 Aligned_cols=106 Identities=8% Similarity=-0.110 Sum_probs=50.7
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC--CeEEEEecCCCCCcce
Q 010302 6 DGLLCCSISND-----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS--SFVHIYDARADSNEPL 78 (513)
Q Consensus 6 dg~~las~s~D-----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d--~~I~iwd~~~~~~~~i 78 (513)
++.+++.||.+ .++..||..+.+....-.+.........+. -++. +.+.|+.+ ..+..||........+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~--iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNK--LYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCE--EEEECCcCCCCceEEEECCCCeEEEC
Confidence 45566777754 256678887655433322221111111111 2333 44555432 4577888753223333
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCC---cEEEecCCCC
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKG---IIEYWSPHTL 117 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~ 117 (513)
..+.........++ -+++..+.|+.++ .+..||+++.
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCC
Confidence 23321121222222 2677777777553 4667777653
No 481
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.09 E-value=89 Score=31.78 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 140 SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
.+++|.++.||+|.+.||+--.|.+|.++++.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI 96 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecC
Confidence 45689999999999999999999999999874
No 482
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=76.35 E-value=1.2e+02 Score=33.97 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|+| +.+.||.....|.-.||++........-. +-+.....|.| +.|.. ..
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~--------------------~~~~~~~~gsi-~~d~~--e~---- 203 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN--------------------LRLSRNISGSI-IFDPE--EL---- 203 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcc--------------------eeeccCCCccc-cCCCc--cc----
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
+.-..+.|.++.+.|+.++... +.++|+++.. ............+|..+.-+|+....+.-
T Consensus 204 ------s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~------------~~~~l~~~~~~~~IlDv~~~~~~~~~~Fi 264 (765)
T PF10214_consen 204 ------SNWKRILWVSDSNRLLVCNRSK-LMLIDFESNW------------QTEYLVTAKTWSWILDVKRSPDNPSHVFI 264 (765)
T ss_pred ------CcceeeEecCCCCEEEEEcCCc-eEEEECCCCC------------ccchhccCCChhheeeEEecCCccceEEE
Q ss_pred eCCCcEEEEEcCC----CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 160 SPDRRIRVFWFRT----GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 160 s~D~~I~iwd~~t----g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
-....|...++.+ .+.+..+.. ..+..|..-|+.+-.. .......+.|+.....+.
T Consensus 265 LTs~eiiw~~~~~~~~~~~~llSwkH----------------~~d~~D~tLrl~~~~~----~~~~~~~~lyS~~~~~v~ 324 (765)
T PF10214_consen 265 LTSKEIIWLDVKSSSEKLTRLLSWKH----------------FRDPEDPTLRLSVQKV----GDTDFVVFLYSRLNPLVY 324 (765)
T ss_pred EecCeEEEEEccCCCCCeeeeeeccc----------------ccCCCCCceEEEEEEc----CCCEEEEEEEcCCCCcEE
Q ss_pred E
Q 010302 236 Y 236 (513)
Q Consensus 236 ~ 236 (513)
.
T Consensus 325 v 325 (765)
T PF10214_consen 325 V 325 (765)
T ss_pred E
No 483
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.82 E-value=30 Score=37.50 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=67.2
Q ss_pred CCCEEEEEeCCCcEEEEEccC-------C----ce-e------EEEEcCCCCCcEEEEEEc--CCCcceEEEEeCCCCeE
Q 010302 6 DGLLCCSISNDKSVKIYDVVN-------Y----DM-M------LMIRLPFIPGAVEWVYKQ--GDVKAGLAISDRNSSFV 65 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~-------~----~~-~------~~~~l~~~~~~v~~v~~s--~~~~~~~l~s~~~d~~I 65 (513)
+.+.|+.|.+||.|.+|.+++ . +. . ..+.+ ..+..++.++++ .... ++|.+++...|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~r--lIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSR--LIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcce--EEEEecCCceE
Confidence 346788999999999997742 1 00 0 01111 123567888877 4444 88888888888
Q ss_pred EEEecCCCCCcceE-EeecCCCCeEEEEEcCCC---C---EEEEEcCCCcEEEecC
Q 010302 66 HIYDARADSNEPLI-SKKVHMGPVKVMRYNPVF---D---TVISADDKGIIEYWSP 114 (513)
Q Consensus 66 ~iwd~~~~~~~~i~-~~~~h~~~V~~l~~sp~~---~---~l~s~s~dg~i~iwd~ 114 (513)
.||-......+... .-..|...|.+|+|-++. . .+++++-.|.+-+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88865421111111 111366678899998743 2 7788999999888876
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.30 E-value=21 Score=31.34 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCC------CEEEEEcCCCcEEEecCC
Q 010302 86 GPVKVMRYNPVF------DTVISADDKGIIEYWSPH 115 (513)
Q Consensus 86 ~~V~~l~~sp~~------~~l~s~s~dg~i~iwd~~ 115 (513)
..|.+++|||.| .+|++...++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999954 478899999999999553
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.40 E-value=69 Score=33.01 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=34.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC-----CCCCcEEEEEEcCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP-----FIPGAVEWVYKQGDV 51 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~-----~~~~~v~~v~~s~~~ 51 (513)
|+|.|||++|++--..|.|++++-.++.......+. ...+....++++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 578999998887655799999987655432222221 124667889998774
No 486
>PLN02193 nitrile-specifier protein
Probab=73.29 E-value=99 Score=32.18 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=15.8
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCceeE
Q 010302 6 DGLLCCSISND-----KSVKIYDVVNYDMML 31 (513)
Q Consensus 6 dg~~las~s~D-----~~v~iwd~~~~~~~~ 31 (513)
++++.+.|+.+ ..+.+||+.+.+...
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~ 258 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL 258 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE
Confidence 44555666654 357788887755433
No 487
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.27 E-value=1.5e+02 Score=32.64 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEE
Q 010302 142 TTVSAIEVSPDGKQFSITSPDRRIRV 167 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s~s~D~~I~i 167 (513)
-.|..+.+||+|++++..+..+...+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 35889999999999998887554433
No 488
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.96 E-value=1e+02 Score=30.40 Aligned_cols=106 Identities=14% Similarity=0.014 Sum_probs=53.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce-eEEEEc----CCCCCcEEEEEEcCC---CcceEEEEeCC-----C--CeE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM-MLMIRL----PFIPGAVEWVYKQGD---VKAGLAISDRN-----S--SFV 65 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~-~~~~~l----~~~~~~v~~v~~s~~---~~~~~l~s~~~-----d--~~I 65 (513)
|+|.|||+++++ ...|.|++++ ..+.. .....+ .........++++|+ ...++++.... . ..|
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v 84 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRV 84 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEE
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceee
Confidence 579999998875 5699999999 44444 222222 123456788888884 22223333211 1 223
Q ss_pred EEEecCCC-----CCcce-EEeec---CCCCeEEEEEcCCCCEEEEEcCCCc
Q 010302 66 HIYDARAD-----SNEPL-ISKKV---HMGPVKVMRYNPVFDTVISADDKGI 108 (513)
Q Consensus 66 ~iwd~~~~-----~~~~i-~~~~~---h~~~V~~l~~sp~~~~l~s~s~dg~ 108 (513)
.-|..... ..+.+ ..+.. ....-..|+|.|+|.+.++.+..+.
T Consensus 85 ~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 85 VRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred EEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 33333211 01111 11122 2234467999999987777665443
No 489
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=72.34 E-value=13 Score=23.44 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=23.6
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCCeEEEEec
Q 010302 151 PDGKQFSITS-PDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 151 pdg~~l~s~s-~D~~I~iwd~~tg~~~~~~~ 180 (513)
|++++|.++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 6778776655 58899999999998877664
No 490
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=72.18 E-value=96 Score=32.68 Aligned_cols=113 Identities=7% Similarity=0.021 Sum_probs=62.8
Q ss_pred CeEecC----CCEEEEEeCCCcEEEEEcc-----CCceeEEEEcC---CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEE
Q 010302 1 MQVSVD----GLLCCSISNDKSVKIYDVV-----NYDMMLMIRLP---FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIY 68 (513)
Q Consensus 1 v~~s~d----g~~las~s~D~~v~iwd~~-----~~~~~~~~~l~---~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw 68 (513)
++|+|- --.|.+....+.|.||.+. +.+.......+ ..+--...+-|+|... +++.-.....-.++
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~--iL~VLT~~dvSV~~ 139 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA--ILTVLTARDVSVLP 139 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc--eEEEEecCceeEee
Confidence 456664 2234446678899999875 22322221111 1112233456777766 33332222233456
Q ss_pred ecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC-CcEEEecCCC
Q 010302 69 DARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-GIIEYWSPHT 116 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-g~i~iwd~~~ 116 (513)
+++.++.+....+ ...+.|.|.+|.+||+.|+.+-.. =.-+|||-..
T Consensus 140 sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 140 SVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 6654444444444 456789999999999988665433 2356897644
No 491
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=71.80 E-value=1.2e+02 Score=30.89 Aligned_cols=147 Identities=12% Similarity=0.100 Sum_probs=83.8
Q ss_pred CCCEEEEEeCCCcEEEEEccCCc-----eeEEEEcCCCCCcEEEEEEc---CCCcceEEEEeCCCCeEEEEecCCCCCc-
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYD-----MMLMIRLPFIPGAVEWVYKQ---GDVKAGLAISDRNSSFVHIYDARADSNE- 76 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~-----~~~~~~l~~~~~~v~~v~~s---~~~~~~~l~s~~~d~~I~iwd~~~~~~~- 76 (513)
+...|+.||..|.++||+-...+ ++...++ ..+|..+..- +......++. -.-+.+.||.+....+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 34689999999999999986433 2222232 2455555433 2222222322 34566778877422222
Q ss_pred ------ceEEeecCCC--CeEEEEEcC----C-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 77 ------PLISKKVHMG--PVKVMRYNP----V-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 77 ------~i~~~~~h~~--~V~~l~~sp----~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
.+..+..|.- ....+++-| . ..+++.=+.||.+.+++-+... |.. .+. .---
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-------f~~-------~lp-~~ll 176 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-------FSR-------FLP-DFLL 176 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-------EEE-------EcC-CCCC
Confidence 1122223322 223333333 2 3678889999999999764411 111 111 1112
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 144 VSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 144 v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
+-.++++|.-..|++++.+..+.-|...
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHH
Confidence 3457899999999999999888888754
No 492
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.72 E-value=19 Score=22.38 Aligned_cols=30 Identities=10% Similarity=0.105 Sum_probs=19.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEc-CC--CcEEEe
Q 010302 83 VHMGPVKVMRYNPVFDTVISAD-DK--GIIEYW 112 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s-~d--g~i~iw 112 (513)
.....-....|+|||+.|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999999886544 44 555555
No 493
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.51 E-value=1.1e+02 Score=30.11 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=56.6
Q ss_pred CeEecCCCEEEEEeCCCc------EEEEEccC--C-----ceeEEEEcCCCCC--------cEEEEEEcCCCcceEEEEe
Q 010302 1 MQVSVDGLLCCSISNDKS------VKIYDVVN--Y-----DMMLMIRLPFIPG--------AVEWVYKQGDVKAGLAISD 59 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~------v~iwd~~~--~-----~~~~~~~l~~~~~--------~v~~v~~s~~~~~~~l~s~ 59 (513)
|.+.+++..+++.|+++. +..+++.. + .......+....+ -...+++.+++. +.++.
T Consensus 25 l~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~--~~is~ 102 (326)
T PF13449_consen 25 LDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS--FWISS 102 (326)
T ss_pred EEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--EEEEe
Confidence 356655556666788877 65555543 1 0111111111111 344666655555 77777
Q ss_pred CCC------CeEEEEecCCCCCcceEEee---------------cCCCCeEEEEEcCCCCEEEEEcC
Q 010302 60 RNS------SFVHIYDARADSNEPLISKK---------------VHMGPVKVMRYNPVFDTVISADD 105 (513)
Q Consensus 60 ~~d------~~I~iwd~~~~~~~~i~~~~---------------~h~~~V~~l~~sp~~~~l~s~s~ 105 (513)
-.+ ..|..++.. ++.+..+. ......-+|+++|+|+.|+++.+
T Consensus 103 E~~~~~~~~p~I~~~~~~---G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 103 EGGRTGGIPPRIRRFDLD---GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CCccCCCCCCEEEEECCC---CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 667 788888863 44444331 23345789999999997766554
No 494
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=71.34 E-value=99 Score=34.59 Aligned_cols=135 Identities=8% Similarity=0.079 Sum_probs=80.5
Q ss_pred cEEEEEccCCceeEEEEcCCCCC--cEEEEEEcCCCcceEEEEeC---------CCCeEEEEecCCCCCcceEEeecC--
Q 010302 18 SVKIYDVVNYDMMLMIRLPFIPG--AVEWVYKQGDVKAGLAISDR---------NSSFVHIYDARADSNEPLISKKVH-- 84 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~~~--~v~~v~~s~~~~~~~l~s~~---------~d~~I~iwd~~~~~~~~i~~~~~h-- 84 (513)
.++++|-+|++..+...+..... .+..+.|..+....+++..+ ..|.|.++... ..+.+.....+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~--e~~~L~~v~e~~v 828 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE--ELNSLELVAETVV 828 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe--cCCceeeeeeeee
Confidence 47788888887776655543322 35555677775443333221 24567777765 22333322211
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCc
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR 164 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~ 164 (513)
++.+.++.- -+|+++|.- ...|++++..+ ++.++.-+.+..++..+...-.|..++.|..-+.
T Consensus 829 ~Gav~aL~~-fngkllA~I--n~~vrLye~t~--------------~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 829 KGAVYALVE-FNGKLLAGI--NQSVRLYEWTT--------------ERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred ccceeehhh-hCCeEEEec--CcEEEEEEccc--------------cceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 223333321 166666544 45799987755 3345556668888889999999999999988777
Q ss_pred EEEEEcC
Q 010302 165 IRVFWFR 171 (513)
Q Consensus 165 I~iwd~~ 171 (513)
+.+-..+
T Consensus 892 itll~y~ 898 (1096)
T KOG1897|consen 892 ITLLQYK 898 (1096)
T ss_pred EEEEEEe
Confidence 7665443
No 495
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=70.86 E-value=42 Score=32.54 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=54.1
Q ss_pred CCCCceEEcCCCCEEEEccc-cceEEEEcccCcEEEEeCCC-CccchhheeccccCCcCCcceeeeeccccccccCCCCC
Q 010302 220 APPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKV-ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPF 297 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~-~gi~v~d~~t~~~v~~~g~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (513)
..+.+|..+++|++|++.-. ..|.++|..+|+++=.+|+. .+.... .-..|. .+
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~-~~~~f~-----------------------~Q 199 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL-PATNFS-----------------------WQ 199 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc-cCCcEe-----------------------ec
Confidence 34567888899999998854 45999999999999998765 322221 111111 15
Q ss_pred CCCeEEEeeecCceEEEEecC
Q 010302 298 SDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 298 ~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.|+.++-.+.++++|-+|.+.
T Consensus 200 Hdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 200 HDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred cCCEEeccCCCCCEEEEEcCC
Confidence 888888888899999999874
No 496
>PLN02153 epithiospecifier protein
Probab=68.65 E-value=1.2e+02 Score=29.74 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=15.0
Q ss_pred CCCEEEEEeCC-------CcEEEEEccCCce
Q 010302 6 DGLLCCSISND-------KSVKIYDVVNYDM 29 (513)
Q Consensus 6 dg~~las~s~D-------~~v~iwd~~~~~~ 29 (513)
++++++.|+.+ ..+.+||..+.+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 62 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTW 62 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEE
Confidence 45666666652 3577888876544
No 497
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=68.29 E-value=15 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEE
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVF 168 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iw 168 (513)
.+..++++++|+.+++=+..+.|++|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 46788888888888877777777664
No 498
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=67.02 E-value=1.3e+02 Score=29.23 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=26.7
Q ss_pred CCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeC
Q 010302 221 PPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 221 ~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g 257 (513)
.+.++++.. .||+.-...+|.|+++.++++++++.
T Consensus 245 ~p~~~~~~~--pyll~~~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 245 MPESFAYHS--PYLLAFHDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cccEEEEEC--CEEEEEcCCcEEEEECCCCceEEEEe
Confidence 345566663 66666677789999999999998884
No 499
>PRK10115 protease 2; Provisional
Probab=64.36 E-value=2.3e+02 Score=31.21 Aligned_cols=107 Identities=5% Similarity=-0.060 Sum_probs=60.0
Q ss_pred eEecCCCEEEEEeC-----CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC----CCeEEEEecCC
Q 010302 2 QVSVDGLLCCSISN-----DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN----SSFVHIYDARA 72 (513)
Q Consensus 2 ~~s~dg~~las~s~-----D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~----d~~I~iwd~~~ 72 (513)
.+||||++||-+.+ ..+|++.|+.+++.+... +. ..-..+.|+++++.++..+-.. ...|..+++.
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg- 207 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG- 207 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-cc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC-
Confidence 68999999987743 235888888877632221 11 1224588998888655544422 2457777775
Q ss_pred CCC--cceEEeecCCCCeE-EEEEcCCCCEEEEEc---CCCcEEEecC
Q 010302 73 DSN--EPLISKKVHMGPVK-VMRYNPVFDTVISAD---DKGIIEYWSP 114 (513)
Q Consensus 73 ~~~--~~i~~~~~h~~~V~-~l~~sp~~~~l~s~s---~dg~i~iwd~ 114 (513)
+. +-...+........ .+..+.++++++..+ .++.+.+++.
T Consensus 208 -t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 208 -TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred -CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 44 33333332222333 333344777665433 2345777764
No 500
>PLN02153 epithiospecifier protein
Probab=62.69 E-value=1.6e+02 Score=28.92 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=15.5
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCcee
Q 010302 6 DGLLCCSISND-----KSVKIYDVVNYDMM 30 (513)
Q Consensus 6 dg~~las~s~D-----~~v~iwd~~~~~~~ 30 (513)
++++++.|+.+ ..+.+||..+.+..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 45666666643 35778888765543
Done!