Query 010302
Match_columns 513
No_of_seqs 567 out of 4408
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 03:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2n_A Peptidylprolyl isomeras 100.0 3.2E-50 1.1E-54 350.7 20.1 174 336-511 2-176 (176)
2 2fu0_A Cyclophilin, putative; 100.0 1.6E-49 5.3E-54 341.8 19.1 157 356-512 4-160 (160)
3 2x7k_A Peptidyl-prolyl CIS-tra 100.0 5.3E-49 1.8E-53 340.6 20.0 156 356-511 10-165 (166)
4 2ok3_A Peptidyl-prolyl CIS-tra 100.0 7E-49 2.4E-53 339.0 19.0 155 358-512 1-156 (161)
5 1zkc_A Peptidyl-prolyl CIS-tra 100.0 2.9E-48 1E-52 342.7 20.6 161 352-512 14-175 (197)
6 2b71_A Cyclophilin-like protei 100.0 3E-48 1E-52 342.8 19.7 157 356-512 37-193 (196)
7 2poe_A Cyclophilin-like protei 100.0 3.7E-48 1.3E-52 340.5 19.9 159 354-512 13-175 (185)
8 2k7n_A Peptidyl-prolyl CIS-tra 100.0 3.4E-48 1.2E-52 343.3 18.8 158 356-513 10-167 (203)
9 3bo7_A Peptidyl-prolyl CIS-tra 100.0 2.4E-47 8.1E-52 341.0 18.7 158 355-512 4-173 (201)
10 1w74_A Peptidyl-prolyl CIS-tra 100.0 8.6E-47 2.9E-51 332.6 19.3 155 354-511 20-191 (191)
11 2hq6_A Serologically defined c 100.0 4.6E-46 1.6E-50 326.7 18.7 158 354-512 21-180 (185)
12 1z81_A Cyclophilin; structural 100.0 5.4E-46 1.8E-50 335.0 18.5 183 328-511 26-229 (229)
13 1mzw_A Cyclophilin H, U-snRNP- 100.0 7.4E-46 2.5E-50 324.4 18.6 154 357-511 10-177 (177)
14 2cmt_A Peptidyl-prolyl CIS-tra 100.0 1.2E-45 4.1E-50 321.1 19.7 154 357-512 10-172 (172)
15 2wfi_A Peptidyl-prolyl CIS-tra 100.0 7.4E-46 2.5E-50 325.1 17.5 150 361-511 18-179 (179)
16 2he9_A NK-tumor recognition pr 100.0 9.5E-46 3.3E-50 326.7 17.5 151 361-512 28-190 (192)
17 2r99_A Peptidyl-prolyl CIS-tra 100.0 3E-45 1E-49 319.4 20.2 154 357-512 11-173 (173)
18 2haq_A Cyclophilin; rotamase, 100.0 5.9E-46 2E-50 322.1 15.6 150 360-511 19-172 (172)
19 1a58_A Cyclophilin; isomerase, 100.0 2.4E-45 8.2E-50 321.6 18.6 148 364-512 18-177 (177)
20 3ich_A Peptidyl-prolyl CIS-tra 100.0 2.1E-45 7E-50 324.0 17.6 147 364-511 27-177 (188)
21 1qng_A Peptidyl-prolyl CIS-tra 100.0 3.5E-45 1.2E-49 318.4 18.8 153 357-511 3-170 (170)
22 2igv_A Peptidyl-prolyl CIS-tra 100.0 4.5E-45 1.6E-49 318.6 19.1 153 358-512 4-172 (173)
23 2z6w_A Peptidyl-prolyl CIS-tra 100.0 8.5E-45 2.9E-49 314.4 19.7 147 364-512 15-165 (165)
24 3s6m_A Peptidyl-prolyl CIS-tra 100.0 3.2E-45 1.1E-49 319.3 17.0 153 356-511 2-167 (167)
25 3pmp_A Cyclophilin A; peptidyl 100.0 6.4E-45 2.2E-49 315.6 18.4 147 364-512 14-164 (164)
26 1lop_A Cyclophilin A; rotamase 100.0 2E-45 6.9E-50 318.8 14.4 151 359-512 1-164 (164)
27 3bkp_A Cyclophilin; malaria, i 100.0 5.4E-45 1.8E-49 330.8 17.2 156 356-512 20-193 (232)
28 3rdd_A Peptidyl-prolyl CIS-tra 100.0 2.1E-44 7.2E-49 316.8 19.1 156 355-512 20-184 (184)
29 3k2c_A Peptidyl-prolyl CIS-tra 100.0 3.5E-44 1.2E-48 317.5 20.5 158 353-512 23-191 (193)
30 1v9t_A Cyclophilin B; beta bar 100.0 1.2E-44 4.2E-49 314.5 17.1 154 356-512 3-166 (166)
31 2poy_A Peptidyl-prolyl CIS-tra 100.0 2.6E-44 8.9E-49 315.9 18.4 154 355-510 17-186 (186)
32 4fru_A Cyclophilin B, peptidyl 100.0 2E-44 6.7E-49 318.6 16.7 157 355-512 10-175 (185)
33 2c3b_A Ppiase, cyclophilin; is 100.0 6.4E-45 2.2E-49 317.0 11.7 148 363-511 18-172 (172)
34 2ose_A Probable peptidyl-proly 100.0 3.5E-43 1.2E-47 319.8 17.0 153 357-512 14-207 (234)
35 1ihg_A Cyclophilin 40; ppiase 100.0 7.9E-40 2.7E-44 327.3 19.4 154 357-512 15-185 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 4E-37 1.4E-41 294.8 8.9 147 355-513 168-356 (369)
37 1vyh_C Platelet-activating fac 100.0 3.5E-33 1.2E-37 284.0 25.0 268 1-317 114-409 (410)
38 3ow8_A WD repeat-containing pr 100.0 2.1E-32 7.3E-37 268.8 28.7 269 1-317 38-319 (321)
39 2ynn_A Coatomer subunit beta'; 100.0 2.9E-32 1E-36 265.6 29.0 238 1-320 19-260 (304)
40 1got_B GT-beta; complex (GTP-b 100.0 6.6E-32 2.3E-36 267.5 28.1 268 1-316 61-340 (340)
41 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.1E-32 2.1E-36 268.3 27.7 289 1-321 22-337 (345)
42 4ery_A WD repeat-containing pr 100.0 3.6E-31 1.2E-35 258.4 32.6 241 1-321 29-270 (312)
43 4gqb_B Methylosome protein 50; 100.0 1.4E-31 4.8E-36 265.5 28.4 235 1-318 88-330 (344)
44 2pbi_B Guanine nucleotide-bind 100.0 8E-31 2.7E-35 261.2 32.7 236 1-316 70-354 (354)
45 3frx_A Guanine nucleotide-bind 100.0 3.9E-30 1.3E-34 252.4 32.1 240 1-318 71-316 (319)
46 3iz6_a 40S ribosomal protein R 100.0 1.9E-30 6.4E-35 261.1 30.2 244 1-318 72-374 (380)
47 2pm7_B Protein transport prote 100.0 1E-29 3.4E-34 246.8 28.8 245 1-319 15-285 (297)
48 2ynn_A Coatomer subunit beta'; 100.0 2.1E-29 7.2E-34 245.4 29.9 204 1-260 61-270 (304)
49 4g56_B MGC81050 protein; prote 100.0 4.6E-30 1.6E-34 256.0 24.8 239 1-320 100-344 (357)
50 1erj_A Transcriptional repress 100.0 2.9E-29 9.8E-34 253.6 30.5 258 1-318 129-388 (393)
51 4gqb_B Methylosome protein 50; 100.0 8.4E-30 2.9E-34 252.7 24.3 235 1-319 36-289 (344)
52 2xzm_R RACK1; ribosome, transl 100.0 5.2E-29 1.8E-33 246.9 30.0 280 4-318 35-339 (343)
53 2hes_X YDR267CP; beta-propelle 100.0 5.5E-29 1.9E-33 245.4 29.6 277 1-318 20-327 (330)
54 4ery_A WD repeat-containing pr 100.0 2.7E-28 9.3E-33 238.0 33.1 236 1-317 71-310 (312)
55 3frx_A Guanine nucleotide-bind 100.0 1.5E-28 5E-33 241.2 29.9 234 1-319 23-267 (319)
56 1erj_A Transcriptional repress 100.0 3E-28 1E-32 246.1 29.6 255 1-320 70-342 (393)
57 3bg1_A Protein SEC13 homolog; 100.0 1.6E-29 5.6E-34 247.6 19.5 244 1-319 19-293 (316)
58 1nr0_A Actin interacting prote 100.0 5E-28 1.7E-32 258.7 31.9 269 1-320 65-356 (611)
59 3dm0_A Maltose-binding peripla 100.0 3.1E-28 1.1E-32 264.3 29.1 289 1-317 388-691 (694)
60 1nr0_A Actin interacting prote 100.0 8.5E-28 2.9E-32 257.0 31.9 241 1-319 24-270 (611)
61 4aow_A Guanine nucleotide-bind 100.0 2.4E-27 8.4E-32 233.2 31.8 258 1-318 44-336 (340)
62 3ow8_A WD repeat-containing pr 100.0 4.2E-28 1.4E-32 238.2 26.1 191 1-247 128-319 (321)
63 3vl1_A 26S proteasome regulato 100.0 2E-28 7E-33 248.7 24.1 270 1-321 62-367 (420)
64 4g56_B MGC81050 protein; prote 100.0 4.4E-29 1.5E-33 249.0 18.5 239 1-319 48-301 (357)
65 1gxr_A ESG1, transducin-like e 100.0 1.3E-27 4.3E-32 234.6 28.4 268 1-316 57-334 (337)
66 3zwl_B Eukaryotic translation 100.0 2.1E-27 7.2E-32 235.9 28.9 280 1-319 38-346 (369)
67 1r5m_A SIR4-interacting protei 100.0 9.8E-28 3.3E-32 243.1 25.8 285 1-318 51-424 (425)
68 2pm9_A Protein WEB1, protein t 100.0 2.6E-28 8.9E-33 247.3 21.5 287 1-321 18-339 (416)
69 3ei3_B DNA damage-binding prot 100.0 1.6E-27 5.5E-32 239.4 27.1 268 1-319 79-382 (383)
70 2ymu_A WD-40 repeat protein; u 100.0 1.7E-27 5.9E-32 252.2 28.6 227 1-316 350-577 (577)
71 4e54_B DNA damage-binding prot 100.0 7.2E-28 2.5E-32 246.7 24.4 257 1-320 170-431 (435)
72 3dwl_C Actin-related protein 2 100.0 9.6E-29 3.3E-33 247.5 17.3 256 1-318 17-280 (377)
73 3jrp_A Fusion protein of prote 100.0 9.9E-27 3.4E-31 232.1 29.4 243 1-319 17-287 (379)
74 1vyh_C Platelet-activating fac 100.0 9.7E-28 3.3E-32 243.8 22.3 225 1-247 156-409 (410)
75 1k8k_C P40, ARP2/3 complex 41 100.0 4.9E-27 1.7E-31 234.1 26.5 239 1-319 14-274 (372)
76 3dw8_B Serine/threonine-protei 100.0 2E-27 6.8E-32 243.3 24.1 273 1-321 34-375 (447)
77 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-27 6.6E-32 235.8 22.9 240 1-255 67-341 (345)
78 3v7d_B Cell division control p 100.0 1.1E-26 3.7E-31 239.5 29.3 276 2-316 127-460 (464)
79 1k8k_C P40, ARP2/3 complex 41 100.0 7.2E-27 2.4E-31 232.9 26.8 279 1-319 58-361 (372)
80 4aez_A CDC20, WD repeat-contai 100.0 2E-26 6.8E-31 233.3 29.3 271 3-321 99-382 (401)
81 4ggc_A P55CDC, cell division c 100.0 2.1E-26 7.1E-31 224.3 28.4 270 1-319 31-315 (318)
82 4e54_B DNA damage-binding prot 100.0 1.3E-27 4.5E-32 244.7 20.4 207 1-260 125-338 (435)
83 3gre_A Serine/threonine-protei 100.0 1.6E-27 5.5E-32 243.7 20.6 261 1-321 69-361 (437)
84 2ymu_A WD-40 repeat protein; u 100.0 1.4E-26 4.7E-31 245.3 28.0 262 1-317 268-537 (577)
85 3k26_A Polycomb protein EED; W 100.0 1.3E-26 4.5E-31 230.0 25.5 261 1-317 75-364 (366)
86 3f3f_A Nucleoporin SEH1; struc 100.0 4.9E-26 1.7E-30 223.5 28.8 281 1-321 17-339 (351)
87 1got_B GT-beta; complex (GTP-b 100.0 8.4E-27 2.9E-31 230.7 23.3 225 1-246 103-340 (340)
88 3gre_A Serine/threonine-protei 100.0 6.4E-27 2.2E-31 239.3 22.7 286 1-316 117-437 (437)
89 2j04_B YDR362CP, TAU91; beta p 99.9 2.1E-27 7.1E-32 247.8 19.0 239 4-318 170-427 (524)
90 4gga_A P55CDC, cell division c 99.9 4.8E-26 1.6E-30 232.0 28.7 270 1-319 111-395 (420)
91 2pbi_B Guanine nucleotide-bind 99.9 2.5E-26 8.6E-31 228.7 25.7 192 1-246 160-354 (354)
92 2hes_X YDR267CP; beta-propelle 99.9 1.1E-26 3.9E-31 228.8 22.2 233 1-249 64-328 (330)
93 1sq9_A Antiviral protein SKI8; 99.9 1.6E-26 5.4E-31 232.8 23.5 296 1-318 22-394 (397)
94 3mkq_A Coatomer beta'-subunit; 99.9 4E-26 1.4E-30 251.8 27.7 237 1-319 19-259 (814)
95 3sfz_A APAF-1, apoptotic pepti 99.9 9.3E-26 3.2E-30 260.3 31.6 268 1-318 621-912 (1249)
96 2xzm_R RACK1; ribosome, transl 99.9 2.3E-26 7.8E-31 227.8 21.7 226 1-251 82-342 (343)
97 3i2n_A WD repeat-containing pr 99.9 3.6E-26 1.2E-30 226.2 23.1 291 1-319 24-353 (357)
98 3dwl_C Actin-related protein 2 99.9 3.3E-27 1.1E-31 236.3 15.5 208 1-249 61-281 (377)
99 2j04_B YDR362CP, TAU91; beta p 99.9 7.7E-27 2.6E-31 243.5 17.4 262 1-318 213-516 (524)
100 3vl1_A 26S proteasome regulato 99.9 7.6E-26 2.6E-30 229.7 23.7 238 2-250 104-366 (420)
101 2aq5_A Coronin-1A; WD40 repeat 99.9 2.1E-25 7.2E-30 225.7 26.7 237 2-319 41-299 (402)
102 4h5i_A Guanine nucleotide-exch 99.9 5.5E-26 1.9E-30 227.2 21.7 196 1-250 139-344 (365)
103 3dw8_B Serine/threonine-protei 99.9 2.8E-25 9.6E-30 227.3 27.3 279 1-318 99-445 (447)
104 4gq1_A NUP37; propeller, trans 99.9 9.6E-26 3.3E-30 227.8 23.2 262 3-315 97-385 (393)
105 3sfz_A APAF-1, apoptotic pepti 99.9 1.1E-25 3.9E-30 259.6 26.9 286 1-319 663-1034(1249)
106 2pm9_A Protein WEB1, protein t 99.9 6.3E-26 2.1E-30 229.7 20.6 199 1-252 119-340 (416)
107 3k26_A Polycomb protein EED; W 99.9 1.4E-25 4.7E-30 222.7 22.6 278 1-320 24-319 (366)
108 3jro_A Fusion protein of prote 99.9 2.1E-25 7.1E-30 244.1 25.5 247 1-320 15-286 (753)
109 1gxr_A ESG1, transducin-like e 99.9 1.6E-25 5.6E-30 219.5 21.9 273 1-320 15-297 (337)
110 2xyi_A Probable histone-bindin 99.9 7.3E-25 2.5E-29 224.0 27.4 242 1-319 134-410 (430)
111 3iz6_a 40S ribosomal protein R 99.9 3.5E-25 1.2E-29 222.5 23.8 202 1-251 163-377 (380)
112 2pm7_B Protein transport prote 99.9 5E-25 1.7E-29 213.6 23.8 204 1-248 59-284 (297)
113 2aq5_A Coronin-1A; WD40 repeat 99.9 1.6E-25 5.4E-30 226.6 20.7 197 1-251 87-301 (402)
114 4a11_B DNA excision repair pro 99.9 1E-24 3.5E-29 219.8 26.1 210 1-250 49-277 (408)
115 4h5i_A Guanine nucleotide-exch 99.9 3.8E-24 1.3E-28 213.8 29.2 242 2-319 78-343 (365)
116 3lrv_A PRE-mRNA-splicing facto 99.9 1.9E-25 6.4E-30 221.2 18.6 234 3-318 44-291 (343)
117 1pgu_A Actin interacting prote 99.9 2.8E-24 9.6E-29 228.8 28.9 237 1-320 24-284 (615)
118 2oaj_A Protein SNI1; WD40 repe 99.9 5.1E-25 1.7E-29 244.8 23.9 277 1-321 441-785 (902)
119 2j04_A TAU60, YPL007P, hypothe 99.9 4.9E-25 1.7E-29 225.6 21.5 232 1-316 21-294 (588)
120 3dm0_A Maltose-binding peripla 99.9 7.2E-25 2.5E-29 237.8 23.8 224 1-248 436-692 (694)
121 3odt_A Protein DOA1; ubiquitin 99.9 2.4E-24 8.2E-29 209.0 25.0 262 1-319 24-296 (313)
122 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.6E-24 1.2E-28 220.1 27.2 229 1-259 108-354 (450)
123 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.4E-24 2.5E-28 217.8 29.1 207 1-258 10-280 (450)
124 2ovr_B FBW7, F-BOX/WD repeat p 99.9 5.8E-24 2E-28 218.1 26.8 264 2-321 124-393 (445)
125 1p22_A F-BOX/WD-repeat protein 99.9 1.3E-23 4.3E-28 215.0 29.0 227 2-319 138-365 (435)
126 4aez_A CDC20, WD repeat-contai 99.9 4.4E-24 1.5E-28 216.0 24.8 233 1-256 140-387 (401)
127 3mmy_A MRNA export factor; mRN 99.9 3.1E-24 1.1E-28 212.9 22.5 231 1-260 45-315 (368)
128 3bg1_A Protein SEC13 homolog; 99.9 8.6E-25 2.9E-29 214.0 17.6 199 1-248 63-292 (316)
129 1pgu_A Actin interacting prote 99.9 9E-24 3.1E-28 224.9 26.7 206 1-259 70-293 (615)
130 4a11_B DNA excision repair pro 99.9 1.4E-23 4.8E-28 211.3 26.7 282 1-318 105-404 (408)
131 2oaj_A Protein SNI1; WD40 repe 99.9 8.3E-24 2.8E-28 235.1 26.7 223 1-255 23-248 (902)
132 3ei3_B DNA damage-binding prot 99.9 3.9E-24 1.3E-28 214.6 21.9 230 1-249 124-382 (383)
133 3jrp_A Fusion protein of prote 99.9 1.9E-23 6.6E-28 208.2 25.9 210 1-256 61-294 (379)
134 1p22_A F-BOX/WD-repeat protein 99.9 3.3E-23 1.1E-27 211.9 27.9 223 3-319 179-414 (435)
135 3mkq_A Coatomer beta'-subunit; 99.9 2.2E-23 7.7E-28 229.7 28.5 204 1-260 61-270 (814)
136 1yfq_A Cell cycle arrest prote 99.9 7.3E-24 2.5E-28 208.6 22.1 253 1-319 17-282 (342)
137 1yfq_A Cell cycle arrest prote 99.9 9.4E-24 3.2E-28 207.8 22.6 209 1-259 62-292 (342)
138 1sq9_A Antiviral protein SKI8; 99.9 9.8E-24 3.4E-28 212.3 22.2 211 1-251 127-397 (397)
139 4aow_A Guanine nucleotide-bind 99.9 4.2E-23 1.4E-27 202.9 25.7 204 2-251 135-339 (340)
140 2ovr_B FBW7, F-BOX/WD repeat p 99.9 5E-23 1.7E-27 211.1 27.1 259 6-318 168-441 (445)
141 3vu4_A KMHSV2; beta-propeller 99.9 1.3E-22 4.4E-27 201.9 28.8 205 1-251 25-273 (355)
142 3zwl_B Eukaryotic translation 99.9 4.1E-23 1.4E-27 204.9 23.3 236 1-256 80-353 (369)
143 2w18_A PALB2, fancn, partner a 99.9 2.1E-23 7.2E-28 201.0 20.4 177 16-247 156-355 (356)
144 3f3f_A Nucleoporin SEH1; struc 99.9 4.5E-23 1.5E-27 202.3 23.2 239 1-256 63-344 (351)
145 3lrv_A PRE-mRNA-splicing facto 99.9 9.8E-23 3.3E-27 201.6 24.7 195 1-251 82-294 (343)
146 1r5m_A SIR4-interacting protei 99.9 8.8E-23 3E-27 206.5 24.7 225 1-248 114-424 (425)
147 4gga_A P55CDC, cell division c 99.9 5.7E-23 2E-27 209.2 22.9 237 1-256 153-402 (420)
148 3i2n_A WD repeat-containing pr 99.9 1.2E-23 4.3E-28 207.9 15.1 230 1-252 71-356 (357)
149 4gq1_A NUP37; propeller, trans 99.9 3.6E-22 1.2E-26 201.5 25.2 271 55-375 103-389 (393)
150 2j04_A TAU60, YPL007P, hypothe 99.9 6.8E-22 2.3E-26 202.5 27.1 187 1-248 91-296 (588)
151 3bws_A Protein LP49; two-domai 99.9 4.3E-22 1.5E-26 202.9 25.6 269 1-318 128-431 (433)
152 1l0q_A Surface layer protein; 99.9 2E-21 6.9E-26 195.2 29.8 232 1-319 37-275 (391)
153 4ggc_A P55CDC, cell division c 99.9 1.4E-21 4.9E-26 190.0 27.4 206 1-250 73-316 (318)
154 2w18_A PALB2, fancn, partner a 99.9 5.6E-22 1.9E-26 191.1 23.4 227 10-316 57-354 (356)
155 2xyi_A Probable histone-bindin 99.9 5.7E-22 2E-26 202.5 23.7 215 1-251 187-412 (430)
156 3odt_A Protein DOA1; ubiquitin 99.9 6.8E-22 2.3E-26 191.7 21.4 228 1-256 65-303 (313)
157 3mmy_A MRNA export factor; mRN 99.9 1.6E-21 5.6E-26 193.1 21.2 200 1-254 92-354 (368)
158 3jro_A Fusion protein of prote 99.9 8.3E-22 2.8E-26 215.5 20.4 208 1-251 59-287 (753)
159 3vu4_A KMHSV2; beta-propeller 99.9 6.6E-21 2.3E-25 189.5 24.6 215 2-250 65-337 (355)
160 1l0q_A Surface layer protein; 99.9 5.1E-20 1.7E-24 184.9 29.1 226 7-320 2-234 (391)
161 3v7d_B Cell division control p 99.9 3.8E-20 1.3E-24 190.5 24.6 233 34-320 116-382 (464)
162 2hqs_A Protein TOLB; TOLB, PAL 99.8 3E-18 1E-22 174.1 25.8 203 1-264 184-401 (415)
163 2hqs_A Protein TOLB; TOLB, PAL 99.8 8.6E-18 2.9E-22 170.6 28.0 190 6-255 142-350 (415)
164 3bws_A Protein LP49; two-domai 99.8 2.3E-18 8E-23 175.2 23.2 233 3-319 71-334 (433)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-18 4.5E-23 177.6 17.6 200 1-250 42-279 (434)
166 3vgz_A Uncharacterized protein 99.8 7.8E-17 2.7E-21 158.9 27.2 238 1-319 46-303 (353)
167 1nir_A Nitrite reductase; hemo 99.8 1.1E-16 3.7E-21 167.9 28.9 239 1-321 184-460 (543)
168 3u4y_A Uncharacterized protein 99.8 2.5E-16 8.6E-21 154.0 29.5 246 1-320 45-305 (331)
169 1nir_A Nitrite reductase; hemo 99.8 8.3E-17 2.8E-21 168.8 27.6 235 2-319 144-402 (543)
170 2ecf_A Dipeptidyl peptidase IV 99.8 6.5E-18 2.2E-22 184.3 19.5 203 1-258 42-330 (741)
171 1pby_B Quinohemoprotein amine 99.8 1.4E-16 4.9E-21 155.7 26.8 261 8-320 2-311 (337)
172 1jmx_B Amine dehydrogenase; ox 99.8 1.1E-16 3.9E-21 157.3 23.6 235 1-257 5-292 (349)
173 1ri6_A Putative isomerase YBHE 99.8 2.1E-16 7E-21 154.9 25.3 203 1-248 43-261 (343)
174 3vgz_A Uncharacterized protein 99.8 6.1E-16 2.1E-20 152.4 28.6 203 1-257 94-311 (353)
175 2ojh_A Uncharacterized protein 99.7 6.7E-17 2.3E-21 154.4 19.7 199 1-255 47-264 (297)
176 1xfd_A DIP, dipeptidyl aminope 99.7 1E-17 3.6E-22 182.1 15.8 204 1-257 22-297 (723)
177 3u4y_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 149.2 27.5 236 2-319 4-252 (331)
178 1pby_B Quinohemoprotein amine 99.7 6.2E-16 2.1E-20 151.1 22.1 211 1-257 39-318 (337)
179 3hfq_A Uncharacterized protein 99.7 1.9E-15 6.3E-20 149.1 25.2 205 1-249 45-271 (347)
180 1xfd_A DIP, dipeptidyl aminope 99.7 3E-16 1E-20 170.5 19.9 161 1-180 66-297 (723)
181 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.4E-15 8.2E-20 149.8 24.6 216 1-254 45-297 (365)
182 2oit_A Nucleoporin 214KDA; NH2 99.7 1.2E-16 4.2E-21 162.9 14.4 160 1-173 98-279 (434)
183 2ojh_A Uncharacterized protein 99.7 2E-15 6.9E-20 144.1 21.9 186 13-257 18-213 (297)
184 2z3z_A Dipeptidyl aminopeptida 99.7 2E-15 6.8E-20 163.7 24.6 204 1-257 87-351 (706)
185 3o4h_A Acylamino-acid-releasin 99.7 4.2E-16 1.4E-20 165.3 17.9 233 1-317 27-274 (582)
186 2ecf_A Dipeptidyl peptidase IV 99.7 2E-15 6.8E-20 164.6 22.9 202 1-257 114-375 (741)
187 3scy_A Hypothetical bacterial 99.7 4E-14 1.4E-18 140.4 30.4 213 1-251 55-295 (361)
188 3hfq_A Uncharacterized protein 99.7 1.8E-14 6.2E-19 142.0 26.8 204 1-255 91-325 (347)
189 1ri6_A Putative isomerase YBHE 99.7 4.7E-15 1.6E-19 145.2 22.0 243 8-318 6-261 (343)
190 1jmx_B Amine dehydrogenase; ox 99.7 8.9E-15 3.1E-19 143.7 22.7 210 1-257 48-333 (349)
191 1k32_A Tricorn protease; prote 99.6 4E-15 1.4E-19 168.5 20.5 169 1-194 301-482 (1045)
192 2z3z_A Dipeptidyl aminopeptida 99.6 3.9E-15 1.3E-19 161.4 19.0 194 1-251 126-393 (706)
193 3fvz_A Peptidyl-glycine alpha- 99.6 1.1E-13 3.6E-18 135.8 27.4 241 1-319 29-322 (329)
194 1k32_A Tricorn protease; prote 99.6 9.6E-15 3.3E-19 165.4 22.0 192 2-255 251-467 (1045)
195 1q7f_A NHL, brain tumor CG1071 99.6 3.2E-13 1.1E-17 129.2 27.3 233 1-317 35-278 (286)
196 3o4h_A Acylamino-acid-releasin 99.6 2.8E-14 9.5E-19 151.2 19.5 197 2-254 71-279 (582)
197 1z68_A Fibroblast activation p 99.6 2.2E-15 7.4E-20 163.8 10.7 146 1-162 21-189 (719)
198 4a5s_A Dipeptidyl peptidase 4 99.6 6.3E-14 2.2E-18 152.9 21.4 155 1-170 22-200 (740)
199 1z68_A Fibroblast activation p 99.6 1.5E-14 5.2E-19 157.1 13.8 161 1-175 65-294 (719)
200 3scy_A Hypothetical bacterial 99.5 1.4E-12 4.7E-17 129.2 23.4 206 5-255 107-345 (361)
201 3pe7_A Oligogalacturonate lyas 99.5 4.4E-13 1.5E-17 133.9 19.2 153 2-175 42-228 (388)
202 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.5E-12 8.5E-17 127.8 23.6 207 1-250 88-342 (365)
203 3e5z_A Putative gluconolactona 99.5 3.9E-11 1.3E-15 115.3 28.5 198 1-260 33-256 (296)
204 3azo_A Aminopeptidase; POP fam 99.4 2.7E-12 9.4E-17 137.9 19.8 209 2-258 30-283 (662)
205 3pe7_A Oligogalacturonate lyas 99.4 5.8E-12 2E-16 125.7 20.6 203 1-256 86-336 (388)
206 4a5s_A Dipeptidyl peptidase 4 99.4 3E-12 1E-16 139.6 18.8 220 2-257 68-361 (740)
207 1rwi_B Serine/threonine-protei 99.4 2E-11 6.7E-16 115.4 20.9 235 1-321 29-266 (270)
208 1q7f_A NHL, brain tumor CG1071 99.4 3.2E-11 1.1E-15 115.2 22.3 192 2-250 83-281 (286)
209 2oiz_A Aromatic amine dehydrog 99.4 4.2E-11 1.4E-15 118.8 23.9 214 1-256 55-343 (361)
210 3azo_A Aminopeptidase; POP fam 99.4 1.4E-11 4.8E-16 132.4 21.8 207 4-258 87-333 (662)
211 3no2_A Uncharacterized protein 99.4 6.1E-11 2.1E-15 112.9 23.7 201 4-259 2-205 (276)
212 3c5m_A Oligogalacturonate lyas 99.4 1.9E-12 6.4E-17 129.4 13.2 199 1-256 41-280 (396)
213 2dg1_A DRP35, lactonase; beta 99.4 3.4E-10 1.2E-14 110.4 28.5 206 1-257 50-270 (333)
214 3c5m_A Oligogalacturonate lyas 99.4 1.7E-11 5.9E-16 122.4 19.0 196 1-255 86-335 (396)
215 3fvz_A Peptidyl-glycine alpha- 99.3 6E-11 2.1E-15 116.0 20.5 196 1-249 96-322 (329)
216 2xdw_A Prolyl endopeptidase; a 99.3 8.6E-11 2.9E-15 127.4 23.4 203 1-258 130-377 (710)
217 3dsm_A Uncharacterized protein 99.3 1.2E-10 4E-15 114.0 22.0 229 6-318 53-301 (328)
218 2dg1_A DRP35, lactonase; beta 99.3 2.7E-10 9.2E-15 111.2 23.7 238 1-317 11-261 (333)
219 2gop_A Trilobed protease; beta 99.3 1.8E-10 6E-15 113.1 19.4 189 1-257 64-299 (347)
220 2z2n_A Virginiamycin B lyase; 99.3 6E-09 2.1E-13 99.4 29.6 231 1-317 20-253 (299)
221 2gop_A Trilobed protease; beta 99.3 2E-10 6.8E-15 112.7 19.5 142 6-175 23-210 (347)
222 2bkl_A Prolyl endopeptidase; m 99.3 1.7E-10 5.7E-15 124.8 19.6 154 1-174 126-306 (695)
223 2oiz_A Aromatic amine dehydrog 99.2 1E-09 3.5E-14 108.8 23.4 150 5-176 13-187 (361)
224 3e5z_A Putative gluconolactona 99.2 6.7E-10 2.3E-14 106.6 20.1 195 1-252 74-289 (296)
225 1xip_A Nucleoporin NUP159; bet 99.2 2.2E-10 7.4E-15 113.5 16.2 145 1-179 43-200 (388)
226 3dsm_A Uncharacterized protein 99.2 1.2E-09 4E-14 106.8 21.1 200 1-257 89-309 (328)
227 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 3.2E-09 1.1E-13 102.3 22.7 235 1-319 23-299 (314)
228 1qks_A Cytochrome CD1 nitrite 99.2 2.5E-08 8.5E-13 104.4 29.3 160 1-179 202-380 (567)
229 2qc5_A Streptogramin B lactona 99.2 4.9E-08 1.7E-12 93.0 29.4 232 1-317 25-258 (300)
230 2bkl_A Prolyl endopeptidase; m 99.1 1.3E-09 4.5E-14 117.8 20.0 159 3-175 75-264 (695)
231 3hrp_A Uncharacterized protein 99.1 1E-08 3.5E-13 103.3 24.6 259 1-317 136-408 (409)
232 2z2n_A Virginiamycin B lyase; 99.1 9.4E-08 3.2E-12 91.0 30.1 194 1-252 62-257 (299)
233 1rwi_B Serine/threonine-protei 99.1 2.9E-09 1E-13 100.2 19.1 194 1-251 72-266 (270)
234 1qks_A Cytochrome CD1 nitrite 99.1 1.4E-08 4.8E-13 106.3 25.2 206 5-256 165-380 (567)
235 2xdw_A Prolyl endopeptidase; a 99.1 1E-08 3.4E-13 111.1 24.6 202 1-251 176-416 (710)
236 2qc5_A Streptogramin B lactona 99.1 1.6E-07 5.4E-12 89.4 29.6 195 1-253 67-263 (300)
237 3no2_A Uncharacterized protein 99.1 1E-08 3.5E-13 97.4 20.9 202 2-258 43-261 (276)
238 1yr2_A Prolyl oligopeptidase; 99.1 1.5E-09 5E-14 118.3 16.1 236 1-256 168-447 (741)
239 3g4e_A Regucalcin; six bladed 99.0 1.6E-07 5.4E-12 90.1 26.3 199 2-257 19-237 (297)
240 3dr2_A Exported gluconolactona 99.0 3E-07 1E-11 88.5 27.8 195 2-257 51-274 (305)
241 1yr2_A Prolyl oligopeptidase; 99.0 2.9E-08 9.8E-13 108.1 21.1 157 3-173 114-304 (741)
242 2mad_H Methylamine dehydrogena 99.0 4.6E-07 1.6E-11 89.9 27.9 249 1-320 71-351 (373)
243 3iuj_A Prolyl endopeptidase; h 98.9 1E-07 3.4E-12 102.9 20.9 156 1-174 134-316 (693)
244 1xip_A Nucleoporin NUP159; bet 98.9 2E-08 7E-13 99.4 13.6 131 1-160 93-232 (388)
245 2mad_H Methylamine dehydrogena 98.9 1.2E-06 4E-11 86.9 26.3 206 1-256 130-357 (373)
246 2qe8_A Uncharacterized protein 98.8 3.6E-07 1.2E-11 89.6 22.1 225 1-255 22-284 (343)
247 3c75_H MADH, methylamine dehyd 98.8 1.6E-07 5.3E-12 94.3 19.2 217 1-256 123-409 (426)
248 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1.1E-07 3.8E-12 91.4 17.7 196 1-249 76-299 (314)
249 3g4e_A Regucalcin; six bladed 98.8 2.2E-07 7.4E-12 89.1 19.0 165 1-180 59-237 (297)
250 3sjl_D Methylamine dehydrogena 98.8 4.9E-07 1.7E-11 89.1 21.2 247 1-319 83-363 (386)
251 2ghs_A AGR_C_1268P; regucalcin 98.8 2.3E-06 7.9E-11 83.1 25.5 196 2-256 55-266 (326)
252 3hrp_A Uncharacterized protein 98.8 8.8E-07 3E-11 89.1 23.1 166 1-176 176-358 (409)
253 2hz6_A Endoplasmic reticulum t 98.8 1.1E-09 3.8E-14 108.8 1.0 147 6-179 8-156 (369)
254 2qe8_A Uncharacterized protein 98.7 2.6E-07 8.8E-12 90.6 17.0 167 1-175 72-281 (343)
255 2iwa_A Glutamine cyclotransfer 98.7 3.4E-06 1.1E-10 78.8 22.6 204 1-250 26-238 (266)
256 3c75_H MADH, methylamine dehyd 98.6 3.6E-06 1.2E-10 84.3 21.6 108 5-118 82-211 (426)
257 1mda_H Methylamine dehydrogena 98.6 3.7E-07 1.3E-11 90.0 13.8 211 1-257 70-354 (368)
258 2ece_A 462AA long hypothetical 98.6 3.1E-06 1.1E-10 84.2 20.0 209 2-238 144-399 (462)
259 2ghs_A AGR_C_1268P; regucalcin 98.6 7.3E-06 2.5E-10 79.6 22.2 162 1-179 95-266 (326)
260 3sjl_D Methylamine dehydrogena 98.6 4E-06 1.4E-10 82.7 20.2 150 3-175 40-212 (386)
261 2ece_A 462AA long hypothetical 98.6 2E-05 6.9E-10 78.4 24.3 206 5-248 93-351 (462)
262 3dr2_A Exported gluconolactona 98.5 2.8E-06 9.4E-11 81.6 17.1 189 1-247 91-304 (305)
263 3nol_A Glutamine cyclotransfer 98.5 4.3E-06 1.5E-10 77.2 17.3 158 1-181 48-210 (262)
264 1yiq_A Quinohemoprotein alcoho 98.5 1.4E-05 4.8E-10 85.8 24.0 164 6-179 120-345 (689)
265 1kb0_A Quinohemoprotein alcoho 98.5 1.1E-05 3.6E-10 86.6 22.8 165 6-180 127-354 (677)
266 3iuj_A Prolyl endopeptidase; h 98.5 9.1E-06 3.1E-10 87.5 22.0 157 1-174 180-361 (693)
267 3nok_A Glutaminyl cyclase; bet 98.5 1E-05 3.5E-10 74.7 18.4 157 2-182 61-220 (268)
268 1mda_H Methylamine dehydrogena 98.4 3.1E-05 1.1E-09 76.2 21.4 102 9-116 34-158 (368)
269 1npe_A Nidogen, entactin; glyc 98.4 0.00027 9.3E-09 66.0 25.8 197 1-257 41-246 (267)
270 2fp8_A Strictosidine synthase; 98.3 8.6E-05 3E-09 71.6 22.2 235 1-318 24-312 (322)
271 3mbr_X Glutamine cyclotransfer 98.3 0.0001 3.4E-09 67.5 21.0 157 2-181 27-188 (243)
272 1fwx_A Nitrous oxide reductase 98.2 1.5E-05 5.1E-10 82.1 15.1 158 5-172 145-361 (595)
273 1fwx_A Nitrous oxide reductase 98.2 4.3E-05 1.5E-09 78.7 18.3 222 5-258 99-380 (595)
274 1npe_A Nidogen, entactin; glyc 98.2 0.0011 3.8E-08 61.8 26.9 226 7-319 1-238 (267)
275 1kb0_A Quinohemoprotein alcoho 98.1 5.6E-05 1.9E-09 81.0 17.5 162 2-180 249-515 (677)
276 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.0007 2.4E-08 66.6 24.4 157 6-180 52-215 (376)
277 3hxj_A Pyrrolo-quinoline quino 98.1 0.00053 1.8E-08 65.8 22.2 184 7-256 107-290 (330)
278 2hz6_A Endoplasmic reticulum t 98.1 3.9E-07 1.3E-11 90.3 -0.6 151 4-180 46-200 (369)
279 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.0019 6.6E-08 63.4 25.7 189 8-257 144-345 (376)
280 1yiq_A Quinohemoprotein alcoho 98.0 0.00022 7.7E-09 76.4 20.2 162 2-180 241-513 (689)
281 1kv9_A Type II quinohemoprotei 98.0 0.00064 2.2E-08 72.6 22.4 165 6-180 116-341 (668)
282 3qqz_A Putative uncharacterize 98.0 0.003 1E-07 58.4 23.7 170 1-179 32-210 (255)
283 2p4o_A Hypothetical protein; p 97.9 0.0091 3.1E-07 56.8 27.7 201 1-253 37-245 (306)
284 2iwa_A Glutamine cyclotransfer 97.9 0.0018 6.2E-08 60.2 21.4 211 41-318 22-236 (266)
285 4hw6_A Hypothetical protein, I 97.9 0.0052 1.8E-07 61.8 25.9 151 1-171 144-303 (433)
286 3tc9_A Hypothetical hydrolase; 97.9 0.0066 2.3E-07 61.0 26.4 152 1-171 142-300 (430)
287 1ijq_A LDL receptor, low-densi 97.8 0.021 7.3E-07 54.6 28.2 179 16-249 9-195 (316)
288 3hxj_A Pyrrolo-quinoline quino 97.8 0.0011 3.6E-08 63.6 18.2 142 55-256 109-250 (330)
289 1w6s_A Methanol dehydrogenase 97.8 0.005 1.7E-07 64.6 24.4 160 10-180 124-350 (599)
290 1k3i_A Galactose oxidase precu 97.8 0.0011 3.6E-08 70.8 19.7 113 2-117 192-324 (656)
291 2ad6_A Methanol dehydrogenase 97.8 0.0032 1.1E-07 65.8 22.9 164 7-180 115-343 (571)
292 3p5b_L Low density lipoprotein 97.7 0.033 1.1E-06 55.2 28.1 186 9-250 85-278 (400)
293 1flg_A Protein (quinoprotein e 97.6 0.066 2.2E-06 55.9 29.0 167 7-181 117-364 (582)
294 3qqz_A Putative uncharacterize 97.5 0.051 1.8E-06 50.0 25.2 129 34-171 21-150 (255)
295 3v65_B Low-density lipoprotein 97.5 0.052 1.8E-06 53.5 26.2 136 15-171 94-233 (386)
296 3nol_A Glutamine cyclotransfer 97.5 0.0076 2.6E-07 55.5 17.6 143 4-161 93-244 (262)
297 3sre_A PON1, serum paraoxonase 97.4 0.03 1E-06 54.3 22.6 152 2-171 56-251 (355)
298 1ijq_A LDL receptor, low-densi 97.4 0.048 1.6E-06 52.1 23.9 152 1-172 35-195 (316)
299 3v64_C Agrin; beta propeller, 97.4 0.032 1.1E-06 54.2 22.9 151 1-172 78-234 (349)
300 3v64_C Agrin; beta propeller, 97.4 0.11 3.9E-06 50.2 27.5 136 15-171 51-190 (349)
301 3p5b_L Low density lipoprotein 97.4 0.059 2E-06 53.4 24.3 151 1-172 117-277 (400)
302 3kya_A Putative phosphatase; s 97.3 0.12 4.2E-06 52.3 26.4 167 1-171 144-340 (496)
303 1kv9_A Type II quinohemoprotei 97.3 0.003 1E-07 67.5 15.3 162 2-180 236-496 (668)
304 2p4o_A Hypothetical protein; p 97.3 0.025 8.5E-07 53.7 20.5 154 1-175 77-244 (306)
305 3v65_B Low-density lipoprotein 97.3 0.024 8.3E-07 55.9 20.8 151 1-172 121-277 (386)
306 2fp8_A Strictosidine synthase; 97.3 0.029 9.8E-07 53.6 20.8 159 2-180 86-276 (322)
307 2xe4_A Oligopeptidase B; hydro 97.3 0.0019 6.5E-08 70.0 13.4 109 2-116 180-304 (751)
308 3m0c_C LDL receptor, low-densi 97.2 0.19 6.5E-06 54.3 28.2 182 14-250 401-590 (791)
309 1flg_A Protein (quinoprotein e 97.2 0.016 5.6E-07 60.5 19.0 147 17-180 291-524 (582)
310 3mbr_X Glutamine cyclotransfer 97.2 0.027 9.1E-07 51.4 17.6 142 5-161 72-223 (243)
311 3sov_A LRP-6, low-density lipo 97.2 0.087 3E-06 50.4 22.3 150 2-172 41-197 (318)
312 3nok_A Glutaminyl cyclase; bet 97.1 0.027 9.4E-07 51.8 17.5 142 4-160 102-253 (268)
313 4a2l_A BT_4663, two-component 97.1 0.25 8.7E-06 53.6 28.4 200 4-253 365-575 (795)
314 2ad6_A Methanol dehydrogenase 97.1 0.017 5.8E-07 60.3 18.1 146 18-180 273-502 (571)
315 1n7d_A LDL receptor, low-densi 97.0 0.0067 2.3E-07 65.0 14.0 200 1-257 411-622 (699)
316 4a2l_A BT_4663, two-component 97.0 0.26 8.9E-06 53.5 27.0 199 4-252 318-529 (795)
317 3amr_A 3-phytase; beta-propell 96.9 0.1 3.4E-06 50.2 19.8 187 55-320 42-264 (355)
318 3sov_A LRP-6, low-density lipo 96.9 0.33 1.1E-05 46.3 23.9 180 16-249 12-197 (318)
319 3amr_A 3-phytase; beta-propell 96.9 0.3 1E-05 46.8 22.8 200 6-256 39-271 (355)
320 1w6s_A Methanol dehydrogenase 96.8 0.048 1.7E-06 57.0 18.4 78 3-82 248-350 (599)
321 3m0c_C LDL receptor, low-densi 96.8 0.17 5.9E-06 54.7 22.6 152 2-172 430-589 (791)
322 4hw6_A Hypothetical protein, I 96.7 0.087 3E-06 52.8 19.0 163 1-171 233-432 (433)
323 3tc9_A Hypothetical hydrolase; 96.7 0.049 1.7E-06 54.6 16.8 153 42-248 139-300 (430)
324 1k3i_A Galactose oxidase precu 96.6 0.079 2.7E-06 56.2 18.8 101 64-177 220-328 (656)
325 3v9f_A Two-component system se 96.6 0.26 8.7E-06 53.4 23.2 201 4-260 415-621 (781)
326 2p9w_A MAL S 1 allergenic prot 96.6 0.079 2.7E-06 50.5 16.2 159 2-171 19-214 (334)
327 1n7d_A LDL receptor, low-densi 96.5 0.009 3.1E-07 64.0 10.3 137 15-170 384-526 (699)
328 2xe4_A Oligopeptidase B; hydro 96.4 0.098 3.4E-06 56.5 17.8 114 1-115 226-353 (751)
329 4a0p_A LRP6, LRP-6, low-densit 96.2 0.93 3.2E-05 47.6 23.7 151 1-172 42-197 (628)
330 3pbp_A Nucleoporin NUP82; beta 96.1 0.62 2.1E-05 45.8 19.9 155 5-168 30-208 (452)
331 2xzh_A Clathrin heavy chain 1; 96.1 1 3.4E-05 42.7 25.9 168 3-179 74-297 (365)
332 3s94_A LRP-6, low-density lipo 96.0 1.2 4.3E-05 46.5 23.1 152 1-172 45-202 (619)
333 3v9f_A Two-component system se 95.9 1.1 3.6E-05 48.5 23.4 198 4-254 321-529 (781)
334 4a0p_A LRP6, LRP-6, low-densit 95.6 2.8 9.6E-05 43.9 27.7 185 9-250 8-198 (628)
335 1bpo_A Protein (clathrin); cla 95.5 2.2 7.4E-05 42.1 23.3 168 3-179 73-296 (494)
336 2vpj_A Kelch-like protein 12; 95.5 1.6 5.6E-05 40.5 20.1 153 5-177 61-236 (301)
337 2vpj_A Kelch-like protein 12; 95.4 1.7 5.9E-05 40.4 21.3 152 6-177 14-189 (301)
338 3kya_A Putative phosphatase; s 95.2 0.85 2.9E-05 46.2 17.5 170 1-178 252-481 (496)
339 2p9w_A MAL S 1 allergenic prot 94.8 0.17 5.9E-06 48.1 10.6 108 4-116 74-215 (334)
340 2nnz_A Hypothetical protein; b 94.8 0.088 3E-06 44.0 7.5 105 355-488 27-142 (153)
341 3ii7_A Kelch-like protein 7; p 94.7 2.1 7.2E-05 39.9 18.2 152 5-176 54-229 (306)
342 2xn4_A Kelch-like protein 2; s 94.3 1.8 6E-05 40.4 16.7 153 6-177 61-234 (302)
343 3das_A Putative oxidoreductase 94.3 1.9 6.4E-05 41.5 16.7 102 1-104 37-158 (347)
344 1zgk_A Kelch-like ECH-associat 94.2 2 6.8E-05 40.2 16.9 151 6-176 70-244 (308)
345 1cru_A Protein (soluble quinop 94.2 2.2 7.6E-05 42.7 17.9 105 1-105 32-163 (454)
346 2ism_A Putative oxidoreductase 93.8 1.4 4.9E-05 42.4 15.3 100 1-104 36-153 (352)
347 3kop_A Uncharacterized protein 93.5 0.78 2.7E-05 38.6 10.6 116 355-489 19-166 (188)
348 4asc_A Kelch repeat and BTB do 93.5 4.8 0.00016 37.6 18.1 153 5-177 44-226 (315)
349 3s25_A Hypothetical 7-bladed b 93.4 5.3 0.00018 37.5 19.9 100 3-116 60-176 (302)
350 1xi4_A Clathrin heavy chain; a 93.3 1.9 6.7E-05 48.9 16.6 105 3-116 73-188 (1630)
351 3pbp_A Nucleoporin NUP82; beta 93.2 2.7 9.2E-05 41.4 15.5 115 49-172 30-158 (452)
352 3ii7_A Kelch-like protein 7; p 93.1 5.4 0.00019 37.0 22.6 151 7-177 12-183 (306)
353 3a9g_A Putative uncharacterize 93.1 2 6.7E-05 41.5 14.9 100 1-104 34-153 (354)
354 3s94_A LRP-6, low-density lipo 93.0 9.8 0.00034 39.7 25.7 124 16-158 325-451 (619)
355 3s25_A Hypothetical 7-bladed b 92.2 7.4 0.00025 36.4 17.2 141 3-176 21-180 (302)
356 2xn4_A Kelch-like protein 2; s 92.1 3 0.0001 38.8 14.4 152 5-176 107-280 (302)
357 2xbg_A YCF48-like protein; pho 92.0 8.2 0.00028 36.4 22.6 136 2-162 42-183 (327)
358 1zgk_A Kelch-like ECH-associat 91.4 2.9 9.8E-05 39.1 13.5 152 6-177 121-292 (308)
359 2woz_A Kelch repeat and BTB do 91.1 8.7 0.0003 35.8 16.6 153 5-176 55-235 (318)
360 2zwa_A Leucine carboxyl methyl 90.2 11 0.00038 39.8 18.1 158 5-174 396-579 (695)
361 2xbg_A YCF48-like protein; pho 89.9 13 0.00045 34.9 24.3 109 39-169 121-231 (327)
362 3ei3_A DNA damage-binding prot 89.7 30 0.001 39.0 27.4 62 7-71 571-635 (1158)
363 4asc_A Kelch repeat and BTB do 89.7 3.8 0.00013 38.3 12.7 153 6-178 98-283 (315)
364 2uvk_A YJHT; unknown function, 88.7 5.3 0.00018 38.0 13.1 26 6-31 65-100 (357)
365 2woz_A Kelch repeat and BTB do 88.6 4.9 0.00017 37.6 12.6 153 6-178 109-293 (318)
366 2g8s_A Glucose/sorbosone dehyd 88.3 3.8 0.00013 39.4 11.7 102 1-105 23-149 (353)
367 3das_A Putative oxidoreductase 88.0 18 0.00061 34.5 16.0 60 81-152 27-90 (347)
368 1tl2_A L10, protein (tachylect 86.5 17 0.00058 32.3 14.0 103 1-112 46-159 (236)
369 2uvk_A YJHT; unknown function, 85.7 6.9 0.00023 37.2 12.0 28 151-178 315-348 (357)
370 2ism_A Putative oxidoreductase 85.4 18 0.0006 34.5 14.7 72 86-172 31-114 (352)
371 1zx8_A Hypothetical protein TM 84.3 5.5 0.00019 32.2 8.6 101 357-488 12-123 (136)
372 2be1_A Serine/threonine-protei 84.0 20 0.00069 34.0 14.0 108 8-119 11-133 (339)
373 1cru_A Protein (soluble quinop 83.4 21 0.00072 35.5 14.6 56 85-152 26-87 (454)
374 3a9g_A Putative uncharacterize 82.8 24 0.00083 33.6 14.4 55 86-152 29-83 (354)
375 2zwa_A Leucine carboxyl methyl 81.3 10 0.00035 40.2 11.9 162 6-176 451-639 (695)
376 3sbq_A Nitrous-oxide reductase 79.9 11 0.00038 38.4 10.6 101 1-104 328-453 (638)
377 3ei3_A DNA damage-binding prot 79.8 53 0.0018 37.0 17.5 143 7-171 844-998 (1158)
378 1tl2_A L10, protein (tachylect 76.0 12 0.00041 33.3 8.6 104 41-166 42-157 (236)
379 2g8s_A Glucose/sorbosone dehyd 75.3 41 0.0014 32.0 13.3 28 86-114 18-46 (353)
380 2xzh_A Clathrin heavy chain 1; 74.6 59 0.002 30.8 15.0 111 3-118 159-292 (365)
381 4gq2_M Nucleoporin NUP120; bet 74.0 4.5 0.00015 44.7 6.7 39 142-180 236-274 (950)
382 3f7f_A Nucleoporin NUP120; nuc 69.6 16 0.00054 38.5 9.1 33 4-36 228-260 (729)
383 2be1_A Serine/threonine-protei 69.2 36 0.0012 32.3 11.0 68 98-177 11-81 (339)
384 3q6k_A 43.2 kDa salivary prote 69.1 69 0.0024 30.9 13.1 166 119-319 121-306 (381)
385 3sre_A PON1, serum paraoxonase 69.0 81 0.0028 30.0 18.0 134 16-169 138-295 (355)
386 3f7f_A Nucleoporin NUP120; nuc 66.8 9.7 0.00033 40.1 6.9 37 143-181 223-259 (729)
387 1xi4_A Clathrin heavy chain; a 66.6 70 0.0024 36.7 13.8 113 61-178 177-295 (1630)
388 4fhn_B Nucleoporin NUP120; pro 65.0 4.7 0.00016 45.6 4.4 39 143-181 239-277 (1139)
389 1bpo_A Protein (clathrin); cla 59.8 1.4E+02 0.0048 29.5 17.2 113 3-118 158-291 (494)
390 4gq2_M Nucleoporin NUP120; bet 58.3 32 0.0011 37.8 9.5 34 3-36 243-276 (950)
391 3q6k_A 43.2 kDa salivary prote 55.0 1.5E+02 0.0052 28.4 18.5 145 18-172 124-306 (381)
392 3sbq_A Nitrous-oxide reductase 54.9 56 0.0019 33.4 9.6 80 88-172 325-408 (638)
393 2wg3_C Hedgehog-interacting pr 53.8 1.2E+02 0.004 30.1 12.0 107 1-107 19-160 (463)
394 2wg3_C Hedgehog-interacting pr 43.0 2.6E+02 0.0087 27.6 13.7 30 86-115 14-44 (463)
395 4fhn_B Nucleoporin NUP120; pro 42.0 26 0.0009 39.4 5.6 34 3-36 245-278 (1139)
396 2khf_A PLNJ; anti-microbial, b 36.4 11 0.00037 19.6 0.6 16 382-397 3-18 (26)
397 3zwu_A Alkaline phosphatase PH 28.2 1.5E+02 0.0053 30.3 8.2 57 88-159 478-548 (592)
398 3ott_A Two-component system se 26.6 5.6E+02 0.019 26.6 20.1 152 5-174 382-547 (758)
399 3ott_A Two-component system se 25.3 5.9E+02 0.02 26.5 21.9 147 5-175 72-223 (758)
400 2k9u_B Filamin-binding LIM pro 24.2 44 0.0015 17.9 1.7 13 453-465 8-20 (26)
401 1suu_A DNA gyrase subunit A; t 22.9 4.4E+02 0.015 24.1 15.1 155 5-171 6-180 (312)
402 4a9v_A PHOX; hydrolase, beta-p 21.3 2.7E+02 0.0091 28.5 8.2 59 87-160 477-549 (592)
No 1
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=3.2e-50 Score=350.75 Aligned_cols=174 Identities=67% Similarity=1.154 Sum_probs=155.9
Q ss_pred CCCccccccccccCCCccCCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCC
Q 010302 336 KPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLG 415 (513)
Q Consensus 336 ~p~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~ 415 (513)
+|+++++.+++ ..+.+......|+++|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+
T Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~ 79 (176)
T 2a2n_A 2 SPSKEEVMAAT--QAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTG 79 (176)
T ss_dssp -------------CCCSCCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTS
T ss_pred Ccchhhhhhcc--cCCCCCCCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCC
Confidence 57777777765 3556777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCC-
Q 010302 416 DGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTD- 494 (513)
Q Consensus 416 ~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~- 494 (513)
++.+++++||..|++|+...++|.++|+|+||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++
T Consensus 80 ~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~ 159 (176)
T 2a2n_A 80 TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNP 159 (176)
T ss_dssp SSSCCCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred CCCCCCcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccC
Confidence 9999999999999999977899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccCeEEEEEEEc
Q 010302 495 KNDKPYQDVKILNVTVP 511 (513)
Q Consensus 495 ~~~~p~~~i~I~~~~v~ 511 (513)
++++|.++|+|.+++|.
T Consensus 160 ~~~~P~~~v~I~~v~v~ 176 (176)
T 2a2n_A 160 KTDKPYEDVSIINITVK 176 (176)
T ss_dssp TTCCBSSCCBEEEEEEC
T ss_pred CCCccCCCeEEEEEEEC
Confidence 68999999999999874
No 2
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=1.6e-49 Score=341.77 Aligned_cols=157 Identities=66% Similarity=1.128 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccC
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
.+..|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.+++++|+..|++|..+.
T Consensus 4 ~~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 83 (160)
T 2fu0_A 4 TPKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDH 83 (160)
T ss_dssp -CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTT
T ss_pred CCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999778
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++++++|.++|+|.+|+|+.
T Consensus 84 l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~ 160 (160)
T 2fu0_A 84 LNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160 (160)
T ss_dssp BCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred cccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999863
No 3
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=5.3e-49 Score=340.63 Aligned_cols=156 Identities=51% Similarity=0.878 Sum_probs=151.4
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccC
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+||+||||+.+++.+++++|+..|++|..+.
T Consensus 10 ~~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 89 (166)
T 2x7k_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (166)
T ss_dssp CCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTT
T ss_pred CCCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++++++|.++|+|.+|+|+
T Consensus 90 l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165 (166)
T ss_dssp SCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred cCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence 9999899999999999999999999999999999999999999999999999999999998999999999999987
No 4
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=7e-49 Score=338.99 Aligned_cols=155 Identities=52% Similarity=0.913 Sum_probs=150.2
Q ss_pred CEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCC
Q 010302 358 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLR 437 (513)
Q Consensus 358 ~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 437 (513)
+.|+|+|+.|+|+||||++.||+||+||++||+++||+|+.||||+|+||+||||+.+++.|++++|+..+++|..+.++
T Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~ 80 (161)
T 2ok3_A 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCC
T ss_pred CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCcCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999878899
Q ss_pred CCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCC-CCcccCeEEEEEEEcc
Q 010302 438 HDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN-DKPYQDVKILNVTVPK 512 (513)
Q Consensus 438 ~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~-~~p~~~i~I~~~~v~~ 512 (513)
|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++++ ++|.++|+|.+|+|+.
T Consensus 81 h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~ 156 (161)
T 2ok3_A 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_dssp SCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred cCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999987 9999999999999874
No 5
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=2.9e-48 Score=342.66 Aligned_cols=161 Identities=47% Similarity=0.825 Sum_probs=154.0
Q ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccc
Q 010302 352 VTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDE 431 (513)
Q Consensus 352 ~~~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e 431 (513)
.++.....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||..|++|
T Consensus 14 ~~~~~~~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE 93 (197)
T 1zkc_A 14 LVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDE 93 (197)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCC
T ss_pred CCCCCCcEEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCccccc
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCC-CCcccCeEEEEEEE
Q 010302 432 FHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN-DKPYQDVKILNVTV 510 (513)
Q Consensus 432 ~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~-~~p~~~i~I~~~~v 510 (513)
+.+.++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++.+ ++|.++|+|.+|+|
T Consensus 94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v 173 (197)
T 1zkc_A 94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173 (197)
T ss_dssp CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999987 99999999999998
Q ss_pred cc
Q 010302 511 PK 512 (513)
Q Consensus 511 ~~ 512 (513)
+.
T Consensus 174 ~~ 175 (197)
T 1zkc_A 174 FV 175 (197)
T ss_dssp EE
T ss_pred Ec
Confidence 74
No 6
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=3e-48 Score=342.83 Aligned_cols=157 Identities=47% Similarity=0.768 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccC
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||..|++|+.+.
T Consensus 37 ~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 116 (196)
T 2b71_A 37 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKE 116 (196)
T ss_dssp HSCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTT
T ss_pred CCcEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
++|.++|+||||+.+|++++|||||+++++|+||++|+|||||++||+||++|++++++++++|+++|+|.+|+|+.
T Consensus 117 l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~ 193 (196)
T 2b71_A 117 LKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193 (196)
T ss_dssp CCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred cCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874
No 7
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=3.7e-48 Score=340.53 Aligned_cols=159 Identities=42% Similarity=0.769 Sum_probs=152.1
Q ss_pred CCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccc
Q 010302 354 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFH 433 (513)
Q Consensus 354 ~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 433 (513)
......|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||..|++|..
T Consensus 13 ~~~~~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 92 (185)
T 2poe_A 13 NLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIY 92 (185)
T ss_dssp --CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCCC
T ss_pred CCCceEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCccccccc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCceEEEEeccC----CCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 010302 434 KSLRHDRPFTVSMANAG----PNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 509 (513)
Q Consensus 434 ~~~~~~~~g~v~~~~~~----~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~ 509 (513)
+.++|.++|+||||+.+ |++++|||||+++++|+||++|+|||+|++||+||++|++++++++++|.++|+|.+|+
T Consensus 93 ~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~ 172 (185)
T 2poe_A 93 PELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIV 172 (185)
T ss_dssp TTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEE
T ss_pred CCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEE
Confidence 89999999999999999 99999999999999999999999999999999999999999999889999999999999
Q ss_pred Ecc
Q 010302 510 VPK 512 (513)
Q Consensus 510 v~~ 512 (513)
|+.
T Consensus 173 i~~ 175 (185)
T 2poe_A 173 IHS 175 (185)
T ss_dssp EEC
T ss_pred EEC
Confidence 874
No 8
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=3.4e-48 Score=343.32 Aligned_cols=158 Identities=50% Similarity=0.865 Sum_probs=152.7
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccC
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.+++++|+..|++|+.+.
T Consensus 10 ~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~~~ 89 (203)
T 2k7n_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (203)
T ss_dssp CCSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCCCS
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEccC
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPKS 513 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~~ 513 (513)
++|.++|+|+||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++++++|+++|+|.+|+|+++
T Consensus 90 l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~ 167 (203)
T 2k7n_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGG 167 (203)
T ss_dssp SCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCC
T ss_pred ccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEec
Confidence 999989999999999999999999999999999999999999999999999999999998899999999999999864
No 9
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=2.4e-47 Score=340.98 Aligned_cols=158 Identities=40% Similarity=0.639 Sum_probs=145.0
Q ss_pred CCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEec-----cCCCCCCCCcccC-----
Q 010302 355 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTG-----DPLGDGTGGQSIW----- 424 (513)
Q Consensus 355 ~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G-----~~~~~~~~~~~~~----- 424 (513)
.....|+|+|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+|+|||||| ||.+++.|+.++|
T Consensus 4 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~ 83 (201)
T 3bo7_A 4 KKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGF 83 (201)
T ss_dssp -CCEEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSS
T ss_pred CCceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccccc
Confidence 345789999999999999999999999999999999999999999999999999999 9998899999999
Q ss_pred --CCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccC
Q 010302 425 --GREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQD 502 (513)
Q Consensus 425 --~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~ 502 (513)
+..|++|+.+.++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++.+++|.++
T Consensus 84 ~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~ 163 (201)
T 3bo7_A 84 PGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKP 163 (201)
T ss_dssp TTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSC
T ss_pred cCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCC
Confidence 889999988899999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred eEEEEEEEcc
Q 010302 503 VKILNVTVPK 512 (513)
Q Consensus 503 i~I~~~~v~~ 512 (513)
|+|.+|+|+.
T Consensus 164 i~I~~~~v~~ 173 (201)
T 3bo7_A 164 PKVEEIIVFK 173 (201)
T ss_dssp CBEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 9999999874
No 10
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=8.6e-47 Score=332.65 Aligned_cols=155 Identities=50% Similarity=0.848 Sum_probs=145.8
Q ss_pred CCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhh---------------hccccCCceEEEeEeCcEEEeccCCCCCC
Q 010302 354 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHC---------------RNEYYNNLIFHRVIKGFMIQTGDPLGDGT 418 (513)
Q Consensus 354 ~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~---------------~~~~y~~~~~~rv~~~~~iq~G~~~~~~~ 418 (513)
+.....|+|+|+.|+|+||||++.||+||+||++|| +.+||+|+.||||+|+|||||||+.+++.
T Consensus 20 ~~~~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~ 99 (191)
T 1w74_A 20 PLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGR 99 (191)
T ss_dssp -CCSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSS
T ss_pred CCCCeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCC
Confidence 344578999999999999999999999999999999 45899999999999999999999988877
Q ss_pred CCcccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEc--CHHHHHHHhcCCCCCC
Q 010302 419 GGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIK--GMDVVQAIEKVKTDKN 496 (513)
Q Consensus 419 ~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~--G~~~l~~i~~~~~~~~ 496 (513)
++ |+..|++|+.+.++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++ ||+||++|++++++.+
T Consensus 100 gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~ 176 (191)
T 1w74_A 100 GG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN 176 (191)
T ss_dssp CC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTT
T ss_pred CC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCC
Confidence 77 588899998789999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred CCcccCeEEEEEEEc
Q 010302 497 DKPYQDVKILNVTVP 511 (513)
Q Consensus 497 ~~p~~~i~I~~~~v~ 511 (513)
++|+++|+|.+|+|+
T Consensus 177 ~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 177 DRPTDPVVIESITIS 191 (191)
T ss_dssp SCBSSCCEEEEEEEC
T ss_pred CCcCCCeEEEEEEEC
Confidence 999999999999985
No 11
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=4.6e-46 Score=326.74 Aligned_cols=158 Identities=46% Similarity=0.788 Sum_probs=149.5
Q ss_pred CCCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccc
Q 010302 354 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFH 433 (513)
Q Consensus 354 ~~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 433 (513)
+.....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||..|++|..
T Consensus 21 ~~~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 100 (185)
T 2hq6_A 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFH 100 (185)
T ss_dssp CCCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCB
T ss_pred CCCCCEEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCccccccc
Confidence 34456899999999999999999999999999999999999999999999999999999998999999999999999987
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHH--HHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 434 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDV--VQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 434 ~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~--l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
..++|.++|+||||+.+|++++|||||+++++|+||++|+|||||+ ||++ +++|++++++++++|+++|+|.+|+++
T Consensus 101 ~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~ 179 (185)
T 2hq6_A 101 SRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179 (185)
T ss_dssp TTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEE
T ss_pred cCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEe
Confidence 7899999999999999999999999999999999999999999999 8877 478999999999999999999999987
Q ss_pred c
Q 010302 512 K 512 (513)
Q Consensus 512 ~ 512 (513)
+
T Consensus 180 ~ 180 (185)
T 2hq6_A 180 F 180 (185)
T ss_dssp E
T ss_pred C
Confidence 4
No 12
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=5.4e-46 Score=335.04 Aligned_cols=183 Identities=38% Similarity=0.584 Sum_probs=149.3
Q ss_pred CCcCccCCCCCccccccccccC-CCc---cCCCCCEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhhcc------
Q 010302 328 KGRDIFNEKPPPDELLAVSDIG-NSV---TTSLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRNE------ 392 (513)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~-~~~---~~~~~~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~~~------ 392 (513)
..+++++|+|...........+ .|. .......|.|+++ .|+|+||||++.||+||+||++||+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~ 105 (229)
T 1z81_A 26 DSENKKVENLVLDDNDENTIIPYYLSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNL 105 (229)
T ss_dssp ------------------CCSCCCGGGGSSSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSS
T ss_pred CCccccCCCCccccccccccccccccccccCCCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCC
Confidence 3689999999876555554333 223 2334568888865 999999999999999999999999987
Q ss_pred --ccCCceEEEeEeCcEEEeccC-CCCCCCCcccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCC
Q 010302 393 --YYNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLD 469 (513)
Q Consensus 393 --~y~~~~~~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld 469 (513)
||+|+.||||+|+|||||||+ .+++.|++++|+..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||
T Consensus 106 ~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~dE~-~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LD 184 (229)
T 1z81_A 106 PVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDEN-FDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLD 184 (229)
T ss_dssp BCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCCC-CCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGB
T ss_pred CceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCcccccc-cccccCCCcEEEeccCCCCCcccEEEEECCCCcccC
Confidence 799999999999999999998 4788899999999999996 789999999999999999999999999999999999
Q ss_pred CCCeEEEEEE--cCHHHHHHHhcCCCCCC-CCcccCeEEEEEEEc
Q 010302 470 NKHTVFGRVI--KGMDVVQAIEKVKTDKN-DKPYQDVKILNVTVP 511 (513)
Q Consensus 470 ~~~~vfG~V~--~G~~~l~~i~~~~~~~~-~~p~~~i~I~~~~v~ 511 (513)
++|+|||||+ +|||||++|++++++++ ++|+++|+|.+|+.+
T Consensus 185 g~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l 229 (229)
T 1z81_A 185 GKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229 (229)
T ss_dssp TTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred CCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence 9999999999 99999999999999887 999999999999875
No 13
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=7.4e-46 Score=324.42 Aligned_cols=154 Identities=47% Similarity=0.762 Sum_probs=145.6
Q ss_pred CCEEEEE-----eCCeEEEEEeCCCCChHHHHHHHHhhhccc--------cCCceEEEeEeCcEEEeccCC-CCCCCCcc
Q 010302 357 PDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDPL-GDGTGGQS 422 (513)
Q Consensus 357 ~~~v~~~-----t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~--------y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~ 422 (513)
...|.|+ |+.|+|+||||++.||+||+||++||+++| |+|+.||||+|+|||||||+. +++.|+++
T Consensus 10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~s 89 (177)
T 1mzw_A 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVAS 89 (177)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCC
T ss_pred CCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCc
Confidence 4567776 579999999999999999999999999998 999999999999999999984 77889999
Q ss_pred cCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccC
Q 010302 423 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQD 502 (513)
Q Consensus 423 ~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~ 502 (513)
+|+..|++|. ..++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++++++|.++
T Consensus 90 i~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~ 168 (177)
T 1mzw_A 90 IYRGPFADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLP 168 (177)
T ss_dssp TTSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSC
T ss_pred cCCCcccCcc-cccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCC
Confidence 9999999996 689999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred eEEEEEEEc
Q 010302 503 VKILNVTVP 511 (513)
Q Consensus 503 i~I~~~~v~ 511 (513)
|+|.+|+++
T Consensus 169 v~I~~cG~l 177 (177)
T 1mzw_A 169 VVISQCGEM 177 (177)
T ss_dssp EEEEEEEEC
T ss_pred EEEEeceeC
Confidence 999999875
No 14
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=1.2e-45 Score=321.10 Aligned_cols=154 Identities=47% Similarity=0.751 Sum_probs=144.2
Q ss_pred CCEEEEE-----eCCeEEEEEeCCCCChHHHHHHHHhhhc--cc-cCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCC
Q 010302 357 PDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCRN--EY-YNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGRE 427 (513)
Q Consensus 357 ~~~v~~~-----t~~G~i~i~l~~~~~P~~~~~f~~l~~~--~~-y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~ 427 (513)
...|.|+ |+.|+|+||||++.||+||+||++||++ || |+|+.||||+|+|||||||+. +++.|++++|+..
T Consensus 10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~ 89 (172)
T 2cmt_A 10 LPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRK 89 (172)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred CCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCc
Confidence 4567777 8999999999999999999999999985 78 999999999999999999985 6788899999999
Q ss_pred CccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 010302 428 FEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 507 (513)
Q Consensus 428 ~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~ 507 (513)
|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus 90 f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~ 167 (172)
T 2cmt_A 90 FDDEN-FQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVIISR 167 (172)
T ss_dssp BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEEEE
T ss_pred ccccc-cCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEEEE
Confidence 99996 6899999999999999999999999999999999999999999999999999999999985 589999999999
Q ss_pred EEEcc
Q 010302 508 VTVPK 512 (513)
Q Consensus 508 ~~v~~ 512 (513)
|++++
T Consensus 168 ~g~l~ 172 (172)
T 2cmt_A 168 CGELI 172 (172)
T ss_dssp EEEEC
T ss_pred eEeEC
Confidence 99874
No 15
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=7.4e-46 Score=325.06 Aligned_cols=150 Identities=49% Similarity=0.832 Sum_probs=141.9
Q ss_pred EEEeCCeEEEEEeCCCCChHHHHHHHHhhh-----------ccccCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCCC
Q 010302 361 ILHTTMGDIHMKLYPEECPKTVENFTTHCR-----------NEYYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREF 428 (513)
Q Consensus 361 ~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~-----------~~~y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~ 428 (513)
+..|+.|+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||+. +++.+++++|+..|
T Consensus 18 i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f 97 (179)
T 2wfi_A 18 INNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFF 97 (179)
T ss_dssp ETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCB
T ss_pred ECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCCCcccCCcc
Confidence 335899999999999999999999999996 579999999999999999999985 78889999999999
Q ss_pred ccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEE
Q 010302 429 EDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 508 (513)
Q Consensus 429 ~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~ 508 (513)
++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++++++|+++|+|.+|
T Consensus 98 ~dE~-~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~ 176 (179)
T 2wfi_A 98 EDES-FAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 176 (179)
T ss_dssp CCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEE
T ss_pred cccc-cCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeC
Confidence 9997 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 010302 509 TVP 511 (513)
Q Consensus 509 ~v~ 511 (513)
..+
T Consensus 177 G~l 179 (179)
T 2wfi_A 177 GEL 179 (179)
T ss_dssp EEC
T ss_pred eeC
Confidence 875
No 16
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-46 Score=326.74 Aligned_cols=151 Identities=49% Similarity=0.844 Sum_probs=143.1
Q ss_pred EEEeCCeEEEEEeCCCCChHHHHHHHHhhh-----------ccccCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCCC
Q 010302 361 ILHTTMGDIHMKLYPEECPKTVENFTTHCR-----------NEYYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREF 428 (513)
Q Consensus 361 ~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~-----------~~~y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~ 428 (513)
+..|+.|+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||+. +++.+++++|+..|
T Consensus 28 i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg~~f 107 (192)
T 2he9_A 28 INREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYF 107 (192)
T ss_dssp ETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCB
T ss_pred ECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCCCcccCCcc
Confidence 346899999999999999999999999995 579999999999999999999985 78889999999999
Q ss_pred ccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEE
Q 010302 429 EDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 508 (513)
Q Consensus 429 ~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~ 508 (513)
++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++++++|.++|+|.+|
T Consensus 108 ~dE~-~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~ 186 (192)
T 2he9_A 108 KDEN-FILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDC 186 (192)
T ss_dssp CCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEE
T ss_pred cCcc-ccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEe
Confidence 9997 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcc
Q 010302 509 TVPK 512 (513)
Q Consensus 509 ~v~~ 512 (513)
+++.
T Consensus 187 g~l~ 190 (192)
T 2he9_A 187 GVLA 190 (192)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9875
No 17
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=3e-45 Score=319.36 Aligned_cols=154 Identities=44% Similarity=0.720 Sum_probs=143.4
Q ss_pred CCEEEEE-----eCCeEEEEEeCCCCChHHHHHHHHhhh--ccc-cCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCC
Q 010302 357 PDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGRE 427 (513)
Q Consensus 357 ~~~v~~~-----t~~G~i~i~l~~~~~P~~~~~f~~l~~--~~~-y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~ 427 (513)
...|.|+ |+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+. +++.|++++|+..
T Consensus 11 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~ 90 (173)
T 2r99_A 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKK 90 (173)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred CCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCc
Confidence 4566666 789999999999999999999999995 677 999999999999999999985 6788899999999
Q ss_pred CccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 010302 428 FEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 507 (513)
Q Consensus 428 ~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~ 507 (513)
|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus 91 f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~ 168 (173)
T 2r99_A 91 FDDEN-FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIAD 168 (173)
T ss_dssp BCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEE
T ss_pred ccCcc-cCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEE
Confidence 99996 7889999999999999999999999999999999999999999999999999999999885 489999999999
Q ss_pred EEEcc
Q 010302 508 VTVPK 512 (513)
Q Consensus 508 ~~v~~ 512 (513)
|++++
T Consensus 169 cG~l~ 173 (173)
T 2r99_A 169 CGEYV 173 (173)
T ss_dssp EEECC
T ss_pred eeeEC
Confidence 99874
No 18
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=5.9e-46 Score=322.12 Aligned_cols=150 Identities=52% Similarity=0.862 Sum_probs=142.0
Q ss_pred EEEEeCCeEEEEEeCCCCChHHHHHHHHhh--hccc-cCCceEEEeEeCcEEEecc-CCCCCCCCcccCCCCCccccccC
Q 010302 360 VILHTTMGDIHMKLYPEECPKTVENFTTHC--RNEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 360 v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~--~~~~-y~~~~~~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
.+..|+.|+|+||||++.||+||+||++|| +.+| |+|+.||||+|+||||||| +.+++.|++++|+..|++|. ..
T Consensus 19 ~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~~ 97 (172)
T 2haq_A 19 MIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADEN-LN 97 (172)
T ss_dssp EETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCCC-CC
T ss_pred EECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCcC-CC
Confidence 344689999999999999999999999999 7899 9999999999999999999 57788899999999999994 78
Q ss_pred CCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 436 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 436 ~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
++|. +|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++++++|.++|+|.+|+++
T Consensus 98 l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l 172 (172)
T 2haq_A 98 VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172 (172)
T ss_dssp SCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred cccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence 9999 89999999999999999999999999999999999999999999999999999988899999999999875
No 19
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=2.4e-45 Score=321.63 Aligned_cols=148 Identities=53% Similarity=0.851 Sum_probs=140.8
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhhc--------c---ccCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCCCccc
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCRN--------E---YYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREFEDE 431 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~~--------~---~y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~~~e 431 (513)
|+.|+|+||||++.||+||+||++||++ + ||+|+.||||+|+|||||||+. +++.+++++|+..|++|
T Consensus 18 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE 97 (177)
T 1a58_A 18 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE 97 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCCCTTSSCBCCC
T ss_pred EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCc
Confidence 6799999999999999999999999985 4 8999999999999999999985 78889999999999999
Q ss_pred cccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 432 FHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 432 ~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
. ..++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++++++|.++|+|.+|+++
T Consensus 98 ~-~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~l 176 (177)
T 1a58_A 98 E-FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176 (177)
T ss_dssp C-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred c-cCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEEE
Confidence 7 578999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 010302 512 K 512 (513)
Q Consensus 512 ~ 512 (513)
.
T Consensus 177 ~ 177 (177)
T 1a58_A 177 V 177 (177)
T ss_dssp C
T ss_pred C
Confidence 3
No 20
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=2.1e-45 Score=323.97 Aligned_cols=147 Identities=54% Similarity=0.858 Sum_probs=141.1
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhh--ccc-cCCceEEEeEeCcEEEecc-CCCCCCCCcccCCCCCccccccCCCCC
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHD 439 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~--~~~-y~~~~~~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~~~~~ 439 (513)
|+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||||||| +.+++.|+.++|+..|++|. ..++|.
T Consensus 27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~~l~h~ 105 (188)
T 3ich_A 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN-FKLKHY 105 (188)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCcccccc-cCcccC
Confidence 789999999999999999999999995 689 9999999999999999999 57888999999999999994 789999
Q ss_pred CceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 010302 440 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 511 (513)
Q Consensus 440 ~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~ 511 (513)
++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++.+++|+++|+|.+|+++
T Consensus 106 ~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l 177 (188)
T 3ich_A 106 GPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177 (188)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred CCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEE
Confidence 999999999999999999999999999999999999999999999999999999988899999999999986
No 21
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=3.5e-45 Score=318.40 Aligned_cols=153 Identities=48% Similarity=0.809 Sum_probs=143.2
Q ss_pred CCEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhh-ccc--------cCCceEEEeEeCcEEEeccCC-CCCCCCc
Q 010302 357 PDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCR-NEY--------YNNLIFHRVIKGFMIQTGDPL-GDGTGGQ 421 (513)
Q Consensus 357 ~~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~-~~~--------y~~~~~~rv~~~~~iq~G~~~-~~~~~~~ 421 (513)
+..|.|+++ .|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+. +++.|++
T Consensus 3 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~ 82 (170)
T 1qng_A 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGE 82 (170)
T ss_dssp SCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred CCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCc
Confidence 346777766 9999999999999999999999998 488 999999999999999999984 7788999
Q ss_pred ccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCccc
Q 010302 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQ 501 (513)
Q Consensus 422 ~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~ 501 (513)
++|+..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++ ++++|.+
T Consensus 83 si~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~ 160 (170)
T 1qng_A 83 SIYGRSFTDEN-FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKR 160 (170)
T ss_dssp BTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSS
T ss_pred cccCCcccccc-cccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCC
Confidence 99999999996 789999999999999999999999999999999999999999999999999999999999 6799999
Q ss_pred CeEEEEEEEc
Q 010302 502 DVKILNVTVP 511 (513)
Q Consensus 502 ~i~I~~~~v~ 511 (513)
+|+|.+|+++
T Consensus 161 ~v~I~~cG~l 170 (170)
T 1qng_A 161 SVVITDCGEL 170 (170)
T ss_dssp CEEEEEEEEC
T ss_pred CeEEEeceeC
Confidence 9999999875
No 22
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=4.5e-45 Score=318.64 Aligned_cols=153 Identities=49% Similarity=0.805 Sum_probs=142.7
Q ss_pred CEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhhc--c--------ccCCceEEEeEeCcEEEeccCC-CCCCCCc
Q 010302 358 DNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRN--E--------YYNNLIFHRVIKGFMIQTGDPL-GDGTGGQ 421 (513)
Q Consensus 358 ~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~~--~--------~y~~~~~~rv~~~~~iq~G~~~-~~~~~~~ 421 (513)
..|.|+++ .|+|+||||++.||+||+||++||++ + ||+|+.||||+|+|||||||+. +++.|++
T Consensus 4 ~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~ 83 (173)
T 2igv_A 4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGE 83 (173)
T ss_dssp CEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred CEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCC
Confidence 45666655 99999999999999999999999987 5 7999999999999999999985 6788999
Q ss_pred ccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCccc
Q 010302 422 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQ 501 (513)
Q Consensus 422 ~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~ 501 (513)
++|+..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|.+
T Consensus 84 siyg~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~ 161 (173)
T 2igv_A 84 SIYGEKFPDEN-FKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVK 161 (173)
T ss_dssp BTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSS
T ss_pred ccCCCcccCcc-cccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCC
Confidence 99999999996 6899999999999999999999999999999999999999999999999999999999984 589999
Q ss_pred CeEEEEEEEcc
Q 010302 502 DVKILNVTVPK 512 (513)
Q Consensus 502 ~i~I~~~~v~~ 512 (513)
+|+|.+|++++
T Consensus 162 ~v~I~~~g~l~ 172 (173)
T 2igv_A 162 DCMIADCGQLK 172 (173)
T ss_dssp CEEEEEEEEEC
T ss_pred CEEEEEeEEEc
Confidence 99999999876
No 23
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=8.5e-45 Score=314.38 Aligned_cols=147 Identities=48% Similarity=0.793 Sum_probs=139.6
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhh--ccc-cCCceEEEeEeCcEEEeccCC-CCCCCCcccCCCCCccccccCCCCC
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREFEDEFHKSLRHD 439 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~--~~~-y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~~~e~~~~~~~~ 439 (513)
|+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||+||||+. +++.+++++|+..|++|. ..++|.
T Consensus 15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~~l~h~ 93 (165)
T 2z6w_A 15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDEN-FTLKHV 93 (165)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCcc-cccccC
Confidence 478999999999999999999999999 899 999999999999999999984 678889999999999995 789999
Q ss_pred CceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 440 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 440 ~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++ ++++|.++|+|.+|++++
T Consensus 94 ~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l~ 165 (165)
T 2z6w_A 94 GPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQLS 165 (165)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEECC
T ss_pred CCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeEEEC
Confidence 999999999999999999999999999999999999999999999999999986 679999999999999874
No 24
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=3.2e-45 Score=319.29 Aligned_cols=153 Identities=37% Similarity=0.551 Sum_probs=140.6
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccC
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
+.+.|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.... +...++.++++|....
T Consensus 2 p~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~--~~~~~~~~~~~E~~~~ 79 (167)
T 3s6m_A 2 PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL--KQKPTDAPIANEANNG 79 (167)
T ss_dssp CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTT--EECCCCCCBCCCGGGC
T ss_pred CCcEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCC--CCCCCCCccCCccccc
Confidence 45789999999999999999999999999999999999999999999999999999986543 2345678899998778
Q ss_pred CCCCCceEEEEec-cCCCCCCceEEEEecCCCCCCCC--------CeEEEEEEcCHHHHHHHhcCCCCC----CCCcccC
Q 010302 436 LRHDRPFTVSMAN-AGPNTNGSQFFITTVATPWLDNK--------HTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQD 502 (513)
Q Consensus 436 ~~~~~~g~v~~~~-~~~~~~~s~f~i~~~~~~~ld~~--------~~vfG~V~~G~~~l~~i~~~~~~~----~~~p~~~ 502 (513)
++| .+|+||||+ .+|++++|||||++.++++||++ |+|||+|++|||||++|+++++++ +++|+++
T Consensus 80 l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~ 158 (167)
T 3s6m_A 80 LKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDD 158 (167)
T ss_dssp CCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSC
T ss_pred ccC-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCC
Confidence 887 679999999 57999999999999999999998 999999999999999999999987 6899999
Q ss_pred eEEEEEEEc
Q 010302 503 VKILNVTVP 511 (513)
Q Consensus 503 i~I~~~~v~ 511 (513)
|+|.+|+|+
T Consensus 159 v~I~~~~il 167 (167)
T 3s6m_A 159 VVIEKAVVV 167 (167)
T ss_dssp CEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999985
No 25
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=6.4e-45 Score=315.60 Aligned_cols=147 Identities=48% Similarity=0.799 Sum_probs=140.5
Q ss_pred eCCeEEEEEeCCCCChHHHHHHHHhhh--ccc-cCCceEEEeEeCcEEEecc-CCCCCCCCcccCCCCCccccccCCCCC
Q 010302 364 TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHD 439 (513)
Q Consensus 364 t~~G~i~i~l~~~~~P~~~~~f~~l~~--~~~-y~~~~~~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~~~~~ 439 (513)
|+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||+|||| +.+++.+++++|+..+++|. ..++|.
T Consensus 14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE~-~~l~h~ 92 (164)
T 3pmp_A 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADEN-FQVKHT 92 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCccccccc-cccCcC
Confidence 999999999999999999999999999 788 9999999999999999999 57788999999999999995 889999
Q ss_pred CceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 440 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 440 ~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
++|+||||+.+|++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+|+++.
T Consensus 93 ~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~l~ 164 (164)
T 3pmp_A 93 KPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGTVA 164 (164)
T ss_dssp STTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC-
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeEEC
Confidence 9999999999999999999999999999999999999999999999999999986 69999999999999874
No 26
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=2e-45 Score=318.78 Aligned_cols=151 Identities=40% Similarity=0.619 Sum_probs=139.1
Q ss_pred EEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccCCCC
Q 010302 359 NVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRH 438 (513)
Q Consensus 359 ~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 438 (513)
.|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+... .+.++++..|++|....++|
T Consensus 1 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g~~~~dE~~~~l~~ 78 (164)
T 1lop_A 1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATKEPIKNEANNGLKN 78 (164)
T ss_dssp CEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCCCCBCCCCCSSCCC
T ss_pred CEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCCCcccccccccccc
Confidence 4899999999999999999999999999999999999999999999999999998632 24567789999998777888
Q ss_pred CCceEEEEecc-CCCCCCceEEEEecCCCCCCCC--------CeEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeEE
Q 010302 439 DRPFTVSMANA-GPNTNGSQFFITTVATPWLDNK--------HTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKI 505 (513)
Q Consensus 439 ~~~g~v~~~~~-~~~~~~s~f~i~~~~~~~ld~~--------~~vfG~V~~G~~~l~~i~~~~~~~----~~~p~~~i~I 505 (513)
. +|+||||+. +|++++|||||+++++|+||++ |+|||+|++|||||++|++++++. +++|.++|+|
T Consensus 79 ~-~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I 157 (164)
T 1lop_A 79 T-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157 (164)
T ss_dssp C-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEE
T ss_pred C-ccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEE
Confidence 5 799999975 7999999999999999999998 999999999999999999999975 5899999999
Q ss_pred EEEEEcc
Q 010302 506 LNVTVPK 512 (513)
Q Consensus 506 ~~~~v~~ 512 (513)
.+|+|++
T Consensus 158 ~~~~v~~ 164 (164)
T 1lop_A 158 ESVTVSE 164 (164)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999975
No 27
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=5.4e-45 Score=330.78 Aligned_cols=156 Identities=39% Similarity=0.681 Sum_probs=146.5
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccC--CCCCccccc
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIW--GREFEDEFH 433 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~--~~~~~~e~~ 433 (513)
....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|+.++| |..|++|..
T Consensus 20 ~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~dE~~ 99 (232)
T 3bkp_A 20 TRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETH 99 (232)
T ss_dssp CBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCCCCC
T ss_pred CCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCCccc
Confidence 446799999999999999999999999999999999999999999999999999999999999999999 899999997
Q ss_pred cCCCCCCceEEEEeccCC--------------CCCCceEEEEecCCCCCCCCCeEEEEEEcCHHH--HHHHhcCCCCCCC
Q 010302 434 KSLRHDRPFTVSMANAGP--------------NTNGSQFFITTVATPWLDNKHTVFGRVIKGMDV--VQAIEKVKTDKND 497 (513)
Q Consensus 434 ~~~~~~~~g~v~~~~~~~--------------~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~--l~~i~~~~~~~~~ 497 (513)
+.++|.++|+||||+.++ ++++|||||+++++|+||++|+|||+|+ ||++ |++|+++++++++
T Consensus 100 ~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~ 178 (232)
T 3bkp_A 100 PRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKED 178 (232)
T ss_dssp TTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGG
T ss_pred cCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCC
Confidence 889999999999999987 6999999999999999999999999999 7765 8999999999999
Q ss_pred CcccCeEEEEEEEcc
Q 010302 498 KPYQDVKILNVTVPK 512 (513)
Q Consensus 498 ~p~~~i~I~~~~v~~ 512 (513)
+|+++|+|.+|+|+.
T Consensus 179 ~P~~~i~I~~~~vl~ 193 (232)
T 3bkp_A 179 RPMTPPFIKSVDVLW 193 (232)
T ss_dssp CBSSCCBEEEEEEEE
T ss_pred CcCCCeEEEEEEEEc
Confidence 999999999999874
No 28
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=316.83 Aligned_cols=156 Identities=45% Similarity=0.769 Sum_probs=145.0
Q ss_pred CCCCEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhhccc---cCCceEEEeEeCcEEEeccC-CCCCCCCcccCC
Q 010302 355 SLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWG 425 (513)
Q Consensus 355 ~~~~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~~~~---y~~~~~~rv~~~~~iq~G~~-~~~~~~~~~~~~ 425 (513)
.....|.|+++ .|+|+||||++.||+||+||++||++++ |+|+.||||+|+|||||||+ .+++.++.++|+
T Consensus 20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g 99 (184)
T 3rdd_A 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYG 99 (184)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCC
Confidence 45578889987 9999999999999999999999997655 99999999999999999995 677889999999
Q ss_pred CCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEE
Q 010302 426 REFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKI 505 (513)
Q Consensus 426 ~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I 505 (513)
..|++|. ..++|.++|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|+++++ ++++|.++|+|
T Consensus 100 ~~~~de~-~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~g~P~~~v~I 177 (184)
T 3rdd_A 100 EKFEDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITI 177 (184)
T ss_dssp SCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEEE
T ss_pred CcccCcc-cccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCC-CCCCCcCCeEE
Confidence 9999987 688999999999999999999999999999999999999999999999999999999987 46999999999
Q ss_pred EEEEEcc
Q 010302 506 LNVTVPK 512 (513)
Q Consensus 506 ~~~~v~~ 512 (513)
.+|++++
T Consensus 178 ~~cG~l~ 184 (184)
T 3rdd_A 178 ADCGQLE 184 (184)
T ss_dssp EEEEECC
T ss_pred EeCeEEC
Confidence 9999875
No 29
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.5e-44 Score=317.50 Aligned_cols=158 Identities=44% Similarity=0.721 Sum_probs=144.9
Q ss_pred cCCCCCEEEEE-----eCCeEEEEEeCCCCChHHHHHHHHhhh--ccc-cCCceEEEeEeCcEEEecc-CCCCCCCCccc
Q 010302 353 TTSLPDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSI 423 (513)
Q Consensus 353 ~~~~~~~v~~~-----t~~G~i~i~l~~~~~P~~~~~f~~l~~--~~~-y~~~~~~rv~~~~~iq~G~-~~~~~~~~~~~ 423 (513)
+......|.|+ |+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||+|||| +.+.+.++.++
T Consensus 23 ~~~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si 102 (193)
T 3k2c_A 23 AKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSI 102 (193)
T ss_dssp C--CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCT
T ss_pred cccCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCccc
Confidence 33444566666 789999999999999999999999999 667 9999999999999999999 46778899999
Q ss_pred CCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcc--c
Q 010302 424 WGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPY--Q 501 (513)
Q Consensus 424 ~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~--~ 501 (513)
|+..|++|. ..++|.++|+|+||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++ +++|. +
T Consensus 103 ~g~~f~dE~-~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~ 180 (193)
T 3k2c_A 103 YGEKFPDEN-FELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGY 180 (193)
T ss_dssp TSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTC
T ss_pred CCCcccccc-cccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCc
Confidence 999999995 7899999999999999999999999999999999999999999999999999999999997 58999 9
Q ss_pred CeEEEEEEEcc
Q 010302 502 DVKILNVTVPK 512 (513)
Q Consensus 502 ~i~I~~~~v~~ 512 (513)
+|+|.+|++++
T Consensus 181 ~v~I~~cG~l~ 191 (193)
T 3k2c_A 181 RIEIRDCGVLG 191 (193)
T ss_dssp CEEEEEEEECC
T ss_pred cEEEEEceEeC
Confidence 99999999986
No 30
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=1.2e-44 Score=314.47 Aligned_cols=154 Identities=36% Similarity=0.552 Sum_probs=139.8
Q ss_pred CCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCccccccC
Q 010302 356 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 435 (513)
Q Consensus 356 ~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 435 (513)
....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+.+. ...++.+|++|....
T Consensus 3 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--~~~~g~~~~dE~~~~ 80 (166)
T 1v9t_A 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNG 80 (166)
T ss_dssp CSCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCC--BCCCCCCBCCCGGGS
T ss_pred CCeEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCC--CCCCCCccccccccc
Confidence 356899999999999999999999999999999999999999999999999999999876532 234578899998667
Q ss_pred CCCCCceEEEEecc-CCCCCCceEEEEecCCCCCCCC-----CeEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeEE
Q 010302 436 LRHDRPFTVSMANA-GPNTNGSQFFITTVATPWLDNK-----HTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKI 505 (513)
Q Consensus 436 ~~~~~~g~v~~~~~-~~~~~~s~f~i~~~~~~~ld~~-----~~vfG~V~~G~~~l~~i~~~~~~~----~~~p~~~i~I 505 (513)
++| .+|+||||+. +|++++|||||++.++|+||++ |+|||+|++|||||++|+++++++ +++|.++|+|
T Consensus 81 l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I 159 (166)
T 1v9t_A 81 LRN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159 (166)
T ss_dssp CCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBE
T ss_pred ccC-CceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEE
Confidence 766 5699999997 5999999999999999999998 999999999999999999999986 4799999999
Q ss_pred EEEEEcc
Q 010302 506 LNVTVPK 512 (513)
Q Consensus 506 ~~~~v~~ 512 (513)
.+|+|++
T Consensus 160 ~~~~v~~ 166 (166)
T 1v9t_A 160 LSATVLP 166 (166)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999975
No 31
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=2.6e-44 Score=315.93 Aligned_cols=154 Identities=52% Similarity=0.860 Sum_probs=141.3
Q ss_pred CCCCEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhh--ccc--------cCCceEEEeEeCcEEEeccCC-CCCC
Q 010302 355 SLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCR--NEY--------YNNLIFHRVIKGFMIQTGDPL-GDGT 418 (513)
Q Consensus 355 ~~~~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~--~~~--------y~~~~~~rv~~~~~iq~G~~~-~~~~ 418 (513)
.....|.|+++ .|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+. +++.
T Consensus 17 ~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~ 96 (186)
T 2poy_A 17 QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGT 96 (186)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCC
Confidence 34456777755 9999999999999999999999996 578 999999999999999999984 6788
Q ss_pred CCcccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCC
Q 010302 419 GGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDK 498 (513)
Q Consensus 419 ~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~ 498 (513)
+++++|+..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++ ++++
T Consensus 97 gg~si~g~~f~dE~-~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~ 174 (186)
T 2poy_A 97 GGESIYGSKFRDEN-FVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGK 174 (186)
T ss_dssp CCCCTTC-CBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSC
T ss_pred CCCccCCCcccCcc-cccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCC
Confidence 99999999999997 689999999999999999999999999999999999999999999999999999999998 5689
Q ss_pred cccCeEEEEEEE
Q 010302 499 PYQDVKILNVTV 510 (513)
Q Consensus 499 p~~~i~I~~~~v 510 (513)
|.++|+|.+|+.
T Consensus 175 P~~~v~I~~cG~ 186 (186)
T 2poy_A 175 PTKSVCITASGV 186 (186)
T ss_dssp CSSCEEEEEEEC
T ss_pred CCCCEEEEeCCC
Confidence 999999999973
No 32
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=2e-44 Score=318.60 Aligned_cols=157 Identities=50% Similarity=0.790 Sum_probs=145.4
Q ss_pred CCCCEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhhc--c-ccCCceEEEeEeCcEEEeccCC-CCCCCCcccCC
Q 010302 355 SLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRN--E-YYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWG 425 (513)
Q Consensus 355 ~~~~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~~--~-~y~~~~~~rv~~~~~iq~G~~~-~~~~~~~~~~~ 425 (513)
....+|.|+++ .|+|+||||++.||+||+||++||++ | +|+|+.||||+|+|||||||+. +++.++.++|+
T Consensus 10 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g 89 (185)
T 4fru_A 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG 89 (185)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred CcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccC
Confidence 34456666655 99999999999999999999999976 5 7999999999999999999985 77889999999
Q ss_pred CCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEE
Q 010302 426 REFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKI 505 (513)
Q Consensus 426 ~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I 505 (513)
..|++|. ..++|.++|+||||+.+|++++|||||+++++|+||++|+|||||++|||||++|++++++.+++|+++|+|
T Consensus 90 ~~f~de~-~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I 168 (185)
T 4fru_A 90 ERFPDEN-FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTI 168 (185)
T ss_dssp SCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEE
T ss_pred CccCccc-cccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEE
Confidence 9999996 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcc
Q 010302 506 LNVTVPK 512 (513)
Q Consensus 506 ~~~~v~~ 512 (513)
.+|++++
T Consensus 169 ~~~g~l~ 175 (185)
T 4fru_A 169 ADCGKIE 175 (185)
T ss_dssp EEEEEEE
T ss_pred EEceEEe
Confidence 9998763
No 33
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=6.4e-45 Score=316.95 Aligned_cols=148 Identities=47% Similarity=0.779 Sum_probs=112.9
Q ss_pred EeCCeEEEEEeCCCCChHHHHHHHHhhh--ccc-cCCceEEEeEeCcEEEecc-CCCCCCCCcccCCCCCccccccCCCC
Q 010302 363 HTTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRH 438 (513)
Q Consensus 363 ~t~~G~i~i~l~~~~~P~~~~~f~~l~~--~~~-y~~~~~~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~~~~ 438 (513)
.|++|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||+|||| +.+++.|++++|+..|++|. ..++|
T Consensus 18 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~~~~h 96 (172)
T 2c3b_A 18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADEN-FSRKH 96 (172)
T ss_dssp CCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CHHH
T ss_pred ecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCcc-ccccc
Confidence 4889999999999999999999999999 678 9999999999999999999 78888999999999999994 78899
Q ss_pred CCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEc--CHHHHHHHhcCCCCCCC-CcccCeEEEEEEEc
Q 010302 439 DRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIK--GMDVVQAIEKVKTDKND-KPYQDVKILNVTVP 511 (513)
Q Consensus 439 ~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~--G~~~l~~i~~~~~~~~~-~p~~~i~I~~~~v~ 511 (513)
.++|+||||+.+|++++|||||+++++|+||++|+|||||++ |||||++|+++++++.+ +|.++|+|.+|+.+
T Consensus 97 ~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 97 DKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp HHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred CCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence 999999999999999999999999999999999999999999 99999999999998755 99999999999875
No 34
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=3.5e-43 Score=319.82 Aligned_cols=153 Identities=24% Similarity=0.387 Sum_probs=138.0
Q ss_pred CCEEEEE-----eCCeEEEEEeCCCCChHHHHHHHHhhhc-----------------c--c-cCCceEEEeEeCcEEEec
Q 010302 357 PDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCRN-----------------E--Y-YNNLIFHRVIKGFMIQTG 411 (513)
Q Consensus 357 ~~~v~~~-----t~~G~i~i~l~~~~~P~~~~~f~~l~~~-----------------~--~-y~~~~~~rv~~~~~iq~G 411 (513)
...|.|+ |+.|+|+||||++.||+||+||++||++ | | |+|+.||||+|+||||||
T Consensus 14 ~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgG 93 (234)
T 2ose_A 14 NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSG 93 (234)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEEC
T ss_pred CCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcC
Confidence 4466666 9999999999999999999999999994 4 7 999999999999999999
Q ss_pred c-CCCCCCCCcccCCCC-----CccccccCCCCCCceEEEEec----cCCCCCCceEEEEecC------CCCCCCCCeEE
Q 010302 412 D-PLGDGTGGQSIWGRE-----FEDEFHKSLRHDRPFTVSMAN----AGPNTNGSQFFITTVA------TPWLDNKHTVF 475 (513)
Q Consensus 412 ~-~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~~g~v~~~~----~~~~~~~s~f~i~~~~------~~~ld~~~~vf 475 (513)
| +.+++.|++++||.. |+ + ..++|.++|+||||+ .+|++++|||||++++ +|+||++|+||
T Consensus 94 d~~~g~G~Gg~siyg~~~~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF 170 (234)
T 2ose_A 94 DIYNSNGSSAGTVYCDEPIPPVFG-D--YFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI 170 (234)
T ss_dssp CCC----CCCCCTTTTCCBCCCCC-S--CCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred CccCCCCCCCccccCCccCccccc-C--cCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence 9 578889999999887 65 3 478999999999999 8999999999999999 99999999999
Q ss_pred EEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcc
Q 010302 476 GRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 512 (513)
Q Consensus 476 G~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~ 512 (513)
|+|++|||||++|++++++.+++|.++|+|.+|+++.
T Consensus 171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~ 207 (234)
T 2ose_A 171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYL 207 (234)
T ss_dssp EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence 9999999999999999999889999999999999875
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=7.9e-40 Score=327.26 Aligned_cols=154 Identities=48% Similarity=0.745 Sum_probs=146.5
Q ss_pred CCEEEEEeC-----CeEEEEEeCCCCChHHHHHHHHhhhc--------c---ccCCceEEEeEeCcEEEeccCC-CCCCC
Q 010302 357 PDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRN--------E---YYNNLIFHRVIKGFMIQTGDPL-GDGTG 419 (513)
Q Consensus 357 ~~~v~~~t~-----~G~i~i~l~~~~~P~~~~~f~~l~~~--------~---~y~~~~~~rv~~~~~iq~G~~~-~~~~~ 419 (513)
...|.|+|+ .|+|+|+||++.||+||+||+.||++ | ||+|+.||||+|+|||||||+. ++|+|
T Consensus 15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g 94 (370)
T 1ihg_A 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG 94 (370)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence 678999987 89999999999999999999999998 6 7999999999999999999997 78999
Q ss_pred CcccCCCCCccccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 010302 420 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKP 499 (513)
Q Consensus 420 ~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~p 499 (513)
++++||..|++|. ..++|+++|+|+|++.+|+++||||||+++++|+||++|+|||+|++||+||++|++++++. ++|
T Consensus 95 ~~~~~~~~~~~e~-~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P 172 (370)
T 1ihg_A 95 GESIYGEKFEDEN-FHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP 172 (370)
T ss_dssp CCBTTBSCBCCCC-CCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred CCCCCCCCcCCCc-CCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Ccc
Confidence 9999999999997 68899999999999999999999999999999999999999999999999999999999977 999
Q ss_pred ccCeEEEEEEEcc
Q 010302 500 YQDVKILNVTVPK 512 (513)
Q Consensus 500 ~~~i~I~~~~v~~ 512 (513)
..+|+|.+|+++.
T Consensus 173 ~~~v~I~~~g~l~ 185 (370)
T 1ihg_A 173 AKLCVIAECGELK 185 (370)
T ss_dssp SSCEEEEEEEEEC
T ss_pred ceeEEEEEEEEec
Confidence 9999999998873
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=4e-37 Score=294.84 Aligned_cols=147 Identities=23% Similarity=0.332 Sum_probs=128.1
Q ss_pred CCCCEEEEEeC--------CeEEEEEeCCCCChHHHHHHHHhhhccccCCceEEEeEeCcEEEeccCCCCCCC-------
Q 010302 355 SLPDNVILHTT--------MGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG------- 419 (513)
Q Consensus 355 ~~~~~v~~~t~--------~G~i~i~l~~~~~P~~~~~f~~l~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~------- 419 (513)
.....|.|+|+ .|+|+|+||++.||+||+||++||+.+||+|+.|||| ++|||||||+.+++.|
T Consensus 168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g 246 (369)
T 3rfy_A 168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE 246 (369)
T ss_dssp CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCC
T ss_pred CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccC
Confidence 45568889987 9999999999999999999999999999999999999 9999999999877665
Q ss_pred --------------CcccCCCCCcccc----ccCCCCCCceEEEEecc--CCCCCCceEEEEe-------cCCCCCCCCC
Q 010302 420 --------------GQSIWGREFEDEF----HKSLRHDRPFTVSMANA--GPNTNGSQFFITT-------VATPWLDNKH 472 (513)
Q Consensus 420 --------------~~~~~~~~~~~e~----~~~~~~~~~g~v~~~~~--~~~~~~s~f~i~~-------~~~~~ld~~~ 472 (513)
+.++|+..|++|. .+.++|+.+|+||||+. +||+++|||||++ ++.++||++|
T Consensus 247 ~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgky 326 (369)
T 3rfy_A 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRY 326 (369)
T ss_dssp CCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCE
T ss_pred cCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCe
Confidence 3566777777762 35788999999999998 8999999999999 4689999999
Q ss_pred eEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEccC
Q 010302 473 TVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPKS 513 (513)
Q Consensus 473 ~vfG~V~~G~~~l~~i~~~~~~~~~~p~~~i~I~~~~v~~~ 513 (513)
+|||+|++|||||++|++.. +|.++.|..|
T Consensus 327 tVFG~VveGmdVVdkI~~GD-----------~I~sv~I~~g 356 (369)
T 3rfy_A 327 AVFGYVTDNEDFLADLKVGD-----------VIESIQVVSG 356 (369)
T ss_dssp EEEEEEEESTTGGGGCCTTC-----------EEEEEEEEEC
T ss_pred eEEEEEecCHHHHHHHhCCC-----------ceEEEEEecC
Confidence 99999999999999998731 3667766543
No 37
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-33 Score=284.03 Aligned_cols=268 Identities=14% Similarity=0.144 Sum_probs=218.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|++++||+|+.|++|+|||+.+++....+. .|...+..+.|++++. ++++++.|++|++||+. +.+++..
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd~~--~~~~~~~ 187 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGK--LLASCSADMTIKLWDFQ--GFECIRT 187 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSS--EEEEEETTSCCCEEETT--SSCEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCC--CCceeEE
Confidence 4799999999999999999999999988876654 8899999999999988 99999999999999997 7888999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|.+++|+|++++|++++.|++|++||+++ +.++..+.+|...|.+++|+|++++|++++
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~--------------~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--------------GYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------------CcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 999999999999999999999999999999999987 445677888999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccc-------------------cccccccceeeeee--------e
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR-------------------LEAIDFGRRMAVEK--------E 213 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~-------------------l~~~~~~~r~~~e~--------e 213 (513)
.|++|++||++++++...+.+|...+.++.+++...+. +-....+..+.+.. .
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~ 333 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 99999999999999999998888777777776643221 11111111121111 1
Q ss_pred ccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccccccc
Q 010302 214 IEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 292 (513)
Q Consensus 214 ~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
+. .....+..++|+++|++|++++.++ |++||+.+++++..+..|...+. .+.+
T Consensus 334 ~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~-----------------~l~~------- 388 (410)
T 1vyh_C 334 LV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT-----------------SLDF------- 388 (410)
T ss_dssp EE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE-----------------EEEE-------
T ss_pred EE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE-----------------EEEE-------
Confidence 11 1223567889999999999998876 99999999999888876653222 2222
Q ss_pred CCCCCCCCeEEEeeecCceEEEEec
Q 010302 293 SKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 293 ~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
.++..+++||+.|+.|.+|..
T Consensus 389 ----~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 389 ----HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----CSSSSCEEEEETTSEEEEEC-
T ss_pred ----cCCCCEEEEEeCCCcEEEEeC
Confidence 266678999999999999964
No 38
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=268.83 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=219.4
Q ss_pred CeEecC----CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVD----GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~d----g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
|+|+|+ +++||||+.|++|+|||+.+.+......+.+|...+.++.+++++. ++++++.|++|++||+. +++
T Consensus 38 v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i~lWd~~--~~~ 113 (321)
T 3ow8_A 38 VAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHIRLWDLE--NGK 113 (321)
T ss_dssp EEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETT--TTE
T ss_pred EEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcEEEEECC--CCC
Confidence 467764 6799999999999999998877666667789999999999999988 99999999999999998 888
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
.+..+..|...+.+++|+|++++|++++.|+.|++||+++ +.....+..|...+.+++|+|++++|
T Consensus 114 ~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~--------------~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES--------------GKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT--------------CSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC--------------CceeEEecCCCceEEEEEECCCCCEE
Confidence 8999999999999999999999999999999999999977 34456667788899999999999999
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee--------eccccCCCCCCceEEc
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK--------EIEKTETAPPSNAIFD 228 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~--------e~~~~~~~~~~~i~fd 228 (513)
++++.|+.|++||+++++++.++.+|...+.++.++++..+.+.....+ .+.+.. .+. .....+..++|+
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg-~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s 257 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG-YIKIYDVQHANLAGTLS-GHASWVLNVAFC 257 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS-CEEEEETTTCCEEEEEC-CCSSCEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC-eEEEEECCCcceeEEEc-CCCCceEEEEEC
Confidence 9999999999999999999999999988888888888755444333222 222211 111 123356789999
Q ss_pred CCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeee
Q 010302 229 ESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF 307 (513)
Q Consensus 229 ~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~ 307 (513)
|+|++|++++.++ |++||+.++++++.+..+...+. .+.+ .+|+..+++++
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~-----------------~v~~-----------s~~g~~l~s~~ 309 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW-----------------GVKY-----------NGNGSKIVSVG 309 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-----------------EEEE-----------CTTSSEEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE-----------------EEEE-----------CCCCCEEEEEe
Confidence 9999999998776 99999999999998866553222 1222 26777899999
Q ss_pred cCceEEEEec
Q 010302 308 KRHRIYLFSR 317 (513)
Q Consensus 308 ~~~~i~i~~~ 317 (513)
.|+.|++|..
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999964
No 39
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.9e-32 Score=265.65 Aligned_cols=238 Identities=11% Similarity=0.109 Sum_probs=195.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|||+|++||+++.|++|++||+.+++.+..+. .|...+..+.|+++++ ++++++.|++|++||+. +++++..
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd~~--~~~~~~~ 92 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKN--WIIVGSDDFRIRVFNYN--TGEKVVD 92 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEGGGT--EEEEEETTSEEEEEETT--TCCEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--ccCCcEEEEEEeCCCC--EEEEECCCCEEEEEECC--CCcEEEE
Confidence 5799999999999999999999999988776655 6788899999999988 89999999999999998 8889999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s~ 159 (513)
+.+|...|.+++|+|++++|++++.|++|++||+++.. .....+.+|...|.+++|+| ++..|+++
T Consensus 93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-------------~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------------EEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------------chhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 99999999999999999999999999999999986521 23455678999999999999 67899999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC--CCCEEEEc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--SSNFLIYA 237 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~--~g~~li~~ 237 (513)
+.|++|++||+++++....+..+ .......+.|.+ ++++|+++
T Consensus 160 s~D~~v~iwd~~~~~~~~~~~~~-----------------------------------~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTLTTG-----------------------------------QERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEEECC-----------------------------------CTTCEEEEEECCSTTCCEEEEE
T ss_pred eCCCeEEEEECCCCCccceeccC-----------------------------------CcCcEEEEEEEEcCCCCEEEEE
Confidence 99999999999876654333210 011223456654 77899999
Q ss_pred cccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 238 TLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 238 s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
+.++ |++||+.+++++..+.+|...+..+.+ .++..+++||+.|+.|++|.
T Consensus 205 s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~----------------------------~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF----------------------------HPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----------------------------CSSSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEeCCCCccceeeCCCCCCEEEEEE----------------------------CCCCCEEEEEcCCCeEEEEE
Confidence 8776 999999999999998766533322221 25666899999999999998
Q ss_pred cCCC
Q 010302 317 RREP 320 (513)
Q Consensus 317 ~~~~ 320 (513)
.++.
T Consensus 257 ~~~~ 260 (304)
T 2ynn_A 257 SSTY 260 (304)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6653
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.6e-32 Score=267.45 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=216.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC--cce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN--EPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~--~~i 78 (513)
++|+|||++||+++.|++|+|||+.+++....+. .|...+..+.|+|++. ++++++.|+.|++|++..... ...
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGN--YVACGGLDNICSIYNLKTREGNVRVS 136 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSSCEEEEEECTTSS--EEEEEETTCEEEEEETTTCSBSCEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceEee--cCCccEEEEEECCCCC--EEEEEeCCCeEEEEECccCCCcceeE
Confidence 4799999999999999999999999888776655 6788899999999988 899999999999999973221 345
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
..+.+|...|.++.|++++. +++++.|++|++||+++ +..+..+.+|...|.+++|+|++++|++
T Consensus 137 ~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET--------------GQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC--------------CcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 66779999999999998875 88999999999999977 4456777889999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----e---cccc-CCCCCCceEEcC
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----E---IEKT-ETAPPSNAIFDE 229 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e---~~~~-~~~~~~~i~fd~ 229 (513)
++.|++|++||+++++++.++.+|...+.++.++++..+.+.....+ .+.+.. . +... ....+..++|+|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA-TCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC-cEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 99999999999999999999999988888888887654443333222 222211 1 1111 122467889999
Q ss_pred CCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeec
Q 010302 230 SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFK 308 (513)
Q Consensus 230 ~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~ 308 (513)
+|++|++++.++ |++||+.+++.+..+.+|...+..+.+ .+|+.+++||+.
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~----------------------------s~dg~~l~s~s~ 332 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV----------------------------TDDGMAVATGSW 332 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE----------------------------CTTSSCEEEEET
T ss_pred CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEE----------------------------cCCCCEEEEEcC
Confidence 999999998776 999999999998888766633322222 277888999999
Q ss_pred CceEEEEe
Q 010302 309 RHRIYLFS 316 (513)
Q Consensus 309 ~~~i~i~~ 316 (513)
|+.|+||.
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999994
No 41
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-32 Score=268.31 Aligned_cols=289 Identities=12% Similarity=0.078 Sum_probs=206.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEE-EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMI-RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~-~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|||+|++||+|+.|++|+|||+.++...... ...+|...+..++|+|++. ++++++.|+++++||+.....+++.
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIWKKNQDDFECVT 99 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECCC-EEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEEEccCCCeEEEE
Confidence 589999999999999999999999887654433 3367889999999999988 9999999999999999743445678
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+.+|...|.+++|+|++++|++++.|++|++||+++... ...+..+..|...|.+++|+|++++|+++
T Consensus 100 ~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-----------YECVSVLNSHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-----------EEEEEEECCCCSCEEEEEECSSSSCEEEE
T ss_pred EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-----------eEEEEEecCcCCCeEEEEECCCCCEEEEE
Confidence 8889999999999999999999999999999999876331 23355667899999999999999999999
Q ss_pred eCCCcEEEEEcCCCe--EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeec-----------------------
Q 010302 160 SPDRRIRVFWFRTGK--LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEI----------------------- 214 (513)
Q Consensus 160 s~D~~I~iwd~~tg~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~----------------------- 214 (513)
+.|++|++||.++++ +..++.+|...+.++.++++..+.+.... ++.+.+.+..
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~-D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD-DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC-CCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 999999999999886 45677777777777777766443332222 2222222210
Q ss_pred cccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccC
Q 010302 215 EKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANES 293 (513)
Q Consensus 215 ~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (513)
.......+..++|++++..|++++.++ |++|+..++.... . ....+.....++ +......+
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-----~-~~~~~~~~~~~~------------h~~~V~~v 309 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-----Q-PTFSLTAHLHQA------------HSQDVNCV 309 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-----S-CCEEEEEEETTS------------SSSCEEEE
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-----e-eeEEEEeeeccc------------ccCcEeEe
Confidence 000122345677888888777776554 7888876542100 0 000000000111 11113334
Q ss_pred CCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 294 KEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 294 ~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
.|++.++.+++||+.|++|++|..+.+.
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 4555666799999999999999876543
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.6e-31 Score=258.41 Aligned_cols=241 Identities=20% Similarity=0.244 Sum_probs=202.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++||+++.|+.|++|++.+++....+ ..|...+..+.|+|+++ ++++++.|+.|++||++ +++++..
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd~~--~~~~~~~ 102 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSN--LLVSASDDKTLKIWDVS--SGKCLKT 102 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TCCEEEE
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhh--ccCCCceEEEEEcCCCC--EEEEECCCCEEEEEECC--CCcEEEE
Confidence 579999999999999999999999988876654 47889999999999988 89999999999999998 8889999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|.+++|+|++++|++++.|+.|++||+++ ++.+..+..|...|.+++|+|++++|++++
T Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--------------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------CEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 999999999999999999999999999999999977 344667778999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|+.|++||+++++.+..+.. ........++|+++|++|++++.+
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLID-----------------------------------DDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECC-----------------------------------SSCCCEEEEEECTTSSEEEEEETT
T ss_pred CCCcEEEEECCCCceeeEEec-----------------------------------cCCCceEEEEECCCCCEEEEEcCC
Confidence 999999999999988766532 011234568999999999999877
Q ss_pred c-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 241 G-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 241 g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+ |++||+.++++++.+..+...... ....+ ..+++.++++|+.|+.|++|+.++
T Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~------------------------~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 214 NTLKLWDYSKGKCLKTYTGHKNEKYC-IFANF------------------------SVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp TEEEEEETTTTEEEEEECSSCCSSSC-CCEEE------------------------ECSSSCEEEECCTTSCEEEEETTT
T ss_pred CeEEEEECCCCcEEEEEEecCCceEE-EEEEE------------------------EeCCCcEEEEECCCCEEEEEECCC
Confidence 6 999999999999888665521111 11111 135677899999999999998765
Q ss_pred CC
Q 010302 320 PE 321 (513)
Q Consensus 320 ~~ 321 (513)
..
T Consensus 269 ~~ 270 (312)
T 4ery_A 269 KE 270 (312)
T ss_dssp CC
T ss_pred ch
Confidence 44
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=265.46 Aligned_cols=235 Identities=11% Similarity=0.083 Sum_probs=188.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEE--cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIR--LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~--l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|+||+ .|++|+.||+|+|||+.+++...... +.+|...|.+++|+|+++ ++++++.|++|++||++ +++++
T Consensus 88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~--~~~~~ 162 (344)
T 4gqb_B 88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLA--QQVVL 162 (344)
T ss_dssp EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT--TTEEE
T ss_pred EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECC--CCcEE
Confidence 4799986 67799999999999999987655443 457889999999999998 99999999999999998 88999
Q ss_pred EEeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc--ccCCcceEEEEEcCC-CC
Q 010302 79 ISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI--LKSKTTVSAIEVSPD-GK 154 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~spd-g~ 154 (513)
..+.+|...|.+++|+|++ .+|++++.|++|++||+++.+ ....+ ..|...+.+++|+|+ ++
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--------------PASQIGCSAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--------------CEEECC----CCCEEEEEECSSCTT
T ss_pred EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc--------------eeeeeecceeeccceeeeecCCCCc
Confidence 9999999999999999987 478999999999999998743 23333 345667999999995 57
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC-CE
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS-NF 233 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g-~~ 233 (513)
+|++|+.|++|++||+++++++.++.+|. ..+..++|+|+| ++
T Consensus 229 ~l~sg~~dg~v~~wd~~~~~~~~~~~~h~------------------------------------~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKSTSCVLSSAVHS------------------------------------QCVTGLVFSPHSVPF 272 (344)
T ss_dssp EEEEEETTSEEEEEESCC--CCEEEECCS------------------------------------SCEEEEEECSSSSCC
T ss_pred ceEEeccCCcEEEEECCCCcEEEEEcCCC------------------------------------CCEEEEEEccCCCeE
Confidence 88999999999999999999888776533 234578999998 57
Q ss_pred EEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 234 LIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 234 li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
|++++.++ |+|||+.++++++..++.+ .++.+. |++.++.|++||+.|++|
T Consensus 273 lasgs~D~~i~vwd~~~~~~~~~~~H~~-~V~~v~---------------------------~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLSELFRSQAHRD-FVRDAT---------------------------WSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp EEEEETTSCEEEECTTCCEEEEECCCSS-CEEEEE---------------------------ECSSSTTEEEEEETTSCE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEcCCCC-CEEEEE---------------------------EeCCCCeEEEEEcCCCeE
Confidence 88888765 9999999999877654332 222211 224566799999999999
Q ss_pred EEEecC
Q 010302 313 YLFSRR 318 (513)
Q Consensus 313 ~i~~~~ 318 (513)
++|.-.
T Consensus 325 ~~w~v~ 330 (344)
T 4gqb_B 325 VHHVVP 330 (344)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999754
No 44
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8e-31 Score=261.22 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=194.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEE----------------------------------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIR---------------------------------------------- 34 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~---------------------------------------------- 34 (513)
|+|+|||++||||+.|++|++||..+++....+.
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~ 149 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS 149 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccccee
Confidence 5789999999999999999999987766544332
Q ss_pred cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC--CCCEEEEEcCCCcEEEe
Q 010302 35 LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYW 112 (513)
Q Consensus 35 l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp--~~~~l~s~s~dg~i~iw 112 (513)
+..|...+..+.|++++. .+++++.|++|++||++ +++++..+.+|...|.+++|+| ++++|++++.|++|++|
T Consensus 150 ~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVE--SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp EEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred eeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 113556678888888877 78899999999999998 8889999999999999999988 57899999999999999
Q ss_pred cCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcC
Q 010302 113 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 192 (513)
Q Consensus 113 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 192 (513)
|+++ ++.+..+..|...|.+++|+|++++|++++.|++|++||+++++.+..+..+.
T Consensus 226 d~~~--------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~--------- 282 (354)
T 2pbi_B 226 DMRS--------------GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES--------- 282 (354)
T ss_dssp ETTT--------------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT---------
T ss_pred ECCC--------------CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------
Confidence 9987 34566778899999999999999999999999999999999988776553210
Q ss_pred CCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccc
Q 010302 193 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALY 271 (513)
Q Consensus 193 ~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~ 271 (513)
.......+.|+++|++|++++.++ |++||+.+++.+..+.+|...+..+.
T Consensus 283 -------------------------~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~---- 333 (354)
T 2pbi_B 283 -------------------------IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR---- 333 (354)
T ss_dssp -------------------------CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE----
T ss_pred -------------------------cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEE----
Confidence 011235789999999999998775 99999999999888866653332222
Q ss_pred cCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 272 QGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
+ .+|+.+++||+.|+.|+||+
T Consensus 334 -------------~-----------spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 -------------V-----------SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------------E-----------CTTSSCEEEEETTSEEEEEC
T ss_pred -------------E-----------CCCCCEEEEEcCCCCEEecC
Confidence 2 27888999999999999994
No 45
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.98 E-value=3.9e-30 Score=252.43 Aligned_cols=240 Identities=18% Similarity=0.219 Sum_probs=199.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++|++|+.|++|++||+.+++....+. .|...+..+.|++++. ++++++.|++|++||++ ++++..
T Consensus 71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~---~~~~~~ 143 (319)
T 3frx_A 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK---GQCLAT 143 (319)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT---SCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC---CCeEEE
Confidence 4799999999999999999999999998776655 8899999999999988 99999999999999994 567888
Q ss_pred eecCCCCeEEEEEcCC------CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 81 KKVHMGPVKVMRYNPV------FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
+.+|...|.++.|+|. +..+++++.|++|++||+++. +....+.+|...|.+++|+|+|+
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--------------~~~~~~~~h~~~v~~~~~sp~g~ 209 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF--------------QIEADFIGHNSNINTLTASPDGT 209 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT--------------EEEEEECCCCSCEEEEEECTTSS
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc--------------hhheeecCCCCcEEEEEEcCCCC
Confidence 8899999999999985 448999999999999999773 34566778999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
+|++++.|++|++||+.+++++..+..+ ..+..++|+|+|++|
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-------------------------------------DEVFSLAFSPNRYWL 252 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECC-------------------------------------SCEEEEEECSSSSEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC-------------------------------------CcEEEEEEcCCCCEE
Confidence 9999999999999999999988776431 134578999999999
Q ss_pred EEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 235 IYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 235 i~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
+.++..++++|++.++..+..+..+... +. ......+..+.+ .+|+.++++|+.|+.|++
T Consensus 253 a~~~~~~i~v~~~~~~~~~~~~~~~~~~--------~~-~~~~~~v~~~~~-----------spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 253 AAATATGIKVFSLDPQYLVDDLRPEFAG--------YS-KAAEPHAVSLAW-----------SADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp EEEETTEEEEEEETTEEEEEEECCCCTT--------CC-GGGCCCEEEEEE-----------CTTSSEEEEEETTSCEEE
T ss_pred EEEcCCCcEEEEeCcCeeeeccCccccc--------cc-cCcCcceeEEEE-----------CCCCCEEEEeecCceEEE
Confidence 9999999999999998888776432200 00 001112233333 378899999999999999
Q ss_pred EecC
Q 010302 315 FSRR 318 (513)
Q Consensus 315 ~~~~ 318 (513)
|.-.
T Consensus 313 Wd~~ 316 (319)
T 3frx_A 313 WQVM 316 (319)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9743
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.98 E-value=1.9e-30 Score=261.09 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=189.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc----------------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK---------------------------- 52 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~---------------------------- 52 (513)
|+|+|+|++||||+.|++|+|||+.+++....+. .|...+..++|+|++.
T Consensus 72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~ 149 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149 (380)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence 5799999999999999999999999887766554 3444444444444332
Q ss_pred --------------------ceEEEEeCCCCeEEEEecCCCCCcceEEe-----ecCCCCeEEEEEcC-CCCEEEEEcCC
Q 010302 53 --------------------AGLAISDRNSSFVHIYDARADSNEPLISK-----KVHMGPVKVMRYNP-VFDTVISADDK 106 (513)
Q Consensus 53 --------------------~~~l~s~~~d~~I~iwd~~~~~~~~i~~~-----~~h~~~V~~l~~sp-~~~~l~s~s~d 106 (513)
...+++++.|++|++||+. +++.+..+ .+|...|.+++|+| ++++|++|+.|
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT--TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT--TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC--CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence 1146777888888888887 66677666 57899999999987 88999999999
Q ss_pred CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHH
Q 010302 107 GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVA 186 (513)
Q Consensus 107 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i 186 (513)
++|++||++.. ...+..+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+..+...
T Consensus 228 ~~v~~wd~~~~-------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~- 293 (380)
T 3iz6_a 228 TTVRLWDLRIT-------------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR- 293 (380)
T ss_dssp SCEEEEETTTT-------------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS-
T ss_pred CeEEEEECCCC-------------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc-
Confidence 99999999742 2446677889999999999999999999999999999999999998877542100
Q ss_pred HHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCC----CCc
Q 010302 187 QDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK----VEN 261 (513)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~----~~~ 261 (513)
.......+..++|+++|++|+.++.++ |++||..+++.+..++. |++
T Consensus 294 ----------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 294 ----------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp ----------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred ----------------------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 001112357899999999999998776 99999999998887742 332
Q ss_pred cchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 262 NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 262 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
. +..+.+ .+|+.+++||+.|+.|+||.-.
T Consensus 346 ~-----------------v~~l~~-----------s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 346 R-----------------ISCLGL-----------SSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp C-----------------CCEEEE-----------CSSSSEEEEECTTSCEEEEECC
T ss_pred c-----------------eEEEEE-----------CCCCCEEEEeeCCCCEEEEecC
Confidence 1 122222 2788899999999999999754
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1e-29 Score=246.81 Aligned_cols=245 Identities=13% Similarity=0.117 Sum_probs=184.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|||+|++||+|+.|++|+|||+.+........+.+|...|..+.|++.....++++++.|++|++||++.+....+..
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 47999999999999999999999975432223345689999999999875222289999999999999997333356777
Q ss_pred eecCCCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC------
Q 010302 81 KKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD------ 152 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd------ 152 (513)
+..|...|.+++|+|+ +.+|++++.|++|++||+++... .....+..|...|.+++|+|+
T Consensus 95 ~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~------------~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 95 HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT------------TSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC------------BCCEEEECCSSCEEEEEECCCC-----
T ss_pred eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc------------eeeeeeecccCccceEeecCCcccccc
Confidence 8899999999999997 89999999999999999976321 113456679999999999997
Q ss_pred -------CCEEEEEeCCCcEEEEEcCCCe----EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCC
Q 010302 153 -------GKQFSITSPDRRIRVFWFRTGK----LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 221 (513)
Q Consensus 153 -------g~~l~s~s~D~~I~iwd~~tg~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~ 221 (513)
+++|++++.|++|++||+++++ +...+.+|. ..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~------------------------------------~~ 206 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS------------------------------------DW 206 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS------------------------------------SC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC------------------------------------Cc
Confidence 5799999999999999998765 344443322 23
Q ss_pred CCceEEcCCC---CEEEEccccc-eEEEEcccCc--E-EEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCC
Q 010302 222 PSNAIFDESS---NFLIYATLLG-IKIVNLHTNK--V-SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESK 294 (513)
Q Consensus 222 ~~~i~fd~~g---~~li~~s~~g-i~v~d~~t~~--~-v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (513)
+..++|+|++ ++|++++.++ |++||+.+++ . ...+.... ....+..+.+
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~--------- 262 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK---------------FPDVLWRASW--------- 262 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC---------------CSSCEEEEEE---------
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc---------------CCCcEEEEEE---------
Confidence 4678999985 8899988775 9999997643 1 11221000 0111223333
Q ss_pred CCCCCCeEEEeeecCceEEEEecCC
Q 010302 295 EPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 295 ~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+|+.++++|+.|++|++|....
T Consensus 263 --s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 263 --SLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp --CSSSCCEEEEETTSCEEEEEECT
T ss_pred --CCCCCEEEEEcCCCcEEEEEECC
Confidence 26788899999999999997654
No 48
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=2.1e-29 Score=245.40 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=175.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-cceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~-~~i~ 79 (513)
++|+|++++|++|+.|++|++||+.+++.+..+. .|...+..++|+|++. ++++++.|++|++||++ ++ ....
T Consensus 61 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~--~~~~~~~ 134 (304)
T 2ynn_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWE--NNWALEQ 134 (304)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGG--GTTEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe--CCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECC--CCcchhh
Confidence 4699999999999999999999999988776655 8899999999999988 89999999999999997 44 4556
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcC--CCCE
Q 010302 80 SKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSP--DGKQ 155 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp--dg~~ 155 (513)
.+.+|...|.+++|+| ++.+|++++.|++|++||+++.. ....+ ..|...+..++|+| ++++
T Consensus 135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------------PNFTLTTGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS--------------CSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------------ccceeccCCcCcEEEEEEEEcCCCCE
Confidence 7889999999999999 67899999999999999997632 23333 34667899999987 7789
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
|++++.|++|++||+++++++.++.+|. ..+..++|+|++++|+
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~------------------------------------~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATLEGHM------------------------------------SNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCS------------------------------------SCEEEEEECSSSSEEE
T ss_pred EEEEcCCCeEEEEeCCCCccceeeCCCC------------------------------------CCEEEEEECCCCCEEE
Confidence 9999999999999999999998887543 1235688999999999
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCC
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
+++.++ |++||..++++++.+..+.
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSS
T ss_pred EEcCCCeEEEEECCCCceeeeccCCC
Confidence 998776 9999999999999986544
No 49
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=4.6e-30 Score=256.03 Aligned_cols=239 Identities=13% Similarity=0.122 Sum_probs=185.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEE--EEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLM--IRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~--~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|+|++++| +++.|++|+|||+.+++.... .....|...|.+++|+|+++ ++++++.|++|++||++ +++++
T Consensus 100 ~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~--~~~~~ 174 (357)
T 4g56_B 100 VAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLS--QKAVL 174 (357)
T ss_dssp EEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETT--TTEEE
T ss_pred EEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECC--CCcEE
Confidence 5799998755 578899999999988765432 33446888999999999998 89999999999999998 88999
Q ss_pred EEeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC-CCEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-GKQF 156 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l 156 (513)
..+.+|...|.+++|+|++. ++++++.|++|++||+++.+. .....+..|...+.+++|+|+ +++|
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~------------~~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP------------ATRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC------------BCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce------------eeeeeeccccccccchhhhhcccceE
Confidence 99999999999999999875 789999999999999987442 112234457788999999997 4688
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC-CEEE
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS-NFLI 235 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g-~~li 235 (513)
++|+.|+.|++||++++++++++..+. ..+..++|+|+| ++|+
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~~~~~~~------------------------------------~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQTSAVHS------------------------------------QNITGLAYSYHSSPFLA 286 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCEEECCCS------------------------------------SCEEEEEECSSSSCCEE
T ss_pred EEeecccceeEEECCCCcEeEEEeccc------------------------------------eeEEEEEEcCCCCCEEE
Confidence 999999999999999988777665422 234578999987 5788
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
+++.++ |+|||+.++++++.+++.. .++. +. |+|.|+.+|+||+.|++|++
T Consensus 287 sgs~D~~i~iwd~~~~~~~~~~~H~~-~V~~-----------------va----------fsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 287 SISEDCTVAVLDADFSEVFRDLSHRD-FVTG-----------------VA----------WSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp EEETTSCEEEECTTSCEEEEECCCSS-CEEE-----------------EE----------ECSSSTTEEEEEETTSCEEE
T ss_pred EEeCCCEEEEEECCCCcEeEECCCCC-CEEE-----------------EE----------EeCCCCCEEEEEcCCCeEEE
Confidence 887765 9999999999998886433 2221 11 22458889999999999999
Q ss_pred EecCCC
Q 010302 315 FSRREP 320 (513)
Q Consensus 315 ~~~~~~ 320 (513)
|.-..+
T Consensus 339 W~~~~~ 344 (357)
T 4g56_B 339 HHLPSE 344 (357)
T ss_dssp EECC--
T ss_pred EECCCC
Confidence 986543
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.9e-29 Score=253.62 Aligned_cols=258 Identities=13% Similarity=0.140 Sum_probs=189.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|||++||+|+.|++|++||+.+++....+ ..|...+..+.|+|++. .+++++.|++|++||++ ++++...
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~--~~~~~~~ 202 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLR--TGQCSLT 202 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TTEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--ccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECC--CCeeEEE
Confidence 479999999999999999999999988776654 48899999999999988 88999999999999998 7777776
Q ss_pred eecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
+. +...+.+++|+| ++++|++++.|+.|++||++++..... . ........+|...|.+++|+|+|++|+++
T Consensus 203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~-----~--~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-----L--DSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-----E--C------CCCSSCEEEEEECTTSSEEEEE
T ss_pred EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe-----e--cccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 65 567899999999 899999999999999999987442100 0 00111225688999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
+.|++|++||+++.......... . .+. ....+. .....+..++|++++++|++++.
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~----------~----------~~~---~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~ 330 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTP----------N----------SGT---CEVTYI-GHKDFVLSVATTQNDEYILSGSK 330 (393)
T ss_dssp ETTSEEEEEEC-----------------------------------C---EEEEEE-CCSSCEEEEEECGGGCEEEEEET
T ss_pred eCCCEEEEEECCCCCCcccccCC----------C----------CCc---ceEEEe-cccCcEEEEEECCCCCEEEEEeC
Confidence 99999999999875542211100 0 000 000011 11224567899999999999987
Q ss_pred cc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 240 LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 240 ~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
++ |++||..+++.+..+.+|...+..+.++ .+ ..+ .++..+|+||+.|+.|+||.-+
T Consensus 331 D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~--~~-------------------~~~-~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 331 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVA--NG-------------------SSL-GPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEC--SS-------------------CTT-CTTCEEEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCCeEEEEECCCCCCEEEEEec--CC-------------------cCc-CCCCCEEEEECCCCcEEECccc
Confidence 76 9999999999998887666333222211 10 011 3678899999999999999754
No 51
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=8.4e-30 Score=252.66 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=178.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC------------ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY------------DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIY 68 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~------------~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw 68 (513)
++|||||++|++++ |+++++||.... ...... .+...|..++|++++ .+++++.|++|+||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~d~---~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV---QTEAGVADLTWVGER---GILVASDSGAVELW 108 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE---EESSCEEEEEEETTT---EEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee---ccCCCEEEEEEeCCC---eEEEEECCCEEEEE
Confidence 47999999999888 778888874210 011111 134679999999985 46788899999999
Q ss_pred ecCCCCCcceEE----eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 69 DARADSNEPLIS----KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 69 d~~~~~~~~i~~----~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
|+. +++.+.. +.+|...|++++|+|++++|++++.|++|++||+++ ++.+..+.+|...|
T Consensus 109 d~~--~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--------------~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 109 ELD--ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--------------QVVLSSYRAHAAQV 172 (344)
T ss_dssp EEC--TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCE
T ss_pred ecc--CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--------------CcEEEEEcCcCCce
Confidence 997 5555443 348999999999999999999999999999999987 45678888999999
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCC
Q 010302 145 SAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 145 ~~v~~spdg~-~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
.+++|+|++. +|++++.|++|++||+++++....+..+. ......
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------------------------------~~~~~~ 218 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA----------------------------------PGYLPT 218 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------CCCEE
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecce----------------------------------eeccce
Confidence 9999999985 78999999999999999998877654211 012235
Q ss_pred ceEEcC-CCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCe
Q 010302 224 NAIFDE-SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT 301 (513)
Q Consensus 224 ~i~fd~-~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 301 (513)
+++|++ ++++|++++.++ |++||+.++++++.+.+|...+..+.++ +....
T Consensus 219 ~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fs---------------------------p~g~~ 271 (344)
T 4gqb_B 219 SLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS---------------------------PHSVP 271 (344)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEEC---------------------------SSSSC
T ss_pred eeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEc---------------------------cCCCe
Confidence 778988 456888887765 9999999999998886665333322221 22346
Q ss_pred EEEeeecCceEEEEecCC
Q 010302 302 LLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 302 l~~s~~~~~~i~i~~~~~ 319 (513)
+++||+.|+.|+||..+.
T Consensus 272 ~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp CEEEEETTSCEEEECTTC
T ss_pred EEEEEeCCCeEEEEECCC
Confidence 899999999999996554
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=5.2e-29 Score=246.89 Aligned_cols=280 Identities=17% Similarity=0.121 Sum_probs=207.0
Q ss_pred ec-CCCEEEEEeCCCcEEEEEccCCc-----eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 4 SV-DGLLCCSISNDKSVKIYDVVNYD-----MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 4 s~-dg~~las~s~D~~v~iwd~~~~~-----~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++ |+++||||+.|++|++||+.+.+ ......+..|...+..++|++++. ++++++.|++|++||++ +++.
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s~s~D~~v~lwd~~--~~~~ 110 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAISSSWDKTLRLWDLR--TGTT 110 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEEEETTSEEEEEETT--SSCE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEEEcCCCcEEEEECC--CCcE
Confidence 55 99999999999999999997543 223445668999999999999988 89999999999999998 7888
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC----
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG---- 153 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg---- 153 (513)
+..+.+|...|.+++|+|++++|++++.|++|++||+.... .........|...|.+++|+|++
T Consensus 111 ~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC------------KFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE------------EEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc------------eeeeecccCCCceeeeeeecccccccc
Confidence 99999999999999999999999999999999999986311 01112233688899999999987
Q ss_pred ------CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeee--c----c-ccCCC
Q 010302 154 ------KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE--I----E-KTETA 220 (513)
Q Consensus 154 ------~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e--~----~-~~~~~ 220 (513)
.+|++++.|++|++|| .+++....+.+|...+.++.++++..+.+.....+ .+.+..- . . .....
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg-~v~iwd~~~~~~~~~~~~~~~ 256 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK-KLLIWDILNLTYPQREFDAGS 256 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC-EEEEEESSCCSSCSEEEECSS
T ss_pred ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCC-eEEEEECCCCcccceeecCCC
Confidence 7999999999999999 56778888888887788888887755444333222 2222210 0 0 01223
Q ss_pred CCCceEEcCCCCEEEEccccceEEEEcccCcEEE--EeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCC
Q 010302 221 PPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSR--ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFS 298 (513)
Q Consensus 221 ~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~--~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (513)
.+..++|+|++++++.++..+|++||+.+++... .+.... .. ......+ ....+..+.+ .+
T Consensus 257 ~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~---~~~~~~~--~~~~v~~~~~-----------sp 319 (343)
T 2xzm_R 257 TINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP-IT---KAEGQKG--KNPQCTSLAW-----------NA 319 (343)
T ss_dssp CEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS-GG---GBTTBCC--SCCCEEEEEE-----------CS
T ss_pred cEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc-ch---hhhhhcC--CCCceEEEEE-----------CC
Confidence 4678999999999998888899999998876543 332111 00 0000011 1112333333 26
Q ss_pred CCeEEEeeecCceEEEEecC
Q 010302 299 DPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 299 d~~l~~s~~~~~~i~i~~~~ 318 (513)
++.++++|+.|+.|++|..+
T Consensus 320 ~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 320 LGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SSCCEEEEETTSEEEEEEEE
T ss_pred CCCeEEEecCCceEEEEEEE
Confidence 77789999999999999754
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-29 Score=245.43 Aligned_cols=277 Identities=12% Similarity=0.034 Sum_probs=192.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce--eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-----
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM--MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD----- 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~--~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~----- 73 (513)
++|+|+ +||+|+.|++|++||+.+++. ...+....|...+..++|+|++. ++++++.|++|++||+...
T Consensus 20 ~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 20 FDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS--LLAAGSFDSTVSIWAKEESADRTF 95 (330)
T ss_dssp EEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS--EEEEEETTSCEEEEEC-------C
T ss_pred eccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC--EEEEEeCCCcEEEEEcccCcCccc
Confidence 356776 999999999999999987543 33332234888999999999988 8999999999999998421
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
..+++..+.+|...|.+++|+|++++|++++.|++|++||++.... ..+.+..+..|...|.+++|+|++
T Consensus 96 ~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~----------~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE----------EYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC----------CCEEEEEECCCSSCEEEEEECSSS
T ss_pred cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC----------CeEEEEEeccCCCceEEEEECCCC
Confidence 2356677889999999999999999999999999999999954210 123456677899999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCC--eEEEEecccHHHHHHHhcCCCC-ccccccccccceeeeee----------------ec
Q 010302 154 KQFSITSPDRRIRVFWFRTG--KLRRVYDESLEVAQDLQRSDAP-LYRLEAIDFGRRMAVEK----------------EI 214 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~tg--~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~r~~~e~----------------e~ 214 (513)
++|++++.|++|++||..++ +++..+.+|...+.++.+++.. ...+-....+..+.+.. .+
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec
Confidence 99999999999999999887 6888999988877777777752 11122222222222211 11
Q ss_pred cccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCc--EEEEe-CCCCccchhheeccccCCcCCcceeeeecccccc
Q 010302 215 EKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNK--VSRIL-GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 290 (513)
Q Consensus 215 ~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~--~v~~~-g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
.......+..++|++++ +|++++.+ .|++||..+++ .+... ..|. ... +..+
T Consensus 246 ~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~-~~~---------------v~~v------- 301 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG-VYE---------------INVV------- 301 (330)
T ss_dssp CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT-TSC---------------EEEE-------
T ss_pred ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc-cce---------------EEEE-------
Confidence 11123456788999766 56666655 49999998774 23222 2222 001 1111
Q ss_pred ccCCCCCC-CCeEEEeeecCceEEEEecC
Q 010302 291 NESKEPFS-DPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 291 ~~~~~~~~-d~~l~~s~~~~~~i~i~~~~ 318 (513)
.|++. |+.+++||+.|+.|++|..+
T Consensus 302 ---~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 302 ---KWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp ---EEC-----CCEEEEETTSEEEEEEC-
T ss_pred ---EEecCCCceEEEEecCCCcEEEEEec
Confidence 12222 67889999999999999754
No 54
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=2.7e-28 Score=237.98 Aligned_cols=236 Identities=19% Similarity=0.242 Sum_probs=191.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++|++++.|++|++||+.+++.+..+. .|...+..+.|+|++. ++++++.|+.|++||++ +++.+..
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~--~~~~~~~ 144 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVK--TGKCLKT 144 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSS--EEEEEETTSCEEEEETT--TCCEEEE
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECC--CCEEEEE
Confidence 4799999999999999999999999988777655 7888999999999988 89999999999999998 7888999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcCCCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~s~ 159 (513)
+..|..+|.+++|+|++++|++++.|+.|++||+++.+ .+..+ ..+...+..++|+|++++|+++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------------eeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999997743 23333 3466779999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
+.|+.|++||+++++++..+.++... ..........+++++|++++.
T Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 211 TLDNTLKLWDYSKGKCLKTYTGHKNE---------------------------------KYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp ETTTEEEEEETTTTEEEEEECSSCCS---------------------------------SSCCCEEEECSSSCEEEECCT
T ss_pred cCCCeEEEEECCCCcEEEEEEecCCc---------------------------------eEEEEEEEEeCCCcEEEEECC
Confidence 99999999999999998887653210 001112233467889999987
Q ss_pred cc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeee--cCceEEEEe
Q 010302 240 LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF--KRHRIYLFS 316 (513)
Q Consensus 240 ~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~--~~~~i~i~~ 316 (513)
++ |++||+.+++++..+.+|...+. .++ . .++..++++++ +|+.|.+|.
T Consensus 258 dg~i~vwd~~~~~~~~~~~~h~~~v~--~~~---------------~-----------~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 258 DNLVYIWNLQTKEIVQKLQGHTDVVI--STA---------------C-----------HPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEE--EEE---------------E-----------CSSSSEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEECCCchhhhhhhccCCcEE--EEe---------------e-----------cCcCCceEEEEccCCccEEEec
Confidence 76 99999999999998876652221 111 1 25556667765 799999996
Q ss_pred c
Q 010302 317 R 317 (513)
Q Consensus 317 ~ 317 (513)
.
T Consensus 310 ~ 310 (312)
T 4ery_A 310 S 310 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=1.5e-28 Score=241.18 Aligned_cols=234 Identities=16% Similarity=0.140 Sum_probs=192.4
Q ss_pred CeEecCC-CEEEEEeCCCcEEEEEccCCce---eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDG-LLCCSISNDKSVKIYDVVNYDM---MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg-~~las~s~D~~v~iwd~~~~~~---~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
|+|+|++ ++|+||+.|++|++|++.+.+. .....+..|...+..+.|++++. ++++++.|++|++||+. +++
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~~wd~~--~~~ 98 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLRLWDVA--TGE 98 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TTE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEEEEECC--CCC
Confidence 4788865 8999999999999999864321 22344568999999999999998 99999999999999998 888
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC----
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD---- 152 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd---- 152 (513)
++..+.+|...|.+++|+|++.+|++++.|++|++||++. ..+..+.+|...|.+++|+|.
T Consensus 99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------------QCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---------------CEEEEECCCSSCEEEEEECCC----
T ss_pred eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------CeEEEEeccCCcEEEEEEccCCCCC
Confidence 9999999999999999999999999999999999999854 446677789999999999995
Q ss_pred --CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 153 --GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 153 --g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
+..|++++.|++|++||+++++....+.+|. ..+..++|+|+
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~------------------------------------~~v~~~~~sp~ 207 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN------------------------------------SNINTLTASPD 207 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCC------------------------------------SCEEEEEECTT
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCC------------------------------------CcEEEEEEcCC
Confidence 4589999999999999999998877665432 23457899999
Q ss_pred CCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 010302 231 SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 231 g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~ 309 (513)
|++|++++.++ |++||+.+++++..+..++ .+. . +.+ .+|+.+++++..+
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~--~---------------~~~-----------sp~~~~la~~~~~ 258 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF--S---------------LAF-----------SPNRYWLAAATAT 258 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEECCS-CEE--E---------------EEE-----------CSSSSEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCC-cEE--E---------------EEE-----------cCCCCEEEEEcCC
Confidence 99999998776 9999999999998886544 221 1 222 2667778877766
Q ss_pred ceEEEEecCC
Q 010302 310 HRIYLFSRRE 319 (513)
Q Consensus 310 ~~i~i~~~~~ 319 (513)
.+++|+-..
T Consensus 259 -~i~v~~~~~ 267 (319)
T 3frx_A 259 -GIKVFSLDP 267 (319)
T ss_dssp -EEEEEEETT
T ss_pred -CcEEEEeCc
Confidence 488887553
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=3e-28 Score=246.14 Aligned_cols=255 Identities=18% Similarity=0.236 Sum_probs=184.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC----------------CCCcEEEEEEcCCCcceEEEEeCCCCe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF----------------IPGAVEWVYKQGDVKAGLAISDRNSSF 64 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~----------------~~~~v~~v~~s~~~~~~~l~s~~~d~~ 64 (513)
++|||||++||+++ |+++++|++.+++.+..+.... +...+.+++|+|+++ ++++++.|++
T Consensus 70 v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~--~l~s~~~d~~ 146 (393)
T 1erj_A 70 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRL 146 (393)
T ss_dssp EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSC
T ss_pred EEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC--EEEEEcCCCe
Confidence 47999999999976 7899999999988766654211 112488999999998 8999999999
Q ss_pred EEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 65 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
|++||+. +++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++ ....+ .+...+
T Consensus 147 i~iwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--------------~~~~~-~~~~~v 209 (393)
T 1erj_A 147 IRIWDIE--NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--------------CSLTL-SIEDGV 209 (393)
T ss_dssp EEEEETT--TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------EEEEE-ECSSCE
T ss_pred EEEEECC--CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe--------------eEEEE-EcCCCc
Confidence 9999998 788889999999999999999999999999999999999997743 23333 355679
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCC
Q 010302 145 SAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 145 ~~v~~sp-dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
.+++|+| ++++|++++.|+.|++||+++++++..+...... .......+.
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-----------------------------~~~h~~~v~ 260 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES-----------------------------GTGHKDSVY 260 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------CCCSSCEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC-----------------------------CCCCCCCEE
Confidence 9999999 8999999999999999999999988776431100 001123456
Q ss_pred ceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeE
Q 010302 224 NAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTL 302 (513)
Q Consensus 224 ~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 302 (513)
.++|+++|++|++++.++ |++||+.+.+......... .. .....+.++. ..+..+.+ .++..+
T Consensus 261 ~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-~~--~~~~~~~~h~--~~v~~~~~-----------~~~~~~ 324 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN-SG--TCEVTYIGHK--DFVLSVAT-----------TQNDEY 324 (393)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC------------------CEEEEEECCS--SCEEEEEE-----------CGGGCE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC-CC--cceEEEeccc--CcEEEEEE-----------CCCCCE
Confidence 889999999999998776 9999998754332211100 00 0011111111 11222222 256778
Q ss_pred EEeeecCceEEEEecCCC
Q 010302 303 LCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 303 ~~s~~~~~~i~i~~~~~~ 320 (513)
++||+.|+.|++|..+..
T Consensus 325 l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 325 ILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEEETTSEEEEEETTTC
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 999999999999986654
No 57
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.6e-29 Score=247.59 Aligned_cols=244 Identities=16% Similarity=0.094 Sum_probs=184.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++||+|+.|++|+|||+.+++......+.+|...|..++|++.....++++++.|++|++||++.+..+.+..
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 57999999999999999999999988765445556689999999999864222289999999999999997333356677
Q ss_pred eecCCCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC------
Q 010302 81 KKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD------ 152 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd------ 152 (513)
+.+|...|.+++|+|+ +.+|++++.|++|++||++.... ......+..|...|.+++|+|+
T Consensus 99 ~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-----------WEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-----------EEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-----------cceeeeeccccCCcceEEEccccCCccc
Confidence 8899999999999997 78999999999999999866321 0113455678889999999998
Q ss_pred -----------CCEEEEEeCCCcEEEEEcCCC---eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccC
Q 010302 153 -----------GKQFSITSPDRRIRVFWFRTG---KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE 218 (513)
Q Consensus 153 -----------g~~l~s~s~D~~I~iwd~~tg---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~ 218 (513)
+++|++++.|++|++||++++ +++..+.+|.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~----------------------------------- 212 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS----------------------------------- 212 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS-----------------------------------
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC-----------------------------------
Confidence 478999999999999999765 3433333221
Q ss_pred CCCCCceEEcCCC----CEEEEccccc-eEEEEcccCc----EEEEeCCCCccchhheeccccCCcCCcceeeeeccccc
Q 010302 219 TAPPSNAIFDESS----NFLIYATLLG-IKIVNLHTNK----VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 289 (513)
Q Consensus 219 ~~~~~~i~fd~~g----~~li~~s~~g-i~v~d~~t~~----~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (513)
..+..++|+|++ ++|++++.++ |++||+.+.. ....+..++ ..+..+.+
T Consensus 213 -~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-----------------~~v~~v~~---- 270 (316)
T 3bg1_A 213 -DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN-----------------DVVWHVSW---- 270 (316)
T ss_dssp -SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS-----------------SCEEEEEE----
T ss_pred -CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC-----------------CcEEEEEE----
Confidence 234578899986 8899988776 9999987631 011111111 12223333
Q ss_pred cccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 290 ANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 290 ~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+++.++++|+.|+.|+||....
T Consensus 271 -------sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 271 -------SITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp -------CTTTCCEEEEESSSCEEEEEECT
T ss_pred -------cCCCCEEEEEcCCCeEEEEEECC
Confidence 26778899999999999997553
No 58
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=5e-28 Score=258.72 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=195.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC----CeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS----SFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d----~~I~iwd~~~~~~~ 76 (513)
++|||||++||+|+.|++|+|||+.+++......+..|.+.+..++|+|+++ .+++++.+ +.|++||. ++
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd~----~~ 138 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDT----GT 138 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTT----CC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEeeC----CC
Confidence 5799999999999999999999998666555555668889999999999998 55555443 46777874 35
Q ss_pred ceEEeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
.+..+.+|...|.+++|+|++. .|++++.|++|++||..+ .+.+..+.+|...|.+++|+|||++
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--------------~~~~~~l~~H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--------------FKFKSTFGEHTKFVHSVRYNPDGSL 204 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--------------BEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--------------CeEeeeeccccCceEEEEECCCCCE
Confidence 5667889999999999999986 699999999999999866 3446677889999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
|++++.|++|++||+.+++++..+.... .. .......+..++|+|+|++|+
T Consensus 205 las~s~D~~i~lwd~~~g~~~~~~~~~~-------------~~----------------~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGTKTGVFEDDS-------------LK----------------NVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECBCTT-------------SS----------------SCSSSSCEEEEEECTTSSEEE
T ss_pred EEEEECCCcEEEEECCCCcEeeeecccc-------------cc----------------ccccCCCEEEEEECCCCCEEE
Confidence 9999999999999999999887763100 00 001123456899999999999
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCCcc-chhheec----------------cccCCcCCcceeeeeccccccccCCCCC
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVENN-DRFLRIA----------------LYQGDRSSKKVRKIPAAAANANESKEPF 297 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~~~-~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (513)
+++.++ |++||+.+++++..+...... .....+. ++... .......+..+........+.
T Consensus 256 s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~-~~~~~~~~~gh~~~v~~l~~s- 333 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE-LGSIDQVRYGHNKAITALSSS- 333 (611)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT-TTEEEEEECCCSSCEEEEEEC-
T ss_pred EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC-CCCcceEEcCCCCCEEEEEEe-
Confidence 998776 999999999998877432100 0000000 00000 000011111111112223333
Q ss_pred CCCeEEEeeecCceEEEEecCCC
Q 010302 298 SDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 298 ~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
+|+..++||+.|++|++|..+..
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEEeCCCcEEEEECCCC
Confidence 68889999999999999986643
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=3.1e-28 Score=264.32 Aligned_cols=289 Identities=17% Similarity=0.109 Sum_probs=214.8
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCce---eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDM---MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~---~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
|+|+|+ +++|+|||.|++|++||+.+... .....+..|...+.+++|++++. ++++++.|++|++||+. +++
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v~vwd~~--~~~ 463 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGELRLWDLA--AGV 463 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TTE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcEEEEECC--CCc
Confidence 467776 48999999999999999976431 23334568999999999999988 99999999999999998 888
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC--C
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG--K 154 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg--~ 154 (513)
.+..+.+|...|.+++|+|++++|++++.|++|++||+..... ........+|...|.+++|+|++ .
T Consensus 464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-----------YTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----------EEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-----------eeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 8899999999999999999999999999999999999754210 01112234688899999999987 5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----ecc-ccCCCCCCceEEc
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EIE-KTETAPPSNAIFD 228 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~~-~~~~~~~~~i~fd 228 (513)
.|++++.|++|++||++++++...+.+|...+.++.++++..+.+.....+ .+.+.. .+. ......+..++|+
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg-~i~iwd~~~~~~~~~~~~~~~v~~~~~s 611 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG-VVLLWDLAEGKKLYSLEANSVIHALCFS 611 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS-BCEEEETTTTEEEECCBCSSCEEEEEEC
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCceEEEecCCCcEEEEEEc
Confidence 899999999999999999999999999988888888888755444333222 222211 111 1123456788999
Q ss_pred CCCCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccc---cCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 229 ESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALY---QGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 229 ~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
|++.+|+.++..+|++||+.+++++..+..+.. .+....... ........+..+. | .+|+.+++|
T Consensus 612 p~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~----------~-spdg~~l~s 679 (694)
T 3dm0_A 612 PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLK-AEAEKADNSGPAATKRKVIYCTSLN----------W-SADGSTLFS 679 (694)
T ss_dssp SSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-----------------CCCCEEEEE----------E-CTTSSEEEE
T ss_pred CCCcEEEEEcCCCEEEEECCCCCChhhhccccc-cccccccccccccCCceeEEeeeEE----------E-cCCCCEEEE
Confidence 999999999999999999999999988854331 110000000 0000000122222 3 378889999
Q ss_pred eecCceEEEEec
Q 010302 306 AFKRHRIYLFSR 317 (513)
Q Consensus 306 ~~~~~~i~i~~~ 317 (513)
|+.|+.|+||.-
T Consensus 680 gs~Dg~i~iW~i 691 (694)
T 3dm0_A 680 GYTDGVIRVWGI 691 (694)
T ss_dssp EETTSEEEEEEC
T ss_pred EcCCCeEEEEec
Confidence 999999999964
No 60
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=8.5e-28 Score=256.95 Aligned_cols=241 Identities=12% Similarity=0.079 Sum_probs=195.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|||||++||+++ +++|++|++.+++....+. +|...+..++|+|+++ ++++++.|++|+|||+..........
T Consensus 24 ~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~--~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 24 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC--CCSSCEEEEEECTTSS--EEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred EeeCCCCCEEEeCC-CCEEEEecCCCcccCeEec--CCCCceEEEEECCCCc--EEEEEeCCCCEEEeECCCCcceeeEe
Confidence 68999999999988 5699999998877766654 8899999999999998 99999999999999996333445567
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCC----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-E
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-Q 155 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~ 155 (513)
+.+|..+|.+++|+|++++|++++.+ +.|++||. +..+..+.+|...|.+++|+|++. .
T Consensus 99 ~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~----------------~~~~~~l~gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 99 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT----------------GTSNGNLTGQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT----------------CCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC----------------CCCcceecCCCCCceEEEECCCCCeE
Confidence 88999999999999999999988865 47889985 234566788999999999999987 6
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
|++++.|++|++||..+++++.++.+|. ..+.+++|+|+|++|+
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~------------------------------------~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHT------------------------------------KFVHSVRYNPDGSLFA 206 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCS------------------------------------SCEEEEEECTTSSEEE
T ss_pred EEEEeCCCeEEEEECCCCeEeeeecccc------------------------------------CceEEEEECCCCCEEE
Confidence 9999999999999999999888876543 2345789999999999
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
+++.++ |++||+.+++++..+.... .+ .......+..+.+ .+|+.+++||+.|+.|++
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~--~~--------~~~h~~~V~~v~~-----------spdg~~l~s~s~D~~v~l 265 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDS--LK--------NVAHSGSVFGLTW-----------SPDGTKIASASADKTIKI 265 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTT--SS--------SCSSSSCEEEEEE-----------CTTSSEEEEEETTSEEEE
T ss_pred EEECCCcEEEEECCCCcEeeeecccc--cc--------ccccCCCEEEEEE-----------CCCCCEEEEEeCCCeEEE
Confidence 998776 9999999999988873210 00 0001122333333 278889999999999999
Q ss_pred EecCC
Q 010302 315 FSRRE 319 (513)
Q Consensus 315 ~~~~~ 319 (513)
|.-++
T Consensus 266 Wd~~~ 270 (611)
T 1nr0_A 266 WNVAT 270 (611)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 98664
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=2.4e-27 Score=233.20 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=202.7
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCce---eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDM---MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~---~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
|+|+|+ +++|||||.|++|+|||+.+.+. .....+.+|...|..+.|++++. ++++++.|+.|++|+.. ...
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~~~~~~--~~~ 119 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLRLWDLT--TGT 119 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TTE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccceEEeec--ccc
Confidence 579997 68999999999999999986542 33445678999999999999998 89999999999999997 667
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCC-------------------------------Cccee
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP-------------------------------ESEVS 125 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------------~~~~~ 125 (513)
.......+...+..+.+++++++|++++.|+.+++||+...... ..+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 77777788889999999999999999999999999987543211 00223
Q ss_pred eeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccccc
Q 010302 126 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 205 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 205 (513)
|+.+..+.+..+..|...|.+++|+|++++|++++.|++|++||+++++.+..+..+
T Consensus 200 ~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~----------------------- 256 (340)
T 4aow_A 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG----------------------- 256 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-----------------------
T ss_pred EECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-----------------------
Confidence 555566677777889999999999999999999999999999999999988776431
Q ss_pred ceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeec
Q 010302 206 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 285 (513)
Q Consensus 206 ~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 285 (513)
..+..++|++++.+++.+....|++||+.++.++..+..... .....+ ....+..+.+
T Consensus 257 --------------~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~--h~~~v~~l~~ 314 (340)
T 4aow_A 257 --------------DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI------STSSKA--EPPQCTSLAW 314 (340)
T ss_dssp --------------SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------------C--CCCCEEEEEE
T ss_pred --------------ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccce------eeeccC--CCCCEEEEEE
Confidence 123577899999988888877899999999998888754320 001111 1222344444
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 286 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 286 ~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.+|+.+++||+.|+.|+||.-+
T Consensus 315 -----------s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 315 -----------SADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp -----------CTTSSEEEEEETTSCEEEEEEE
T ss_pred -----------CCCCCEEEEEeCCCEEEEEeCC
Confidence 2778889999999999999754
No 62
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=4.2e-28 Score=238.19 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=171.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++||+++.|++|++||+.+++....+. .+...+..++|+|+++ ++++++.|+.|++||++ +++++..
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~--~~~~~v~~~~~spdg~--~lasg~~dg~i~iwd~~--~~~~~~~ 201 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD--TRGKFILSIAYSPDGK--YLASGAIDGIINIFDIA--TGKLLHT 201 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE--CSSSCEEEEEECTTSS--EEEEEETTSCEEEEETT--TTEEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec--CCCceEEEEEECCCCC--EEEEEcCCCeEEEEECC--CCcEEEE
Confidence 4799999999999999999999999888766554 6777899999999998 89999999999999998 8889999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|..+|.+++|+|++++|++++.|++|++||+++ ...+..+.+|...|.+++|+|++++|++++
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH--------------ANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC--------------cceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 999999999999999999999999999999999977 344667788999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|++|++||+++++++.++.+|. ..+..++|+++|++|++++.+
T Consensus 268 ~D~~v~iwd~~~~~~~~~~~~h~------------------------------------~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 268 SDKSVKVWDVGTRTCVHTFFDHQ------------------------------------DQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCS------------------------------------SCEEEEEECTTSSEEEEEETT
T ss_pred CCCcEEEEeCCCCEEEEEEcCCC------------------------------------CcEEEEEECCCCCEEEEEeCC
Confidence 99999999999999998876532 234578999999999998877
Q ss_pred c-eEEEEc
Q 010302 241 G-IKIVNL 247 (513)
Q Consensus 241 g-i~v~d~ 247 (513)
+ |++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 6 999996
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=2e-28 Score=248.70 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=199.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++|++++.|++|++||+.+++....+. .+ ..+....+++++. ++++++.|+.|++||+. .++....
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~--~~~~~~~ 134 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--RA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSN--FNLQREI 134 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSC--SC-CEEEEEEECSSSC--EEEEEETTSCEEEECTT--SCEEEEE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEe--cC-CceEEEEEecCCC--EEEEEECCCCEEEEeCC--Ccceeee
Confidence 5799999999999999999999998765433222 22 3445556788887 89999999999999997 7777777
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|.+++|+|++++|++++.|+.|++||+++. +.+..+..|...|.+++|+|++++|++++
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--------------SNPRTLIGHRATVTDIAIIDRGRNVLSAS 200 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------------CCCEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------cCceEEcCCCCcEEEEEEcCCCCEEEEEc
Confidence 7899999999999999999999999999999999873 44667788999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccH------------------------HHHHHHhcCCCCccccccccccceeeee-----
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESL------------------------EVAQDLQRSDAPLYRLEAIDFGRRMAVE----- 211 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~------------------------~~i~~~~~~~~~~~~l~~~~~~~r~~~e----- 211 (513)
.|++|++||+++++.+..+..+. ..+..+.++++..+.+.....+. +.+.
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~ 279 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSK 279 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCC
Confidence 99999999999999999887532 22333444443322222222111 1111
Q ss_pred ---eeccccCCCCCCceEEcCCCC-EEEEccccc-eEEEEcccCcE-EEEeCC-CCccchhheeccccCCcCCcceeeee
Q 010302 212 ---KEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKV-SRILGK-VENNDRFLRIALYQGDRSSKKVRKIP 284 (513)
Q Consensus 212 ---~e~~~~~~~~~~~i~fd~~g~-~li~~s~~g-i~v~d~~t~~~-v~~~g~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 284 (513)
..+.......+..++|+++|+ +|++++.++ |++||+.+++. +..+.. +...+. .+.
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~--~~~--------------- 342 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN--NVY--------------- 342 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEE--EEE---------------
T ss_pred ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCce--EEE---------------
Confidence 111112234567889999998 888887765 99999988753 444432 221111 110
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 285 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 285 ~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
.+++.++++|+.|++|++|.-..+.
T Consensus 343 ------------~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 343 ------------FAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ------------EETTEEEEEETTTEEEEEEEECCTT
T ss_pred ------------eCCCCEEEEecCCccEEEEeccCCC
Confidence 1356689999999999999876643
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=4.4e-29 Score=248.96 Aligned_cols=239 Identities=14% Similarity=0.128 Sum_probs=176.9
Q ss_pred CeEecCCCEEEEEeC------CCcEEEEEccCCceeEEE--EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 1 MQVSVDGLLCCSISN------DKSVKIYDVVNYDMMLMI--RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~dg~~las~s~------D~~v~iwd~~~~~~~~~~--~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
|+|||||++||++|. |++|++|+..++.....+ ....|...|.+++|+|++. ++ +++.|++|+|||+.
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~--~l-~~s~dg~v~lWd~~- 123 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG--IL-VASDSGAVELWEIL- 123 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE--EE-EEETTSCEEEC----
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC--EE-EEECCCEEEEeecc-
Confidence 589999999999997 778999998765432111 1124677899999999875 44 55678999999997
Q ss_pred CCCcce----EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEE
Q 010302 73 DSNEPL----ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIE 148 (513)
Q Consensus 73 ~~~~~i----~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (513)
+++.. ....+|...|.+++|+|++++|++++.|++|++||+++ ++.+..+..|...|.+++
T Consensus 124 -~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 124 -EKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--------------KAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEE
T ss_pred -ccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--------------CcEEEEEcCCCCCEEEEE
Confidence 43322 23448999999999999999999999999999999977 455777888999999999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEE
Q 010302 149 VSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIF 227 (513)
Q Consensus 149 ~spdg~-~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~f 227 (513)
|+|++. ++++++.|++|++||+++++.+..+... .....+..++|
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~----------------------------------~~~~~v~~v~~ 234 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC----------------------------------ASDTIPTSVTW 234 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT----------------------------------TCCSCEEEEEE
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeeec----------------------------------cccccccchhh
Confidence 999885 7889999999999999988764433210 01123457899
Q ss_pred cCCC-CEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 228 DESS-NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 228 d~~g-~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
+|++ ++|++++.++ |++||+.++++++.+..+...+..+.++ +.+..+++|
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s---------------------------p~~~~~las 287 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS---------------------------YHSSPFLAS 287 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC---------------------------SSSSCCEEE
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc---------------------------CCCCCEEEE
Confidence 9874 6777777665 9999999999888886655333322221 344578999
Q ss_pred eecCceEEEEecCC
Q 010302 306 AFKRHRIYLFSRRE 319 (513)
Q Consensus 306 ~~~~~~i~i~~~~~ 319 (513)
|+.|+.|+||..+.
T Consensus 288 gs~D~~i~iwd~~~ 301 (357)
T 4g56_B 288 ISEDCTVAVLDADF 301 (357)
T ss_dssp EETTSCEEEECTTS
T ss_pred EeCCCEEEEEECCC
Confidence 99999999997554
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=1.3e-27 Score=234.59 Aligned_cols=268 Identities=12% Similarity=0.059 Sum_probs=202.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc---eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD---MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~---~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++|+|+|++|++++ |+.|++||+.+++ ....+....|...+..+.|+++++ ++++++.|+.|++||+.......
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~ 133 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRI 133 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EE
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcce
Confidence 47999999999999 9999999998765 334444446888999999999988 88899999999999998333336
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
...+..|...|.+++|+|+++++++++.|+.|++||+++ ++.+..+..|...+.+++|+|++++|+
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--------------QTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--------------CceeeeeecccCceEEEEECCCCCEEE
Confidence 677789999999999999999999999999999999977 344666777999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----ec-cccCCCCCCceEEcCCC
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EI-EKTETAPPSNAIFDESS 231 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~-~~~~~~~~~~i~fd~~g 231 (513)
+++.|+.|++||+++++.+..+.. ...+..+.++++..+.+.....+. +.+.. .. .......+..++|+++|
T Consensus 200 ~~~~dg~i~~~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQLQQHDF-TSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEECCCSSCEEEEEECTTS
T ss_pred EEecCCcEEEEECCCCceEeeecC-CCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeEEEcCCccceeEEEECCCC
Confidence 999999999999999998887653 233445555554333222221111 11110 00 11223456789999999
Q ss_pred CEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCc
Q 010302 232 NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH 310 (513)
Q Consensus 232 ~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~ 310 (513)
++|++++.++ |++||+.+++.+....... .+ ..+.+ .+|+.++++++.++
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v-----------------~~~~~-----------s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASIFQSKESS-SV-----------------LSCDI-----------SVDDKYIVTGSGDK 328 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSS-CE-----------------EEEEE-----------CTTSCEEEEEETTS
T ss_pred CEEEEecCCCcEEEEECCCCeEEEEecCCC-cE-----------------EEEEE-----------CCCCCEEEEecCCC
Confidence 9999988776 9999999998886654322 11 11222 26777899999999
Q ss_pred eEEEEe
Q 010302 311 RIYLFS 316 (513)
Q Consensus 311 ~i~i~~ 316 (513)
+|++|.
T Consensus 329 ~i~iw~ 334 (337)
T 1gxr_A 329 KATVYE 334 (337)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-27 Score=235.89 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=208.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++||+++.|+.|++||+.+++....+ ..|...+..+.|+++++ ++++++.|+.|++||+. +++.+..
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~--~~~~~~~ 111 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTGTIWSIDVDCFTK--YCVTGSADYSIKLWDVS--NGQCVAT 111 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETT--TCCEEEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh--hhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC--CCcEEEE
Confidence 579999999999999999999999998877665 47889999999999888 88999999999999998 7888888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCC-----CcEEEecCCCCCCCCcceeeeecCCccccccccCCc--ceEEEEEcCCC
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT--TVSAIEVSPDG 153 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~v~~spdg 153 (513)
+. |...|.+++|+|+++++++++.+ +.|++||+........ +..........+..|.. .+.+++|+|++
T Consensus 112 ~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 112 WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE---LTKVSEEPIHKIITHEGLDAATVAGWSTKG 187 (369)
T ss_dssp EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC---EEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee---ecccccceeeeccCCcCccceeEEEEcCCC
Confidence 87 88999999999999999999998 9999999876543221 11122334455556666 89999999999
Q ss_pred CEEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----ec-cccCCCCCCceE
Q 010302 154 KQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EI-EKTETAPPSNAI 226 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~-~~~~~~~~~~i~ 226 (513)
++|++++.|+.|++||+++ ++.+..+..+...+.++.++++..+.+.....+ .+.+.. .+ ..........++
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVDVSTLQVLKKYETDCPLNTAV 266 (369)
T ss_dssp CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEECCCCceeeeecCCCCceeEE
Confidence 9999999999999999999 788888887766666666666543333222211 111111 00 001233455677
Q ss_pred EcCCCCEEEEcccc---------------ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccc
Q 010302 227 FDESSNFLIYATLL---------------GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 291 (513)
Q Consensus 227 fd~~g~~li~~s~~---------------gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (513)
|+++++++++++.. .+++||..+++.+..+..+...+.. +.+
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~-----------------~~~------ 323 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT-----------------VAI------ 323 (369)
T ss_dssp ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE-----------------EEE------
T ss_pred ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE-----------------EEE------
Confidence 78888877776654 3677777777777666544422221 111
Q ss_pred cCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 292 ESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 292 ~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+|+.++++|+.|+.|++|.-+.
T Consensus 324 -----s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 324 -----SPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -----CTTSSEEEEEETTSEEEEEEECH
T ss_pred -----CCCCCEEEEEcCCCeEEEEECcc
Confidence 26778999999999999998664
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.8e-28 Score=243.06 Aligned_cols=285 Identities=9% Similarity=0.101 Sum_probs=212.8
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEc----cCCc------eeEEEEcC--------CCCCcEEEEEEcCCCcceEEEEeCC
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDV----VNYD------MMLMIRLP--------FIPGAVEWVYKQGDVKAGLAISDRN 61 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~----~~~~------~~~~~~l~--------~~~~~v~~v~~s~~~~~~~l~s~~~ 61 (513)
++|+|+|+ +||+++.|+.|++||+ .+++ ....+... .|...+.+++|++++. ++++++.
T Consensus 51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~ 128 (425)
T 1r5m_A 51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN--SIVTGVE 128 (425)
T ss_dssp EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS--EEEEEET
T ss_pred EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC--EEEEEeC
Confidence 57999999 9999999999999999 8777 33333321 1456899999999988 8999999
Q ss_pred CCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCC--------------------
Q 010302 62 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE-------------------- 121 (513)
Q Consensus 62 d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------- 121 (513)
|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 129 dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (425)
T 1r5m_A 129 NGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD 205 (425)
T ss_dssp TSCEEEEET---TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------
T ss_pred CCeEEEEeC---CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCC
Confidence 999999994 778889999999999999999999999999999999999987654311
Q ss_pred ----------------------cceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 122 ----------------------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 122 ----------------------~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
.+..|+...+..+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 285 (425)
T 1r5m_A 206 GSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF 285 (425)
T ss_dssp CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE
T ss_pred cceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe
Confidence 1233555556666677789999999999999999999999999999999999998888
Q ss_pred cccHHHHHHHhcCCCCccccccccccceeeeee-----ec--cccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCc
Q 010302 180 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EI--EKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 180 ~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~--~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~ 251 (513)
..+...+..+.+++.. +.+... ....+.+.. .+ .......+..++|+++|++|++++.++ |++||+.+++
T Consensus 286 ~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 286 YGHSQSIVSASWVGDD-KVISCS-MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CCCSSCEEEEEEETTT-EEEEEE-TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCCccEEEEEECCCC-EEEEEe-CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 8877777777777765 222222 122222211 00 112234667899999999999998775 9999999887
Q ss_pred --------------------EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCce
Q 010302 252 --------------------VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHR 311 (513)
Q Consensus 252 --------------------~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~ 311 (513)
++..+..+.. ...+..+.+ .+|..++++|+.++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~-----------s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 364 SKSRSLYGNRDGILNPLPIPLYASYQSSQD---------------NDYIFDLSW-----------NCAGNKISVAYSLQE 417 (425)
T ss_dssp C--------------CEECCEEEEECCTTC---------------CCCEEEEEE-----------CTTSSEEEEEESSSC
T ss_pred cceeeeecccccccCcccchhhhhhcCccc---------------CCceEEEEc-----------cCCCceEEEEecCce
Confidence 4444433321 002223323 267778899999999
Q ss_pred EEEEecC
Q 010302 312 IYLFSRR 318 (513)
Q Consensus 312 i~i~~~~ 318 (513)
|++|.-+
T Consensus 418 i~iw~~~ 424 (425)
T 1r5m_A 418 GSVVAIP 424 (425)
T ss_dssp CEEEECC
T ss_pred EEEEeec
Confidence 9999743
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=247.32 Aligned_cols=287 Identities=11% Similarity=0.071 Sum_probs=210.7
Q ss_pred CeEecCCC-EEEEE----------eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSVDGL-LCCSI----------SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~-~las~----------s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd 69 (513)
++|||+|+ +||++ +.|++|+|||+.+++....+....|...+.++.|++++. ++++++.|+.|++||
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~vw~ 95 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK--IIAGALDNGSLELYS 95 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS--CEEEEESSSCEEEEC
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC--eEEEEccCCeEEEee
Confidence 57999997 99999 899999999998875332222224778899999999988 889999999999999
Q ss_pred cCCC--CCcceEEeecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 70 ARAD--SNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 70 ~~~~--~~~~i~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
+... ..+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+++.+.....+ ....+..+..|...|.+
T Consensus 96 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 96 TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-----TPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp CSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-----CCBCCCCSCCSSCCCCE
T ss_pred cccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-----cccccccccCCCCCeeE
Confidence 9721 13578888899999999999998 8999999999999999998754100000 00112234568889999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEeccc------HHHHHHHhcCCCCc-ccccccccc--ceeeeee----
Q 010302 147 IEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDES------LEVAQDLQRSDAPL-YRLEAIDFG--RRMAVEK---- 212 (513)
Q Consensus 147 v~~spd-g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~------~~~i~~~~~~~~~~-~~l~~~~~~--~r~~~e~---- 212 (513)
++|+|+ +.+|++++.|+.|++||+++++.+..+..+ ...+.++.+++... +.+.....+ ..+.+..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999999 789999999999999999999999988876 45577777777632 222222211 0222211
Q ss_pred -----eccccCCCCCCceEEcC-CCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeec
Q 010302 213 -----EIEKTETAPPSNAIFDE-SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 285 (513)
Q Consensus 213 -----e~~~~~~~~~~~i~fd~-~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 285 (513)
.+.......+..++|+| ++++|++++.++ |++||+.+++.+..+..+...+..+.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~------------------ 312 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK------------------ 312 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE------------------
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE------------------
Confidence 11101234567889999 999999998765 99999999999988865553222111
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 286 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 286 ~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
|.+..+.++++++.|++|++|.-....
T Consensus 313 ---------~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 313 ---------FAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp ---------ECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred ---------ECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 223344899999999999999876543
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=1.6e-27 Score=239.38 Aligned_cols=268 Identities=9% Similarity=0.009 Sum_probs=198.3
Q ss_pred CeEecCC-CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDG-LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg-~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
++|+|+| ++||+|+.|++|+|||+.+++....+....|...+..+.|+| ++. ++++++.|+.|++||++ ...+
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~---~~~~ 153 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATTLRDFS---GSVI 153 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEEEEETT---SCEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEEEEECC---CCce
Confidence 4799999 999999999999999999988888877667999999999999 445 88999999999999996 3556
Q ss_pred EEeec---CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-
Q 010302 79 ISKKV---HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK- 154 (513)
Q Consensus 79 ~~~~~---h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~- 154 (513)
..+.. |...|.+++|+|++++|++++.|+.|++||++ +..+..+..|...|.+++|+|+++
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---------------~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD---------------GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT---------------SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC---------------CCEEEEeccCCCcEEEEEECCCCCC
Confidence 66654 44889999999999999999999999999983 245677788999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCC----CeEEEEecccHHHHHHHhcCC-CCccccccccccceeeeee--------eccccC---
Q 010302 155 QFSITSPDRRIRVFWFRT----GKLRRVYDESLEVAQDLQRSD-APLYRLEAIDFGRRMAVEK--------EIEKTE--- 218 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~t----g~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~r~~~e~--------e~~~~~--- 218 (513)
+|++++.|+.|++||+++ ++++..+ ++...+.++.+++ +..+.+.... +..+.+.. .+..+.
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBTTSCSEEEECCBCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCccccccccccccc
Confidence 999999999999999998 7777777 5666777888877 5433332222 22222211 111000
Q ss_pred ---CC----------CCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeee
Q 010302 219 ---TA----------PPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 284 (513)
Q Consensus 219 ---~~----------~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~ 284 (513)
.. ....++|+++|++ +++.+ .|++||+.+++++..+..+. ....+.. +.
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~--------------~~ 359 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISL--------------NK 359 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCE--------------EE
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC-CCceEEE--------------EE
Confidence 01 1112455556655 44444 49999999999998886432 1111111 11
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 285 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 285 ~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+ .+|+.++++|+ |++|+||.-++
T Consensus 360 ~-----------s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 360 F-----------SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp E-----------CTTSSEEEEEE-TTEEEEEECC-
T ss_pred E-----------ecCccEEEEec-CCcEEEEecCC
Confidence 1 26777888886 89999997653
No 70
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=1.7e-27 Score=252.25 Aligned_cols=227 Identities=19% Similarity=0.252 Sum_probs=191.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++||+++.|++|++||. +++....+. .|...+..++|+|+++ ++++++.|+.|++||. +++.+..
T Consensus 350 ~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~--~~~~~v~~~~~s~dg~--~l~~~~~d~~v~~~~~---~~~~~~~ 421 (577)
T 2ymu_A 350 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNR---NGQLLQT 421 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE--CCSSCEEEEEECTTSS--CEEEEETTSEEEEECT---TCCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec--CCCCCeEEEEECCCCC--EEEEEeCCCEEEEEeC---CCCEEEE
Confidence 478999999999999999999996 455555544 7888999999999998 8899999999999996 5778889
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|++++|+|++++|++++.|++|++||... +.+..+..|...|.+++|+||+++|++++
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---------------~~~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---------------QLLQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---------------CEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999999999999999999999999999632 44667788999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.|++|++|| .++++++.+.+|. ..+..++|+|+|++|++++.+
T Consensus 487 ~d~~i~iw~-~~~~~~~~~~~h~------------------------------------~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 487 DDKTVKLWN-RNGQLLQTLTGHS------------------------------------SSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp TTSEEEEEE-TTSCEEEEEECCS------------------------------------SCEEEEEECTTSSCEEEEETT
T ss_pred CCCEEEEEc-CCCCEEEEEeCCC------------------------------------CCEEEEEEcCCCCEEEEEECc
Confidence 999999999 4788877776532 234578999999999999877
Q ss_pred c-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 241 G-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 241 g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
+ |++||. +++++..+.+|...+.. +.+ .+|+..++|++.|+.|++|+
T Consensus 530 g~v~lwd~-~~~~~~~~~~h~~~v~~-----------------~~f-----------s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 530 KTVKLWNR-NGQLLQTLTGHSSSVWG-----------------VAF-----------SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SEEEEECT-TSCEEEEEECCSSCEEE-----------------EEE-----------CTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEeC-CCCEEEEEcCCCCCEEE-----------------EEE-----------cCCCCEEEEEeCCCEEEEeC
Confidence 6 999996 78888887665533222 222 26777889999999999995
No 71
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=7.2e-28 Score=246.65 Aligned_cols=257 Identities=14% Similarity=0.103 Sum_probs=181.3
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|+| ++++|+||+.|++|++||+++...........+...+.++.|++++. ++++++.|+.|++||++ ++.+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~---~~~~~ 244 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD---GKELW 244 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS---SCBCC
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC---cceeE
Confidence 57998 78999999999999999998765544444344455678899999988 99999999999999994 56777
Q ss_pred EeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
.+.+|...|.+++|+|++. +|++++.|++|++||+++.+. ...+.....|...|.+++|+|+|++|++
T Consensus 245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG-----------KASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS-----------SSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc-----------cceEEEeeeccccccceeECCCCCeeEE
Confidence 8889999999999999876 788999999999999987543 1223344579999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
++.|++|++||+.++++...+..+... ..+.+..-+. .-........+.+.++++++++..
T Consensus 314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~------------------~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~ 374 (435)
T 4e54_B 314 TDQKSEIRVYSASQWDCPLGLIPHPHR------------------HFQHLTPIKA-AWHPRYNLIVVGRYPDPNFKSCTP 374 (435)
T ss_dssp EESSSCEEEEESSSSSSEEEECCCCCC------------------CCSSSCCCBC-EECSSSSCEEEECCCCTTSCCSST
T ss_pred EcCCCEEEEEECCCCccceEEeccccc------------------ccccceeEEE-EEcCCCCEEEEEEcCCCCeEEEEe
Confidence 999999999999998877766543210 0000000000 000011112233444454444443
Q ss_pred cc--ceEEEEcccCcEEEEeCC-CCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 010302 239 LL--GIKIVNLHTNKVSRILGK-VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 315 (513)
Q Consensus 239 ~~--gi~v~d~~t~~~v~~~g~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~ 315 (513)
.. .|++||..+|+++..+.. +... +..+..| .+|+.++++|+ +++|+||
T Consensus 375 ~~~~~i~iwd~~~g~~~~~l~~~~~~~--v~s~~~f-------------------------spdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 375 YELRTIDVFDGNSGKMMCQLYDPESSG--ISSLNEF-------------------------NPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp TCCCCEEEECSSSCCEEEEECCSSCCC--CCCEEEE-------------------------CTTSSCEEEEC-SSEEEEC
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCCCc--EEEEEEE-------------------------CCCCCEEEEEc-CCcEEEE
Confidence 33 399999999999887643 3211 1111111 26777888887 5689999
Q ss_pred ecCCC
Q 010302 316 SRREP 320 (513)
Q Consensus 316 ~~~~~ 320 (513)
+.++.
T Consensus 427 ~~~~g 431 (435)
T 4e54_B 427 SQQEA 431 (435)
T ss_dssp CCC--
T ss_pred ECCcC
Confidence 87653
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=9.6e-29 Score=247.53 Aligned_cols=256 Identities=11% Similarity=0.067 Sum_probs=183.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC-CcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-NEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-~~~i~ 79 (513)
++|+|+|++||+++.|++|++||+.++.......+..|...+..+.|+|+++ ++++++.|++|++||+.... ..+..
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC------CCCCEE
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEcCCCCceeeee
Confidence 6899999999999999999999999874344445668999999999999988 89999999999999997222 23677
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcCCCCEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~s 158 (513)
.+..|...|.+++|+|++++|++++.|+.|++||+++.+. ......+.. |...|.+++|+|++++|++
T Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-----------WWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----------------CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc-----------ceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 7889999999999999999999999999999999977431 112455666 9999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccc-cCCCCCCceEEcCCCCEEEEc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK-TETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~-~~~~~~~~i~fd~~g~~li~~ 237 (513)
++.|++|++||+.+++...... ...++.++.....+.. .....+..++|+|+|++|+++
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPE--------------------ASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCC--------------------SCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE
T ss_pred EeCCCEEEEEEEEecccCCCcc--------------------ccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE
Confidence 9999999999997654211100 0011111111111000 223456789999999999999
Q ss_pred cccc-eEEEEcccCcE----EEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 238 TLLG-IKIVNLHTNKV----SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 238 s~~g-i~v~d~~t~~~----v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
+.++ |++||+.+++. +..+..+...+ ..+.+ .+|+.++++|++++.+
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~-----------s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPL-----------------RSLLW-----------ANESAIVAAGYNYSPI 275 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSSSCE-----------------EEEEE-----------EETTEEEEEESSSSEE
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCCCce-----------------EEEEE-----------cCCCCEEEEEcCCcEE
Confidence 8775 99999999876 44443333222 22222 2677889999877766
Q ss_pred EEEecC
Q 010302 313 YLFSRR 318 (513)
Q Consensus 313 ~i~~~~ 318 (513)
+|...
T Consensus 276 -~~~~~ 280 (377)
T 3dwl_C 276 -LLQGN 280 (377)
T ss_dssp -EECCC
T ss_pred -EEEeC
Confidence 66544
No 73
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.9e-27 Score=232.10 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=189.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc--ce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--PL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~--~i 78 (513)
++|+|+|++||+++.|++|+|||+..........+..|...+.++.|+++....++++++.|+.|++||+. +++ .+
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~ 94 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--NGRWSQI 94 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE--TTEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC--CCceeEe
Confidence 57999999999999999999999986555555566789999999999987322399999999999999998 554 77
Q ss_pred EEeecCCCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-----
Q 010302 79 ISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP----- 151 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp----- 151 (513)
..+..|...|.+++|+|+ +++|++++.|+.|++||+++... .....+..|...|.+++|+|
T Consensus 95 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 95 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------TSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC------------CCEEEEECCTTCEEEEEECCCC---
T ss_pred eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc------------eeeEEecCCCCceEEEEEcCccccc
Confidence 778899999999999999 99999999999999999977432 23345567899999999999
Q ss_pred --------CCCEEEEEeCCCcEEEEEcCCCeE----EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 152 --------DGKQFSITSPDRRIRVFWFRTGKL----RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 152 --------dg~~l~s~s~D~~I~iwd~~tg~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
++++|++++.|+.|++||+++++. +..+.+| .
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h------------------------------------~ 206 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH------------------------------------S 206 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC------------------------------------S
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc------------------------------------c
Confidence 699999999999999999987642 2222211 1
Q ss_pred CCCCceEEcCC---CCEEEEccccc-eEEEEcccCc---EEEEeCCCCccchhheeccccCCcCCcceeeeecccccccc
Q 010302 220 APPSNAIFDES---SNFLIYATLLG-IKIVNLHTNK---VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 292 (513)
Q Consensus 220 ~~~~~i~fd~~---g~~li~~s~~g-i~v~d~~t~~---~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (513)
..+..++|+|+ +++|++++.++ |++||+.+++ ....+.... ....+..+.+
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~------- 264 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK---------------FPDVLWRASW------- 264 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC---------------CSSCEEEEEE-------
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc---------------CCCcEEEEEE-------
Confidence 34567899999 89999998776 9999998864 222221111 1112222333
Q ss_pred CCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 293 SKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 293 ~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+|+.++++++.|+.|++|....
T Consensus 265 ----s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 265 ----SLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ----CSSSCCEEEEESSSSEEEEEEEE
T ss_pred ----cCCCCEEEEecCCCcEEEEeCCC
Confidence 26777899999999999998664
No 74
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=9.7e-28 Score=243.80 Aligned_cols=225 Identities=14% Similarity=0.171 Sum_probs=189.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|+|+|++||+|+.|++|++||+.+++.+.. +..|...+.++.|+|++. ++++++.|++|++||++ ++.++..
T Consensus 156 v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~--~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~--~~~~~~~ 229 (410)
T 1vyh_C 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQ--TGYCVKT 229 (410)
T ss_dssp EEECTTSSEEEEEETTSCCCEEETTSSCEEEC--CCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETT--TCCEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--EcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECC--CCcEEEE
Confidence 47999999999999999999999998876655 458889999999999988 89999999999999998 8889999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC--------
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-------- 152 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-------- 152 (513)
+.+|...|.++.|+|++.+|++++.|++|++||+.+ +.....+..|...|.+++|+|+
T Consensus 230 ~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--------------KECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--------------CceeeEecCCCceEEEEEEcCcccccchhh
Confidence 999999999999999999999999999999999977 3446677889999999999996
Q ss_pred ------------CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee--------
Q 010302 153 ------------GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-------- 212 (513)
Q Consensus 153 ------------g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-------- 212 (513)
|.+|++|+.|++|++||+++++++..+.+|...+.++.+++...+.+..... ..+.+..
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-KTLRVWDYKNKRCMK 374 (410)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-TEEEEECCTTSCCCE
T ss_pred hccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceEE
Confidence 6799999999999999999999999999998888888888765554433322 2232221
Q ss_pred eccccCCCCCCceEEcCCCCEEEEccccc-eEEEEc
Q 010302 213 EIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNL 247 (513)
Q Consensus 213 e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~ 247 (513)
.+. .....+..++|++++++|++++.++ |++|+.
T Consensus 375 ~~~-~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 375 TLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEc-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 111 1234567899999999999998776 999985
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=4.9e-27 Score=234.07 Aligned_cols=239 Identities=11% Similarity=0.039 Sum_probs=188.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI- 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~- 79 (513)
++|+|+|++||+++.|+.|++||+.+++......+..|...+..+.|++++. ++++++.|+.|++||+. +++...
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~--~~~~~~~ 89 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLK--GRTWKPT 89 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEE--TTEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEECC--CCeeeee
Confidence 5799999999999999999999999887334444558889999999999888 88999999999999997 554433
Q ss_pred -EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc-cccCCcceEEEEEcCCCCEEE
Q 010302 80 -SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE-ILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 -~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~ 157 (513)
.+..|...|.+++|+|++++|++++.|+.|++||++.... ...... ...|...|.+++|+|++++|+
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----------WWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----------EEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-----------ceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 3458999999999999999999999999999999876331 001122 245888999999999999999
Q ss_pred EEeCCCcEEEEEcCC------------------CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 158 ITSPDRRIRVFWFRT------------------GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 158 s~s~D~~I~iwd~~t------------------g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
+++.|+.|++||++. ++++..+.. ..
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~ 202 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS------------------------------------SC 202 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC------------------------------------CS
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecCC------------------------------------CC
Confidence 999999999999753 333333221 12
Q ss_pred CCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCC
Q 010302 220 APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFS 298 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (513)
..+..++|+++|++|++++.++ |++||+.+++++..+..+...+. .+.+ .+
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-----------------~~~~-----------~~ 254 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL-----------------AVTF-----------IT 254 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE-----------------EEEE-----------EE
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE-----------------EEEE-----------ec
Confidence 3456889999999999998776 99999999999988865542222 1222 15
Q ss_pred CCeEEEeeecCceEEEEecCC
Q 010302 299 DPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 299 d~~l~~s~~~~~~i~i~~~~~ 319 (513)
++.++++| .++.|++|..+.
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEET
T ss_pred CCCEEEEE-eCCeEEEEEccC
Confidence 67788888 899999998765
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=243.32 Aligned_cols=273 Identities=14% Similarity=0.177 Sum_probs=189.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc-----------eeEEEEcCCCC------------CcEEEEEEcCCCcceEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD-----------MMLMIRLPFIP------------GAVEWVYKQGDVKAGLAI 57 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~-----------~~~~~~l~~~~------------~~v~~v~~s~~~~~~~l~ 57 (513)
|+|||+|++||+|+.|+.|+|||+.+++ .... +..|. ..|..++|++++....++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYST--FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEE--EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecc--cccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 5799999999999999999999998765 2333 44676 789999999998433788
Q ss_pred EeCCCCeEEEEecCCCCCcc---------------------------------------eEE-eecCCCCeEEEEEcCCC
Q 010302 58 SDRNSSFVHIYDARADSNEP---------------------------------------LIS-KKVHMGPVKVMRYNPVF 97 (513)
Q Consensus 58 s~~~d~~I~iwd~~~~~~~~---------------------------------------i~~-~~~h~~~V~~l~~sp~~ 97 (513)
+++.|++|++||+. .... ... ..+|...|.+++|+|++
T Consensus 112 s~s~d~~i~iw~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 112 LSTNDKTIKLWKIS--ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEECSSCEEEEEEE--EEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred EeCCCCeEEEEecc--cccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence 88999999999986 3221 112 35899999999999999
Q ss_pred CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeE-
Q 010302 98 DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKL- 175 (513)
Q Consensus 98 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~s~s~D~~I~iwd~~tg~~- 175 (513)
++|+++ .|+.|++||+++...... .+. .....+..|...|.+++|+|++ ++|++++.|+.|++||+++++.
T Consensus 190 ~~l~s~-~d~~i~iwd~~~~~~~~~--~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 190 ETYLSA-DDLRINLWHLEITDRSFN--IVD----IKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp SEEEEE-CSSEEEEEETTEEEEEEE--EEE----CCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred CEEEEe-CCCeEEEEECCCCCceee--eee----cccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999999 799999999974211000 000 0011466799999999999999 9999999999999999999886
Q ss_pred ---EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEccc-Cc
Q 010302 176 ---RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHT-NK 251 (513)
Q Consensus 176 ---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t-~~ 251 (513)
+..+..+...... .........+..++|+++|++|++++...|++||+.+ ++
T Consensus 263 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNR------------------------SFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENR 318 (447)
T ss_dssp CTTCEEECCC-----C------------------------CHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSS
T ss_pred cceeeEeccCCCcccc------------------------ccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcc
Confidence 5666554321000 0000011245689999999999999886699999997 88
Q ss_pred EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 252 VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 252 ~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
++..+..++ ..+......|... .+.. .....| .+|+..+++|+.|+.|++|..++..
T Consensus 319 ~~~~~~~~~-~~~~~l~~~~~~~----~i~~-------~~~~~~-s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 319 PVETYQVHE-YLRSKLCSLYEND----CIFD-------KFECCW-NGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CSCCEESCG-GGTTTHHHHHHTS----GGGC-------CCCEEE-CTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ccceeeccc-ccccccccccccc----cccc-------ceEEEE-CCCCCEEEEeccCCEEEEEEcCCCc
Confidence 777776554 2221000011100 0000 001122 2667778999999999999876543
No 77
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=235.81 Aligned_cols=240 Identities=14% Similarity=0.096 Sum_probs=175.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC-CcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-NEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-~~~i~ 79 (513)
|+|||+|++||+|+.|++|++||+.+.+......+..|...+..++|+|+++ ++++++.|++|++||+.... ..++.
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 5799999999999999999999998876655666778999999999999988 99999999999999997221 23466
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+..|...|.+++|+|++++|++++.|++|++||.++.+ ......+.+|...|.+++|+|+|++|+++
T Consensus 145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~------------~~~~~~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD------------WVCCATLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC------------EEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 777999999999999999999999999999999886532 12345677899999999999999999999
Q ss_pred eCCCcEEEEEcCCC---------------eEEEEecc-cHHHHHHHhcCCCCccccccccccceeeeee-----------
Q 010302 160 SPDRRIRVFWFRTG---------------KLRRVYDE-SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK----------- 212 (513)
Q Consensus 160 s~D~~I~iwd~~tg---------------~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~----------- 212 (513)
+.|++|++||.... +++.++.+ |...+..+.+++...+.+.... +..+.+..
T Consensus 213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~ 291 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPNSDPQQPT 291 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEECTTSCTTSCC
T ss_pred eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEeCCCCCcceee
Confidence 99999999996431 34444443 3344445555543322221111 11111110
Q ss_pred -----eccccCCCCCCceEEcCCCC-EEEEccccc-eEEEEcccCcEEEE
Q 010302 213 -----EIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKVSRI 255 (513)
Q Consensus 213 -----e~~~~~~~~~~~i~fd~~g~-~li~~s~~g-i~v~d~~t~~~v~~ 255 (513)
.........+..++|+|++. +|++++.++ |++|++.+++....
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 00111234567899999984 888888776 99999998876543
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=1.1e-26 Score=239.48 Aligned_cols=276 Identities=15% Similarity=0.158 Sum_probs=215.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
++++++++|++|+.|++|++||+.+++.+..+. .|...+..+.|++++ ++++++.|++|++||++ +++++..+
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~---~l~s~s~dg~i~vwd~~--~~~~~~~~ 199 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIK--KGCCTHVF 199 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTT---EEEEEETTSCEEEEETT--TTEEEEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCC---EEEEEeCCCCEEEEECC--CCcEEEEE
Confidence 356788999999999999999999988766654 899999999998876 78899999999999998 88899999
Q ss_pred ecCCCCeEEEEEc--CCCCEEEEEcCCCcEEEecCCCCCCCC--------------------------------------
Q 010302 82 KVHMGPVKVMRYN--PVFDTVISADDKGIIEYWSPHTLQFPE-------------------------------------- 121 (513)
Q Consensus 82 ~~h~~~V~~l~~s--p~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------------------------- 121 (513)
.+|...|.+++|+ ++++++++++.|++|++||+++.....
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 279 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC
Confidence 9999999999999 577899999999999999987754210
Q ss_pred -----------cceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHh
Q 010302 122 -----------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQ 190 (513)
Q Consensus 122 -----------~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~ 190 (513)
.+..|+....+.+..+..|...|.+++|+|++++|++++.|+.|++||+++++++.++.+|...+..+.
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 123356667777788888999999999999999999999999999999999999999999888777777
Q ss_pred cCCCCccccccccccceeeeee------eccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEe-CCCCccc
Q 010302 191 RSDAPLYRLEAIDFGRRMAVEK------EIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRIL-GKVENND 263 (513)
Q Consensus 191 ~~~~~~~~l~~~~~~~r~~~e~------e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~-g~~~~~~ 263 (513)
+++. +.+... .+..+.+.. ............++|++++++|++++...|++||+.++++++.+ ..+. .
T Consensus 360 ~~~~--~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~--~ 434 (464)
T 3v7d_B 360 LSDK--FLVSAA-ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA--D 434 (464)
T ss_dssp ECSS--EEEEEE-TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTC--S
T ss_pred EcCC--EEEEEe-CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCC--C
Confidence 7643 111111 122222211 11112334556789999999999999777999999999998763 2222 1
Q ss_pred hhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 264 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
....++ + .+..+++++.+++.+++|-
T Consensus 435 ~v~~v~---------------~------------~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 435 QIWSVN---------------F------------KGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEE---------------E------------ETTEEEEEEEETTEEEEEE
T ss_pred cEEEEE---------------e------------cCCEEEEEEEeCCeEEEEE
Confidence 222222 1 3567888999999888874
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=7.2e-27 Score=232.86 Aligned_cols=279 Identities=11% Similarity=0.026 Sum_probs=198.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc---
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP--- 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~--- 77 (513)
++|+|+|++|++++.|++|++||+.+++......+..|...+..+.|++++. ++++++.|+.|++||+. ....
T Consensus 58 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~--~~~~~~~ 133 (372)
T 1k8k_C 58 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFE--QENDWWV 133 (372)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEE--TTTTEEE
T ss_pred EEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEec--CCCccee
Confidence 4799999999999999999999999988777777778889999999999988 88999999999999997 4442
Q ss_pred eEEe-ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc----ceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 78 LISK-KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES----EVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 78 i~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
...+ ..|...|.+++|+|++++|++++.|+.|++||++....... .+......+..+..+..|...|.+++|+|+
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 2333 47899999999999999999999999999999754221100 000001234556677789999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
+++|++++.|+.|++||+++++++..+..+. ..+..++|+++|+
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------~~v~~~~~~~~~~ 257 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAVATLASET------------------------------------LPLLAVTFITESS 257 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSS------------------------------------CCEEEEEEEETTE
T ss_pred CCEEEEEeCCCEEEEEECCCCceeEEEccCC------------------------------------CCeEEEEEecCCC
Confidence 9999999999999999999999887775421 2345789999999
Q ss_pred EEEEccccceEEEEccc--CcEE--EEeCCCCc--cchhheeccccCCcCCcce-------eee-eccccccccCCCCCC
Q 010302 233 FLIYATLLGIKIVNLHT--NKVS--RILGKVEN--NDRFLRIALYQGDRSSKKV-------RKI-PAAAANANESKEPFS 298 (513)
Q Consensus 233 ~li~~s~~gi~v~d~~t--~~~v--~~~g~~~~--~~r~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~ 298 (513)
+|+.+....|++|++.+ |+.. ..+..... ......+..|+........ ..+ ..+........+.++
T Consensus 258 ~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 337 (372)
T 1k8k_C 258 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 337 (372)
T ss_dssp EEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred EEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC
Confidence 99999777799999988 6422 22211110 0000001111000000000 000 011111233334456
Q ss_pred CC---eEEEeeecCceEEEEecCC
Q 010302 299 DP---TLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 299 d~---~l~~s~~~~~~i~i~~~~~ 319 (513)
++ .+++||+.|+.|++|.-++
T Consensus 338 ~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 338 GKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp TTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCcceeeEEEecCCCceEEEEecC
Confidence 76 8999999999999997553
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2e-26 Score=233.27 Aligned_cols=271 Identities=11% Similarity=0.109 Sum_probs=209.4
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
+++++..+++++.|++|++||+.+++........ |...+.+++|++++. ++++++.|+.|++||+. +++.+..+.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~--~~~~~~~~~ 173 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGS--FLSVGLGNGLVDIYDVE--SQTKLRTMA 173 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSS--EEEEEETTSCEEEEETT--TCCEEEEEC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCC--EEEEECCCCeEEEEECc--CCeEEEEec
Confidence 4555667888999999999999999887776643 778899999999888 89999999999999998 788899999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC
Q 010302 83 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D 162 (513)
+|...|.+++| ++++|++++.|+.|++||++.. ...+..+..|...|.+++|+|++++|++++.|
T Consensus 174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA-------------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS-------------SCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC-------------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 99999999999 5679999999999999999752 23456677899999999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccc--ccceeeeee-----ec-cccCCCCCCceEEcCCCCEE
Q 010302 163 RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID--FGRRMAVEK-----EI-EKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 163 ~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~r~~~e~-----e~-~~~~~~~~~~i~fd~~g~~l 234 (513)
+.|++||+++++.+..+..+...+.++.+++.....+.... ....+.+.. .+ .......+..++|+++|+++
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l 318 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEI 318 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeE
Confidence 99999999999999999888888888888875433332211 222232221 00 01123456789999999999
Q ss_pred EE--cccc-ceEEEEcccCcEEEEe--CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 010302 235 IY--ATLL-GIKIVNLHTNKVSRIL--GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 235 i~--~s~~-gi~v~d~~t~~~v~~~--g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~ 309 (513)
++ ++.+ .|++||+.+++..... ..+... +..+.+ .+|+.++++|+.|
T Consensus 319 ~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-----------------v~~~~~-----------s~dg~~l~s~~~d 370 (401)
T 4aez_A 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-----------------VLYSAL-----------SPDGRILSTAASD 370 (401)
T ss_dssp EEEECTTTCEEEEEEEETTEEEEEEEEECCSSC-----------------CCEEEE-----------CTTSSEEEEECTT
T ss_pred EEEeecCCCcEEEEecCCccceeEEEecCCCCC-----------------EEEEEE-----------CCCCCEEEEEeCC
Confidence 98 4344 5999999987766553 223211 111222 2678889999999
Q ss_pred ceEEEEecCCCC
Q 010302 310 HRIYLFSRREPE 321 (513)
Q Consensus 310 ~~i~i~~~~~~~ 321 (513)
+.|++|.-.+..
T Consensus 371 g~i~iw~~~~~~ 382 (401)
T 4aez_A 371 ENLKFWRVYDGD 382 (401)
T ss_dssp SEEEEEECCC--
T ss_pred CcEEEEECCCCc
Confidence 999999876544
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=224.30 Aligned_cols=270 Identities=12% Similarity=0.090 Sum_probs=200.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+||+++ +||+| .|++|+|||+.+++.+..+.+..|...|.+++|+++++ ++++|+.|++|++||++ +++++..
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~--~~~~~~~ 104 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQ--QQKRLRN 104 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETT--TTEEEEE
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecC--CceeEEE
Confidence 5799886 77765 59999999999999999998888999999999999998 99999999999999998 8899999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...+.++.+ ++..+++++.++.+++|+.... ...+..+.+|...+..+++++++++|++++
T Consensus 105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 105 MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA-------------EHHVATLSGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS-------------SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ecCccceEEEeec--CCCEEEEEecCCceEeeecCCC-------------ceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence 9999998877655 5679999999999999987663 234566778999999999999999999999
Q ss_pred CCCcEEEEEcCCCeE----EEEecccHHHHHHHhcCCCCccc--cccccccceeeeee------eccccCCCCCCceEEc
Q 010302 161 PDRRIRVFWFRTGKL----RRVYDESLEVAQDLQRSDAPLYR--LEAIDFGRRMAVEK------EIEKTETAPPSNAIFD 228 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~----~~~~~~~~~~i~~~~~~~~~~~~--l~~~~~~~r~~~e~------e~~~~~~~~~~~i~fd 228 (513)
.|++|++||+++++. ......+...+..+.+.+..... +......+.+.+.. ............+.|+
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~ 249 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 249 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeec
Confidence 999999999988652 22222222222222222221111 11111111222111 0011223455678999
Q ss_pred CCCCEEEEcc--c-cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 229 ESSNFLIYAT--L-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 229 ~~g~~li~~s--~-~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
++++.++.++ . ..|++||+.++++++.+.+|.+.+..+.+ .+|+.+++|
T Consensus 250 ~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~----------------------------spdg~~l~S 301 (318)
T 4ggc_A 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM----------------------------SPDGATVAS 301 (318)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE----------------------------CTTSSCEEE
T ss_pred ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE----------------------------cCCCCEEEE
Confidence 9999888754 3 35999999999999999777643332222 267888999
Q ss_pred eecCceEEEEecCC
Q 010302 306 AFKRHRIYLFSRRE 319 (513)
Q Consensus 306 ~~~~~~i~i~~~~~ 319 (513)
|+.|+.|+||.-.+
T Consensus 302 ~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 302 AAADETLRLWRCFE 315 (318)
T ss_dssp EETTTEEEEECCSC
T ss_pred EecCCeEEEEECCC
Confidence 99999999996544
No 82
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.3e-27 Score=244.74 Aligned_cols=207 Identities=11% Similarity=0.047 Sum_probs=167.0
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|+| ++++||+|+.||+|+|||+.+++....+.+.+|.+.|.+++|+| ++. ++++++.|++|++||++ . ...
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~iwd~~--~-~~~ 199 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRLQDFK--G-NIL 199 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEEEETT--S-CEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEEeecc--C-Cce
Confidence 57998 57899999999999999999888777777788999999999997 455 89999999999999996 3 333
Q ss_pred EEee---cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-
Q 010302 79 ISKK---VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK- 154 (513)
Q Consensus 79 ~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~- 154 (513)
..+. .+...+.+++|+|++++|++|+.||.|++||++. ..+..+..|...|.+++|+|++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---------------~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---------------KELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---------------CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---------------ceeEEEecccceEEeeeecCCCce
Confidence 3333 3445678999999999999999999999999854 34667788999999999999986
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
+|++++.|++|++||+++++....+.. . ......+..++|+|+|++|
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~-----------------~----------------~~h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLY-----------------S----------------LPHRHPVNAACFSPDGARL 311 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSB-----------------C----------------CBCSSCEEECCBCTTSSEE
T ss_pred EEEEecCcceeeEEecccccccceEEE-----------------e----------------eeccccccceeECCCCCee
Confidence 788999999999999987654221100 0 0112345678999999999
Q ss_pred EEccccc-eEEEEcccCcEEEEeCCCC
Q 010302 235 IYATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 235 i~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
++++.++ |++||+.++++...+-.+.
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred EEEcCCCEEEEEECCCCccceEEeccc
Confidence 9998776 9999999998877765443
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=243.74 Aligned_cols=261 Identities=11% Similarity=0.078 Sum_probs=189.0
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccC---CceeE-EEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-C
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVN---YDMML-MIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-S 74 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~---~~~~~-~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-~ 74 (513)
|+|+| +|++||+|+.|++|+|||+.+ +.... ...+ .|...+.+++|++++. ++++++.|+.|++||+... .
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~ 145 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQ 145 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEE
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccC
Confidence 57999 999999999999999999976 33111 1222 3788999999999888 8999999999999998311 3
Q ss_pred CcceEEeec------------CCCCeEEEE--EcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-
Q 010302 75 NEPLISKKV------------HMGPVKVMR--YNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK- 139 (513)
Q Consensus 75 ~~~i~~~~~------------h~~~V~~l~--~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (513)
++.+..+.. +...+.++. +++++++|++++.|+.|++||+++ ++.+..+..
T Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~ 211 (437)
T 3gre_A 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT--------------LERLQIIENS 211 (437)
T ss_dssp TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT--------------CCEEEEEECC
T ss_pred CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------CeeeEEEccC
Confidence 333333221 556677777 557899999999999999999987 344666666
Q ss_pred -CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-ccHHHHHHHhcCCCCccccccccccceeeeeeecccc
Q 010302 140 -SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD-ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 217 (513)
Q Consensus 140 -~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~ 217 (513)
|...|.+++|+|++++|++++.|+.|++||+++++++..+. .+..
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------- 258 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA--------------------------------- 258 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE---------------------------------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC---------------------------------
Confidence 78899999999999999999999999999999999988764 2111
Q ss_pred CCCCCCce----EEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeec----ccc
Q 010302 218 ETAPPSNA----IFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA----AAA 288 (513)
Q Consensus 218 ~~~~~~~i----~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~ 288 (513)
.+..+ .|++++++|++++.++ |++||+.+++++..+..++.......+.. .........+ +..
T Consensus 259 ---~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 259 ---PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-----IEKGLEELNFCGIRSLN 330 (437)
T ss_dssp ---EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-----BCSSGGGCCCCCCCSGG
T ss_pred ---ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-----cccccccceecccccCC
Confidence 12344 3566788999998887 99999999999999876653333222221 1100110001 111
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 289 NANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 289 ~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
......+. +..++++|+.|++|++|+-+++.
T Consensus 331 ~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 331 ALSTISVS--NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp GGCCEEEE--TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ceEEEEEC--CceEEEecCCCCeEEEEECCCcc
Confidence 12222232 55789999999999999876543
No 84
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=1.4e-26 Score=245.28 Aligned_cols=262 Identities=18% Similarity=0.205 Sum_probs=208.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|||++|++++.|++|++||.. ++.... +..|...+..++++|++. .+++++.|+.|++||. +...+..
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~--~~~h~~~v~~~~~~~~~~--~l~t~~~d~~i~~w~~---~~~~~~~ 339 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNRN-GQLLQT--LTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR---NGQHLQT 339 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETT-SCEEEE--ECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEET---TSCEEEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEE--EecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeC---CCCeeEE
Confidence 4789999999999999999999975 344444 457889999999999988 8899999999999998 4567788
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...|.+++|+|++++|++++.|+.+++||.. ++.+..+..|...|.+++|+||+++|++++
T Consensus 340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---------------~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---------------GQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---------------CCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC---------------CCEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 88999999999999999999999999999999863 244667778999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-------eccccCCCCCCceEEcCCCCE
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-------EIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-------e~~~~~~~~~~~i~fd~~g~~ 233 (513)
.|+.|++||. +++.+..+.+|...+..+.++++..+.+..... +.+.+.. .+ ......+..++|+|+|++
T Consensus 405 ~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-~~v~~w~~~~~~~~~~-~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 405 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD-KTVKLWNRNGQLLQTL-TGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTSCEEEEE-ECCSSCEEEEEECTTSCE
T ss_pred CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC-CEEEEEECCCCEEEEE-cCCCCCEEEEEEcCCCCE
Confidence 9999999994 678888888888777778887764433322221 2222211 11 122345678999999999
Q ss_pred EEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 010302 234 LIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 312 (513)
Q Consensus 234 li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i 312 (513)
|++++.++ |++||. ++++++.+.+|...+.. +.+ .+|+.++++|+.|+.|
T Consensus 482 las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~-----------------l~~-----------s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 482 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG-----------------VAF-----------SPDGQTIASASDDKTV 532 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEEEECCSSCEEE-----------------EEE-----------CTTSSCEEEEETTSEE
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEE-----------------EEE-----------cCCCCEEEEEECcCEE
Confidence 99988775 999995 78888887665533322 222 2678889999999999
Q ss_pred EEEec
Q 010302 313 YLFSR 317 (513)
Q Consensus 313 ~i~~~ 317 (513)
++|+.
T Consensus 533 ~lwd~ 537 (577)
T 2ymu_A 533 KLWNR 537 (577)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99974
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=1.3e-26 Score=230.02 Aligned_cols=261 Identities=10% Similarity=0.106 Sum_probs=187.4
Q ss_pred CeEecC----CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 1 MQVSVD----GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~d----g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
++|+|+ |++|++++.|++|++||+.+++.+..+. .|...+..+.|+| ++. ++++++.|+.|++||++ ++
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~--~~ 148 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQ--TD 148 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--SCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETT--TT
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--CCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEee--cC
Confidence 468998 7799999999999999999988877655 7889999999999 777 89999999999999998 77
Q ss_pred cceEEe---ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcc---eeeee-----------cCCccccccc
Q 010302 76 EPLISK---KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE---VSFRL-----------KSDTNLFEIL 138 (513)
Q Consensus 76 ~~i~~~---~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~-----------~~~~~~~~~~ 138 (513)
+.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++.+..... ..+.. ..........
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 888887 689999999999999999999999999999999764321000 00000 0000112223
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccC
Q 010302 139 KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE 218 (513)
Q Consensus 139 ~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~ 218 (513)
.|...|.+++|+ +++|++++.|+.|++||+++++.... .+.... ........+. ..
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~-------------------~~~~~~--~~~~~~~~~~-~~ 284 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDID-------------------KIKPSE--SNVTILGRFD-YS 284 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGG-------------------GCCTTC--CCEEEEEEEE-CS
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccc-------------------ccccCC--cchheecccc-cc
Confidence 388999999998 78999999999999999987653100 000000 0000011111 12
Q ss_pred CCCCCceEEcCC--CCEEEEccccc-eEEEEcccCcE----EEEeCCCCccchhheeccccCCcCCcceeeeeccccccc
Q 010302 219 TAPPSNAIFDES--SNFLIYATLLG-IKIVNLHTNKV----SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 291 (513)
Q Consensus 219 ~~~~~~i~fd~~--g~~li~~s~~g-i~v~d~~t~~~----v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (513)
...+..++|+++ |++|++++.++ |++||+.+++. +..+..+. ....+..+.+
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~------ 343 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK---------------CGAAIRQTSF------ 343 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT---------------CCSCEEEEEE------
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc---------------cCCceEEEEe------
Confidence 235677889888 99999998776 99999998753 33443331 1122333333
Q ss_pred cCCCCCCCCeEEEeeecCceEEEEec
Q 010302 292 ESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 292 ~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
.+|+.++++|+.|+.|++|..
T Consensus 344 -----s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 344 -----SRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -----CTTSSEEEEEETTSEEEEEEC
T ss_pred -----CCCCCeEEEEeCCCEEEEEEe
Confidence 268888999999999999964
No 86
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=4.9e-26 Score=223.51 Aligned_cols=281 Identities=10% Similarity=0.083 Sum_probs=188.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce--eEEEEcCCCCCcEEEEEEcCC--CcceEEEEeCCCCeEEEEecCCCCC-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM--MLMIRLPFIPGAVEWVYKQGD--VKAGLAISDRNSSFVHIYDARADSN- 75 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~--~~~~~l~~~~~~v~~v~~s~~--~~~~~l~s~~~d~~I~iwd~~~~~~- 75 (513)
|+|+|+|++||+++.|++|++||+.++.. .....+..|...+.+++|++. +. ++++++.|+.|++||++....
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v~vwd~~~~~~~ 94 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTVKLWEEDPDQEE 94 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCEEEEEECTTSCT
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeEEEEecCCCccc
Confidence 57999999999999999999999987532 233344578899999999984 55 899999999999999973221
Q ss_pred ------cceEEeecCCCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 76 ------EPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 76 ------~~i~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
+++..+..|...|.+++|+|+ +++|++++.|+.|++||+++.+..... ...............|...+.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (351)
T 3f3f_A 95 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW-TLTSEMKVLSIPPANHLQSDFCL 173 (351)
T ss_dssp TSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC-EEEEEEESCSCCCSSCSCCCEEE
T ss_pred ccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc-cccccccccccccCCcccceeEE
Confidence 457788899999999999999 999999999999999999876543221 11100011111122577889999
Q ss_pred EEcCC---CCEEEEEeCCCcEEEEEcCCCeE--EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 148 EVSPD---GKQFSITSPDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 148 ~~spd---g~~l~s~s~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
+|+|+ +.++++++.|+.+.+|+..+++. +..+.+| ...+
T Consensus 174 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------------------------------~~~i 217 (351)
T 3f3f_A 174 SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH------------------------------------KSLI 217 (351)
T ss_dssp EECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC------------------------------------CSCE
T ss_pred EeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC------------------------------------Ccce
Confidence 99997 99999999999998888877765 3333221 1245
Q ss_pred CceEEcCCC----CEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheecccc-----C--------------CcCCc
Q 010302 223 SNAIFDESS----NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQ-----G--------------DRSSK 278 (513)
Q Consensus 223 ~~i~fd~~g----~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~-----~--------------~~~~~ 278 (513)
..++|+|++ ++|++++.++ |++||+.++...................... + .....
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEE
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc
Confidence 688999998 8899988776 9999999875444332211011000000000 0 00000
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 279 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
.+..+..+........|. +++.+++||+.|+.|++|......
T Consensus 298 ~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWN-LTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp EEEEECTTSSCEEEEEEC-SSSCCEEEEETTSCEEEEEECTTS
T ss_pred EEEEEecccccEEEEEEc-CCCCEEEEecCCCcEEEEecCcCc
Confidence 111111111123333443 677889999999999999876543
No 87
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=8.4e-27 Score=230.71 Aligned_cols=225 Identities=15% Similarity=0.119 Sum_probs=179.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce--eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM--MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~--~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
++|+|+|++||+++.|+.|++|++.+.+. .....+..|...+.++.|++++. +++++.|++|++||++ +++++
T Consensus 103 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~--~~~~~ 177 (340)
T 1got_B 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIE--TGQQT 177 (340)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETT--TTEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECC--CCcEE
Confidence 47999999999999999999999987542 23334557889999999987754 7788899999999998 88899
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
..+.+|...|.+++|+|++++|++++.|++|++||+++ +..+..+..|...|.+++|+|++++|++
T Consensus 178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~--------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s 243 (340)
T 1got_B 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--------------GMCRQTFTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------CSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------CeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999977 3456677889999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccH--HHHHHHhcCCCCccccccccccceeeeee--------eccccCCCCCCceEEc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESL--EVAQDLQRSDAPLYRLEAIDFGRRMAVEK--------EIEKTETAPPSNAIFD 228 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~~~r~~~e~--------e~~~~~~~~~~~i~fd 228 (513)
++.|++|++||+++++.+..+.... ..+.++.++++..+.+.....+. +.+.. .+. .....+.+++|+
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~-~h~~~v~~~~~s 321 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA-GHDNRVSCLGVT 321 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE-CCSSCEEEEEEC
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEee-cCCCcEEEEEEc
Confidence 9999999999999999888775322 23556666666444433332221 22211 111 223466789999
Q ss_pred CCCCEEEEccccc-eEEEE
Q 010302 229 ESSNFLIYATLLG-IKIVN 246 (513)
Q Consensus 229 ~~g~~li~~s~~g-i~v~d 246 (513)
++|++|++++.++ |++||
T Consensus 322 ~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEcCCccEEecC
Confidence 9999999998776 99996
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.4e-27 Score=239.30 Aligned_cols=286 Identities=15% Similarity=0.088 Sum_probs=196.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEcc---CCceeEEE--------EcCC--CCCcEEEEE--EcCCCcceEEEEeCCCCeE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVV---NYDMMLMI--------RLPF--IPGAVEWVY--KQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~---~~~~~~~~--------~l~~--~~~~v~~v~--~s~~~~~~~l~s~~~d~~I 65 (513)
|+|+|++++|++++.|++|++||+. +++..... .+.. +...+.++. +++++. ++++++.|+.|
T Consensus 117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i 194 (437)
T 3gre_A 117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALTNLSRV 194 (437)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEETTSEE
T ss_pred EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEeCCCeE
Confidence 5799999999999999999999994 44443322 2222 345566666 345555 99999999999
Q ss_pred EEEecCCCCCcceEEeec--CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCc
Q 010302 66 HIYDARADSNEPLISKKV--HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKT 142 (513)
Q Consensus 66 ~iwd~~~~~~~~i~~~~~--h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 142 (513)
++||++ +++++..+.. |...|++++|+|++++|++++.|+.|++||+++ +..+..+. .|..
T Consensus 195 ~iwd~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~ 258 (437)
T 3gre_A 195 IIFDIR--TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF--------------NVLIRSWSFGDHA 258 (437)
T ss_dssp EEEETT--TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT--------------TEEEEEEBCTTCE
T ss_pred EEEeCC--CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC--------------ccEEEEEecCCCC
Confidence 999998 8888999987 899999999999999999999999999999987 34455554 6778
Q ss_pred ceEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccc-c
Q 010302 143 TVSAIEVSP----DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK-T 217 (513)
Q Consensus 143 ~v~~v~~sp----dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~-~ 217 (513)
.|.+++|+| ++++|++++.|+.|++||+++++++..+.++...+..+.+++......+ ..+.. .
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~ 327 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE-----------LNFCGIR 327 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG-----------CCCCCCC
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc-----------ceecccc
Confidence 899996654 6889999999999999999999999999887655554444443211100 00000 1
Q ss_pred CCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCc-cchhheecccc-------C--CcCCcceeeeecc
Q 010302 218 ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVEN-NDRFLRIALYQ-------G--DRSSKKVRKIPAA 286 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~-~~r~~~~~~~~-------~--~~~~~~~~~~~~~ 286 (513)
....+..++|+ ++++|++++.++ |++||+.+++++..+.++.. ...+....+-. . ............+
T Consensus 328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 406 (437)
T 3gre_A 328 SLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH 406 (437)
T ss_dssp SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred cCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence 22346788999 788999888665 99999999998888865421 11111111000 0 0000000111112
Q ss_pred ccccccCCCCCC-CCeEEEeeecCceEEEEe
Q 010302 287 AANANESKEPFS-DPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 287 ~~~~~~~~~~~~-d~~l~~s~~~~~~i~i~~ 316 (513)
........+.+. +..+++||++|+.|+||+
T Consensus 407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 222222233233 477999999999999994
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-27 Score=247.82 Aligned_cols=239 Identities=8% Similarity=0.020 Sum_probs=172.0
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEE--EEcCCCCCcEEEEEEcCCC----cceEEEEeCCCCeEEEEecCCCCC--
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLM--IRLPFIPGAVEWVYKQGDV----KAGLAISDRNSSFVHIYDARADSN-- 75 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~--~~l~~~~~~v~~v~~s~~~----~~~~l~s~~~d~~I~iwd~~~~~~-- 75 (513)
+|+++.||+++.|++|+|||+.+++.... ..+..|.+.+..++|+|++ ...++++++.|++|++||+.....
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 34455566677899999999988765321 2234567889999999972 233899999999999999963211
Q ss_pred -------cceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE-
Q 010302 76 -------EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI- 147 (513)
Q Consensus 76 -------~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v- 147 (513)
++...+.+|...|++++|+|+ ..|++|+.||+|++||+++.. .+...+..|...|.++
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-------------~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-------------VPSFYDQVHDSYILSVS 315 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS-------------SCSEEEECSSSCEEEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC-------------CceEEeecccccEEEEE
Confidence 234577899999999999986 489999999999999997632 2334567899999999
Q ss_pred -EEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCce
Q 010302 148 -EVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNA 225 (513)
Q Consensus 148 -~~spdg-~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i 225 (513)
+|+|+| ++||++|.|++|+|||+++++++.++.++. ....+..+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~----------------------------------~~~~v~~v 361 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF----------------------------------RGSNLVPV 361 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC----------------------------------SCCSCCCE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc----------------------------------ccCcccce
Confidence 578888 899999999999999998876544443211 00124578
Q ss_pred EEcCCCCEEEEcccc-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEE
Q 010302 226 IFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLC 304 (513)
Q Consensus 226 ~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (513)
+|+|+++.+++++.+ .|++||+.+++++..+.+|.+.+. .+.+ .+++.+++
T Consensus 362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~-----------------sva~-----------Sp~g~~l~ 413 (524)
T 2j04_B 362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT-----------------AIGV-----------SRLHPMVL 413 (524)
T ss_dssp EEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE-----------------EEEC-----------CSSCCBCE
T ss_pred EeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE-----------------EEEe-----------CCCCCeEE
Confidence 999999998887766 499999999988777655553222 2222 25677789
Q ss_pred eeecCceEEEEecC
Q 010302 305 CAFKRHRIYLFSRR 318 (513)
Q Consensus 305 s~~~~~~i~i~~~~ 318 (513)
||+.|+.|++|...
T Consensus 414 Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 414 AGSADGSLIITNAA 427 (524)
T ss_dssp EEETTTEEECCBSC
T ss_pred EEECCCEEEEEech
Confidence 99999999999743
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=4.8e-26 Score=231.99 Aligned_cols=270 Identities=13% Similarity=0.106 Sum_probs=207.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+||++ ++||+|. |++|+|||+.+++....+.+..|...|.+++|++++. ++++|+.|++|++||+. +++++..
T Consensus 111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~--~~~~~~~ 184 (420)
T 4gga_A 111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQ--QQKRLRN 184 (420)
T ss_dssp EEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETT--TTEEEEE
T ss_pred EEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcC--CCcEEEE
Confidence 578876 4777665 9999999999999999988888889999999999998 99999999999999998 8899999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
+.+|...+.+++|+ +..|++++.|+.+++||.... ...+..+.+|...+..+.|+|+++++++++
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~-------------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA-------------EHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS-------------SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc-------------ceeeEEecccccceeeeeecCCCCeeeeee
Confidence 99999999998874 679999999999999998763 234566778999999999999999999999
Q ss_pred CCCcEEEEEcCCCe----EEEEecccHHHHHHHhcCCCCccccc--cccccceeeeee-----ec-cccCCCCCCceEEc
Q 010302 161 PDRRIRVFWFRTGK----LRRVYDESLEVAQDLQRSDAPLYRLE--AIDFGRRMAVEK-----EI-EKTETAPPSNAIFD 228 (513)
Q Consensus 161 ~D~~I~iwd~~tg~----~~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~~~r~~~e~-----e~-~~~~~~~~~~i~fd 228 (513)
.|+.+++|+..+++ .+.....+...+..+.+.+.....+. .....+.+.+.. .+ .......+..+.|+
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~ 329 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 329 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEE
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeec
Confidence 99999999998865 34455555555555555553222211 111122222211 00 01223456788999
Q ss_pred CCCCEEEEcc--c-cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 229 ESSNFLIYAT--L-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 229 ~~g~~li~~s--~-~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
++++.++.++ . ..|+|||+.+++++..+.+|.+.+..+. + .+|+.+++|
T Consensus 330 ~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~-----------------~-----------spdg~~l~S 381 (420)
T 4gga_A 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT-----------------M-----------SPDGATVAS 381 (420)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE-----------------E-----------CTTSSCEEE
T ss_pred CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-----------------E-----------cCCCCEEEE
Confidence 9999998764 3 3599999999999999977764333222 2 278888999
Q ss_pred eecCceEEEEecCC
Q 010302 306 AFKRHRIYLFSRRE 319 (513)
Q Consensus 306 ~~~~~~i~i~~~~~ 319 (513)
|+.|+.|+||.-.+
T Consensus 382 ~s~D~tvriWdv~~ 395 (420)
T 4gga_A 382 AAADETLRLWRCFE 395 (420)
T ss_dssp EETTTEEEEECCSC
T ss_pred EecCCeEEEEECCC
Confidence 99999999996543
No 91
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=2.5e-26 Score=228.66 Aligned_cols=192 Identities=13% Similarity=0.091 Sum_probs=164.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|++++|++++.|++|++||+++++.+..+. .|...+..+.+++.....++++++.|++|++||++ +++++..
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~--~~~~~~~ 235 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR--SGQCVQA 235 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT--TCCEEEE
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC--CCcEEEE
Confidence 4689999999999999999999999998877665 78889999999886544489999999999999998 8889999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc--cCCcceEEEEEcCCCCEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL--KSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~spdg~~l~s 158 (513)
+.+|...|.+++|+|++++|++++.|++|++||+++.+ .+..+. .+...+.+++|+|+|++|++
T Consensus 236 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--------------~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR--------------EVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 99999999999999999999999999999999997732 222222 23456899999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
++.|++|++||+.+++.+..+.+|. ..+..++|+|+|++|++++
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~~h~------------------------------------~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILFGHE------------------------------------NRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCS------------------------------------SCEEEEEECTTSSCEEEEE
T ss_pred EECCCcEEEEECCCCceEEEEECCC------------------------------------CcEEEEEECCCCCEEEEEc
Confidence 9999999999999999887775432 2345789999999999998
Q ss_pred ccc-eEEEE
Q 010302 239 LLG-IKIVN 246 (513)
Q Consensus 239 ~~g-i~v~d 246 (513)
.++ |++|+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 876 89995
No 92
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=228.77 Aligned_cols=233 Identities=14% Similarity=0.067 Sum_probs=167.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC-----ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC--
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY-----DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-- 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~-----~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-- 73 (513)
|+|+|+|++||+|+.|++|+|||+... .......+..|...+..++|+|++. ++++++.|++|++||++..
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 579999999999999999999998532 1223334568899999999999988 9999999999999999421
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC-
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD- 152 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd- 152 (513)
..+++..+.+|...|.+++|+|++++|++++.|++|++||..+.. .+++..+.+|...|.+++|+|+
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD------------WECVAVLNGHEGTVWSSDFDKTE 209 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCSS
T ss_pred CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC------------eeEEEEccCCCCcEEEEEecCCC
Confidence 235677888999999999999999999999999999999875521 1456678889999999999998
Q ss_pred -CCEEEEEeCCCcEEEEEcCCC--------eEEEEecc-cHHHHHHHhcCCCCccccccccccceeeeeee-------c-
Q 010302 153 -GKQFSITSPDRRIRVFWFRTG--------KLRRVYDE-SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE-------I- 214 (513)
Q Consensus 153 -g~~l~s~s~D~~I~iwd~~tg--------~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e-------~- 214 (513)
+.+|++++.|++|++||+.++ .+...+.. |...+.++.+++...+.. ...+..+.+... +
T Consensus 210 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s--~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIAS--VGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEE--EETTSCEEEEEEETTEEEEEE
T ss_pred CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEE--EeCCCEEEEEEcCCCceEEEe
Confidence 779999999999999999765 45555554 555566666664432211 111222222210 1
Q ss_pred ---cccCCCCCCceEEcC--CCCEEEEccccc-eEEEEccc
Q 010302 215 ---EKTETAPPSNAIFDE--SSNFLIYATLLG-IKIVNLHT 249 (513)
Q Consensus 215 ---~~~~~~~~~~i~fd~--~g~~li~~s~~g-i~v~d~~t 249 (513)
..+....+..++|+| ++++|++++.++ |++||+.+
T Consensus 288 ~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 111112556789999 689999998776 99999864
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=1.6e-26 Score=232.81 Aligned_cols=296 Identities=12% Similarity=0.100 Sum_probs=206.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc------eeEEEEcCCCCCcEEEEEEcCC----C---cceEEEEeCCCCeEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD------MMLMIRLPFIPGAVEWVYKQGD----V---KAGLAISDRNSSFVHI 67 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~------~~~~~~l~~~~~~v~~v~~s~~----~---~~~~l~s~~~d~~I~i 67 (513)
|+|+| ++||+++.|++|++||+.+++ ....+. .|...+.++.|+++ + . ++++++.|+.|++
T Consensus 22 ~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~~--~l~s~~~dg~i~i 95 (397)
T 1sq9_A 22 VSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELC--LVATTSFSGDLLF 95 (397)
T ss_dssp EEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEE--EEEEEETTSCEEE
T ss_pred EEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCcccc--EEEEEcCCCCEEE
Confidence 46777 899999999999999999887 455544 78899999999998 7 6 8899999999999
Q ss_pred EecCCCCCcc-----eEEeecC-----CCCeEEEEEc----CCCCE-EEEEcCCCcEEEecCCC------CCCCCcceee
Q 010302 68 YDARADSNEP-----LISKKVH-----MGPVKVMRYN----PVFDT-VISADDKGIIEYWSPHT------LQFPESEVSF 126 (513)
Q Consensus 68 wd~~~~~~~~-----i~~~~~h-----~~~V~~l~~s----p~~~~-l~s~s~dg~i~iwd~~~------~~~~~~~~~~ 126 (513)
||+. +.+. +..+..| ...|.+++|+ |++++ |++++.|+.|++||+++ .+....
T Consensus 96 w~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---- 169 (397)
T 1sq9_A 96 YRIT--REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW---- 169 (397)
T ss_dssp EEEE--ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC----
T ss_pred EEcc--CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec----
Confidence 9997 6665 7888888 5999999999 99999 99999999999999876 332110
Q ss_pred eecCCcccccc-------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc---c---HHHHHHHhcCC
Q 010302 127 RLKSDTNLFEI-------LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE---S---LEVAQDLQRSD 193 (513)
Q Consensus 127 ~~~~~~~~~~~-------~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~---~---~~~i~~~~~~~ 193 (513)
.....+ ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. | ...+.++.+++
T Consensus 170 -----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 170 -----SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp -----CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred -----cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 000033 3478889999999999 999999999999999999999999988 7 77777888877
Q ss_pred CCcccccccccc--ceeeee--------eecccc------------CCCCCCceEEcCCCCEEEEccccc-eEEEEcccC
Q 010302 194 APLYRLEAIDFG--RRMAVE--------KEIEKT------------ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 250 (513)
Q Consensus 194 ~~~~~l~~~~~~--~r~~~e--------~e~~~~------------~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~ 250 (513)
+..+.+.....+ ..+.+. ..+... ....+..++|+++|++|++++.++ |++||+.++
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 654443333220 122221 111110 234567899999999999998776 999999999
Q ss_pred cEEEEeC------CCCccchhheeccccCCcCCcceeeeeccccc-cccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 251 KVSRILG------KVENNDRFLRIALYQGDRSSKKVRKIPAAAAN-ANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 251 ~~v~~~g------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
+++..+. .++...+.-....++. ....+..+.+.... .++. ...++.++++|+.|+.|++|.-+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~v~~~~~~~~g~~~~~--~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSL--AEPGVFDVKFLKKGWRSGM--GADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBC--SSCCEEEEEEECTTTSBST--TCTTSCEEEEEETTTEEEEEEEE
T ss_pred ceeEEEecccCcccchhhhhccccccccc--cCCceeEEEeccccccccc--cccccceEEEecCCCcEEEEEcC
Confidence 9998886 3310000000000000 01223333332000 0000 01234789999999999999754
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=4e-26 Score=251.75 Aligned_cols=237 Identities=12% Similarity=0.110 Sum_probs=199.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|||+|++||+++.|++|+|||+.+++....+. .|...+..+.|+|++. ++++++.|+.|++||+. +++.+..
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~--~~~~~~~ 92 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKN--WIIVGSDDFRIRVFNYN--TGEKVVD 92 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEGGGT--EEEEEETTSEEEEEETT--TCCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEECC--CCcEEEE
Confidence 5799999999999999999999999988877665 7889999999999988 89999999999999998 8889999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s~ 159 (513)
+.+|...|++++|+|++++|++++.|+.|++||+.+. ......+..|...|.+++|+| +++.|+++
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-------------WALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-------------SEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-------------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 9999999999999999999999999999999998652 134556778999999999999 89999999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC--CCCEEEEc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--SSNFLIYA 237 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~--~g~~li~~ 237 (513)
+.|+.|++||+.+++....+.. .....+..++|++ +|++|+++
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~-----------------------------------~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTT-----------------------------------GQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEEC-----------------------------------CCTTCCCEEEECCSTTCCEEEEE
T ss_pred eCCCeEEEEECCCCcceeEEec-----------------------------------CCCCCEEEEEEEECCCCCEEEEE
Confidence 9999999999988765444422 1123456889998 99999998
Q ss_pred cccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 238 TLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 238 s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
+.++ |++||+.+++.+..+..+...+..+.+ .+++.++++|+.|+.|++|+
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~----------------------------~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF----------------------------HPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCSSCEEEEEE----------------------------CSSSSEEEEEETTSCEEEEE
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE----------------------------cCCCCEEEEEeCCCeEEEEE
Confidence 8776 999999999998888655433222222 26677899999999999998
Q ss_pred cCC
Q 010302 317 RRE 319 (513)
Q Consensus 317 ~~~ 319 (513)
...
T Consensus 257 ~~~ 259 (814)
T 3mkq_A 257 SST 259 (814)
T ss_dssp TTT
T ss_pred CCC
Confidence 664
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=9.3e-26 Score=260.35 Aligned_cols=268 Identities=13% Similarity=0.116 Sum_probs=211.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|||||++||+|+.|++|++||+.+++.+..+. .|...+.+++|+|++. ++++++.|+.|++||+. +++++..
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd~~--~~~~~~~ 694 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDS--YIATCSADKKVKIWDSA--TGKLVHT 694 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TCCEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEecCCC--EEEEEeCCCeEEEEECC--CCceEEE
Confidence 4799999999999999999999999988776654 8899999999999998 89999999999999998 8899999
Q ss_pred eecCCCCeEEEEEcC--CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 81 KKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
+.+|...|.+++|+| ++.++++++.|+.|++||+++ +..+..+.+|...|.+++|+|++++|++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--------------KECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--------------SSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--------------cchhheecCCCCCEEEEEEecCCCEEEE
Confidence 999999999999999 566899999999999999977 4456777889999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHH-------------HHHHHhcCCCCccccccccccceeee--------eeecccc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLE-------------VAQDLQRSDAPLYRLEAIDFGRRMAV--------EKEIEKT 217 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~-------------~i~~~~~~~~~~~~l~~~~~~~r~~~--------e~e~~~~ 217 (513)
++.|++|++||+.+++....+..... .+.++.++++..+.+...+ ..+.+ ...+...
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEEEEETTTCCEEEEEECS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEEEEEecCCCceeEEcCC
Confidence 99999999999999998877643211 1222333333222111111 11111 0111123
Q ss_pred CCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCC
Q 010302 218 ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEP 296 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (513)
....+..++|+++|+++++++.++ |++||+.+++.+..+.+|...+..+.+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~---------------------------- 890 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF---------------------------- 890 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE----------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE----------------------------
Confidence 345678899999999999998776 999999999999888766533332222
Q ss_pred CCCCeEEEeeecCceEEEEecC
Q 010302 297 FSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 297 ~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.+|+..+++++.|+.+++|+.+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCCCEEEEEeCCCeEEEEEcc
Confidence 2677789999999999999854
No 96
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=2.3e-26 Score=227.80 Aligned_cols=226 Identities=16% Similarity=0.216 Sum_probs=171.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|++++|++++.|++|++||+.+++....+. .|...+.+++|+|++. .+++++.|++|++||+. ......
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~---~~~~~~ 154 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL---GECKFS 154 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS---SCEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc---CCceee
Confidence 4799999999999999999999999988776654 7889999999999998 88999999999999995 333333
Q ss_pred ee---cCCCCeEEEEEcCCC----------CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 81 KK---VHMGPVKVMRYNPVF----------DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 81 ~~---~h~~~V~~l~~sp~~----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
.. .|...|.+++|+|++ .+|++++.|++|++||... .....+..|...|.++
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------~~~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---------------QIRYTFKAHESNVNHL 219 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---------------EEEEEEECCSSCEEEE
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---------------ceeEEEcCccccceEE
Confidence 33 788999999999987 7899999999999999532 3455677899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee----------ecc-
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK----------EIE- 215 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~----------e~~- 215 (513)
+|+|+|++|++++.|++|++||+.+ ......+.. ...+.++.+++...+.....+.+ +.+.. .+.
T Consensus 220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~~~la~~~d~~--v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-GSTINQIAFNPKLQWVAVGTDQG--VKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSCEEEEEECSSSCEEEEEESSC--EEEEESSSCCSCSEEECCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-CCcEEEEEECCCCCEEEEECCCC--EEEEEeCCCCCCceEEeec
Confidence 9999999999999999999999954 333333321 12245566666543322222211 11110 111
Q ss_pred ---------ccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCc
Q 010302 216 ---------KTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 216 ---------~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~ 251 (513)
......+..++|+|+|++|++++.+| |++|++.++.
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 01123456799999999999998776 9999998764
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=3.6e-26 Score=226.22 Aligned_cols=291 Identities=10% Similarity=0.083 Sum_probs=193.7
Q ss_pred CeEecCCCEE-EEEeC---CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCC---cceEEEEeCCCCeEEEEecCCC
Q 010302 1 MQVSVDGLLC-CSISN---DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDV---KAGLAISDRNSSFVHIYDARAD 73 (513)
Q Consensus 1 v~~s~dg~~l-as~s~---D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~---~~~~l~s~~~d~~I~iwd~~~~ 73 (513)
|+|+|++..+ ++++. |++|++||+.+++....... .|...+.++.|+++. . ++++++.|+.|++||+.
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~-- 98 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQR--YLATGDFGGNLHIWNLE-- 98 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTC--CEEEEETTSCEEEECTT--
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCc--eEEEecCCCeEEEEeCC--
Confidence 5799999655 55555 99999999998876555443 477899999999984 5 88899999999999997
Q ss_pred CCc-ceEEeecCCCCeEEEEE------cCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccC----Cc
Q 010302 74 SNE-PLISKKVHMGPVKVMRY------NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS----KT 142 (513)
Q Consensus 74 ~~~-~i~~~~~h~~~V~~l~~------sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 142 (513)
+++ ++..+.+|...|.++.| +|++++|++++.|+.|++||+++.+. .+..+..| ..
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-------------~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-------------PVANMEPVQGENKR 165 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-------------CSEEECCCTTSCCC
T ss_pred CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-------------cceeccccCCCCCC
Confidence 555 88889999999999955 68899999999999999999987431 23334333 33
Q ss_pred ceEEEE----EcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCC---CCccccccccccceeeeee---
Q 010302 143 TVSAIE----VSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD---APLYRLEAIDFGRRMAVEK--- 212 (513)
Q Consensus 143 ~v~~v~----~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~~~r~~~e~--- 212 (513)
.+.+++ |+|++++|++++.|+.|++||+++++.... ..+...+.++.+++ ...+.+.....+ .+.+..
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEeCcC
Confidence 788888 789999999999999999999999988554 34445566677776 333333222222 222111
Q ss_pred --ec---c----ccCCCCCCceEEcCCCC-EEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCccee
Q 010302 213 --EI---E----KTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVR 281 (513)
Q Consensus 213 --e~---~----~~~~~~~~~i~fd~~g~-~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~ 281 (513)
.+ . ......+..++|+|+|+ ++++++.++ |++||+.+++......... ... .. .+ ....+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g-~~~--~~---~~--~~~~~~ 315 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG-IEM--GV---AG--SVSLLQ 315 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS-CCC--CC---CC--EEEEEE
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC-Ccc--cc---cc--ccceee
Confidence 00 0 02334667899999999 788887765 9999998765443321111 000 00 00 000011
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 282 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 282 ~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+..+........|.+....|++||+.|++|++|.-..
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 11111111223334444455555999999999997654
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.3e-27 Score=236.35 Aligned_cols=208 Identities=11% Similarity=0.038 Sum_probs=158.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc-eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc---
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD-MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--- 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~-~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~--- 76 (513)
++|+|+|++||+++.|++|++||+.+++ ......+..|...+..+.|+|++. ++++++.|+.|++||++ ..+
T Consensus 61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~--~~~~~~ 136 (377)
T 3dwl_C 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFE--QENDWW 136 (377)
T ss_dssp EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-------CC
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEEC--Ccccce
Confidence 5799999999999999999999999876 334455667889999999999988 88899999999999997 444
Q ss_pred ceEEeec-CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCc----ceeeeecCCccccccccCCcceEEEEEcC
Q 010302 77 PLISKKV-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES----EVSFRLKSDTNLFEILKSKTTVSAIEVSP 151 (513)
Q Consensus 77 ~i~~~~~-h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 151 (513)
....+.. |...|.+++|+|++++|++++.|+.|++||++..+.... .+......++.+..+ .|...|.+++|+|
T Consensus 137 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp 215 (377)
T 3dwl_C 137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP 215 (377)
T ss_dssp CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT
T ss_pred eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC
Confidence 4677777 999999999999999999999999999999864332110 000011123445556 8999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeE----EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEE
Q 010302 152 DGKQFSITSPDRRIRVFWFRTGKL----RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIF 227 (513)
Q Consensus 152 dg~~l~s~s~D~~I~iwd~~tg~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~f 227 (513)
++++|++++.|+.|++||+.+++. +..+..| ...+..++|
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------------------~~~v~~~~~ 259 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS------------------------------------QLPLRSLLW 259 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS------------------------------------SSCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC------------------------------------CCceEEEEE
Confidence 999999999999999999998765 3322221 124567899
Q ss_pred cCCCCEEEEccccceEEEEccc
Q 010302 228 DESSNFLIYATLLGIKIVNLHT 249 (513)
Q Consensus 228 d~~g~~li~~s~~gi~v~d~~t 249 (513)
+++|++|++++.+++.+|+...
T Consensus 260 s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 260 ANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp EETTEEEEEESSSSEEEECCCC
T ss_pred cCCCCEEEEEcCCcEEEEEeCC
Confidence 9999999999999988998864
No 99
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.7e-27 Score=243.52 Aligned_cols=262 Identities=10% Similarity=0.044 Sum_probs=184.7
Q ss_pred CeEecC------CCEEEEEeCCCcEEEEEccCCcee---------EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeE
Q 010302 1 MQVSVD------GLLCCSISNDKSVKIYDVVNYDMM---------LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 1 v~~s~d------g~~las~s~D~~v~iwd~~~~~~~---------~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I 65 (513)
|+|+|+ +.+||+++.|++|+|||+.+++.. ....+..|...+.+++|+++ . .+++|+.|++|
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~--~lasgs~DgtV 289 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T--TVVCGFKNGFV 289 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S--EEEEEETTSEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C--eEEEEeCCCEE
Confidence 468886 689999999999999999876421 11245578889999999875 3 78999999999
Q ss_pred EEEecCCCCC-cceEEeecCCCCeEEE--EEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC
Q 010302 66 HIYDARADSN-EPLISKKVHMGPVKVM--RYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 141 (513)
Q Consensus 66 ~iwd~~~~~~-~~i~~~~~h~~~V~~l--~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (513)
++||++ ++ .+...+.+|...|.++ +|+|++ .+|+|++.|++|+|||+++. +.+..+.+|.
T Consensus 290 ~lWD~~--~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~--------------~~~~~~~~~~ 353 (524)
T 2j04_B 290 AEFDLT--DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI--------------ATTKTTVSRF 353 (524)
T ss_dssp EEEETT--BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH--------------HHHCEEEEEC
T ss_pred EEEECC--CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC--------------Cccccccccc
Confidence 999997 43 4566788999999999 578887 89999999999999999763 3344455554
Q ss_pred --cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 142 --TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 142 --~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
..|.+++|+|+++.+++++.|++|++||++++.++.++.+|.
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~------------------------------------ 397 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE------------------------------------ 397 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS------------------------------------
T ss_pred ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC------------------------------------
Confidence 247899999999999999999999999999988766665432
Q ss_pred CCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeC-CC--Cccchhheecc---------cc---CC---cCCcce
Q 010302 220 APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG-KV--ENNDRFLRIAL---------YQ---GD---RSSKKV 280 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g-~~--~~~~r~~~~~~---------~~---~~---~~~~~~ 280 (513)
..+.+++|+|+|++|++++.++ |++||+..+ ++.... .. ....+...+++ +. -. ......
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSK 476 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcce
Confidence 2356889999999999998776 999998643 111100 00 00011111111 00 00 011122
Q ss_pred eeeeccccccccCCCCCCC--CeEEEeeecCceEEEEecC
Q 010302 281 RKIPAAAANANESKEPFSD--PTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~d--~~l~~s~~~~~~i~i~~~~ 318 (513)
..+..+......+.|++.. +.++|+|+.++.|+||.-+
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 2333333336677787654 5699999999999999744
No 100
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=7.6e-26 Score=229.72 Aligned_cols=238 Identities=13% Similarity=0.021 Sum_probs=175.2
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|+++|++||+++.|+.|++||+.+++.... +..|...+.+++|+|++. ++++++.|+.|++||+. +++.+..+
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~--~~~~~~~~ 177 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVK--DGSNPRTL 177 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEE--TTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TCCCCEEE
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeee--cccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCC--CCcCceEE
Confidence 5789999999999999999999998766443 458999999999999988 89999999999999998 78889999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeec-------------CCccccccccCCcceEEEE
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK-------------SDTNLFEILKSKTTVSAIE 148 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~v~~v~ 148 (513)
.+|...|.+++|+|++++|++++.|++|++||+++.+.... +... ..........+...+.+++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT---FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE---ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE---eecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 99999999999999999999999999999999987543110 0000 0000001112345566677
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-cHHHHHHHhcCCCCc-cccccccccceeeeee---------ecccc
Q 010302 149 VSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE-SLEVAQDLQRSDAPL-YRLEAIDFGRRMAVEK---------EIEKT 217 (513)
Q Consensus 149 ~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~-~~~~i~~~~~~~~~~-~~l~~~~~~~r~~~e~---------e~~~~ 217 (513)
|+|++++|++++.|+.|++||+++++.+..+.. +...+.++.+++... +.+..... ..+.+.. .+..+
T Consensus 255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN-GMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp SSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT-SEEEEEETTCTTSCSEEEEES
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC-CeEEEEEcCCCcCchhhhhcc
Confidence 789999999999999999999999988777754 455677777777654 33322222 2222211 11112
Q ss_pred CCCCCCceEEcCCCCEEEEccccc-eEEEEcccC
Q 010302 218 ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 250 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~ 250 (513)
....+..+ +.+++++|++++.++ |++|++...
T Consensus 334 ~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 334 EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCceEE-EeCCCCEEEEecCCccEEEEeccCC
Confidence 23344445 445788999888765 999998763
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=2.1e-25 Score=225.67 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=181.9
Q ss_pred eEecCCCE-EEEEeCCCcEEEEEccCCcee--EEEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCC--
Q 010302 2 QVSVDGLL-CCSISNDKSVKIYDVVNYDMM--LMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSN-- 75 (513)
Q Consensus 2 ~~s~dg~~-las~s~D~~v~iwd~~~~~~~--~~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~-- 75 (513)
+++|+... +++++.||.|+||++.+.... ....+..|...|.++.|+| ++. ++++++.|+.|++||+. ++
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~--~~~~ 116 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP--DGGL 116 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC--TTCC
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc--CCCC
Confidence 45666543 445788999999999653221 1123457889999999999 666 89999999999999997 44
Q ss_pred -----cceEEeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc--ccCCcceEEE
Q 010302 76 -----EPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI--LKSKTTVSAI 147 (513)
Q Consensus 76 -----~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v 147 (513)
+++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++ ++.+..+ ..|...|.++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--------------GAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT--------------TEEEEEECTTTCCSCEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--------------CCccEEEecCCCCCceEEE
Confidence 6788899999999999999998 6999999999999999977 3445666 6799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-cccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
+|+|++++|++++.|+.|++||+++++.+..+ ..|. ......++
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~ 227 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----------------------------------GTRPVHAV 227 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----------------------------------SSSCCEEE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----------------------------------CCcceEEE
Confidence 99999999999999999999999999988776 3211 12356789
Q ss_pred EcCCCCEEEEc---cc-cceEEEEcccCcE-EEEe--CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCC
Q 010302 227 FDESSNFLIYA---TL-LGIKIVNLHTNKV-SRIL--GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD 299 (513)
Q Consensus 227 fd~~g~~li~~---s~-~gi~v~d~~t~~~-v~~~--g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 299 (513)
|+++|++|+++ +. ..|++||+.+++. +... .... . +..+.+ .+..
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~-----------------v~~~~~----------s~~~ 279 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS-G-----------------VLLPFF----------DPDT 279 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS-S-----------------CEEEEE----------ETTT
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCC-c-----------------eeEEEE----------cCCC
Confidence 99999999998 44 4599999988654 2222 1111 1 112222 2345
Q ss_pred CeEEEeeecCceEEEEecCC
Q 010302 300 PTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 300 ~~l~~s~~~~~~i~i~~~~~ 319 (513)
..|+++|..|+.|++|.-+.
T Consensus 280 ~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 280 NIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp TEEEEEETTCSCEEEEEECS
T ss_pred CEEEEEEcCCCeEEEEEecC
Confidence 56677888999999998664
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=5.5e-26 Score=227.21 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=156.8
Q ss_pred CeEecCCCEEEEEe--CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSIS--NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s--~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|||||++||+++ .|++|+|||+++++.+..+. |...|..++|+|++. ++++++.++ +.+|+.. +++.+
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~---~~~~V~~v~fspdg~--~l~s~s~~~-~~~~~~~--~~~~~ 210 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE---TRGEVKDLHFSTDGK--VVAYITGSS-LEVISTV--TGSCI 210 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSS--EEEEECSSC-EEEEETT--TCCEE
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC---CCCceEEEEEccCCc--eEEecccee-EEEEEec--cCcce
Confidence 57999999987654 78999999999998877765 667899999999998 888888665 5555554 44444
Q ss_pred E--EeecCCCCeEEEEEcCCCCEEEEEcCCC----cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 79 I--SKKVHMGPVKVMRYNPVFDTVISADDKG----IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 79 ~--~~~~h~~~V~~l~~sp~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
. ....|...|.+++|+|+++++++++.|+ .+++|++..... .......+..|...|++++||||
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~V~~~~~Spd 280 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------SVLRSKQVTNRFKGITSMDVDMK 280 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------EEEEEEEEESSCSCEEEEEECTT
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee----------cceeeeeecCCCCCeEeEEECCC
Confidence 3 3347889999999999999999999887 577887754221 01123456678899999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEe-cccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
|++||+|+.|++|+|||++++++++++ .+|. ..++.++|+|+|
T Consensus 281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~------------------------------------~~V~~v~fSpdg 324 (365)
T 4h5i_A 281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHS------------------------------------FAITEVTISPDS 324 (365)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEETTSSS------------------------------------SCEEEEEECTTS
T ss_pred CCceEEEcCCCEEEEEECCCCcEEEEecCccc------------------------------------CCEEEEEECCCC
Confidence 999999999999999999999998875 3332 245689999999
Q ss_pred CEEEEccccc-eEEEEcccC
Q 010302 232 NFLIYATLLG-IKIVNLHTN 250 (513)
Q Consensus 232 ~~li~~s~~g-i~v~d~~t~ 250 (513)
++|++++.++ |+||++.++
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 9999999876 999998644
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=2.8e-25 Score=227.29 Aligned_cols=279 Identities=10% Similarity=0.146 Sum_probs=187.6
Q ss_pred CeEecCC--CEEEEEeCCCcEEEEEccCCceeE--------------------------------------EEEcCCCCC
Q 010302 1 MQVSVDG--LLCCSISNDKSVKIYDVVNYDMML--------------------------------------MIRLPFIPG 40 (513)
Q Consensus 1 v~~s~dg--~~las~s~D~~v~iwd~~~~~~~~--------------------------------------~~~l~~~~~ 40 (513)
|+|+|++ .+|++++.|++|++||+.+++... ......|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 4799998 899999999999999997644311 011356888
Q ss_pred cEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-------EeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEe
Q 010302 41 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI-------SKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYW 112 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~-------~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iw 112 (513)
.+.+++|++++. +++++ .|+.|++||++. ..+.+. .+.+|...|.+++|+|++ ++|++++.|+.|++|
T Consensus 179 ~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 179 HINSISINSDYE--TYLSA-DDLRINLWHLEI-TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CCCEEEECTTSS--EEEEE-CSSEEEEEETTE-EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred ceEEEEEcCCCC--EEEEe-CCCeEEEEECCC-CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 999999999988 88888 799999999961 123333 245899999999999998 999999999999999
Q ss_pred cCCCCCCCCcceeeeecCCccccccccCC------------cceEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEe
Q 010302 113 SPHTLQFPESEVSFRLKSDTNLFEILKSK------------TTVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVY 179 (513)
Q Consensus 113 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t-g~~~~~~ 179 (513)
|+++.+... ..+..+..|. ..|.+++|+|+|++|++++. +.|++||+++ ++++..+
T Consensus 255 d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 255 DMRASALCD----------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp ETTTCSSSC----------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred ECcCCcccc----------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence 998855311 1133344444 48999999999999999998 9999999997 8877777
Q ss_pred cccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCC
Q 010302 180 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 180 ~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~ 258 (513)
..|......+... ...........++|+++|++|++++.++ |++||+.+++.+...+.
T Consensus 324 ~~~~~~~~~l~~~---------------------~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 382 (447)
T 3dw8_B 324 QVHEYLRSKLCSL---------------------YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEAS 382 (447)
T ss_dssp ESCGGGTTTHHHH---------------------HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred ecccccccccccc---------------------ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence 6654321111000 0000001223589999999999998776 99999999998866554
Q ss_pred CCccchhheec----ccc-CCcCCcceeeeeccccc-cccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 259 VENNDRFLRIA----LYQ-GDRSSKKVRKIPAAAAN-ANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 259 ~~~~~r~~~~~----~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.+ ..+..... +.. +...........+.-.. .....|+ +++.++|+|..+ .+|+|+.+
T Consensus 383 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-p~~~~la~~~~~-~~~~~~~~ 445 (447)
T 3dw8_B 383 RE-NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWH-PKENIIAVATTN-NLYIFQDK 445 (447)
T ss_dssp ST-TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEEC-SSSSEEEEECSS-CEEEEECC
T ss_pred cc-ccccccccCCccccccCCcccccccccccccCCceeEEEEC-CCCCEEEEEecc-eeeeeccc
Confidence 33 22211111 000 10000111110111011 3445676 555667777766 58999765
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=9.6e-26 Score=227.76 Aligned_cols=262 Identities=11% Similarity=0.030 Sum_probs=171.4
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEE---EcCCCCCcEEEEEEcC--------CCcceEEEEeCCCCeEEEEecC
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMI---RLPFIPGAVEWVYKQG--------DVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~---~l~~~~~~v~~v~~s~--------~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
+++++++||+++.|++|+|||+.+++..... .+.+|...|..++|+| +++ +++|++.|++|+|||++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLT 174 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECC
Confidence 4567889999999999999999988765432 3568999999999987 444 99999999999999997
Q ss_pred CCCCcceEEeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcc-----------eeeeecCCcccccccc
Q 010302 72 ADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESE-----------VSFRLKSDTNLFEILK 139 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 139 (513)
+..++..+..|..+|.+++|+|++ .+|++++.|++|++||+++.+..... +..+...........+
T Consensus 175 --~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 175 --DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp --TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred --CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 677777888899999999999987 47999999999999999876543221 1111111112223346
Q ss_pred CCcceEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccC
Q 010302 140 SKTTVSAIEVS-PDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE 218 (513)
Q Consensus 140 ~~~~v~~v~~s-pdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~ 218 (513)
|...+.++.|+ ||++.|++++.|+++++||+.+++....+..+...+......+. .+ .. ..
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~----------~~------~~--~~ 314 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN----------VQ------GI--SL 314 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS----------EE------EE--CS
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc----------cc------cc--cc
Confidence 88889999987 79999999999999999999999887777666554444433322 00 00 01
Q ss_pred CCCCCceEEc-C-CCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCC
Q 010302 219 TAPPSNAIFD-E-SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKE 295 (513)
Q Consensus 219 ~~~~~~i~fd-~-~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (513)
........|. + ++.+++.++.++ |++||..+++.+..+..+...++- +.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s-----------------vaf---------- 367 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD-----------------FCW---------- 367 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE-----------------EEE----------
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE-----------------EEE----------
Confidence 1112233343 3 344666777665 999999999887766444423222 222
Q ss_pred CCCCCeEEEeeecCceEEEE
Q 010302 296 PFSDPTLLCCAFKRHRIYLF 315 (513)
Q Consensus 296 ~~~d~~l~~s~~~~~~i~i~ 315 (513)
.+|+.++|+|++++. .+|
T Consensus 368 -spdG~~LA~as~~Gv-~lv 385 (393)
T 4gq1_A 368 -HQDGSHLAIATEGSV-LLT 385 (393)
T ss_dssp -CTTSSEEEEEESSEE-EEE
T ss_pred -cCCCCEEEEEeCCCe-EEE
Confidence 288899999998875 444
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=1.1e-25 Score=259.62 Aligned_cols=286 Identities=17% Similarity=0.163 Sum_probs=223.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|||+|++||+++.|++|++||+.+++.+..+. .|...+.++.|++++...++++++.|+.|++||+. +++++..
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~--~~~~~~~ 738 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN--QKECRNT 738 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT--SSSEEEE
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC--Ccchhhe
Confidence 5799999999999999999999999998877765 78899999999998777799999999999999998 8889999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCC---------------------------------------
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE--------------------------------------- 121 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~--------------------------------------- 121 (513)
+.+|...|.+++|+|+++++++++.||+|++||+.+.+...
T Consensus 739 ~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999999999986543210
Q ss_pred -cceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccc
Q 010302 122 -SEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 199 (513)
Q Consensus 122 -~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l 199 (513)
....|+...+..+..+. .|...+.+++|+|+++++++++.|+.|++||+.+++.+..+.+|...+.++.++++..+.+
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE
Confidence 01234444444444444 6888999999999999999999999999999999999999999988888888887654333
Q ss_pred ccccccceeeeee--------------------------------------------eccccCCCCCCceEEcCCCCEEE
Q 010302 200 EAIDFGRRMAVEK--------------------------------------------EIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 200 ~~~~~~~r~~~e~--------------------------------------------e~~~~~~~~~~~i~fd~~g~~li 235 (513)
.....+ .+.+.. .+..........++|+++|++++
T Consensus 899 s~s~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 899 TASDDQ-TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEETTS-CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEeCCC-eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 322221 111110 00011123456789999999999
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
+++.+| |++||+.+++.+..+..|...++.+.+ .+|+..+++++.|+.|++
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~----------------------------s~dg~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF----------------------------TADGKTLISSSEDSVIQV 1029 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEE----------------------------CSSSSCEEEECSSSBEEE
T ss_pred EEcCCCCEEEEEcCCCceeeecccCCCceEEEEE----------------------------CCCCCEEEEEcCCCEEEE
Confidence 998776 999999999988887665533332222 256667888888888888
Q ss_pred EecCC
Q 010302 315 FSRRE 319 (513)
Q Consensus 315 ~~~~~ 319 (513)
|+-..
T Consensus 1030 wd~~~ 1034 (1249)
T 3sfz_A 1030 WNWQT 1034 (1249)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 87554
No 106
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.3e-26 Score=229.74 Aligned_cols=199 Identities=13% Similarity=0.136 Sum_probs=167.4
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCc------eeEE-EEcCCCCCcEEEEEEcCC-CcceEEEEeCCCCeEEEEecC
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYD------MMLM-IRLPFIPGAVEWVYKQGD-VKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~------~~~~-~~l~~~~~~v~~v~~s~~-~~~~~l~s~~~d~~I~iwd~~ 71 (513)
++|+|+ +++|++++.|++|++||+.+++ .... .....|...+..+.|+++ +. ++++++.|+.|++||++
T Consensus 119 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH--VFASAGSSNFASIWDLK 196 (416)
T ss_dssp EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT--EEEEESSSSCEEEEETT
T ss_pred EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCc--EEEEEcCCCCEEEEECC
Confidence 479998 8999999999999999999876 2222 123467888999999998 45 88999999999999998
Q ss_pred CCCCcceEEeecC------CCCeEEEEEcCCC-CEEEEEcCCC---cEEEecCCCCCCCCcceeeeecCCccccccc-cC
Q 010302 72 ADSNEPLISKKVH------MGPVKVMRYNPVF-DTVISADDKG---IIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KS 140 (513)
Q Consensus 72 ~~~~~~i~~~~~h------~~~V~~l~~sp~~-~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 140 (513)
+++.+..+..| ...|.+++|+|++ .++++++.|+ .|++||+++.. ..+..+. .|
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------------~~~~~~~~~~ 261 (416)
T 2pm9_A 197 --AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-------------TPLQTLNQGH 261 (416)
T ss_dssp --TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------------SCSBCCCSCC
T ss_pred --CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------------CCcEEeecCc
Confidence 77888888766 7899999999987 6899999998 99999998732 3455666 79
Q ss_pred CcceEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 141 KTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 141 ~~~v~~v~~sp-dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
...|.+++|+| ++++|++++.|+.|++||+++++.+..+..|.
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~------------------------------------ 305 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG------------------------------------ 305 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS------------------------------------
T ss_pred cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC------------------------------------
Confidence 99999999999 99999999999999999999999888775422
Q ss_pred CCCCceEEcCCC-CEEEEccccc-eEEEEcccCcE
Q 010302 220 APPSNAIFDESS-NFLIYATLLG-IKIVNLHTNKV 252 (513)
Q Consensus 220 ~~~~~i~fd~~g-~~li~~s~~g-i~v~d~~t~~~ 252 (513)
..+..++|+|++ ++|++++.++ |++||+.+++.
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 245688999999 8999988776 99999987764
No 107
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=1.4e-25 Score=222.71 Aligned_cols=278 Identities=9% Similarity=0.077 Sum_probs=186.8
Q ss_pred CeEecC----CCEEEEEeCCCcEEEEEccCCceeEEEEc---CCCCCcEEEEEEcCCCc--ceEEEEeCCCCeEEEEecC
Q 010302 1 MQVSVD----GLLCCSISNDKSVKIYDVVNYDMMLMIRL---PFIPGAVEWVYKQGDVK--AGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 1 v~~s~d----g~~las~s~D~~v~iwd~~~~~~~~~~~l---~~~~~~v~~v~~s~~~~--~~~l~s~~~d~~I~iwd~~ 71 (513)
|+|+|+ ...+++++.++.|++||+.+++.+..+.. ..+...+..++|++++. ..++++++.|+.|++||+.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 478874 44555566667999999998776655442 23567899999999854 3489999999999999998
Q ss_pred CCCCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc---ccCCcceEEE
Q 010302 72 ADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI---LKSKTTVSAI 147 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v 147 (513)
+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+++. +.+..+ ..|...|.++
T Consensus 104 --~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 104 --TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD--------------TLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp --TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT--------------EEEEEECSTTSCSSCEEEE
T ss_pred --hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC--------------eEEEEecccccccCceeEE
Confidence 7888999999999999999999 9999999999999999999773 334444 6799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccc-cccccccceeeeeeeccccCCCCCCceE
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR-LEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
+|+|++++|++++.|+.|++||+++++.+..+.. .+.+++..... ....... .. ...........+..+.
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIH--FP-DFSTRDIHRNYVDCVR 238 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEEC--CC-SEEECSSCSSCCCEEE
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeec--cC-ccccccCCcceEEEEE
Confidence 9999999999999999999999988665332221 22222211100 0000000 00 0000111335677889
Q ss_pred EcCCCCEEEEccccc-eEEEEcccCcEEEEe-CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCC--CeE
Q 010302 227 FDESSNFLIYATLLG-IKIVNLHTNKVSRIL-GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD--PTL 302 (513)
Q Consensus 227 fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~-g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~l 302 (513)
|+ +++|++++.++ |++||+.+++..... ..+.... ..+. .+..+........+. ++ +.+
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~v~~~~~s-~~~~~~~ 301 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV--TILG------------RFDYSQCDIWYMRFS-MDFWQKM 301 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE--EEEE------------EEECSSCCSSCCCCE-ECTTSSE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcch--heec------------cccccCCcEEEEEEc-CCCCCcE
Confidence 98 77888887665 999999876541100 0000000 0011 111111111122222 44 889
Q ss_pred EEeeecCceEEEEecCCC
Q 010302 303 LCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 303 ~~s~~~~~~i~i~~~~~~ 320 (513)
+++|+.++.|++|..+..
T Consensus 302 l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEECTTSCEEEEECCSS
T ss_pred EEEEecCCcEEEEECCCC
Confidence 999999999999987653
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-25 Score=244.06 Aligned_cols=247 Identities=13% Similarity=0.128 Sum_probs=190.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc--ce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--PL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~--~i 78 (513)
++|+|+|++||+|+.||+|+|||+.+........+..|...|.++.|+++....++++++.|+.|++||+. +++ .+
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~--~~~~~~~ 92 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--NGRWSQI 92 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE--TTEEEEE
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC--CCccccc
Confidence 47899999999999999999999986555555566789999999999988322399999999999999998 444 77
Q ss_pred EEeecCCCCeEEEEEcCC--CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-----
Q 010302 79 ISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP----- 151 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp----- 151 (513)
..+..|...|.+++|+|+ ++++++++.||.|++||+++... .....+..|...|.+++|+|
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------------~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------TSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC------------CCCEEEECCSSCEEEEEECCCC---
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC------------cceeEeecCCCceEEEEecCccccc
Confidence 778899999999999999 99999999999999999977432 23345567899999999999
Q ss_pred --------CCCEEEEEeCCCcEEEEEcCCC----eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 152 --------DGKQFSITSPDRRIRVFWFRTG----KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 152 --------dg~~l~s~s~D~~I~iwd~~tg----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
++++|++++.|+.|++||++++ .+...+.+| .
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h------------------------------------~ 204 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH------------------------------------S 204 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC------------------------------------S
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC------------------------------------C
Confidence 5899999999999999999886 333333321 1
Q ss_pred CCCCceEEcCC---CCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCC
Q 010302 220 APPSNAIFDES---SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKE 295 (513)
Q Consensus 220 ~~~~~i~fd~~---g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (513)
..+..++|+|+ |++|++++.++ |++||+.+++..... ..+........+..+.+
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~------------~~~~~~~~~~~v~~l~~---------- 262 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK------------TLLKEEKFPDVLWRASW---------- 262 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC------------CBSSSSCCSSCCCCEEE----------
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee------------EEeccCCCCCceEEEEE----------
Confidence 34568899999 89999998776 999999876411000 00000011112222222
Q ss_pred CCCCCeEEEeeecCceEEEEecCCC
Q 010302 296 PFSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 296 ~~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
.+++.++++|+.|+.|++|.-+..
T Consensus 263 -spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 263 -SLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp -CTTTCCEEEECSSSCEECCBCCSS
T ss_pred -cCCCCEEEEEcCCCEEEEEecCCC
Confidence 267788999999999999986643
No 109
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=1.6e-25 Score=219.51 Aligned_cols=273 Identities=11% Similarity=0.045 Sum_probs=200.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC-CcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-NEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-~~~i~ 79 (513)
++|||||++++++..++.+.+|+..... ..+....|...+..++|++++. ++++++ |+.|++||+.... ...+.
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCSEE--EEEEEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred EEECCCCCEEEeecCCCcEeccccCCcc--ccceeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCCCCceeeee
Confidence 4799999999998877777676554322 2233336889999999999988 888888 9999999997221 12344
Q ss_pred Eee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 80 SKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 ~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
.+. .|...|.+++|+|++++|++++.|+.|++||+.+.+ ......+..|...+.+++|+|++++|+
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT------------PRIKAELTSSAPACYALAISPDSKVCF 157 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC------------cceeeecccCCCceEEEEECCCCCEEE
Confidence 444 799999999999999999999999999999997743 123456667889999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----ec-cccCCCCCCceEEcCCC
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EI-EKTETAPPSNAIFDESS 231 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~-~~~~~~~~~~i~fd~~g 231 (513)
+++.|+.|++||+++++.+..+..|...+.++.++++..+.+.....+. +.+.. .+ ..........++|+++|
T Consensus 158 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236 (337)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEEECTTS
T ss_pred EEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeecCCCceEEEEECCCC
Confidence 9999999999999999999999888777777777766433332222121 11110 00 01123456788999999
Q ss_pred CEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCc
Q 010302 232 NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH 310 (513)
Q Consensus 232 ~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~ 310 (513)
++|++++.++ |++||+.+++.....+... . +..+.+ .+|+.++++++.++
T Consensus 237 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~-----------------v~~~~~-----------~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 237 EWLAVGMESSNVEVLHVNKPDKYQLHLHES-C-----------------VLSLKF-----------AYCGKWFVSTGKDN 287 (337)
T ss_dssp SEEEEEETTSCEEEEETTSSCEEEECCCSS-C-----------------EEEEEE-----------CTTSSEEEEEETTS
T ss_pred CEEEEEcCCCcEEEEECCCCCeEEEcCCcc-c-----------------eeEEEE-----------CCCCCEEEEecCCC
Confidence 9999887655 9999999887654433222 2 222222 26777899999999
Q ss_pred eEEEEecCCC
Q 010302 311 RIYLFSRREP 320 (513)
Q Consensus 311 ~i~i~~~~~~ 320 (513)
.+++|..+..
T Consensus 288 ~i~~~~~~~~ 297 (337)
T 1gxr_A 288 LLNAWRTPYG 297 (337)
T ss_dssp EEEEEETTTC
T ss_pred cEEEEECCCC
Confidence 9999986643
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=7.3e-25 Score=223.97 Aligned_cols=242 Identities=10% Similarity=0.101 Sum_probs=182.7
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccC----------CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVN----------YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~----------~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd 69 (513)
++|+|+ +++||+++.|+.|++||+.+ ...... +..|...+.+++|++++.. ++++++.|+.|++||
T Consensus 134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~-~l~s~~~dg~i~vwd 210 (430)
T 2xyi_A 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR--LRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWD 210 (430)
T ss_dssp EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE--EECCSSCCCCEEECTTSTT-EEEEECTTSCEEEEE
T ss_pred EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE--ecCCCCCeEEEEeCCCCCC-eEEEEeCCCeEEEEe
Confidence 478997 78999999999999999986 344444 4478889999999998765 788899999999999
Q ss_pred cCCCCC-----cceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 70 ARADSN-----EPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 70 ~~~~~~-----~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
+..... .....+.+|...|.+++|+| ++.+|++++.|+.|++||+++... ...+..+..|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-----------SKPSHTVDAHTAE 279 (430)
T ss_dssp TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-----------SSCSEEEECCSSC
T ss_pred CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-----------CcceeEeecCCCC
Confidence 973111 12456679999999999999 788999999999999999987431 2345566689999
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCC
Q 010302 144 VSAIEVSPDGK-QFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 221 (513)
Q Consensus 144 v~~v~~spdg~-~l~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~ 221 (513)
|.+++|+|+++ +|++++.|+.|++||+++ ++.+..+..| ...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h------------------------------------~~~ 323 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH------------------------------------KDE 323 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC------------------------------------SSC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC------------------------------------CCC
Confidence 99999999997 688999999999999987 4444444321 124
Q ss_pred CCceEEcCCCC-EEEEcccc-ceEEEEcccC--------------cEEEEeCCCCccchhheeccccCCcCCcceeeeec
Q 010302 222 PSNAIFDESSN-FLIYATLL-GIKIVNLHTN--------------KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 285 (513)
Q Consensus 222 ~~~i~fd~~g~-~li~~s~~-gi~v~d~~t~--------------~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 285 (513)
+..+.|+|+++ +|++++.+ .|++||+.+. +++....++...+ .
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----------------~---- 382 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI-----------------S---- 382 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE-----------------E----
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc-----------------e----
Confidence 56789999996 46666655 5999999872 4444443333111 1
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 286 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 286 ~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
...|++..+.++++++.++.|+||....
T Consensus 383 ------~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 383 ------DFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp ------EEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ------EEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 2233345555899999999999997653
No 111
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=3.5e-25 Score=222.53 Aligned_cols=202 Identities=13% Similarity=0.099 Sum_probs=163.4
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCceeEEEEc---CCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDMMLMIRL---PFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~~~~~~l---~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
++|+|+ +.+|++|+.|++|++||+.+++.+..+.. ..|...+..+.+.+ ++. ++++++.|++|++||++. ..
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~sgs~D~~v~~wd~~~-~~ 239 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSCDTTVRLWDLRI-TS 239 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC--EEEEEETTSCEEEEETTT-TC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC--EEEEEECCCeEEEEECCC-CC
Confidence 356776 46799999999999999999988776632 35777899999976 555 899999999999999962 34
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-------cCCcceEEEE
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-------KSKTTVSAIE 148 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~v~ 148 (513)
+++..+.+|...|.+++|+|++++|++++.|++|++||+++++. +..+. .+...|.+++
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ--------------LQVYNREPDRNDNELPIVTSVA 305 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE--------------EEEECCCCSSSCCSSCSCSEEE
T ss_pred cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE--------------EEEecccccccccccCceEEEE
Confidence 67888899999999999999999999999999999999987432 22222 1234589999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEc
Q 010302 149 VSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 228 (513)
Q Consensus 149 ~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd 228 (513)
|+|+|++|++|+.|+.|++||..+++.+..+... .......+.+++|+
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--------------------------------~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL--------------------------------QNSHEGRISCLGLS 353 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS--------------------------------CSSCCCCCCEEEEC
T ss_pred ECCCCCEEEEEECCCCEEEEECCCCceEEEEecc--------------------------------cCCCCCceEEEEEC
Confidence 9999999999999999999999999887765310 00112356789999
Q ss_pred CCCCEEEEccccc-eEEEEcccCc
Q 010302 229 ESSNFLIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 229 ~~g~~li~~s~~g-i~v~d~~t~~ 251 (513)
|+|++|++++.++ |++|++...+
T Consensus 354 ~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 354 SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999998776 9999997654
No 112
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=5e-25 Score=213.64 Aligned_cols=204 Identities=13% Similarity=0.082 Sum_probs=157.6
Q ss_pred CeEec--CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSV--DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~--dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|++ +|++||||+.|++|+|||+.+++......+..|...+.+++|+|+....++++++.|++|++||++.......
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 46776 4899999999999999999987544444456788999999999973223899999999999999973222234
Q ss_pred EEeecCCCCeEEEEEcCC-------------CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceE
Q 010302 79 ISKKVHMGPVKVMRYNPV-------------FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 145 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~-------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (513)
..+.+|...|.+++|+|+ +++|++++.|++|++||+++.+. .......+.+|...|.
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~----------~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDWVR 208 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSCEE
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc----------eEEEEEEecCCCCceE
Confidence 667799999999999997 57999999999999999866321 0113456778999999
Q ss_pred EEEEcCCC---CEEEEEeCCCcEEEEEcCCCe--EE-EEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 146 AIEVSPDG---KQFSITSPDRRIRVFWFRTGK--LR-RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 146 ~v~~spdg---~~l~s~s~D~~I~iwd~~tg~--~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
+++|+|++ ++|++++.|++|++||++++. .. ..+.. ....
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~----------------------------------~~~~ 254 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKE----------------------------------EKFP 254 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS----------------------------------SCCS
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeec----------------------------------ccCC
Confidence 99999995 899999999999999987642 11 11100 0011
Q ss_pred CCCCceEEcCCCCEEEEccccc-eEEEEcc
Q 010302 220 APPSNAIFDESSNFLIYATLLG-IKIVNLH 248 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~~g-i~v~d~~ 248 (513)
..+..++|+|+|++|++++.++ |++|+..
T Consensus 255 ~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 255 DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 2345789999999999988776 9999986
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1.6e-25 Score=226.57 Aligned_cols=197 Identities=11% Similarity=0.126 Sum_probs=162.1
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCC-------ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNY-------DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~-------~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
++|+| ++++||+|+.|++|+|||+.++ +.... +..|...+..+.|+|++.. ++++++.|+.|++||++
T Consensus 87 ~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~- 162 (402)
T 2aq5_A 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT--LEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVG- 162 (402)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEE--EECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETT-
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEE--ecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECC-
Confidence 57999 9999999999999999999987 33444 4478899999999999732 88899999999999998
Q ss_pred CCCcceEEe--ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcc-eEEEE
Q 010302 73 DSNEPLISK--KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTT-VSAIE 148 (513)
Q Consensus 73 ~~~~~i~~~--~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~v~ 148 (513)
+++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++ ++.+..+ ..|.+. +.+++
T Consensus 163 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 163 -TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK--------------GTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp -TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT--------------TEEEEEEECSSCSSSCCEEE
T ss_pred -CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC--------------CceeeeeccCCCCCcceEEE
Confidence 78888888 78999999999999999999999999999999987 3445555 567665 89999
Q ss_pred EcCCCCEEEEE---eCCCcEEEEEcCCCeE-EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCc
Q 010302 149 VSPDGKQFSIT---SPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSN 224 (513)
Q Consensus 149 ~spdg~~l~s~---s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~ 224 (513)
|+|++++|+++ +.|+.|++||+++++. +.... ......+..
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-----------------------------------~~~~~~v~~ 272 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-----------------------------------LDTSSGVLL 272 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-----------------------------------CCCCSSCEE
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-----------------------------------ccCCCceeE
Confidence 99999999999 7899999999987653 11110 011124567
Q ss_pred eEEcCCCCEEEE-cccc-ceEEEEcccCc
Q 010302 225 AIFDESSNFLIY-ATLL-GIKIVNLHTNK 251 (513)
Q Consensus 225 i~fd~~g~~li~-~s~~-gi~v~d~~t~~ 251 (513)
++|+++|++|+. ++.+ .|++||+.+++
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 899999999964 5434 59999999887
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=219.76 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=157.1
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEc-----------CCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEE
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRL-----------PFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHI 67 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l-----------~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~i 67 (513)
++|+| +|++||+++.|++|++||+.+++....+.. ..|...+..+.|++ ++. ++++++.|+.|++
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~i 126 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKV 126 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEE
Confidence 57999 999999999999999999998765444332 24788999999999 555 7888899999999
Q ss_pred EecCCCCCcceEEeecCCCCeEEEEEcCC---CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 68 YDARADSNEPLISKKVHMGPVKVMRYNPV---FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h~~~V~~l~~sp~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
||+. +++.+..+. +...+.++.|+|. +.++++++.|+.|++||+++ +..+..+..|...|
T Consensus 127 wd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~v 189 (408)
T 4a11_B 127 WDTN--TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--------------GSCSHILQGHRQEI 189 (408)
T ss_dssp EETT--TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--------------SCCCEEECCCCSCE
T ss_pred eeCC--CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--------------cceeeeecCCCCcE
Confidence 9998 777777765 7788999999984 45999999999999999977 34466777899999
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEEcCCCe-EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 145 SAIEVSPDGK-QFSITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 145 ~~v~~spdg~-~l~s~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
.+++|+|+++ .|++++.|+.|++||+++++ .+..++.+... ....+ . .........+
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~-----------~-~~~~~~~~~v 248 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---------KSQAV-----------E-SANTAHNGKV 248 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---------SCCCT-----------T-TSSCSCSSCE
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---------cceee-----------c-cccccccCce
Confidence 9999999998 58899999999999998865 44444321100 00000 0 0001112345
Q ss_pred CceEEcCCCCEEEEccccc-eEEEEcccC
Q 010302 223 SNAIFDESSNFLIYATLLG-IKIVNLHTN 250 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s~~g-i~v~d~~t~ 250 (513)
..++|+++|++|++++.++ |++||+.++
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 5677777777777776554 777776653
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=3.8e-24 Score=213.78 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=177.3
Q ss_pred eEecCCCEEEEEe-----------CCCcEEEEEccCCceeEE----EEc---CCCCCcEEEEEEcCCCcceEEEEeCCCC
Q 010302 2 QVSVDGLLCCSIS-----------NDKSVKIYDVVNYDMMLM----IRL---PFIPGAVEWVYKQGDVKAGLAISDRNSS 63 (513)
Q Consensus 2 ~~s~dg~~las~s-----------~D~~v~iwd~~~~~~~~~----~~l---~~~~~~v~~v~~s~~~~~~~l~s~~~d~ 63 (513)
+++++++.+++++ .|+++|+|++.+.+.... ..+ ..+...+..++|+|+++.+.+++++.|+
T Consensus 78 s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 78 AIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp EEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred EEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence 5677888887764 478899999876542211 111 1223457889999999976677888999
Q ss_pred eEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 64 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 64 ~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
+|+|||++ +++++..+. |...|.+++|+|+|+++++++.++ +.+|+..+++. ........|...
T Consensus 158 ~i~iwd~~--~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~------------~~~~~~~~~~~~ 221 (365)
T 4h5i_A 158 IMRIIDPS--DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC------------IARKTDFDKNWS 221 (365)
T ss_dssp EEEEEETT--TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE------------EEEECCCCTTEE
T ss_pred EEEEeECC--CCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcc------------eeeeecCCCCCC
Confidence 99999998 888888875 778899999999999999999665 55555544221 112234468888
Q ss_pred eEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 144 VSAIEVSPDGKQFSITSPDR----RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 144 v~~v~~spdg~~l~s~s~D~----~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
|.+++|+|+++++++++.|+ .+++|++..+........ .+ ....
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-------------------------------~~-~~~~ 269 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK-------------------------------QV-TNRF 269 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE-------------------------------EE-ESSC
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee-------------------------------ee-cCCC
Confidence 99999999999999999877 688899877654221100 00 0112
Q ss_pred CCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEe-CCCCccchhheeccccCCcCCcceeeeeccccccccCCCCC
Q 010302 220 APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL-GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPF 297 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~-g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (513)
..+.+++|+|+|++|++++.++ |+|||+.++++++.+ .+|...+..+ .+ .
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v-----------------~f-----------S 321 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV-----------------TI-----------S 321 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE-----------------EE-----------C
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE-----------------EE-----------C
Confidence 3456889999999999998876 999999999999875 5555333322 22 2
Q ss_pred CCCeEEEeeecCceEEEEecCC
Q 010302 298 SDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 298 ~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+|+.+++||+.|+.|+||.-.+
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCT
T ss_pred CCCCEEEEEeCCCeEEEEEcCC
Confidence 8999999999999999997643
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-25 Score=221.19 Aligned_cols=234 Identities=11% Similarity=0.082 Sum_probs=171.3
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC-------CCC
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA-------DSN 75 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~-------~~~ 75 (513)
+.+++++||+|+.|++|++||+.+++.+..+. ...+..+.++|. +++++.|++|++|+... .+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc-----eEEecCCCeEEEEEccCceEEeecCCc
Confidence 45688999999999999999999998877765 234445555554 88999999999997641 133
Q ss_pred cceEEee-cCCCCeEEEEEcC--CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcC
Q 010302 76 EPLISKK-VHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSP 151 (513)
Q Consensus 76 ~~i~~~~-~h~~~V~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp 151 (513)
+.+..+. .|..+|.+++|+| +++++++++.|++|++||+++++ .+... ..|...+.+++|+|
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--------------~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS--------------QYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC--------------EEEEECCCSSCCCCEEEECT
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc--------------EEEEEecCCCCceEEEEECC
Confidence 4344444 7778999999999 99999999999999999997743 23333 23556799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEE-EEecc-cHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 152 DGKQFSITSPDRRIRVFWFRTGKLR-RVYDE-SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 152 dg~~l~s~s~D~~I~iwd~~tg~~~-~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
+|++|++|+.|+.|++||+++++.+ ..+.. | ...+..++|+|
T Consensus 181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h------------------------------------~~~v~~l~fs~ 224 (343)
T 3lrv_A 181 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDE------------------------------------EAKIKEVKFAD 224 (343)
T ss_dssp TSCEEEEECTTSCEEEEESSCTTSCCEECCCCT------------------------------------TSCEEEEEECT
T ss_pred CCCEEEEEcCCCEEEEEECCCCCCCccEEeccC------------------------------------CCCEEEEEEeC
Confidence 9999999999999999999998765 44432 1 13456889999
Q ss_pred CCCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeec-
Q 010302 230 SSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFK- 308 (513)
Q Consensus 230 ~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~- 308 (513)
+|++|++++.+.|++||+.+++.+..+...+... ..+. ...+.+ .+++.++++++.
T Consensus 225 ~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~-----------~~~g~~l~~~s~~ 281 (343)
T 3lrv_A 225 NGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPE--FKTG----------TVTYDI-----------DDSGKNMIAYSNE 281 (343)
T ss_dssp TSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-------C----------CEEEEE-----------CTTSSEEEEEETT
T ss_pred CCCEEEEEeCCeEEEEEcCCCCcceeeccccccc--cccc----------ceEEEE-----------CCCCCEEEEecCC
Confidence 9999999998789999999887655443211000 0000 011222 256667777776
Q ss_pred CceEEEEecC
Q 010302 309 RHRIYLFSRR 318 (513)
Q Consensus 309 ~~~i~i~~~~ 318 (513)
++.+.+|.-.
T Consensus 282 d~~i~v~~~~ 291 (343)
T 3lrv_A 282 SNSLTIYKFD 291 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCcEEEEEEc
Confidence 8899999654
No 117
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.93 E-value=2.8e-24 Score=228.82 Aligned_cols=237 Identities=11% Similarity=0.046 Sum_probs=193.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC----ceeEEEEcCCCCCc-EEEEEEcC--CCcceEEEEeCCCCeEEEEecCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY----DMMLMIRLPFIPGA-VEWVYKQG--DVKAGLAISDRNSSFVHIYDARAD 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~----~~~~~~~l~~~~~~-v~~v~~s~--~~~~~~l~s~~~d~~I~iwd~~~~ 73 (513)
++|||||++||+++ |+.|++||+.++ +....+ ..|... +.+++|+| +++ ++++++.|+.|++||+..+
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~--~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF--TGHGSSVVTTVKFSPIKGSQ--YLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE--CTTTTSCEEEEEECSSTTCC--EEEEEETTSEEEEEEEEEE
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEE--ecCCCceEEEEEECcCCCCC--EEEEecCCCEEEEEeCCCC
Confidence 68999999999998 889999999987 665554 488899 99999999 888 8999999999999999622
Q ss_pred ------CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 74 ------SNEPLISKKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 74 ------~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
..+.+..+..|..+|.+++|+|++++|++++.+ +.|.+||. ++.+..+..|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~----------------~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS----------------GNSLGEVSGHSQR 162 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT----------------CCEEEECCSCSSC
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC----------------CCcceeeecCCcc
Confidence 236677788999999999999999999999988 78999984 3456677789999
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 144 VSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 144 v~~v~~spdg~-~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
|.+++|+|+++ .+++++.|+.|++||+.+++++..+..|.. ....+
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------------------------------~~~~v 209 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK---------------------------------QGSFV 209 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC---------------------------------TTCCE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC---------------------------------CCceE
Confidence 99999999998 899999999999999999999887764321 00135
Q ss_pred CceEEcCC-CCEEEEccccc-eEEEEcccCcEEEEe-C---CCCccchhheeccccCCcCCcceeeeeccccccccCCCC
Q 010302 223 SNAIFDES-SNFLIYATLLG-IKIVNLHTNKVSRIL-G---KVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEP 296 (513)
Q Consensus 223 ~~i~fd~~-g~~li~~s~~g-i~v~d~~t~~~v~~~-g---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (513)
..++|+|+ |++|++++.++ |++||+.+++.+..+ . .+...+. .+. +
T Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~-----------------~~~----------~- 261 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF-----------------ALS----------W- 261 (615)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE-----------------EEE----------E-
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceE-----------------EEE----------E-
Confidence 67899999 99999988665 999999999999888 2 3331211 111 1
Q ss_pred CCCCeEEEeeecCceEEEEecCCC
Q 010302 297 FSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 297 ~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
. ++.++++++.++.|++|..+..
T Consensus 262 ~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 262 L-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp S-SSSEEEEEETTSEEEEEETTTT
T ss_pred c-CCCEEEEEcCCCcEEEEECCCC
Confidence 2 5678999999999999987643
No 118
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.1e-25 Score=244.83 Aligned_cols=277 Identities=14% Similarity=0.113 Sum_probs=189.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCcee----EEEEcC-----CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMM----LMIRLP-----FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~----~~~~l~-----~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
|+|+|||++||||+.|++|++||+.++... ....+. .|...+.+++|+|++. ++++++.|++|+|||+.
T Consensus 441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~--~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL--ELAVSIETGDVVLFKYE 518 (902)
T ss_dssp CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT--EEEEEETTSCEEEEEEE
T ss_pred ccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC--eEEEEecCcEEEEEEec
Confidence 478999999999999999999999887532 111222 6778999999999999 99999999999999986
Q ss_pred CCC-------------------------------------------CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCc
Q 010302 72 ADS-------------------------------------------NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI 108 (513)
Q Consensus 72 ~~~-------------------------------------------~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~ 108 (513)
... .+++..+.+|...|++++|+|+| +|++|+.|++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t 597 (902)
T 2oaj_A 519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS 597 (902)
T ss_dssp ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSE
T ss_pred CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc
Confidence 221 02467788999999999999999 9999999999
Q ss_pred EEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEc-----CCC---CEEEEEeCCCcEEEEEc---CCCeEE
Q 010302 109 IEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVS-----PDG---KQFSITSPDRRIRVFWF---RTGKLR 176 (513)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s-----pdg---~~l~s~s~D~~I~iwd~---~tg~~~ 176 (513)
|++||+++... .+. ..+..+. +|..+|++++|| ||| ++|++++.|++|++||+ .+|++.
T Consensus 598 v~lwd~~~~~~-----~~~----~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 598 LMLIDRRGPAI-----IYM----ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp EEEEETTTTEE-----EEE----EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred EEEEECCCCeE-----EEE----eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence 99999866321 000 1123454 899999999999 886 89999999999999999 889998
Q ss_pred EEecccHHHHHHHhcCCCCcccccccc--ccceeeee--eeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcE
Q 010302 177 RVYDESLEVAQDLQRSDAPLYRLEAID--FGRRMAVE--KEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKV 252 (513)
Q Consensus 177 ~~~~~~~~~i~~~~~~~~~~~~l~~~~--~~~r~~~e--~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~ 252 (513)
.++.++... ....+++.+...+ .+. .+.. ..+.... -...++|..|+++ ...||+|++.++++
T Consensus 669 ~~~~~~~~~-----~~~~~v~~i~~~~~~~~~-~~~a~~~~~~~l~------~~~~~~~~~l~~~-~~~ir~~~~~~~k~ 735 (902)
T 2oaj_A 669 VQLMDITNV-----TSKGPIHKIDAFSKETKS-SCLATIPKMQNLS------KGLCIPGIVLITG-FDDIRLITLGKSKS 735 (902)
T ss_dssp EEEEEEEEC-----CSSCCCCEEEEEETTTCC-BCBCBHHHHHGGG------GTCCCCEEEEEEC-SSEEEEECTTCCCE
T ss_pred EEecCceec-----CCCCceEEEEeEecCCCC-cccCCHHHHhccC------CCCCCCeEEEEEe-ccceEEEeCccccc
Confidence 888775421 0112222221111 000 0000 0000000 0022466555555 77899999999999
Q ss_pred EEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 010302 253 SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 321 (513)
Q Consensus 253 v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~ 321 (513)
+++.-.+. .....++.+ +|. ..+....++..++++++++.|.+|+-.+-+
T Consensus 736 ~~k~~~~~--~~~~~v~~~------------~~~-----~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~ 785 (902)
T 2oaj_A 736 THKGFKYP--LAATGLSYI------------STV-----EKNNDRKNLTVIITLEINGHLRVFTIPDFK 785 (902)
T ss_dssp EEEECSSC--EEEEEEEEE------------EEE-----CSSSCEEEEEEEEEEETTSEEEEEETTTCC
T ss_pred eeeEcccc--eeeeEEEEE------------Eec-----cccccccCceEEEEEeCCCcEEEEECcchH
Confidence 97763322 111111000 100 001113567889999999999999876544
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.9e-25 Score=225.62 Aligned_cols=232 Identities=13% Similarity=0.077 Sum_probs=168.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCcee-----------------------------EEEEcCCCCCcEEEEEEcCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMM-----------------------------LMIRLPFIPGAVEWVYKQGDV 51 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~-----------------------------~~~~l~~~~~~v~~v~~s~~~ 51 (513)
|+|||||+++||++.|++|+ |...++.+ ..+.+ .+...|..++|+|++
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG 97 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVCKPSPID 97 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSS
T ss_pred EEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEEEECCCC
Confidence 58999999999999999996 44333211 11111 235679999999999
Q ss_pred cceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC-----CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceee
Q 010302 52 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG-----PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 126 (513)
Q Consensus 52 ~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~-----~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 126 (513)
. .+++++.|+.|++||.+ . ++..+. |.. .|.+++|||+|++|++|+.||+|++||+.++.+....
T Consensus 98 ~--~LAs~s~dg~V~iwd~~--~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~--- 167 (588)
T 2j04_A 98 D--WMAVLSNNGNVSVFKDN--K--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE--- 167 (588)
T ss_dssp S--CEEEEETTSCEEEEETT--E--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC---
T ss_pred C--EEEEEeCCCcEEEEeCC--c--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc---
Confidence 9 89999999999999964 2 666676 665 4999999999999999999999999999774320000
Q ss_pred eecCCcccccc----ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---EEEecccHHHHHHHhcCCCCcccc
Q 010302 127 RLKSDTNLFEI----LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRL 199 (513)
Q Consensus 127 ~~~~~~~~~~~----~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~l 199 (513)
--.+..+ .+|..+|.+++||||| +++++.|++|++||+.+++. .+++..
T Consensus 168 ----~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~------------------ 223 (588)
T 2j04_A 168 ----FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN------------------ 223 (588)
T ss_dssp ----CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC------------------
T ss_pred ----ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc------------------
Confidence 0013343 5688899999999999 88889999999999987663 223311
Q ss_pred ccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcE-EEEeCCCCccchhheeccccCCcCCc
Q 010302 200 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKV-SRILGKVENNDRFLRIALYQGDRSSK 278 (513)
Q Consensus 200 ~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~-v~~~g~~~~~~r~~~~~~~~~~~~~~ 278 (513)
.....+..++|+ |+.|++++...|++||+.+++. ....|... .+. .+++.+
T Consensus 224 -----------------~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~-~V~--~va~~~------ 275 (588)
T 2j04_A 224 -----------------ASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLE-NFH--IIPLNH------ 275 (588)
T ss_dssp -----------------CCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCS-CCC--EEEETT------
T ss_pred -----------------cccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCc-eEE--EEEeee------
Confidence 111356788998 6899988887899999999988 44545322 222 222212
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 279 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
.+|...+++|++++. .+|.
T Consensus 276 ------------------s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 276 ------------------EKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp ------------------CSSCEEEEECSSCEE-EEEE
T ss_pred ------------------CCCCCEEEEEcCCCC-EEEe
Confidence 256667777777777 6664
No 120
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=7.2e-25 Score=237.82 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=175.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|||+|++|+||+.|++|+|||+.++.....+. .|...|.+++|++++. .+++++.|++|++||.. ......
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~---~~~~~~ 508 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTL---GECKYT 508 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECTTSS--CEEEEETTSCEEEECTT---SCEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe--CCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECC---CCccee
Confidence 4799999999999999999999999988766654 8899999999999988 88999999999999985 233333
Q ss_pred e----ecCCCCeEEEEEcCCC--CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 81 K----KVHMGPVKVMRYNPVF--DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 81 ~----~~h~~~V~~l~~sp~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
+ .+|...|.+++|+|++ ..+++++.|++|++||+++ ......+.+|.+.|.+++|+|+++
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~--------------~~~~~~~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--------------CKLRSTLAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--------------CcEEEEEcCCCCCEEEEEEeCCCC
Confidence 3 3788999999999986 6899999999999999977 344667788999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeee--------eecccc---------
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE--------KEIEKT--------- 217 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e--------~e~~~~--------- 217 (513)
+|++++.|++|++||+++++.+..+..+ ..+..+.++++..+.....+.+ +.+. ..+...
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATEHG--IKIWDLESKSIVEDLKVDLKAEAEKAD 651 (694)
T ss_dssp EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEETTE--EEEEETTTTEEEEEECCCCC-------
T ss_pred EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEcCCC--EEEEECCCCCChhhhcccccccccccc
Confidence 9999999999999999999998877654 2355566666544333222211 1111 000000
Q ss_pred ---------CCCCCCceEEcCCCCEEEEccccc-eEEEEcc
Q 010302 218 ---------ETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 248 (513)
Q Consensus 218 ---------~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~ 248 (513)
......+++|+|+|++|++++.+| |++|++.
T Consensus 652 ~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 652 NSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 001135689999999999998877 9999985
No 121
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-24 Score=209.01 Aligned_cols=262 Identities=13% Similarity=0.179 Sum_probs=194.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-CCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-SNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-~~~~i~ 79 (513)
++| |++++||+++.|+.|++||+.+++....+. .|...+..+.|++++. ++++++.|+.|++|++... ..+++.
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY--TGQGFLNSVCYDSEKE--LLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE--ECSSCEEEEEEETTTT--EEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee--cCCccEEEEEECCCCC--EEEEecCCCeEEEEEeeecCCCCccc
Confidence 467 899999999999999999998877666655 6788999999999988 8999999999999998622 236677
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSI 158 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s 158 (513)
.+..|...|.+++| +++++++++.|+.|++||. ......+..|...+.+++|+| +++++++
T Consensus 99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE----------------GSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET----------------TEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC----------------CcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 88899999999999 6779999999999999983 345667778999999999998 9999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecc-cHHHHHHHhcCCCCccccccccccceeeee--------eeccccCCCCCCceEEcC
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDE-SLEVAQDLQRSDAPLYRLEAIDFGRRMAVE--------KEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e--------~e~~~~~~~~~~~i~fd~ 229 (513)
++.|+.|++|| .++....+.. +...+..+.+++...+ + ....+..+.+. ..+. .....+..++|++
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~-~-~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~ 235 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHF-I-SCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLP 235 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEE-E-EEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECT
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeE-E-EccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEec
Confidence 99999999999 5667777766 5555566666554331 1 11111222211 1111 2234567899999
Q ss_pred CCCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 010302 230 SSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 230 ~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~ 309 (513)
+|+++..+....|++||+.+++++..+..+...+. .+.+ .+++. +++++.|
T Consensus 236 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~-----------------~~~~-----------~~~~~-~~~~~~d 286 (313)
T 3odt_A 236 NGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIW-----------------SVDC-----------MSNGD-IIVGSSD 286 (313)
T ss_dssp TSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEE-----------------EEEE-----------CTTSC-EEEEETT
T ss_pred CCCEEEEecCCEEEEEECCCCceeEEEeccCceEE-----------------EEEE-----------ccCCC-EEEEeCC
Confidence 99644444444599999999999888865542222 1111 14555 4468899
Q ss_pred ceEEEEecCC
Q 010302 310 HRIYLFSRRE 319 (513)
Q Consensus 310 ~~i~i~~~~~ 319 (513)
+.|++|..+.
T Consensus 287 g~i~iw~~~~ 296 (313)
T 3odt_A 287 NLVRIFSQEK 296 (313)
T ss_dssp SCEEEEESCG
T ss_pred CcEEEEeCCC
Confidence 9999998664
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.6e-24 Score=220.10 Aligned_cols=229 Identities=15% Similarity=0.098 Sum_probs=173.7
Q ss_pred CeEecCCCEE-EEEeCCCcEEEEEcc--CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLC-CSISNDKSVKIYDVV--NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~l-as~s~D~~v~iwd~~--~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++|+|+|++| |+++.|++|+|||+. +++....+....++..+.+++|+|++. ++++++.++.|++|++. +.+.
T Consensus 108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~~g~v~~~~~~--~~~~ 183 (450)
T 2vdu_B 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT--TVIIADKFGDVYSIDIN--SIPE 183 (450)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--SCCC
T ss_pred EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC--EEEEEeCCCcEEEEecC--Cccc
Confidence 4799999996 899999999999999 888877766545778899999999988 88889999999999987 4443
Q ss_pred ----eEEeecCCCCeEEEEEcCC---CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc-cccCCcceEEEEE
Q 010302 78 ----LISKKVHMGPVKVMRYNPV---FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE-ILKSKTTVSAIEV 149 (513)
Q Consensus 78 ----i~~~~~h~~~V~~l~~sp~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~ 149 (513)
...+.+|...|.+++|+|+ +++|++++.|++|++||+++. ..+.. +.+|...|.+++|
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~--------------~~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC--------------FIVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT--------------TCEEEECCCCSSCEEEEEE
T ss_pred ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC--------------ceeeeeecCCCCceEEEEE
Confidence 3367789999999999999 999999999999999998763 33444 4579999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 150 SPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 150 spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
+ ++++|++++.|++|++||+++++++..+..+.. +..+..... .....+ ..+. .......+..++|++
T Consensus 250 s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~----~~~~--~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 250 G-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQH----LAPPRF----QNEN--NDIIEFAVSKIIKSK 317 (450)
T ss_dssp C-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH-HGGGCCTTS----BC----------------CBCCCEEEEEECS
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh-hhhhhhhcc----cccccc----cccc--cccceEEEEEEEEeC
Confidence 9 999999999999999999999999988865432 111111100 000000 0000 001123456789999
Q ss_pred CCCEEEEcc-cc-ceEEEEc--ccC---cEEEEeCCC
Q 010302 230 SSNFLIYAT-LL-GIKIVNL--HTN---KVSRILGKV 259 (513)
Q Consensus 230 ~g~~li~~s-~~-gi~v~d~--~t~---~~v~~~g~~ 259 (513)
+|++|++++ .+ .|++|++ .++ +.+..+..+
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP 354 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC
Confidence 999999887 44 5999999 666 555555433
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.4e-24 Score=217.77 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=166.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc---eeEEEEcC-----------------------------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD---MMLMIRLP----------------------------------------- 36 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~---~~~~~~l~----------------------------------------- 36 (513)
|+|||||++|+++ .++.|++||+.+++ .+......
T Consensus 10 v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (450)
T 2vdu_B 10 LLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTA 88 (450)
T ss_dssp EEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------------
T ss_pred EEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccC
Confidence 4789999977765 57899999999988 44443311
Q ss_pred -----------CCCCcEEEEEEcCCCcceE-EEEeCCCCeEEEEecCCCCCcceEEee--cCCCCeEEEEEcCCCCEEEE
Q 010302 37 -----------FIPGAVEWVYKQGDVKAGL-AISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVIS 102 (513)
Q Consensus 37 -----------~~~~~v~~v~~s~~~~~~~-l~s~~~d~~I~iwd~~~~~~~~i~~~~--~h~~~V~~l~~sp~~~~l~s 102 (513)
.+...+.+++|+|++. + +++++.|+.|++||+...+++.+..+. .|...|.+++|+|++++|++
T Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 166 (450)
T 2vdu_B 89 AKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVII 166 (450)
T ss_dssp -----------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEE
Confidence 1223699999999988 5 588999999999999633466777776 67789999999999999999
Q ss_pred EcCCCcEEEecCCCCCCCCcceeeeecCCc-cccccccCCcceEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCeEEEE
Q 010302 103 ADDKGIIEYWSPHTLQFPESEVSFRLKSDT-NLFEILKSKTTVSAIEVSPD---GKQFSITSPDRRIRVFWFRTGKLRRV 178 (513)
Q Consensus 103 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~spd---g~~l~s~s~D~~I~iwd~~tg~~~~~ 178 (513)
++.++.+++|++.+.+. .. ....+.+|...|.+++|+|+ +++|++++.|++|++||+++++++..
T Consensus 167 ~~~~g~v~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPE-----------EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp EETTSEEEEEETTSCCC-----------SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred EeCCCcEEEEecCCccc-----------ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 99999999999877442 11 34467789999999999999 99999999999999999999887765
Q ss_pred ec-ccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEe
Q 010302 179 YD-ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 256 (513)
Q Consensus 179 ~~-~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~ 256 (513)
+. +| ...+..++|+ +|++|++++.++ |++||+.+++++..+
T Consensus 236 ~~~~h------------------------------------~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 236 WLFGH------------------------------------KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF 278 (450)
T ss_dssp ECCCC------------------------------------SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE
T ss_pred eecCC------------------------------------CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee
Confidence 32 21 1245678999 999999998775 999999999999888
Q ss_pred CC
Q 010302 257 GK 258 (513)
Q Consensus 257 g~ 258 (513)
..
T Consensus 279 ~~ 280 (450)
T 2vdu_B 279 DY 280 (450)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 124
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.93 E-value=5.8e-24 Score=218.06 Aligned_cols=264 Identities=15% Similarity=0.169 Sum_probs=193.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
+++++|++||+|+.|++|++||+.+++.... +..|...+..+.+++ . ++++++.|++|++||+. +++.+..+
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~--~--~l~s~~~dg~i~vwd~~--~~~~~~~~ 195 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVGHTGGVWSSQMRD--N--IIISGSTDRTLKVWNAE--TGECIHTL 195 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCCCSSCEEEEEEET--T--EEEEEETTSCEEEEETT--TTEEEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcCCCCCEEEEEecC--C--EEEEEeCCCeEEEEECC--cCcEEEEE
Confidence 4678899999999999999999999887665 458899999999973 3 89999999999999998 88899999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+|...|.++.|+ ++.+++++.|++|++||+++ ++.+..+..|...|.+++| +++++++++.
T Consensus 196 ~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~--------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 196 YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET--------------GQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS--------------CCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC--------------CcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 9999999999995 56899999999999999977 3456677789999999999 8899999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----eccccCCCCCCceEEcCCCCEEEE
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
|+.|++||+++++++..+.+|...+.++.+.+.. .+... .+..+.+.. .+...........++..+++++++
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 334 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGS-LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 334 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSE--EEEEE-TTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEE
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEECCCE--EEEEe-CCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEE
Confidence 9999999999999999998777666655553221 11111 111111110 000001111122234445778888
Q ss_pred ccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 010302 237 ATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 315 (513)
Q Consensus 237 ~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~ 315 (513)
++.++ |++||+.+++.+..+..+... ...+..+. .++.++++|+.|+.|++|
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~~~v~~~~-------------~~~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKH--------------QSAVTCLQ-------------FNKNFVITSSDDGTVKLW 387 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSC--------------SSCEEEEE-------------ECSSEEEEEETTSEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCC--------------CCCEEEEE-------------ECCCEEEEEeCCCeEEEE
Confidence 87665 899999888888877542200 00111111 135689999999999999
Q ss_pred ecCCCC
Q 010302 316 SRREPE 321 (513)
Q Consensus 316 ~~~~~~ 321 (513)
.-+...
T Consensus 388 d~~~~~ 393 (445)
T 2ovr_B 388 DLKTGE 393 (445)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 866543
No 125
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=1.3e-23 Score=215.01 Aligned_cols=227 Identities=18% Similarity=0.205 Sum_probs=185.2
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
+++++|++|++|+.|++|++||+.+++....+ ..|...+.++.+ ++. ++++++.|++|++||+. +++.+..+
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~~--~~~~~~~~ 209 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL--TGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVN--TGEMLNTL 209 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEE--CCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESS--SCCEEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE--cCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEECC--CCcEEEEE
Confidence 56789999999999999999999998877664 478899999988 444 89999999999999998 88899999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+|...|.+++|++ +.+++++.|+.|++||+++... ......+.+|...|.+++| ++++|++++.
T Consensus 210 ~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 210 IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC-----------CEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 99999999999964 5999999999999999977432 1112456679999999999 8899999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
|+.|++||+++++.+..+.+|. ..+..+.| +++++++++.++
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~------------------------------------~~v~~~~~--~~~~l~~g~~dg 316 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHK------------------------------------RGIACLQY--RDRLVVSGSSDN 316 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCS------------------------------------SCEEEEEE--ETTEEEEEETTS
T ss_pred CCeEEEEECCcCcEEEEEcCCC------------------------------------CcEEEEEe--CCCEEEEEeCCC
Confidence 9999999999999988775432 12234556 468888887765
Q ss_pred -eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 242 -IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 242 -i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
|++||+.+++++..+..+...+. .++ .++.++++|+.|+.|++|+-+.
T Consensus 317 ~i~iwd~~~~~~~~~~~~h~~~v~--~~~----------------------------~~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 317 TIRLWDIECGACLRVLEGHEELVR--CIR----------------------------FDNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEE--EEE----------------------------CCSSEEEEEETTSCEEEEEHHH
T ss_pred eEEEEECCCCCEEEEEeCCcCcEE--EEE----------------------------ecCCEEEEEeCCCcEEEEECCC
Confidence 99999999999998876552221 111 2566799999999999998553
No 126
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=4.4e-24 Score=216.02 Aligned_cols=233 Identities=14% Similarity=0.114 Sum_probs=179.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|+|+|++||+|+.|+.|++||+.+++....+. .|...+..+.|.+ . ++++++.|+.|++||++. ....+..
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~--~--~l~~~~~dg~i~i~d~~~-~~~~~~~ 212 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWNR--H--VLSSGSRSGAIHHHDVRI-ANHQIGT 212 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEET--T--EEEEEETTSEEEEEETTS-SSCEEEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEECC--C--EEEEEcCCCCEEEEeccc-CcceeeE
Confidence 5799999999999999999999999888776654 7889999999943 3 899999999999999962 3466778
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-EEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~s~ 159 (513)
+.+|...|.+++|+|++++|++++.|+.|++||+++ +..+..+..|...|.+++|+|++. .++++
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--------------SIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--------------SSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--------------CCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence 889999999999999999999999999999999977 344666778999999999999775 56665
Q ss_pred e--CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccc--cccceeeeee--------ec-cccCCCCCCceE
Q 010302 160 S--PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI--DFGRRMAVEK--------EI-EKTETAPPSNAI 226 (513)
Q Consensus 160 s--~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~r~~~e~--------e~-~~~~~~~~~~i~ 226 (513)
+ .|+.|++||+++++.+..+..+ ..+..+.+++...+.+... ..+ .+.+.. .. .......+..++
T Consensus 279 ~gs~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~dg-~i~v~~~~~~~~~~~~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDN-NLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356 (401)
T ss_dssp CCTTTCEEEEEETTTCCEEEEEECS-SCEEEEEECSSSSEEEEEECTTTC-EEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCC-CcEEEEEECCCCCeEEEEeecCCC-cEEEEecCCccceeEEEecCCCCCEEEEE
Confidence 5 7999999999999999888643 3456667766644443321 222 121111 00 112335678899
Q ss_pred EcCCCCEEEEccccc-eEEEEcccCcEEEEe
Q 010302 227 FDESSNFLIYATLLG-IKIVNLHTNKVSRIL 256 (513)
Q Consensus 227 fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~ 256 (513)
|+++|++|++++.++ |++||+.+++.+...
T Consensus 357 ~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 357 LSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp ECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999998776 999999999887654
No 127
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=212.87 Aligned_cols=231 Identities=13% Similarity=0.189 Sum_probs=162.6
Q ss_pred CeEecC---CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVD---GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~d---g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
|+|+|+ |++||+|+.|+.|++||+.+........+..|...+..++|++++. ++++++.|+.|++||+. +++.
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~--~~~~ 120 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTAKMWDLS--SNQA 120 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS--EEEEEETTSEEEEEETT--TTEE
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC--EEEEEcCCCcEEEEEcC--CCCc
Confidence 579999 6999999999999999999733333334557889999999999888 89999999999999997 6655
Q ss_pred eEEeecCCCCeEEEEE--cCCCCEEEEEcCCCcEEEecCCCCCCCCc-------------------------ceeeeecC
Q 010302 78 LISKKVHMGPVKVMRY--NPVFDTVISADDKGIIEYWSPHTLQFPES-------------------------EVSFRLKS 130 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~--sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-------------------------~~~~~~~~ 130 (513)
+. +..|...|.+++| +|++++|++++.|+.|++||+++.+.... ...|+...
T Consensus 121 ~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 121 IQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp EE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred ee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 54 5679999999999 88999999999999999999987654211 01122211
Q ss_pred Cccccc-c-ccCCcceEEEEEcCCCCE----EEEEeCCCcEEEEEcCCC---eEEEEecccHHHHHHHhcCCCCcccccc
Q 010302 131 DTNLFE-I-LKSKTTVSAIEVSPDGKQ----FSITSPDRRIRVFWFRTG---KLRRVYDESLEVAQDLQRSDAPLYRLEA 201 (513)
Q Consensus 131 ~~~~~~-~-~~~~~~v~~v~~spdg~~----l~s~s~D~~I~iwd~~tg---~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 201 (513)
...... . ..+...+.++++.++... +++++.|+.|++||++.. +.+..+..+.......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~------------ 267 (368)
T 3mmy_A 200 QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT------------ 267 (368)
T ss_dssp SCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----------------
T ss_pred ccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc------------
Confidence 111111 1 112334555555554443 888888888888888775 3333333322100000
Q ss_pred ccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCC
Q 010302 202 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 202 ~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
........+..++|+|+|++|++++.++ |++||+.+++++..+..+.
T Consensus 268 ------------~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 315 (368)
T 3mmy_A 268 ------------SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315 (368)
T ss_dssp ------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred ------------cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCC
Confidence 0000012466889999999999998776 9999999999999887655
No 128
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=8.6e-25 Score=213.96 Aligned_cols=199 Identities=11% Similarity=0.034 Sum_probs=157.3
Q ss_pred CeEec--CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc--
Q 010302 1 MQVSV--DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE-- 76 (513)
Q Consensus 1 v~~s~--dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~-- 76 (513)
|+|+| +|++||||+.|++|++||+++++......+..|...+..++|+|+....++++++.|++|++||++ ...
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~--~~~~~ 140 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT--GEGQW 140 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC--SSSCE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC--CCCCc
Confidence 46775 489999999999999999998765555566788999999999998444489999999999999997 332
Q ss_pred -ceEEeecCCCCeEEEEEcCC-----------------CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc
Q 010302 77 -PLISKKVHMGPVKVMRYNPV-----------------FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 138 (513)
Q Consensus 77 -~i~~~~~h~~~V~~l~~sp~-----------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (513)
....+.+|...|.+++|+|+ +++|++++.|++|++||++.... ...+..+.
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------~~~~~~l~ 209 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-----------WKEEQKLE 209 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-----------EEEEECCB
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-----------cceeeecc
Confidence 23445689999999999997 47899999999999999864210 12456678
Q ss_pred cCCcceEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCeE----EEEecccHHHHHHHhcCCCCccccccccccceeee
Q 010302 139 KSKTTVSAIEVSPDG----KQFSITSPDRRIRVFWFRTGKL----RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 210 (513)
Q Consensus 139 ~~~~~v~~v~~spdg----~~l~s~s~D~~I~iwd~~tg~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~ 210 (513)
+|...|.+++|+|++ ++|++++.|++|++||+.+... ...+.
T Consensus 210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~------------------------------ 259 (316)
T 3bg1_A 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH------------------------------ 259 (316)
T ss_dssp CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE------------------------------
T ss_pred cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh------------------------------
Confidence 899999999999987 8999999999999999876310 00000
Q ss_pred eeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcc
Q 010302 211 EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 248 (513)
Q Consensus 211 e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~ 248 (513)
.....+..++|+|+|++|++++.++ |++|+..
T Consensus 260 ------~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 260 ------KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ------ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ------cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0113456889999999999988765 9999986
No 129
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=9e-24 Score=224.89 Aligned_cols=206 Identities=12% Similarity=0.109 Sum_probs=170.3
Q ss_pred CeEec--CCCEEEEEeCCCcEEEEEccCC------ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC----CeEEEE
Q 010302 1 MQVSV--DGLLCCSISNDKSVKIYDVVNY------DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS----SFVHIY 68 (513)
Q Consensus 1 v~~s~--dg~~las~s~D~~v~iwd~~~~------~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d----~~I~iw 68 (513)
++|+| +|++||+++.|++|++||+.++ +......+..|...+..+.|++++. ++++++.+ +.|.+|
T Consensus 70 ~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~ 147 (615)
T 1pgu_A 70 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISW 147 (615)
T ss_dssp EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEET
T ss_pred EEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEE
Confidence 57999 9999999999999999999765 3344445557889999999999998 66666665 678888
Q ss_pred ecCCCCCcceEEeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc---ce
Q 010302 69 DARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT---TV 144 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v 144 (513)
|. ++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+ .+.+..+..|.. .|
T Consensus 148 d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------~~~~~~~~~~~~~~~~v 209 (615)
T 1pgu_A 148 DS----GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------------FKFSASDRTHHKQGSFV 209 (615)
T ss_dssp TT----CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------------BEEEEEECSSSCTTCCE
T ss_pred EC----CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------------cceeeeecccCCCCceE
Confidence 73 467888899999999999999998 899999999999999876 345667778888 99
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCC
Q 010302 145 SAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 145 ~~v~~spd-g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
.+++|+|+ +++|++++.|+.|++||+++++.+..+.... ......+.
T Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------------------------~~~~~~v~ 257 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ--------------------------------EPVQGGIF 257 (615)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT--------------------------------BCCCSCEE
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc--------------------------------cccCCceE
Confidence 99999999 9999999999999999999999887762100 00112445
Q ss_pred ceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCC
Q 010302 224 NAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 259 (513)
Q Consensus 224 ~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~ 259 (513)
.+.|+ ++++|++++.++ |++||+.+++.+..+..+
T Consensus 258 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 258 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp EEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 78899 999999998765 999999999998887554
No 130
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=211.33 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=170.7
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc-ceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK-AGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~-~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
++|+| ++++|++++.|+.|++||+.+++....+. +...+..+.+++.+. ..++++++.++.|++||++ +++.+
T Consensus 105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~~~~~ 179 (408)
T 4a11_B 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK--SGSCS 179 (408)
T ss_dssp EEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS--SSCCC
T ss_pred EEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC--Cccee
Confidence 47899 78899999999999999999988877766 457788888887553 2378888999999999998 78889
Q ss_pred EEeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeee--ecCCccccccccCCcceEEEEEcCCCCE
Q 010302 79 ISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFR--LKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
..+..|...|.+++|+|+++ +|++++.|+.|++||+++...+...+... ............|...|.+++|+|++++
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 99999999999999999998 58999999999999998754221100000 0011222334568899999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHH--H--HhcCCCCccccccccccceeeeee--------eccccCCCCCC
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ--D--LQRSDAPLYRLEAIDFGRRMAVEK--------EIEKTETAPPS 223 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~--~--~~~~~~~~~~l~~~~~~~r~~~e~--------e~~~~~~~~~~ 223 (513)
|++++.|+.|++||+.+++....+..+..... . ..........+-....+..+.+.. .+ ......+.
T Consensus 260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~v~ 338 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHYKTVD 338 (408)
T ss_dssp EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCSSCEE
T ss_pred EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccCCCeEE
Confidence 99999999999999999876544322110000 0 000000000000000111111111 11 11234567
Q ss_pred ceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeE
Q 010302 224 NAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTL 302 (513)
Q Consensus 224 ~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 302 (513)
.++|+++|++|++++.+| |++||+.+++.+........ ...+++.+...
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~ 388 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT------------------------------KSQLNPAFEDA 388 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe------------------------------cccccccccee
Confidence 899999999999998776 99999999887665432220 01112345566
Q ss_pred EEeeecCceEEEEecC
Q 010302 303 LCCAFKRHRIYLFSRR 318 (513)
Q Consensus 303 ~~s~~~~~~i~i~~~~ 318 (513)
++++.+++.+.+|+..
T Consensus 389 ~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------
T ss_pred ecccCccCceeecCCc
Confidence 7888899999999754
No 131
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.3e-24 Score=235.07 Aligned_cols=223 Identities=12% Similarity=0.075 Sum_probs=170.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|||+|++||+|+.|++|+||+..+.+.... + .|...|..++|++ +. ++++++.|++|++||++ +++++..
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~-~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd~~--~~~~~~~ 94 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--L-EDRSAIKEMRFVK-GI--YLVVINAKDTVYVLSLY--SQKVLTT 94 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTTCEEEEE--C-SSCCCEEEEEEET-TT--EEEEEETTCEEEEEETT--TCSEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--c-CCCCCEEEEEEcC-CC--EEEEEECcCeEEEEECC--CCcEEEE
Confidence 58999999999999999999999987665433 2 3677899999999 66 89999999999999998 7788888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccc-cccccCCcceEEEEEcCC-CCEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL-FEILKSKTTVSAIEVSPD-GKQFSI 158 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~spd-g~~l~s 158 (513)
+. |...|++++|+|++++|++|+.||+|++||+++.++. .+........ ..+.+|.+.|.+++|+|+ +..|++
T Consensus 95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~----~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS----SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE----EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc----cceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 85 7789999999999999999999999999999875420 0111000000 344679999999999996 578999
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
++.|+.| +||++++++++.+..+... .. . .+... ..........+..++|+|+|++|++++
T Consensus 170 g~~dg~v-lWd~~~~~~~~~~~~~~~~-------g~-~-------~~~~~---~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 170 SYEYVTL-TYSLVENEIKQSFIYELPP-------FA-P-------GGDFS---EKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp ECSSCEE-EEETTTTEEEEEECCCBCT-------TC-C-------CSTTC---CCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred EeCCCcE-EEECCCCceEEEEecccCC-------cC-C-------Ccccc---cccccccCCCeEEEEEcCCCCEEEEEE
Confidence 9999999 9999999999888654210 00 0 00000 000011123467899999999999998
Q ss_pred ccc-eEEEEcccCcEEEE
Q 010302 239 LLG-IKIVNLHTNKVSRI 255 (513)
Q Consensus 239 ~~g-i~v~d~~t~~~v~~ 255 (513)
.++ |++||+.+++++..
T Consensus 231 ~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp TTCCEEEEETTTCCEEEE
T ss_pred CCCeEEEEECCCCcEEEE
Confidence 776 99999999998765
No 132
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=3.9e-24 Score=214.64 Aligned_cols=230 Identities=12% Similarity=0.106 Sum_probs=168.7
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|+| ++++|++++.|++|++||+.+...........+...+.++.|++++. ++++++.|+.|++||+ .++++.
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~---~~~~~~ 198 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL---DGHEIF 198 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET---TSCEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC---CCCEEE
Confidence 47999 78999999999999999998644333333334557799999999988 8999999999999999 467888
Q ss_pred EeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFS 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~ 157 (513)
.+..|...|.+++|+|+++ +|++++.|+.|++||+++.+.. ...+..+ .|...|.+++|+| ++++|+
T Consensus 199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~-~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------NSYIAEM-PHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------TCEEEEE-ECSSCEEEEEECTTTSCEEE
T ss_pred EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------cceEEEe-cCCCceEEEEEcCCCCCEEE
Confidence 9999999999999999998 9999999999999999764321 1223333 6899999999999 999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHH-------HHH----------HhcCCCCccccccccccceeeee--------e
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEV-------AQD----------LQRSDAPLYRLEAIDFGRRMAVE--------K 212 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~-------i~~----------~~~~~~~~~~l~~~~~~~r~~~e--------~ 212 (513)
+++.|+.|++||+++++.+..+..+... +.. +.++++..+ .......+.+. .
T Consensus 268 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp EEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEE
T ss_pred EEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceee
Confidence 9999999999999998776665543211 110 111111111 00111222211 1
Q ss_pred ecccc-CCCCCCceEEcCCCCEEEEccccceEEEEccc
Q 010302 213 EIEKT-ETAPPSNAIFDESSNFLIYATLLGIKIVNLHT 249 (513)
Q Consensus 213 e~~~~-~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t 249 (513)
.+..+ ....+..++|+++|++|+++++..|++||+.+
T Consensus 345 ~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 345 QLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp EECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred eecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 12211 23345566999999999999866799999864
No 133
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-23 Score=208.16 Aligned_cols=210 Identities=13% Similarity=0.068 Sum_probs=168.5
Q ss_pred CeEecC--CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCC--CcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVD--GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGD--VKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~d--g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~--~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
++|+++ +++|++++.|++|++||+.+++......+..|...+..+.|+++ +. ++++++.|+.|++||++.....
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCC
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCce
Confidence 468877 99999999999999999999876566666788899999999998 66 8999999999999999843345
Q ss_pred ceEEeecCCCCeEEEEEcC-------------CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 77 PLISKKVHMGPVKVMRYNP-------------VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp-------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
....+..|...|.+++|+| ++++|++++.|+.|++||+++... .......+..|...
T Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDW 208 (379)
T ss_dssp CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSC
T ss_pred eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc----------ceeeEEEEecccCc
Confidence 5566779999999999999 699999999999999999876332 01234566779999
Q ss_pred eEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCeE---EEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc
Q 010302 144 VSAIEVSPD---GKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 217 (513)
Q Consensus 144 v~~v~~spd---g~~l~s~s~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~ 217 (513)
|.+++|+|+ +++|++++.|+.|++||+++++. ...+.. ..
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------------------~~ 254 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE----------------------------------EK 254 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS----------------------------------SC
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc----------------------------------cc
Confidence 999999999 89999999999999999988641 111100 01
Q ss_pred CCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEe
Q 010302 218 ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 256 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~ 256 (513)
....+..++|+++|++|++++.++ |++|++.++.....+
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 294 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccc
Confidence 123456789999999999987775 999999876554443
No 134
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.92 E-value=3.3e-23 Score=211.88 Aligned_cols=223 Identities=17% Similarity=0.191 Sum_probs=178.8
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce---E
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL---I 79 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i---~ 79 (513)
++.++++|++|+.|++|++||+.+++....+. .|...+..+.+++. .+++++.|+.|++||+. +...+ .
T Consensus 179 l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~--~~~~~~~~~ 250 (435)
T 1p22_A 179 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNNG----MMVTCSKDRSIAVWDMA--SPTDITLRR 250 (435)
T ss_dssp EECCSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECCTT----EEEEEETTSCEEEEECS--SSSCCEEEE
T ss_pred EEECCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCcEEEEEEcCC----EEEEeeCCCcEEEEeCC--CCCCceeee
Confidence 45589999999999999999999988776654 78889999999743 89999999999999997 55544 5
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+.+|...|.+++| +++++++++.|+.|++||+++ ++.+..+..|...|.+++| ++++++++
T Consensus 251 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~--~~~~l~~g 312 (435)
T 1p22_A 251 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST--------------CEFVRTLNGHKRGIACLQY--RDRLVVSG 312 (435)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEE--ETTEEEEE
T ss_pred EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc--------------CcEEEEEcCCCCcEEEEEe--CCCEEEEE
Confidence 67799999999999 788999999999999999987 4456777889999999999 67899999
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
+.|+.|++||+++++++..+.+|.. .+..+.| ++++|++++.
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~~------------------------------------~v~~~~~--~~~~l~sg~~ 354 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHEE------------------------------------LVRCIRF--DNKRIVSGAY 354 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSS------------------------------------CEEEEEC--CSSEEEEEET
T ss_pred eCCCeEEEEECCCCCEEEEEeCCcC------------------------------------cEEEEEe--cCCEEEEEeC
Confidence 9999999999999999888765321 2335556 6789999887
Q ss_pred cc-eEEEEcccCc---------EEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 010302 240 LG-IKIVNLHTNK---------VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 240 ~g-i~v~d~~t~~---------~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~ 309 (513)
+| |++||+.+++ ++..+..|.+.+. .++ .|+..+++|+.|
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~----------------------------~~~~~l~s~s~D 404 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQ----------------------------FDEFQIVSSSHD 404 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC--CEE----------------------------ECSSCEEECCSS
T ss_pred CCcEEEEECCCCCCccccccchheeeccCCCCCeE--EEE----------------------------eCCCEEEEEeCC
Confidence 76 9999998877 6666655442111 111 145569999999
Q ss_pred ceEEEEecCC
Q 010302 310 HRIYLFSRRE 319 (513)
Q Consensus 310 ~~i~i~~~~~ 319 (513)
+.|++|+-.+
T Consensus 405 g~i~iwd~~~ 414 (435)
T 1p22_A 405 DTILIWDFLN 414 (435)
T ss_dssp SEEEEEC---
T ss_pred CEEEEEECCC
Confidence 9999997554
No 135
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=2.2e-23 Score=229.75 Aligned_cols=204 Identities=17% Similarity=0.168 Sum_probs=176.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-cceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~-~~i~ 79 (513)
++|+|+|++||+++.|+.|++||+.+++....+. .|...+..+.|+|++. .+++++.|+.|++||+. ++ ....
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~--~~~~~~~ 134 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWE--NNWALEQ 134 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGG--GTSEEEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECC--CCceEEE
Confidence 4799999999999999999999999988777655 7889999999999998 88899999999999997 44 6677
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcC--CCCE
Q 010302 80 SKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSP--DGKQ 155 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp--dg~~ 155 (513)
.+.+|...|.+++|+| +++.|++++.|++|++||+.+. .....+.. +...+.+++|+| ++.+
T Consensus 135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--------------TPNFTLTTGQERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS--------------SCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------cceeEEecCCCCCEEEEEEEECCCCCE
Confidence 8889999999999999 8899999999999999999763 33444444 447899999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
|++++.|+.|++||+.+++.+..+.+|. ..+..++|+|+|++|+
T Consensus 201 l~~~~~dg~i~~~d~~~~~~~~~~~~~~------------------------------------~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 201 MITASDDLTIKIWDYQTKSCVATLEGHM------------------------------------SNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCS------------------------------------SCEEEEEECSSSSEEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEcCCC------------------------------------CCEEEEEEcCCCCEEE
Confidence 9999999999999999999888775421 2345789999999999
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCC
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~ 260 (513)
+++.+| |++||+.+++.+..+..+.
T Consensus 245 ~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCSS
T ss_pred EEeCCCeEEEEECCCCcEEEEeecCC
Confidence 998765 9999999999998886554
No 136
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=7.3e-24 Score=208.61 Aligned_cols=253 Identities=10% Similarity=-0.006 Sum_probs=180.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce-eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec-CCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM-MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA-RADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~-~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~-~~~~~~~i 78 (513)
++|+|+|++|++++.|++|++||+.+++. .....+..|...+.+++|++++.. ++++++.|+.|++||+ . .+ ..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~--~~-~~ 92 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVDLIG--SP-SF 92 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEECSSS--SS-SE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEEecc--CC-ce
Confidence 57999999999999999999999998771 111222368889999999988541 5777888999999999 6 44 34
Q ss_pred EEeec--CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 79 ISKKV--HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 79 ~~~~~--h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
..+.. |...|.+++|+| +++|++++.|+.|++||+++...... ....+.+..+. |...|.+++|+|++ +
T Consensus 93 ~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~-~~~~v~~~~~~~~~--l 163 (342)
T 1yfq_A 93 QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI-----AVKNLNSNNTK-VKNKIFTMDTNSSR--L 163 (342)
T ss_dssp EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE-----EEEESCSSSSS-SCCCEEEEEECSSE--E
T ss_pred EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc-----cccCCeeeEEe-eCCceEEEEecCCc--E
Confidence 67778 999999999999 99999999999999999865110000 00012233343 88899999999988 8
Q ss_pred EEEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC-CCCEE
Q 010302 157 SITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFL 234 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~-~g~~l 234 (513)
++++.|+.|++||+++ +....... .......+..++|++ +++++
T Consensus 164 ~~~~~d~~i~i~d~~~~~~~~~~~~----------------------------------~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 164 IVGMNNSQVQWFRLPLCEDDNGTIE----------------------------------ESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEE----------------------------------ECSCSSCEEEEEECSGGGCEE
T ss_pred EEEeCCCeEEEEECCccccccceee----------------------------------ecCCCCceeEEEECCCCCCEE
Confidence 9999999999999987 54311100 001112456789999 99999
Q ss_pred EEccccc-eEEEEcccC------cEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeee
Q 010302 235 IYATLLG-IKIVNLHTN------KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF 307 (513)
Q Consensus 235 i~~s~~g-i~v~d~~t~------~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~ 307 (513)
++++.++ |++|++..+ +.+..+..+.... .+......+..+.++ +++.++++|+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~s-----------~~~~~l~~~~ 270 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL--------KDTNLAYPVNSIEFS-----------PRHKFLYTAG 270 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT--------TCCSSCCCEEEEEEC-----------TTTCCEEEEE
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccc--------cccccceeEEEEEEc-----------CCCCEEEEec
Confidence 9998776 999999876 5555554433100 000111123333332 6777899999
Q ss_pred cCceEEEEecCC
Q 010302 308 KRHRIYLFSRRE 319 (513)
Q Consensus 308 ~~~~i~i~~~~~ 319 (513)
.+++|++|..+.
T Consensus 271 ~dg~i~vwd~~~ 282 (342)
T 1yfq_A 271 SDGIISCWNLQT 282 (342)
T ss_dssp TTSCEEEEETTT
T ss_pred CCceEEEEcCcc
Confidence 999999997654
No 137
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=9.4e-24 Score=207.83 Aligned_cols=209 Identities=16% Similarity=0.115 Sum_probs=166.4
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEc-cCCceeEEEEcCC--CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDV-VNYDMMLMIRLPF--IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-- 74 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~-~~~~~~~~~~l~~--~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-- 74 (513)
++|+|+++ +|++++.|+.|++||+ .+++. ..+.. |...+..+.|++ +. ++++++.|+.|++||++ +
T Consensus 62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~--~~~ 133 (342)
T 1yfq_A 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPR--NYG 133 (342)
T ss_dssp EEEEESSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHH--HHT
T ss_pred EEECCCCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccc--ccc
Confidence 47999999 9999999999999999 87765 34556 889999999999 66 88899999999999997 5
Q ss_pred -------CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC-CCCCCcceeeeecCCccccccccCCcceEE
Q 010302 75 -------NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 75 -------~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
.+++..+. |...|.+++|+|++ +++++.|+.|++||+++ ... ........|...+.+
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~------------~~~~~~~~~~~~i~~ 198 (342)
T 1yfq_A 134 DGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD------------NGTIEESGLKYQIRD 198 (342)
T ss_dssp TBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC------------CCEEEECSCSSCEEE
T ss_pred cccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc------------cceeeecCCCCceeE
Confidence 56666665 88999999999987 99999999999999976 432 112233457788999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCC------eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 147 IEVSP-DGKQFSITSPDRRIRVFWFRTG------KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 147 v~~sp-dg~~l~s~s~D~~I~iwd~~tg------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
++|+| +++++++++.|+.|++|+++.. +....+..+.... -.....
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 251 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL---------------------------KDTNLA 251 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT---------------------------TCCSSC
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc---------------------------cccccc
Confidence 99999 9999999999999999999876 5444444321100 000112
Q ss_pred CCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCCC
Q 010302 220 APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 259 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~ 259 (513)
..+..++|+++|++|++++.++ |++||+.+++++..+..+
T Consensus 252 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred eeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 3556889999999999998775 999999999999888665
No 138
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=9.8e-24 Score=212.30 Aligned_cols=211 Identities=12% Similarity=0.031 Sum_probs=165.5
Q ss_pred CeEe----cCCCE-EEEEeCCCcEEEEEccC------CceeE-----EEEc-----CCCCCcEEEEEEcCCCcceEEEEe
Q 010302 1 MQVS----VDGLL-CCSISNDKSVKIYDVVN------YDMML-----MIRL-----PFIPGAVEWVYKQGDVKAGLAISD 59 (513)
Q Consensus 1 v~~s----~dg~~-las~s~D~~v~iwd~~~------~~~~~-----~~~l-----~~~~~~v~~v~~s~~~~~~~l~s~ 59 (513)
++|+ |++++ |++++.|+.|++||+.+ ++.+. .+.. ..|...+..+.|++++ +++++
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~ 203 (397)
T 1sq9_A 127 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATG 203 (397)
T ss_dssp EEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEE
T ss_pred EEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEE
Confidence 4688 99999 99999999999999988 55544 4432 4577889999999987 78888
Q ss_pred CCCCeEEEEecCCCCCcceEEeec---C---CCCeEEEEEcCCCCEEEEEcCC---CcEEEecCCCCCCCCcceeeeecC
Q 010302 60 RNSSFVHIYDARADSNEPLISKKV---H---MGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKS 130 (513)
Q Consensus 60 ~~d~~I~iwd~~~~~~~~i~~~~~---h---~~~V~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~ 130 (513)
+.|+.|++||++ +.+++..+.. | ...|.+++|+|++++|++++.| +.|++||+++.
T Consensus 204 ~~dg~i~i~d~~--~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~------------- 268 (397)
T 1sq9_A 204 FNNGTVQISELS--TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG------------- 268 (397)
T ss_dssp CTTSEEEEEETT--TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-------------
T ss_pred eCCCcEEEEECC--CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-------------
Confidence 999999999998 7888999988 9 9999999999999999999999 99999999873
Q ss_pred Ccccccccc-------------CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec------ccHHHHHHHhc
Q 010302 131 DTNLFEILK-------------SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD------ESLEVAQDLQR 191 (513)
Q Consensus 131 ~~~~~~~~~-------------~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~------~~~~~i~~~~~ 191 (513)
+.+..+.. |...|.+++|+|++++|++++.|+.|++||+++++++..+. .+...
T Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------ 341 (397)
T 1sq9_A 269 -ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED------ 341 (397)
T ss_dssp -CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG------
T ss_pred -cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh------
Confidence 33455555 88999999999999999999999999999999999998887 32110
Q ss_pred CCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC----------CEEEEccccc-eEEEEcccCc
Q 010302 192 SDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS----------NFLIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 192 ~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g----------~~li~~s~~g-i~v~d~~t~~ 251 (513)
.. .++. .........+..++|+++| ++|++++.++ |++||+.+|+
T Consensus 342 ~~----------~g~~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 342 IL----------AVDE-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CC----------CBCT-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hh----------cccc-----ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 00 0000 0000013456789999998 7899888765 9999998874
No 139
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.92 E-value=4.2e-23 Score=202.85 Aligned_cols=204 Identities=12% Similarity=0.142 Sum_probs=165.2
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.+++++++|++++.|+.+++||+..... .......|...+..+.+++++...++++++.|+.|++||++ +++++..+
T Consensus 135 ~~~~~~~~l~s~s~d~~~~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~~~~~~~ 211 (340)
T 4aow_A 135 AFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA--NCKLKTNH 211 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT--TTEEEEEE
T ss_pred EEeecCccceeecCCCeEEEEEeCCCce-EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC--CCceeeEe
Confidence 4778999999999999999999976443 44456678889999999998887789999999999999998 88889999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
.+|..+|.+++|+|++++|++++.|+.|++||+++. ..+..+. +...+.+++|+|++.+++ ++.
T Consensus 212 ~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~ 275 (340)
T 4aow_A 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--------------KHLYTLD-GGDIINALCFSPNRYWLC-AAT 275 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--------------EEEEEEE-CSSCEEEEEECSSSSEEE-EEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--------------ceeeeec-CCceEEeeecCCCCceee-ccC
Confidence 999999999999999999999999999999999773 3344443 446799999999987655 567
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
|+.|++||++++..+..+......... ......+..++|+|+|++|++++.++
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------------------~~h~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSS---------------------------KAEPPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC----------------------------------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEECCCCeEEEeccccceeeec---------------------------cCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 999999999999998877643211100 01123456889999999999998876
Q ss_pred -eEEEEcccCc
Q 010302 242 -IKIVNLHTNK 251 (513)
Q Consensus 242 -i~v~d~~t~~ 251 (513)
|+|||+.+|.
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 9999999985
No 140
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=5e-23 Score=211.07 Aligned_cols=259 Identities=17% Similarity=0.234 Sum_probs=194.5
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
++++|++|+.|++|++||+.+++....+. .|...+.++.+++ . .+++++.|+.|++||+. +++.+..+.+|.
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~--~--~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~ 239 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIE--TGQCLHVLMGHV 239 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEET--T--EEEEEETTSEEEEEESS--SCCEEEEEECCS
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCcEEEEEecC--C--EEEEEeCCCEEEEEECC--CCcEEEEEcCCc
Confidence 47899999999999999999988766654 7888999999864 3 79999999999999998 788899999999
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 165 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I 165 (513)
..|.+++| +++++++++.|+.|++||+++ ++.+..+..|...|.+++| +++++++++.|+.|
T Consensus 240 ~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 240 AAVRCVQY--DGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI 301 (445)
T ss_dssp SCEEEEEE--CSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred ccEEEEEE--CCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeE
Confidence 99999999 788999999999999999876 4556777789999999999 89999999999999
Q ss_pred EEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeee--------eeccc--cCCCCCCceEEcCCCCEEE
Q 010302 166 RVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE--------KEIEK--TETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 166 ~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e--------~e~~~--~~~~~~~~i~fd~~g~~li 235 (513)
++||+++++++..+.++...+..+...+. +.+... .+..+.+. ..+.. .....+..++|+ +++|+
T Consensus 302 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 376 (445)
T 2ovr_B 302 RVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGN-ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVI 376 (445)
T ss_dssp EEEETTTCCEEEEECCCCSCEEEEEEETT--EEEEEE-TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEE
T ss_pred EEEECCCCCEEEEEcCCcccEEEEEEeCC--EEEEEe-CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEE
Confidence 99999999999999877655554444333 111111 11112111 11111 122345567775 68999
Q ss_pred Eccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCce---
Q 010302 236 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHR--- 311 (513)
Q Consensus 236 ~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~--- 311 (513)
+++.+| |++||+.+++.++.+..... ......+..+.+ .++..++++|+.|+.
T Consensus 377 s~~~dg~v~iwd~~~~~~~~~~~~~~~------------~~~~~~v~~~~~-----------s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 377 TSSDDGTVKLWDLKTGEFIRNLVTLES------------GGSGGVVWRIRA-----------SNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp EEETTSEEEEEETTTCCEEEEEEECTT------------GGGTCEEEEEEE-----------CSSEEEEEEECSSSSSCC
T ss_pred EEeCCCeEEEEECCCCceeeeeecccc------------CCCCceEEEEEe-----------cCCEEEEEEcccCCCCcc
Confidence 988776 99999999999888721110 001111222323 278899999999996
Q ss_pred -EEEEecC
Q 010302 312 -IYLFSRR 318 (513)
Q Consensus 312 -i~i~~~~ 318 (513)
+++|+=.
T Consensus 434 ~l~v~df~ 441 (445)
T 2ovr_B 434 KLLVLDFD 441 (445)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 9999744
No 141
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=1.3e-22 Score=201.90 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=152.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|||||++||+|+.|+ ++|||+.+++....... ..+..+.+.+.++ .++++++.|++|++||.. +++++..
T Consensus 25 v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~d~~v~iWd~~--~~~~~~~ 96 (355)
T 3vu4_A 25 YEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----RHLSKVRMLHRTN-YVAFVTGVKEVVHIWDDV--KKQDVSR 96 (355)
T ss_dssp EEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----SCCCEEEECTTSS-EEEEECSSTTEEEEEETT--TTEEEEE
T ss_pred EEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec----CCeEEEEEcCCCC-EEEEEECCccEEEEEECC--CCcEEEE
Confidence 57999999999988764 78999987766554432 2466677777665 255677888999999998 7888888
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCC-CCC-------------------------CcceeeeecCCc--
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL-QFP-------------------------ESEVSFRLKSDT-- 132 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~-------------------------~~~~~~~~~~~~-- 132 (513)
+. |...|.+++|+++. ++.+ .|+.|++||+.+. +.. ..+..|+...+.
T Consensus 97 ~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~ 172 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSA 172 (355)
T ss_dssp EE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----
T ss_pred EE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcc
Confidence 86 66799999998764 3322 2566777776654 111 112334444332
Q ss_pred -------------c-ccccccCCcceEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCeEEEEecccHHHHHHHhcCCCCcc
Q 010302 133 -------------N-LFEILKSKTTVSAIEVSPDGKQFSITSPDRR-IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 197 (513)
Q Consensus 133 -------------~-~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~-I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 197 (513)
+ +..+.+|...|.+++|+|+|++|++++.|++ |++||+++++++.++...
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g--------------- 237 (355)
T 3vu4_A 173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG--------------- 237 (355)
T ss_dssp --------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT---------------
T ss_pred ccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---------------
Confidence 1 5677889999999999999999999999998 999999999998877510
Q ss_pred ccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCc
Q 010302 198 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 198 ~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~ 251 (513)
.....+..++|+|+|++|++++.++ |++||+..+.
T Consensus 238 -------------------~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 238 -------------------LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp -------------------TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred -------------------CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 0112456889999999999998775 9999997653
No 142
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.1e-23 Score=204.87 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=179.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC-----CeEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS-----SFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d-----~~I~iwd~~~~~~ 75 (513)
++|+|++++|++++.|++|++||+.+++....+. +...+..+.|++++. ++++++.+ +.|.+||+.....
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcc
Confidence 4799999999999999999999999998887776 668899999999988 77777777 9999999873221
Q ss_pred ---------cceEEeecCCC--CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 76 ---------EPLISKKVHMG--PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 76 ---------~~i~~~~~h~~--~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
..+..+..|.. .+.+++|+|++++|++++.|+.|++||+++. ...+..+..|...|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSI 221 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCE
T ss_pred ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCce
Confidence 24455556666 9999999999999999999999999999762 23456677799999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccc-------------eeeee
Q 010302 145 SAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR-------------RMAVE 211 (513)
Q Consensus 145 ~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------------r~~~e 211 (513)
.+++|+|++++|++++.|+.|++||+++++.+..+.. ...+..+.+++...+.+.....+. .+.+.
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECCC-------------CEEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC-CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEE
Confidence 9999999999999999999999999999999888763 223334444444332222111110 11110
Q ss_pred e--------eccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEe
Q 010302 212 K--------EIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 256 (513)
Q Consensus 212 ~--------e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~ 256 (513)
. .+ ......+..++|+++|++|++++.++ |++|++.++.....+
T Consensus 301 d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 301 HKIFEEEIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp ETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred ecCCCcchhhe-ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 0 11 12234567899999999999998776 999999887654433
No 143
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=2.1e-23 Score=201.05 Aligned_cols=177 Identities=9% Similarity=-0.017 Sum_probs=131.1
Q ss_pred CCcEEEEEc-cCCceeEEEEcCCCCCcEEEEEEcC-CCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC---CCeEE
Q 010302 16 DKSVKIYDV-VNYDMMLMIRLPFIPGAVEWVYKQG-DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM---GPVKV 90 (513)
Q Consensus 16 D~~v~iwd~-~~~~~~~~~~l~~~~~~v~~v~~s~-~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~---~~V~~ 90 (513)
|++|++|++ .+++.+..+. .|+..+..++|++ ++...+++|++.|++|+|||++ ++++++++.+|. ..+.+
T Consensus 156 d~~V~~~~~s~dG~~~~s~~--~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~--TGk~l~tL~g~~~~v~~v~~ 231 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQF--LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK--TGQLLKKMHIDDSYQASVCH 231 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEE--ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT--TCCEEEEEECCC---CCCEE
T ss_pred CCcEEEEEECCCCceeeeec--cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC--CCcEEEEEcCCCcceeeeEE
Confidence 778888888 3465555444 4555666666766 3333389999999999999998 899999998654 46778
Q ss_pred EEEcCCCCEE------------EEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-----ccCCcceEEEEEcCCC
Q 010302 91 MRYNPVFDTV------------ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-----LKSKTTVSAIEVSPDG 153 (513)
Q Consensus 91 l~~sp~~~~l------------~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~spdg 153 (513)
++|+|+|+++ ++|+.|++|++||+.++++ +..+ .+|...+.+..+ ++
T Consensus 232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~--------------l~v~~~~~p~Gh~~~~lsg~~--sg 295 (356)
T 2w18_A 232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS--------------VGVMLYCLPPGQAGRFLEGDV--KD 295 (356)
T ss_dssp EEEEETTEEEEEEC------------CCEEEEEEETTTTEE--------------EEEEEECCCTTCCCCEEEEEE--ET
T ss_pred EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE--------------EEEEEeeccCCCcceeEcccc--CC
Confidence 8999999886 5678899999999877432 2222 256555555555 48
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
..+++++.|++|+|||+.+|++++++.+|... ....++|+|+|++
T Consensus 296 ~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~-----------------------------------vvs~vafSPDG~~ 340 (356)
T 2w18_A 296 HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ-----------------------------------HWSFVKWSGTDSH 340 (356)
T ss_dssp TEEEEEETTSCEEEEETTTCSEEEEECCC--C-----------------------------------CCCEEEECSSSSE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEecCCCCC-----------------------------------eEEEEEECCCCCE
Confidence 89999999999999999999999998764311 2235789999999
Q ss_pred EEEccccc-eEEEEc
Q 010302 234 LIYATLLG-IKIVNL 247 (513)
Q Consensus 234 li~~s~~g-i~v~d~ 247 (513)
|++++.++ |||||+
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 99999876 999996
No 144
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=4.5e-23 Score=202.30 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=164.1
Q ss_pred CeEec--CCCEEEEEeCCCcEEEEEccCCce-------eEEEEcCCCCCcEEEEEEcCC--CcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSV--DGLLCCSISNDKSVKIYDVVNYDM-------MLMIRLPFIPGAVEWVYKQGD--VKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~--dg~~las~s~D~~v~iwd~~~~~~-------~~~~~l~~~~~~v~~v~~s~~--~~~~~l~s~~~d~~I~iwd 69 (513)
++|+| |+++|++++.|++|++||+.+++. .....+..|...+..+.|+++ +. ++++++.|+.|++||
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYD 140 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEE
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEec
Confidence 47888 699999999999999999987632 234445578899999999998 66 899999999999999
Q ss_pred cCCCCCcceEEee-------------cCCCCeEEEEEcCC---CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcc
Q 010302 70 ARADSNEPLISKK-------------VHMGPVKVMRYNPV---FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTN 133 (513)
Q Consensus 70 ~~~~~~~~i~~~~-------------~h~~~V~~l~~sp~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 133 (513)
++ +.+.+..+. .|...+.+++|+|+ +.++++++.++.+.+|+....+ ...
T Consensus 141 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~ 206 (351)
T 3f3f_A 141 AL--EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK------------LHV 206 (351)
T ss_dssp CS--STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC------------EEE
T ss_pred CC--ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc------------eee
Confidence 97 444433322 68889999999997 9999999999999888765532 123
Q ss_pred ccccccCCcceEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccc-----
Q 010302 134 LFEILKSKTTVSAIEVSPDG----KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF----- 204 (513)
Q Consensus 134 ~~~~~~~~~~v~~v~~spdg----~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----- 204 (513)
+..+..|...|.+++|+|++ ++|++++.|+.|++||++++...............................
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 55677899999999999998 899999999999999999876544433322221111111110000000000
Q ss_pred ------cceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEe
Q 010302 205 ------GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 256 (513)
Q Consensus 205 ------~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~ 256 (513)
......-..+. .....+..++|+++|++|++++.++ |++||+.+++.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred eeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 00000111111 1234677899999999999998776 999999988655554
No 145
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.8e-23 Score=201.58 Aligned_cols=195 Identities=9% Similarity=0.039 Sum_probs=149.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEcc---------CCceeEEEEcCCCCCcEEEEEEcC--CCcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVV---------NYDMMLMIRLPFIPGAVEWVYKQG--DVKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~---------~~~~~~~~~l~~~~~~v~~v~~s~--~~~~~~l~s~~~d~~I~iwd 69 (513)
+.|+|+ +++++.|++|++|+.. +++.+..... .|...+.++.++| ++. ++++++.|++|++||
T Consensus 82 ~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd 155 (343)
T 3lrv_A 82 GGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQS 155 (343)
T ss_dssp TCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---CC--EEEEEETTCCEEEEE
T ss_pred eeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEE
Confidence 346676 8999999999999765 4443434332 3557899999999 777 899999999999999
Q ss_pred cCCCCCcceEEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccc-ccccc-CCcceEE
Q 010302 70 ARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL-FEILK-SKTTVSA 146 (513)
Q Consensus 70 ~~~~~~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~ 146 (513)
++ +++++.... .|...|.+++|+|++.+|++|+.|+.|++||+++++ .+ ..+.. |...|.+
T Consensus 156 ~~--~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--------------~~~~~~~~~h~~~v~~ 219 (343)
T 3lrv_A 156 YE--DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD--------------QASSRFPVDEEAKIKE 219 (343)
T ss_dssp SS--SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT--------------SCCEECCCCTTSCEEE
T ss_pred CC--CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC--------------CCccEEeccCCCCEEE
Confidence 98 677766554 556689999999999999999999999999998743 23 45666 9999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC--Cc
Q 010302 147 IEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP--SN 224 (513)
Q Consensus 147 v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~--~~ 224 (513)
++|+|+|++|++++ |+.|++||+++++.+..+.... . ..... ..
T Consensus 220 l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~--------------------------------~-~~~~~~~~~ 265 (343)
T 3lrv_A 220 VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT--------------------------------I-PEFKTGTVT 265 (343)
T ss_dssp EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB--------------------------------C------CCEE
T ss_pred EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc--------------------------------c-ccccccceE
Confidence 99999999999999 5599999999876543322100 0 00011 35
Q ss_pred eEEcCCCCEEEEcc--ccceEEEEcccCc
Q 010302 225 AIFDESSNFLIYAT--LLGIKIVNLHTNK 251 (513)
Q Consensus 225 i~fd~~g~~li~~s--~~gi~v~d~~t~~ 251 (513)
++|+|+|++|++++ ...|++|++.++.
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 89999999999965 4569999997654
No 146
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.8e-23 Score=206.53 Aligned_cols=225 Identities=15% Similarity=0.112 Sum_probs=177.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc---
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP--- 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~--- 77 (513)
++|+|+|++||+++.|+.|++|| .+++.... +..|...+..+.|++++. ++++++.|+.|++||+. +++.
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~--~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~--~~~~~~~ 186 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNV--LNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVI--SGTVMQH 186 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEEE--ECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETT--TTEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeeee--ccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECC--CCcEEEE
Confidence 47999999999999999999999 45555554 447889999999999988 88888899999999986 3332
Q ss_pred -----------------------------------------------------eEEeecCCCCeEEEEEcCCCCEEEEEc
Q 010302 78 -----------------------------------------------------LISKKVHMGPVKVMRYNPVFDTVISAD 104 (513)
Q Consensus 78 -----------------------------------------------------i~~~~~h~~~V~~l~~sp~~~~l~s~s 104 (513)
+..+..|...|.+++|+|++++|++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 334456788899999999999999999
Q ss_pred CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHH
Q 010302 105 DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE 184 (513)
Q Consensus 105 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~ 184 (513)
.|+.|++||+++ .+.+..+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+..+..
T Consensus 267 ~d~~i~i~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 267 DDGTLRIWHGGN--------------GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV 331 (425)
T ss_dssp TTSCEEEECSSS--------------BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred CCCEEEEEECCC--------------CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence 999999999876 34466677799999999999999 999999999999999999999999988777
Q ss_pred HHHHHhcCCCCccccccccccceeee----------------------------eeeccccCCC-CCCceEEcCCCCEEE
Q 010302 185 VAQDLQRSDAPLYRLEAIDFGRRMAV----------------------------EKEIEKTETA-PPSNAIFDESSNFLI 235 (513)
Q Consensus 185 ~i~~~~~~~~~~~~l~~~~~~~r~~~----------------------------e~e~~~~~~~-~~~~i~fd~~g~~li 235 (513)
.+..+.++++..+.+.....+. +.+ -..+..+... .+..++|+++|++|+
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence 7777777776443333222221 111 1111112122 678899999999999
Q ss_pred Eccccc-eEEEEcc
Q 010302 236 YATLLG-IKIVNLH 248 (513)
Q Consensus 236 ~~s~~g-i~v~d~~ 248 (513)
+++.++ |++||+.
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 988776 9999984
No 147
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=5.7e-23 Score=209.17 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=175.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|+|||++||+|+.|++|+|||+.+++.+..+. .|...+.++.+.+ . ++++++.|+.+++||... ....+..
T Consensus 153 v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~--~h~~~v~~~s~~~--~--~l~sgs~d~~i~~~d~~~-~~~~~~~ 225 (420)
T 4gga_A 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSWNS--Y--ILSSGSRSGHIHHHDVRV-AEHHVAT 225 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEET--T--EEEEEETTSEEEEEETTS-SSCEEEE
T ss_pred EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCceEEEeeCC--C--EEEEEeCCCceeEeeecc-cceeeEE
Confidence 5899999999999999999999999988776654 7888888888754 3 899999999999999862 3556678
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC-EEEEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSIT 159 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~s~ 159 (513)
+.+|...+..+.|+|+++++++++.|+.+++|+..+.+.. ...+.....|...|.+++|+|++. .++++
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------WVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC----------SCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred ecccccceeeeeecCCCCeeeeeeccccceEEeecccccc----------ceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence 8899999999999999999999999999999998775421 223455667889999999999765 55554
Q ss_pred --eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccc-cccceeeee--------eeccccCCCCCCceEEc
Q 010302 160 --SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI-DFGRRMAVE--------KEIEKTETAPPSNAIFD 228 (513)
Q Consensus 160 --s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~r~~~e--------~e~~~~~~~~~~~i~fd 228 (513)
+.|++|++||+.+++++..+..+... ..+.+.+.....+... .....+.+. .++.. ....+..++|+
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~~~~~~~~v-~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~s 373 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLSAVDAHSQV-CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMS 373 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEEEEECSSCE-EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEEC
T ss_pred eecCCCEEEEEeCCccccceeeccccce-eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEc
Confidence 47999999999999999888765433 2222333221111111 011112211 11221 23467789999
Q ss_pred CCCCEEEEccccc-eEEEEcccCcEEEEe
Q 010302 229 ESSNFLIYATLLG-IKIVNLHTNKVSRIL 256 (513)
Q Consensus 229 ~~g~~li~~s~~g-i~v~d~~t~~~v~~~ 256 (513)
|+|++|++++.++ |++||+......+..
T Consensus 374 pdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 374 PDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp TTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred CCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 9999999998876 999999876655444
No 148
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=207.92 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=170.3
Q ss_pred CeEecC---CCEEEEEeCCCcEEEEEccCCc-eeEEEEcCCCCCcEEEEEE------cCCCcceEEEEeCCCCeEEEEec
Q 010302 1 MQVSVD---GLLCCSISNDKSVKIYDVVNYD-MMLMIRLPFIPGAVEWVYK------QGDVKAGLAISDRNSSFVHIYDA 70 (513)
Q Consensus 1 v~~s~d---g~~las~s~D~~v~iwd~~~~~-~~~~~~l~~~~~~v~~v~~------s~~~~~~~l~s~~~d~~I~iwd~ 70 (513)
++|+|+ |++|++++.|+.|++||+.+++ ....+ ..|...+..+.| ++++. ++++++.|+.|++||+
T Consensus 71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV--KGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDP 146 (357)
T ss_dssp EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE--CCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECT
T ss_pred EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE--EecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeC
Confidence 468888 7999999999999999999877 55554 478889999965 56666 8999999999999999
Q ss_pred CCCCCc-ceEEeecCCC----CeEEEE----EcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC
Q 010302 71 RADSNE-PLISKKVHMG----PVKVMR----YNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 141 (513)
Q Consensus 71 ~~~~~~-~i~~~~~h~~----~V~~l~----~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (513)
+ ..+ ++..+..|.. .+.+++ |+|++++|++++.|+.|++||+++.+ ......|.
T Consensus 147 ~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~ 209 (357)
T 3i2n_A 147 R--QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------------LRWETNIK 209 (357)
T ss_dssp T--SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE---------------EEEEEECS
T ss_pred C--CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc---------------eeeecCCC
Confidence 7 554 6777776554 899998 78899999999999999999997732 23345688
Q ss_pred cceEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCeEEEEec-----ccHHHHHHHhcCCCCc-cccccccccceeeeee
Q 010302 142 TTVSAIEVSP---DGKQFSITSPDRRIRVFWFRTGKLRRVYD-----ESLEVAQDLQRSDAPL-YRLEAIDFGRRMAVEK 212 (513)
Q Consensus 142 ~~v~~v~~sp---dg~~l~s~s~D~~I~iwd~~tg~~~~~~~-----~~~~~i~~~~~~~~~~-~~l~~~~~~~r~~~e~ 212 (513)
..|.+++|+| ++++|++++.|+.|++||+++++.+..+. +|...+.++.+++... +.+.... ...+.+..
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd 288 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWK 288 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEee
Confidence 8999999999 99999999999999999998876544443 6666677777776543 2222221 12222111
Q ss_pred -e-----------------------cc--ccCCCCCCceEEcCCCCEEE-Eccccc-eEEEEcccCcE
Q 010302 213 -E-----------------------IE--KTETAPPSNAIFDESSNFLI-YATLLG-IKIVNLHTNKV 252 (513)
Q Consensus 213 -e-----------------------~~--~~~~~~~~~i~fd~~g~~li-~~s~~g-i~v~d~~t~~~ 252 (513)
. +. ......+..++|+++|++|+ +++.++ |++||+.+.+.
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 0 00 11234567899999999998 577554 99999987654
No 149
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=3.6e-22 Score=201.54 Aligned_cols=271 Identities=11% Similarity=0.053 Sum_probs=156.8
Q ss_pred EEEEeCCCCeEEEEecCCCCCcce-----EEeecCCCCeEEEEEcC--------CCCEEEEEcCCCcEEEecCCCCCCCC
Q 010302 55 LAISDRNSSFVHIYDARADSNEPL-----ISKKVHMGPVKVMRYNP--------VFDTVISADDKGIIEYWSPHTLQFPE 121 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i-----~~~~~h~~~V~~l~~sp--------~~~~l~s~s~dg~i~iwd~~~~~~~~ 121 (513)
++++++.|++|++||.+ .++.. ..+.+|...|.+++|+| ++++|+|++.|++|+|||+++
T Consensus 103 ~las~~~d~~v~lw~~~--~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~----- 175 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITK--NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD----- 175 (393)
T ss_dssp EEEEEETTSCEEEEEEE--TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET-----
T ss_pred EEEEEeCCCcEEEEECC--CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC-----
Confidence 78999999999999997 44332 23459999999999998 789999999999999999866
Q ss_pred cceeeeecCCccccccccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccc
Q 010302 122 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 200 (513)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~ 200 (513)
+.++..+..|...+.+++|+|++. +|++++.|++|++||+++++.......+.... ........
T Consensus 176 ---------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~------~~~~~s~~ 240 (393)
T 4gq1_A 176 ---------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK------NPWLLTLN 240 (393)
T ss_dssp ---------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS------CCCSEEEE
T ss_pred ---------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc------cceEEecc
Confidence 345666778999999999999875 79999999999999999988765543321110 00000000
Q ss_pred cccccceeeeeeeccccCCCCCCceEEc-CCCCEEEEccccc-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCc
Q 010302 201 AIDFGRRMAVEKEIEKTETAPPSNAIFD-ESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK 278 (513)
Q Consensus 201 ~~~~~~r~~~e~e~~~~~~~~~~~i~fd-~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~ 278 (513)
........ ........+..+.|+ ++|+.|+.++.++ +++||+.+++....+..+........+. . .
T Consensus 241 ~~~~~~~~-----~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~--~---~-- 308 (393)
T 4gq1_A 241 TLPLVNTC-----HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL--P---N-- 308 (393)
T ss_dssp SGGGC-----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS--C---S--
T ss_pred cccceeee-----ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc--c---c--
Confidence 00000000 001122345677775 8999999988765 9999999988777665433222211111 0 0
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCcccCCCcCccCCCCCccccccccccCCCccCCCCC
Q 010302 279 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPD 358 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 358 (513)
...................+..++++|++|++|++|+-.++...... .-...| +.+.+ |. ....
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----~~~~~~----V~sva----fs--pdG~ 372 (393)
T 4gq1_A 309 -VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----IQLGMP----IVDFC----WH--QDGS 372 (393)
T ss_dssp -EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----EECSSC----EEEEE----EC--TTSS
T ss_pred -cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----cCCCCc----EEEEE----Ec--CCCC
Confidence 00110000011222334567889999999999999986654422100 001111 11111 11 1335
Q ss_pred EEEEEeCCeEEEEEeCC
Q 010302 359 NVILHTTMGDIHMKLYP 375 (513)
Q Consensus 359 ~v~~~t~~G~i~i~l~~ 375 (513)
.+..-+..|.+.++|.+
T Consensus 373 ~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 373 HLAIATEGSVLLTRLMG 389 (393)
T ss_dssp EEEEEESSEEEEEEEGG
T ss_pred EEEEEeCCCeEEEEEeC
Confidence 66777888999998865
No 150
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.8e-22 Score=202.46 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=147.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCC-----cEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPG-----AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~-----~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
++|||||++||+++.||+|+|||..+ ++.. +. |.. .+.+++|+|+++ ++++++.|++|++||+. .+
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~--l~-~~~~~~~~sv~svafSPDG~--~LAsgs~DGtVkIWd~~--~~ 161 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN--LD-SKGNLSSRTYHCFEWNPIES--SIVVGNEDGELQFFSIR--KN 161 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEE--CC-CSSCSTTTCEEEEEECSSSS--CEEEEETTSEEEEEECC--CC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeee--cc-CCCccccccEEEEEEcCCCC--EEEEEcCCCEEEEEECC--CC
Confidence 58999999999999999999999653 3333 34 443 599999999999 99999999999999997 44
Q ss_pred c-------ceEEe----ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcc
Q 010302 76 E-------PLISK----KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTT 143 (513)
Q Consensus 76 ~-------~i~~~----~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 143 (513)
. .+.++ .+|...|.+++|+|+| +++++.|+++++||+...+. .+....+. .|...
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-----------~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-----------QPVSRMIQNASRRK 228 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-----------CCCEEEEECCCSSC
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-----------ccceeeecccccCc
Confidence 3 25676 5778899999999999 88888999999999976332 11123453 68889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCC
Q 010302 144 VSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 223 (513)
Q Consensus 144 v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~ 223 (513)
|.+++|+ |+.||+++ +++|++||+.+++......+|. ..+.
T Consensus 229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~------------------------------------~~V~ 269 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL------------------------------------ENFH 269 (588)
T ss_dssp CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC------------------------------------SCCC
T ss_pred EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC------------------------------------ceEE
Confidence 9999999 68999887 7999999999988743322322 2345
Q ss_pred ceEE--cCCCCEEEEccccceEEEEcc
Q 010302 224 NAIF--DESSNFLIYATLLGIKIVNLH 248 (513)
Q Consensus 224 ~i~f--d~~g~~li~~s~~gi~v~d~~ 248 (513)
.++| +|+|+.|+.+..+|.++|..+
T Consensus 270 ~va~~~s~d~~~La~a~edG~klw~~d 296 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNKTSYKVLLED 296 (588)
T ss_dssp EEEETTCSSCEEEEECSSCEEEEEESS
T ss_pred EEEeeeCCCCCEEEEEcCCCCEEEeec
Confidence 7888 899988888887776899876
No 151
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=4.3e-22 Score=202.90 Aligned_cols=269 Identities=14% Similarity=0.145 Sum_probs=191.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEE---cCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIR---LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~---l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++|+|+++++++++.|++|++||+.+++...... +..|...+..+.|++++. ++++++.|+.|++||++ +++.
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~--~~~~ 203 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLK--TLAY 203 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETT--TCCE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECC--CceE
Confidence 5799988888888899999999999988765432 336777899999988877 89999999999999997 7788
Q ss_pred eEEeecCCCCeEEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
+..+..|...+.+++|+|+++.+ ++++.|+.|++||+++++ .+..+.. ...+.+++|+|+|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--------------~~~~~~~-~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--------------EIRKTDK-IGLPRGLLLSKDGKEL 268 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--------------EEEECCC-CSEEEEEEECTTSSEE
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--------------EEEEecC-CCCceEEEEcCCCCEE
Confidence 88888999999999999999988 566689999999997732 3333333 3458999999999999
Q ss_pred EEEe--------CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee-----ec-cccCCCCC
Q 010302 157 SITS--------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EI-EKTETAPP 222 (513)
Q Consensus 157 ~s~s--------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~-~~~~~~~~ 222 (513)
++++ .|+.|++||+.+++.+..+... .....+.++++..+.+-.......+.+.. .+ .......+
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 347 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP 347 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeeccCC-CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence 9888 4889999999999887766321 12334455544321111111111221111 00 00123345
Q ss_pred CceEEcCCCCEEEEcccc----------------ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecc
Q 010302 223 SNAIFDESSNFLIYATLL----------------GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 286 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s~~----------------gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
..++|+++|++|+.++.. .|++||+.+++.+..+..+. .. ..+.+
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~~-----------------~~~~~- 408 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-QP-----------------TGLDV- 408 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-SE-----------------EEEEE-
T ss_pred CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-CC-----------------ceEEE-
Confidence 688999999988877653 59999999999888775422 11 11111
Q ss_pred ccccccCCCCCCCC-eEEEeeecCceEEEEecC
Q 010302 287 AANANESKEPFSDP-TLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 287 ~~~~~~~~~~~~d~-~l~~s~~~~~~i~i~~~~ 318 (513)
. +|+ .|++++..++.|++|...
T Consensus 409 ---------s-~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 409 ---------S-PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ---------C-TTSCEEEEEETTTTEEEEEEET
T ss_pred ---------c-CCCCEEEEEECCCCeEEEEEec
Confidence 1 444 455555679999999754
No 152
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=2e-21 Score=195.15 Aligned_cols=232 Identities=14% Similarity=0.125 Sum_probs=178.6
Q ss_pred CeEecCCCEE-EEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLC-CSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~l-as~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|+|+|++| ++++.|++|++||+.+++....+... ..+..++|+|+++. ++++++.++.|++||+. +++.+.
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~--~~~~~~ 110 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---SSPQGVAVSPDGKQ-VYVTNMASSTLSVIDTT--SNTVAG 110 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSE-EEEEETTTTEEEEEETT--TTEEEE
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---CCccceEECCCCCE-EEEEECCCCEEEEEECC--CCeEEE
Confidence 4799999987 66778999999999999887776632 48999999999873 45677788999999997 777777
Q ss_pred EeecCCCCeEEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE-E
Q 010302 80 SKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF-S 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~ 157 (513)
.+..| ..+.+++|+|+++.+ ++++.++.|++||+.++ +.+..+..+ ..+.+++|+|++++| +
T Consensus 111 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--------------~~~~~~~~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK--------------AVINTVSVG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------EEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred EEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC--------------cEEEEEecC-CCcceEEECCCCCEEEE
Confidence 77654 568999999999977 78889999999999773 333344333 457999999999987 5
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
+++.|+.|++||+++++.+..+..+ ..+..++|+++|++|+.+
T Consensus 175 ~~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTNSVIDTVKVE-------------------------------------AAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECS-------------------------------------SEEEEEEECTTSSEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEecC-------------------------------------CCccceEECCCCCEEEEE
Confidence 6778999999999999887665320 123467899999999887
Q ss_pred c----ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEE
Q 010302 238 T----LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIY 313 (513)
Q Consensus 238 s----~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~ 313 (513)
+ ...|++||+.+++++..+..+. ... . +.+ .+....|++++..+++++
T Consensus 218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~--~---------------~~~----------s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPA--G---------------IAV----------TPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp EECSSCCEEEEEETTTTEEEEEEECCS-SEE--E---------------EEE----------CTTSSEEEEEETTTTEEE
T ss_pred ecCcCCCcEEEEECCCCeEEEEEecCC-Ccc--E---------------EEE----------ccCCCEEEEEcCCCCEEE
Confidence 6 3459999999999888775433 111 1 111 123446778999999999
Q ss_pred EEecCC
Q 010302 314 LFSRRE 319 (513)
Q Consensus 314 i~~~~~ 319 (513)
+|..++
T Consensus 270 v~d~~~ 275 (391)
T 1l0q_A 270 VIDTAT 275 (391)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 998664
No 153
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.90 E-value=1.4e-21 Score=189.97 Aligned_cols=206 Identities=12% Similarity=0.090 Sum_probs=163.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+|+|+|++||+|+.|++|++||+++++.+..+. .|...+..+.+.+ . ++++++.++.+++|+.. .....+..
T Consensus 73 v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~h~~~~~~~~~~~--~--~l~s~~~~~~~~~~~~~-~~~~~~~~ 145 (318)
T 4ggc_A 73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSWNS--Y--ILSSGSRSGHIHHHDVR-VAEHHVAT 145 (318)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEET--T--EEEEEETTSEEEEEETT-SSSCEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEeecCCceeEEEec--CccceEEEeecCC--C--EEEEEecCCceEeeecC-CCceeEEE
Confidence 5799999999999999999999999998877765 6777777666543 3 89999999999999986 23456677
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcc-----------------------------------ee
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE-----------------------------------VS 125 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------------------------------~~ 125 (513)
+.+|...+.++.+++++++|++++.|++|++||+++++..... ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 8899999999999999999999999999999999875532110 01
Q ss_pred eeecCCccccccccCCcceEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccc
Q 010302 126 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS--PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 203 (513)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s--~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 203 (513)
|+..... ......+...+..++|+|+++.+++++ .|+.|++||+++++++.++.+|.
T Consensus 226 wd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~-------------------- 284 (318)
T 4ggc_A 226 WNVCSGA-CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-------------------- 284 (318)
T ss_dssp EETTTCC-EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--------------------
T ss_pred Eeccccc-ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--------------------
Confidence 1111111 112234566789999999999887765 79999999999999999887643
Q ss_pred ccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccC
Q 010302 204 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 250 (513)
Q Consensus 204 ~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~ 250 (513)
..+..++|+|+|++|++++.++ |++||+...
T Consensus 285 ----------------~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 285 ----------------SRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ----------------SCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ----------------CCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 2346789999999999998876 999998653
No 154
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=5.6e-22 Score=191.13 Aligned_cols=227 Identities=13% Similarity=0.142 Sum_probs=156.6
Q ss_pred EEEEeCCCcEEEEEccCC---ceeEEEEcCCCCC-------------------------cEEEEEEcCC----CcceEEE
Q 010302 10 CCSISNDKSVKIYDVVNY---DMMLMIRLPFIPG-------------------------AVEWVYKQGD----VKAGLAI 57 (513)
Q Consensus 10 las~s~D~~v~iwd~~~~---~~~~~~~l~~~~~-------------------------~v~~v~~s~~----~~~~~l~ 57 (513)
+++++ ..+|++|+..+. +.+...+ ++.. .+..+.++|+ ++ .++
T Consensus 57 ~~~~~-~~~v~lw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~--~l~ 131 (356)
T 2w18_A 57 IITAC-EDVVSLWKALDAWQWEKLYTWH--FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQ--VLL 131 (356)
T ss_dssp EEEEE-SSEEEEEEESSSSBEEEEEEEE--CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCE--EEE
T ss_pred EEEec-cceEEEcccCCCccceeeEEEe--ccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCcccccc--EEE
Confidence 44444 569999999987 5555544 3332 4556666766 43 344
Q ss_pred EeC--------------------CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC---CCCEEEEEcCCCcEEEecC
Q 010302 58 SDR--------------------NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP---VFDTVISADDKGIIEYWSP 114 (513)
Q Consensus 58 s~~--------------------~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp---~~~~l~s~s~dg~i~iwd~ 114 (513)
+++ .|+.|++|++. .+++.+..+.+|...+..++|+| ++.+|+|++.|++|+|||+
T Consensus 132 s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s-~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 132 KSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFA-EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL 210 (356)
T ss_dssp EEEEEEEEEEETTTEEEEEESSSTTCEEEEEEEC-TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred eCCCeEEEEecCCCcEEEecccCCCCcEEEEEEC-CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence 322 38899999984 25777888888999999999999 7799999999999999999
Q ss_pred CCCCCCCcceeeeecCCccccccccCC---cceEEEEEcCCCCEE------------EEEeCCCcEEEEEcCCCeEEEEe
Q 010302 115 HTLQFPESEVSFRLKSDTNLFEILKSK---TTVSAIEVSPDGKQF------------SITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~spdg~~l------------~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
++ ++.+.++.+|. ..+.+++|||+|+++ ++|+.|++|++||..+++++.++
T Consensus 211 ~T--------------Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~ 276 (356)
T 2w18_A 211 KT--------------GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM 276 (356)
T ss_dssp TT--------------CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred CC--------------CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence 88 44567776543 357788999999986 56778999999999999988765
Q ss_pred cccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccCcEEEEeCC
Q 010302 180 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 180 ~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g~ 258 (513)
.-. ++. +. ....+..+.+|.++++++.++ |++||+.+|+++.++.+
T Consensus 277 ~~~----------------~p~---Gh--------------~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 277 LYC----------------LPP---GQ--------------AGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp EEC----------------CCT---TC--------------CCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred Eee----------------ccC---CC--------------cceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 210 000 00 001223344578889887664 99999999999999965
Q ss_pred CCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 010302 259 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 316 (513)
Q Consensus 259 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~ 316 (513)
|...... .++ | .+|+.+++||+.|++|+||.
T Consensus 324 H~~~vvs-~va-f-------------------------SPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 324 VSDQHWS-FVK-W-------------------------SGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp C--CCCC-EEE-E-------------------------CSSSSEEEEECTTSCEEEEE
T ss_pred CCCCeEE-EEE-E-------------------------CCCCCEEEEEECCCcEEEec
Confidence 5411110 111 1 27888999999999999995
No 155
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=5.7e-22 Score=202.46 Aligned_cols=215 Identities=15% Similarity=0.182 Sum_probs=159.7
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEccCCcee-----EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDVVNYDMM-----LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~~~~~~~-----~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
|+|+|++. +|++|+.|++|++||+.++... ....+..|...+..++|+|.... ++++++.|+.|++||++...
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSC
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCC
Confidence 57999998 9999999999999999873221 12234578889999999994432 88899999999999998221
Q ss_pred -CcceEEeecCCCCeEEEEEcCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 75 -NEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 75 -~~~i~~~~~h~~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.+++..+..|...|.+++|+|++. ++++++.|+.|++||+++.. ..+..+..|...|.+++|+|+
T Consensus 266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------~~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------SCSEEEECCSSCEEEEEECSS
T ss_pred CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------CCeEEeecCCCCEEEEEECCC
Confidence 267788889999999999999887 68999999999999997732 346677789999999999999
Q ss_pred CC-EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 153 GK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 153 g~-~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
++ +|++++.|+.|++||+.+....... ......+. ..+... ......+..++|++++
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~-----------~~~~~~----~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQST-------EDAEDGPP-----------ELLFIH----GGHTAKISDFSWNPNE 390 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCH-------HHHHHCCT-----------TEEEEC----CCCSSCEEEEEECSSS
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCc-------cccccCCc-----------ceEEEc----CCCCCCceEEEECCCC
Confidence 95 6899999999999999873221100 00000000 000000 0112346788999999
Q ss_pred C-EEEEccccc-eEEEEcccCc
Q 010302 232 N-FLIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 232 ~-~li~~s~~g-i~v~d~~t~~ 251 (513)
+ +|++++.++ |++|++..+.
T Consensus 391 ~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp TTEEEEEETTSEEEEEEECHHH
T ss_pred CCEEEEEECCCCEEEeEccccc
Confidence 9 777777766 8999997653
No 156
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.8e-22 Score=191.66 Aligned_cols=228 Identities=13% Similarity=0.065 Sum_probs=177.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce-eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM-MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~-~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|+|++++|++++.|+.|++|++..... .....+..|...+..+.|. +. ++++++.|+.|++|| ..+.+.
T Consensus 65 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~--~l~~~~~d~~i~~~d----~~~~~~ 136 (313)
T 3odt_A 65 VCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG--VVISGSWDKTAKVWK----EGSLVY 136 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEE----TTEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CC--EEEEEeCCCCEEEEc----CCcEEE
Confidence 47999999999999999999999876431 1223345788899999993 34 889999999999999 356778
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcCCCCEEE
Q 010302 80 SKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~ 157 (513)
.+..|...+.+++|+| +++++++++.|+.|++||. ......+.. |...+.+++|+|+++ ++
T Consensus 137 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~----------------~~~~~~~~~~~~~~i~~~~~~~~~~-~~ 199 (313)
T 3odt_A 137 NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN----------------DKVIKTFSGIHNDVVRHLAVVDDGH-FI 199 (313)
T ss_dssp EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET----------------TEEEEEECSSCSSCEEEEEEEETTE-EE
T ss_pred ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec----------------CceEEEEeccCcccEEEEEEcCCCe-EE
Confidence 8889999999999998 9999999999999999984 234455555 888999999999998 89
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee--------eccccCCCCCCceEEcC
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK--------EIEKTETAPPSNAIFDE 229 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~--------e~~~~~~~~~~~i~fd~ 229 (513)
+++.|+.|++||+++++.+..+..|...+.++.++++.. .+ .......+.+.. .+ ......+..++|++
T Consensus 200 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV-SCGEDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMS 276 (313)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE-EEETTSEEEEECTTTCCEEEEE-ECSSSCEEEEEECT
T ss_pred EccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE-EEecCCEEEEEECCCCceeEEE-eccCceEEEEEEcc
Confidence 999999999999999999999998888888888887752 22 222222232221 11 12234667899999
Q ss_pred CCCEEEEccccceEEEEcccCcEEEEe
Q 010302 230 SSNFLIYATLLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 230 ~g~~li~~s~~gi~v~d~~t~~~v~~~ 256 (513)
+|++++.+.+..|++||+.+++.+...
T Consensus 277 ~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 277 NGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp TSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred CCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 999776556666999999998876554
No 157
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=193.15 Aligned_cols=200 Identities=14% Similarity=0.144 Sum_probs=149.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEE--cCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYK--QGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~--s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
++|+|++++|++++.|++|++||+.+++..... .|...+..+.| ++++. ++++++.|+.|++||++ +++++
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~--~~~~~ 164 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA---QHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTR--SSNPM 164 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSS--CSSCS
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCceeec---cccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECC--CCcEE
Confidence 579999999999999999999999988866543 48889999999 66666 89999999999999998 67777
Q ss_pred EEeecCC-----------------------------------------CCeEEEEEcCCCCE----EEEEcCCCcEEEec
Q 010302 79 ISKKVHM-----------------------------------------GPVKVMRYNPVFDT----VISADDKGIIEYWS 113 (513)
Q Consensus 79 ~~~~~h~-----------------------------------------~~V~~l~~sp~~~~----l~s~s~dg~i~iwd 113 (513)
..+..|. ..+.++.+.++... +++++.|+.|++||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 165 MVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred EEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 7766443 22333333333322 67777777777777
Q ss_pred CCCCCCCCcceeeeecCCccccccccCCc------------ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 114 PHTLQFPESEVSFRLKSDTNLFEILKSKT------------TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
++.... ...+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+++++..+..
T Consensus 245 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 245 INPPNP-----------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp SSCSCH-----------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred cCCCCc-----------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 655321 023444455554 799999999999999999999999999999999887754
Q ss_pred cHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc----eEEEEcccCcEEE
Q 010302 182 SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG----IKIVNLHTNKVSR 254 (513)
Q Consensus 182 ~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g----i~v~d~~t~~~v~ 254 (513)
|. ..+..++|+|+|++|++++.++ +.+|+....+.+.
T Consensus 314 ~~------------------------------------~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i~ 354 (368)
T 3mmy_A 314 LD------------------------------------QPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIF 354 (368)
T ss_dssp CS------------------------------------SCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEEE
T ss_pred CC------------------------------------CCceEEEECCCCCeEEEEecccccccccccCCCccceee
Confidence 21 2346789999999999997653 5556655544443
No 158
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.3e-22 Score=215.53 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=167.5
Q ss_pred CeEecC--CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCC--CcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVD--GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGD--VKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~d--g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~--~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
++|+|+ |++|++|+.||+|++||+.+++......+..|...+.++.|+|+ +. ++++++.|+.|++||++.....
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCC
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCc
Confidence 468888 99999999999999999999876566666789999999999998 66 8999999999999999844345
Q ss_pred ceEEeecCCCCeEEEEEcC-------------CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 77 PLISKKVHMGPVKVMRYNP-------------VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp-------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
....+.+|...|.+++|+| +++++++++.||.|++||+++... .......+..|...
T Consensus 137 ~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDW 206 (753)
T ss_dssp CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSC
T ss_pred ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc----------cceeeeeecCCCCc
Confidence 5667779999999999999 589999999999999999876431 01334566789999
Q ss_pred eEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCC
Q 010302 144 VSAIEVSPD---GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA 220 (513)
Q Consensus 144 v~~v~~spd---g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~ 220 (513)
|.+++|+|+ +++|++++.|+.|++||+++++...... .. .......
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------------~~----------------~~~~~~~ 255 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---------------LL----------------KEEKFPD 255 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---------------BS----------------SSSCCSS
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---------------Ee----------------ccCCCCC
Confidence 999999999 8999999999999999998764210000 00 0011224
Q ss_pred CCCceEEcCCCCEEEEccccc-eEEEEcccCc
Q 010302 221 PPSNAIFDESSNFLIYATLLG-IKIVNLHTNK 251 (513)
Q Consensus 221 ~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~~ 251 (513)
.+..++|+|+|+++++++.+| |++||+.++.
T Consensus 256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 567899999999999988776 9999998654
No 159
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.88 E-value=6.6e-21 Score=189.48 Aligned_cols=215 Identities=15% Similarity=0.181 Sum_probs=151.0
Q ss_pred eEecCCCEEE-EEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCc----------------------------
Q 010302 2 QVSVDGLLCC-SISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVK---------------------------- 52 (513)
Q Consensus 2 ~~s~dg~~la-s~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~---------------------------- 52 (513)
++++++++++ +++.|++|++||+.+++.+..+. +...+..+.++++..
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 141 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGG 141 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEE
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCc
Confidence 5677888774 56678999999999998877765 334566666654310
Q ss_pred ------ceEEEE-eCCCCeEEEEecCCCCCc---------------c-eEEeecCCCCeEEEEEcCCCCEEEEEcCCCc-
Q 010302 53 ------AGLAIS-DRNSSFVHIYDARADSNE---------------P-LISKKVHMGPVKVMRYNPVFDTVISADDKGI- 108 (513)
Q Consensus 53 ------~~~l~s-~~~d~~I~iwd~~~~~~~---------------~-i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~- 108 (513)
..++++ ++.|+.|++||++ +++ + +..+.+|...|.+++|+|++++|++++.|++
T Consensus 142 ~~~~s~~~la~~sg~~~g~v~iwd~~--~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 142 VCEFSNGLLVYSNEFNLGQIHITKLQ--SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEEEETTEEEEEESSCTTCEEEEECC--C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred eEEEEccEEEEeCCCcCcEEEEEECC--CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 112333 7889999999997 433 2 7788899999999999999999999999998
Q ss_pred EEEecCCCCCCCCcceeeeecCCccccccc-c-CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEecccHH
Q 010302 109 IEYWSPHTLQFPESEVSFRLKSDTNLFEIL-K-SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLR--RVYDESLE 184 (513)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~--~~~~~~~~ 184 (513)
|++||+++ ++.+..+. + |...|.+++|+|+|++|++++.|++|++||++++... ..+...
T Consensus 220 v~iwd~~~--------------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~-- 283 (355)
T 3vu4_A 220 IRVFKTED--------------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW-- 283 (355)
T ss_dssp EEEEETTT--------------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT--
T ss_pred EEEEECCC--------------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce--
Confidence 99999987 44566776 4 9999999999999999999999999999999875321 111110
Q ss_pred HHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcccC
Q 010302 185 VAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 250 (513)
Q Consensus 185 ~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~t~ 250 (513)
..+. + .. .........+..........++|+++|++|+.++.+| +++|++..+
T Consensus 284 ------~~~~--~-~~----~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 284 ------INMK--Y-FQ----SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ------EECC--C-CC----CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ------eecc--c-cc----cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0000 0 00 0000000111111222346789999999999988776 889988654
No 160
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.87 E-value=5.1e-20 Score=184.88 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=169.9
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
+.++++++.|++|++||+.+++....+. .+ ..+.++.|++++.. ++++++.|+.|++||+. +++.+..+..+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~--~~-~~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~--~~~~~~~~~~~~- 74 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIP--VG-SNPMGAVISPDGTK-VYVANAHSNDVSIIDTA--TNNVIATVPAGS- 74 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTTSSE-EEEEEGGGTEEEEEETT--TTEEEEEEECSS-
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEee--cC-CCcceEEECCCCCE-EEEECCCCCeEEEEECC--CCeEEEEEECCC-
Confidence 3568888999999999999998877766 23 45899999999873 45778889999999997 788888887655
Q ss_pred CeEEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE-EEEeCCCc
Q 010302 87 PVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF-SITSPDRR 164 (513)
Q Consensus 87 ~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~s~s~D~~ 164 (513)
.+.+++|+|++++| ++++.++.|++||+.+++ .+..+. +...+.+++|+|++++| ++++.|+.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--------------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--------------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCe--------------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCE
Confidence 89999999999977 456677999999997733 233333 34568999999999987 67778999
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE-Ecccc-ce
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI-YATLL-GI 242 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li-~~s~~-gi 242 (513)
|++||+.+++.+..+..+ ..+..++|+++|++|+ .+..+ .|
T Consensus 140 v~~~d~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~dg~~l~~~~~~~~~v 182 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVG-------------------------------------RSPKGIAVTPDGTKVYVANFDSMSI 182 (391)
T ss_dssp EEEEETTTTEEEEEEECC-------------------------------------SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEECCCCcEEEEEecC-------------------------------------CCcceEEECCCCCEEEEEeCCCCEE
Confidence 999999999987766431 1224778999999885 44444 49
Q ss_pred EEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCC-eEEEeee--cCceEEEEecCC
Q 010302 243 KIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP-TLLCCAF--KRHRIYLFSRRE 319 (513)
Q Consensus 243 ~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~l~~s~~--~~~~i~i~~~~~ 319 (513)
++||+.+++++..+..+. .... +.+ .+++ .|++++. .+++|++|..+.
T Consensus 183 ~~~d~~~~~~~~~~~~~~-~~~~-----------------~~~-----------~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 183 SVIDTVTNSVIDTVKVEA-APSG-----------------IAV-----------NPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp EEEETTTTEEEEEEECSS-EEEE-----------------EEE-----------CTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred EEEECCCCeEEEEEecCC-Cccc-----------------eEE-----------CCCCCEEEEEecCcCCCcEEEEECCC
Confidence 999999999888775433 1111 111 1444 4455444 689999998765
Q ss_pred C
Q 010302 320 P 320 (513)
Q Consensus 320 ~ 320 (513)
.
T Consensus 234 ~ 234 (391)
T 1l0q_A 234 N 234 (391)
T ss_dssp T
T ss_pred C
Confidence 3
No 161
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.86 E-value=3.8e-20 Score=190.47 Aligned_cols=233 Identities=14% Similarity=0.161 Sum_probs=168.1
Q ss_pred EcCCCCCc-EEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEe
Q 010302 34 RLPFIPGA-VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW 112 (513)
Q Consensus 34 ~l~~~~~~-v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw 112 (513)
.+.+|... +.++.+. +. ++++++.|++|++||+. +++++..+.+|...|.+++|+|++ ++++++.|++|++|
T Consensus 116 ~l~~h~~~v~~~~~~~--~~--~l~sgs~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFE--DN--YVITGADDKMIRVYDSI--NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEECCSSSCEEEEEEE--TT--EEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEcCCCCCcEEEEEEC--CC--EEEEEcCCCcEEEEECC--CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 34467666 4566664 34 89999999999999998 888999999999999999999988 99999999999999
Q ss_pred cCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc--CCCCEEEEEeCCCcEEEEEcCCCeE---------------
Q 010302 113 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS--PDGKQFSITSPDRRIRVFWFRTGKL--------------- 175 (513)
Q Consensus 113 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--pdg~~l~s~s~D~~I~iwd~~tg~~--------------- 175 (513)
|+++ ++.+..+..|...|.+++|+ +++++|++++.|++|++||+++++.
T Consensus 189 d~~~--------------~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 189 DIKK--------------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ETTT--------------TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred ECCC--------------CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 9977 45567778899999999998 5889999999999999999998763
Q ss_pred --------EEEecccHHHHHHHhcCCCCccccccccccceeeeee-----ecc--ccCCCCCCceEEcCCCCEEEEcccc
Q 010302 176 --------RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK-----EIE--KTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 176 --------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~-----e~~--~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
+..+.+|...+.++...+. +.+... .+..+.+.. .+. ......+..++|+++|+++++++.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGN--IVVSGS-YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETT--EEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCC--EEEEEe-CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 3334443332222211111 111111 111111110 000 1123456788999999999999887
Q ss_pred c-eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 241 G-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 241 g-i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+ |++||+.+++++..+..+...+..+.+ ++..+++|+.|+.|++|..++
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~------------------------------~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHTALVGLLRL------------------------------SDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEE------------------------------CSSEEEEEETTSEEEEEETTT
T ss_pred CcEEEEECCCCcEEEEEeCCCCcEEEEEE------------------------------cCCEEEEEeCCCcEEEEECCC
Confidence 6 999999999999998765532221111 245799999999999997664
Q ss_pred C
Q 010302 320 P 320 (513)
Q Consensus 320 ~ 320 (513)
.
T Consensus 382 ~ 382 (464)
T 3v7d_B 382 Y 382 (464)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=3e-18 Score=174.05 Aligned_cols=203 Identities=14% Similarity=0.090 Sum_probs=151.0
Q ss_pred CeEecCCCEEEEEeCCC---cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC--CeEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSISNDK---SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS--SFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s~D~---~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d--~~I~iwd~~~~~~ 75 (513)
++|||||++||+++.|+ +|++||+.+++... +..+...+..++|+|+++. ++++++.+ ..|++||+. ++
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---l~~~~~~~~~~~~spdg~~-la~~~~~~g~~~i~~~d~~--~~ 257 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLA--SG 257 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETT--TC
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---eecCCCcccCEEEcCCCCE-EEEEEecCCCceEEEEECC--CC
Confidence 47999999999999875 99999999887653 2346678999999999984 33355544 459999996 44
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEcC-CC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISADD-KG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
+ ...+..|...+.+++|+|+|++|+.++. ++ .|.+||+.+++ ...+..+...+.+++||||
T Consensus 258 ~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---------------~~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 258 Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---------------PQRITWEGSQNQDADVSSD 321 (415)
T ss_dssp C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------CEECCCSSSEEEEEEECTT
T ss_pred C-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------------EEEEecCCCcccCeEECCC
Confidence 4 4667788899999999999999988775 45 56667876532 2334456678899999999
Q ss_pred CCEEEEEeCC---CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 153 GKQFSITSPD---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 153 g~~l~s~s~D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
|++|++++.+ ..|++||+.+++... +..+ .....++|+|
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~-------------------------------------~~~~~~~~sp 363 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST-------------------------------------FLDETPSLAP 363 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS-------------------------------------SSCEEEEECT
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEEE-ecCC-------------------------------------CCcCCeEEcC
Confidence 9999988754 589999999887632 2210 1235789999
Q ss_pred CCCEEEEccccc----eEEEEcccCcEEEEeCCCCccch
Q 010302 230 SSNFLIYATLLG----IKIVNLHTNKVSRILGKVENNDR 264 (513)
Q Consensus 230 ~g~~li~~s~~g----i~v~d~~t~~~v~~~g~~~~~~r 264 (513)
+|++|++++.++ |.+||+..+. .+.+..+++.++
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~ 401 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVK 401 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEE
T ss_pred CCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCc
Confidence 999999887553 8999997554 555544443444
No 163
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=8.6e-18 Score=170.63 Aligned_cols=190 Identities=11% Similarity=0.055 Sum_probs=141.7
Q ss_pred CCCEEEEEeCC------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC---CeEEEEecCCCCCc
Q 010302 6 DGLLCCSISND------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS---SFVHIYDARADSNE 76 (513)
Q Consensus 6 dg~~las~s~D------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d---~~I~iwd~~~~~~~ 76 (513)
.+..++.++.+ ++|++||+..... ..+. .|...+..++|+|+++ .+++++.+ ..|++||+. +++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l~--~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~--tg~ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVVH--RSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLA--NGA 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEEE--EESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETT--TCC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCC-EEEe--CCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECC--CCc
Confidence 36777777754 7999999975443 3333 5778899999999998 66666555 499999997 555
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEE-EEcCCCc--EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVI-SADDKGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
.. .+..|...+.+++|+|+|++|+ +++.++. |.+||+.+++ ...+..|...+.+++|+|||
T Consensus 215 ~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---------------~~~l~~~~~~~~~~~~spdg 278 (415)
T 2hqs_A 215 VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------IRQVTDGRSNNTEPTWFPDS 278 (415)
T ss_dssp EE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---------------EEECCCCSSCEEEEEECTTS
T ss_pred EE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---------------EEeCcCCCCcccceEECCCC
Confidence 54 5667888999999999999887 7776665 8889987632 34566678889999999999
Q ss_pred CEEEEEeC-CC--cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 154 KQFSITSP-DR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 154 ~~l~s~s~-D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++|++++. ++ .|.+||+.+++... +..+ ......++|+|+
T Consensus 279 ~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~------------------------------------~~~~~~~~~spd 321 (415)
T 2hqs_A 279 QNLAFTSDQAGRPQVYKVNINGGAPQR-ITWE------------------------------------GSQNQDADVSSD 321 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCCEE-CCCS------------------------------------SSEEEEEEECTT
T ss_pred CEEEEEECCCCCcEEEEEECCCCCEEE-EecC------------------------------------CCcccCeEECCC
Confidence 99998886 45 67777888776422 1100 012236789999
Q ss_pred CCEEEEcccc----ceEEEEcccCcEEEE
Q 010302 231 SNFLIYATLL----GIKIVNLHTNKVSRI 255 (513)
Q Consensus 231 g~~li~~s~~----gi~v~d~~t~~~v~~ 255 (513)
|++|++++.. .|++||+.++++..+
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQVL 350 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence 9999988753 599999999887443
No 164
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=2.3e-18 Score=175.20 Aligned_cols=233 Identities=14% Similarity=0.086 Sum_probs=168.2
Q ss_pred EecCCCEEEEEe--------------CCC--cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEE
Q 010302 3 VSVDGLLCCSIS--------------NDK--SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVH 66 (513)
Q Consensus 3 ~s~dg~~las~s--------------~D~--~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~ 66 (513)
|+|+++.++..+ .|+ .|..||..++.......+..+ ..+..+.|++++. ++++++.++.|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~ 147 (433)
T 3bws_A 71 YKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMD 147 (433)
T ss_dssp CCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEE
T ss_pred ccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEE
Confidence 677777665443 223 444444444432222222222 3455788998544 888888999999
Q ss_pred EEecCCCCCcceEE-----eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC
Q 010302 67 IYDARADSNEPLIS-----KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 141 (513)
Q Consensus 67 iwd~~~~~~~~i~~-----~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (513)
+||+. +++.+.. +.+|...|.+++|+|+++++++++.|+.|++||+++. +.+..+..|.
T Consensus 148 ~~d~~--~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--------------~~~~~~~~~~ 211 (433)
T 3bws_A 148 VLDIN--SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--------------AYKATVDLTG 211 (433)
T ss_dssp EEETT--TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--------------CEEEEEECSS
T ss_pred EEECC--CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--------------eEEEEEcCCC
Confidence 99997 6777663 3478889999999999999999999999999999763 4455666788
Q ss_pred cceEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCC
Q 010302 142 TTVSAIEVSPDGKQFSI-TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA 220 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s-~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~ 220 (513)
..+.+++|+|+++++++ ++.|+.|++||+++++.+..+..+ .
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------------------~ 254 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-------------------------------------G 254 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-------------------------------------S
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-------------------------------------C
Confidence 89999999999998854 447999999999999887765421 1
Q ss_pred CCCceEEcCCCCEEEEccc---------cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccc
Q 010302 221 PPSNAIFDESSNFLIYATL---------LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 291 (513)
Q Consensus 221 ~~~~i~fd~~g~~li~~s~---------~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (513)
.+..++|+++|++|++++. ..|++||+.+++++..++... ..+ .++
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~--~~~---------------------- 309 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-NKR--HIV---------------------- 309 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE-CEE--EEE----------------------
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC-Ccc--eEE----------------------
Confidence 1347899999999988763 359999999998887764322 111 111
Q ss_pred cCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 292 ESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 292 ~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
+.+....+++++..++++++|..++
T Consensus 310 ---~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 310 ---SGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp ---ECSSTTEEEEEETTTTEEEEEETTT
T ss_pred ---ECCCCCEEEEEecCCCEEEEEECCC
Confidence 1133447899999999999997664
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1.3e-18 Score=177.58 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=145.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc----------eeEE----EEcCCCCCcEEEEEEcCCCcceEEE----EeCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD----------MMLM----IRLPFIPGAVEWVYKQGDVKAGLAI----SDRNS 62 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~----------~~~~----~~l~~~~~~v~~v~~s~~~~~~~l~----s~~~d 62 (513)
+++++++.++++++.|+ +++|+..... .... ..+ .++..+..++|+++++ +++ +++.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~--~lav~~~sgs~d 117 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNL--TLSACMMSSEYG 117 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSC--EEEEEEEETTTE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCC--EEEEEEeccCCC
Confidence 47899999999999887 9998764210 0000 011 2346799999999988 555 88999
Q ss_pred CeEEEEecCCCCC--------cc---eEEeecCCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecC
Q 010302 63 SFVHIYDARADSN--------EP---LISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 130 (513)
Q Consensus 63 ~~I~iwd~~~~~~--------~~---i~~~~~h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 130 (513)
+.|++||+. +. ++ +..+.+|...|.+++|+|+ +++|++++.|++|++||+++.
T Consensus 118 ~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~------------- 182 (434)
T 2oit_A 118 SIIAFFDVR--TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET------------- 182 (434)
T ss_dssp EEEEEEEHH--HHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-------------
T ss_pred ceEEEEEcc--ccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-------------
Confidence 999999986 22 22 3445579999999999997 899999999999999999773
Q ss_pred CccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeee
Q 010302 131 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 210 (513)
Q Consensus 131 ~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~ 210 (513)
..+.....|...|.+++|+|+|++|++|+.|++|++||.+ ++....+..+... .
T Consensus 183 -~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~--------------~---------- 236 (434)
T 2oit_A 183 -VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY--------------E---------- 236 (434)
T ss_dssp -EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC--------------C----------
T ss_pred -cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc--------------C----------
Confidence 2334445678899999999999999999999999999998 6665555332100 0
Q ss_pred eeeccccCCCCCCceEEcCCCCEEEEcc-cc-------ceEEEEcccC
Q 010302 211 EKEIEKTETAPPSNAIFDESSNFLIYAT-LL-------GIKIVNLHTN 250 (513)
Q Consensus 211 e~e~~~~~~~~~~~i~fd~~g~~li~~s-~~-------gi~v~d~~t~ 250 (513)
......+..+.|++++.+++..+ .+ .+++|++.+.
T Consensus 237 -----~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 237 -----SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp -----TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred -----CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00011345788999888886533 21 2889998754
No 166
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=7.8e-17 Score=158.86 Aligned_cols=238 Identities=11% Similarity=0.013 Sum_probs=175.1
Q ss_pred CeEecCCCEEEEEeC-------CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC
Q 010302 1 MQVSVDGLLCCSISN-------DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD 73 (513)
Q Consensus 1 v~~s~dg~~las~s~-------D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~ 73 (513)
++|||+|+++++++. +++|.+||..+++....+... .....+.++++++. +++++..++.|.+||+.
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~-- 119 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINNTTQT-LWFGNTVNSAVTAIDAK-- 119 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEETTTTE-EEEEETTTTEEEEEETT--
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECCCCCE-EEEEecCCCEEEEEeCC--
Confidence 479999999888874 568999999999888777643 34567788998874 56667778999999997
Q ss_pred CCcceEEeecCCCC---------eEEEEEcCCCCEEEEEc--CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 74 SNEPLISKKVHMGP---------VKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 74 ~~~~i~~~~~h~~~---------V~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
+++.+..+..+... +.+++|+|+++++++++ .++.|.+||+.+++ .+..+..+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~ 185 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK--------------LKTAIQNTGK 185 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--------------EEEEECCCCT
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--------------eEEEecCCCC
Confidence 77887777754322 68899999999876665 57889999997733 3344443455
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
.+.+++|+|+|+++++++.++.|.+||..+++.+..+.... .......
T Consensus 186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------------------------~~~~~~~ 233 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD--------------------------------DGKEHFF 233 (353)
T ss_dssp TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC--------------------------------SSSCCCE
T ss_pred ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC--------------------------------CCCCccc
Confidence 57889999999999999999999999999999877654200 0001123
Q ss_pred CceEEcCCCCEEEEcccc--ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCC
Q 010302 223 SNAIFDESSNFLIYATLL--GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP 300 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s~~--gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 300 (513)
..++|+++|++++.++.. .|.+||..+++.+..+.... . . .+ .++ +...
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~--~~---------------~~s----------~dg~ 284 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-S-L--AV---------------LFN----------PARN 284 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-C-C--CE---------------EEE----------TTTT
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-C-c--eE---------------EEC----------CCCC
Confidence 468999999988766543 59999999999888774322 1 0 11 111 2334
Q ss_pred eEEEeeecCceEEEEecCC
Q 010302 301 TLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 301 ~l~~s~~~~~~i~i~~~~~ 319 (513)
.++++...+++|++|+..+
T Consensus 285 ~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEECCC
Confidence 5788888899999997654
No 167
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.77 E-value=1.1e-16 Score=167.93 Aligned_cols=239 Identities=12% Similarity=0.112 Sum_probs=170.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEc--cCCceeEEEEcCCCCCcEEEEEEcC----CCcceEEEEeC-CCCeEEEEecCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDV--VNYDMMLMIRLPFIPGAVEWVYKQG----DVKAGLAISDR-NSSFVHIYDARAD 73 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~--~~~~~~~~~~l~~~~~~v~~v~~s~----~~~~~~l~s~~-~d~~I~iwd~~~~ 73 (513)
++|||||++|++++.|++|++||+ .+++.+..+. +......+.++| +++ ++++++ .+++|.+||..
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~-- 256 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGE-- 256 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETT--
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEecc--
Confidence 469999999999999999999999 8888777665 345678999999 888 454444 58999999997
Q ss_pred CCcceEEeec----------CC-CCeEEEEEcCCCCE-EEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC
Q 010302 74 SNEPLISKKV----------HM-GPVKVMRYNPVFDT-VISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 141 (513)
Q Consensus 74 ~~~~i~~~~~----------h~-~~V~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (513)
+.+++.++.. |. ..+.++.++|++.. +++...++.|.+||..+.+.. .+..+ .+.
T Consensus 257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l------------~~~~i-~~~ 323 (543)
T 1nir_A 257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL------------TVTSI-GAA 323 (543)
T ss_dssp TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC------------EEEEE-ECC
T ss_pred ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc------------eeEEe-ccC
Confidence 8888888764 22 37899999997654 577788999999999774321 01122 345
Q ss_pred cceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCC
Q 010302 142 TTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA 220 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~ 220 (513)
..+.+++|+|+|++|++++ .+++|.+||..+++++.+++.... . .
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~--------------------------------p--h 369 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT--------------------------------P--H 369 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--------------------------------B--C
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC--------------------------------C--C
Confidence 6688899999999876555 689999999999999887752100 0 0
Q ss_pred CCCce-EEcCC-CCEEEEcc--ccceEEEEccc-------CcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccc
Q 010302 221 PPSNA-IFDES-SNFLIYAT--LLGIKIVNLHT-------NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 289 (513)
Q Consensus 221 ~~~~i-~fd~~-g~~li~~s--~~gi~v~d~~t-------~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (513)
+...+ .++|+ |++++++. ...|.+||..+ +++++++..+.+...++.++
T Consensus 370 ~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~-------------------- 429 (543)
T 1nir_A 370 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH-------------------- 429 (543)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC--------------------
T ss_pred CCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC--------------------
Confidence 00122 24666 56556554 35699999998 88888886554333333332
Q ss_pred cccCCCCCCCCeEEEeee-------cCceEEEEecCCCC
Q 010302 290 ANESKEPFSDPTLLCCAF-------KRHRIYLFSRREPE 321 (513)
Q Consensus 290 ~~~~~~~~~d~~l~~s~~-------~~~~i~i~~~~~~~ 321 (513)
+|+..+.++. .++.|.+|...+.+
T Consensus 430 --------pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 430 --------PKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp --------TTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred --------CCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 5555555555 26799999877543
No 168
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.77 E-value=2.5e-16 Score=154.03 Aligned_cols=246 Identities=10% Similarity=0.049 Sum_probs=161.9
Q ss_pred CeEecCCCEEEEEeC-CCcEEEEEccCCce-eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC-C--eEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSISN-DKSVKIYDVVNYDM-MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS-S--FVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s~-D~~v~iwd~~~~~~-~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d-~--~I~iwd~~~~~~ 75 (513)
++|+|||++|++++. ++.|.+||+.+++. ...+. .+......+.++|+++ .++++..+ + .|.+||+. ++
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~--~~ 118 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--EGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFL--KN 118 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE--ECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETT--TT
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc--cCCCCccceEECCCCC--EEEEecCCCCcccEEEEECC--CC
Confidence 479999997777665 89999999999887 54444 2333333388999998 45554444 3 89999997 77
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEE-EEEcCCCc-EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGI-IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 153 (513)
+.+..+..+ ....+++|+|+|+++ ++...++. +.+|++...... .+.. .........+.+++|+|||
T Consensus 119 ~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~-----~~~~-----~~~~~~~~~~~~~~~spdg 187 (331)
T 3u4y_A 119 KFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL-----FDTG-----QEFISGGTRPFNITFTPDG 187 (331)
T ss_dssp EEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE-----EEEE-----EEEECSSSSEEEEEECTTS
T ss_pred CeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE-----eecC-----CccccCCCCccceEECCCC
Confidence 777777644 456899999999855 45556688 999988652210 0000 1111334458999999999
Q ss_pred CEEEEEe-CCCcEEEEEcCCCeE---EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 154 KQFSITS-PDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 154 ~~l~s~s-~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
++++.++ .++.|++||+.+++. +..+.. ...+..++|+|
T Consensus 188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~sp 230 (331)
T 3u4y_A 188 NFAFVANLIGNSIGILETQNPENITLLNAVGT-------------------------------------NNLPGTIVVSR 230 (331)
T ss_dssp SEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-------------------------------------SSCCCCEEECT
T ss_pred CEEEEEeCCCCeEEEEECCCCcccceeeeccC-------------------------------------CCCCceEEECC
Confidence 9765554 689999999998876 444421 12346789999
Q ss_pred CCCEEEEccc--cceEEEEcccCcE--EEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 230 SSNFLIYATL--LGIKIVNLHTNKV--SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 230 ~g~~li~~s~--~gi~v~d~~t~~~--v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
+|++|+.++. ..|.+||+.++++ +..+... +..... +. .....+ .+.+....|+++
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~-~~-~~~~~~----------~~spdg~~l~v~ 290 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG--------LLIDPR-PL-FGANQM----------ALNKTETKLFIS 290 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC--------CCCCCG-GG-TTCCCE----------EECTTSSEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCceeeecccccc--------cccCCC-Cc-ccccce----------EECCCCCEEEEe
Confidence 9998776543 3599999999987 3333211 000000 00 000111 222344567788
Q ss_pred eecCceEEEEecCCC
Q 010302 306 AFKRHRIYLFSRREP 320 (513)
Q Consensus 306 ~~~~~~i~i~~~~~~ 320 (513)
+.+++.+++|.-..+
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 888899999986653
No 169
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.77 E-value=8.3e-17 Score=168.81 Aligned_cols=235 Identities=10% Similarity=0.068 Sum_probs=171.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec--CCCCCcceE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA--RADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~--~~~~~~~i~ 79 (513)
+|+|+++++++++.|++|.+||..+++.+..+... ..+..+.++|+++ ++++++.|++|.+||+ . +++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g---~~~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~--t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---YAVHISRMSASGR--YLLVIGRDARIDMIDLWAK--EPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS---TTEEEEEECTTSC--EEEEEETTSEEEEEETTSS--SCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC---cccceEEECCCCC--EEEEECCCCeEEEEECcCC--CCcEEE
Confidence 47889999999999999999999999988877632 2378899999999 7777778899999999 6 778888
Q ss_pred EeecCCCCeEEEEEcC----CCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCcccccccc----------C-Ccc
Q 010302 80 SKKVHMGPVKVMRYNP----VFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK----------S-KTT 143 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp----~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~ 143 (513)
++.. ...+..++|+| +|+++++++ .+++|.+||..++++ +..+.. | ...
T Consensus 217 ~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--------------~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 217 EIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--------------KQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp EEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--------------EEEEECCEECSSSCCEESCCC
T ss_pred EEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--------------ceeecccCcccCccccccCCc
Confidence 8874 45679999999 999998888 489999999987543 222221 2 337
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 144 VSAIEVSPDGKQF-SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 144 v~~v~~spdg~~l-~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
+.++.++|++..+ ++...+++|.+||+.+++.+.... + .....+
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~---------------------------------i--~~~~~~ 326 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS---------------------------------I--GAAPFL 326 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE---------------------------------E--ECCSSC
T ss_pred eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE---------------------------------e--ccCcCc
Confidence 8999999987754 566679999999998865432110 0 001235
Q ss_pred CceEEcCCCCEEEEcc--ccceEEEEcccCcEEEEeCCCCc--cchhheeccccCCcCCcceeeeeccccccccCCCCCC
Q 010302 223 SNAIFDESSNFLIYAT--LLGIKIVNLHTNKVSRILGKVEN--NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFS 298 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s--~~gi~v~d~~t~~~v~~~g~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (513)
..+.|+|+|++++.++ ...|.+||..+++++..+..... ..|...+ + .+.
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~--~------------------------~p~ 380 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF--V------------------------HPK 380 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE--E------------------------ETT
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc--C------------------------CCC
Confidence 5789999999877654 34699999999999887742110 0111111 0 023
Q ss_pred CCeEEEeee-cCceEEEEecCC
Q 010302 299 DPTLLCCAF-KRHRIYLFSRRE 319 (513)
Q Consensus 299 d~~l~~s~~-~~~~i~i~~~~~ 319 (513)
+..+++|+. .++.|.+|....
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCT
T ss_pred CccEEEeccCCCceEEEEEeCC
Confidence 366777775 788999997654
No 170
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.77 E-value=6.5e-18 Score=184.31 Aligned_cols=203 Identities=12% Similarity=0.054 Sum_probs=146.4
Q ss_pred CeEecCCCEEEEEeC-CC-----cEEEEEccCCceeEEEEcCCCC----------------------CcEEEEEEcCCCc
Q 010302 1 MQVSVDGLLCCSISN-DK-----SVKIYDVVNYDMMLMIRLPFIP----------------------GAVEWVYKQGDVK 52 (513)
Q Consensus 1 v~~s~dg~~las~s~-D~-----~v~iwd~~~~~~~~~~~l~~~~----------------------~~v~~v~~s~~~~ 52 (513)
++|||||++||+++. |+ +|++||+.+++.........+. ..+..+.|+|+++
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 479999999999998 88 8999999998877666543322 2367889999998
Q ss_pred ceEEEEeCCCCeEEEEecCCCCCc--ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecC
Q 010302 53 AGLAISDRNSSFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 130 (513)
Q Consensus 53 ~~~l~s~~~d~~I~iwd~~~~~~~--~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 130 (513)
.+++++. +.|++||+. ++. .+..+..|...+.+++|+|||++|+.++ ++.|.+||+.+++.
T Consensus 122 --~l~~~~~-~~i~~~d~~--~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~----------- 184 (741)
T 2ecf_A 122 --RLLFPLG-GELYLYDLK--QEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ----------- 184 (741)
T ss_dssp --EEEEEET-TEEEEEESS--SCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-----------
T ss_pred --EEEEEeC-CcEEEEECC--CCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-----------
Confidence 5555544 899999997 442 4455667888999999999999999887 45899999976432
Q ss_pred CccccccccCCc----------------ceEEEEEcCCCCEEEEEeCCC-------------------------------
Q 010302 131 DTNLFEILKSKT----------------TVSAIEVSPDGKQFSITSPDR------------------------------- 163 (513)
Q Consensus 131 ~~~~~~~~~~~~----------------~v~~v~~spdg~~l~s~s~D~------------------------------- 163 (513)
......+.. .+.+++|||||++|++++.|+
T Consensus 185 ---~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 185 ---MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp ---EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred ---EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 111111211 247799999999999988665
Q ss_pred --cEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc-
Q 010302 164 --RIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL- 239 (513)
Q Consensus 164 --~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~- 239 (513)
.|++||+.+ ++....... ......+..++| |+|++|++.+.
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~-pDg~~l~~~~~~ 306 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLG----------------------------------KEQDIYLARVNW-RDPQHLSFQRQS 306 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCC----------------------------------SCSSEEEEEEEE-EETTEEEEEEEE
T ss_pred eeEEEEEECCCCCceEEecCC----------------------------------CCcceEEEEEEe-CCCCEEEEEEec
Confidence 677777776 664332210 000112346889 99999997653
Q ss_pred -----cceEEEEcccCcEEEEeCC
Q 010302 240 -----LGIKIVNLHTNKVSRILGK 258 (513)
Q Consensus 240 -----~gi~v~d~~t~~~v~~~g~ 258 (513)
..|++||+.++++..++..
T Consensus 307 ~~~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp TTSSEEEEEEEETTTCCEEEEEEE
T ss_pred ccCCeEEEEEEECCCCceEEEEEc
Confidence 2499999999998877643
No 171
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=1.4e-16 Score=155.66 Aligned_cols=261 Identities=8% Similarity=-0.028 Sum_probs=172.2
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec-C--
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV-H-- 84 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~-h-- 84 (513)
++|++++.+++|++||+.+++....+.+......+..+.++|+++. +++++..++.|.+||+. +++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLV--TGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETT--TCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE-EEEEeCCCCeEEEEECC--CCCeEeeEEcCCcc
Confidence 5789999999999999999988877764421114677889999863 55677778999999997 7777776652 2
Q ss_pred --CCCeEEEEEcCCCCEEEEEc------------CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc
Q 010302 85 --MGPVKVMRYNPVFDTVISAD------------DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 150 (513)
Q Consensus 85 --~~~V~~l~~sp~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 150 (513)
...+.+++|+|+++++++++ .++.|.+||+.+++ .+..+. ....+.+++|+
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------------~~~~~~-~~~~~~~~~~s 143 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------------RRKAFE-APRQITMLAWA 143 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------------EEEEEE-CCSSCCCEEEC
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc--------------EEEEEe-CCCCcceeEEC
Confidence 22567899999999988886 57999999997633 222222 23457789999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccce-----------------------
Q 010302 151 PDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR----------------------- 207 (513)
Q Consensus 151 pdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r----------------------- 207 (513)
|||++|+++ ++.|++||+.+++.+..+...... ....++++..+.+.....+..
T Consensus 144 ~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 144 RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 999988877 689999999999998877643311 112333322111111111110
Q ss_pred eee---------eeeccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCc
Q 010302 208 MAV---------EKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK 278 (513)
Q Consensus 208 ~~~---------e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~ 278 (513)
+.+ ...+. .....+..++|+++|++|+++ ...|.+||+.+++.+..+.... .. ..+
T Consensus 221 v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~-~~--~~~---------- 285 (337)
T 1pby_B 221 LLTMDLETGEMAMREVR-IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPH-SY--YSV---------- 285 (337)
T ss_dssp EEEEETTTCCEEEEEEE-ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSS-CC--CEE----------
T ss_pred eEEEeCCCCCceEeecC-CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCC-ce--eeE----------
Confidence 000 00000 111234468999999998887 5679999999999887764322 11 111
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 010302 279 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
.+ .+|+..+.++..++.|++|..++.
T Consensus 286 -----~~-----------s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 286 -----NV-----------STDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp -----EE-----------CTTSCEEEEESBSSEEEEEETTTC
T ss_pred -----EE-----------CCCCCEEEEEcCCCcEEEEECcCC
Confidence 11 145554455577899999976543
No 172
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=1.1e-16 Score=157.33 Aligned_cols=235 Identities=10% Similarity=-0.003 Sum_probs=154.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++++++++++++++.+++|++||+.+++....+.+.. ...+..+.++++++. +++++..++.|.+||+. +++.+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~-~~v~~~~~~~i~~~d~~--t~~~~~~ 80 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLD--TCKNTFH 80 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSE-EEEEETTTTEEEEEETT--TTEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCCCCE-EEEEeCCCCcEEEEeCC--CCcEEEE
Confidence 4678899999999999999999999998877776432 114677889999863 55666788999999997 7777776
Q ss_pred eecCC------CCeEEEEEcCCCCEEEEEcCC------------CcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 81 KKVHM------GPVKVMRYNPVFDTVISADDK------------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 81 ~~~h~------~~V~~l~~sp~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
+..+. ..+.+++|+|+|+++++++.+ +.|.+||+.+++. ...+..+ .+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----------~~~~~~~-~~~~ 148 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----------AKPVRTF-PMPR 148 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----------BCCSEEE-ECCS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-----------cceeeec-cCCC
Confidence 65332 237889999999999888865 8999999876332 1111122 2334
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCc--ccccc----------ccc------
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL--YRLEA----------IDF------ 204 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~--~~l~~----------~~~------ 204 (513)
.+.+++|+|||+ +++++ +.|.+||..+++.+..+........ ....+..+ +.... ..+
T Consensus 149 ~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK-GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp SCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCT-TBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred cccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCc-cccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 688999999999 55554 3499999999998887653210000 00000000 00000 000
Q ss_pred ------cceeee----------eeeccccCCCCCCceEEcC-CCCEEEEccccceEEEEcccCcEEEEeC
Q 010302 205 ------GRRMAV----------EKEIEKTETAPPSNAIFDE-SSNFLIYATLLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 205 ------~~r~~~----------e~e~~~~~~~~~~~i~fd~-~g~~li~~s~~gi~v~d~~t~~~v~~~g 257 (513)
+....+ ..++. ........++|++ +|++++.+ ...|.+||+.+++.+..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~ 292 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFA-DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN 292 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE
T ss_pred CccccccceeEEEEeccCCcEEecccc-cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEc
Confidence 000000 00000 1122445788999 99998888 6679999999999887764
No 173
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=2.1e-16 Score=154.93 Aligned_cols=203 Identities=10% Similarity=0.064 Sum_probs=135.9
Q ss_pred CeEecCCCEEEEEeCC-CcEEEEEcc--CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC-CCc
Q 010302 1 MQVSVDGLLCCSISND-KSVKIYDVV--NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-SNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D-~~v~iwd~~--~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~-~~~ 76 (513)
++|+|+|++|++++.+ +.|++|++. +++......+..+ ..+..++|+++++. +++++..++.|.+||+..+ ..+
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCcccc
Confidence 4799999999998876 999999997 5554433333332 36788999999873 4455666899999999410 334
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCC-CCCCCcceeeeecCCcccc--cccc-CCcceEEEEEcC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHT-LQFPESEVSFRLKSDTNLF--EILK-SKTTVSAIEVSP 151 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~v~~v~~sp 151 (513)
.+..+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++. .... .+.. ....+.+++|+|
T Consensus 121 ~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 121 VVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL------------VAQDPAEVTTVEGAGPRHMVFHP 187 (343)
T ss_dssp EEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE------------EEEEEEEEECSTTCCEEEEEECT
T ss_pred ccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce------------eeecccccccCCCCCcceEEECC
Confidence 44444433 4588999999999887776 899999999865 321 1111 1122 334688999999
Q ss_pred CCCEEEEEe-CCCcEEEEEcCC--CeE--EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 152 DGKQFSITS-PDRRIRVFWFRT--GKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 152 dg~~l~s~s-~D~~I~iwd~~t--g~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
+++++++++ .++.|++|++.. ++. ...+.. +.. ..........++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~-----------------~~~-------------~~~~~~~~~~i~ 237 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM-----------------MPE-------------NFSDTRWAADIH 237 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC-----------------SCT-------------TCCSCCCEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc-----------------cCc-------------cccccCCccceE
Confidence 999776555 789999999953 433 111110 000 000011234689
Q ss_pred EcCCCCEEEEcc--ccceEEEEcc
Q 010302 227 FDESSNFLIYAT--LLGIKIVNLH 248 (513)
Q Consensus 227 fd~~g~~li~~s--~~gi~v~d~~ 248 (513)
|+++|++|+... ...|++||+.
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEecCCCEEEEEEEc
Confidence 999999887544 3459999998
No 174
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.75 E-value=6.1e-16 Score=152.40 Aligned_cols=203 Identities=8% Similarity=-0.007 Sum_probs=155.4
Q ss_pred CeEecCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCC-------CcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 1 MQVSVDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIP-------GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~-------~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
++|+|||++++.+ ..++.|.+||..+++....+...... .....+.++++++.+++.....++.|.+||+.
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~- 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG- 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-
Confidence 4789999965555 55899999999999988777753211 23788999999885444443568899999997
Q ss_pred CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc----cCCcceEEEE
Q 010302 73 DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL----KSKTTVSAIE 148 (513)
Q Consensus 73 ~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~ 148 (513)
+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++. +..+. ++...+.+++
T Consensus 173 -~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 173 -NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--------------LSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp -TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE--------------EEEEECCCSSSCCCEEEEE
T ss_pred -CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE--------------EEEEEcCCCCCCcccceEE
Confidence 7888888775666688999999999999999999999999977432 22222 2455688999
Q ss_pred EcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEE
Q 010302 149 VSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIF 227 (513)
Q Consensus 149 ~spdg~~l~s~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~f 227 (513)
|+|+|+++++++. ++.|.+||..+++.+..+.. .....++|
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------------------------------------~~~~~~~~ 279 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--------------------------------------PESLAVLF 279 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--------------------------------------SSCCCEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--------------------------------------CCCceEEE
Confidence 9999998776664 59999999999988776542 01236889
Q ss_pred cCCCCEEEEcc--ccceEEEEcccCcEEEEeC
Q 010302 228 DESSNFLIYAT--LLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 228 d~~g~~li~~s--~~gi~v~d~~t~~~v~~~g 257 (513)
+++|++++.+. ...|.+||..+++++..+.
T Consensus 280 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 280 NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999766554 3459999999999887764
No 175
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=6.7e-17 Score=154.43 Aligned_cols=199 Identities=11% Similarity=0.015 Sum_probs=139.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC-CceeEEEEcCCC-CCcEEEEEEcCCCcceEEEEeC--CCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN-YDMMLMIRLPFI-PGAVEWVYKQGDVKAGLAISDR--NSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~-~~~~~~~~l~~~-~~~v~~v~~s~~~~~~~l~s~~--~d~~I~iwd~~~~~~~ 76 (513)
++|||||++|++++ ++.|++||+.+ ++...... .+ ...+..+.|+|+++ .+++++ .++...||.+....++
T Consensus 47 ~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~ 121 (297)
T 2ojh_A 47 PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT 121 (297)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC
T ss_pred eEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc
Confidence 47999999999987 78999999998 77654432 33 35678899999998 444444 3445555554322333
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEE-EEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
...+..+ ..+.+++|+|++++|+ +++.++.+++|++... ......+..+...+.+++|+|+|++
T Consensus 122 -~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 122 -PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-------------SGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp -CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT-------------TCCEEECCCSSSCEEEEEECTTSSE
T ss_pred -eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC-------------CCcceEcccCCCccccceECCCCCE
Confidence 4455444 3589999999999886 7888999999975321 1223445567788999999999998
Q ss_pred EEEEe-CCCcEEEEEcC-CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 156 FSITS-PDRRIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 156 l~s~s-~D~~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
|+.++ .++.+++|++. ++..+..+..+ ......+.|+++|++
T Consensus 187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~s~dg~~ 230 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDGSSVERITDS------------------------------------AYGDWFPHPSPSGDK 230 (297)
T ss_dssp EEEEECTTSSCEEEEEETTSSCEEECCCC------------------------------------SEEEEEEEECTTSSE
T ss_pred EEEEecCCCCccEEEECCCCCCcEEEecC------------------------------------CcccCCeEECCCCCE
Confidence 88766 58999999886 34433333211 012245789999999
Q ss_pred EEEcccc------------ceEEEEcccCcEEEE
Q 010302 234 LIYATLL------------GIKIVNLHTNKVSRI 255 (513)
Q Consensus 234 li~~s~~------------gi~v~d~~t~~~v~~ 255 (513)
|++++.. .|.+||+.+++...+
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 9988653 389999988865443
No 176
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.74 E-value=1e-17 Score=182.11 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=138.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCC---cEEEEEEcCCCcceEEEEeCC---------CCeEEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPG---AVEWVYKQGDVKAGLAISDRN---------SSFVHIY 68 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~---~v~~v~~s~~~~~~~l~s~~~---------d~~I~iw 68 (513)
++|||||+++++ +.|++|++||+.+++....+. .+.. .+..++|||+++ .+++++. ++.+.+|
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCCSEEEEE
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEec--cccccccccceEEECCCCC--EEEEEecCccceeecceeeEEEE
Confidence 579999998876 789999999999988766554 3333 488999999999 5555544 3789999
Q ss_pred ecCCCCCcceEEee---cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc---
Q 010302 69 DARADSNEPLISKK---VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT--- 142 (513)
Q Consensus 69 d~~~~~~~~i~~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (513)
|+. +++. ..+. .|...+.+++|||||+.|+.++. +.|++||+.+++. ......+..
T Consensus 97 d~~--~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~--------------~~~~~~~~~~~~ 158 (723)
T 1xfd_A 97 KIP--HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA--------------IRVVSTGKEGVI 158 (723)
T ss_dssp ESS--SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC--------------EEEECCCBTTTE
T ss_pred ECC--CCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce--------------EEEecCCCCCce
Confidence 997 5444 3333 45555889999999999998886 7899999977432 111111111
Q ss_pred ---------------ceEEEEEcCCCCEEEEEeCC-CcEEEE---------------------------------EcCCC
Q 010302 143 ---------------TVSAIEVSPDGKQFSITSPD-RRIRVF---------------------------------WFRTG 173 (513)
Q Consensus 143 ---------------~v~~v~~spdg~~l~s~s~D-~~I~iw---------------------------------d~~tg 173 (513)
.+.+++|||||++|++++.| +.+++| |+.++
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 23789999999999988754 334444 44443
Q ss_pred eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc-----cceEEEEcc
Q 010302 174 KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-----LGIKIVNLH 248 (513)
Q Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~-----~gi~v~d~~ 248 (513)
+....+..+. .. .........+.|+|+|++|++.+. ..|++||+.
T Consensus 239 ~~~~~l~~~~-----------------------------~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 239 THDLEMMPPD-----------------------------DP-RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp CCCEECCCCC-----------------------------CG-GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred ceeEEeeCCc-----------------------------cC-CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence 3222221100 00 000112346899999998876643 248999999
Q ss_pred cCcEEEEeC
Q 010302 249 TNKVSRILG 257 (513)
Q Consensus 249 t~~~v~~~g 257 (513)
++++..++.
T Consensus 289 ~g~~~~~~~ 297 (723)
T 1xfd_A 289 TGVCTKKHE 297 (723)
T ss_dssp TCCEEEEEE
T ss_pred CCcceEEEE
Confidence 999877663
No 177
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.73 E-value=1.2e-15 Score=149.19 Aligned_cols=236 Identities=12% Similarity=0.125 Sum_probs=159.2
Q ss_pred eEecCCCE-EEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc-eE
Q 010302 2 QVSVDGLL-CCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP-LI 79 (513)
Q Consensus 2 ~~s~dg~~-las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~-i~ 79 (513)
.|++++++ +++++.+++|++||..+++....+.. +.... .+.++++++. +++++..++.|.+||+. +++. ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~-~~~~s~dg~~-l~~~~~~~~~i~~~d~~--~~~~~~~ 77 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL--GYDFV-DTAITSDCSN-VVVTSDFCQTLVQIETQ--LEPPKVV 77 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC--CCCEE-EEEECSSSCE-EEEEESTTCEEEEEECS--SSSCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc--cCCcc-eEEEcCCCCE-EEEEeCCCCeEEEEECC--CCceeEE
Confidence 35666555 77777899999999999988777663 34455 8999999873 55555668899999997 6666 67
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCC---cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKG---IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
.+..+..+..+++|+|++++++++..++ .|.+||+.+++ .+..+. +...+.+++|+|||+++
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~--------------~~~~~~-~~~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK--------------FISTIP-IPYDAVGIAISPNGNGL 142 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE--------------EEEEEE-CCTTEEEEEECTTSSCE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC--------------eEEEEE-CCCCccceEECCCCCEE
Confidence 7777777766699999999998555553 89999997733 233333 33457899999999865
Q ss_pred EEE-eCCCc-EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 157 SIT-SPDRR-IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 157 ~s~-s~D~~-I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
+++ ..++. |.+|++.....+..... ..+ .....+..++|+|+|+++
T Consensus 143 ~~~~~~~~~~i~~~~~~~~g~~~~~~~------------------------------~~~--~~~~~~~~~~~spdg~~l 190 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDADGVLFDTGQ------------------------------EFI--SGGTRPFNITFTPDGNFA 190 (331)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEE------------------------------EEE--CSSSSEEEEEECTTSSEE
T ss_pred EEEecCCCceEEEEEECCCCcEeecCC------------------------------ccc--cCCCCccceEECCCCCEE
Confidence 544 56688 99999876432211100 000 111234578999999977
Q ss_pred EEccc--cceEEEEcccCcE---EEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCe-EEEeeec
Q 010302 235 IYATL--LGIKIVNLHTNKV---SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT-LLCCAFK 308 (513)
Q Consensus 235 i~~s~--~gi~v~d~~t~~~---v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~ 308 (513)
+.... ..|++||+.+++. +..+.... ..+ .+.+ .+|+. |+++...
T Consensus 191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-~~~-----------------~~~~-----------spdg~~l~v~~~~ 241 (331)
T 3u4y_A 191 FVANLIGNSIGILETQNPENITLLNAVGTNN-LPG-----------------TIVV-----------SRDGSTVYVLTES 241 (331)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEECSS-CCC-----------------CEEE-----------CTTSSEEEEECSS
T ss_pred EEEeCCCCeEEEEECCCCcccceeeeccCCC-CCc-----------------eEEE-----------CCCCCEEEEEEcC
Confidence 66543 3599999999887 55553221 111 1111 14444 7777777
Q ss_pred CceEEEEecCC
Q 010302 309 RHRIYLFSRRE 319 (513)
Q Consensus 309 ~~~i~i~~~~~ 319 (513)
++.|++|..+.
T Consensus 242 ~~~i~~~d~~~ 252 (331)
T 3u4y_A 242 TVDVFNFNQLS 252 (331)
T ss_dssp EEEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 88999998654
No 178
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.71 E-value=6.2e-16 Score=151.09 Aligned_cols=211 Identities=10% Similarity=0.026 Sum_probs=150.7
Q ss_pred CeEecCCCEEE-EEeCCCcEEEEEccCCceeEEEEcCC---CCCcEEEEEEcCCCcceEEEEeC------------CCCe
Q 010302 1 MQVSVDGLLCC-SISNDKSVKIYDVVNYDMMLMIRLPF---IPGAVEWVYKQGDVKAGLAISDR------------NSSF 64 (513)
Q Consensus 1 v~~s~dg~~la-s~s~D~~v~iwd~~~~~~~~~~~l~~---~~~~v~~v~~s~~~~~~~l~s~~------------~d~~ 64 (513)
++|+|||++++ +++.++.|.+||+.+++....+.... +...+..+.++++++. ++.+. .++.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT--LAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE--EEEEEEEEEECSSCEEECCCE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE--EEEEecccccccccccccCce
Confidence 47999998764 55568899999999998877766432 1114567889999884 33332 4689
Q ss_pred EEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCC--------c--------------
Q 010302 65 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE--------S-------------- 122 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~--------~-------------- 122 (513)
|.+||+. +++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++... .
T Consensus 117 i~v~d~~--~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 117 VALYDAE--TLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp EEEEETT--TTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred EEEEECC--CCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence 9999997 6777777654 3457889999999988877 5789999987654310 0
Q ss_pred -----------------------------ceeeeecCCccc-cccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010302 123 -----------------------------EVSFRLKSDTNL-FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 123 -----------------------------~~~~~~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t 172 (513)
...++.+.++.. ..+..+...+.+++|+|||++++++ ++.|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 011222222111 1122344567789999999999887 79999999999
Q ss_pred CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCc
Q 010302 173 GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNK 251 (513)
Q Consensus 173 g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~ 251 (513)
++.+..+... ..+..++|+++|++|++++.. .|++||+.+++
T Consensus 270 ~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 270 NASIKRVPLP-------------------------------------HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp TEEEEEEECS-------------------------------------SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CcCcceecCC-------------------------------------CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 9887665321 134578999999988877554 49999999999
Q ss_pred EEEEeC
Q 010302 252 VSRILG 257 (513)
Q Consensus 252 ~v~~~g 257 (513)
.+..+.
T Consensus 313 ~~~~~~ 318 (337)
T 1pby_B 313 KKGQVD 318 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988774
No 179
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=1.9e-15 Score=149.12 Aligned_cols=205 Identities=8% Similarity=0.069 Sum_probs=132.4
Q ss_pred CeEecCCCEEEEEeC---CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC-CCCc
Q 010302 1 MQVSVDGLLCCSISN---DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA-DSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~---D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~-~~~~ 76 (513)
|+|||||+ |++++. ++.|++||+.+++......+..+...+.+++++|+++. +++++..++.|.+|++.. +..+
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~-l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQL-VYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTE-EEEEETTTTEEEEEEECTTSCEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCE-EEEEeCCCCEEEEEEeCCCCCee
Confidence 57999999 555543 68999999987765444333345567888999999983 344444789999999952 1122
Q ss_pred ceEEeec---------CCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC-CCCCCCcceeeeecCCcccccccc-CCcceE
Q 010302 77 PLISKKV---------HMGPVKVMRYNPVFDTVISADDKGIIEYWSPH-TLQFPESEVSFRLKSDTNLFEILK-SKTTVS 145 (513)
Q Consensus 77 ~i~~~~~---------h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 145 (513)
.+..+.. +...+.+++|+|+|+++++...++.|.+|++. ++++ .....+.. ....+.
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~------------~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL------------SEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE------------EEEEEEECCTTCCEE
T ss_pred ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE------------EEeeeEEcCCCCCCc
Confidence 3333321 12348899999999977777788999999987 3221 11111122 223578
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEEcCC--CeEEEE--ecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCC
Q 010302 146 AIEVSPDGKQFSIT-SPDRRIRVFWFRT--GKLRRV--YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA 220 (513)
Q Consensus 146 ~v~~spdg~~l~s~-s~D~~I~iwd~~t--g~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~ 220 (513)
.++|+|||++++++ ..++.|++|++.. ++.... +... +. + .....
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~----------~~----------~----------~~~~~ 240 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI----------PA----------D----------YTAHN 240 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS----------CT----------T----------CCSCC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec----------CC----------C----------CCCCC
Confidence 89999999976654 5688999999874 554221 1100 00 0 00001
Q ss_pred CCCceEEcCCCCEEEEcc--ccceEEEEccc
Q 010302 221 PPSNAIFDESSNFLIYAT--LLGIKIVNLHT 249 (513)
Q Consensus 221 ~~~~i~fd~~g~~li~~s--~~gi~v~d~~t 249 (513)
....++|+|+|++|+... ...|.+|++..
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 234689999999886543 34599999863
No 180
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.70 E-value=3e-16 Score=170.54 Aligned_cols=161 Identities=8% Similarity=-0.076 Sum_probs=114.6
Q ss_pred CeEecCCCEEEEEeCC---------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 1 MQVSVDGLLCCSISND---------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 1 v~~s~dg~~las~s~D---------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
++|||||++||+++.+ +.+.+||+.+++.........+...+..+.|||+++ .++.++. +.|++||+.
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~ 142 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHV 142 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECC
Confidence 4799999999999875 778899999887632222223333478899999998 4444443 689999997
Q ss_pred CCCCcceEEeecCCCCe------------------EEEEEcCCCCEEEEEcCCC--------------------------
Q 010302 72 ADSNEPLISKKVHMGPV------------------KVMRYNPVFDTVISADDKG-------------------------- 107 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V------------------~~l~~sp~~~~l~s~s~dg-------------------------- 107 (513)
+++.......+...+ .+++|+|||++|++++.|+
T Consensus 143 --~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 143 --GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp --SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred --CCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 566655555444333 7899999999998887543
Q ss_pred --------cEEEecCCCCCCCCcceeeeecCCcccccccc------CCcceEEEEEcCCCCEEEEEeC----CCcEEEEE
Q 010302 108 --------IIEYWSPHTLQFPESEVSFRLKSDTNLFEILK------SKTTVSAIEVSPDGKQFSITSP----DRRIRVFW 169 (513)
Q Consensus 108 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~v~~spdg~~l~s~s~----D~~I~iwd 169 (513)
.|.+||+.+. +....+.. +...+.+++|||||++|++.+. +..|++||
T Consensus 221 ~G~~~~~~~l~~~d~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGP--------------THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp TTSCCCEEEEEEEESSSS--------------CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCCC--------------ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 4566666543 32233332 3667999999999999877653 36799999
Q ss_pred cCCCeEEEEec
Q 010302 170 FRTGKLRRVYD 180 (513)
Q Consensus 170 ~~tg~~~~~~~ 180 (513)
+.++++...+.
T Consensus 287 ~~~g~~~~~~~ 297 (723)
T 1xfd_A 287 ATTGVCTKKHE 297 (723)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCcceEEEE
Confidence 99998766553
No 181
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=2.4e-15 Score=149.79 Aligned_cols=216 Identities=9% Similarity=0.045 Sum_probs=139.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC-------------CCCeEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR-------------NSSFVH 66 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-------------~d~~I~ 66 (513)
++|||||++|++++.+ +|.+|++. +++.......... +....+.++|+++.+++++++ .++.+.
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence 4789999999999888 99999997 7776544332211 224457889998854455553 688999
Q ss_pred EEecCCCCCcceEEee----cCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCC-CCCCCCcceeeeecCCccccccc--
Q 010302 67 IYDARADSNEPLISKK----VHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPH-TLQFPESEVSFRLKSDTNLFEIL-- 138 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~----~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-- 138 (513)
+|++.. +++....+. .+...+.+++|+|+|+++++++ .++.|++|++. ++++ ..+..+.
T Consensus 123 v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~------------~~~~~~~~~ 189 (365)
T 1jof_A 123 VFSVSE-TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------------ELVGSVDAP 189 (365)
T ss_dssp EEEECT-TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------------EEEEEEECS
T ss_pred EEccCC-CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE------------EEeeeEecC
Confidence 999962 244443333 2556799999999999887765 46789999986 4331 1111222
Q ss_pred cCCcceEEEEEcCCCCEEEEEeC-CCcEEEEEcC--CCeEEE---EecccHHHHHHHhcCCCCccccccccccceeeeee
Q 010302 139 KSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFR--TGKLRR---VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 212 (513)
Q Consensus 139 ~~~~~v~~v~~spdg~~l~s~s~-D~~I~iwd~~--tg~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~ 212 (513)
.|...+..++|+|||+++++++. ++.|.+|++. +|++.. .+.. +.....+.. .
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-----------------~~~~~~g~~----~ 248 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL-----------------IPPGIPDRD----P 248 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES-----------------SCTTCCCBC----T
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc-----------------CCCCcCCcc----c
Confidence 23566899999999999987774 7899999875 566532 1110 000000000 0
Q ss_pred eccccCCCCCCceE-EcCCCCEEEEccc--c-----ceEEEEcc-cCcEEE
Q 010302 213 EIEKTETAPPSNAI-FDESSNFLIYATL--L-----GIKIVNLH-TNKVSR 254 (513)
Q Consensus 213 e~~~~~~~~~~~i~-fd~~g~~li~~s~--~-----gi~v~d~~-t~~~v~ 254 (513)
.+ ........++ |+|+|++|+.++. . .|++|++. +|++..
T Consensus 249 ~~--~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 249 ET--GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp TT--SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred cc--ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 00 0000234688 9999998876542 2 59999996 677554
No 182
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.69 E-value=1.2e-16 Score=162.92 Aligned_cols=160 Identities=10% Similarity=0.010 Sum_probs=121.3
Q ss_pred CeEecCCCEEE----EEeCCCcEEEEEccCC--------ceeE-EEEcCCCCCcEEEEEEcCC-CcceEEEEeCCCCeEE
Q 010302 1 MQVSVDGLLCC----SISNDKSVKIYDVVNY--------DMML-MIRLPFIPGAVEWVYKQGD-VKAGLAISDRNSSFVH 66 (513)
Q Consensus 1 v~~s~dg~~la----s~s~D~~v~iwd~~~~--------~~~~-~~~l~~~~~~v~~v~~s~~-~~~~~l~s~~~d~~I~ 66 (513)
++|+|+|++|| +++.|++|+|||+.++ +.+. ...+..|...+..++|+|+ +. ++++++.|++|+
T Consensus 98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~ 175 (434)
T 2oit_A 98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIA 175 (434)
T ss_dssp EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEE
T ss_pred EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEE
Confidence 57999999999 7889999999999764 2222 2334568889999999998 55 889999999999
Q ss_pred EEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceE
Q 010302 67 IYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVS 145 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 145 (513)
+||++ ++..+....+|...|.+++|+|+|++|++|+.|++|++||++. +.. . .. ...... ..|...|.
T Consensus 176 iwD~~--~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~-~----~~---~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 176 VLQVT--ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEK-K----VI---PCPPFYESDHPVRVL 244 (434)
T ss_dssp EEEES--SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEE-E----EE---CCCTTCCTTSCEEEE
T ss_pred EEEcC--CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccc-c----cc---cCCcccCCCCceeEE
Confidence 99998 5666666668999999999999999999999999999999872 110 0 00 000001 12445899
Q ss_pred EEEEcCCCCEEEEEe-CCC------cEEEEEcCCC
Q 010302 146 AIEVSPDGKQFSITS-PDR------RIRVFWFRTG 173 (513)
Q Consensus 146 ~v~~spdg~~l~s~s-~D~------~I~iwd~~tg 173 (513)
+++|++++.++++.+ .|| .+++|++++.
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999998886543 443 3899998764
No 183
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=2e-15 Score=144.07 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=128.6
Q ss_pred EeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC-CcceEEeecC-CCCeEE
Q 010302 13 ISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-NEPLISKKVH-MGPVKV 90 (513)
Q Consensus 13 ~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-~~~i~~~~~h-~~~V~~ 90 (513)
.+.|++|++||+.+++...... +...+..+.|+|+++ ++++++ ++.|.+||+. + ++.......| ...+.+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~---~~~~v~~~~~spdg~--~l~~~~-~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQ---TPELFEAPNWSPDGK--YLLLNS-EGLLYRLSLA--GDPSPEKVDTGFATICNND 89 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEE---ESSCCEEEEECTTSS--EEEEEE-TTEEEEEESS--SCCSCEECCCTTCCCBCSC
T ss_pred CCcceeEEEEeCCCCceeeecc---CCcceEeeEECCCCC--EEEEEc-CCeEEEEeCC--CCCCceEeccccccccccc
Confidence 3578999999999887664443 678899999999998 666654 7799999997 5 5665555555 467889
Q ss_pred EEEcCCCCEEEEEc--CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE-EEeCCCcEEE
Q 010302 91 MRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS-ITSPDRRIRV 167 (513)
Q Consensus 91 l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~-s~s~D~~I~i 167 (513)
++|+|++++|++++ .++..+||.+... ......+..+ ..+..++|+||+++|+ +++.|+.++|
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPST-------------GGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETT-------------CCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECC-------------CCceEEeecC-CCccceEECCCCCEEEEEECCCCceEE
Confidence 99999999999988 4456666644221 0112233333 3488999999999887 6778999999
Q ss_pred EEcC--CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc--ccceE
Q 010302 168 FWFR--TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT--LLGIK 243 (513)
Q Consensus 168 wd~~--tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s--~~gi~ 243 (513)
|++. +++.. .+.. .......+.|+|+|++|++.+ ...++
T Consensus 156 ~~~~~~~~~~~-~~~~------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 198 (297)
T 2ojh_A 156 YSMDIDSGVET-RLTH------------------------------------GEGRNDGPDYSPDGRWIYFNSSRTGQMQ 198 (297)
T ss_dssp EEEETTTCCEE-ECCC------------------------------------SSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred EEEECCCCcce-Eccc------------------------------------CCCccccceECCCCCEEEEEecCCCCcc
Confidence 9864 33332 1111 012235789999999888765 34588
Q ss_pred EEEcc-cCcEEEEeC
Q 010302 244 IVNLH-TNKVSRILG 257 (513)
Q Consensus 244 v~d~~-t~~~v~~~g 257 (513)
+|++. .+..+..+.
T Consensus 199 i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 199 IWRVRVDGSSVERIT 213 (297)
T ss_dssp EEEEETTSSCEEECC
T ss_pred EEEECCCCCCcEEEe
Confidence 88876 444444443
No 184
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.69 E-value=2e-15 Score=163.72 Aligned_cols=204 Identities=10% Similarity=0.027 Sum_probs=140.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC-----C
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-----N 75 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~-----~ 75 (513)
++|||| ++++.+. |++|++||+.+++..... .+...+..++|+|+++ .++.. .++.|++||+. + +
T Consensus 87 ~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~--~~~~~~g 156 (706)
T 2z3z_A 87 TLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF---DTNEETASLDFSPVGD--RVAYV-RNHNLYIARGG--KLGEGMS 156 (706)
T ss_dssp EEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE---CCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECB--CTTSCCC
T ss_pred EEECCC-CeEEEEE-CCEEEEEECCCCceEEcc---CCcccccCCcCCCCCC--EEEEE-ECCeEEEEecC--cccccCC
Confidence 479999 6665554 599999999988765443 3456677889999998 45543 57899999997 5 5
Q ss_pred cceEEeecCCCC--------------eEEEEEcCCCCEEEEEc---------------------------------CCCc
Q 010302 76 EPLISKKVHMGP--------------VKVMRYNPVFDTVISAD---------------------------------DKGI 108 (513)
Q Consensus 76 ~~i~~~~~h~~~--------------V~~l~~sp~~~~l~s~s---------------------------------~dg~ 108 (513)
+.......+... +.+++|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 554433333332 48899999999999887 3467
Q ss_pred EEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCeEEEEecccH
Q 010302 109 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR-----RIRVFWFRTGKLRRVYDESL 183 (513)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~-----~I~iwd~~tg~~~~~~~~~~ 183 (513)
|.+||+.+++. ..+.....|...+.+++|||||++|++++.++ .|++||+.+++....+....
T Consensus 237 l~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~ 304 (706)
T 2z3z_A 237 VGIYHLATGKT------------VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET 304 (706)
T ss_dssp EEEEETTTTEE------------EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred EEEEECCCCce------------EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence 88888876331 11111124667899999999999999888765 89999999984333321100
Q ss_pred HHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC--CCCEEEEccccc-eEEEEcc-cCcEEEEeC
Q 010302 184 EVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--SSNFLIYATLLG-IKIVNLH-TNKVSRILG 257 (513)
Q Consensus 184 ~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~--~g~~li~~s~~g-i~v~d~~-t~~~v~~~g 257 (513)
..........++|+| +|++|+.++.++ +++|.+. +++.++.+.
T Consensus 305 -------------------------------~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 305 -------------------------------DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp -------------------------------CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred -------------------------------CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence 000001234678999 999888776655 7888776 666666664
No 185
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=4.2e-16 Score=165.27 Aligned_cols=233 Identities=14% Similarity=0.054 Sum_probs=149.1
Q ss_pred CeEecCCCEEEEEeC-CCcEEEEEccCCceeEEEEcCCCC-CcEEEEEEcCCCcceEEEEeCC---CCeEEEEecCCC-C
Q 010302 1 MQVSVDGLLCCSISN-DKSVKIYDVVNYDMMLMIRLPFIP-GAVEWVYKQGDVKAGLAISDRN---SSFVHIYDARAD-S 74 (513)
Q Consensus 1 v~~s~dg~~las~s~-D~~v~iwd~~~~~~~~~~~l~~~~-~~v~~v~~s~~~~~~~l~s~~~---d~~I~iwd~~~~-~ 74 (513)
++|||||++||+++. |++++||++.+++... +..+. ..+..+.|+|+ + ++++++. +....+|.+... .
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEEEEETTST
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC-e--EEEEeccCCCCcceEEEEEeccCC
Confidence 479999999999987 9999999997665432 33444 57889999988 4 5554443 555677666420 1
Q ss_pred CcceEEeecCCCCeEEEEEcCCCC--EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFD--TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
+... .+..+ ..+...+|+|+++ .+++++.++ +.+||+.+++ ...+..+.. .+++||||
T Consensus 101 g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~---------------~~~l~~~~~--~~~~~spD 160 (582)
T 3o4h_A 101 GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGG---------------LRELARLPG--FGFVSDIR 160 (582)
T ss_dssp TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTE---------------EEEEEEESS--CEEEEEEE
T ss_pred Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCc---------------EEEeecCCC--ceEEECCC
Confidence 2222 33322 2344678888875 345555554 5599886632 222222322 78999999
Q ss_pred CCEEEEEeCC----CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEc
Q 010302 153 GKQFSITSPD----RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 228 (513)
Q Consensus 153 g~~l~s~s~D----~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd 228 (513)
|++|++++.+ ..|++||+.+++.. .+..+. .....++|+
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~------------------------------------~~~~~~~~S 203 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE------------------------------------GSFSSASIS 203 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS------------------------------------CEEEEEEEC
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC------------------------------------CccccceEC
Confidence 9999988876 78999999988764 232210 112468999
Q ss_pred CCCCEEEEccccc---eEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEe
Q 010302 229 ESSNFLIYATLLG---IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 305 (513)
Q Consensus 229 ~~g~~li~~s~~g---i~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 305 (513)
|+|++|+.+...+ |++||+.+++.. .+..++....... . ..... ..| .+|+.++++
T Consensus 204 pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~--~-------~~~~~----------~~~-spdg~~~~~ 262 (582)
T 3o4h_A 204 PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR--P-------TAITW----------LGY-LPDGRLAVV 262 (582)
T ss_dssp TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC--C-------SEEEE----------EEE-CTTSCEEEE
T ss_pred CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh--h-------ccccc----------eeE-cCCCcEEEE
Confidence 9999999665554 899999999887 6554442222211 0 00000 001 155577777
Q ss_pred eecCceEEEEec
Q 010302 306 AFKRHRIYLFSR 317 (513)
Q Consensus 306 ~~~~~~i~i~~~ 317 (513)
+..++++.+|.-
T Consensus 263 ~~~~g~~~l~~~ 274 (582)
T 3o4h_A 263 ARREGRSAVFID 274 (582)
T ss_dssp EEETTEEEEEET
T ss_pred EEcCCcEEEEEE
Confidence 777777777765
No 186
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.68 E-value=2e-15 Score=164.62 Aligned_cols=202 Identities=12% Similarity=0.016 Sum_probs=141.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCC---ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNY---DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~---~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++|||||++|++++. ++|++||+.++ +.. .+..+...+..+.|+|+++ .++.++ ++.|++||+. +++.
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~--~g~~ 184 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLA--SGRQ 184 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETT--TTEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecC--CCCE
Confidence 579999999999986 89999999987 432 2345667899999999999 555544 4589999997 5555
Q ss_pred eEEeecCCCC----------------eEEEEEcCCCCEEEEEcCCC---------------------------------c
Q 010302 78 LISKKVHMGP----------------VKVMRYNPVFDTVISADDKG---------------------------------I 108 (513)
Q Consensus 78 i~~~~~h~~~----------------V~~l~~sp~~~~l~s~s~dg---------------------------------~ 108 (513)
......+... +.+++|+|||++|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 4433333332 47899999999999887665 6
Q ss_pred EEEecCCC-CCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCeEEEEeccc
Q 010302 109 IEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-----DRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 109 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~-----D~~I~iwd~~tg~~~~~~~~~ 182 (513)
|.+||+.+ ++. ..+.....|...+.+++| |||++|++++. +..|++||+.++++...+..+
T Consensus 265 l~~~d~~~~~~~------------~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 331 (741)
T 2ecf_A 265 LGVISPAEQAQT------------QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET 331 (741)
T ss_dssp EEEECSSTTCCC------------EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE
T ss_pred EEEEECCCCCce------------EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC
Confidence 77788765 432 111111146778999999 99999987663 568999999999887665432
Q ss_pred HHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc-eEEEEcc-cCcEEEEeC
Q 010302 183 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH-TNKVSRILG 257 (513)
Q Consensus 183 ~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g-i~v~d~~-t~~~v~~~g 257 (513)
.. ........++|+++|++++.++.++ +++|.+. +++ .+.+-
T Consensus 332 ~~--------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 332 SP--------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CS--------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred CC--------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 10 0000234678999999777766655 6777664 444 55553
No 187
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=4e-14 Score=140.38 Aligned_cols=213 Identities=11% Similarity=0.138 Sum_probs=132.5
Q ss_pred CeEecCCCEEEEEeCC----CcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISND----KSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D----~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
++|||||++|++++.+ +.|.+|++.. ++.........+......+++ +++ .++++...++.|.+|++.. .
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~-~ 130 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQ-D 130 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCT-T
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCC-C
Confidence 4799999999999886 7999998875 554443333334456677777 444 3566666789999999862 1
Q ss_pred Cc---ceEEee----------cCCCCeEEEEEcCCCCEEEE-EcCCCcEEEecCCCCCCCCc-c-eeeeecCCccccccc
Q 010302 75 NE---PLISKK----------VHMGPVKVMRYNPVFDTVIS-ADDKGIIEYWSPHTLQFPES-E-VSFRLKSDTNLFEIL 138 (513)
Q Consensus 75 ~~---~i~~~~----------~h~~~V~~l~~sp~~~~l~s-~s~dg~i~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~ 138 (513)
+. ....+. .+...+.+++|+|+|+++++ ...++.|.+|++........ . +... +.......
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~---~~~~~~~~ 207 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK---GTPEAFKV 207 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE---EEEEEEEC
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec---ccccceec
Confidence 11 111111 11234688999999996654 44688999998764220000 0 0000 00001112
Q ss_pred cCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc
Q 010302 139 KSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 217 (513)
Q Consensus 139 ~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~ 217 (513)
.+...+.+++|+|||+++++++ .++.|.+||+.++++........ ...
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~-------------------------------~~~ 256 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA-------------------------------DTV 256 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES-------------------------------CSS
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec-------------------------------CCC
Confidence 2345678999999999887777 68999999999876532211000 000
Q ss_pred CCCCCCceEEcCCCCEEEEcccc---ceEEEEcc--cCc
Q 010302 218 ETAPPSNAIFDESSNFLIYATLL---GIKIVNLH--TNK 251 (513)
Q Consensus 218 ~~~~~~~i~fd~~g~~li~~s~~---gi~v~d~~--t~~ 251 (513)
.......++|+|+|++|+.+... .|.+|++. +|+
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 01123478999999998765543 59999985 555
No 188
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.67 E-value=1.8e-14 Score=141.97 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=136.6
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEcc-CCceeEEEEcCC---------CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVV-NYDMMLMIRLPF---------IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~-~~~~~~~~~l~~---------~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd 69 (513)
++|+|||++|++++ .+++|++|++. ++.......+.. ....+..+.++|+++ +++++..++.|.+|+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEE
Confidence 57999999998888 68999999995 333322222211 123478899999998 778888889999999
Q ss_pred cCCCCCcc--eEEeec-CCCCeEEEEEcCCCCEEEE-EcCCCcEEEecCCC--CCCCCcceeeeecCCcccccccc----
Q 010302 70 ARADSNEP--LISKKV-HMGPVKVMRYNPVFDTVIS-ADDKGIIEYWSPHT--LQFPESEVSFRLKSDTNLFEILK---- 139 (513)
Q Consensus 70 ~~~~~~~~--i~~~~~-h~~~V~~l~~sp~~~~l~s-~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 139 (513)
+.. +++. +..+.. .......++|+|+|+++++ ...++.+.+|++.. +++ ..+..+..
T Consensus 169 ~~~-~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~------------~~~~~~~~~~~~ 235 (347)
T 3hfq_A 169 VSD-AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF------------TQLGIVKTIPAD 235 (347)
T ss_dssp ECT-TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE------------EEEEEEESSCTT
T ss_pred ECC-CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce------------EEeeeeeecCCC
Confidence 961 2322 222222 2236788999999996654 56788999998753 211 01111111
Q ss_pred --CCcceEEEEEcCCCCEE-EEEeCCCcEEEEEcCC-C--eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeee
Q 010302 140 --SKTTVSAIEVSPDGKQF-SITSPDRRIRVFWFRT-G--KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE 213 (513)
Q Consensus 140 --~~~~v~~v~~spdg~~l-~s~s~D~~I~iwd~~t-g--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e 213 (513)
....+..++|+|||++| ++...++.|.+|++.. + +.+..+..
T Consensus 236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------------------------------- 283 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-------------------------------- 283 (347)
T ss_dssp CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--------------------------------
T ss_pred CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--------------------------------
Confidence 12458899999999987 4555789999999863 2 22222211
Q ss_pred ccccCCCCCCceEEcCCCCEEEEcccc--ceEEE--EcccCcEEEE
Q 010302 214 IEKTETAPPSNAIFDESSNFLIYATLL--GIKIV--NLHTNKVSRI 255 (513)
Q Consensus 214 ~~~~~~~~~~~i~fd~~g~~li~~s~~--gi~v~--d~~t~~~v~~ 255 (513)
....+..++|+|+|++|++++.. .|.+| |..+|++..+
T Consensus 284 ----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 284 ----EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp ----SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred ----CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 11235688999999988887643 58999 5567876654
No 189
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.67 E-value=4.7e-15 Score=145.17 Aligned_cols=243 Identities=13% Similarity=0.138 Sum_probs=148.7
Q ss_pred CEEEEEeCCCcEEEEEcc-CCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-CCeEEEEecCCCCC--cceEEeec
Q 010302 8 LLCCSISNDKSVKIYDVV-NYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-SSFVHIYDARADSN--EPLISKKV 83 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~-~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-d~~I~iwd~~~~~~--~~i~~~~~ 83 (513)
.++++++.|+.|++||+. +++...... ..+...+..++|+|+++ .+++++. ++.|.+|++...++ +.+..+..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKR--YLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSS--EEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCC--EEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 345555789999999995 333222222 23556788899999988 4444444 59999999962223 34445554
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe-C
Q 010302 84 HMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-P 161 (513)
Q Consensus 84 h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s-~ 161 (513)
+. .+.+++|+|+++++++++ .++.|.+||+.++.. ...+..+. ....+.+++|+|+|+++++++ .
T Consensus 83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-----------VGVVDVVE-GLDGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-----------EEEEEEEC-CCTTBCCCEECTTSSEEEEEEGG
T ss_pred CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc-----------cccccccc-CCCCceEEEECCCCCEEEEecCC
Confidence 44 788999999999876655 588999998842110 11222222 334588999999999888877 8
Q ss_pred CCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc--
Q 010302 162 DRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-- 238 (513)
Q Consensus 162 D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s-- 238 (513)
++.|++||+.+ ++....... .+.......+..++|+|+|+++++.+
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPA-------------------------------EVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEE-------------------------------EEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEEEecCCCceeeeccc-------------------------------ccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 99999999987 655322100 00001112334689999999876654
Q ss_pred ccceEEEEcc--cCcEE--EEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 239 LLGIKIVNLH--TNKVS--RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 239 ~~gi~v~d~~--t~~~v--~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
...|++|++. +++.. ..+..-. .+......+..+. +.+....|++++..++.|++
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~i~----------~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMP-----------ENFSDTRWAADIH----------ITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSC-----------TTCCSCCCEEEEE----------ECTTSSEEEEEETTTTEEEE
T ss_pred CCEEEEEEecCCCCcEEEEeeccccC-----------ccccccCCccceE----------ECCCCCEEEEEecCCCEEEE
Confidence 3459999995 34431 1111000 0000011111222 22344467778888999999
Q ss_pred EecC
Q 010302 315 FSRR 318 (513)
Q Consensus 315 ~~~~ 318 (513)
|..+
T Consensus 258 ~d~~ 261 (343)
T 1ri6_A 258 FSVS 261 (343)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9865
No 190
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=8.9e-15 Score=143.65 Aligned_cols=210 Identities=13% Similarity=0.047 Sum_probs=142.0
Q ss_pred CeEecCCCEEE-EEeCCCcEEEEEccCCceeEEEEcCCC----CCcEEEEEEcCCCcceEEEEeCC------------CC
Q 010302 1 MQVSVDGLLCC-SISNDKSVKIYDVVNYDMMLMIRLPFI----PGAVEWVYKQGDVKAGLAISDRN------------SS 63 (513)
Q Consensus 1 v~~s~dg~~la-s~s~D~~v~iwd~~~~~~~~~~~l~~~----~~~v~~v~~s~~~~~~~l~s~~~------------d~ 63 (513)
++|+|||++++ +++.++.|.+||+.+++....+.+... ...+..+.++|+++ .+++++. ++
T Consensus 48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~ 125 (349)
T 1jmx_B 48 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPP 125 (349)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCC
T ss_pred eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCC
Confidence 47899998665 445789999999999888777664321 12366788999988 4444443 38
Q ss_pred eEEEEecCCCCC---cceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcce-e--------------
Q 010302 64 FVHIYDARADSN---EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV-S-------------- 125 (513)
Q Consensus 64 ~I~iwd~~~~~~---~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~-------------- 125 (513)
.|.+||+. ++ +.+..+.. ...+.+++|+|+++ ++.++. .|.+||+.+++.....- .
T Consensus 126 ~i~~~d~~--~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 126 RLEVFSTA--DGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp EEEEEEGG--GGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred eEEEEECC--CccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence 99999997 42 33344443 34688999999999 555544 49999998765321000 0
Q ss_pred --------------------------------------eeecCCc-cccccccCCcceEEEEEcC-CCCEEEEEeCCCcE
Q 010302 126 --------------------------------------FRLKSDT-NLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRI 165 (513)
Q Consensus 126 --------------------------------------~~~~~~~-~~~~~~~~~~~v~~v~~sp-dg~~l~s~s~D~~I 165 (513)
++...++ ....+..+...+.+++|+| ||++++++ ++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence 0000000 0000111233577889999 99999887 8899
Q ss_pred EEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEE
Q 010302 166 RVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKI 244 (513)
Q Consensus 166 ~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v 244 (513)
.+||+.+++.+..+.. ...+..++|+++|++|+.+... .|++
T Consensus 278 ~~~d~~~~~~~~~~~~-------------------------------------~~~~~~~~~s~dg~~l~~~~~~~~v~v 320 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANL-------------------------------------DHTYYCVAFDKKGDKLYLGGTFNDLAV 320 (349)
T ss_dssp EEEETTTTEEEEEEEC-------------------------------------SSCCCEEEECSSSSCEEEESBSSEEEE
T ss_pred EEEECccCeEEEEEcC-------------------------------------CCCccceEECCCCCEEEEecCCCeEEE
Confidence 9999999998776531 0123578999999988776544 5999
Q ss_pred EEcccCcEEEEeC
Q 010302 245 VNLHTNKVSRILG 257 (513)
Q Consensus 245 ~d~~t~~~v~~~g 257 (513)
||..+++++..+.
T Consensus 321 ~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 321 FNPDTLEKVKNIK 333 (349)
T ss_dssp EETTTTEEEEEEE
T ss_pred Eeccccceeeeee
Confidence 9999999988774
No 191
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.64 E-value=4e-15 Score=168.50 Aligned_cols=169 Identities=15% Similarity=0.036 Sum_probs=129.4
Q ss_pred CeEe-cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCC-cEEEEEEcCCCcceEEEEeCCCCeEE-EEecCCCCCcc
Q 010302 1 MQVS-VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPG-AVEWVYKQGDVKAGLAISDRNSSFVH-IYDARADSNEP 77 (513)
Q Consensus 1 v~~s-~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~-~v~~v~~s~~~~~~~l~s~~~d~~I~-iwd~~~~~~~~ 77 (513)
++|| |||++||+++ ++.|.+|++.+++... +..+.. .+..+.|+ ++. .++.++.+..+. +||+. .++
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~s-dg~--~l~~~s~~~~l~~~~d~~--~~~- 370 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGD-TKV--AFIHGTREGDFLGIYDYR--TGK- 370 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSS-SEE--EEEEEETTEEEEEEEETT--TCC-
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCceEE---ccCCCcceEEeeeEc-CCC--eEEEEECCCceEEEEECC--CCC-
Confidence 4799 9999999988 7899999998776432 445666 78899999 777 444545577888 89986 433
Q ss_pred eEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEE
Q 010302 78 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 78 i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 157 (513)
...+..|...+.+++|+|+|++|++++.++.|++||+.+++ ....+..|...+.+++|||||++|+
T Consensus 371 ~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~--------------~~~~~~~~~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 371 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK--------------PTVIERSREAMITDFTISDNSRFIA 436 (1045)
T ss_dssp EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEEECSSSCCCCEEECTTSCEEE
T ss_pred ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc--------------eEEeccCCCCCccceEECCCCCeEE
Confidence 34455788899999999999999999999999999997743 3333446888899999999999999
Q ss_pred EEeCCC----------cEEEEEcCCCeEEEEecccHHHHHHHhcCCC
Q 010302 158 ITSPDR----------RIRVFWFRTGKLRRVYDESLEVAQDLQRSDA 194 (513)
Q Consensus 158 s~s~D~----------~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~ 194 (513)
+++.++ .|++||+.+++ +..+..+......+.++++
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT
T ss_pred EEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC
Confidence 887644 89999999988 5555554433333445554
No 192
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.64 E-value=3.9e-15 Score=161.43 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=134.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccC-----CceeEEEEcCCCCCc--------------EEEEEEcCCCcceEEEEeC-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVN-----YDMMLMIRLPFIPGA--------------VEWVYKQGDVKAGLAISDR- 60 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~-----~~~~~~~~l~~~~~~--------------v~~v~~s~~~~~~~l~s~~- 60 (513)
++|||||++||++ .|+.|++||+.+ ++...... .+... +..+.|+|+++ .+++++
T Consensus 126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~--~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~--~la~~~~ 200 (706)
T 2z3z_A 126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI--DGTETLVYGQAVHQREFGIEKGTFWSPKGS--CLAFYRM 200 (706)
T ss_dssp CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS--CCBTTEEESSCCGGGCTTCCCSEEECTTSS--EEEEEEE
T ss_pred CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc--CCCCCeEcccchhhhhcCCCceEEECCCCC--EEEEEEE
Confidence 5799999999985 689999999998 76544322 12221 47889999999 444443
Q ss_pred --------------------------------CCCeEEEEecCCCCCcceEEee--cCCCCeEEEEEcCCCCEEEEEcCC
Q 010302 61 --------------------------------NSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDK 106 (513)
Q Consensus 61 --------------------------------~d~~I~iwd~~~~~~~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~d 106 (513)
.+..|.+||+. +++...... .|...+.+++|+|+|+.|++++.+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA--TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT--TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC--CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence 45679999997 554433322 566789999999999999887766
Q ss_pred C-----cEEEecCCCCCCCCcceeeeecCCccccccc--cCCc---ceEEEEEcC--CCCEEEEEeCCCcEEEEEcC-CC
Q 010302 107 G-----IIEYWSPHTLQFPESEVSFRLKSDTNLFEIL--KSKT---TVSAIEVSP--DGKQFSITSPDRRIRVFWFR-TG 173 (513)
Q Consensus 107 g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~v~~v~~sp--dg~~l~s~s~D~~I~iwd~~-tg 173 (513)
+ .|.+||+.+++. ...+. .+.. .+.+++|+| ||+++++++.|+.++||++. ++
T Consensus 279 ~~~~~~~v~~~d~~~g~~--------------~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRF--------------VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp TTSCEEEEEEEETTTCCE--------------EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCCCeeEEEEEECCCCce--------------eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 5 899999977421 11111 1222 246789999 99999999999999999886 56
Q ss_pred eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCc-eEEcCCCCEEEEcccc------ceEEEE
Q 010302 174 KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSN-AIFDESSNFLIYATLL------GIKIVN 246 (513)
Q Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~-i~fd~~g~~li~~s~~------gi~v~d 246 (513)
+.+..+..+ ...... ++|+++|+.|++.+.. .|..||
T Consensus 345 ~~~~~l~~~------------------------------------~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 345 RLIRQVTKG------------------------------------EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CEEEECCCS------------------------------------SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred CEEEecCCC------------------------------------CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 665554321 011223 6899999988876543 355566
Q ss_pred cccCc
Q 010302 247 LHTNK 251 (513)
Q Consensus 247 ~~t~~ 251 (513)
..+++
T Consensus 389 ~~~~~ 393 (706)
T 2z3z_A 389 IKGGK 393 (706)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 66665
No 193
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=1.1e-13 Score=135.77 Aligned_cols=241 Identities=13% Similarity=0.102 Sum_probs=167.2
Q ss_pred CeEecCCCEEEEEeCC------------------------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEE
Q 010302 1 MQVSVDGLLCCSISND------------------------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLA 56 (513)
Q Consensus 1 v~~s~dg~~las~s~D------------------------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l 56 (513)
|+++|+|+++++.+.+ ++|.+||..+++...... ..+-.....+++++++. ++
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~g~--l~ 105 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTDGN--YW 105 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTTSC--EE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCCCC--EE
Confidence 5789999999988877 479999999888765432 23334688999999888 88
Q ss_pred EEeCCCCeEEEEecCCCCCcceEEe---------ecCCCCeEEEEEcC-CCCEEEEEc-CCCcEEEecCCCCCCCCccee
Q 010302 57 ISDRNSSFVHIYDARADSNEPLISK---------KVHMGPVKVMRYNP-VFDTVISAD-DKGIIEYWSPHTLQFPESEVS 125 (513)
Q Consensus 57 ~s~~~d~~I~iwd~~~~~~~~i~~~---------~~h~~~V~~l~~sp-~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 125 (513)
++...++.|++||.. +....+..+ ..+......++++| +++++++.+ .++.|++|+. +++
T Consensus 106 v~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~------- 176 (329)
T 3fvz_A 106 VTDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK------- 176 (329)
T ss_dssp EEETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC-------
T ss_pred EEECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC-------
Confidence 888889999999984 111255655 24455789999999 888888886 6899999984 322
Q ss_pred eeecCCccccccc----------cCCcceEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCC
Q 010302 126 FRLKSDTNLFEIL----------KSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA 194 (513)
Q Consensus 126 ~~~~~~~~~~~~~----------~~~~~v~~v~~spd-g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~ 194 (513)
.+..+. .+-..+..++++|+ ++.+++...++.|++||..+|+.+..+....
T Consensus 177 -------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~----------- 238 (329)
T 3fvz_A 177 -------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS----------- 238 (329)
T ss_dssp -------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-----------
T ss_pred -------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-----------
Confidence 122221 12234899999999 7777777789999999999999988774310
Q ss_pred CccccccccccceeeeeeeccccCCCCCCceEEcC------CCCEEEEccc-cceEEEEcccCcEEEEeCCCCccchhhe
Q 010302 195 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE------SSNFLIYATL-LGIKIVNLHTNKVSRILGKVENNDRFLR 267 (513)
Q Consensus 195 ~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~------~g~~li~~s~-~gi~v~d~~t~~~v~~~g~~~~~~r~~~ 267 (513)
.+ ..+..++|+| +|+..+.... ..|++||..+|+++..++......
T Consensus 239 ---------~~--------------~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~---- 291 (329)
T 3fvz_A 239 ---------FG--------------RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF---- 291 (329)
T ss_dssp ---------TT--------------TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC----
T ss_pred ---------cC--------------CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc----
Confidence 00 0112334444 5553333222 259999999999999986322110
Q ss_pred eccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 268 IALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.....+.+ .+|+.|+++...+++|++|....
T Consensus 292 ----------~~p~~ia~-----------~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 292 ----------DMPHDIVA-----------SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ----------SSEEEEEE-----------CTTSEEEEEESSSCCEEEEEEEE
T ss_pred ----------CCeeEEEE-----------CCCCCEEEEECCCCEEEEEeCCc
Confidence 11122222 26779999999999999998664
No 194
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.63 E-value=9.6e-15 Score=165.41 Aligned_cols=192 Identities=14% Similarity=0.056 Sum_probs=146.4
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC-----------CCCcEEEEEEc-CCCcceEEEEeCCCCeEEEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF-----------IPGAVEWVYKQ-GDVKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~-----------~~~~v~~v~~s-~~~~~~~l~s~~~d~~I~iwd 69 (513)
+|||||++||+++ ++.|++||+..... . .+.. +...+..+.|+ |+++. ++.++ ++.|.+|+
T Consensus 251 ~~SpDG~~la~~~-~~~i~~~d~~~~~l-~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~--la~~~-~~~i~~~~ 323 (1045)
T 1k32_A 251 HLNTDGRRILFSK-GGSIYIFNPDTEKI-E--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL--IAFVS-RGQAFIQD 323 (1045)
T ss_dssp EEEESSSCEEEEE-TTEEEEECTTTCCE-E--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC--EEEEE-TTEEEEEC
T ss_pred eEcCCCCEEEEEe-CCEEEEecCCceEe-e--eeccCcccccccccccccccceeeecCCCCCE--EEEEE-cCEEEEEc
Confidence 6899999999875 89999999954433 2 2322 22357889999 99984 44433 77899999
Q ss_pred cCCCCCcceEEeecCCC-CeEEEEEcCCCCEEEEEcCCCcEE-EecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 70 ARADSNEPLISKKVHMG-PVKVMRYNPVFDTVISADDKGIIE-YWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 70 ~~~~~~~~i~~~~~h~~-~V~~l~~sp~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
+. .++ ...+..|.. .+.+++|+ +|+.|++++.+..+. +||+.+.+ ...+..|...+.++
T Consensus 324 ~~--~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---------------~~~l~~~~~~~~~~ 384 (1045)
T 1k32_A 324 VS--GTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---------------AEKFEENLGNVFAM 384 (1045)
T ss_dssp TT--SSB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---------------EEECCCCCCSEEEE
T ss_pred CC--CCc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---------------ceEecCCccceeee
Confidence 86 444 445667777 89999999 999999988887788 88886532 22333677889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEE
Q 010302 148 EVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIF 227 (513)
Q Consensus 148 ~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~f 227 (513)
+|||||++|++++.++.|++||+.+++....+.++ ......++|
T Consensus 385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~------------------------------------~~~v~~~~~ 428 (1045)
T 1k32_A 385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR------------------------------------EAMITDFTI 428 (1045)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS------------------------------------SSCCCCEEE
T ss_pred EECCCCCEEEEECCCCeEEEEECCCCceEEeccCC------------------------------------CCCccceEE
Confidence 99999999999999999999999999886655321 123457899
Q ss_pred cCCCCEEEEcccc-----------ceEEEEcccCcEEEE
Q 010302 228 DESSNFLIYATLL-----------GIKIVNLHTNKVSRI 255 (513)
Q Consensus 228 d~~g~~li~~s~~-----------gi~v~d~~t~~~v~~ 255 (513)
+|+|++|++++.. .|++||+.+++....
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 9999999987642 599999999884333
No 195
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=3.2e-13 Score=129.23 Aligned_cols=233 Identities=11% Similarity=0.116 Sum_probs=160.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC----CCCCcEEEEEEc-CCCcceEEEEeCC-CCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP----FIPGAVEWVYKQ-GDVKAGLAISDRN-SSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~----~~~~~v~~v~~s-~~~~~~~l~s~~~-d~~I~iwd~~~~~ 74 (513)
|+++++|+++++.+.++.|.+||.. ++....+... .+...+..+++. +++. ++++... ++.|.+||. +
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~~~d~---~ 108 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQIYNQ---Y 108 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEEEECT---T
T ss_pred EEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEEEECC---C
Confidence 4688999999988889999999987 4554444321 123467888884 5555 6666643 789999995 5
Q ss_pred CcceEEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc--cCCcceEEEEEcC
Q 010302 75 NEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL--KSKTTVSAIEVSP 151 (513)
Q Consensus 75 ~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp 151 (513)
++.+..+. .+...+.+++++|+++++++...++.|.+||... +.+..+. .+...+.+++++|
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---------------~~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---------------NVLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---------------CEEEEEECTTTCSSEEEEEECS
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---------------CEEEEeCCCCccCCcEEEEECC
Confidence 66666664 3446789999999999888888889999998643 1122221 3445689999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 152 DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 152 dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
+|+.+++.+.++.|++||. +++.+..+.... ....+..+++|++|
T Consensus 174 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g----------------------------------~~~~p~~i~~d~~G 218 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEG----------------------------------ITNYPIGVGINSNG 218 (286)
T ss_dssp SSEEEEEEGGGTEEEEEET-TCCEEEEESCTT----------------------------------TSCSEEEEEECTTC
T ss_pred CCCEEEEECCCCEEEEEcC-CCCEEEEEccCC----------------------------------ccCCCcEEEECCCC
Confidence 9998888888999999997 555555553210 00133578999999
Q ss_pred CEEEEcccc--ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 010302 232 NFLIYATLL--GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 309 (513)
Q Consensus 232 ~~li~~s~~--gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~ 309 (513)
++++..... .|++||. +++.+..+..+..... ...+.+ .+|+.|+++. .+
T Consensus 219 ~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~---------------~~~i~~-----------~~~g~l~vs~-~~ 270 (286)
T 1q7f_A 219 EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ---------------CFDVAL-----------MDDGSVVLAS-KD 270 (286)
T ss_dssp CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC---------------EEEEEE-----------ETTTEEEEEE-TT
T ss_pred CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc---------------ceeEEE-----------CCCCcEEEEC-CC
Confidence 988877654 7999996 5666666643221101 111222 2567788874 58
Q ss_pred ceEEEEec
Q 010302 310 HRIYLFSR 317 (513)
Q Consensus 310 ~~i~i~~~ 317 (513)
++|++|.-
T Consensus 271 ~~v~v~~~ 278 (286)
T 1q7f_A 271 YRLYIYRY 278 (286)
T ss_dssp TEEEEEEC
T ss_pred CeEEEEEc
Confidence 99999964
No 196
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.59 E-value=2.8e-14 Score=151.21 Aligned_cols=197 Identities=10% Similarity=-0.044 Sum_probs=136.7
Q ss_pred eEecCCCEEEEEeC---CCcEEEEEccC--CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 2 QVSVDGLLCCSISN---DKSVKIYDVVN--YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 2 ~~s~dg~~las~s~---D~~v~iwd~~~--~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
+|||| +++++++. +...+||.+.. ..... .+.... ......|+++++..++++++.++.. +||+. +++
T Consensus 71 ~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~--~g~ 143 (582)
T 3o4h_A 71 HYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALD--GGG 143 (582)
T ss_dssp CTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEE--TTE
T ss_pred cCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc--cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEcc--CCc
Confidence 68999 78887775 56667766643 22112 222222 3446688999987778887776655 99997 555
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCC----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
...... +.. .+++|+|||++|++++.+ ..|++||+.+++ ...+..|...+..++||||
T Consensus 144 ~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---------------~~~l~~~~~~~~~~~~SpD 205 (582)
T 3o4h_A 144 LRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---------------LRVFDSGEGSFSSASISPG 205 (582)
T ss_dssp EEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---------------CEEECCSSCEEEEEEECTT
T ss_pred EEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---------------ceEeecCCCccccceECCC
Confidence 444333 333 789999999999988776 779999987643 3356678888999999999
Q ss_pred CCEEEEEeCCC--cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 153 GKQFSITSPDR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 153 g~~l~s~s~D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
|++|+++..++ .|++||+.+++.. .+.++...+....- ......+|+|+
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~~~~spd 256 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP----------------------------TAITWLGYLPD 256 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC----------------------------SEEEEEEECTT
T ss_pred CCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh----------------------------ccccceeEcCC
Confidence 99999888888 8999999999887 55544333222210 00123459999
Q ss_pred CCEEEEccccc-eEEEEcccCcEEE
Q 010302 231 SNFLIYATLLG-IKIVNLHTNKVSR 254 (513)
Q Consensus 231 g~~li~~s~~g-i~v~d~~t~~~v~ 254 (513)
|++++.++.++ +++|++ |++..
T Consensus 257 g~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 257 GRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp SCEEEEEEETTEEEEEET--TEEEC
T ss_pred CcEEEEEEcCCcEEEEEE--CCeec
Confidence 97777666554 899999 66554
No 197
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=163.82 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=99.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCC---cEEEEEEcCCCcceEEEEeCC---------CCeEEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPG---AVEWVYKQGDVKAGLAISDRN---------SSFVHIY 68 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~---~v~~v~~s~~~~~~~l~s~~~---------d~~I~iw 68 (513)
++|+|||+++++ +.|++|++||+.+++....+. .+.. .+..+.|||+++ .++.++. ++.|++|
T Consensus 21 ~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 21 PNWISGQEYLHQ-SADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CEESSSSEEEEE-CTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEEEEEE
T ss_pred cEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECCCCC--eEEEEecCceeEEeecceEEEEE
Confidence 479999976654 569999999999988765554 2211 378999999999 4444433 6899999
Q ss_pred ecCCCCCcce--EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce--
Q 010302 69 DARADSNEPL--ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV-- 144 (513)
Q Consensus 69 d~~~~~~~~i--~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-- 144 (513)
|+. +++.+ ..+ ...+.+++|||||+.|+.++ ++.|++||+.+++.... . ..+.....+.++..++
T Consensus 96 d~~--~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~---~~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 96 DLS--NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--T---FNGRENKIFNGIPDWVYE 164 (719)
T ss_dssp ETT--TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--C---CCCBTTTEEESSCCHHHH
T ss_pred ECC--CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--e---cCCCcCCeEcccccceee
Confidence 997 55442 122 25688999999999999886 77999999977542100 0 0011011111222222
Q ss_pred -------EEEEEcCCCCEEEEEeCC
Q 010302 145 -------SAIEVSPDGKQFSITSPD 162 (513)
Q Consensus 145 -------~~v~~spdg~~l~s~s~D 162 (513)
.+++|||||++|++++.|
T Consensus 165 ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 165 EEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp HHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred eecccCcccEEECCCCCEEEEEEEC
Confidence 589999999999998855
No 198
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.58 E-value=6.3e-14 Score=152.85 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=105.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCC-----cEEEEEEcCCCcceEEEEeCCC---------CeEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPG-----AVEWVYKQGDVKAGLAISDRNS---------SFVH 66 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~-----~v~~v~~s~~~~~~~l~s~~~d---------~~I~ 66 (513)
++|+|||++++++ |++|++||+.+++....+. .+.. ....+.|||+++ .++.++.+ +.+.
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSS--EEEEEEEEEECSSSCEEEEEE
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCC--EEEEEECCeeeEEEccceEEE
Confidence 4799999999986 9999999999998766544 3321 223478999999 44444443 5678
Q ss_pred EEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc----
Q 010302 67 IYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT---- 142 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 142 (513)
+||+. +++. ..+..|...+...+|||||+.|+.++ ++.|++||+.+++.... .. .+.....+.++..
T Consensus 96 ~~d~~--~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l--t~---~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 96 IYDLN--KRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI--TW---TGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEETT--TTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CS---CCBTTTEEESBCCHHHH
T ss_pred EEECC--CCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE--cC---CCCccceecCccccccc
Confidence 99997 5543 34667788899999999999998885 67899999877542100 00 0111111112221
Q ss_pred -----ceEEEEEcCCCCEEEEEeCCC-cEEEEEc
Q 010302 143 -----TVSAIEVSPDGKQFSITSPDR-RIRVFWF 170 (513)
Q Consensus 143 -----~v~~v~~spdg~~l~s~s~D~-~I~iwd~ 170 (513)
...++.|||||++||..+.|. .+++|++
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 123589999999999887544 3777765
No 199
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=157.12 Aligned_cols=161 Identities=11% Similarity=0.015 Sum_probs=107.4
Q ss_pred CeEecCCCEEEEEeC---------CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 1 MQVSVDGLLCCSISN---------DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 1 v~~s~dg~~las~s~---------D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
++|||||++||+++. |++|++||+.+++.+....+ ...+..+.|||+++. ++.+. ++.|++||+.
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRP 138 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTC--EEEEE-TTEEEEESST
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCE--EEEEE-CCeEEEEeCC
Confidence 479999999999886 78999999998876211122 245788999999994 44443 6799999997
Q ss_pred CCCCcceEEe-ecCCCCe-----------------EEEEEcCCCCEEEEEcCCC--------------------------
Q 010302 72 ADSNEPLISK-KVHMGPV-----------------KVMRYNPVFDTVISADDKG-------------------------- 107 (513)
Q Consensus 72 ~~~~~~i~~~-~~h~~~V-----------------~~l~~sp~~~~l~s~s~dg-------------------------- 107 (513)
+++..... .++...| .+++|||||++|++++.|.
T Consensus 139 --~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 139 --GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp --TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred --CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 55544322 2333323 4899999999999887552
Q ss_pred --------cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC----CcEEEEE----cC
Q 010302 108 --------IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD----RRIRVFW----FR 171 (513)
Q Consensus 108 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D----~~I~iwd----~~ 171 (513)
.|++||+.+++.... ... .....+..|...+.+++||||++.+++.... ..|.+|| +.
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGP---QEV---PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCC---EEC---CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred CCCCCCeeEEEEEECCCCCccce---eEc---cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 566777755221000 000 0002344688889999999998877764422 2488888 77
Q ss_pred CCeE
Q 010302 172 TGKL 175 (513)
Q Consensus 172 tg~~ 175 (513)
++++
T Consensus 291 ~g~~ 294 (719)
T 1z68_A 291 TWDC 294 (719)
T ss_dssp SEEC
T ss_pred CCce
Confidence 7664
No 200
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.52 E-value=1.4e-12 Score=129.22 Aligned_cols=206 Identities=17% Similarity=0.160 Sum_probs=132.9
Q ss_pred cCCCEEEEEe-CCCcEEEEEccCCcee----EEEEcCC--------CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 5 VDGLLCCSIS-NDKSVKIYDVVNYDMM----LMIRLPF--------IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 5 ~dg~~las~s-~D~~v~iwd~~~~~~~----~~~~l~~--------~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
.+|++|++++ .+++|.+|++.....+ ....... +..++..+.|+|+++. +++++..++.|.+|++.
T Consensus 107 ~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 107 TNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-LLADDLGTDQIHKFNIN 185 (361)
T ss_dssp ECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-EEEEETTTTEEEEEEEC
T ss_pred ECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-EEEEeCCCCEEEEEEEc
Confidence 3888888777 5889999999753322 1111111 1234688999999874 45566678899999986
Q ss_pred CCCC----c-ce-----EE-eecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCcccccccc
Q 010302 72 ADSN----E-PL-----IS-KKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 139 (513)
Q Consensus 72 ~~~~----~-~i-----~~-~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (513)
...+ + .. .. ...+......++|+|+|+++++++ .++.|.+|++.++++.. ...+.....
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~---------~~~~~~~~~ 256 (361)
T 3scy_A 186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE---------IQTVAADTV 256 (361)
T ss_dssp TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE---------EEEEESCSS
T ss_pred CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE---------eEEEecCCC
Confidence 3332 2 21 11 123455678999999999876666 68999999986532100 011112223
Q ss_pred CCcceEEEEEcCCCCEEEEEeC--CCcEEEEEcC--CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecc
Q 010302 140 SKTTVSAIEVSPDGKQFSITSP--DRRIRVFWFR--TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 215 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s~--D~~I~iwd~~--tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~ 215 (513)
+...+.+++|+|||++|++++. ++.|.+|++. +++...... +.
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~---------------------------------~~ 303 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY---------------------------------QL 303 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE---------------------------------EE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE---------------------------------ec
Confidence 4455789999999999876665 4899999985 455321110 00
Q ss_pred ccCCCCCCceEEcCCCCEEEEccc--cceEEE--EcccCcEEEE
Q 010302 216 KTETAPPSNAIFDESSNFLIYATL--LGIKIV--NLHTNKVSRI 255 (513)
Q Consensus 216 ~~~~~~~~~i~fd~~g~~li~~s~--~gi~v~--d~~t~~~v~~ 255 (513)
. ...+..++|+|+|++|++++. ..|.+| |..+|++..+
T Consensus 304 -~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 304 -T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp -C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred -C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 0 124567899999999888763 348885 5557776554
No 201
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.51 E-value=4.4e-13 Score=133.90 Aligned_cols=153 Identities=10% Similarity=-0.060 Sum_probs=107.3
Q ss_pred eEecCCCEEEEEeC-CCc--EEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 2 QVSVDGLLCCSISN-DKS--VKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 2 ~~s~dg~~las~s~-D~~--v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
+|||||++||.++. ++. |.+||+.+++...... .+...+..+.|+|+++ .++..+.++.|++||+. +++..
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~--~g~~~ 115 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLSPDDD--ALFYVKDGRNLMRVDLA--TLEEN 115 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEECTTSS--EEEEEETTTEEEEEETT--TCCEE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEcCCCC--EEEEEeCCCeEEEEECC--CCcce
Confidence 69999999999987 664 8888998877654432 3333333567999998 66666677899999997 66655
Q ss_pred EEeecCCCCeEEEE--EcCCCCEEEEE----------------------cCCCcEEEecCCCCCCCCcceeeeecCCccc
Q 010302 79 ISKKVHMGPVKVMR--YNPVFDTVISA----------------------DDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 79 ~~~~~h~~~V~~l~--~sp~~~~l~s~----------------------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
.....+...+.... ++|++++++.. +.+..|.+||+.+++ .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---------------~ 180 (388)
T 3pe7_A 116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---------------S 180 (388)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---------------E
T ss_pred eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---------------e
Confidence 55555555554444 48999988742 234668888887632 3
Q ss_pred cccccCCcceEEEEEcC-CCCEEEEEeCC------CcEEEEEcCCCeE
Q 010302 135 FEILKSKTTVSAIEVSP-DGKQFSITSPD------RRIRVFWFRTGKL 175 (513)
Q Consensus 135 ~~~~~~~~~v~~v~~sp-dg~~l~s~s~D------~~I~iwd~~tg~~ 175 (513)
..+..+...+..++||| ||+.|+..+.+ ..|.++|...++.
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 34445566789999999 99999877753 3677777765543
No 202
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.50 E-value=2.5e-12 Score=127.83 Aligned_cols=207 Identities=11% Similarity=-0.015 Sum_probs=133.9
Q ss_pred CeEecCCCE--EEEEe-------------CCCcEEEEEcc-CCceeEEEEcC--CCCCcEEEEEEcCCCcceEEEEeCCC
Q 010302 1 MQVSVDGLL--CCSIS-------------NDKSVKIYDVV-NYDMMLMIRLP--FIPGAVEWVYKQGDVKAGLAISDRNS 62 (513)
Q Consensus 1 v~~s~dg~~--las~s-------------~D~~v~iwd~~-~~~~~~~~~l~--~~~~~v~~v~~s~~~~~~~l~s~~~d 62 (513)
++|+|||++ +++++ .++++.+|++. +++....+... .+...+..+.|+|+++. ++++...+
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~ 166 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSADLTA 166 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEcCCC
Confidence 468999994 55553 68999999997 46554433321 23457899999999983 34445557
Q ss_pred CeEEEEecCCCCCcc--eEEee--cCCCCeEEEEEcCCCCEEEEEcC-CCcEEEecCC--CCCCCCcceeeeecCCcccc
Q 010302 63 SFVHIYDARADSNEP--LISKK--VHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPH--TLQFPESEVSFRLKSDTNLF 135 (513)
Q Consensus 63 ~~I~iwd~~~~~~~~--i~~~~--~h~~~V~~l~~sp~~~~l~s~s~-dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~ 135 (513)
+.|.+||+.. +++. +..+. .|...+..++|+|+|+++++++. ++.|.+|++. ++++ .... ..+.
T Consensus 167 ~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-----~~~~---~~~~ 237 (365)
T 1jof_A 167 NKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP-----VYTH---HSFP 237 (365)
T ss_dssp TEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----EEEE---EEEE
T ss_pred CEEEEEEECC-CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE-----EEcc---ceEE
Confidence 8999999962 2332 33343 24567899999999999877664 7899999654 3221 0000 0011
Q ss_pred cc----ccCCc------ceEEEE-EcCCCCEEEEEeCC-C-----cEEEEEcC-CCeEEEEecccHHHHHHHhcCCCCcc
Q 010302 136 EI----LKSKT------TVSAIE-VSPDGKQFSITSPD-R-----RIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAPLY 197 (513)
Q Consensus 136 ~~----~~~~~------~v~~v~-~spdg~~l~s~s~D-~-----~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~ 197 (513)
.+ .+|.. .+..++ |+|||++|++++.+ . .|.+|++. +|++......
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~---------------- 301 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL---------------- 301 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE----------------
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee----------------
Confidence 11 12222 588999 99999998776643 2 89999996 6765432100
Q ss_pred ccccccccceeeeeeeccccCCCCCCceEEcC---CCCEEEEccc--cceEEEEcccC
Q 010302 198 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE---SSNFLIYATL--LGIKIVNLHTN 250 (513)
Q Consensus 198 ~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~---~g~~li~~s~--~gi~v~d~~t~ 250 (513)
+ ......+..++|+| +|++|++++. ..|++|++..+
T Consensus 302 ----------------~-~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 302 ----------------S-PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ----------------E-ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ----------------e-ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 0 00012345678999 8999998865 35999999876
No 203
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=3.9e-11 Score=115.25 Aligned_cols=198 Identities=8% Similarity=-0.030 Sum_probs=138.6
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|+|+|+ +++++..++.|..||..++ ...+. .+...+..+.+++++. ++++...++.|.+||.. +++...
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d~~--~g~~~~ 104 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--HPSHHQNGHCLNKQGH--LIACSHGLRRLERQREP--GGEWES 104 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE--SSCSSEEEEEECTTCC--EEEEETTTTEEEEECST--TCCEEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE--CCCCCcceeeECCCCc--EEEEecCCCeEEEEcCC--CCcEEE
Confidence 47999998 7777888999999999876 34443 3456788999999887 77887778899999986 454433
Q ss_pred EeecC----CCCeEEEEEcCCCCEEEEEcC-----------------CCcEEEecCCCCCCCCcceeeeecCCccccccc
Q 010302 80 SKKVH----MGPVKVMRYNPVFDTVISADD-----------------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 138 (513)
Q Consensus 80 ~~~~h----~~~V~~l~~sp~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (513)
..... ...+..++++|+|+++++.+. .+.|..++.. ..+..+.
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----------------g~~~~~~ 168 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----------------GTLSAPI 168 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----------------SCEEEEE
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----------------CCEEEee
Confidence 22211 234567999999998887321 2344444442 1123334
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeE---EEEecccHHHHHHHhcCCCCccccccccccceeeeeeec
Q 010302 139 KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR-TGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEI 214 (513)
Q Consensus 139 ~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~-tg~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~ 214 (513)
.+...+..++|+|||+.+++.+.++.|.+|++. +|++ ...+ .
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~--------------------------------- 214 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T--------------------------------- 214 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C---------------------------------
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e---------------------------------
Confidence 455678899999999998777778999999987 5554 2222 1
Q ss_pred cccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeCCCC
Q 010302 215 EKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 215 ~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~ 260 (513)
.....+..+++|++|++++.. ..+|.+||.. |+.+..+....
T Consensus 215 --~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 215 --VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp --CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSS
T ss_pred --CCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCC
Confidence 011234578999999977776 6789999996 77777765443
No 204
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.44 E-value=2.7e-12 Score=137.90 Aligned_cols=209 Identities=10% Similarity=0.015 Sum_probs=132.4
Q ss_pred eEecCCCEEEEE--eCCCcEEEEEccCCceeEEEEcCCCCCcEE---------EEEEc--CCCcceEEEEeCCCCeEEEE
Q 010302 2 QVSVDGLLCCSI--SNDKSVKIYDVVNYDMMLMIRLPFIPGAVE---------WVYKQ--GDVKAGLAISDRNSSFVHIY 68 (513)
Q Consensus 2 ~~s~dg~~las~--s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~---------~v~~s--~~~~~~~l~s~~~d~~I~iw 68 (513)
+||+++.++++. +.++...||....+.... .+..+...+. ...|+ |+++.+++++...+..|.+|
T Consensus 30 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~ 107 (662)
T 3azo_A 30 GAVGDEVWWVAPRPAEAGRATLVRRRADGAEE--SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAF 107 (662)
T ss_dssp EEETTEEEEEEEETTTTTEEEEEEECTTSCEE--ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEE
T ss_pred EEcCCeEEEEecCcccCCcEEEEEECCCCCcc--eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEE
Confidence 578777777777 558899999964433322 3334444433 34444 88885234455556667777
Q ss_pred ecCCCCC-cceEEeec-----CCCCeEEEEEcCCCCEEEEEcCC----------CcEEEecCCCCCCCCcceeeeecCCc
Q 010302 69 DARADSN-EPLISKKV-----HMGPVKVMRYNPVFDTVISADDK----------GIIEYWSPHTLQFPESEVSFRLKSDT 132 (513)
Q Consensus 69 d~~~~~~-~~i~~~~~-----h~~~V~~l~~sp~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (513)
++.. .+ .....+.. |...+.+++|+|||+.|++++.+ ..|.+||+.+.... ...
T Consensus 108 ~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~ 177 (662)
T 3azo_A 108 EPDA-PGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA---------DRS 177 (662)
T ss_dssp CTTS-TTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT---------CGG
T ss_pred cCCC-CCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc---------cCC
Confidence 7620 02 33455555 67788999999999999988876 57889988651000 001
Q ss_pred cccccc-cCCcceEEEEEcCCCCEEEEEeCC--------CcEEEEEcC-CC---eEEEEecccHHHHHHHhcCCCCcccc
Q 010302 133 NLFEIL-KSKTTVSAIEVSPDGKQFSITSPD--------RRIRVFWFR-TG---KLRRVYDESLEVAQDLQRSDAPLYRL 199 (513)
Q Consensus 133 ~~~~~~-~~~~~v~~v~~spdg~~l~s~s~D--------~~I~iwd~~-tg---~~~~~~~~~~~~i~~~~~~~~~~~~l 199 (513)
....+. .+...+..++|||||++|+.++.+ ..|++||+. +| +......++
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----------------- 240 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----------------- 240 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-----------------
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-----------------
Confidence 223344 455678889999999999987754 379999998 57 332222110
Q ss_pred ccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc---eEEEEcccCcEEEEeCC
Q 010302 200 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG---IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 200 ~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g---i~v~d~~t~~~v~~~g~ 258 (513)
......+.|+|+|++++.+..++ |.+||+.+++...++..
T Consensus 241 -------------------~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 283 (662)
T 3azo_A 241 -------------------EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR 283 (662)
T ss_dssp -------------------TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred -------------------CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc
Confidence 01234678999999655554443 67777778887665543
No 205
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.44 E-value=5.8e-12 Score=125.70 Aligned_cols=203 Identities=11% Similarity=0.001 Sum_probs=131.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEE--EcCCCcceEEEE--------------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVY--KQGDVKAGLAIS-------------------- 58 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~--~s~~~~~~~l~s-------------------- 58 (513)
++|||||++|+.++.++.|++||+.+++....... +...+.... +++++. +++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV--PAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--CTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec--hhhcccccceeECCCCC--eeccccccCcccccccccchhhhh
Confidence 37999999999999999999999999887666553 233333333 367776 3332
Q ss_pred --eCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCC------CcEEEecCCCCCCCCcceeeeec
Q 010302 59 --DRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDK------GIIEYWSPHTLQFPESEVSFRLK 129 (513)
Q Consensus 59 --~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~ 129 (513)
...+..|.+||+. +++ ...+..+...+..++|+| +|+.|+.++.+ ..|.++|+...
T Consensus 162 ~~~~~~~~l~~~d~~--~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------ 226 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLK--TGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT------------ 226 (388)
T ss_dssp GGGCCCEEEEEEETT--TCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC------------
T ss_pred hccCCcceEEEEECC--CCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC------------
Confidence 2345679999997 554 444556677899999999 99988776653 25667776442
Q ss_pred CCccccccccCC--cceEEEEEcCCCCEEEEEeC--CC---cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccc
Q 010302 130 SDTNLFEILKSK--TTVSAIEVSPDGKQFSITSP--DR---RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI 202 (513)
Q Consensus 130 ~~~~~~~~~~~~--~~v~~v~~spdg~~l~s~s~--D~---~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 202 (513)
....+..+. ..+..++|||||+.|+..+. +. .|.+||+.+++........ ..
T Consensus 227 ---~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------------------~~ 285 (388)
T 3pe7_A 227 ---NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP------------------AC 285 (388)
T ss_dssp ---CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC------------------CE
T ss_pred ---ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC------------------Cc
Confidence 223333333 35788999999998866553 22 3999999998753322100 00
Q ss_pred cccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc----------ccceEEEEcccCcEEEEe
Q 010302 203 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT----------LLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 203 ~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s----------~~gi~v~d~~t~~~v~~~ 256 (513)
. ........+.|+|+|+.|++.. ...|.+||+.+++...+.
T Consensus 286 --------~-----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 286 --------S-----HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp --------E-----EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred --------e-----eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence 0 0000112347999999888643 235999999998875554
No 206
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.42 E-value=3e-12 Score=139.59 Aligned_cols=220 Identities=11% Similarity=-0.011 Sum_probs=137.0
Q ss_pred eEecCCCEEEEEeCC---------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCC
Q 010302 2 QVSVDGLLCCSISND---------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA 72 (513)
Q Consensus 2 ~~s~dg~~las~s~D---------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~ 72 (513)
+|||||++||.++.+ +.+.+||+.+++.. .+..++..+..+.|||+++. ++.+ .++.|++|++.
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~- 140 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEP- 140 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESST-
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECC-
Confidence 689999999999876 55679999998754 34556778999999999995 4443 35789999996
Q ss_pred CCCcceEE-eecCCCCe-----------------EEEEEcCCCCEEEEEcCCCc-EEEecCCCCCC-----C--------
Q 010302 73 DSNEPLIS-KKVHMGPV-----------------KVMRYNPVFDTVISADDKGI-IEYWSPHTLQF-----P-------- 120 (513)
Q Consensus 73 ~~~~~i~~-~~~h~~~V-----------------~~l~~sp~~~~l~s~s~dg~-i~iwd~~~~~~-----~-------- 120 (513)
+++..+. ..++...+ .++.|||||+.|+.++.|.+ +++|++..... |
T Consensus 141 -~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 141 -NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp -TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred -CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 4443332 12333323 35899999999998875544 55554321100 0
Q ss_pred --------CcceeeeecC---Cc--cccccc------cCCcceEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCe---
Q 010302 121 --------ESEVSFRLKS---DT--NLFEIL------KSKTTVSAIEVSPDGKQFSITSP----DRRIRVFWFRTGK--- 174 (513)
Q Consensus 121 --------~~~~~~~~~~---~~--~~~~~~------~~~~~v~~v~~spdg~~l~s~s~----D~~I~iwd~~tg~--- 174 (513)
..+..++.+. ++ ....+. .|...+..++|||||+.++.... +..|++||+.+|+
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~ 299 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW 299 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc
Confidence 0123344444 32 122222 37778999999999997765542 3479999999887
Q ss_pred -EEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecccc-CCCCCCceEEcCCCCEEE-Ecccc----ceEEEEc
Q 010302 175 -LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT-ETAPPSNAIFDESSNFLI-YATLL----GIKIVNL 247 (513)
Q Consensus 175 -~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~-~~~~~~~i~fd~~g~~li-~~s~~----gi~v~d~ 247 (513)
+..... +..+. -..- .......++|+|+|+.|+ +.+.. .|.+||.
T Consensus 300 ~~~~~~~---------------------------l~~~~-~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 300 NCLVARQ---------------------------HIEMS-TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp EECGGGC---------------------------EEEEC-SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred ceeEEEE---------------------------eeecc-CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 311000 00000 0000 000123678999999887 55432 3889999
Q ss_pred ccCcEEEEeC
Q 010302 248 HTNKVSRILG 257 (513)
Q Consensus 248 ~t~~~v~~~g 257 (513)
.+++..++..
T Consensus 352 ~~~~~~~lT~ 361 (740)
T 4a5s_A 352 DKKDCTFITK 361 (740)
T ss_dssp TCSSCEESCC
T ss_pred CCCceEeccc
Confidence 8887665543
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.41 E-value=2e-11 Score=115.38 Aligned_cols=235 Identities=9% Similarity=-0.016 Sum_probs=150.3
Q ss_pred CeEecCCCEEE-EEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCC-SISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~la-s~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+++++|++++ +.+.++.|.+||..+.... ... ......+..+.+.+++. ++++.. ++.|.+||.. . ....
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~--~-~~~~ 100 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLP-FNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAG--S-NNQT 100 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----E-ECC-CCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTT--C-SCCE
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccc-eEe-eCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCC--C-ceEe
Confidence 46789999887 5467899999997654322 111 12224567788888877 666666 7899999985 3 3333
Q ss_pred Eee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 80 SKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 80 ~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
.+. .....+.+++++|+++++++...++.|.+|+..+... ..........+.+++++|+|+.+++
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~p~~i~~~~~g~l~v~ 166 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--------------TVLPFTGLNDPDGVAVDNSGNVYVT 166 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--------------EECCCCSCCSCCCEEECTTCCEEEE
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--------------EeeccccCCCceeEEEeCCCCEEEE
Confidence 333 3335789999999999888888888999997644221 1111122345788999999998887
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
...++.|.+||..++........ ....+..++++++|++++...
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~------------------------------------~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQVVLPFT------------------------------------DITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp EGGGTEEEEECTTTCCEEECCCS------------------------------------SCCSEEEEEECTTCCEEEEET
T ss_pred ECCCCEEEEEecCCCceEeeccc------------------------------------CCCCceEEEECCCCCEEEEEC
Confidence 77788999999876554321100 002345789999997766654
Q ss_pred -ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 239 -LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 239 -~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
...|.+||..+..... +.... ......+.+ .+++.|+++...+++|++|..
T Consensus 211 ~~~~v~~~~~~~~~~~~-~~~~~----------------~~~p~~i~~-----------~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTV-LPFTG----------------LNTPLAVAV-----------DSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp TTSCEEEECTTCSCCEE-CCCCS----------------CSCEEEEEE-----------CTTCCEEEEEGGGTEEEEECC
T ss_pred CCCcEEEEcCCCCccee-eccCC----------------CCCceeEEE-----------CCCCCEEEEECCCCEEEEEcC
Confidence 3468999886554322 11000 001122222 256678999999999999987
Q ss_pred CCCC
Q 010302 318 REPE 321 (513)
Q Consensus 318 ~~~~ 321 (513)
.+++
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 7654
No 208
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.40 E-value=3.2e-11 Score=115.15 Aligned_cols=192 Identities=11% Similarity=0.107 Sum_probs=137.6
Q ss_pred eE-ecCCCEEEEEeC-CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QV-SVDGLLCCSISN-DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~-s~dg~~las~s~-D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++ +++|+++++... ++.|++|| .+++....+.. .+...+..+.+.+++. ++++...++.|.+||. .++.+.
T Consensus 83 ~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~-~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~---~g~~~~ 155 (286)
T 1q7f_A 83 AVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA-TILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ---NGNVLH 155 (286)
T ss_dssp EEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT-TTCSCEEEEEECTTSC--EEEEETTTTEEEEECT---TSCEEE
T ss_pred EEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC-ccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC---CCCEEE
Confidence 56 467777776643 88999999 55666555432 2334678899999887 8888888899999997 456666
Q ss_pred Eee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEEEEcCCCCE
Q 010302 80 SKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 80 ~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~ 155 (513)
.+. .+...+.+++++|+++++++...++.|++||... ..+..+.. +...+..++++|+|++
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---------------~~~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---------------QYLRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---------------CEEEEESCTTTSCSEEEEEECTTCCE
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC---------------CEEEEEccCCccCCCcEEEECCCCCE
Confidence 654 4556789999999999888888899999998743 12222222 2356899999999999
Q ss_pred EEEEeCCC-cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 156 FSITSPDR-RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 156 l~s~s~D~-~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
+++...++ .|++||. +++.+..+..+. ....+..++++++|+++
T Consensus 221 ~v~~~~~~~~i~~~~~-~g~~~~~~~~~~----------------------------------~~~~~~~i~~~~~g~l~ 265 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQ-DGQLISALESKV----------------------------------KHAQCFDVALMDDGSVV 265 (286)
T ss_dssp EEEECSSSCEEEEECT-TSCEEEEEEESS----------------------------------CCSCEEEEEEETTTEEE
T ss_pred EEEeCCCCEEEEEECC-CCCEEEEEcccC----------------------------------CCCcceeEEECCCCcEE
Confidence 88887776 9999994 566666553210 00123478999999988
Q ss_pred EEccccceEEEEcccC
Q 010302 235 IYATLLGIKIVNLHTN 250 (513)
Q Consensus 235 i~~s~~gi~v~d~~t~ 250 (513)
+......|++|++...
T Consensus 266 vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 266 LASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEEECSCC
T ss_pred EECCCCeEEEEEcccc
Confidence 7765556999987553
No 209
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.40 E-value=4.2e-11 Score=118.80 Aligned_cols=214 Identities=13% Similarity=0.059 Sum_probs=137.1
Q ss_pred CeEecCCCEEEEEe----------CCCcEEEEEccCCceeEEEEcCC----CCCcEEEEEEcCCCcceEEEEeCCCCeEE
Q 010302 1 MQVSVDGLLCCSIS----------NDKSVKIYDVVNYDMMLMIRLPF----IPGAVEWVYKQGDVKAGLAISDRNSSFVH 66 (513)
Q Consensus 1 v~~s~dg~~las~s----------~D~~v~iwd~~~~~~~~~~~l~~----~~~~v~~v~~s~~~~~~~l~s~~~d~~I~ 66 (513)
++|||||++|++++ .+++|.+||..+++.+..+.+.. +......+.++|+++.++++....++.|.
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~ 134 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG 134 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence 57999999999886 36789999999988887776431 12345678899999843333333468999
Q ss_pred EEecCCCCCcceEE-eecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCC-CCCC----------------------C
Q 010302 67 IYDARADSNEPLIS-KKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHT-LQFP----------------------E 121 (513)
Q Consensus 67 iwd~~~~~~~~i~~-~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~-~~~~----------------------~ 121 (513)
+||+. +.+.+.. +... ....+.+.|++ ..+++.+.||.+.+|+... ++.. .
T Consensus 135 v~d~~--~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (361)
T 2oiz_A 135 IVDVA--KGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALD 210 (361)
T ss_dssp EEETT--TTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEEC
T ss_pred EEECC--CCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEeccc
Confidence 99998 7777776 5422 22334455654 5566666677766665533 1110 0
Q ss_pred -----------cceeeeecCCccc--cccc------cCC----cceEEEEEcCCCCEEEEEeC-----------CCcEEE
Q 010302 122 -----------SEVSFRLKSDTNL--FEIL------KSK----TTVSAIEVSPDGKQFSITSP-----------DRRIRV 167 (513)
Q Consensus 122 -----------~~~~~~~~~~~~~--~~~~------~~~----~~v~~v~~spdg~~l~s~s~-----------D~~I~i 167 (513)
....++....... ..+. .+. .....++|+|+++.+.++.. ++.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 0001111100000 0000 000 01112789999887766542 347999
Q ss_pred EEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEEc
Q 010302 168 FWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNL 247 (513)
Q Consensus 168 wd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~ 247 (513)
||+.+++.+.++..+ . +..++|+|+|++|+.++...|.+||.
T Consensus 291 iD~~t~~~v~~i~~~-------------------------------------~-p~~ia~spdg~~l~v~n~~~v~v~D~ 332 (361)
T 2oiz_A 291 MDTKTKQRVARIPGR-------------------------------------D-ALSMTIDQQRNLMLTLDGGNVNVYDI 332 (361)
T ss_dssp EETTTTEEEEEEECT-------------------------------------T-CCEEEEETTTTEEEEECSSCEEEEEC
T ss_pred EECCCCcEEEEEecC-------------------------------------C-eeEEEECCCCCEEEEeCCCeEEEEEC
Confidence 999999988876431 1 56889999999888777766999999
Q ss_pred ccC--cEEEEe
Q 010302 248 HTN--KVSRIL 256 (513)
Q Consensus 248 ~t~--~~v~~~ 256 (513)
.++ ++++.+
T Consensus 333 ~t~~l~~~~~i 343 (361)
T 2oiz_A 333 SQPEPKLLRTI 343 (361)
T ss_dssp SSSSCEEEEEE
T ss_pred CCCcceeeEEe
Confidence 999 999886
No 210
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.40 E-value=1.4e-11 Score=132.36 Aligned_cols=207 Identities=9% Similarity=-0.109 Sum_probs=131.2
Q ss_pred ecCCCE-EEEEeC-CCcEEEEEcc--C-CceeEEEEcCC-----CCCcEEEEEEcCCCcceEEEEeCCC----------C
Q 010302 4 SVDGLL-CCSISN-DKSVKIYDVV--N-YDMMLMIRLPF-----IPGAVEWVYKQGDVKAGLAISDRNS----------S 63 (513)
Q Consensus 4 s~dg~~-las~s~-D~~v~iwd~~--~-~~~~~~~~l~~-----~~~~v~~v~~s~~~~~~~l~s~~~d----------~ 63 (513)
||||++ ||.++. +..|.+|++. + ++. .. +.. +...+..+.|+|+++ .++..+.+ .
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~--l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RP--LTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EE--CSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSSTTCEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-Ee--ccCCccCCCCccccCcEECCCCC--EEEEEEecccCCCCCCcee
Confidence 499998 876654 5566666665 2 433 22 223 455688999999999 44444443 5
Q ss_pred eEEEEecCCCCC-----cceEEee-cCCCCeEEEEEcCCCCEEEEEcCCC--------cEEEecCC-CCCCCCcceeeee
Q 010302 64 FVHIYDARADSN-----EPLISKK-VHMGPVKVMRYNPVFDTVISADDKG--------IIEYWSPH-TLQFPESEVSFRL 128 (513)
Q Consensus 64 ~I~iwd~~~~~~-----~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg--------~i~iwd~~-~~~~~~~~~~~~~ 128 (513)
.|++||+. .. .....+. .+...+..++|||||++|+.++.++ .|.+||+. ++..
T Consensus 162 ~i~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~--------- 230 (662)
T 3azo_A 162 FLAAVPLD--GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF--------- 230 (662)
T ss_dssp EEEEEETT--STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---------
T ss_pred EEEEEECC--CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---------
Confidence 79999986 31 3345565 6667788899999999998777543 68888886 3210
Q ss_pred cCCcccccc-ccCCcceEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccccc
Q 010302 129 KSDTNLFEI-LKSKTTVSAIEVSPDGKQFSITSPDR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 205 (513)
Q Consensus 129 ~~~~~~~~~-~~~~~~v~~v~~spdg~~l~s~s~D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 205 (513)
.....+ ..|...+..++|||||+++++++.++ .|.+||+.+++.......+... ..+
T Consensus 231 ---~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-------~~p---------- 290 (662)
T 3azo_A 231 ---ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF-------AGP---------- 290 (662)
T ss_dssp ---EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS-------SCC----------
T ss_pred ---cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc-------cCc----------
Confidence 122233 34567899999999999777777788 5666666677654332211000 000
Q ss_pred ceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEE--EcccCcEEEEeCC
Q 010302 206 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIV--NLHTNKVSRILGK 258 (513)
Q Consensus 206 ~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~--d~~t~~~v~~~g~ 258 (513)
........++|+++|++++.++...+++| |..+++ ++.+..
T Consensus 291 -----------~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~ 333 (662)
T 3azo_A 291 -----------LWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAG 333 (662)
T ss_dssp -----------CCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCS
T ss_pred -----------cccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecC
Confidence 00111346889999998888766336777 666666 455533
No 211
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.40 E-value=6.1e-11 Score=112.94 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=148.1
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
|..+++|++++.|+.|.+||.++++.+..+.... ...+..+.++|+++ ++++ .++.|..||. +++.+..+..
T Consensus 2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~~~~~~~pdG~--ilvs--~~~~V~~~d~---~G~~~W~~~~ 73 (276)
T 3no2_A 2 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-GWECNSVAATKAGE--ILFS--YSKGAKMITR---DGRELWNIAA 73 (276)
T ss_dssp -CCCEEEEECTTCSEEEEEETTTTEEEEEEECCT-TCCCCEEEECTTSC--EEEE--CBSEEEEECT---TSCEEEEEEC
T ss_pred CCCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-cCCCcCeEECCCCC--EEEe--CCCCEEEECC---CCCEEEEEcC
Confidence 3457889999999999999999999887776431 13577888999987 6664 3678999997 5778888875
Q ss_pred C-CCCeEEEEEcCCCCEEEEEcC-CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeC
Q 010302 84 H-MGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 161 (513)
Q Consensus 84 h-~~~V~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~ 161 (513)
+ ...+.++.+.|+|+++++.+. ++.+..+|. +++. .+........ ..+...+..+++.++|+++++.+.
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~-----l~~~~~~~~~---~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV-----LSKTEFETGI---ERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE-----EEEEEECCSC---SSGGGSCSCCEECTTSCEEEEETT
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE-----EEEEeccCCC---CcccccccCceECCCCCEEEEecC
Confidence 4 357889999999999998877 777777775 3321 1221111110 111123456678999999999999
Q ss_pred CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc
Q 010302 162 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 241 (513)
Q Consensus 162 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g 241 (513)
++.|..||.. |+.+.++... ..+..+...++|+.++.+...+
T Consensus 145 ~~~v~~~d~~-G~~~w~~~~~-------------------------------------~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 145 TSEVREIAPN-GQLLNSVKLS-------------------------------------GTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp TTEEEEECTT-SCEEEEEECS-------------------------------------SCCCEEEECTTSCEEEECBTTS
T ss_pred CCEEEEECCC-CCEEEEEECC-------------------------------------CCccceeEcCCCCEEEEeCCCC
Confidence 9999999988 9998877531 1223567788999998887664
Q ss_pred -eEEEEcccCcEEEEeCCC
Q 010302 242 -IKIVNLHTNKVSRILGKV 259 (513)
Q Consensus 242 -i~v~d~~t~~~v~~~g~~ 259 (513)
|..+|..+|+.+-.++..
T Consensus 187 ~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 187 CFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp EEEEECTTTCCEEEEEEGG
T ss_pred eEEEEeCcCCcEEEEecCC
Confidence 999999999999998643
No 212
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.39 E-value=1.9e-12 Score=129.42 Aligned_cols=199 Identities=11% Similarity=0.037 Sum_probs=125.6
Q ss_pred CeEecCCCEEEEEeCC---CcEEEEEccCCceeEEEEcCCCCCcEE-EEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISND---KSVKIYDVVNYDMMLMIRLPFIPGAVE-WVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D---~~v~iwd~~~~~~~~~~~l~~~~~~v~-~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
++|||||++||.++.+ ..|.+||+.+++.... ........ .+.|+|+++ .++..+.++.|.+||+. .++
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~--~~~ 113 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL---TEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE--TLE 113 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC---CCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT--TCC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe---ecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC--CCC
Confidence 4699999999887653 3688889988765332 22223322 267899998 66666667789999997 555
Q ss_pred ceEEeecCCCCeEE-------------------EEEcCCCCEEEEE-----cCCCcEEEecCCCCCCCCcceeeeecCCc
Q 010302 77 PLISKKVHMGPVKV-------------------MRYNPVFDTVISA-----DDKGIIEYWSPHTLQFPESEVSFRLKSDT 132 (513)
Q Consensus 77 ~i~~~~~h~~~V~~-------------------l~~sp~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (513)
.......+...... +.|+|+++.++.+ ..+..|.+||+.+++
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-------------- 179 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-------------- 179 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--------------
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--------------
Confidence 44444434332222 3456666665543 345678888886633
Q ss_pred cccccccCCcceEEEEEcC-CCCEEEEEeCC------CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccccc
Q 010302 133 NLFEILKSKTTVSAIEVSP-DGKQFSITSPD------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 205 (513)
Q Consensus 133 ~~~~~~~~~~~v~~v~~sp-dg~~l~s~s~D------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 205 (513)
...+..+...+..+.|+| +++.|+..+.+ ..|.+||+.+++.......
T Consensus 180 -~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~------------------------ 234 (396)
T 3c5m_A 180 -LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH------------------------ 234 (396)
T ss_dssp -EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC------------------------
T ss_pred -EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc------------------------
Confidence 222234556788999999 88877776643 3578888765543211100
Q ss_pred ceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc----c--eEEEEcccCcEEEEe
Q 010302 206 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----G--IKIVNLHTNKVSRIL 256 (513)
Q Consensus 206 ~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~----g--i~v~d~~t~~~v~~~ 256 (513)
........+.|+|+|++|++.+.. . |.+||+.+++...+.
T Consensus 235 -----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 235 -----------AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp -----------CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred -----------CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 000012357899999998887543 2 999999988765543
No 213
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.38 E-value=3.4e-10 Score=110.44 Aligned_cols=206 Identities=10% Similarity=0.031 Sum_probs=136.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC----CeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS----SFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d----~~I~iwd~~~~~~~ 76 (513)
++|+++|++++++..++.|.+||..+++...... .+...+..+.+++++. ++++...+ +.|.+||.. ...
T Consensus 50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~--~~~ 123 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATEN--GDN 123 (333)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTT--SCS
T ss_pred cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCC--CCE
Confidence 4689999988888889999999998877655432 3456789999999887 67776665 689999986 444
Q ss_pred ceEEee--cCCCCeEEEEEcCCCCEEEEEcC------CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEE
Q 010302 77 PLISKK--VHMGPVKVMRYNPVFDTVISADD------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIE 148 (513)
Q Consensus 77 ~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 148 (513)
....+. .+...+.+++++|+|+++++... .+.|..+|..+.+ +..+..+...+..++
T Consensus 124 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~~i~ 188 (333)
T 2dg1_A 124 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT---------------VTPIIQNISVANGIA 188 (333)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC---------------EEEEEEEESSEEEEE
T ss_pred EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE---------------EEEeecCCCcccceE
Confidence 332332 34457899999999998887664 2455556654322 111222223578999
Q ss_pred EcCCCCEEE-EEeCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 149 VSPDGKQFS-ITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 149 ~spdg~~l~-s~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
|+|+|+.|. +.+.++.|.+||+.+ ++.+..+... ... .+ .....+..++
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~-------------------------~~~--~~--~~~~~~~~i~ 239 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT-------------------------IPY--YF--TGHEGPDSCC 239 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE-------------------------EEE--EC--CSSSEEEEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce-------------------------EEE--ec--CCCCCCCceE
Confidence 999998664 445688999999864 4333222100 000 00 0001234689
Q ss_pred EcCCCCEEEEccc-cceEEEEcccCcEEEEeC
Q 010302 227 FDESSNFLIYATL-LGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 227 fd~~g~~li~~s~-~gi~v~d~~t~~~v~~~g 257 (513)
+|++|++++.... .+|.+||. +++.+..+.
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~ 270 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL 270 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence 9999997776644 46999998 577776664
No 214
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.37 E-value=1.7e-11 Score=122.36 Aligned_cols=196 Identities=11% Similarity=-0.002 Sum_probs=127.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEE-------------------EEEcCCCcceEEEE---
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEW-------------------VYKQGDVKAGLAIS--- 58 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~-------------------v~~s~~~~~~~l~s--- 58 (513)
+.|||||++|+.++.++.|++||+.+++........ ...... +.++|+++.+.+..
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD--EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc--cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 358999999999999999999999988766555422 121111 23455555321111
Q ss_pred eCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCC------CcEEEecCCCCCCCCcceeeeecCC
Q 010302 59 DRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDK------GIIEYWSPHTLQFPESEVSFRLKSD 131 (513)
Q Consensus 59 ~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~ 131 (513)
...+..|.+||+. +++... +..+...+..+.|+| +++.|+..+.+ ..|.+||+...+
T Consensus 164 ~~~~~~l~~~d~~--~g~~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------------- 227 (396)
T 3c5m_A 164 TNPTCRLIKVDIE--TGELEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------------- 227 (396)
T ss_dssp TCCCEEEEEEETT--TCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------------
T ss_pred CCCcceEEEEECC--CCcEEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------------
Confidence 1456689999996 554433 335677899999999 78877665543 357777765422
Q ss_pred ccccccccC--CcceEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccc
Q 010302 132 TNLFEILKS--KTTVSAIEVSPDGKQFSITSPD-----RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 204 (513)
Q Consensus 132 ~~~~~~~~~--~~~v~~v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 204 (513)
...+..+ ...+..++|+|||++|+..+.+ +.|++||+.+++.......
T Consensus 228 --~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----------------------- 282 (396)
T 3c5m_A 228 --VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM----------------------- 282 (396)
T ss_dssp --CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-----------------------
T ss_pred --eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-----------------------
Confidence 1222222 2357889999999988777643 4499999998875432210
Q ss_pred cceeeeeeeccccCCCCCCceEEcC-CCCEEEEcc-----------------ccceEEEEcccCcEEEE
Q 010302 205 GRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYAT-----------------LLGIKIVNLHTNKVSRI 255 (513)
Q Consensus 205 ~~r~~~e~e~~~~~~~~~~~i~fd~-~g~~li~~s-----------------~~gi~v~d~~t~~~v~~ 255 (513)
. . ..+.|++ +|+++++.+ ...|.+||+.+++...+
T Consensus 283 ------------~---~-~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 283 ------------P---P-CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp ------------C---S-EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred ------------C---C-CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 0 0 0167999 999888743 13589999988875444
No 215
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.34 E-value=6e-11 Score=116.03 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=137.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc-eeEEEEc-------CCCCCcEEEEEEcC-CCcceEEEEeC-CCCeEEEEec
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD-MMLMIRL-------PFIPGAVEWVYKQG-DVKAGLAISDR-NSSFVHIYDA 70 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~-~~~~~~l-------~~~~~~v~~v~~s~-~~~~~~l~s~~-~d~~I~iwd~ 70 (513)
|+++|+|+++++.+.++.|++||..... .+..+.- ..+-.....+++++ ++. ++++.+ .++.|++|+.
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~~~~~~I~~~~~ 173 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDGYCNSRIVQFSP 173 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEECSSCCEEEEECT
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeCCCCCeEEEEcC
Confidence 4789999999988889999999986432 3333321 12333688999998 666 777776 6899999995
Q ss_pred CCCCCcceEEeec----------CCCCeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc--
Q 010302 71 RADSNEPLISKKV----------HMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-- 137 (513)
Q Consensus 71 ~~~~~~~i~~~~~----------h~~~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (513)
+++.+..+.. +......++++|+ +.++++...++.|++||..+++ .+..+
T Consensus 174 ---~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--------------~~~~~~~ 236 (329)
T 3fvz_A 174 ---SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--------------FVREIKH 236 (329)
T ss_dssp ---TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------------EEEEECC
T ss_pred ---CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--------------EEEEEec
Confidence 6677776642 2234789999998 7777888889999999987533 23333
Q ss_pred ccCCcceEEEEEcCCCCEEEEE-------eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeee
Q 010302 138 LKSKTTVSAIEVSPDGKQFSIT-------SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 210 (513)
Q Consensus 138 ~~~~~~v~~v~~spdg~~l~s~-------s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~ 210 (513)
..+...+.+++|+| +..+++. +.+..|++||..+++.+..+....
T Consensus 237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~--------------------------- 288 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR--------------------------- 288 (329)
T ss_dssp TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS---------------------------
T ss_pred cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC---------------------------
Confidence 23556788999999 4333333 345689999999999988764200
Q ss_pred eeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEccc
Q 010302 211 EKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHT 249 (513)
Q Consensus 211 e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t 249 (513)
.....+..++++++|+++++.... .|++|++..
T Consensus 289 ------~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 289 ------KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ------SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ------CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 011234578999999766665544 589998753
No 216
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.34 E-value=8.6e-11 Score=127.43 Aligned_cols=203 Identities=10% Similarity=-0.014 Sum_probs=128.3
Q ss_pred CeEecCCCEEEEEeCCC-----cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCC------------
Q 010302 1 MQVSVDGLLCCSISNDK-----SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSS------------ 63 (513)
Q Consensus 1 v~~s~dg~~las~s~D~-----~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~------------ 63 (513)
++|||||++||.++.++ +|++||+.+++...... .. ..+..+.|+|+++. ++.++.+.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~--~~~~~~~wspDg~~--l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER--VKFSCMAWTHDGKG--MFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE--ECSCCEEECTTSSE--EEEEECCCCSSCCSSSCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC--cccceEEEEeCCCE--EEEEEECCcccccccccccc
Confidence 37999999999886543 89999999988765322 11 12456899999984 33333333
Q ss_pred ----eEEEEecCCCCCcc--eEEee--cCCCCeEEEEEcCCCCEEEEEcC-----CCcEEEecCCC------CCCCCcce
Q 010302 64 ----FVHIYDARADSNEP--LISKK--VHMGPVKVMRYNPVFDTVISADD-----KGIIEYWSPHT------LQFPESEV 124 (513)
Q Consensus 64 ----~I~iwd~~~~~~~~--i~~~~--~h~~~V~~l~~sp~~~~l~s~s~-----dg~i~iwd~~~------~~~~~~~~ 124 (513)
.|++|++. +++. ...+. .|...+.++.|+|+|++|+.++. +..|.+||+.+ +.
T Consensus 205 ~~~~~v~~~~l~--t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------ 276 (710)
T 2xdw_A 205 NLHQKLYYHVLG--TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI------ 276 (710)
T ss_dssp CCCCEEEEEETT--SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS------
T ss_pred CCCCEEEEEECC--CCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc------
Confidence 39999986 4432 22223 35566889999999999877664 56788888754 21
Q ss_pred eeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCeE--EEEecccHHHHHHHhcCCCCccc
Q 010302 125 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD----RRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYR 198 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D----~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~ 198 (513)
.....+..+...+.. .|+|+|+.|+..+.. ..|.+||+.+++. ...+-.+
T Consensus 277 -------~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~---------------- 332 (710)
T 2xdw_A 277 -------LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE---------------- 332 (710)
T ss_dssp -------CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC----------------
T ss_pred -------cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC----------------
Confidence 123344445444444 588999988766643 3689999877631 1111110
Q ss_pred cccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccc---eEEEEcccCcEEEEeCC
Q 010302 199 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG---IKIVNLHTNKVSRILGK 258 (513)
Q Consensus 199 l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~g---i~v~d~~t~~~v~~~g~ 258 (513)
.....+..+.|++++++++....++ |.+|++.+|+.++.+..
T Consensus 333 ------------------~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~ 377 (710)
T 2xdw_A 333 ------------------HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL 377 (710)
T ss_dssp ------------------CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC
T ss_pred ------------------CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC
Confidence 0001123466776666666665554 77888878887666643
No 217
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.34 E-value=1.2e-10 Score=113.96 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=153.5
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
+++++++...+++|.+||..+++.+..+. .......+.+++++. +.++...++.|.+||.. +++....+....
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~--t~~~~~~i~~g~ 125 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPK--TYEITGYIECPD 125 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETT--TTEEEEEEECTT
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECC--CCeEEEEEEcCC
Confidence 44556666678999999999999877764 235678888887774 66676578999999997 777777766433
Q ss_pred -----CCeEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 86 -----GPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 86 -----~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.....+++ .++.++++.. .++.|.+||+.+++. +..+.. ...+..++++|+|++++++
T Consensus 126 ~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~--------------~~~i~~-g~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 126 MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV--------------VDELTI-GIQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE--------------EEEEEC-SSCBCCCEECTTSEEEEEB
T ss_pred ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE--------------EEEEEc-CCCccceEEcCCCCEEEEE
Confidence 13456777 4444445544 488999999987432 222221 2345688999999977776
Q ss_pred eCC----------CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcC
Q 010302 160 SPD----------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 229 (513)
Q Consensus 160 s~D----------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~ 229 (513)
..+ +.|.+||..+++....+.- .....+..++|++
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-----------------------------------~~g~~p~~la~~~ 234 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-----------------------------------KLGDWPSEVQLNG 234 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-----------------------------------CTTCCCEEEEECT
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEec-----------------------------------CCCCCceeEEEec
Confidence 654 7899999999988765531 0012456889999
Q ss_pred CCCEEEEccccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEee---
Q 010302 230 SSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCA--- 306 (513)
Q Consensus 230 ~g~~li~~s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~--- 306 (513)
+|++|.+... .|.+||..++++... .++... ......+.++ +.+..|+++.
T Consensus 235 d~~~lyv~~~-~v~~~d~~t~~~~~~--------~~~~~~-------~~~p~gi~vd----------p~~g~lyva~~~~ 288 (328)
T 3dsm_A 235 TRDTLYWINN-DIWRMPVEADRVPVR--------PFLEFR-------DTKYYGLTVN----------PNNGEVYVADAID 288 (328)
T ss_dssp TSCEEEEESS-SEEEEETTCSSCCSS--------CSBCCC-------SSCEEEEEEC----------TTTCCEEEEECTT
T ss_pred CCCEEEEEcc-EEEEEECCCCceeee--------eeecCC-------CCceEEEEEc----------CCCCeEEEEcccc
Confidence 9998877665 899999988875311 000000 0111122221 3467788887
Q ss_pred -ecCceEEEEecC
Q 010302 307 -FKRHRIYLFSRR 318 (513)
Q Consensus 307 -~~~~~i~i~~~~ 318 (513)
..+++|++|+..
T Consensus 289 y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 289 YQQQGIVYRYSPQ 301 (328)
T ss_dssp SSSEEEEEEECTT
T ss_pred cccCCEEEEECCC
Confidence 788999999765
No 218
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.32 E-value=2.7e-10 Score=111.18 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=151.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
++|++++..++..+.++.++.|.- +....+ ..+......+.|++++. +++++..++.|.+||.. +++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~--~~~~~~~ 81 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTITA---EPWLEI--SKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPE--TKEIKRP 81 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEEEC---EEEEEE--ESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTT--TCCEEEE
T ss_pred eeecCCccceeEEeecccCccccc---ceeEEE--eccCccccCcEECCCCC--EEEEECCCCEEEEEeCC--CCcEEEE
Confidence 467888888887788899999932 333333 34555678999998887 88888888999999986 5554443
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCC----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
...+...+.+++|+|+++++++...+ +.|.+||..+... ..+.....+...+.+++++|+|+.+
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL------------QDIIEDLSTAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC------------EEEECSSSSCCCEEEEEECTTSCEE
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE------------EEEEccCccCCcccceEECCCCCEE
Confidence 33566789999999999988887766 6899999876432 0000001234568999999999988
Q ss_pred EEEeC------CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 157 SITSP------DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 157 ~s~s~------D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++... .+.|..||..+++....... ......++|+++
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------------~~~~~~i~~~~d 192 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------------------------------------ISVANGIALSTD 192 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEEEEEE-------------------------------------ESSEEEEEECTT
T ss_pred EEeccccccCCCceEEEEeCCCCEEEEeecC-------------------------------------CCcccceEECCC
Confidence 87654 24555555555444321110 012346789999
Q ss_pred CCEEEEcc--ccceEEEEccc-CcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeee
Q 010302 231 SNFLIYAT--LLGIKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF 307 (513)
Q Consensus 231 g~~li~~s--~~gi~v~d~~t-~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~ 307 (513)
|++|..+. ...|.+||+.+ ++.+..++... ...+.+ ......+.+ .+++.++++..
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~-------~~~~~~---~~~~~~i~~-----------d~~G~l~v~~~ 251 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATI-------PYYFTG---HEGPDSCCI-----------DSDDNLYVAMY 251 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE-------EEECCS---SSEEEEEEE-----------BTTCCEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcccccceE-------EEecCC---CCCCCceEE-----------CCCCCEEEEEc
Confidence 99665543 34699999864 44333321100 000000 011112222 25667788888
Q ss_pred cCceEEEEec
Q 010302 308 KRHRIYLFSR 317 (513)
Q Consensus 308 ~~~~i~i~~~ 317 (513)
.+++|++|+.
T Consensus 252 ~~~~v~~~d~ 261 (333)
T 2dg1_A 252 GQGRVLVFNK 261 (333)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEECC
Confidence 8889999965
No 219
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.27 E-value=1.8e-10 Score=113.07 Aligned_cols=189 Identities=11% Similarity=0.144 Sum_probs=117.9
Q ss_pred CeEecCCCEEEEEeCC---C--cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeC---------------
Q 010302 1 MQVSVDGLLCCSISND---K--SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDR--------------- 60 (513)
Q Consensus 1 v~~s~dg~~las~s~D---~--~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~--------------- 60 (513)
++|||||++||.++.+ + .|.+||+.+++....... .. +..+.|+|+++.+++.+..
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---SE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 3799999999988754 3 377888888776555442 23 8899999999854444321
Q ss_pred ----------CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC-------cEEEecCCCCCCCCcc
Q 010302 61 ----------NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-------IIEYWSPHTLQFPESE 123 (513)
Q Consensus 61 ----------~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~ 123 (513)
....|.+||+. +++.+..+.. . .+..++|+|+| ++++++.+. ...+|.+.+
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~--~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~------- 207 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTE--SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED------- 207 (347)
T ss_dssp C---------CEEEEEEEETT--TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET-------
T ss_pred eecCcccccCccceEEEEECC--CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC-------
Confidence 13568899986 5555355544 3 78899999999 777776542 345553322
Q ss_pred eeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCC
Q 010302 124 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD--------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 195 (513)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D--------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 195 (513)
++ ...+..+ ..+..+ ||||++|+..+.+ ..|.+|| +++......++
T Consensus 208 -------~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~------------- 261 (347)
T 2gop_A 208 -------GK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV------------- 261 (347)
T ss_dssp -------TE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-------------
T ss_pred -------Cc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC-------------
Confidence 11 2223333 445444 9999999877754 3577777 55543221110
Q ss_pred ccccccccccceeeeeeeccccCCCCCCc-eEEcCCCCEEEEccccc-eEEEEcccCcEEEEeC
Q 010302 196 LYRLEAIDFGRRMAVEKEIEKTETAPPSN-AIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 257 (513)
Q Consensus 196 ~~~l~~~~~~~r~~~e~e~~~~~~~~~~~-i~fd~~g~~li~~s~~g-i~v~d~~t~~~v~~~g 257 (513)
...+.. +.|+ +| +++.++.++ +++| +.+|+...++.
T Consensus 262 -----------------------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~ 299 (347)
T 2gop_A 262 -----------------------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK 299 (347)
T ss_dssp -----------------------CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC
T ss_pred -----------------------CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec
Confidence 011223 6798 88 666665554 7888 77777655554
No 220
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.27 E-value=6e-09 Score=99.38 Aligned_cols=231 Identities=10% Similarity=0.047 Sum_probs=154.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+++++|+++++...++.|.+||.. ++. ..+.+......+..+.+.+++. +.++...++.|..||.. ++ ...
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~---g~-~~~ 91 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK---GI-IKE 91 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT---SC-EEE
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC---Cc-EEE
Confidence 4678899988877668899999987 543 3333333456788899988877 77777778889999974 22 233
Q ss_pred ee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 81 KK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 81 ~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
+. .+...+.+++++++++++++...++.|..||. +++. .......+...+.+++++++|+.+++
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-------------~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-------------REYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-------------EEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-------------EEecCCCCCCCCceEEEcCCCCEEEE
Confidence 32 34567899999999998888888889999988 4221 01111223456899999999998887
Q ss_pred EeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
...++.|..||. +++....... .....+..++++++|++.+...
T Consensus 158 ~~~~~~i~~~~~-~g~~~~~~~~-----------------------------------~~~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 158 ENQNNAIGRITE-SGDITEFKIP-----------------------------------TPASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECS-----------------------------------STTCCEEEEEECTTSSEEEEET
T ss_pred eCCCCEEEEEcC-CCcEEEeeCC-----------------------------------CCCCcceeEEECCCCCEEEEcc
Confidence 777889999998 7765432100 0011234788999999766654
Q ss_pred -ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 239 -LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 239 -~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
..+|.+||. +++......... . ..+..+.. .+++.++++...+++|+.|+.
T Consensus 202 ~~~~i~~~~~-~g~~~~~~~~~~-~---------------~~~~~i~~-----------~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 202 IGNKIGRITT-SGEITEFKIPTP-N---------------ARPHAITA-----------GAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTTEEEEECT-TCCEEEEECSST-T---------------CCEEEEEE-----------CSTTCEEEEETTTTEEEEEET
T ss_pred CCceEEEECC-CCcEEEEECCCC-C---------------CCceeEEE-----------CCCCCEEEeccCCceEEEECC
Confidence 446999998 776543211100 0 01111212 255667777777889999975
No 221
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.27 E-value=2e-10 Score=112.67 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=92.2
Q ss_pred CCCEEEEEe---------CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC---CCeEEEEecCCC
Q 010302 6 DGLLCCSIS---------NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN---SSFVHIYDARAD 73 (513)
Q Consensus 6 dg~~las~s---------~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~---d~~I~iwd~~~~ 73 (513)
||+++|... .++.|.+||+.+++.... ..+..+.|+|+++.++.++... ...|.+||+.
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~-- 93 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE-- 93 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT--
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC--
Confidence 888887753 256799999988775332 3577889999998544433321 2347777876
Q ss_pred CCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC---------------------------CcEEEecCCCCCCCCcceee
Q 010302 74 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---------------------------GIIEYWSPHTLQFPESEVSF 126 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d---------------------------g~i~iwd~~~~~~~~~~~~~ 126 (513)
.++....... .. +.+++|+|+|+.|+.++.+ ..|.+||+.++
T Consensus 94 ~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~--------- 162 (347)
T 2gop_A 94 TLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE--------- 162 (347)
T ss_dssp TTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT---------
T ss_pred CCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC---------
Confidence 5554443333 34 9999999999998877632 45777777653
Q ss_pred eecCCccccccccCCcceEEEEEcCCCCEEEEEeCCC-------cEEEEEcCCCeE
Q 010302 127 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR-------RIRVFWFRTGKL 175 (513)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~-------~I~iwd~~tg~~ 175 (513)
+.+..+.. . .+..++|+||| .+++++.+. ...||.+.+++.
T Consensus 163 -----~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 163 -----EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp -----EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred -----eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 22123333 2 67789999999 777776542 445555445554
No 222
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.25 E-value=1.7e-10 Score=124.83 Aligned_cols=154 Identities=10% Similarity=-0.010 Sum_probs=99.1
Q ss_pred CeEecCCCEEE-----EEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCe-----------
Q 010302 1 MQVSVDGLLCC-----SISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSF----------- 64 (513)
Q Consensus 1 v~~s~dg~~la-----s~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~----------- 64 (513)
++|||||++|| +|+.+.+|++||+.+++......+.. .....+.|+|+++ .++.++.+..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGG
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCC--EEEEEEecCCCCCccccCCCC
Confidence 37999999999 44456789999999987641111111 1115789999998 4555445444
Q ss_pred --EEEEecCCCCCc--ceEEeecCCCCeEEEEEcCCCCEEEEEcCCC----cEEEecCCCCCCCCcceeeeecCCccccc
Q 010302 65 --VHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISADDKG----IIEYWSPHTLQFPESEVSFRLKSDTNLFE 136 (513)
Q Consensus 65 --I~iwd~~~~~~~--~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 136 (513)
|++|++..+..+ .+.....|...+.++.|+|+|++|+.++.++ .|.+|+..+. ....
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---------------~~~~ 266 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---------------DFRL 266 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---------------SCEE
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---------------ceEE
Confidence 999999622211 3333335667889999999999988777655 5666655332 2334
Q ss_pred cccCCcceEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCe
Q 010302 137 ILKSKTTVSAIEVSPDGKQFSITS---PDRRIRVFWFRTGK 174 (513)
Q Consensus 137 ~~~~~~~v~~v~~spdg~~l~s~s---~D~~I~iwd~~tg~ 174 (513)
+..+...+....+ ++|.++++.. .++.|.+||+.+++
T Consensus 267 l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 4445555566666 5666444433 25789999987764
No 223
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.25 E-value=1e-09 Score=108.80 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=105.8
Q ss_pred cCCCEEEEEe------CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe--------CCCCeEEEEec
Q 010302 5 VDGLLCCSIS------NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD--------RNSSFVHIYDA 70 (513)
Q Consensus 5 ~dg~~las~s------~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~--------~~d~~I~iwd~ 70 (513)
++++++..+. .|++|.+||..+++.+..+.. ... . .+.++|+++.++++.. ..++.|.+||.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~--g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT--AFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC--CEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecC--CCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 3677766654 378999999999988766553 222 2 8899999995444432 23678999999
Q ss_pred CCCCCcceEEeecC------CCCeEEEEEcCCCCEEEEEcC--CCcEEEecCCCCCCCCcceeeeecCCccccc-cccCC
Q 010302 71 RADSNEPLISKKVH------MGPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQFPESEVSFRLKSDTNLFE-ILKSK 141 (513)
Q Consensus 71 ~~~~~~~i~~~~~h------~~~V~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 141 (513)
. +.+.+..+... ......++++|+|++|+++.. +++|.+||+.+.+ .+.. +...
T Consensus 89 ~--t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~--------------~~~~~i~~~- 151 (361)
T 2oiz_A 89 D--KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD--------------YVEDVTAAA- 151 (361)
T ss_dssp T--TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE--------------EEEEEGGGT-
T ss_pred c--CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc--------------EEEEEecCC-
Confidence 7 77888877632 234567999999999988763 6789999998743 2333 2221
Q ss_pred cceEEEEEcCCC-CEEEEEeCCCcEEEEEcCC-CeEE
Q 010302 142 TTVSAIEVSPDG-KQFSITSPDRRIRVFWFRT-GKLR 176 (513)
Q Consensus 142 ~~v~~v~~spdg-~~l~s~s~D~~I~iwd~~t-g~~~ 176 (513)
....+.+.|++ ..+++.+.|+.+.+|++.. ++..
T Consensus 152 -~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 152 -GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp -TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred -CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 12335677876 6778888999999999865 6655
No 224
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.22 E-value=6.7e-10 Score=106.55 Aligned_cols=195 Identities=10% Similarity=0.003 Sum_probs=133.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEc-CC-CCCcEEEEEEcCCCcceEEEEeCC-----------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRL-PF-IPGAVEWVYKQGDVKAGLAISDRN----------------- 61 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l-~~-~~~~v~~v~~s~~~~~~~l~s~~~----------------- 61 (513)
++++++|+++++...++.|.+||..+++....... .. ....+..+.+++++. ++++.+.
T Consensus 74 l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 74 HCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp EEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSS
T ss_pred eeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCC
Confidence 46889999988877788999999988776443221 11 112456788899887 7776321
Q ss_pred CCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCC-CCCCCCcceeeeecCCccccccccC
Q 010302 62 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH-TLQFPESEVSFRLKSDTNLFEILKS 140 (513)
Q Consensus 62 d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (513)
.+.|..++.. + .+..+..+......++|+|+++.+++.+.++.|.+|++. ++++. .....+..+
T Consensus 152 ~~~l~~~~~~---g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~-----------~~~~~~~~~ 216 (296)
T 3e5z_A 152 GRWVFRLAPD---G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE-----------YQGVHFTVE 216 (296)
T ss_dssp SCEEEEECTT---S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE-----------EEEEEECCS
T ss_pred CcEEEEECCC---C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc-----------CCCeEeeCC
Confidence 2345555542 3 344455666778999999999998888888999999885 22110 001111224
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCC
Q 010302 141 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA 220 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~ 220 (513)
...+.+++++++|+++++. ++.|.+||.. ++.+..+.. +. .
T Consensus 217 ~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~-----------------------------------~~-~ 257 (296)
T 3e5z_A 217 PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT-----------------------------------PQ-T 257 (296)
T ss_dssp SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC-----------------------------------SS-C
T ss_pred CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC-----------------------------------CC-C
Confidence 4557789999999977766 8899999986 776665532 11 1
Q ss_pred CCCceEE-cCCCCEEEEccccceEEEEcccCcE
Q 010302 221 PPSNAIF-DESSNFLIYATLLGIKIVNLHTNKV 252 (513)
Q Consensus 221 ~~~~i~f-d~~g~~li~~s~~gi~v~d~~t~~~ 252 (513)
+.+++| +++++.|..++..++..++..++++
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred -ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 567888 5899988888888888888877663
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=2.2e-10 Score=113.52 Aligned_cols=145 Identities=13% Similarity=0.146 Sum_probs=110.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCc-----------eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYD-----------MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~-----------~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd 69 (513)
+++++...++++|+.+ .+++|++...+ ...... ++. +..++| ++. +++.+ .++.|++||
T Consensus 43 Lais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~~--~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 43 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HGD--QVLVS-TRNALYSLD 112 (388)
T ss_dssp EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ETT--EEEEE-ESSEEEEEE
T ss_pred EEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CCC--EEEEE-cCCcEEEEE
Confidence 5789999999999987 56669876433 112222 456 999999 555 56666 779999999
Q ss_pred cCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEE
Q 010302 70 ARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV 149 (513)
Q Consensus 70 ~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (513)
++ +.........|..++.++.+.+. .+++++.||.+.+||+.+... . .+...|.|++|
T Consensus 113 v~--sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~--------------~----~~~~~Vs~v~W 170 (388)
T 1xip_A 113 LE--ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST--------------K----QLAQNVTSFDV 170 (388)
T ss_dssp SS--STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE--------------E----EEEESEEEEEE
T ss_pred ch--hhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc--------------c----cccCCceEEEE
Confidence 97 55555566778888988887654 388899999999999976321 1 13457999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeE--EEEe
Q 010302 150 SPDGKQFSITSPDRRIRVFWFRTGKL--RRVY 179 (513)
Q Consensus 150 spdg~~l~s~s~D~~I~iwd~~tg~~--~~~~ 179 (513)
||+| ++.|..||++++|+...+++ .+++
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred cCCc--eEEEEcCCcEEEEcCCCcccccccee
Confidence 9999 67889999999999988886 5555
No 226
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.20 E-value=1.2e-09 Score=106.78 Aligned_cols=200 Identities=9% Similarity=-0.011 Sum_probs=134.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCC---CCcEEEEEEcCCCcceEEEEeC-CCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFI---PGAVEWVYKQGDVKAGLAISDR-NSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~---~~~v~~v~~s~~~~~~~l~s~~-~d~~I~iwd~~~~~~~ 76 (513)
|+++++|+++++...++.|.+||..+++....+.+... ......+.+ ++.. ++++.. .++.|.++|+. +++
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~-lyv~~~~~~~~v~viD~~--t~~ 163 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKY-VYVNCWSYQNRILKIDTE--TDK 163 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTE-EEEEECTTCCEEEEEETT--TTE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCE-EEEEcCCCCCEEEEEECC--CCe
Confidence 46789996666655899999999999988777765440 002333444 2332 555554 48899999997 777
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCC----------CcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDK----------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVS 145 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 145 (513)
.+..+.... ....++++|+|++++++..+ +.|.+||..+++. ...+.- ....+.
T Consensus 164 ~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--------------~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 164 VVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--------------EKQFKFKLGDWPS 228 (328)
T ss_dssp EEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--------------EEEEECCTTCCCE
T ss_pred EEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--------------EEEEecCCCCCce
Confidence 777776433 34688999999988777665 7899999877432 222221 123689
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCce
Q 010302 146 AIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNA 225 (513)
Q Consensus 146 ~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i 225 (513)
.++|+|+++.|.++.. .|.+||..+++..... . +. .....+..+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----------------~--~~----------------~~~~~p~gi 272 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----------------F--LE----------------FRDTKYYGL 272 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----------------S--BC----------------CCSSCEEEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeee----------------e--ec----------------CCCCceEEE
Confidence 9999999998887654 8999999887642100 0 00 001234578
Q ss_pred EEcC-CCCEEEEc----c-ccceEEEEcccCcEEEEeC
Q 010302 226 IFDE-SSNFLIYA----T-LLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 226 ~fd~-~g~~li~~----s-~~gi~v~d~~t~~~v~~~g 257 (513)
++|| +|++.+.. . ...|.+||.. |+++..+.
T Consensus 273 ~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 273 TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 9998 55555554 2 3359999998 99888773
No 227
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.18 E-value=3.2e-09 Score=102.29 Aligned_cols=235 Identities=12% Similarity=0.093 Sum_probs=146.2
Q ss_pred CeEecCCCEEEE-------EeCCCcEEEEEccCCceeEEEEc---CCCCCcEEEEEEcCC-CcceEEEEeCCCCeEEEEe
Q 010302 1 MQVSVDGLLCCS-------ISNDKSVKIYDVVNYDMMLMIRL---PFIPGAVEWVYKQGD-VKAGLAISDRNSSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las-------~s~D~~v~iwd~~~~~~~~~~~l---~~~~~~v~~v~~s~~-~~~~~l~s~~~d~~I~iwd 69 (513)
++|+++|+++++ ...++.|.+||..+++.... .. ..+...+..+.++++ +. +.++... ..|.+||
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~~-~~l~~~d 98 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEVNGYGGIPAGCQCDRDANQ--LFVADMR-LGLLVVQ 98 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEETTEECCEEEEEECSSSSE--EEEEETT-TEEEEEE
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-EecccCCCCCCCceEEEecCCCc--EEEEECC-CCEEEEe
Confidence 468899998887 56788999999888775432 21 113356788899888 55 5555543 3788899
Q ss_pred cCCCCCcceEEe-e-----cCCCCeEEEEEcCCCCEEEEEcCC---------------CcEEEecCCCCCCCCcceeeee
Q 010302 70 ARADSNEPLISK-K-----VHMGPVKVMRYNPVFDTVISADDK---------------GIIEYWSPHTLQFPESEVSFRL 128 (513)
Q Consensus 70 ~~~~~~~~i~~~-~-----~h~~~V~~l~~sp~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~~~~~ 128 (513)
.. ++. ..+ . .+...+.+++++++|+++++...+ +.|..|+.. ++
T Consensus 99 ~~---g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~---------- 163 (314)
T 1pjx_A 99 TD---GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ---------- 163 (314)
T ss_dssp TT---SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC----------
T ss_pred CC---CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC----------
Confidence 84 332 222 1 112357899999999988877655 456666653 21
Q ss_pred cCCccccccccCCcceEEEEEc----CCCCEEEEE-eCCCcEEEEEcC-CCeEEE--EecccHHHHHHHhcCCCCccccc
Q 010302 129 KSDTNLFEILKSKTTVSAIEVS----PDGKQFSIT-SPDRRIRVFWFR-TGKLRR--VYDESLEVAQDLQRSDAPLYRLE 200 (513)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~v~~s----pdg~~l~s~-s~D~~I~iwd~~-tg~~~~--~~~~~~~~i~~~~~~~~~~~~l~ 200 (513)
...+..+...+..++|+ |+++.|..+ ..++.|.+||.. +++... .+..
T Consensus 164 -----~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~------------------- 219 (314)
T 1pjx_A 164 -----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH------------------- 219 (314)
T ss_dssp -----EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-------------------
T ss_pred -----EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-------------------
Confidence 11122223356889999 999765544 568899999986 454311 1100
Q ss_pred cccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc-ccceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcc
Q 010302 201 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-LLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 279 (513)
Q Consensus 201 ~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s-~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~ 279 (513)
+.......+..+++|++|++++... ..+|.+||..+++.+..+..... .
T Consensus 220 -------------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-----------------~ 269 (314)
T 1pjx_A 220 -------------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-----------------K 269 (314)
T ss_dssp -------------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-----------------C
T ss_pred -------------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-----------------C
Confidence 0000001234688999999887764 45799999987876665532210 1
Q ss_pred eeeeeccccccccCCCCCCCCe-EEEeeecCceEEEEecCC
Q 010302 280 VRKIPAAAANANESKEPFSDPT-LLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~~~~i~i~~~~~ 319 (513)
+..+.+ .+|+. |+++...++.|+.|....
T Consensus 270 ~~~i~~-----------~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 270 PSNLHF-----------KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEE-----------CTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceeEEE-----------CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 111111 14554 888888888999997553
No 228
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.15 E-value=2.5e-08 Score=104.42 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=118.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEcc--CCceeEEEEcCCCCCcEEEEEEc----CCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVV--NYDMMLMIRLPFIPGAVEWVYKQ----GDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~--~~~~~~~~~l~~~~~~v~~v~~s----~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
+.|||||+++.+++.|+.|.+||+. +++.+..+... .....+.++ |+++. ++++...++++.++|.. +
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G---~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~--t 275 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGE--T 275 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETT--T
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECC--C
Confidence 4799999999999999999999996 77777666532 346788999 58874 45555667999999987 7
Q ss_pred CcceEEeec----------C-CCCeEEEEEcCCCCE-EEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 75 NEPLISKKV----------H-MGPVKVMRYNPVFDT-VISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 75 ~~~i~~~~~----------h-~~~V~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
.+++..+.. | ...+..+..++++.. +++...+|.|.++|..+.+. ..+..+ ....
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~------------~~v~~i-~~~~ 342 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN------------LKTTEI-SAER 342 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE------------EEEEEE-ECCS
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc------------ceeeee-eccc
Confidence 888877652 1 226788989987654 45666779999998865221 001111 2334
Q ss_pred ceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEe
Q 010302 143 TVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~ 179 (513)
...++.|+|||+++++++ .+++|.++|+.+++++..+
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 577899999999987766 5889999999999987665
No 229
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.15 E-value=4.9e-08 Score=92.99 Aligned_cols=232 Identities=11% Similarity=0.054 Sum_probs=152.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce-E
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL-I 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i-~ 79 (513)
|+++++|+++++...++.|.+||.. ++.. .+.+......+..+.+.+++. +.++...++.|..||.. ++.. .
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~---g~~~~~ 97 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKK---GGFTEY 97 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT---SCEEEE
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCC---CCeEEe
Confidence 3577899988877778999999987 5543 344443446788888888776 77777777889999974 2222 1
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+......+.+++++++++++++...++.|..+|.. ++. ....+......+.++++.++|+.+++.
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------------~~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-------------YEYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-------------EEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-------------EEccCCCCCCCceeEEECCCCCEEEEe
Confidence 222244678999999999988888778889999875 321 011122234568999999999977776
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
..++.|..||. +++... +.. + .....+..++++++|++.+....
T Consensus 164 ~~~~~i~~~~~-~g~~~~-~~~-----------~-----------------------~~~~~~~~i~~d~~g~l~v~~~~ 207 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLEE-YPL-----------P-----------------------TNAAAPVGITSGNDGALWFVEIM 207 (300)
T ss_dssp TTTTEEEEECT-TCCEEE-EEC-----------S-----------------------STTCCEEEEEECTTSSEEEEETT
T ss_pred cCCCeEEEECC-CCcEEE-eeC-----------C-----------------------CCCCCcceEEECCCCCEEEEccC
Confidence 66888999988 665533 210 0 00123357889999987776544
Q ss_pred c-ceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 010302 240 L-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 317 (513)
Q Consensus 240 ~-gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~ 317 (513)
. +|.++|. +++......... . .....+.. .+++.|+++...+++|+.|+.
T Consensus 208 ~~~i~~~~~-~g~~~~~~~~~~-~---------------~~~~~i~~-----------d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 208 GNKIGRITT-TGEISEYDIPTP-N---------------ARPHAITA-----------GKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSST-T---------------CCEEEEEE-----------CSTTCEEEEETTTTEEEEECT
T ss_pred CCEEEEEcC-CCcEEEEECCCC-C---------------CCceEEEE-----------CCCCCEEEeccCCCeEEEECC
Confidence 3 5888888 666544321100 0 01111111 245667777777889999975
No 230
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.15 E-value=1.3e-09 Score=117.80 Aligned_cols=159 Identities=14% Similarity=-0.037 Sum_probs=103.2
Q ss_pred EecCCCEEEEEeCCC---cEEEE--EccCCceeEEEEcC----CCCCcEEEEEEcCCCcceEEE---EeCCCCeEEEEec
Q 010302 3 VSVDGLLCCSISNDK---SVKIY--DVVNYDMMLMIRLP----FIPGAVEWVYKQGDVKAGLAI---SDRNSSFVHIYDA 70 (513)
Q Consensus 3 ~s~dg~~las~s~D~---~v~iw--d~~~~~~~~~~~l~----~~~~~v~~v~~s~~~~~~~l~---s~~~d~~I~iwd~ 70 (513)
.+|+|++++....++ .-.|| +...++....+..+ .|...+..+.|||+++.+.+. +|+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 468999998887544 34455 44444443443322 233468889999999943222 3444678999999
Q ss_pred CCCCCcceEEeecCCCCe--EEEEEcCCCCEEEEEcCCCc-------------EEEecCCCCCCCCcceeeeecCCcccc
Q 010302 71 RADSNEPLISKKVHMGPV--KVMRYNPVFDTVISADDKGI-------------IEYWSPHTLQFPESEVSFRLKSDTNLF 135 (513)
Q Consensus 71 ~~~~~~~i~~~~~h~~~V--~~l~~sp~~~~l~s~s~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~ 135 (513)
. +++.+. ..+...+ .+++|+|||+.|+.++.|.. |++|++.+.+. ....+.
T Consensus 155 ~--tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~----------~~~lv~ 220 (695)
T 2bkl_A 155 D--SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS----------KDTVVH 220 (695)
T ss_dssp T--TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG----------GCEEEE
T ss_pred C--CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch----------hceEEE
Confidence 7 555431 1122222 68999999999999988776 99999876331 011233
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCeE
Q 010302 136 EILKSKTTVSAIEVSPDGKQFSITSPDR----RIRVFWFRTGKL 175 (513)
Q Consensus 136 ~~~~~~~~v~~v~~spdg~~l~s~s~D~----~I~iwd~~tg~~ 175 (513)
....+...+.++.|||||++|+..+.++ .|++|+..+++.
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~ 264 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF 264 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce
Confidence 3344566789999999999998877655 566666555543
No 231
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.13 E-value=1e-08 Score=103.28 Aligned_cols=259 Identities=12% Similarity=0.031 Sum_probs=150.8
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCC--eEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSS--FVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~--~I~iwd~~~~~~~~i 78 (513)
|+|+++|+++++...++.|++||..++........ ..... +.+++++. .++.+..++ .|.+|+.. .....
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~--~~~~~ 207 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKA--SGWAP 207 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGG--GTTCE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcC--CCcee
Confidence 57899999888877789999999988776655442 22233 88999887 444444433 78888875 33333
Q ss_pred EEe----ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc-eE-EEEEcCC
Q 010302 79 ISK----KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT-VS-AIEVSPD 152 (513)
Q Consensus 79 ~~~----~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~-~v~~spd 152 (513)
..+ ..+...+.+++++|++..|+.+..++.|..||..+... ..+.. .....+... .. .++|+|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~------~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQ------LELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE----EEEEE------CCCCSCCCCSSCCEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE----EEEec------ccccCCCCCCccccEEEeCC
Confidence 333 22446678899999555555577788999999876321 00000 001112122 23 8999995
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCC
Q 010302 153 -GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 231 (513)
Q Consensus 153 -g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g 231 (513)
+.++++-..++.|+.|+.... +..+-++.. ..-+ .+ + ...+ .....+..++++++|
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~---------~~g~-~d----g--~~~~-----~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDGE--CEWFCGSAT---------QKTV-QD----G--LREE-----ALFAQPNGMTVDEDG 334 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTCC--EEEEEECTT---------CCSC-BC----E--EGGG-----CBCSSEEEEEECTTC
T ss_pred CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCC---------CCCc-CC----C--cccc-----cEeCCCeEEEEeCCC
Confidence 556666667889999987543 222222110 0000 00 0 0000 111235689999999
Q ss_pred CEEEEcc-c-cceEEEEcccCcEEEEeCCCCccchhheeccccCCc---CCcceeeeeccccccccCCCCCCCCeEEEee
Q 010302 232 NFLIYAT-L-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR---SSKKVRKIPAAAANANESKEPFSDPTLLCCA 306 (513)
Q Consensus 232 ~~li~~s-~-~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~ 306 (513)
+++++.+ . ..|++|++.+|++....|... ..- ...+.+ .......+.+ .+++.|+++.
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~-~~g-----~~~g~~~~~~~~~P~giav-----------d~~g~lyVad 397 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGYVSTVAGQVD-VAS-----QIDGTPLEATFNYPYDICY-----------DGEGGYWIAE 397 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTEEEEEEECTT-CBS-----CCCBSTTTCCBSSEEEEEE-----------CSSSEEEEEE
T ss_pred CEEEEeCCCCCEEEEEECCCCEEEEEeCCCC-CCC-----cCCCChhceEeCCceEEEE-----------cCCCCEEEEE
Confidence 9776655 3 359999988888766655311 000 000100 0011222222 2567888888
Q ss_pred ecCceEEEEec
Q 010302 307 FKRHRIYLFSR 317 (513)
Q Consensus 307 ~~~~~i~i~~~ 317 (513)
..++||+.++.
T Consensus 398 ~~n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AWGKAIRKYAV 408 (409)
T ss_dssp STTCEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 88999988753
No 232
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.13 E-value=9.4e-08 Score=90.97 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=133.6
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI- 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~- 79 (513)
|+++++|+++++...++.|..||.. ++ ...+.+......+..+.+.+++. +.++...++.|..||.. ++...
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~---g~~~~~ 134 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDD---GKIREY 134 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT---CCEEEE
T ss_pred EEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCC---CCEEEe
Confidence 4678899988887778899999986 33 23344333445788899988776 77777778899999873 33222
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
....+...+.+++++++++++++...++.|..||. +++. ....+..+...+.+++++++|+.+++.
T Consensus 135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-------------~~~~~~~~~~~~~~i~~~~~g~l~v~~ 200 (299)
T 2z2n_A 135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-------------TEFKIPTPASGPVGITKGNDDALWFVE 200 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-------------EEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-------------EEeeCCCCCCcceeEEECCCCCEEEEc
Confidence 22234567899999999998888877888999988 5321 001122234568899999999988777
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc-c
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA-T 238 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~-s 238 (513)
..++.|.+||. +++... +... .....+..++++++|++.+.. .
T Consensus 201 ~~~~~i~~~~~-~g~~~~-~~~~----------------------------------~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 201 IIGNKIGRITT-SGEITE-FKIP----------------------------------TPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp TTTTEEEEECT-TCCEEE-EECS----------------------------------STTCCEEEEEECSTTCEEEEETT
T ss_pred cCCceEEEECC-CCcEEE-EECC----------------------------------CCCCCceeEEECCCCCEEEeccC
Confidence 67889999998 766432 2100 011234578899999966665 3
Q ss_pred ccceEEEEcccCcE
Q 010302 239 LLGIKIVNLHTNKV 252 (513)
Q Consensus 239 ~~gi~v~d~~t~~~ 252 (513)
..+|.+||. +++.
T Consensus 245 ~~~i~~~d~-~g~~ 257 (299)
T 2z2n_A 245 ANKIGRLTS-NNII 257 (299)
T ss_dssp TTEEEEEET-TTEE
T ss_pred CceEEEECC-CCce
Confidence 457999998 5553
No 233
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.13 E-value=2.9e-09 Score=100.24 Aligned_cols=194 Identities=9% Similarity=0.003 Sum_probs=130.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+++++|+++++.. ++.|.+||..+... ..+.. .....+..+.+.+++. +.++...++.|.+|+.. +......
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~-~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~--~~~~~~~ 144 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAG--SKTQTVL 144 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCC-EECCC-CSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTT--CCSCEEC
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeec-CCcCCCcceEECCCCC--EEEEECCCCEEEEEECC--CceeEee
Confidence 46889999777666 88999999876543 22211 1224678899998877 77777778899999764 3333322
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 160 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s 160 (513)
...+...+.+++++|+++++++...++.|.+||...... ......+...+.+++++++|+.+++..
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--------------VVLPFTDITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--------------EECCCSSCCSEEEEEECTTCCEEEEET
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce--------------EeecccCCCCceEEEECCCCCEEEEEC
Confidence 223334678899999999888887788999999865321 111112225688999999998888777
Q ss_pred CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc
Q 010302 161 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 240 (513)
Q Consensus 161 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~ 240 (513)
.++.|.+||........ .. ......+..++++++|++++.....
T Consensus 211 ~~~~v~~~~~~~~~~~~-~~-----------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTV-LP-----------------------------------FTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp TTSCEEEECTTCSCCEE-CC-----------------------------------CCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred CCCcEEEEcCCCCccee-ec-----------------------------------cCCCCCceeEEECCCCCEEEEECCC
Confidence 78999999976543221 00 0001234578999999866665443
Q ss_pred -ceEEEEcccCc
Q 010302 241 -GIKIVNLHTNK 251 (513)
Q Consensus 241 -gi~v~d~~t~~ 251 (513)
.|++++....+
T Consensus 255 ~~v~~~~~~~~~ 266 (270)
T 1rwi_B 255 DRVVKLTSLEHH 266 (270)
T ss_dssp TEEEEECCCGGG
T ss_pred CEEEEEcCCCcc
Confidence 47777776544
No 234
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.11 E-value=1.4e-08 Score=106.31 Aligned_cols=206 Identities=12% Similarity=0.064 Sum_probs=140.5
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
+.+.++++...+++|.++|..+++.+..+... .....+.++|+++ ++.+++.++.|.+||+...+.+.+.++...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---~~p~~v~~SpDGr--~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS---SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---CCccceEECCCCC--EEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 44566777778999999999999988877633 3566899999998 555566789999999842356777777754
Q ss_pred CCCeEEEEEc----CCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeecCCcc-ccccccC-CcceEEEEEcCCCCEEE
Q 010302 85 MGPVKVMRYN----PVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTN-LFEILKS-KTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 85 ~~~V~~l~~s----p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~~v~~spdg~~l~ 157 (513)
.. ...++|+ |+|+++++++ .++++.++|..+.+.... ...... ......| ...+..+..|+++..++
T Consensus 240 ~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~-----i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 240 SE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-----QSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp SE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-----EECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred CC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE-----EeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 43 5789999 6999887666 458999999877543111 000000 0000012 22578899999877554
Q ss_pred -EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 158 -ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 158 -s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
....+|.|.++|..+.+.+.... + .....+..+.|+++|++++.
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~---------------------------------i--~~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTE---------------------------------I--SAERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEE---------------------------------E--ECCSSEEEEEECTTSCEEEE
T ss_pred EEecCCCeEEEEecCCCccceeee---------------------------------e--eccccccCceECCCCCEEEE
Confidence 44467999999987754332211 0 00112235689999999877
Q ss_pred cc--ccceEEEEcccCcEEEEe
Q 010302 237 AT--LLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 237 ~s--~~gi~v~d~~t~~~v~~~ 256 (513)
++ ...|.++|..+++++..+
T Consensus 359 a~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 359 AANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEGGGTEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEECCCCcEEEEE
Confidence 65 346999999999988766
No 235
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.10 E-value=1e-08 Score=111.10 Aligned_cols=202 Identities=8% Similarity=-0.049 Sum_probs=134.2
Q ss_pred CeEecCCCEEEEEeCCCc----------------EEEEEccCCcee--EEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-
Q 010302 1 MQVSVDGLLCCSISNDKS----------------VKIYDVVNYDMM--LMIRLPFIPGAVEWVYKQGDVKAGLAISDRN- 61 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~----------------v~iwd~~~~~~~--~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~- 61 (513)
++|||||+.|+.++.++. |++|++.+++.. .......++.....+.|+++++.+++.+...
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 479999999999998776 999999887632 2333333455678899999999544444322
Q ss_pred --CCeEEEEecCCCC----Cc-ceEEeecCCCCeEEEEEcCCCCEEEEEcCC----CcEEEecCCCCCCCCcceeeeecC
Q 010302 62 --SSFVHIYDARADS----NE-PLISKKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPESEVSFRLKS 130 (513)
Q Consensus 62 --d~~I~iwd~~~~~----~~-~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~ 130 (513)
+..|.+||+.... +. ....+..+...+.. .|+|+|+.|+..+.+ ..|.+||+.+...
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----------- 323 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE----------- 323 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-----------
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-----------
Confidence 6789999996200 32 45666667666655 488999887665543 3588888866321
Q ss_pred CccccccccCCc--ceEEEEEcCCCCEEEEEeCCCc--EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccc
Q 010302 131 DTNLFEILKSKT--TVSAIEVSPDGKQFSITSPDRR--IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 206 (513)
Q Consensus 131 ~~~~~~~~~~~~--~v~~v~~spdg~~l~s~s~D~~--I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 206 (513)
.....+..|.. .+..++|++++.++++...|+. |.+||+.+|+.++.+..+
T Consensus 324 -~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~------------------------ 378 (710)
T 2xdw_A 324 -SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE------------------------ 378 (710)
T ss_dssp -GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC------------------------
T ss_pred -ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC------------------------
Confidence 11233444433 5888999988888888888875 566677678766655321
Q ss_pred eeeeeeeccccCCCCCCceEEcCCCCEEEEc--cc---cceEEEEcccCc
Q 010302 207 RMAVEKEIEKTETAPPSNAIFDESSNFLIYA--TL---LGIKIVNLHTNK 251 (513)
Q Consensus 207 r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~--s~---~gi~v~d~~t~~ 251 (513)
......+.++++++.+++. +. ..|..||+.+++
T Consensus 379 ------------~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 379 ------------VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ------------SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ------------CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 0112345678888876654 22 248899998887
No 236
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.09 E-value=1.6e-07 Score=89.41 Aligned_cols=195 Identities=11% Similarity=0.008 Sum_probs=132.0
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE-
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI- 79 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~- 79 (513)
|+++++|+++++...++.|..||.. ++. ..+.+......+..+.+.+++. +.++...++.|..||.. ++...
T Consensus 67 i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~---g~~~~~ 139 (300)
T 2qc5_A 67 LIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD---GTIYEY 139 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT---SCEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC---CCEEEc
Confidence 3577889988877778899999987 554 3344433346688888888776 77777777889999874 33322
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.+......+.++++++++++.++...++.|..+|. +++. .......+...+.+++++++|+.+++.
T Consensus 140 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-------------~~~~~~~~~~~~~~i~~d~~g~l~v~~ 205 (300)
T 2qc5_A 140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL-------------EEYPLPTNAAAPVGITSGNDGALWFVE 205 (300)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-------------EEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE-------------EEeeCCCCCCCcceEEECCCCCEEEEc
Confidence 22334567899999999997777777888999987 4221 011112234568999999999888777
Q ss_pred eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc
Q 010302 160 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 239 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~ 239 (513)
...+.|.+||. +++....... .....+..++++++|++.+....
T Consensus 206 ~~~~~i~~~~~-~g~~~~~~~~-----------------------------------~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 206 IMGNKIGRITT-TGEISEYDIP-----------------------------------TPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp TTTTEEEEECT-TCCEEEEECS-----------------------------------STTCCEEEEEECSTTCEEEEETT
T ss_pred cCCCEEEEEcC-CCcEEEEECC-----------------------------------CCCCCceEEEECCCCCEEEeccC
Confidence 67788999997 5554332100 00123457889999996665543
Q ss_pred -cceEEEEcccCcEE
Q 010302 240 -LGIKIVNLHTNKVS 253 (513)
Q Consensus 240 -~gi~v~d~~t~~~v 253 (513)
.+|.++|. +++..
T Consensus 250 ~~~i~~~~~-~g~~~ 263 (300)
T 2qc5_A 250 ANQIGRITN-DNTIQ 263 (300)
T ss_dssp TTEEEEECT-TSCEE
T ss_pred CCeEEEECC-CCcEE
Confidence 56888888 56543
No 237
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.09 E-value=1e-08 Score=97.43 Aligned_cols=202 Identities=12% Similarity=0.034 Sum_probs=141.9
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-CCeEEEEecCCCCCcceEE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-SSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-d~~I~iwd~~~~~~~~i~~ 80 (513)
+++|+|++|+ +.++.|..||. +++.+..+... ....+..+.+.++++ ++++.+. ++.+..+|. +++.+..
T Consensus 43 ~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~-~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~---~Gk~l~~ 113 (276)
T 3no2_A 43 AATKAGEILF--SYSKGAKMITR-DGRELWNIAAP-AGCEMQTARILPDGN--ALVAWCGHPSTILEVNM---KGEVLSK 113 (276)
T ss_dssp EECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-TTCEEEEEEECTTSC--EEEEEESTTEEEEEECT---TSCEEEE
T ss_pred EECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-CCccccccEECCCCC--EEEEecCCCCEEEEEeC---CCCEEEE
Confidence 6789999998 45788999999 78888777642 224677888899988 6776655 677777775 5677766
Q ss_pred ee------cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 81 KK------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 81 ~~------~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
+. .+......+++.++|+++++.+.++.|..||.. ++. .|.++ .. ..+.++.+.++|+
T Consensus 114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-----~w~~~---------~~-~~~~~~~~~~~g~ 177 (276)
T 3no2_A 114 TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-----LNSVK---------LS-GTPFSSAFLDNGD 177 (276)
T ss_dssp EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-----EEEEE---------CS-SCCCEEEECTTSC
T ss_pred EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-----EEEEE---------CC-CCccceeEcCCCC
Confidence 64 122345566788999999999999999999986 442 23322 21 3456788899999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEE
Q 010302 155 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 234 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~l 234 (513)
.+++++.++.|..+|..+|+.+..+.... +.......+..++..++|+.+
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~------------------------------~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVNAND------------------------------IEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEEGGG------------------------------SBSCCCSEEEEEEECTTSCEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEecCCC------------------------------CCCccccccccceEcCCCCEE
Confidence 99998888899999999999988875211 000001123466778899988
Q ss_pred EEccc---------cceEEEEc-ccCcEEEEeCC
Q 010302 235 IYATL---------LGIKIVNL-HTNKVSRILGK 258 (513)
Q Consensus 235 i~~s~---------~gi~v~d~-~t~~~v~~~g~ 258 (513)
+.... ...+++.+ .+|+++-.+..
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 87642 13456666 47777777654
No 238
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.07 E-value=1.5e-09 Score=118.28 Aligned_cols=236 Identities=11% Similarity=-0.010 Sum_probs=132.2
Q ss_pred CeEecCCCEEEEEeCC-----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC------------CC
Q 010302 1 MQVSVDGLLCCSISND-----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN------------SS 63 (513)
Q Consensus 1 v~~s~dg~~las~s~D-----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~------------d~ 63 (513)
++|||||++||.++.+ .+|++||+.+++.+.... . ......+.|+|+ +.++..+... ..
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~--~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-K--WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-E--EEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-C--CceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 3799999999988754 469999999988754311 1 111246789999 6433333211 22
Q ss_pred eEEEEecCCCCCc--ceEEee--cCCCCeEEEEEcCCCCEEEEEcCCC-----cEEEecCCCCCCCCcceeeeecCCccc
Q 010302 64 FVHIYDARADSNE--PLISKK--VHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 64 ~I~iwd~~~~~~~--~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
.|++|++. ++. ....+. .+...+.++.|+|+|++|+..+.++ .|.+||+.+... +..
T Consensus 244 ~v~~~~lg--t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~------------~~~ 309 (741)
T 1yr2_A 244 TVWLHRLG--TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI------------GPV 309 (741)
T ss_dssp EEEEEETT--SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE------------CCC
T ss_pred EEEEEECC--CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC------------ccc
Confidence 48899985 333 222333 3334588999999999887766443 688888755210 102
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeC----CCcEEEEEcCCC--eEEEEecccHHHHHHHhcCCCCcccccccccccee
Q 010302 135 FEILKSKTTVSAIEVSPDGKQFSITSP----DRRIRVFWFRTG--KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 208 (513)
Q Consensus 135 ~~~~~~~~~v~~v~~spdg~~l~s~s~----D~~I~iwd~~tg--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~ 208 (513)
..+..+...+... ++|+|+.|+..+. ++.|.+||+.++ +....+.++...+..+.+....++.....+...++
T Consensus 310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEE
T ss_pred EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEE
Confidence 3344444444444 3489998887775 345999999884 44444443322222222222211111111111111
Q ss_pred ee-------eeeccccCCCCCCceEEcCCCCEEEEc--cc---cceEEEEcccCcEEEEe
Q 010302 209 AV-------EKEIEKTETAPPSNAIFDESSNFLIYA--TL---LGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 209 ~~-------e~e~~~~~~~~~~~i~fd~~g~~li~~--s~---~gi~v~d~~t~~~v~~~ 256 (513)
.. .+.+..+.......+.++++++.|++. +. ..|..||+.+++ ...+
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~-~~~l 447 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK-TTPW 447 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE-EEEC
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEE
Confidence 11 111211112233456788888877644 22 248999998887 3444
No 239
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.02 E-value=1.6e-07 Score=90.11 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=125.4
Q ss_pred eEecCC-CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 2 QVSVDG-LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 2 ~~s~dg-~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
.|++++ .++++...++.|..||..+++. ..+. .+..+..+.+++++. ++++. +..|.+||.. +++....
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~---~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~--~g~~~~~ 88 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT---MDAPVSSVALRQSGG--YVATI--GTKFCALNWK--EQSAVVL 88 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE---CSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT--TTEEEEE
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe---CCCceEEEEECCCCC--EEEEE--CCeEEEEECC--CCcEEEE
Confidence 588864 5555556789999999988765 3333 346788999999988 55554 4579999986 4433222
Q ss_pred eec----CCCCeEEEEEcCCCCEEEEEcCC---------CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 81 KKV----HMGPVKVMRYNPVFDTVISADDK---------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 81 ~~~----h~~~V~~l~~sp~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
... ....+..++++|+|+++++.... ..-.+|.+.. ...+..+..+....+.+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~--------------~g~~~~~~~~~~~pngi 154 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP--------------DHHVKKYFDQVDISNGL 154 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--------------TSCEEEEEEEESBEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC--------------CCCEEEEeeccccccce
Confidence 211 12347889999999977755322 2234443321 11122222333457899
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEEc--CCCeEEE--EecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCC
Q 010302 148 EVSPDGKQFS-ITSPDRRIRVFWF--RTGKLRR--VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 222 (513)
Q Consensus 148 ~~spdg~~l~-s~s~D~~I~iwd~--~tg~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~ 222 (513)
+|+||++.|. +.+.++.|.+|++ .+|++.. .+.. +. .....+
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~-----------------~~----------------~~~~~p 201 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK-----------------LE----------------KEEQIP 201 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE-----------------CC----------------GGGCEE
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE-----------------CC----------------CCCCCC
Confidence 9999999764 4556789999987 5665421 1100 00 000123
Q ss_pred CceEEcCCCCEEEEcccc-ceEEEEcccCcEEEEeC
Q 010302 223 SNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILG 257 (513)
Q Consensus 223 ~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~~g 257 (513)
..+++|++|++.+..... .|.+||..+|+++..+.
T Consensus 202 ~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 202 DGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp EEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 468899999877766543 49999999999888774
No 240
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.00 E-value=3e-07 Score=88.47 Aligned_cols=195 Identities=9% Similarity=-0.005 Sum_probs=126.2
Q ss_pred eEecCCC-EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 2 QVSVDGL-LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 2 ~~s~dg~-~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
.|+|+|+ ++++...++.|..|+. +++. ..+. .....+..+.+.++++ ++++...++.|..|+.. ++ +..
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~--~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~---g~-~~~ 120 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLL--DATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD---GQ-AHL 120 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEE--ESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT---SC-EEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEe--CCCCccceeeECCCCC--EEEEECCCCEEEEECCC---CC-EEE
Confidence 6899998 5566667899999998 4443 3332 2446688899999887 77777677889999974 33 222
Q ss_pred eecC-----CCCeEEEEEcCCCCEEEE----EcC-------------CCcEEEecCCCCCCCCcceeeeecCCccccccc
Q 010302 81 KKVH-----MGPVKVMRYNPVFDTVIS----ADD-------------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 138 (513)
Q Consensus 81 ~~~h-----~~~V~~l~~sp~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (513)
+..+ ...+.+++++|+|++.++ +.. .+.|..||..+++. ..+.
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~---------------~~~~ 185 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL---------------QRMA 185 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC---------------EEEE
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE---------------EEEe
Confidence 2211 134667999999998886 332 24566666654332 1111
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeee
Q 010302 139 KSKTTVSAIEVSPDGKQFSITSPD------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 212 (513)
Q Consensus 139 ~~~~~v~~v~~spdg~~l~s~s~D------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~ 212 (513)
.......++|+||++.|..+... +.|.+|++..+. +.... ...+
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~---------------------------~~~~- 235 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR---------------------------HFAS- 235 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE---------------------------EEEC-
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe---------------------------EEEE-
Confidence 22357889999999987776654 789999987654 21110 0000
Q ss_pred eccccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEeC
Q 010302 213 EIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 213 e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~g 257 (513)
.....+..+++|++|++.+.. ..+|.+||. .|+.+..+.
T Consensus 236 ----~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~-~g~~~~~~~ 274 (305)
T 3dr2_A 236 ----VPDGLPDGFCVDRGGWLWSSS-GTGVCVFDS-DGQLLGHIP 274 (305)
T ss_dssp ----CSSSCCCSEEECTTSCEEECC-SSEEEEECT-TSCEEEEEE
T ss_pred ----CCCCCCCeEEECCCCCEEEec-CCcEEEECC-CCCEEEEEE
Confidence 011234578999999955544 678999998 577766664
No 241
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.96 E-value=2.9e-08 Score=108.09 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=97.2
Q ss_pred EecCCCEEEEEeCCCc---EEEEEcc-----CCceeEEEEcC----CCCCcEEEEEEcCCCcceEEEEeC-CC--CeEEE
Q 010302 3 VSVDGLLCCSISNDKS---VKIYDVV-----NYDMMLMIRLP----FIPGAVEWVYKQGDVKAGLAISDR-NS--SFVHI 67 (513)
Q Consensus 3 ~s~dg~~las~s~D~~---v~iwd~~-----~~~~~~~~~l~----~~~~~v~~v~~s~~~~~~~l~s~~-~d--~~I~i 67 (513)
.+|||++++....++. -.+|-.. .++....+..+ .+...+..+.|||+++.+...+.. .+ ..|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4689999988775433 5566543 33333332221 122357789999999853333221 11 46999
Q ss_pred EecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCc--------------EEEecCCCCCCCCcceeeeecCCcc
Q 010302 68 YDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI--------------IEYWSPHTLQFPESEVSFRLKSDTN 133 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~ 133 (513)
||+. +++.+.. ..+...+..++|+|| +.|+.++.++. |.+|++.+... ....
T Consensus 194 ~dl~--tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----------~~~l 259 (741)
T 1yr2_A 194 VGVA--DGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS----------ADQP 259 (741)
T ss_dssp EETT--TCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG----------GCEE
T ss_pred EECC--CCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch----------hCEE
Confidence 9997 5655432 222222357899999 98888776654 77888765321 0112
Q ss_pred ccccccCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCC
Q 010302 134 LFEILKSKTTVSAIEVSPDGKQFSITSPDR-----RIRVFWFRTG 173 (513)
Q Consensus 134 ~~~~~~~~~~v~~v~~spdg~~l~s~s~D~-----~I~iwd~~tg 173 (513)
+.....+...+..+.|||||++|+..+.++ .|++||+.++
T Consensus 260 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 260 VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 222233444688999999999998777543 8999999877
No 242
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.96 E-value=4.6e-07 Score=89.91 Aligned_cols=249 Identities=9% Similarity=-0.052 Sum_probs=147.2
Q ss_pred CeEecCCCEEEEEe----------CCCcEEEEEccCCceeEEEEcCCC-----CCcEEEEEEcCCCcceEEEEeCCCCeE
Q 010302 1 MQVSVDGLLCCSIS----------NDKSVKIYDVVNYDMMLMIRLPFI-----PGAVEWVYKQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 1 v~~s~dg~~las~s----------~D~~v~iwd~~~~~~~~~~~l~~~-----~~~v~~v~~s~~~~~~~l~s~~~d~~I 65 (513)
+++||||++|..+. .+++|.+||..+.+.+..+.+... ......+.++|+++.++++....++.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 57999999998886 367899999999888877765310 123457899999995433332236789
Q ss_pred EEEecCCCCCcceEE-eecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcc
Q 010302 66 HIYDARADSNEPLIS-KKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 66 ~iwd~~~~~~~~i~~-~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
.++| . +++.+.. +.... ++.+.|++ +.+++.+.||.+.+||. +++.... .. .... +......
T Consensus 151 ~viD-~--t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-----~~-~~~~--~~~~~p~ 214 (373)
T 2mad_H 151 GLVV-Q--GGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-----GL-VGAM--LTAAQNL 214 (373)
T ss_pred EEEE-C--CCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-----Ee-cccc--ccCCcce
Confidence 9999 8 7787777 64221 24455654 45677788999999988 6432100 00 0000 1111111
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCC
Q 010302 144 VSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 221 (513)
Q Consensus 144 v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~ 221 (513)
.....+.+++..++..+.++.+.+.|+.++.. +..++-.........+ ....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~--------------------------~p~g 268 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW--------------------------RPGG 268 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce--------------------------ecCc
Confidence 23356777776655555788999999876532 2222100000000000 0011
Q ss_pred CCceEEcCCCCEEEEccc-----------cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccccc
Q 010302 222 PSNAIFDESSNFLIYATL-----------LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 290 (513)
Q Consensus 222 ~~~i~fd~~g~~li~~s~-----------~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (513)
...+.++++|+.+..... ..|.++|..++++++.+.... +...+++
T Consensus 269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~-------------------- 325 (373)
T 2mad_H 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISV-------------------- 325 (373)
T ss_pred eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEE--------------------
Confidence 224678999887665432 249999999999998873211 1222221
Q ss_pred ccCCCCCCCC--eEEEeeecCceEEEEecCCC
Q 010302 291 NESKEPFSDP--TLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 291 ~~~~~~~~d~--~l~~s~~~~~~i~i~~~~~~ 320 (513)
.+|+ .++++...++.+++|.-++.
T Consensus 326 ------s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 326 ------AQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred ------CCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 2454 45555557899999986653
No 243
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.87 E-value=1e-07 Score=102.93 Aligned_cols=156 Identities=10% Similarity=-0.030 Sum_probs=94.7
Q ss_pred CeEecCCCEEEEE-----eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-----------CCe
Q 010302 1 MQVSVDGLLCCSI-----SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-----------SSF 64 (513)
Q Consensus 1 v~~s~dg~~las~-----s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-----------d~~ 64 (513)
++|||||++||-+ +.+.+|++||+.+++.+.. .+.. .....+.|+ +++.++..+... ...
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 3799999999854 3346899999999986543 2111 112456788 888544443321 245
Q ss_pred EEEEecCCCCCcceEEe--ec-CCCCeEEEEEcCCCCEEEEEc----CCCcEEEecCCCCCCCCcceeeeecCCcccccc
Q 010302 65 VHIYDARADSNEPLISK--KV-HMGPVKVMRYNPVFDTVISAD----DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI 137 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~--~~-h~~~V~~l~~sp~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 137 (513)
|++|++.....+....+ .. |...+.++.|+|+|++|+... .+..|.+||+.+.. .....+
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~l 276 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN-------------APLLTV 276 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT-------------CCCEEE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC-------------CceEEE
Confidence 89999863222223333 23 455678999999999875433 22478888886532 123344
Q ss_pred ccCCcceEEEEEcCCCCEEEEEe-CC---CcEEEEEcCCCe
Q 010302 138 LKSKTTVSAIEVSPDGKQFSITS-PD---RRIRVFWFRTGK 174 (513)
Q Consensus 138 ~~~~~~v~~v~~spdg~~l~s~s-~D---~~I~iwd~~tg~ 174 (513)
..+....... |+++|..|+..+ .+ +.|..+|+.++.
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 4444444444 677777665444 33 568888887654
No 244
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.86 E-value=2e-08 Score=99.37 Aligned_cols=131 Identities=6% Similarity=-0.014 Sum_probs=96.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
|+| |+++|+++ .++.|++||+.+........ .+...+..+.+.+. -++.+..||.+.+||+. ++....
T Consensus 93 l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~--~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~--~~~~~~- 160 (388)
T 1xip_A 93 VCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT--SFEKPVFQLKNVNN----TLVILNSVNDLSALDLR--TKSTKQ- 160 (388)
T ss_dssp EEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE--ECSSCEEEEEECSS----EEEEEETTSEEEEEETT--TCCEEE-
T ss_pred EEE--CCCEEEEE-cCCcEEEEEchhhhccCccc--eeecceeeEEecCC----CEEEEECCCCEEEEEcc--CCcccc-
Confidence 467 89999998 88999999998766444332 44566777776644 26666789999999997 444432
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc------c---cCCcceEEEEEcC
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI------L---KSKTTVSAIEVSP 151 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~v~~v~~sp 151 (513)
+...|+|++|||+| ++.+..||++++|++...++ ....++ . .|...|.+++|.+
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~------------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM------------EKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE------------EEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc------------cccceecCCcccccccCCCeeEEEEEEec
Confidence 45689999999999 67888999999997755321 001112 2 3678899999999
Q ss_pred CCCEEEEEe
Q 010302 152 DGKQFSITS 160 (513)
Q Consensus 152 dg~~l~s~s 160 (513)
+++++++-.
T Consensus 224 ~~~flv~y~ 232 (388)
T 1xip_A 224 PQDFLAVFG 232 (388)
T ss_dssp SSEEEEEEE
T ss_pred CCeEEEEEc
Confidence 999998754
No 245
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.85 E-value=1.2e-06 Score=86.95 Aligned_cols=206 Identities=5% Similarity=-0.139 Sum_probs=126.8
Q ss_pred CeEecCCCEEEEEeC--CCcEEEEEccCCceeEE-EEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 1 MQVSVDGLLCCSISN--DKSVKIYDVVNYDMMLM-IRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 1 v~~s~dg~~las~s~--D~~v~iwd~~~~~~~~~-~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
++|||||++|+.++. +.+|.++| .+++.+.. +.+. +. +.+.+++.. .+++.+.|+.+.++|. +++.
T Consensus 130 ~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~~---~~~~~~~~~-~~~~~~~dg~~~~vd~---~g~~ 198 (373)
T 2mad_H 130 NANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---TC---YHIHPGAPS-TFYLLCAQGGLAKTDH---AGGA 198 (373)
T ss_pred eEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---ce---EEEEeCCCc-eEEEEcCCCCEEEEEC---CCcE
Confidence 479999999998874 57899999 99888766 4422 22 344555554 4455667889999988 2333
Q ss_pred eEEee-----cCCCCe-EEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcC
Q 010302 78 LISKK-----VHMGPV-KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP 151 (513)
Q Consensus 78 i~~~~-----~h~~~V-~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 151 (513)
+.... ....++ ....+.+++..++..+..+.+.+.|+........ -.++....... ...........++++|
T Consensus 199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~-~~~~~~~~~~~-~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK-APIDALSGGRK-ADTWRPGGWQQVAYLK 276 (373)
T ss_pred EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe-eeeeecCCccc-ccceecCceEeEEECC
Confidence 32211 111222 2345667665554445678898888865321000 00111000000 0000122344588999
Q ss_pred CCCEEEEEeC----------CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCC
Q 010302 152 DGKQFSITSP----------DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 221 (513)
Q Consensus 152 dg~~l~s~s~----------D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~ 221 (513)
|++.+.+... ++.|.++|..+++.+..+.. ...
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------------------------------------g~~ 319 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------------------------------------GHD 319 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------------------------------------CCC
Confidence 9998776543 35799999999999887632 113
Q ss_pred CCceEEcCCCCEEEEc-c--ccceEEEEcccCcEEEEe
Q 010302 222 PSNAIFDESSNFLIYA-T--LLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 222 ~~~i~fd~~g~~li~~-s--~~gi~v~d~~t~~~v~~~ 256 (513)
+..+.|+++|+.++|. . ...|.|+|..++++++.+
T Consensus 320 p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 5688999999944444 3 235999999999999883
No 246
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.84 E-value=3.6e-07 Score=89.55 Aligned_cols=225 Identities=11% Similarity=0.104 Sum_probs=124.0
Q ss_pred CeEecCCCEEEEEe--CCCcEEEEEccCCceeEEE----EcCCCCCcEEEEEEcCCCcceEEEEeCC-----CCeEEEEe
Q 010302 1 MQVSVDGLLCCSIS--NDKSVKIYDVVNYDMMLMI----RLPFIPGAVEWVYKQGDVKAGLAISDRN-----SSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s--~D~~v~iwd~~~~~~~~~~----~l~~~~~~v~~v~~s~~~~~~~l~s~~~-----d~~I~iwd 69 (513)
|+++++|+++++.. .++.++||.+.+++....- ....+-..+..+.+.+++. +.++... +..|.+||
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~--L~v~D~g~~~~~~~~i~~~d 99 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGI--VWMLDNGNQSKSVPKLVAWD 99 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSE--EEEEECHHHHTSCCEEEEEE
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCc--EEEEcCCCCcCCCCeEEEEE
Confidence 47899999999864 2343666666554432100 0012335788999998876 5555443 57899999
Q ss_pred cCCCCCcceEEeecC------CCCeEEEEEcCCCCE-EEEEc---CCCcEEEecCCCCCCCCcc----------eeeeec
Q 010302 70 ARADSNEPLISKKVH------MGPVKVMRYNPVFDT-VISAD---DKGIIEYWSPHTLQFPESE----------VSFRLK 129 (513)
Q Consensus 70 ~~~~~~~~i~~~~~h------~~~V~~l~~sp~~~~-l~s~s---~dg~i~iwd~~~~~~~~~~----------~~~~~~ 129 (513)
+. +++.+..+..+ ......++++|++.. +++-. .++.|.+||+.+++..... ..+...
T Consensus 100 ~~--tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~ 177 (343)
T 2qe8_A 100 TL--NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVID 177 (343)
T ss_dssp TT--TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEET
T ss_pred CC--CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeEC
Confidence 97 67766666532 234688999986544 45554 5788999998765421000 000000
Q ss_pred CCcccccccc------CCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcccccccc
Q 010302 130 SDTNLFEILK------SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 203 (513)
Q Consensus 130 ~~~~~~~~~~------~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 203 (513)
+..+..... ....+..++|+|||+.|..+..++. ++|.+.+... .++. +....
T Consensus 178 -g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~---~~~~----------------~~~~~ 236 (343)
T 2qe8_A 178 -GVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADL---SNLQ----------------LTDAE 236 (343)
T ss_dssp -TEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHH---TCTT----------------CCHHH
T ss_pred -CEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHh---cCCC----------------CChhh
Confidence 000000000 1124688999999998888776553 4444321000 0000 00000
Q ss_pred ccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc-ceEEEEcccCcEEEE
Q 010302 204 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRI 255 (513)
Q Consensus 204 ~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~-gi~v~d~~t~~~v~~ 255 (513)
....+... .....+..+++|++|++++..... .|.+||..+|+...+
T Consensus 237 ~~~~~~~~-----g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~ 284 (343)
T 2qe8_A 237 LGSKIERY-----SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL 284 (343)
T ss_dssp HHTTCEEE-----EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred hhcceEec-----ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE
Confidence 00000000 001245679999999987776554 499999866764433
No 247
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.83 E-value=1.6e-07 Score=94.29 Aligned_cols=217 Identities=12% Similarity=-0.002 Sum_probs=128.5
Q ss_pred CeEecCCCEEEEEe----------CCCcEEEEEccCCceeEEEEcCCC-----CCcEEEEEEcCCCcceEEEEeCCCCeE
Q 010302 1 MQVSVDGLLCCSIS----------NDKSVKIYDVVNYDMMLMIRLPFI-----PGAVEWVYKQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 1 v~~s~dg~~las~s----------~D~~v~iwd~~~~~~~~~~~l~~~-----~~~v~~v~~s~~~~~~~l~s~~~d~~I 65 (513)
|++||||++|..+. .++.|.++|..+++.+..+.+... ......+.++++++.+++.....++.|
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~V 202 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAV 202 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeE
Confidence 57999999887775 467999999999999888776411 123456789999985443333346889
Q ss_pred EEEecCCCCCcceEEeecCCC-------CeEEEEEcCCCCEEEEEcCCCcEE-----EecCCCCCCCC------------
Q 010302 66 HIYDARADSNEPLISKKVHMG-------PVKVMRYNPVFDTVISADDKGIIE-----YWSPHTLQFPE------------ 121 (513)
Q Consensus 66 ~iwd~~~~~~~~i~~~~~h~~-------~V~~l~~sp~~~~l~s~s~dg~i~-----iwd~~~~~~~~------------ 121 (513)
.+.|+. +.+.+.++..... .-.-+.++++|++++....++.+. ++++.......
T Consensus 203 sVID~~--t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~ 280 (426)
T 3c75_H 203 GVVDLE--GKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLV 280 (426)
T ss_dssp EEEETT--TTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEE
T ss_pred EEEECC--CCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEE
Confidence 999998 7788877763211 011244555555554443444332 22222110000
Q ss_pred ------cceeeeecCCcc--ccccc-------c---CCcceEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCC
Q 010302 122 ------SEVSFRLKSDTN--LFEIL-------K---SKTTVSAIEVSPDGKQFSITSP----------DRRIRVFWFRTG 173 (513)
Q Consensus 122 ------~~~~~~~~~~~~--~~~~~-------~---~~~~v~~v~~spdg~~l~s~s~----------D~~I~iwd~~tg 173 (513)
.....+...... +..+. . .......++++|+++++.+... ++.|.++|..++
T Consensus 281 ~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~ 360 (426)
T 3c75_H 281 WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG 360 (426)
T ss_dssp EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC
Confidence 001111111000 00000 0 0011123688888886665432 357899999998
Q ss_pred eEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC-EEEEccc--cceEEEEcccC
Q 010302 174 KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATL--LGIKIVNLHTN 250 (513)
Q Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~-~li~~s~--~gi~v~d~~t~ 250 (513)
+.+..+.-. ..+..+.|+++|+ .++.... ..|.|+|..++
T Consensus 361 kvv~~I~vg-------------------------------------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 361 ERINKIELG-------------------------------------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp CEEEEEEEE-------------------------------------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEEECC-------------------------------------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 888776320 1245789999999 6655552 45999999999
Q ss_pred cEEEEe
Q 010302 251 KVSRIL 256 (513)
Q Consensus 251 ~~v~~~ 256 (513)
++++.+
T Consensus 404 kvv~tI 409 (426)
T 3c75_H 404 EELRSV 409 (426)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999886
No 248
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.83 E-value=1.1e-07 Score=91.39 Aligned_cols=196 Identities=8% Similarity=-0.023 Sum_probs=123.2
Q ss_pred CeEecC-CCEEEEEeCCCcEEEEEccCCceeEE-EEcC-C-CCCcEEEEEEcCCCcceEEEEeCCC--------------
Q 010302 1 MQVSVD-GLLCCSISNDKSVKIYDVVNYDMMLM-IRLP-F-IPGAVEWVYKQGDVKAGLAISDRNS-------------- 62 (513)
Q Consensus 1 v~~s~d-g~~las~s~D~~v~iwd~~~~~~~~~-~~l~-~-~~~~v~~v~~s~~~~~~~l~s~~~d-------------- 62 (513)
++++++ |+++++.. ...|.+||.. ++.... .... . ....+..+.+.+++. +.++...+
T Consensus 76 i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~ 151 (314)
T 1pjx_A 76 CQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSS
T ss_pred EEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCC
Confidence 357888 77666544 4478999987 654322 1111 1 113477888988876 66665544
Q ss_pred -CeEEEEecCCCCCcceEEeecCCCCeEEEEEc----CCCCEE-EEEcCCCcEEEecCC-CCCCCCcceeeeecCCcccc
Q 010302 63 -SFVHIYDARADSNEPLISKKVHMGPVKVMRYN----PVFDTV-ISADDKGIIEYWSPH-TLQFPESEVSFRLKSDTNLF 135 (513)
Q Consensus 63 -~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~s----p~~~~l-~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 135 (513)
+.|..||.. ++.. .+..+......++|+ |+++.+ ++...++.|.+||+. +++.. ......
T Consensus 152 ~~~l~~~~~~---g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~---------~~~~~~ 218 (314)
T 1pjx_A 152 FGSIYCFTTD---GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE---------NKKVWG 218 (314)
T ss_dssp CEEEEEECTT---SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---------EEEEEE
T ss_pred CCeEEEECCC---CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc---------cceEEE
Confidence 456666653 3332 233344456889999 999765 555667889999874 22110 001112
Q ss_pred ccccCC-cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeec
Q 010302 136 EILKSK-TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEI 214 (513)
Q Consensus 136 ~~~~~~-~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~ 214 (513)
.+..+. ..+..++++++|+++++...++.|.+||..+++.+..+..+
T Consensus 219 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-------------------------------- 266 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-------------------------------- 266 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS--------------------------------
T ss_pred ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC--------------------------------
Confidence 223333 56889999999999888878899999998877654443210
Q ss_pred cccCCCCCCceEEcCCCCEEEEcccc--ceEEEEccc
Q 010302 215 EKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLHT 249 (513)
Q Consensus 215 ~~~~~~~~~~i~fd~~g~~li~~s~~--gi~v~d~~t 249 (513)
...+..++|+++|+.|..++.. +|..|++..
T Consensus 267 ----~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 267 ----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ----CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 0234578899999966665544 788888754
No 249
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.81 E-value=2.2e-07 Score=89.12 Aligned_cols=165 Identities=7% Similarity=0.000 Sum_probs=107.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC--CCCcEEEEEEcCCCcceEEEEeCC---------CCeEEEEe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF--IPGAVEWVYKQGDVKAGLAISDRN---------SSFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~--~~~~v~~v~~s~~~~~~~l~s~~~---------d~~I~iwd 69 (513)
++++++|+++++. +..|.+||..+++......... ....+..+.+.+++. +.++... ...-.+|.
T Consensus 59 i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~ 134 (297)
T 3g4e_A 59 VALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYS 134 (297)
T ss_dssp EEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEE
T ss_pred EEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEE
Confidence 4688999966653 5689999998877654443221 123578899999887 5554321 12345555
Q ss_pred cCCCCCcceEEeecCCCCeEEEEEcCCCCEE-EEEcCCCcEEEecC--CCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 70 ARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSP--HTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 70 ~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
+.. .++. ..+..+......++|+|+++.| ++.+.++.|.+|++ .++.+.. ......+..+...+..
T Consensus 135 ~d~-~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~---------~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 135 LFP-DHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN---------RRSVYKLEKEEQIPDG 203 (297)
T ss_dssp ECT-TSCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE---------EEEEEECCGGGCEEEE
T ss_pred EEC-CCCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC---------cEEEEECCCCCCCCCe
Confidence 531 2333 2333344456899999999866 55566788999976 3332100 0111222223456889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 147 IEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 147 v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
++++++|++.++...++.|..||..+|+.+..+.
T Consensus 204 ~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 204 MCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp EEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 9999999988888788899999999999887664
No 250
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.80 E-value=4.9e-07 Score=89.14 Aligned_cols=247 Identities=13% Similarity=0.024 Sum_probs=150.3
Q ss_pred CeEecCCCEEEEEe----------CCCcEEEEEccCCceeEEEEcCCC-----CCcEEEEEEcCCCcceEEEEeCCCCeE
Q 010302 1 MQVSVDGLLCCSIS----------NDKSVKIYDVVNYDMMLMIRLPFI-----PGAVEWVYKQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 1 v~~s~dg~~las~s----------~D~~v~iwd~~~~~~~~~~~l~~~-----~~~v~~v~~s~~~~~~~l~s~~~d~~I 65 (513)
|++||||+++..++ .+++|.+||..+++.+..+.+... ......+.++|+++.+++.....++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 57999999887765 367899999999998888775421 124556889999985443333347899
Q ss_pred EEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC-CCCCCcceeeeecCCccccccccCCcce
Q 010302 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 66 ~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
.++|+. +.+.+.++.... + ...+....+.+++.+.||.+.+.++.+ ++.. +.. ..... .-..++
T Consensus 163 sVID~~--t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~------~~~--~~~~~--~~~~~~ 227 (386)
T 3sjl_D 163 GVVDLE--GKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE------ITH--TEVFH--PEDEFL 227 (386)
T ss_dssp EEEETT--TTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCE------EEE--CCCCS--CTTSCB
T ss_pred EEEECC--CCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEE------Eee--cceec--cccccc
Confidence 999998 888888886322 1 233333456777888899888888865 3320 000 00110 011122
Q ss_pred -EEEEE-cCCCCEEEEEeCCCcEEEEEcCCCe--EEEEec-ccHHHHHHHhcCCCCccccccccccceeeeeeeccccCC
Q 010302 145 -SAIEV-SPDGKQFSITSPDRRIRVFWFRTGK--LRRVYD-ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 219 (513)
Q Consensus 145 -~~v~~-spdg~~l~s~s~D~~I~iwd~~tg~--~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~ 219 (513)
....| .++|+++. .+.++++.+.|+.++. .+..+. .....+ ...+ ..
T Consensus 228 ~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~-~~g~--------------------------~p 279 (386)
T 3sjl_D 228 INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER-ADGW--------------------------RP 279 (386)
T ss_dssp CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH-HTTE--------------------------EE
T ss_pred cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccc-cccc--------------------------cC
Confidence 12356 46786544 5668999999997654 222221 000000 0000 00
Q ss_pred CCCCceEEcCCCCEEEEccc-----------cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeecccc
Q 010302 220 APPSNAIFDESSNFLIYATL-----------LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 288 (513)
Q Consensus 220 ~~~~~i~fd~~g~~li~~s~-----------~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 288 (513)
.....++++++++.+..... ..|.++|+.++++++.+--.. +...+++
T Consensus 280 ~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lav------------------ 338 (386)
T 3sjl_D 280 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINV------------------ 338 (386)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEE------------------
T ss_pred CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEE------------------
Confidence 12235677888887776532 248899999999998873211 2222322
Q ss_pred ccccCCCCCCC--CeEEEeeecCceEEEEecCC
Q 010302 289 NANESKEPFSD--PTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 289 ~~~~~~~~~~d--~~l~~s~~~~~~i~i~~~~~ 319 (513)
.+| +.|+++...++.+.++.-.+
T Consensus 339 --------s~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 339 --------SQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp --------CSSSSCEEEEEETTTTEEEEEETTT
T ss_pred --------CCCCCeEEEEEcCCCCeEEEEECCC
Confidence 133 46788888899999997654
No 251
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.78 E-value=2.3e-06 Score=83.12 Aligned_cols=196 Identities=11% Similarity=0.018 Sum_probs=118.8
Q ss_pred eEecCCC-EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEE
Q 010302 2 QVSVDGL-LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS 80 (513)
Q Consensus 2 ~~s~dg~-~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~ 80 (513)
.|+|+++ ++++...++.|..||..+++.. .+.. +..+..+.+++++. ++++. . ..|.+||.. +++....
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~--~g~~~~~ 124 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKISDSK--QLIAS-D-DGLFLRDTA--TGVLTLH 124 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTE--EEEEE-T-TEEEEEETT--TCCEEEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC---CCcceEEEEeCCCe--EEEEE-C-CCEEEEECC--CCcEEEE
Confidence 6889754 5555557889999999876543 3332 35788899988877 55554 3 359999986 4443222
Q ss_pred eec----CCCCeEEEEEcCCCCEEEEEcCC----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 81 KKV----HMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 81 ~~~----h~~~V~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
... ....+.+++++|+|+++++...+ ....||.+.+++ +..+..+......++|+||
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~---------------~~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK---------------VTKLFADISIPNSICFSPD 189 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---------------EEEEEEEESSEEEEEECTT
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc---------------EEEeeCCCcccCCeEEcCC
Confidence 211 12358899999999977765421 223344221211 1112122235678999999
Q ss_pred CCEEEEE-eCCCcEEEEEcC--CC-eEE--EEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceE
Q 010302 153 GKQFSIT-SPDRRIRVFWFR--TG-KLR--RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI 226 (513)
Q Consensus 153 g~~l~s~-s~D~~I~iwd~~--tg-~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~ 226 (513)
|+.|..+ +.++.|.+||+. +| +.. ..+.. +. .....+..++
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--------------------------------~~-~~~~~p~gi~ 236 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID--------------------------------ST-GIKGGMDGSV 236 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE--------------------------------CT-TSSSEEEEEE
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEE--------------------------------CC-CCCCCCCeeE
Confidence 9977544 457899999986 55 310 00000 00 0001224678
Q ss_pred EcCCCCEEEEcc-ccceEEEEcccCcEEEEe
Q 010302 227 FDESSNFLIYAT-LLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 227 fd~~g~~li~~s-~~gi~v~d~~t~~~v~~~ 256 (513)
+|++|++.+... ..+|.+||. +++.+..+
T Consensus 237 ~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 237 CDAEGHIWNARWGEGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp ECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEECC-CCCEEEEE
Confidence 999999777654 346999998 67766655
No 252
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.78 E-value=8.8e-07 Score=89.06 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=104.6
Q ss_pred CeEecCCCEEEEEeCCC--cEEEEEccCCceeEEE-EcCC-CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSISNDK--SVKIYDVVNYDMMLMI-RLPF-IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~s~D~--~v~iwd~~~~~~~~~~-~l~~-~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
++|+++|++|+++..++ .|.+|+..++.....+ .+.. ....+..++++++... +++ +..++.|..||.. ...
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv-~d~~~~I~~~d~~--~~~ 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYF-VDSNKNFGRFNVK--TQE 251 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEE-ECTTCEEEEEETT--TCC
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEE-EECCCcEEEEECC--CCC
Confidence 57999999999888766 7888888765543333 1112 3355677888885443 444 5568899999986 333
Q ss_pred ceEEe-----ecCCCCe--EEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecC---Ccc-ccccccCCcce
Q 010302 77 PLISK-----KVHMGPV--KVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS---DTN-LFEILKSKTTV 144 (513)
Q Consensus 77 ~i~~~-----~~h~~~V--~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~v 144 (513)
...+ .++...- ..++|+|+ +.++++-..++.|+.|+.... . ..+.-.. +.. -......-..+
T Consensus 252 -~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~----~~~~g~~~~~g~~dg~~~~~~~~~P 325 (409)
T 3hrp_A 252 -VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C----EWFCGSATQKTVQDGLREEALFAQP 325 (409)
T ss_dssp -EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E----EEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred -EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E----EEEEeCCCCCCcCCCcccccEeCCC
Confidence 2332 1222222 38999995 666677777889999987531 0 0000000 000 00000112458
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEE
Q 010302 145 SAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLR 176 (513)
Q Consensus 145 ~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~ 176 (513)
..++++|+|+++++-+ .++.|+.|++.+|+..
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 8999999999888877 8899999998888754
No 253
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.76 E-value=1.1e-09 Score=108.83 Aligned_cols=147 Identities=14% Similarity=0.026 Sum_probs=82.2
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCC
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM 85 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~ 85 (513)
++..+++++.|+.|+.||..+++.+..+.. +.+.......++. ++++++.|+.|+.||.. +++.+..+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~--tG~~~w~~~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSK--NNEGLTKLPFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-----C--CEEECTTTCCEEEC-------CCSEECSCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEcCCC--EEEEeCCCCEEEEEECC--CCceeeeeeccC
Confidence 678899999999999999999998877764 2222222233443 67777889999999997 677666654331
Q ss_pred CC-eE-EEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCC
Q 010302 86 GP-VK-VMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 163 (513)
Q Consensus 86 ~~-V~-~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~ 163 (513)
.. +. +..+ ..+..+++++.++.+..||..+++. +..+..+. ...++|++..+++++.|+
T Consensus 80 ~~~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~--------------~w~~~~~~----~~~~~p~~~~v~~~~~dg 140 (369)
T 2hz6_A 80 PELVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEK--------------QQTLSSAF----ADSLSPSTSLLYLGRTEY 140 (369)
T ss_dssp HHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------------EEEEEEEE
T ss_pred ccccccCceE-ecCCEEEEEeCCCEEEEEECCCCcE--------------EEEecCCC----cccccccCCEEEEEecCC
Confidence 11 10 0011 1345677888899999999988543 22222221 234567888999999999
Q ss_pred cEEEEEcCCCeEEEEe
Q 010302 164 RIRVFWFRTGKLRRVY 179 (513)
Q Consensus 164 ~I~iwd~~tg~~~~~~ 179 (513)
.|+.||.++|+.+..+
T Consensus 141 ~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 141 TITMYDTKTRELRWNA 156 (369)
T ss_dssp EEECCCSSSSSCCCEE
T ss_pred EEEEEECCCCCEEEeE
Confidence 9999999999875544
No 254
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.74 E-value=2.6e-07 Score=90.63 Aligned_cols=167 Identities=11% Similarity=0.011 Sum_probs=107.2
Q ss_pred CeEecCCCEEEEEeC-----CCcEEEEEccCCceeEEEEcCC----CCCcEEEEEEcCCCcceEEEEeC---CCCeEEEE
Q 010302 1 MQVSVDGLLCCSISN-----DKSVKIYDVVNYDMMLMIRLPF----IPGAVEWVYKQGDVKAGLAISDR---NSSFVHIY 68 (513)
Q Consensus 1 v~~s~dg~~las~s~-----D~~v~iwd~~~~~~~~~~~l~~----~~~~v~~v~~s~~~~~~~l~s~~---~d~~I~iw 68 (513)
|+++++|+++++-.. +..|.+||+.+++.+..+.+.. +......+.+.+++. .++++.. .++.|.+|
T Consensus 72 v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 72 IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCEEEEE
T ss_pred EEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCeEEEE
Confidence 468899987775543 5789999999988777776532 123457788886543 2566665 67899999
Q ss_pred ecCCCCCcceEEeecCC-----------------------------CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCC
Q 010302 69 DARADSNEPLISKKVHM-----------------------------GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 119 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~-----------------------------~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 119 (513)
|+. +++..+.+.+|. ..+..++|+|+++.|+.+..++. ++|.+.....
T Consensus 151 d~~--~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~ 227 (343)
T 2qe8_A 151 DLQ--TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADL 227 (343)
T ss_dssp ETT--TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHH
T ss_pred ECC--CCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHh
Confidence 986 555555443321 23578999999998887776653 4453321000
Q ss_pred CCcceeeeecCCcccc--ccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q 010302 120 PESEVSFRLKSDTNLF--EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 175 (513)
Q Consensus 120 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~ 175 (513)
... .....+... ...++...+..++++++|+.+++...++.|.+||..+|+.
T Consensus 228 ~~~----~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 228 SNL----QLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp TCT----TCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred cCC----CCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence 000 000000001 1112344567899999999999988899999999867764
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=3.4e-06 Score=78.79 Aligned_cols=204 Identities=12% Similarity=0.026 Sum_probs=132.6
Q ss_pred CeEecCCCEEEEEeC--CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISN--DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~--D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|+|++||.+.++.+. +++|+++|+.+++.+..+.+..+.. ...+.+. +.. +.++...++.+.++|.. +.+.+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-geGi~~~--g~~-lyv~t~~~~~v~viD~~--t~~v~ 99 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-GEGLTLL--NEK-LYQVVWLKNIGFIYDRR--TLSNI 99 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-EEEEEEE--TTE-EEEEETTCSEEEEEETT--TTEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-eEEEEEe--CCE-EEEEEecCCEEEEEECC--CCcEE
Confidence 468898877776664 6899999999999998887654332 2344444 332 66666788999999997 88888
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc--cC---CcceEEEEEcCCC
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL--KS---KTTVSAIEVSPDG 153 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~v~~v~~spdg 153 (513)
.++...... ...++++++.++.+..++.|.++|+.+.+. +..+. .+ -..++.+.|. +|
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v--------------~~~I~Vg~~~~p~~~~nele~~-dg 162 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKL--------------IKKHNVKYNGHRVIRLNELEYI-NG 162 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCE--------------EEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcE--------------EEEEEECCCCcccccceeEEEE-CC
Confidence 888633111 233556887776667788999999988543 11111 11 1236788888 77
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 154 KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 154 ~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
+..+....++.|.+.|.++++.+..++-.. .......... .....+..++|+++++.
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g-~~~~~~~~~~----------------------~~~~v~nGIa~~~~~~~ 219 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPN-LRKKLIDEGF----------------------RDIDVLNGIAWDQENKR 219 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHH-HHHHHHHTTC----------------------TTCCCEEEEEEETTTTE
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCC-cccccccccc----------------------cccCceEEEEEcCCCCE
Confidence 666655568899999999999999886421 0000000000 11123467899999876
Q ss_pred EEEcc--ccceEEEEcccC
Q 010302 234 LIYAT--LLGIKIVNLHTN 250 (513)
Q Consensus 234 li~~s--~~gi~v~d~~t~ 250 (513)
+.... ...+.++++.+.
T Consensus 220 lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 220 IFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCCeEEEEEEecc
Confidence 55443 334667776554
No 256
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.62 E-value=3.6e-06 Score=84.33 Aligned_cols=108 Identities=9% Similarity=-0.017 Sum_probs=80.7
Q ss_pred cCCCEEEEEeC-C----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe--------CCCCeEEEEecC
Q 010302 5 VDGLLCCSISN-D----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD--------RNSSFVHIYDAR 71 (513)
Q Consensus 5 ~dg~~las~s~-D----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~--------~~d~~I~iwd~~ 71 (513)
++++++..+.. + ++|.++|..+++.+..+..... + .+.++|+++.++++.. ..++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~--P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL--P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS--C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC--C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 46776666554 3 6999999999999988876543 2 6899999997655542 246789999998
Q ss_pred CCCCcceEEeecC-------CCCeEEEEEcCCCCEEEEEcC--CCcEEEecCCCCC
Q 010302 72 ADSNEPLISKKVH-------MGPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQ 118 (513)
Q Consensus 72 ~~~~~~i~~~~~h-------~~~V~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~ 118 (513)
+.+.+..+... ......++++|+|++++.+.. ++.|.+.|+.+.+
T Consensus 158 --t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 158 --TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp --TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred --CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 88888877521 123457899999999988764 5789999998854
No 257
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.61 E-value=3.7e-07 Score=89.96 Aligned_cols=211 Identities=11% Similarity=-0.015 Sum_probs=122.2
Q ss_pred CeEecCCCEEEEEe----------CCCcEEEEEccCCceeEEEEcCCCC-----CcEEEEEEcCCCcceEEEEeCCCCeE
Q 010302 1 MQVSVDGLLCCSIS----------NDKSVKIYDVVNYDMMLMIRLPFIP-----GAVEWVYKQGDVKAGLAISDRNSSFV 65 (513)
Q Consensus 1 v~~s~dg~~las~s----------~D~~v~iwd~~~~~~~~~~~l~~~~-----~~v~~v~~s~~~~~~~l~s~~~d~~I 65 (513)
+.+||||+++..+. .+++|.+||+.+++.+..+.+.... .....+.++|+++.++++....+..+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v 149 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence 47999999888886 3789999999999999888764111 23456789999996444443345678
Q ss_pred EE--EecCCCCCcceEEeecCCCCeEEEEEcCCC-CEEEEEcCCCcEEEecCCC-----CCCC-----------------
Q 010302 66 HI--YDARADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHT-----LQFP----------------- 120 (513)
Q Consensus 66 ~i--wd~~~~~~~~i~~~~~h~~~V~~l~~sp~~-~~l~s~s~dg~i~iwd~~~-----~~~~----------------- 120 (513)
.+ +|.. + +..+..... ....|++ ..+++.+.|+.+.+.|+.+ ++..
T Consensus 150 ~V~~iD~~--t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~ 220 (368)
T 1mda_H 150 GLSVPGAS--D---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN 220 (368)
T ss_dssp EEEETTTE--E---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET
T ss_pred EEEEEchh--h---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccc
Confidence 88 8886 3 344431110 1112222 2223333444444444433 1100
Q ss_pred ----------CcceeeeecCCc--cccccc-------cCC---cceEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 010302 121 ----------ESEVSFRLKSDT--NLFEIL-------KSK---TTVSAIEVSPDGKQFSITSP---------DRRIRVFW 169 (513)
Q Consensus 121 ----------~~~~~~~~~~~~--~~~~~~-------~~~---~~v~~v~~spdg~~l~s~s~---------D~~I~iwd 169 (513)
......+..... .+..+. .+. .....++++||++.+..+.. +..+.++|
T Consensus 221 ~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD 300 (368)
T 1mda_H 221 YPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred cCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEE
Confidence 000111111000 000000 010 01112789999988776532 23566999
Q ss_pred cCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc---cceEEEE
Q 010302 170 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL---LGIKIVN 246 (513)
Q Consensus 170 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~---~gi~v~d 246 (513)
+.+++.+..+.- . ..+..++|+++|+.+++.+. ..|.|+|
T Consensus 301 ~~t~~vv~~i~v-----------------------------g--------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 301 ASVGQTSGPISN-----------------------------G--------HDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSSCCEEECCEE-----------------------------E--------EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEC-----------------------------C--------CCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 999988775531 0 02457899999996665543 4599999
Q ss_pred cccCcEEEEeC
Q 010302 247 LHTNKVSRILG 257 (513)
Q Consensus 247 ~~t~~~v~~~g 257 (513)
+.++++++.+.
T Consensus 344 ~~t~kvv~~I~ 354 (368)
T 1mda_H 344 AASDQDQSSVE 354 (368)
T ss_dssp SSSCEEEEECC
T ss_pred CCCCcEEEEEE
Confidence 99999999984
No 258
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.60 E-value=3.1e-06 Score=84.22 Aligned_cols=209 Identities=12% Similarity=0.056 Sum_probs=125.3
Q ss_pred eEecCCCEEEEEeCC------CcEEEEEccCCceeEEEEcCCCCCc-EEEEEEcCCCcceEEEEeC--------------
Q 010302 2 QVSVDGLLCCSISND------KSVKIYDVVNYDMMLMIRLPFIPGA-VEWVYKQGDVKAGLAISDR-------------- 60 (513)
Q Consensus 2 ~~s~dg~~las~s~D------~~v~iwd~~~~~~~~~~~l~~~~~~-v~~v~~s~~~~~~~l~s~~-------------- 60 (513)
..+||| +++++..+ +.|.++|.++++.+........+.. -..+.|+|+.+ .+++..
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~ 220 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLE 220 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTT
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC--EEEEccCcCccccccccchh
Confidence 467999 77777655 7899999999998888765433322 23467788888 666653
Q ss_pred -----CCCeEEEEecCCCCCcceEEeecC-C-CCeEEEEE--cCCCCEEEEEc------CCCcEEEecCCCCCCCCccee
Q 010302 61 -----NSSFVHIYDARADSNEPLISKKVH-M-GPVKVMRY--NPVFDTVISAD------DKGIIEYWSPHTLQFPESEVS 125 (513)
Q Consensus 61 -----~d~~I~iwd~~~~~~~~i~~~~~h-~-~~V~~l~~--sp~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~ 125 (513)
...+|.+||+. +.+.+.++... . .....+.| +|+++++..+. .+++|.+|....++. .....
T Consensus 221 ~~~~~~~d~V~v~D~~--~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-~~~~v 297 (462)
T 2ece_A 221 HLKDRYGNRIHFWDLR--KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-NAEKV 297 (462)
T ss_dssp THHHHSCCEEEEEETT--TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-EEEEE
T ss_pred hhhhccCCEEEEEECC--CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-eEEEE
Confidence 36899999997 67777777642 1 23445656 99999886666 455776654432211 00001
Q ss_pred eeecCCcc---c----cccccCCcceEEEEEcCCCCEEEEEeC-CCcEEEEEcCC---CeEEEEecccHHHHHHHhcCCC
Q 010302 126 FRLKSDTN---L----FEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRT---GKLRRVYDESLEVAQDLQRSDA 194 (513)
Q Consensus 126 ~~~~~~~~---~----~~~~~~~~~v~~v~~spdg~~l~s~s~-D~~I~iwd~~t---g~~~~~~~~~~~~i~~~~~~~~ 194 (513)
.+...... + ..+.+....+..|.+||||++|.++.. .+.|.+||+.. .+++..+.-.-..
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~--------- 368 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF--------- 368 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT---------
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee---------
Confidence 11111100 0 001111245788999999999987774 78999999863 3454443210000
Q ss_pred CccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc
Q 010302 195 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 238 (513)
Q Consensus 195 ~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s 238 (513)
...+.. -|+ .....+..+.++++|++|+.++
T Consensus 369 --~~~~~~-~G~----------~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 369 --HRADHP-AGH----------KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp --TCBCCT-TSC----------CCCSCCCCEEECTTSSEEEEEC
T ss_pred --cccccc-ccc----------cCCCCCCEEEEcCCCCEEEEEc
Confidence 000000 000 1122467899999999999887
No 259
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.58 E-value=7.3e-06 Score=79.55 Aligned_cols=162 Identities=10% Similarity=-0.000 Sum_probs=101.2
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC-C-CCcEEEEEEcCCCcceEEEEeCCC----CeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF-I-PGAVEWVYKQGDVKAGLAISDRNS----SFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~-~-~~~v~~v~~s~~~~~~~l~s~~~d----~~I~iwd~~~~~ 74 (513)
++++++|+++++. .+ .|.+||..+++......... . ...+..+.+++++. +.++...+ ....||.+. +
T Consensus 95 i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~ 168 (326)
T 2ghs_A 95 LAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--K 168 (326)
T ss_dssp EEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--T
T ss_pred EEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--C
Confidence 3678999988765 33 49999998877644333211 1 23578899999887 44443321 234444443 2
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEE-EEEcCCCcEEEecCC--CC-CCCCcceeeeecCCccccccccCCcceEEEEEc
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPH--TL-QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 150 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 150 (513)
++. ..+..+......++|+|+++.+ ++.+.++.|.+||+. ++ .+.. ......+......+..++++
T Consensus 169 g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~---------~~~~~~~~~~~~~p~gi~~d 238 (326)
T 2ghs_A 169 GKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------AEVFIDSTGIKGGMDGSVCD 238 (326)
T ss_dssp TEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------CEEEEECTTSSSEEEEEEEC
T ss_pred CcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC---------ceEEEECCCCCCCCCeeEEC
Confidence 332 2233333456789999999876 444567889999875 43 2100 01111222234557889999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 151 PDGKQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 151 pdg~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
++|+++++...++.|.+||. +++.+..+
T Consensus 239 ~~G~lwva~~~~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 239 AEGHIWNARWGEGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp TTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEECC-CCCEEEEE
Confidence 99998887767789999998 67665554
No 260
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.58 E-value=4e-06 Score=82.65 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=106.7
Q ss_pred EecCCCEEEEEeC-----CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe--------CCCCeEEEEe
Q 010302 3 VSVDGLLCCSISN-----DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD--------RNSSFVHIYD 69 (513)
Q Consensus 3 ~s~dg~~las~s~-----D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~--------~~d~~I~iwd 69 (513)
..|+++.+..... +++|.+.|..+++.+..+.....+ . +.++|+++.++++.. ..++.|.+||
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P---~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP---N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC---E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC---c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4689988887765 689999999999998887754332 4 899999997555542 2467899999
Q ss_pred cCCCCCcceEEeecCC-------CCeEEEEEcCCCCEEEEEcC--CCcEEEecCCCCCCCCcceeeeecCCccccccccC
Q 010302 70 ARADSNEPLISKKVHM-------GPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 140 (513)
Q Consensus 70 ~~~~~~~~i~~~~~h~-------~~V~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (513)
.. +.+.+.++.... ..-..++|+|||++++.+.. ++.|.++|+.+.+. +.++.-.
T Consensus 116 ~~--t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v--------------v~tI~v~ 179 (386)
T 3sjl_D 116 PV--TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--------------KRMLDVP 179 (386)
T ss_dssp TT--TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--------------EEEEECC
T ss_pred CC--CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE--------------EEEEECC
Confidence 98 888888875321 23457999999999887763 68999999988442 3333211
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeE
Q 010302 141 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKL 175 (513)
Q Consensus 141 ~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t-g~~ 175 (513)
+ . ...+....+.+++.+.||++.+.++.+ ++.
T Consensus 180 -g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 180 -D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp -S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred -C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 1 1 123333456777888899999988876 665
No 261
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.55 E-value=2e-05 Score=78.42 Aligned_cols=206 Identities=13% Similarity=0.158 Sum_probs=125.9
Q ss_pred cCCCEEEEEe-CCCcEEEEEccCC----ceeEEEE---c--CCCCCcEEEEEEcCCCcceEEEEeCCC------CeEEEE
Q 010302 5 VDGLLCCSIS-NDKSVKIYDVVNY----DMMLMIR---L--PFIPGAVEWVYKQGDVKAGLAISDRNS------SFVHIY 68 (513)
Q Consensus 5 ~dg~~las~s-~D~~v~iwd~~~~----~~~~~~~---l--~~~~~~v~~v~~s~~~~~~~l~s~~~d------~~I~iw 68 (513)
+++++|...+ .+.+|.|+|+.+. +....+. + +........+..+|++ +++++..+ +.|.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEE
Confidence 7888776655 6889999999765 4444442 1 0011234566778887 44444443 789999
Q ss_pred ecCCCCCcceEEeecCCCC---eEEEEEcCCCCEEEEEc-------------------CCCcEEEecCCCCCCCCcceee
Q 010302 69 DARADSNEPLISKKVHMGP---VKVMRYNPVFDTVISAD-------------------DKGIIEYWSPHTLQFPESEVSF 126 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~~~---V~~l~~sp~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~~ 126 (513)
|.. +.+.+.++.....+ -..+.|+|+++.+++.. .+.+|.+||+.+.+
T Consensus 170 D~~--T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-------- 239 (462)
T 2ece_A 170 DHY--SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-------- 239 (462)
T ss_dssp CTT--TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--------
T ss_pred ECC--CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--------
Confidence 997 88888888722222 34588899999988885 36789999997632
Q ss_pred eecCCcccccccc--CCcceEEEEE--cCCCCEEEEEe------CCCcEEEEEcCCCeEEE--EecccHHHHHHHhcCCC
Q 010302 127 RLKSDTNLFEILK--SKTTVSAIEV--SPDGKQFSITS------PDRRIRVFWFRTGKLRR--VYDESLEVAQDLQRSDA 194 (513)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~v~~v~~--spdg~~l~s~s------~D~~I~iwd~~tg~~~~--~~~~~~~~i~~~~~~~~ 194 (513)
.+.++.- .......+.| +|+++++.+++ .+++|.+|....|+... .++
T Consensus 240 ------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-------------- 299 (462)
T 2ece_A 240 ------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-------------- 299 (462)
T ss_dssp ------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE--------------
T ss_pred ------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe--------------
Confidence 2223322 1234556666 99999887666 56789888876655321 111
Q ss_pred Cccccccccccceee-eeeeccccCCCCCCceEEcCCCCEEEEcccc--ceEEEEcc
Q 010302 195 PLYRLEAIDFGRRMA-VEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLH 248 (513)
Q Consensus 195 ~~~~l~~~~~~~r~~-~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~--gi~v~d~~ 248 (513)
+........+. +..... ........+.++++|++|..++.. .|.++|+.
T Consensus 300 ----i~~~~v~~~lp~~~~~f~-~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 300 ----IPAEPLEGNLPEILKPFK-AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ----ECCEECCSSCCGGGGGGT-EECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ----CCCccccccccccccccc-cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 00000000000 000000 001346788999999999887654 59999985
No 262
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.52 E-value=2.8e-06 Score=81.63 Aligned_cols=189 Identities=12% Similarity=0.030 Sum_probs=116.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEc-CC-CCCcEEEEEEcCCCcceEEEE----eCC-------------
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRL-PF-IPGAVEWVYKQGDVKAGLAIS----DRN------------- 61 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l-~~-~~~~v~~v~~s~~~~~~~l~s----~~~------------- 61 (513)
++++++|+++++...++.|.+|+.. ++....... .. ....+..+.+.+++. +.++ +..
T Consensus 91 l~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 91 NAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSS
T ss_pred eeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccC
Confidence 4688999977765566889999985 553322211 11 112356688888887 6775 221
Q ss_pred CCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC------CcEEEecCCCCCCCCcceeeeecCCcccc
Q 010302 62 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK------GIIEYWSPHTLQFPESEVSFRLKSDTNLF 135 (513)
Q Consensus 62 d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 135 (513)
.+.|..||.. +++..... +......++|+|+++.|+.+... +.|.+|++....+ .. .....
T Consensus 168 ~~~v~~~d~~--~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~--------~~~~~ 234 (305)
T 3dr2_A 168 HHSVYRLPPD--GSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HD--------RRHFA 234 (305)
T ss_dssp CEEEEEECSS--SCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EE--------EEEEE
T ss_pred CCeEEEEcCC--CCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cC--------CeEEE
Confidence 2456777764 44433322 34556889999999987766654 6788888754211 00 00010
Q ss_pred ccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeecc
Q 010302 136 EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 215 (513)
Q Consensus 136 ~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~ 215 (513)
. ...+.+..++++++|++.++. .+ .|.+|+. +++.+..+..
T Consensus 235 ~--~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~---------------------------------- 275 (305)
T 3dr2_A 235 S--VPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPT---------------------------------- 275 (305)
T ss_dssp C--CSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEEC----------------------------------
T ss_pred E--CCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEEC----------------------------------
Confidence 1 123345678999999965543 44 4999987 5666655531
Q ss_pred ccCCCCCCceEEcCCCCEEEEccccceEEEEc
Q 010302 216 KTETAPPSNAIFDESSNFLIYATLLGIKIVNL 247 (513)
Q Consensus 216 ~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~ 247 (513)
. ..+.+++|+++++.|..++..++..+++
T Consensus 276 -~--~~~~~~~f~~d~~~L~it~~~~l~~~~~ 304 (305)
T 3dr2_A 276 -P--GTASNCTFDQAQQRLFITGGPCLWMLPL 304 (305)
T ss_dssp -S--SCCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred -C--CceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence 0 1246789999998888777777655543
No 263
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.52 E-value=4.3e-06 Score=77.22 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=108.2
Q ss_pred CeEecCCCEEEEEeCCC--cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDK--SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~--~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
|.|+ ++.++.+++.++ +|+++|+++++.+..+.+....- -..+.. ++.. +.+....++.+.+||.. +.+.+
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F-geGit~--~g~~-ly~ltw~~~~v~v~D~~--t~~~~ 120 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF-GEGISD--WKDK-IVGLTWKNGLGFVWNIR--NLRQV 120 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC-EEEEEE--ETTE-EEEEESSSSEEEEEETT--TCCEE
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc-eeEEEE--eCCE-EEEEEeeCCEEEEEECc--cCcEE
Confidence 3577 788888888776 99999999999998887653221 222333 2333 45556678999999998 88999
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC---cceEEEEEcCCCCE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK---TTVSAIEVSPDGKQ 155 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~spdg~~ 155 (513)
.++..... ...++++++.|+.++.++.|.++|+.+++.... +.. .... ..++.+.|. +|+.
T Consensus 121 ~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~-----------I~V-~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 121 RSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT-----------ITV-TAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEE-----------EEC-EETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE-----------EEe-ccCCccccccceeEEE-CCEE
Confidence 88874322 233345777777666678899999988553111 111 1111 235567776 7776
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
.+..-.+..|.+.|.++|+.+..++-
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred EEEEccCCeEEEEECCCCcEEEEEEC
Confidence 66555688999999999999998864
No 264
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.51 E-value=1.4e-05 Score=85.81 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=101.2
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC---CCcceEEEEeC-----CCCeEEEEecCCCCCcc
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG---DVKAGLAISDR-----NSSFVHIYDARADSNEP 77 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~---~~~~~~l~s~~-----~d~~I~iwd~~~~~~~~ 77 (513)
++..++.++.|+.|..+|..+++.+-......+......+..+| ++. +++..+ .++.|..||.+ +++.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~--tG~~ 195 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAE--TGKE 195 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETT--TCCE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECC--CCcE
Confidence 45678888899999999999999887776531111111111111 222 444332 36899999998 8887
Q ss_pred eEEeecC--C-----------------------------CCeEEEEEcCCCCEEEEEcCCCc------------------
Q 010302 78 LISKKVH--M-----------------------------GPVKVMRYNPVFDTVISADDKGI------------------ 108 (513)
Q Consensus 78 i~~~~~h--~-----------------------------~~V~~l~~sp~~~~l~s~s~dg~------------------ 108 (513)
+..+... . .....++++|+.++++.++.++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 7766411 0 01125788998899988887764
Q ss_pred -EEEecCCCCCCCCcceeeeecCCcc-ccccccCCcceEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 109 -IEYWSPHTLQFPESEVSFRLKSDTN-LFEILKSKTTVSAIEVSPDGK---QFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 109 -i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~spdg~---~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
|..||..+++. .|.++.... ...+. ....+.......+|+ .++.++.+|.++++|.++|+++...
T Consensus 276 ~v~AlD~~TG~~-----~W~~~~~~~d~wd~~-~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 276 SIVAVNADTGEY-----VWHYQTTPGDAWDYT-ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEETTTCCE-----EEEEESSTTCCSCCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEEccCCce-----eEeeecCCccccccc-CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 88888887653 344332110 00000 112222222233665 7888899999999999999998654
No 265
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.51 E-value=1.1e-05 Score=86.62 Aligned_cols=165 Identities=12% Similarity=0.058 Sum_probs=103.0
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcC-CCCCcEEEEEEcC--CCcceEEEEeC-----CCCeEEEEecCCCCCcc
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLP-FIPGAVEWVYKQG--DVKAGLAISDR-----NSSFVHIYDARADSNEP 77 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~-~~~~~v~~v~~s~--~~~~~~l~s~~-----~d~~I~iwd~~~~~~~~ 77 (513)
++..+..++.|+.|..+|..+++.+-..... ..... ..+..+| ... .+++..+ .++.|..+|.. +++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~-~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~--tG~~ 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGS-LTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAE--TGER 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSS-CBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETT--TCCE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcC-cccccCcEEECC-EEEEEecccccCCCCEEEEEECC--CCcE
Confidence 4567888889999999999999998887754 11000 0000011 112 1333332 26899999998 8888
Q ss_pred eEEeecCCCC--------------------------------eEEEEEcCCCCEEEEEcCCC------------------
Q 010302 78 LISKKVHMGP--------------------------------VKVMRYNPVFDTVISADDKG------------------ 107 (513)
Q Consensus 78 i~~~~~h~~~--------------------------------V~~l~~sp~~~~l~s~s~dg------------------ 107 (513)
+..+...... ...++++|++++++.++.++
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 8776532111 13578899988888877664
Q ss_pred -cEEEecCCCCCCCCcceeeeecCCcc-ccccccCCcceEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 108 -IIEYWSPHTLQFPESEVSFRLKSDTN-LFEILKSKTTVSAIEVSPDG---KQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 108 -~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~spdg---~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
.|..+|..+++. .|.++.... ...... ...+..+....+| ..++.++.+|.++++|.++|+.+..+.
T Consensus 283 ~sv~AlD~~TG~~-----~W~~~~~~~d~wd~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 283 ASIVALDPDTGKY-----KWHYQETPGDNWDYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp TEEEEECTTTCCE-----EEEEESSTTCCSCCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEECCCCCE-----EEEEecCCCccccccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 478888887653 444332110 000001 1222333444578 678889999999999999999987764
No 266
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.49 E-value=9.1e-06 Score=87.53 Aligned_cols=157 Identities=10% Similarity=0.007 Sum_probs=102.2
Q ss_pred CeEecCCCEEEEEeCCCc-------------EEEEEccCCce--eEEEEcCC-CCCcEEEEEEcCCCcceEEEEeC--CC
Q 010302 1 MQVSVDGLLCCSISNDKS-------------VKIYDVVNYDM--MLMIRLPF-IPGAVEWVYKQGDVKAGLAISDR--NS 62 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~-------------v~iwd~~~~~~--~~~~~l~~-~~~~v~~v~~s~~~~~~~l~s~~--~d 62 (513)
++|| ||+.|+.++.|.. |++|++.+... ........ ++.....+.++++++.+++.+.. ..
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 5799 9999999988754 99999987653 33333333 44557788999999865444432 23
Q ss_pred CeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEE-EEEcCC---CcEEEecCCCCCCCCcceeeeecCCccccccc
Q 010302 63 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 138 (513)
Q Consensus 63 ~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l-~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (513)
..|.++|+.... .....+..+....... |+++++.| ++...+ +.|..+|+.+... .....+.
T Consensus 259 ~~i~~~d~~~~~-~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------------~~~~~l~ 324 (693)
T 3iuj_A 259 NRLYVKDLSQEN-APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------------AHWRDLI 324 (693)
T ss_dssp CEEEEEETTSTT-CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG------------GGCEEEE
T ss_pred cEEEEEECCCCC-CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc------------cccEEEe
Confidence 589999986222 2445566666666655 66766655 444443 5688888866321 1123455
Q ss_pred cCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCe
Q 010302 139 KSKTTVSAIEVSPDGKQFSITSP-DR--RIRVFWFRTGK 174 (513)
Q Consensus 139 ~~~~~v~~v~~spdg~~l~s~s~-D~--~I~iwd~~tg~ 174 (513)
.|...+. .|++++++|+.... ++ .|++||+..+.
T Consensus 325 ~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 325 PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 5555554 89999998887664 43 68888887544
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=1e-05 Score=74.70 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=109.0
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
.|+ ++.+..+.+.++.|+++|+++++.+..+ +.... ....+.. .+.. +.+....++.+.+||.. +.+.+.++
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~-FgeGit~--~g~~-Ly~ltw~~~~v~V~D~~--Tl~~~~ti 132 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI-FAEGLAS--DGER-LYQLTWTEGLLFTWSGM--PPQRERTT 132 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC-CEEEEEE--CSSC-EEEEESSSCEEEEEETT--TTEEEEEE
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc-ceeEEEE--eCCE-EEEEEccCCEEEEEECC--cCcEEEEE
Confidence 454 4677888889999999999999998887 65322 1233444 3444 45556678999999998 88999888
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC---cceEEEEEcCCCCEEEE
Q 010302 82 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK---TTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~spdg~~l~s 158 (513)
...... ..++ ++++.|+.+..++.|.++|+.+++.... +. ...+. ..++.+.|. +|+..+.
T Consensus 133 ~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-----------I~-V~~~g~~v~~lNeLe~~-dG~lyan 196 (268)
T 3nok_A 133 RYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-----------VQ-VKLRGQPVELINELECA-NGVIYAN 196 (268)
T ss_dssp ECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-----------EE-CEETTEECCCEEEEEEE-TTEEEEE
T ss_pred eCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-----------EE-eCCCCcccccccccEEe-CCEEEEE
Confidence 743222 3444 5778887777788999999988653111 11 11111 235677776 7776655
Q ss_pred EeCCCcEEEEEcCCCeEEEEeccc
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~~~ 182 (513)
.-.+..|.+.|.++|+.+..++-.
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECH
T ss_pred ECCCCeEEEEeCCCCcEEEEEECC
Confidence 556889999999999999998754
No 268
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.41 E-value=3.1e-05 Score=76.20 Aligned_cols=102 Identities=6% Similarity=-0.095 Sum_probs=76.2
Q ss_pred EEEEEeCCC----cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe--------CCCCeEEEEecCCCCCc
Q 010302 9 LCCSISNDK----SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD--------RNSSFVHIYDARADSNE 76 (513)
Q Consensus 9 ~las~s~D~----~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~--------~~d~~I~iwd~~~~~~~ 76 (513)
.+++-..++ +|.++|..+++.+..+.....+ .+.++|+++.++++.. ..++.|.+||+. +.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P----~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~--T~~ 107 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS----LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV--TFL 107 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC----EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--TCC
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC----ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCC
Confidence 344444455 8889999999999888765433 6899999997555542 347889999998 889
Q ss_pred ceEEeecCC-------CCeEEEEEcCCCCEEEEEcC--CCcEEE--ecCCC
Q 010302 77 PLISKKVHM-------GPVKVMRYNPVFDTVISADD--KGIIEY--WSPHT 116 (513)
Q Consensus 77 ~i~~~~~h~-------~~V~~l~~sp~~~~l~s~s~--dg~i~i--wd~~~ 116 (513)
.+.++..+. .....++++|||++++.+.. +..+.+ +|+.+
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 999886431 23467999999999988764 457888 99855
No 269
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.35 E-value=0.00027 Score=66.01 Aligned_cols=197 Identities=11% Similarity=-0.009 Sum_probs=119.0
Q ss_pred CeEecCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
++|+++++.|..+ ...+.|..++..+........ ........+.+.+++.. +.++....+.|.++++. +....
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~---g~~~~ 114 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD---GTQRR 114 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT---SCSCE
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcC---CCCEE
Confidence 4678866555544 457899999987654433221 22246788888876543 66677778899999985 22223
Q ss_pred Eee-cCCCCeEEEEEcCCCCEEEEEcC---CCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCC
Q 010302 80 SKK-VHMGPVKVMRYNPVFDTVISADD---KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGK 154 (513)
Q Consensus 80 ~~~-~h~~~V~~l~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~ 154 (513)
.+. ........++++|++..|..+.. .+.|..+++... ....+. ..-.....++++|++.
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~---------------~~~~~~~~~~~~P~gia~d~~~~ 179 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---------------NRRILAQDNLGLPNGLTFDAFSS 179 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---------------CCEEEECTTCSCEEEEEEETTTT
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC---------------CcEEEEECCCCCCcEEEEcCCCC
Confidence 332 22245689999997665544443 367777766431 111111 1224688999999877
Q ss_pred EEEEEe-CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 155 QFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 155 ~l~s~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
.|..+. ..+.|.++|.........+.. ...+..++.+ +..
T Consensus 180 ~lyv~d~~~~~I~~~~~~g~~~~~~~~~-------------------------------------~~~P~gi~~d--~~~ 220 (267)
T 1npe_A 180 QLCWVDAGTHRAECLNPAQPGRRKVLEG-------------------------------------LQYPFAVTSY--GKN 220 (267)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEEEEEC-------------------------------------CCSEEEEEEE--TTE
T ss_pred EEEEEECCCCEEEEEecCCCceEEEecC-------------------------------------CCCceEEEEe--CCE
Confidence 665444 578899999865432221110 0112345555 344
Q ss_pred EEEcc--ccceEEEEcccCcEEEEeC
Q 010302 234 LIYAT--LLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 234 li~~s--~~gi~v~d~~t~~~v~~~g 257 (513)
|..+. ...|.++|..+|+.+..+.
T Consensus 221 lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 221 LYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCeEEEEeCCCCCceEEEc
Confidence 44443 2459999999999988874
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.32 E-value=8.6e-05 Score=71.64 Aligned_cols=235 Identities=12% Similarity=0.058 Sum_probs=134.3
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC------------------CCCcEEEEEEcC-CCcceEEEEeCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF------------------IPGAVEWVYKQG-DVKAGLAISDRN 61 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~------------------~~~~v~~v~~s~-~~~~~~l~s~~~ 61 (513)
++|+++|+++.++..++.|..||..+++... +.... .......+.+.+ ++. ++++...
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~v~d~~ 100 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LYIVDCY 100 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EEEEETT
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc--EEEEECC
Confidence 4678899877778888999999987655432 22110 013467788876 554 5555443
Q ss_pred CCeEEEEecCCCCCcceEEeec-----CCCCeEEEEEcC-CCCEEEEEcC-----------------CCcEEEecCCCCC
Q 010302 62 SSFVHIYDARADSNEPLISKKV-----HMGPVKVMRYNP-VFDTVISADD-----------------KGIIEYWSPHTLQ 118 (513)
Q Consensus 62 d~~I~iwd~~~~~~~~i~~~~~-----h~~~V~~l~~sp-~~~~l~s~s~-----------------dg~i~iwd~~~~~ 118 (513)
+.|..+|.. .+. +..+.. .......+++.+ +|++.++-.. ++.|..||..+++
T Consensus 101 -~~i~~~d~~--~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 101 -YHLSVVGSE--GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp -TEEEEECTT--CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred -CCEEEEeCC--CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 447888874 332 222221 113467899999 8987776543 2556677664422
Q ss_pred CCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcc
Q 010302 119 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 197 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~-s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 197 (513)
+..+...-.....++|+|+|+.|..+ +..+.|.+|++..... +
T Consensus 177 ---------------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-----~---------------- 220 (322)
T 2fp8_A 177 ---------------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-----G---------------- 220 (322)
T ss_dssp ---------------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-----T----------------
T ss_pred ---------------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-----C----------------
Confidence 11111111235679999999866544 5568899998764210 0
Q ss_pred ccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc-----------cceEEEEcccCcEEEEeCCCCccchhh
Q 010302 198 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-----------LGIKIVNLHTNKVSRILGKVENNDRFL 266 (513)
Q Consensus 198 ~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~-----------~gi~v~d~~t~~~v~~~g~~~~~~r~~ 266 (513)
..+... ++ .. +..+++|++|++.+.... ..|.++|. .|+.+..+...++. .+.
T Consensus 221 -------~~~~~~--~~----~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~-~~~ 284 (322)
T 2fp8_A 221 -------TAEVLV--KI----PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPF-AGE 284 (322)
T ss_dssp -------CEEEEE--EC----SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTT-TTS
T ss_pred -------ccceEE--eC----CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCC-ccc
Confidence 000000 00 01 457899999997776543 34777777 47777766433210 000
Q ss_pred eeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 267 RIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
.. ..+. ..+..|+.+....++|..|...
T Consensus 285 ~~------------~~~~------------~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 285 HF------------EQIQ------------EHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CC------------CEEE------------EETTEEEEECSSCSEEEEEEC-
T ss_pred cc------------eEEE------------EeCCEEEEeecCCCceEEEecc
Confidence 00 0000 1356788888888889888644
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.0001 Score=67.46 Aligned_cols=157 Identities=16% Similarity=0.073 Sum_probs=106.4
Q ss_pred eEecCCCEEEEEeCC--CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSVDGLLCCSISND--KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~s~D--~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
.|+. +.++.+.+.+ .+|+.+|+.+++.+..+.+....-. ..+... +.. +.+....++.+.+||.. +.+.+.
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~~--~~~-ly~ltw~~~~v~v~D~~--tl~~~~ 99 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVAW--RDR-LIQLTWRNHEGFVYDLA--TLTPRA 99 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEEE--TTE-EEEEESSSSEEEEEETT--TTEEEE
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEEe--CCE-EEEEEeeCCEEEEEECC--cCcEEE
Confidence 4554 6777777775 4899999999999998887644322 223332 333 55556778999999998 889999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC---cceEEEEEcCCCCEE
Q 010302 80 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK---TTVSAIEVSPDGKQF 156 (513)
Q Consensus 80 ~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~spdg~~l 156 (513)
++...... ..++ ++++.|+.+..++.|.++|+.+++.... + ....+. ..++.+.|. +|+..
T Consensus 100 ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~-----------I-~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 100 RFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS-----------I-KVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE-----------E-ECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE-----------E-EEccCCcccccceeeEEe-CCEEE
Confidence 88743322 3444 5677666666788999999988553111 1 111111 235566765 77766
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 157 SITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 157 ~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
+..-.+..|.+.|.++|+.+..++-
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEEC
T ss_pred EEECCCCeEEEEECCCCCEEEEEEC
Confidence 5555688999999999999998874
No 272
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.24 E-value=1.5e-05 Score=82.13 Aligned_cols=158 Identities=8% Similarity=-0.032 Sum_probs=98.2
Q ss_pred cCCCEEEEEe------------------CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC----
Q 010302 5 VDGLLCCSIS------------------NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS---- 62 (513)
Q Consensus 5 ~dg~~las~s------------------~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d---- 62 (513)
|+++++..++ .++.+.+.|..+.+....+..... ...+..++++.. +++++...
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~-~~vt~~~se~~~ 220 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKW-AFSTSYNSEKGM 220 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSE-EEEEESCTTCCS
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCE-EEEEecCcccCc
Confidence 8999988874 246899999999988888776543 344557777763 22232222
Q ss_pred ---------------------------------CeEEEEecCCCCCcc-eEEeecCCCCeEEEEEcCCCCEEEEEc-CCC
Q 010302 63 ---------------------------------SFVHIYDARADSNEP-LISKKVHMGPVKVMRYNPVFDTVISAD-DKG 107 (513)
Q Consensus 63 ---------------------------------~~I~iwd~~~~~~~~-i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg 107 (513)
+.|.+.|.....++. +..+.... ...++.++|||++++.++ .+.
T Consensus 221 ~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~ 299 (595)
T 1fwx_A 221 TLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSP 299 (595)
T ss_dssp SHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSS
T ss_pred chhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCC
Confidence 136666765101334 45554322 346899999999886655 678
Q ss_pred cEEEecCCCCCCCCcceeee--ecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010302 108 IIEYWSPHTLQFPESEVSFR--LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~t 172 (513)
+|.++|+.+.+.. ++ .+....+..-..-...+..++|+|+|...++.-.|+.|.+||+.+
T Consensus 300 ~VsVid~~~~~~~-----~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 300 TVTVLDVTRFDAV-----FYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BEEEEEGGGHHHH-----HHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred eEEEEECcccccc-----cccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 9999998753100 00 000011111112334688999999994344555799999999876
No 273
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.23 E-value=4.3e-05 Score=78.69 Aligned_cols=222 Identities=12% Similarity=0.005 Sum_probs=131.2
Q ss_pred cCCCEEEEEeC-CCcEEEEEccCCceeEEEEcCCCCCcEEEEEE-c-CCCcceEEEEe-----------------CCCCe
Q 010302 5 VDGLLCCSISN-DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYK-Q-GDVKAGLAISD-----------------RNSSF 64 (513)
Q Consensus 5 ~dg~~las~s~-D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~-s-~~~~~~~l~s~-----------------~~d~~ 64 (513)
+||++|..+.. +.+|.+.|+.+++...++.++.. .....+.+ + |++.. +++++ ..++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~-v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNY-VFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSE-EEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcE-EEEecccccccCCCCcccccccccCce
Confidence 38888877764 56799999999998887776532 34667776 4 67763 23332 33557
Q ss_pred EEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC---------------cEEEecCCCC---------CCC
Q 010302 65 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG---------------IIEYWSPHTL---------QFP 120 (513)
Q Consensus 65 I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg---------------~i~iwd~~~~---------~~~ 120 (513)
+.+.|.. +.+.+..+.-.. .-..++++|+|+++++++.+. .+.+.|.... ...
T Consensus 177 vtvID~~--t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 177 FTAVDAD--KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEETT--TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEEEECC--CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 8999987 777777776322 235678999999998887553 2334332110 000
Q ss_pred CcceeeeecC--Ccc-ccccccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCc
Q 010302 121 ESEVSFRLKS--DTN-LFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL 196 (513)
Q Consensus 121 ~~~~~~~~~~--~~~-~~~~~~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~ 196 (513)
...-..+..+ +.. +..+. -...+.++.++|||+++++++ .+.+|.++|+.+.+.. +++.
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~--~~~~-------------- 316 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FYEN-------------- 316 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HHSC--------------
T ss_pred CcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc--cccc--------------
Confidence 1112223322 112 11221 122466899999999887766 5889999998764311 0100
Q ss_pred cccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc--ccceEEEEccc----------CcEEEEeCC
Q 010302 197 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT--LLGIKIVNLHT----------NKVSRILGK 258 (513)
Q Consensus 197 ~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s--~~gi~v~d~~t----------~~~v~~~g~ 258 (513)
+ +... .+..++ .....+..++|+++| ++.... ...|.+||+.+ .+++..+..
T Consensus 317 --l---~~~~--~v~~~v--~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 317 --A---DPRS--AVVAEP--ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp --C---CGGG--GEEECC--BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred --c---Cccc--ceEEEc--CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence 0 0011 111111 223456788999999 433332 22488999988 667766643
No 274
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.22 E-value=0.0011 Score=61.75 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=129.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCcee-----EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEe
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMM-----LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~-----~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~ 81 (513)
|.+|..+.. +.|+.+++...... ..+. ........+.+.+.+.. +.++...++.|..+++. .......+
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~--g~~~~~~~ 74 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLH--GGEPTTII 74 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESS--SCCCEEEE
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecC--CCCcEEEE
Confidence 345555543 47888888754321 1222 11235678888876543 66777778899999986 33333333
Q ss_pred ecCCCCeEEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcCCCCEEEEE
Q 010302 82 KVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 82 ~~h~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~s~ 159 (513)
.........++++|++..+ ++-...+.|.++++.... ...+.. ....+..++++|++..|..+
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------------~~~~~~~~~~~P~~i~vd~~~g~lyv~ 139 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---------------RRVLFDTGLVNPRGIVTDPVRGNLYWT 139 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------CEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---------------EEEEEECCCCCccEEEEeeCCCEEEEE
Confidence 2333567899999976555 555567789888875311 111111 12457899999976655444
Q ss_pred eC---CCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEE
Q 010302 160 SP---DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 236 (513)
Q Consensus 160 s~---D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~ 236 (513)
.. .+.|..+++.. +....+.. .....+..+++|++++.|..
T Consensus 140 ~~~~~~~~I~~~~~dg-~~~~~~~~-----------------------------------~~~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 140 DWNRDNPKIETSHMDG-TNRRILAQ-----------------------------------DNLGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp ECCSSSCEEEEEETTS-CCCEEEEC-----------------------------------TTCSCEEEEEEETTTTEEEE
T ss_pred ECCCCCcEEEEEecCC-CCcEEEEE-----------------------------------CCCCCCcEEEEcCCCCEEEE
Confidence 43 35677776542 21111100 01123457899998887766
Q ss_pred ccc--cceEEEEcccCcEEEEeCCCCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 010302 237 ATL--LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 314 (513)
Q Consensus 237 ~s~--~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i 314 (513)
+.. ..|.++|+.++.....+..- ..| ..+.. .+..|+++....++|++
T Consensus 184 ~d~~~~~I~~~~~~g~~~~~~~~~~-------------~~P-----~gi~~------------d~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 184 VDAGTHRAECLNPAQPGRRKVLEGL-------------QYP-----FAVTS------------YGKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EETTTTEEEEEETTEEEEEEEEECC-------------CSE-----EEEEE------------ETTEEEEEETTTTEEEE
T ss_pred EECCCCEEEEEecCCCceEEEecCC-------------CCc-----eEEEE------------eCCEEEEEECCCCeEEE
Confidence 543 35888888765433222100 001 01111 24567888888889999
Q ss_pred EecCC
Q 010302 315 FSRRE 319 (513)
Q Consensus 315 ~~~~~ 319 (513)
++..+
T Consensus 234 ~d~~~ 238 (267)
T 1npe_A 234 MDLAI 238 (267)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 97654
No 275
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.13 E-value=5.6e-05 Score=80.96 Aligned_cols=162 Identities=12% Similarity=0.095 Sum_probs=108.0
Q ss_pred eEecCCCEEEEEeCCC-------------------cEEEEEccCCceeEEEEcCCCC-------CcEEEEEEcCCCcc-e
Q 010302 2 QVSVDGLLCCSISNDK-------------------SVKIYDVVNYDMMLMIRLPFIP-------GAVEWVYKQGDVKA-G 54 (513)
Q Consensus 2 ~~s~dg~~las~s~D~-------------------~v~iwd~~~~~~~~~~~l~~~~-------~~v~~v~~s~~~~~-~ 54 (513)
+++|++.++..++.++ +|..+|..+++.+-.+....+. .....+....+++. .
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRK 328 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEee
Confidence 4678888888777653 5999999999988887754332 11222222224421 2
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCC-----------Ce------------------------EEEEEcCCCCE
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMG-----------PV------------------------KVMRYNPVFDT 99 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~-----------~V------------------------~~l~~sp~~~~ 99 (513)
+++.++.++.+.++|.. +++.+..+..... ++ ..++++|+..+
T Consensus 329 ~l~~~~~~G~l~~lD~~--tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRT--NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEECCTTSEEEEEETT--TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEEECCCCEEEEEECC--CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 78888999999999998 8888776542110 11 15688998888
Q ss_pred EEEEcCC-------------------------------------------CcEEEecCCCCCCCCcceeeeecCCccccc
Q 010302 100 VISADDK-------------------------------------------GIIEYWSPHTLQFPESEVSFRLKSDTNLFE 136 (513)
Q Consensus 100 l~s~s~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 136 (513)
+++...+ +.|..||+.+++. .|..+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-----~W~~~------- 474 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-----AWSVE------- 474 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-----EEEEE-------
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-----EeecC-------
Confidence 8775432 5566777766432 22221
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 137 ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 137 ~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
+...+....++.++..++.++.|+.+++||.++|+.+..+.
T Consensus 475 ---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 475 ---HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp ---ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ---CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 12233344566688888889999999999999999988775
No 276
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.13 E-value=0.0007 Score=66.57 Aligned_cols=157 Identities=8% Similarity=-0.002 Sum_probs=96.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCC-------CCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFI-------PGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~-------~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
++..+..++.++.|..||..+++.+-...+... ...+...... .+. .+..++.++.|..+|.. +++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~--tG~~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTS--DGTVA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETT--TCCEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECC--CCCEE
Confidence 456777788899999999999998777665321 1222221111 222 45556678899999997 77777
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEE
Q 010302 79 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 79 ~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 158 (513)
............... .+..++.++.++.+..+|..+++. .|..+.............+ .. ++..+..
T Consensus 127 W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~~----~~--~~~~v~~ 193 (376)
T 3q7m_A 127 WQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAV-----KWTVNLDMPSLSLRGESAP----TT--AFGAAVV 193 (376)
T ss_dssp EEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCE-----EEEEECCC-----CCCCCC----EE--ETTEEEE
T ss_pred EEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcE-----EEEEeCCCCceeecCCCCc----EE--ECCEEEE
Confidence 666543322222222 245777888899999999988653 3433322222111111111 12 2346677
Q ss_pred EeCCCcEEEEEcCCCeEEEEec
Q 010302 159 TSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 159 ~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
++.++.+..+|..+|+.+....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEE
T ss_pred EcCCCEEEEEECCCCcEEEEEe
Confidence 7889999999999999877664
No 277
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.09 E-value=0.00053 Score=65.79 Aligned_cols=184 Identities=9% Similarity=-0.017 Sum_probs=111.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG 86 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~ 86 (513)
+..|..++.++.|..+|.. ++........ ...+..+...+++. +..++.++.|..+|.. ++.+..+.....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~---g~~~~~~~~~~~ 177 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK--KAIYATPIVSEDGT---IYVGSNDNYLYAINPD---GTEKWRFKTNDA 177 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECS--SCCCSCCEECTTSC---EEEECTTSEEEEECTT---SCEEEEEECSSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--CceeeeeEEcCCCE---EEEEcCCCEEEEECCC---CCEeEEEecCCC
Confidence 3445567778889999987 6655544422 22233334444443 3445567889999874 555555555556
Q ss_pred CeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 010302 87 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIR 166 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~ 166 (513)
.+.++...+++.+.+.. +.+..+| .+++ .+.........+.++...++|...+ ++.++.|.
T Consensus 178 ~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~--------------~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~ 238 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS---DKVYAIN-PDGT--------------EKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLY 238 (330)
T ss_dssp CCSCCEECTTCCEEEES---SSEEEEC-TTSC--------------EEEEECCSSCCCSCCEECTTSCEEE-EETTTEEE
T ss_pred ceeeeEEcCCCEEEEEe---CEEEEEC-CCCc--------------EEEEEccCCcceeceEECCCCeEEE-EcCCCeEE
Confidence 67777777787765544 6788888 4422 2222222334577788888886555 56677888
Q ss_pred EEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccccceEEEE
Q 010302 167 VFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVN 246 (513)
Q Consensus 167 iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d 246 (513)
.+| .+++.+..+... ......+..+++|++.+.....+|..+|
T Consensus 239 ~~~-~~g~~~~~~~~~------------------------------------~~~~~~~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 239 AIN-PDGTEKWRFKTG------------------------------------KRIESSPVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEC-TTSCEEEEEECS------------------------------------SCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred EEC-CCCCEeEEeeCC------------------------------------CCccccceEcCCCeEEEecCCCCEEEEC
Confidence 887 456655443210 0112345667778766655555899999
Q ss_pred cccCcEEEEe
Q 010302 247 LHTNKVSRIL 256 (513)
Q Consensus 247 ~~t~~~v~~~ 256 (513)
. +|+.+..+
T Consensus 282 ~-~g~~~~~~ 290 (330)
T 3hxj_A 282 P-DGTEKWNF 290 (330)
T ss_dssp T-TSCEEEEE
T ss_pred C-CCcEEEEE
Confidence 6 77766554
No 278
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.07 E-value=3.9e-07 Score=90.34 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=76.0
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCC-cceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDV-KAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~-~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
..+|+.+++++.|+.|+.||.++++.+....... +..+ ..+|.- ....+++++.++.+..||.. +++.+..+.
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-~~~~---~~sp~~~~~~~v~~g~~dg~v~a~D~~--tG~~~w~~~ 119 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-PELV---QASPCRSSDGILYMGKKQDIWYVIDLL--TGEKQQTLS 119 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCH-HHHH---TTCSCC-----CCCCEEEEEEEEECCC-----------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC-cccc---ccCceEecCCEEEEEeCCCEEEEEECC--CCcEEEEec
Confidence 4567778888899999999999888765543210 0000 011110 11155667778899999998 788877766
Q ss_pred cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCC---CEEEEE
Q 010302 83 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG---KQFSIT 159 (513)
Q Consensus 83 ~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg---~~l~s~ 159 (513)
.+. ...++|++..+++++.|+.|..||.++++. .|..+. .. ....+++++. ..++++
T Consensus 120 ~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-----~W~~~~-------~~----~~~~~~~~~~~~~~~v~~~ 179 (369)
T 2hz6_A 120 SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-----RWNATY-------FD----YAASLPEDDVDYKMSHFVS 179 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSC-----CCEEEE-------EE----ECCBCCCCCTTCCCCEEEE
T ss_pred CCC----cccccccCCEEEEEecCCEEEEEECCCCCE-----EEeEec-------cc----ccCccccCCccccceEEEE
Confidence 543 245567888999999999999999988653 122110 00 1122333332 456678
Q ss_pred eCCCcEEEEEcCCCeEEEEec
Q 010302 160 SPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~~~~~~ 180 (513)
+.|+.|+.||.++|+.+..++
T Consensus 180 ~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 180 NGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ETSCEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEec
Confidence 899999999999999876654
No 279
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.04 E-value=0.0019 Score=63.38 Aligned_cols=189 Identities=10% Similarity=0.083 Sum_probs=107.3
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCc---EEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGA---VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH 84 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~---v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h 84 (513)
..++.++.++.|..+|..+++.+........... ....... .. .++.+..++.+..+|.. +++.+......
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~--~v~~g~~~g~l~~~d~~--tG~~~w~~~~~ 217 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FG--AAVVGGDNGRVSAVLME--QGQMIWQQRIS 217 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TT--EEEECCTTTEEEEEETT--TCCEEEEEECC
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CC--EEEEEcCCCEEEEEECC--CCcEEEEEecc
Confidence 3455566677777777777776655543211100 0000111 12 45667778899999987 77777665422
Q ss_pred CCC-------eEEEEEcC--CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 85 MGP-------VKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 85 ~~~-------V~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
... +..+.-.| .+..++.++.++.+..+|..+++. .|... ......+.. ++..
T Consensus 218 ~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~w~~~-----------~~~~~~~~~--~~~~ 279 (376)
T 3q7m_A 218 QATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----MWKRE-----------LGSVNDFIV--DGNR 279 (376)
T ss_dssp C-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----EEEEC-----------CCCEEEEEE--ETTE
T ss_pred cCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----Eeecc-----------CCCCCCceE--ECCE
Confidence 110 00011112 356777788889999999987542 22221 112333444 4667
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEE
Q 010302 156 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 235 (513)
Q Consensus 156 l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li 235 (513)
+..++.++.|..+|..+|+.+....... .......... +..|+
T Consensus 280 l~~~~~~g~l~~~d~~tG~~~w~~~~~~-----------------------------------~~~~~~~~~~--~~~l~ 322 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDGGVTLWTQSDLL-----------------------------------HRLLTSPVLY--NGNLV 322 (376)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECTTT-----------------------------------TSCCCCCEEE--TTEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEeecccC-----------------------------------CCcccCCEEE--CCEEE
Confidence 7778889999999999999866543100 0001112222 34455
Q ss_pred Ecccc-ceEEEEcccCcEEEEeC
Q 010302 236 YATLL-GIKIVNLHTNKVSRILG 257 (513)
Q Consensus 236 ~~s~~-gi~v~d~~t~~~v~~~g 257 (513)
.++.. .+.++|..+|+.+....
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEe
Confidence 55554 59999999999876653
No 280
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.04 E-value=0.00022 Score=76.44 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=104.2
Q ss_pred eEecCCCEEEEEeCCCc-------------------EEEEEccCCceeEEEEcCCCC-------CcEEEEEEcCCCc-ce
Q 010302 2 QVSVDGLLCCSISNDKS-------------------VKIYDVVNYDMMLMIRLPFIP-------GAVEWVYKQGDVK-AG 54 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~-------------------v~iwd~~~~~~~~~~~l~~~~-------~~v~~v~~s~~~~-~~ 54 (513)
+++|++.++..++.++. |..||..+++.+-.+....+. ..........++. ..
T Consensus 241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~ 320 (689)
T 1yiq_A 241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK 320 (689)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence 46788888888877753 999999999988877654332 1111111111332 12
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCC-C--------------------------------------CeEEEEEcC
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHM-G--------------------------------------PVKVMRYNP 95 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~-~--------------------------------------~V~~l~~sp 95 (513)
+++.++.++.++++|.. +++++....... . .-..++|+|
T Consensus 321 ~v~~~~~~G~l~~lD~~--tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRA--TGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEECCTTSEEEEEETT--TCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEECCCCeEEEEECC--CCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 67788899999999997 777764432110 0 011368899
Q ss_pred CCCEEEEEcCC---------------------------------------------CcEEEecCCCCCCCCcceeeeecC
Q 010302 96 VFDTVISADDK---------------------------------------------GIIEYWSPHTLQFPESEVSFRLKS 130 (513)
Q Consensus 96 ~~~~l~s~s~d---------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~ 130 (513)
+..++++...+ |.|..||+.+
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-------------- 464 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-------------- 464 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT--------------
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC--------------
Confidence 88888776443 4455555554
Q ss_pred CccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 131 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 131 ~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
++.+-....+. ....-.++..+..++.++.|+.++.||.+||+.+..++
T Consensus 465 G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 465 QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 33333333222 22223555678888899999999999999999988764
No 281
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.99 E-value=0.00064 Score=72.61 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=100.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC--CCcceEEEEeC-----CCCeEEEEecCCCCCcce
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG--DVKAGLAISDR-----NSSFVHIYDARADSNEPL 78 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~--~~~~~~l~s~~-----~d~~I~iwd~~~~~~~~i 78 (513)
++..++.++.|+.|..+|..+++.+-......... ...+..+| ... .+++..+ .++.|..+|.. +++.+
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~--tG~~~ 191 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-PYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDAD--TGKLA 191 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-SCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETT--TCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC-cceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECC--CCcEE
Confidence 35567778889999999999999887776532110 00001111 112 1333332 25889999998 88887
Q ss_pred EEeecC--C-----------------------------CCeEEEEEcCCCCEEEEEcCCCc-------------------
Q 010302 79 ISKKVH--M-----------------------------GPVKVMRYNPVFDTVISADDKGI------------------- 108 (513)
Q Consensus 79 ~~~~~h--~-----------------------------~~V~~l~~sp~~~~l~s~s~dg~------------------- 108 (513)
..+... . .....++++|+.++++.++.++.
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 776421 0 01124688888888888877663
Q ss_pred EEEecCCCCCCCCcceeeeecCCcc-ccccccCCcceEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 109 IEYWSPHTLQFPESEVSFRLKSDTN-LFEILKSKTTVSAIEVSPDGK---QFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 109 i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~spdg~---~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
|..+|..+++. .|.++.... ...+. ...++....+..+|+ .++.++.+|.++++|..+|+.+....
T Consensus 272 v~AlD~~tG~~-----~W~~~~~~~~~wd~~-~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 272 ILAIRPDTGKL-----AWHYQVTPGDSWDFT-ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEECTTTCCE-----EEEEESSTTCCSCCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCce-----eeEeecCCCcccccc-CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 77888887653 444432210 00000 112222233334775 68888899999999999999986543
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.97 E-value=0.003 Score=58.35 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=102.6
Q ss_pred CeEecCCCEEE-EEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC-cce
Q 010302 1 MQVSVDGLLCC-SISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPL 78 (513)
Q Consensus 1 v~~s~dg~~la-s~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~-~~i 78 (513)
|+|+|++..|. +...++.|...|.. ++....+.+.+. .....+.+.+++. ++++.-.++.+.++++..... ..+
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~--~~vs~E~~~~l~~~~v~~~~~i~~~ 107 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQ--FVISDERDYAIYVISLTPNSEVKIL 107 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTE--EEEEETTTTEEEEEEECTTCCEEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCE--EEEEECCCCcEEEEEcCCCCeeeee
Confidence 47888766554 46678889999997 788777766533 4577888877665 777776778899998862221 112
Q ss_pred EEee------cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 79 ISKK------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 79 ~~~~------~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.... .+....-.++|+|.++.|.++.+.....+|.... .+... .+..-..... .-..+...+.+++++|.
T Consensus 108 ~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~~~~-~l~i~~~~~~-~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 108 KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LLSSN-ELHISKDKAL-QRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES--TTCSS-CCEEEECHHH-HHTCCSSCCCEEEEETT
T ss_pred eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc--cccCC-ceeeecchhh-ccccccCCceeEEEcCC
Confidence 2221 1234468999999998887777666666664431 10000 0000000000 00112234789999996
Q ss_pred CC-EEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 153 GK-QFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 153 g~-~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
.. +++....++.+.++|.. |+.+..+
T Consensus 184 tg~lliLS~~s~~L~~~d~~-g~~~~~~ 210 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLV-GEVIGEM 210 (255)
T ss_dssp TTEEEEEETTTTEEEEECTT-CCEEEEE
T ss_pred CCeEEEEECCCCeEEEEcCC-CCEEEEE
Confidence 54 55555567888888855 5555544
No 283
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.95 E-value=0.0091 Score=56.79 Aligned_cols=201 Identities=9% Similarity=-0.029 Sum_probs=111.9
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-C-CeEEEEecCCCCCcce
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-S-SFVHIYDARADSNEPL 78 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-d-~~I~iwd~~~~~~~~i 78 (513)
++|+++|+++++-...+.|..||... +....... ......+.+.++++ ++++... + ..|..+|.. +++..
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~--~g~~~ 108 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKS--DGTVE 108 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEECTTSC--EEEEEECTTSCEEEEEECT--TSCEE
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEcCCCc--EEEEeccCCcceEEEEcCC--CCeEE
Confidence 47889999887776789999999865 33333332 35688899999887 5555433 2 246666765 44433
Q ss_pred EEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc--ccccCCcceEEEEEcCCCCE
Q 010302 79 ISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF--EILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 79 ~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~spdg~~ 155 (513)
.... ........++..+++..+++-..++.|..+|....+. ..+.. ... +. .....-...+.+ +||++.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~----~v~~~-~~~-~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG----SIWLE-HPM-LARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE----EEEEE-CGG-GSCSSTTCCSCSEEEE--EEETTE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE----eEEEE-CCc-cccccccCCCCcCCCc--CcCCCE
Confidence 2222 1222334555555555556555678888888754210 00000 000 00 011111235566 888876
Q ss_pred EEEE-eCCCcEEEEEcCC-CeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCE
Q 010302 156 FSIT-SPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 233 (513)
Q Consensus 156 l~s~-s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~ 233 (513)
|..+ +..+.|..|++.. ++.- . ++... + ...+..+++|++|++
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~----~------------------------~~~~~--~-----~~~P~gi~vd~dG~l 225 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPG----E------------------------PEIFV--E-----QTNIDDFAFDVEGNL 225 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBC----C------------------------CEEEE--E-----SCCCSSEEEBTTCCE
T ss_pred EEEEeCCCCEEEEEEeCCCCCCC----c------------------------cEEEe--c-----cCCCCCeEECCCCCE
Confidence 6544 4578899998764 3210 0 00000 0 023568899999987
Q ss_pred EEEccc-cceEEEEcccCcEE
Q 010302 234 LIYATL-LGIKIVNLHTNKVS 253 (513)
Q Consensus 234 li~~s~-~gi~v~d~~t~~~v 253 (513)
++.... ..|.++|.. |+..
T Consensus 226 ~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 226 YGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEECBTTCCEEEECTT-CCEE
T ss_pred EEEeCCCCeEEEECCC-CCEE
Confidence 665543 357788764 5543
No 284
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.93 E-value=0.0018 Score=60.23 Aligned_cols=211 Identities=10% Similarity=-0.060 Sum_probs=122.4
Q ss_pred cEEEEEEcCCCcceEEEEeC--CCCeEEEEecCCCCCcceEEeecCC-CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCC
Q 010302 41 AVEWVYKQGDVKAGLAISDR--NSSFVHIYDARADSNEPLISKKVHM-GPVKVMRYNPVFDTVISADDKGIIEYWSPHTL 117 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~~--~d~~I~iwd~~~~~~~~i~~~~~h~-~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 117 (513)
....+.+++++. +.++.+ .++.|.+.|+. +++.+..+.... .....+++. .+.+.++.-.++.+.++|..++
T Consensus 22 f~~Gl~~~~dg~--Lyvstg~~~~s~v~~iD~~--tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAENDT--LFESTGLYGRSSVRQVALQ--TGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECSTTE--EEEEECSTTTCEEEEEETT--TCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCCCe--EEEECCCCCCCEEEEEECC--CCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCC
Confidence 357888988753 555543 36899999998 888888876222 222345554 2234456667889999999874
Q ss_pred CCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCcc
Q 010302 118 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 197 (513)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 197 (513)
+. +.++...... ...+++||+.+.++..++.|.++|..+.+.+..+.-..
T Consensus 97 ~v--------------~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-------------- 146 (266)
T 2iwa_A 97 SN--------------IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-------------- 146 (266)
T ss_dssp EE--------------EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE--------------
T ss_pred cE--------------EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC--------------
Confidence 42 3333211011 13355688877766678999999999988877664100
Q ss_pred ccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc-cccceEEEEcccCcEEEEeCCCCccchhheeccccCCcC
Q 010302 198 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA-TLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRS 276 (513)
Q Consensus 198 ~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~-s~~gi~v~d~~t~~~v~~~g~~~~~~r~~~~~~~~~~~~ 276 (513)
.++.+ ..+..+.|. +|+..+.. ....|.++|..+++++..+.-.. .+--. .-...+.
T Consensus 147 ------~~~p~-----------~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--~~~~~--~~~~~~~ 204 (266)
T 2iwa_A 147 ------NGHRV-----------IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPN--LRKKL--IDEGFRD 204 (266)
T ss_dssp ------TTEEC-----------CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHH--HHHHH--HHTTCTT
T ss_pred ------CCccc-----------ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCC--ccccc--ccccccc
Confidence 00000 012234566 56433332 23469999999999999884211 00000 0000111
Q ss_pred CcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 010302 277 SKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 318 (513)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~ 318 (513)
......+++. +....+|+++....++|...-.
T Consensus 205 ~~v~nGIa~~----------~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 205 IDVLNGIAWD----------QENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp CCCEEEEEEE----------TTTTEEEEEETTCSEEEEEEEE
T ss_pred cCceEEEEEc----------CCCCEEEEECCCCCeEEEEEEe
Confidence 1112222222 3456899999999999988644
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.0052 Score=61.83 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=88.5
Q ss_pred CeEecC---CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC---Ce-EEEEecCCC
Q 010302 1 MQVSVD---GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS---SF-VHIYDARAD 73 (513)
Q Consensus 1 v~~s~d---g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d---~~-I~iwd~~~~ 73 (513)
|+|+|+ |.+++ +...+.|+.+|..++....... .......+++++++. ++++.... .. +...+.. .
T Consensus 144 vavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~~~-~ 216 (433)
T 4hw6_A 144 MMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFTRA-S 216 (433)
T ss_dssp EEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEEECC---CCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEECGG-G
T ss_pred EEEccccCCCEEEE-EeCCCCEEEEECCCCEEEEeec---CCCCccEEEECCCCC--EEEEcCCCCcccceEEEEECC-C
Confidence 467774 55444 4433899999998776544322 335688999999988 56655422 22 3333332 1
Q ss_pred CCcceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 74 SNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 74 ~~~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.......+. .......++++| ++.++++-..++.|+.+|..++... ..+... ........++|+|+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~-~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMM-DTKGSNFHIVWHPT 283 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEEC-SCCSSCEEEEECTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEecc-CCCCCcccEEEeCC
Confidence 111112222 223446788999 7777667667788999988653210 001111 11223457999999
Q ss_pred CCEEE-EEeCCCcEEEEEcC
Q 010302 153 GKQFS-ITSPDRRIRVFWFR 171 (513)
Q Consensus 153 g~~l~-s~s~D~~I~iwd~~ 171 (513)
|++|. +-...+.|+.+++.
T Consensus 284 G~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEEeCCCCEEEEEeCC
Confidence 99554 44457889998765
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.0066 Score=61.01 Aligned_cols=152 Identities=10% Similarity=0.041 Sum_probs=91.3
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCC----eEEEEecCCCCC
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSS----FVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~----~I~iwd~~~~~~ 75 (513)
|+++| ++..|..+...+.|+.+|..++....... .......++++++++. ++++...++ .+.+.+.. +..
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeCC-Cce
Confidence 46787 34445555444789999998765544332 3456888999998874 444443222 34444432 122
Q ss_pred cceEEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 76 EPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
.....+.. ......++++| ++.++++-..++.|..++...... ..+... ........++|+|+|+
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------------~~~~~~-~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------------TPLFTI-QDSGWEFHIQFHPSGN 282 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------------EEEEEC-SSSSCCEEEEECTTSS
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------------EEEEEc-CCCCcceeEEEcCCCC
Confidence 21233332 23456788999 777777777778899898865221 011111 1224578999999999
Q ss_pred EEE-EEeCCCcEEEEEcC
Q 010302 155 QFS-ITSPDRRIRVFWFR 171 (513)
Q Consensus 155 ~l~-s~s~D~~I~iwd~~ 171 (513)
+|. +-...+.|..++..
T Consensus 283 ~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCEEEEEeCC
Confidence 554 44467889998765
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.84 E-value=0.021 Score=54.58 Aligned_cols=179 Identities=10% Similarity=0.003 Sum_probs=105.2
Q ss_pred CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--CcceEEeecCCCCeEEEEE
Q 010302 16 DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRY 93 (513)
Q Consensus 16 D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~--~~~i~~~~~h~~~V~~l~~ 93 (513)
...|+..|+.+.+....+. .......+.|.+.... +.++...++.|..+++.... ......+.........+++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 84 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 84 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred CCeEEEEECCCcceEehhc---CCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence 4579999998876654432 2345778888875443 67777778899999986200 1222223222234578999
Q ss_pred cCCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeC-C-CcEEEEE
Q 010302 94 NPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP-D-RRIRVFW 169 (513)
Q Consensus 94 sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~-D-~~I~iwd 169 (513)
++.+. ++++-...+.|.+.++.... ...+. ..-..+..++++|.+..|..+.. . +.|..++
T Consensus 85 d~~~~~ly~~d~~~~~I~~~~~~g~~---------------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 85 DWIHSNIYWTDSVLGTVSVADTKGVK---------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSS---------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred eecCCeEEEEECCCCEEEEEeCCCCc---------------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 87554 44555677889988875311 11111 12346789999997665554443 2 5676666
Q ss_pred cCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc--ceEEEEc
Q 010302 170 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNL 247 (513)
Q Consensus 170 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~--gi~v~d~ 247 (513)
+. |+....+-. .....+..+++|++++.|.++... .|.++|+
T Consensus 150 ~d-G~~~~~~~~-----------------------------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~ 193 (316)
T 1ijq_A 150 LN-GVDIYSLVT-----------------------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (316)
T ss_dssp TT-SCCEEEEEC-----------------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CC-CCCeEEEEE-----------------------------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence 53 322222210 011234578999887776665433 4888887
Q ss_pred cc
Q 010302 248 HT 249 (513)
Q Consensus 248 ~t 249 (513)
..
T Consensus 194 dg 195 (316)
T 1ijq_A 194 NG 195 (316)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 288
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.79 E-value=0.0011 Score=63.62 Aligned_cols=142 Identities=7% Similarity=-0.006 Sum_probs=89.9
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccc
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
.+..++.++.+..+|.. ++.......+...+.++...+++. +..++.++.+..+|.. ++. +
T Consensus 109 ~l~v~t~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~--------------~ 169 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD---GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE--------------K 169 (330)
T ss_dssp EEEEECTTSEEEEECTT---SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE--------------E
T ss_pred EEEEEecCCEEEEEcCC---CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE--------------e
Confidence 45556677889999874 445555555555566777777776 4556777889999886 331 1
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeec
Q 010302 135 FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEI 214 (513)
Q Consensus 135 ~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~ 214 (513)
..+......+.++.+.+++..++. + +.|..|| .+++.+..+...
T Consensus 170 ~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~-------------------------------- 213 (330)
T 3hxj_A 170 WRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAG-------------------------------- 213 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCS--------------------------------
T ss_pred EEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccC--------------------------------
Confidence 112222334566777778886654 3 8899999 777766544310
Q ss_pred cccCCCCCCceEEcCCCCEEEEccccceEEEEcccCcEEEEe
Q 010302 215 EKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRIL 256 (513)
Q Consensus 215 ~~~~~~~~~~i~fd~~g~~li~~s~~gi~v~d~~t~~~v~~~ 256 (513)
......++.+++|++.+.....++..+|. +++.+..+
T Consensus 214 ----~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 214 ----YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp ----SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEE
T ss_pred ----CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEe
Confidence 01245677888888777665678888875 55555444
No 289
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.79 E-value=0.005 Score=64.56 Aligned_cols=160 Identities=12% Similarity=0.069 Sum_probs=94.9
Q ss_pred EEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC---CCcceEEEEeC-----CCCeEEEEecCCCCCcceEEe
Q 010302 10 CCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG---DVKAGLAISDR-----NSSFVHIYDARADSNEPLISK 81 (513)
Q Consensus 10 las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~---~~~~~~l~s~~-----~d~~I~iwd~~~~~~~~i~~~ 81 (513)
++.++.|+.|..+|..+++.+-...+..+... ..+..+| ++. +++.++ .++.|..+|.+ +++.+-.+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~-~~~~ssP~v~~g~--V~vg~~g~e~g~~g~v~A~D~~--TG~~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVG-STLTIAPYVVKDK--VIIGSSGAELGVRGYLTAYDVK--TGEQVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETTE--EEECCBCGGGTCCCEEEEEETT--TCCEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCcc-ceeecCCEEECCE--EEEEecccccCCCCeEEEEECC--CCcEEEEE
Confidence 77788899999999999998877665432100 0000111 222 443332 37899999998 78887766
Q ss_pred ecCCCC-------------------------------------e-EEEEEcCCCCEEEEEcCCC----------------
Q 010302 82 KVHMGP-------------------------------------V-KVMRYNPVFDTVISADDKG---------------- 107 (513)
Q Consensus 82 ~~h~~~-------------------------------------V-~~l~~sp~~~~l~s~s~dg---------------- 107 (513)
...... + ..+++.+...+++.+..++
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence 522110 0 1356667777777776553
Q ss_pred cEEEecCCCCCCCCcceeeeecCCcc-ccccccCCcceEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 108 IIEYWSPHTLQFPESEVSFRLKSDTN-LFEILKSKTTVSAIEVS-PDG---KQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 108 ~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~s-pdg---~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
.|..+|.++++. .|.++.... ...+.....++. +... .+| +.++.++.+|.+.++|.++|+.+....
T Consensus 279 sv~Ald~~TG~~-----~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 279 TIFGRDADTGEA-----KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEETTTCCE-----EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCCce-----eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 677777777553 333322110 001111112222 2332 577 467778899999999999999987654
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.78 E-value=0.0011 Score=70.82 Aligned_cols=113 Identities=12% Similarity=-0.017 Sum_probs=69.9
Q ss_pred eEec-CCCEEEEEeCCC-----------cEEEEEccCCceeEEEEcC-CCCCcEEEEEEcCCCcceEEEEeC-CCCeEEE
Q 010302 2 QVSV-DGLLCCSISNDK-----------SVKIYDVVNYDMMLMIRLP-FIPGAVEWVYKQGDVKAGLAISDR-NSSFVHI 67 (513)
Q Consensus 2 ~~s~-dg~~las~s~D~-----------~v~iwd~~~~~~~~~~~l~-~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~i 67 (513)
++.+ +|++++.|+.+. .+.+||..+++......+. .+...+..+.+..++. +++.|+ .+..+.+
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKKTSL 269 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTCEEE
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC--EEEeCCCCCCceEE
Confidence 4566 889999988643 5889999887644332221 1233454566666666 666666 5668999
Q ss_pred EecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEc-CC-----CcEEEecCCCC
Q 010302 68 YDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD-DK-----GIIEYWSPHTL 117 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~d-----g~i~iwd~~~~ 117 (513)
||........+..+...+.. .+++..+++++++.|+ .+ ..+.+||+.+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 99873222222222222222 3455667999999988 34 46889998764
No 291
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.78 E-value=0.0032 Score=65.82 Aligned_cols=164 Identities=9% Similarity=-0.011 Sum_probs=96.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC--CCcceEEEEeCC-----CCeEEEEecCCCCCcceE
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG--DVKAGLAISDRN-----SSFVHIYDARADSNEPLI 79 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~--~~~~~~l~s~~~-----d~~I~iwd~~~~~~~~i~ 79 (513)
+..+..++.|+.+..+|..+++.+-...+..+... ..+..+| ... .+++.... ++.|..+|.. +++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~-~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~--tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG-STLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLK--TGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETT--TCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc-ceeccCCEEECC-EEEEEecCCccCCCCEEEEEECC--CCcEEE
Confidence 55677788899999999999998877765432110 0011111 112 24444332 7899999998 788777
Q ss_pred EeecCCCC--------------------------------------eEEEEEcCCCCEEEEEcCC---------------
Q 010302 80 SKKVHMGP--------------------------------------VKVMRYNPVFDTVISADDK--------------- 106 (513)
Q Consensus 80 ~~~~h~~~--------------------------------------V~~l~~sp~~~~l~s~s~d--------------- 106 (513)
++...... ...+++.++...+..++.+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 66522110 0235667766666665532
Q ss_pred -CcEEEecCCCCCCCCcceeeeecCCcc-ccccccCCcceEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 107 -GIIEYWSPHTLQFPESEVSFRLKSDTN-LFEILKSKTTVSAIEVSPDGK---QFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 107 -g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~spdg~---~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
+.|..+|.++++. .|.++.... ...+.....++. +...++|+ .++.++.+|.+.++|..+|+.+..+.
T Consensus 271 ~~~v~Ald~~tG~~-----~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 271 TMTIWGRDLDTGMA-----KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp TTEEEEEETTTCCE-----EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEEecCCCcE-----EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 2477778877553 344332110 000111122222 23335784 56778889999999999999987654
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.71 E-value=0.033 Score=55.24 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=109.2
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--CcceEEeecCCC
Q 010302 9 LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMG 86 (513)
Q Consensus 9 ~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~--~~~i~~~~~h~~ 86 (513)
+|+.+ ....|+..++.......... ....+..+.|.+.... +.++....+.|..+++.... ......+.....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~---~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC---SCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEe-ccceeEEEccCCcceeEecc---ccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 34433 34678888887665544332 3456788888875443 67777778899999885211 122333333445
Q ss_pred CeEEEEEcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeC--C
Q 010302 87 PVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP--D 162 (513)
Q Consensus 87 ~V~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~--D 162 (513)
....+++.+. ++++++-...+.|.+.++.... ...+. ..-..+..+++.|.+.+|..... .
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~ 224 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP 224 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS---------------EEEEEECSSCCEEEEEEETTTTEEEEEECSSS
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCc---------------eEEEEeCCCCCcceEEEecccCeEEEEeCCCC
Confidence 6789999984 5555666677889888875421 11221 23345789999997666654442 3
Q ss_pred CcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc--c
Q 010302 163 RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--L 240 (513)
Q Consensus 163 ~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~--~ 240 (513)
+.|...++.......... .....+..+++|+++..|.++.. .
T Consensus 225 ~~I~~~~~dG~~~~~~~~------------------------------------~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 225 AKIKKGGLNGVDIYSLVT------------------------------------ENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp CCEEEEETTSCSCEEEEC------------------------------------SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CEEEEEeCCCCccEEEEE------------------------------------CCCCceEEEEEEeCCCEEEEEECCCC
Confidence 567766654322111111 01124467899988877766543 3
Q ss_pred ceEEEEcccC
Q 010302 241 GIKIVNLHTN 250 (513)
Q Consensus 241 gi~v~d~~t~ 250 (513)
.|..+|+...
T Consensus 269 ~I~~~d~dG~ 278 (400)
T 3p5b_L 269 SISSIDVNGG 278 (400)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEeCCCC
Confidence 4788887543
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.56 E-value=0.066 Score=55.92 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=95.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCC-----cEEEEEEc-CCCcceEEEEeC-----CCCeEEEEecCCCCC
Q 010302 7 GLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPG-----AVEWVYKQ-GDVKAGLAISDR-----NSSFVHIYDARADSN 75 (513)
Q Consensus 7 g~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~-----~v~~v~~s-~~~~~~~l~s~~-----~d~~I~iwd~~~~~~ 75 (513)
+..+..++.|+.|..+|..+++.+-...+..+.. ....+.-. .+++..+++..+ .++.|.-+|.. ++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~--tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD--TG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT--TC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC--CC
Confidence 4567778889999999999999887776543210 00111111 112212333221 37889999987 77
Q ss_pred cceEEeecCCCC-----------------------------------------eEEEEEcCCCCEEEEEcC---------
Q 010302 76 EPLISKKVHMGP-----------------------------------------VKVMRYNPVFDTVISADD--------- 105 (513)
Q Consensus 76 ~~i~~~~~h~~~-----------------------------------------V~~l~~sp~~~~l~s~s~--------- 105 (513)
+.+-........ -..++++|...+++.+..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 766654321100 013566677677765553
Q ss_pred -----------C----CcEEEecCCCCCCCCcceeeeecCCc-cccccccCCcceEEEEEc-CCCC---EEEEEeCCCcE
Q 010302 106 -----------K----GIIEYWSPHTLQFPESEVSFRLKSDT-NLFEILKSKTTVSAIEVS-PDGK---QFSITSPDRRI 165 (513)
Q Consensus 106 -----------d----g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~s-pdg~---~l~s~s~D~~I 165 (513)
| +.|..+|+.+++. .|.++... ....+.....++. +... .+|+ .++.++.+|.+
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~-----~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l 348 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEV-----KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFF 348 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCE-----EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEE
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCE-----EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceE
Confidence 2 4677888877653 44433211 0001111112222 2222 5774 67788999999
Q ss_pred EEEEcCCCeEEEEecc
Q 010302 166 RVFWFRTGKLRRVYDE 181 (513)
Q Consensus 166 ~iwd~~tg~~~~~~~~ 181 (513)
+++|.++|+.+..+..
T Consensus 349 ~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 349 YVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEETTTCCEEEEEES
T ss_pred EEEECCCCCEeccccc
Confidence 9999999999877653
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.55 E-value=0.051 Score=50.03 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=81.2
Q ss_pred EcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee-cCCCCeEEEEEcCCCCEEEEEcCCCcEEEe
Q 010302 34 RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYW 112 (513)
Q Consensus 34 ~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw 112 (513)
.+++-...+..+++.+++..+++++. .++.|...|. +++.++.+. ......-.|++.+++.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d-~~~~I~~ld~---~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTIN-KPAAIVEMTT---NGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEE-TTEEEEEEET---TCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEEC-CCCeEEEEeC---CCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 35555567999999998765454554 4788888888 467777764 223567889999888877776677788888
Q ss_pred cCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 113 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 113 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
++........ .-.. ...+. ....+...-.++|+|+++.|.++.......+|.+.
T Consensus 97 ~v~~~~~i~~--~~~~--~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 97 SLTPNSEVKI--LKKI--KIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EECTTCCEEE--EEEE--ECCCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred EcCCCCeeee--eeee--ccccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 7654321000 0000 00000 01234457899999999877777765555566553
No 295
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.51 E-value=0.052 Score=53.52 Aligned_cols=136 Identities=11% Similarity=-0.038 Sum_probs=82.1
Q ss_pred CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEc
Q 010302 15 NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN 94 (513)
Q Consensus 15 ~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~s 94 (513)
....|+.+++.......... .......+.|.+.... ++++....+.|..+++. .......+.........+++.
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~---~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~--g~~~~~~~~~~~~~p~glavd 167 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRREL-VFWSDVTLDRILRANLN--GSNVEEVVSTGLESPGGLAVD 167 (386)
T ss_dssp CBSCEEEECTTSCCCEEEEC---SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT--SCCEEEEECSSCSCCCCEEEE
T ss_pred cCccceeeccCCCcEEEEec---CCCccEEEEEecCCCe-EEEEeCCCCcEEEEecC--CCCcEEEEeCCCCCccEEEEE
Confidence 44678888887655433332 2345778888865443 67777788899999985 332222232233345678998
Q ss_pred CCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcCCCCEEEEEe-CC-CcEEEEEc
Q 010302 95 PVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPDGKQFSITS-PD-RRIRVFWF 170 (513)
Q Consensus 95 p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~s~s-~D-~~I~iwd~ 170 (513)
+.+. ++++-...+.|.+.++.... ...+ ...-..+..++++|.+..|.... .. +.|..+++
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~~---------------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGAH---------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSCS---------------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCCc---------------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 8554 44555667788888774311 1111 12234688999999777665444 33 56666665
Q ss_pred C
Q 010302 171 R 171 (513)
Q Consensus 171 ~ 171 (513)
.
T Consensus 233 d 233 (386)
T 3v65_B 233 D 233 (386)
T ss_dssp T
T ss_pred C
Confidence 4
No 296
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.46 E-value=0.0076 Score=55.52 Aligned_cols=143 Identities=12% Similarity=0.040 Sum_probs=91.8
Q ss_pred ecCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 4 SVDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 4 s~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
.++|+.|.... .++.+.+||..+++.+..+......- .++ +++.. +++|. .++.|.++|.. +.+.+.++.
T Consensus 93 t~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~---glt--~dg~~-L~~Sd-Gs~~i~~iDp~--T~~v~~~I~ 163 (262)
T 3nol_A 93 SDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW---GLT--HNDQY-LIMSD-GTPVLRFLDPE--SLTPVRTIT 163 (262)
T ss_dssp EEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC---CEE--ECSSC-EEECC-SSSEEEEECTT--TCSEEEEEE
T ss_pred EEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce---EEe--cCCCE-EEEEC-CCCeEEEEcCC--CCeEEEEEE
Confidence 44565555554 58899999999999999888654322 222 34542 44444 46789999997 788888876
Q ss_pred cC--C---CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc---ccCCcceEEEEEcCCCC
Q 010302 83 VH--M---GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI---LKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 83 ~h--~---~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~spdg~ 154 (513)
.. . ..+..+.|. +|...+....++.|.+.|+++++.... .+. ....... .......+.|||+|+++
T Consensus 164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~---Id~--~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI---IDL--NGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE---EEC--TTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE---EEC--CcCccccccccCcCCceEEEEEcCCCC
Confidence 32 1 334567776 777777777788999999988764211 111 1110000 01124578999999988
Q ss_pred EEEEEeC
Q 010302 155 QFSITSP 161 (513)
Q Consensus 155 ~l~s~s~ 161 (513)
.|...+.
T Consensus 238 ~lfVTGK 244 (262)
T 3nol_A 238 RLFVTGK 244 (262)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 7777664
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.43 E-value=0.03 Score=54.30 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=87.6
Q ss_pred eEecCCCEEEEEe------------CCCcEEEEEccC--CceeEEEEcCC-----CCCcEEEEEEcC--CCcceEEEEeC
Q 010302 2 QVSVDGLLCCSIS------------NDKSVKIYDVVN--YDMMLMIRLPF-----IPGAVEWVYKQG--DVKAGLAISDR 60 (513)
Q Consensus 2 ~~s~dg~~las~s------------~D~~v~iwd~~~--~~~~~~~~l~~-----~~~~v~~v~~s~--~~~~~~l~s~~ 60 (513)
.+.|+|..+++++ .+|.|.++|..+ .+. ..+.+.. .......+.... ++...+++...
T Consensus 56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh 134 (355)
T 3sre_A 56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 134 (355)
T ss_dssp EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence 4667887776662 689999999874 332 2333322 123455555544 34323444433
Q ss_pred C--CCeEEEEecCCCCCc--ceEEeecC-CCCeEEEEEcCCCCEEEEEcC---C--------------CcEEEecCCCCC
Q 010302 61 N--SSFVHIYDARADSNE--PLISKKVH-MGPVKVMRYNPVFDTVISADD---K--------------GIIEYWSPHTLQ 118 (513)
Q Consensus 61 ~--d~~I~iwd~~~~~~~--~i~~~~~h-~~~V~~l~~sp~~~~l~s~s~---d--------------g~i~iwd~~~~~ 118 (513)
. +.+|.+|++...... .+..+.+. -.....+.+.++|...++... | +.+..+|.
T Consensus 135 ~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~---- 210 (355)
T 3sre_A 135 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP---- 210 (355)
T ss_dssp STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT----
T ss_pred CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC----
Confidence 3 678889887632222 22233322 234688999999987777551 1 22333332
Q ss_pred CCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 010302 119 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFR 171 (513)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s-~D~~I~iwd~~ 171 (513)
+ .+..+...-...+.++||||++.|..+. ..+.|..|++.
T Consensus 211 ------------~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 211 ------------N-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp ------------T-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ------------C-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 1 1222222224578999999998776655 57889999986
No 298
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.42 E-value=0.048 Score=52.06 Aligned_cols=152 Identities=7% Similarity=-0.041 Sum_probs=88.5
Q ss_pred CeEecCCCEEEEE-eCCCcEEEEEccCC---ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 1 MQVSVDGLLCCSI-SNDKSVKIYDVVNY---DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 1 v~~s~dg~~las~-s~D~~v~iwd~~~~---~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
++|+++++.|..+ ...+.|..++..+. .....+ +...-.....+++.+.+.. +.++....+.|.+.++. +.
T Consensus 35 ~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~---g~ 109 (316)
T 1ijq_A 35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK---GV 109 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT---SS
T ss_pred EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-EeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCC---CC
Confidence 3677765555444 45688999988751 111221 1112233456677654432 66777778899999985 33
Q ss_pred ceEEe-ecCCCCeEEEEEcCCCCEEEEEcC-C-CcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCC
Q 010302 77 PLISK-KVHMGPVKVMRYNPVFDTVISADD-K-GIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPD 152 (513)
Q Consensus 77 ~i~~~-~~h~~~V~~l~~sp~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spd 152 (513)
....+ .........++++|.+..|..+.. . +.|...++.. .....+. ..-.....++++|+
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG---------------~~~~~~~~~~~~~P~gla~d~~ 174 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---------------VDIYSLVTENIQWPNGITLDLL 174 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---------------CCEEEEECSSCSCEEEEEEETT
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC---------------CCeEEEEECCCCCceEEEEecc
Confidence 33333 233456789999996665544443 2 5677766532 1122221 12346889999998
Q ss_pred CCEEEEEe-CCCcEEEEEcCC
Q 010302 153 GKQFSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 153 g~~l~s~s-~D~~I~iwd~~t 172 (513)
+..|..+. ..+.|..+|+..
T Consensus 175 ~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 175 SGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTS
T ss_pred CCEEEEEECCCCeEEEEecCC
Confidence 77665544 567888888763
No 299
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.42 E-value=0.032 Score=54.21 Aligned_cols=151 Identities=8% Similarity=-0.064 Sum_probs=89.3
Q ss_pred CeEecCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|++.++.|..+ ...+.|..++........... ........+++.+.+.. +.++....+.|.+.++. +....
T Consensus 78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~d---G~~~~ 151 (349)
T 3v64_C 78 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLD---GAHRK 151 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT---SCSCE
T ss_pred EEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCC---CCceE
Confidence 3567655544444 356778888877654333322 11223456666654432 66777777899999985 33333
Q ss_pred Ee-ecCCCCeEEEEEcCCCCEE-EEEcCC-CcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCE
Q 010302 80 SK-KVHMGPVKVMRYNPVFDTV-ISADDK-GIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 80 ~~-~~h~~~V~~l~~sp~~~~l-~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 155 (513)
.+ .........++++|.+..| ++-... +.|...++.. .....+. ..-...+.++++|++..
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG---------------~~~~~~~~~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---------------SGRRIIADTHLFWPNGLTIDYAGRR 216 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---------------CSCEESCCSSCSCEEEEEEETTTTE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---------------CCcEEEEECCCCCcceEEEeCCCCE
Confidence 33 2334567899999966555 444444 6677776643 1112221 22346899999987776
Q ss_pred EEEEe-CCCcEEEEEcCC
Q 010302 156 FSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 156 l~s~s-~D~~I~iwd~~t 172 (513)
|..+. ..+.|..+|+..
T Consensus 217 lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEETTTTEEEEEETTS
T ss_pred EEEEECCCCEEEEEeCCC
Confidence 65544 567788888753
No 300
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.38 E-value=0.11 Score=50.22 Aligned_cols=136 Identities=11% Similarity=-0.038 Sum_probs=80.9
Q ss_pred CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEc
Q 010302 15 NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN 94 (513)
Q Consensus 15 ~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~s 94 (513)
....|+..++.......... .......+.|.+.... +.++....+.|..+++. .......+.........+++.
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~---~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~--g~~~~~~~~~~~~~p~glavd 124 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRREL-VFWSDVTLDRILRANLN--GSNVEEVVSTGLESPGGLAVD 124 (349)
T ss_dssp CBSCEEEECTTSCCEEEEEC---SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT--SCSCEEEECSSCSCCCEEEEE
T ss_pred cccceEEEeCCCCeeEEeec---CCCceEEEEEeccccE-EEEEeccCCceEEEecC--CCCceEEEeCCCCCccEEEEe
Confidence 34567777776544433322 2345778888865443 67777778899999985 333222233233445789999
Q ss_pred CCCC-EEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc-ccCCcceEEEEEcCCCCEEEEEe-CC-CcEEEEEc
Q 010302 95 PVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPDGKQFSITS-PD-RRIRVFWF 170 (513)
Q Consensus 95 p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~s~s-~D-~~I~iwd~ 170 (513)
+.+. ++++-...+.|.+.++.... ...+ ...-..+..++++|.+..|.... .. +.|..+++
T Consensus 125 ~~~g~ly~~d~~~~~I~~~~~dG~~---------------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 125 WVHDKLYWTDSGTSRIEVANLDGAH---------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS---------------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cCCCeEEEEcCCCCeEEEEcCCCCc---------------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 8554 44566667788888775411 1111 12234578999999766555443 33 56666665
Q ss_pred C
Q 010302 171 R 171 (513)
Q Consensus 171 ~ 171 (513)
.
T Consensus 190 d 190 (349)
T 3v64_C 190 D 190 (349)
T ss_dssp T
T ss_pred C
Confidence 4
No 301
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.35 E-value=0.059 Score=53.39 Aligned_cols=151 Identities=8% Similarity=-0.022 Sum_probs=89.4
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccCCc----eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVNYD----MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~~~----~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
|+|++.+..|..+. ..+.|+.+++.... ....+ .........++..+.+.. +.++....+.|.+.++. +
T Consensus 117 l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~--~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~---g 190 (400)
T 3p5b_L 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK---G 190 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE--CSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTT---T
T ss_pred EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE--eCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCC---C
Confidence 46776555554443 46778878775421 11221 223345667777764332 67777778899999985 3
Q ss_pred cceEEe-ecCCCCeEEEEEcCCCCEEEEEc-C-CCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcC
Q 010302 76 EPLISK-KVHMGPVKVMRYNPVFDTVISAD-D-KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSP 151 (513)
Q Consensus 76 ~~i~~~-~~h~~~V~~l~~sp~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp 151 (513)
.....+ .........|+++|.+..|..+. . .+.|...++.. .....+. ..-..+..|+++|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG---------------~~~~~~~~~~l~~P~glavd~ 255 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---------------VDIYSLVTENIQWPNGITLDL 255 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS---------------CSCEEEECSSCSCEEEEEEET
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC---------------CccEEEEECCCCceEEEEEEe
Confidence 333333 33444578999999766665444 2 36677776643 1122221 2235789999999
Q ss_pred CCCEEEEEe-CCCcEEEEEcCC
Q 010302 152 DGKQFSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 152 dg~~l~s~s-~D~~I~iwd~~t 172 (513)
++..|..+. ..+.|..+|+..
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 256 LSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp TTTEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCEEEEEeCCC
Confidence 887776554 567888888754
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.12 Score=52.30 Aligned_cols=167 Identities=10% Similarity=-0.015 Sum_probs=93.0
Q ss_pred CeEecC--CCEEEEEeCCCcEEEEEccCCceeEEEEcCC-CCCcEEEEEE-------cCCCcceEEEEeCCC------Ce
Q 010302 1 MQVSVD--GLLCCSISNDKSVKIYDVVNYDMMLMIRLPF-IPGAVEWVYK-------QGDVKAGLAISDRNS------SF 64 (513)
Q Consensus 1 v~~s~d--g~~las~s~D~~v~iwd~~~~~~~~~~~l~~-~~~~v~~v~~-------s~~~~~~~l~s~~~d------~~ 64 (513)
|+|+|. ++++++....+.|++.|..++.......... .......++| ++++.. ++++...+ ..
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~-lyvad~~~~~~~~~~~ 222 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY-MIVAIDYDGKGDESPS 222 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE-EEEEECCCTTGGGEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCE-EEEEeCCCCCcccCce
Confidence 478873 4555544445779999998877665544221 2235889999 888874 44444443 23
Q ss_pred EEEEecCCCCCcce-----EEeecCCCCeEEEEEcC-CCCEEEEEcCCCcEEEecCC-------CCCCCCcceeeeecCC
Q 010302 65 VHIYDARADSNEPL-----ISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPH-------TLQFPESEVSFRLKSD 131 (513)
Q Consensus 65 I~iwd~~~~~~~~i-----~~~~~h~~~V~~l~~sp-~~~~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~~~~~ 131 (513)
|.+.+.. .++... ..+.... ....++.+| ++.++++-..++.|..+|+. ++..............
T Consensus 223 V~~i~r~-~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 223 VYIIKRN-ADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEECC-TTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred EEEEecC-CCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 5666533 112221 2232222 335778899 56666777788889999986 4332000000000000
Q ss_pred ccccccccCCcceEEEEEcCCCCEE-EEEeCCCcEEEEEcC
Q 010302 132 TNLFEILKSKTTVSAIEVSPDGKQF-SITSPDRRIRVFWFR 171 (513)
Q Consensus 132 ~~~~~~~~~~~~v~~v~~spdg~~l-~s~s~D~~I~iwd~~ 171 (513)
+.+... ....+...++|+|+|+.| ++-+..+.|+.++..
T Consensus 301 ~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 301 KQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 011111 123467899999999954 444567888886653
No 303
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.32 E-value=0.003 Score=67.45 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=100.7
Q ss_pred eEecCCCEEEEEeCCC-------------------cEEEEEccCCceeEEEEcCCCC-------CcEEEEEEcCCCcc-e
Q 010302 2 QVSVDGLLCCSISNDK-------------------SVKIYDVVNYDMMLMIRLPFIP-------GAVEWVYKQGDVKA-G 54 (513)
Q Consensus 2 ~~s~dg~~las~s~D~-------------------~v~iwd~~~~~~~~~~~l~~~~-------~~v~~v~~s~~~~~-~ 54 (513)
+++|++.++..++.++ +|..+|..+++.+-......|. ..........+++. .
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK 315 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence 4667778888777665 4999999999988887754332 11211112223432 2
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCC------------CCe------------------------EEEEEcCCCC
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHM------------GPV------------------------KVMRYNPVFD 98 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~------------~~V------------------------~~l~~sp~~~ 98 (513)
+++.++.++.+.++|.. +++.+....... .++ ..++++|+..
T Consensus 316 ~v~~~~~~G~l~~lD~~--tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRT--NGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEECCTTSEEEEEETT--TCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEECCCCEEEEEECC--CCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 67888899999999987 777774433111 000 1267778766
Q ss_pred EEEEEc------------------------------------CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCc
Q 010302 99 TVISAD------------------------------------DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 99 ~l~s~s------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
++.... .++.|..||+.+++. .|+.+ .+ .
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~-----~W~~~---------~~-~ 458 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-----AWKVP---------YP-T 458 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-----EEEEE---------ES-S
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE-----EEEcc---------CC-C
Confidence 655421 235566677666432 22222 11 1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
......+...+.+++.++.|+.++.||.++|+.+..+.
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 12223344467788889999999999999999988764
No 304
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.32 E-value=0.025 Score=53.69 Aligned_cols=154 Identities=9% Similarity=0.044 Sum_probs=89.2
Q ss_pred CeEecCCCEEEEEeCCC--cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc-c
Q 010302 1 MQVSVDGLLCCSISNDK--SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE-P 77 (513)
Q Consensus 1 v~~s~dg~~las~s~D~--~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~-~ 77 (513)
|+++++|+++++..... .|..+|..+++......+.. ......+...+.+. ++++...++.|..+|.. .++ .
T Consensus 77 ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~--~~~~~ 151 (306)
T 2p4o_A 77 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQ--YLTADSYRGAIWLIDVV--QPSGS 151 (306)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSE--EEEEETTTTEEEEEETT--TTEEE
T ss_pred EEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC-ccccCcccccCCCc--EEEEECCCCeEEEEeCC--CCcEe
Confidence 46889999777654432 46677777777654444321 12234444434333 56666667888888875 321 1
Q ss_pred eEEee---------cCCCCeEEEEEcCCCCEE-EEEcCCCcEEEecCCC-CCCCCcceeeeecCCccccccccCCcceEE
Q 010302 78 LISKK---------VHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 78 i~~~~---------~h~~~V~~l~~sp~~~~l-~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
+.... ........+ +|+++.| ++-...+.|..+++.. ++. . ....+.. ......
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-----------~-~~~~~~~-~~~P~g 216 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-----------G-EPEIFVE-QTNIDD 216 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-----------C-CCEEEEE-SCCCSS
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-----------C-ccEEEec-cCCCCC
Confidence 11110 111234455 7888765 5555677899998754 221 0 0011111 134567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q 010302 147 IEVSPDGKQFSITSPDRRIRVFWFRTGKL 175 (513)
Q Consensus 147 v~~spdg~~l~s~s~D~~I~iwd~~tg~~ 175 (513)
++++++|+++++....+.|.++|.. |+.
T Consensus 217 i~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 217 FAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp EEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred eEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 9999999987777778889999864 655
No 305
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.31 E-value=0.024 Score=55.91 Aligned_cols=151 Identities=9% Similarity=-0.049 Sum_probs=88.4
Q ss_pred CeEecCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|++.++.|..+ ...+.|+.++.........+. ........+++.+.+.. +.++....+.|.+.++. +....
T Consensus 121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~d---g~~~~ 194 (386)
T 3v65_B 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLD---GAHRK 194 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--SSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTT---SCSCE
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--CCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCC---CCceE
Confidence 3577655544444 456788888887654333322 11123345566654332 66777777889988885 33333
Q ss_pred E-eecCCCCeEEEEEcCCCCEEEEEc-CC-CcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCE
Q 010302 80 S-KKVHMGPVKVMRYNPVFDTVISAD-DK-GIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 80 ~-~~~h~~~V~~l~~sp~~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 155 (513)
. +.........++++|.+..|..+. .. +.|...++.. .....+. ..-...+.++|+|++..
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG---------------~~~~~~~~~~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---------------SGRRIIADTHLFWPNGLTIDYAGRR 259 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---------------CSCEEEECSSCSCEEEEEEEGGGTE
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC---------------CCcEEEEECCCCCeeeEEEeCCCCE
Confidence 3 333345678999999766554444 34 5677776643 1122221 22346889999987776
Q ss_pred EEEEe-CCCcEEEEEcCC
Q 010302 156 FSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 156 l~s~s-~D~~I~iwd~~t 172 (513)
|..+. ..+.|..+|+..
T Consensus 260 lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 260 MYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEETTTTEEEEECTTS
T ss_pred EEEEECCCCEEEEEeCCC
Confidence 65444 567788888653
No 306
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.30 E-value=0.029 Score=53.62 Aligned_cols=159 Identities=12% Similarity=-0.044 Sum_probs=90.9
Q ss_pred eEec-CCCEEEEEeCCCcEEEEEccCCceeEEEEc-CC-CCCcEEEEEEcC-CCcceEEEEeCC----------------
Q 010302 2 QVSV-DGLLCCSISNDKSVKIYDVVNYDMMLMIRL-PF-IPGAVEWVYKQG-DVKAGLAISDRN---------------- 61 (513)
Q Consensus 2 ~~s~-dg~~las~s~D~~v~iwd~~~~~~~~~~~l-~~-~~~~v~~v~~s~-~~~~~~l~s~~~---------------- 61 (513)
++++ +|++++ +...+.|..+|..++........ .. .......+...+ ++. +.++...
T Consensus 86 ~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 86 SYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTC
T ss_pred EEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccC
Confidence 5676 565555 44445588888765443222110 11 113467788888 776 5555432
Q ss_pred -CCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEE-cCCCcEEEecCCCCCCCCcceeeeecCCcccccccc
Q 010302 62 -SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISA-DDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 139 (513)
Q Consensus 62 -d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (513)
++.|..||.. +++.. .+.........++|+|+++.|..+ +..+.|..+++..... +. ...+..
T Consensus 163 ~~g~v~~~d~~--~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-----------~~-~~~~~~ 227 (322)
T 2fp8_A 163 KTGRLIKYDPS--TKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-----------GT-AEVLVK 227 (322)
T ss_dssp CCEEEEEEETT--TTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-----------TC-EEEEEE
T ss_pred CCceEEEEeCC--CCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-----------Cc-cceEEe
Confidence 3668888874 33322 222122334679999999866444 5668898888764211 00 111111
Q ss_pred CCcceEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEec
Q 010302 140 SKTTVSAIEVSPDGKQFSITSP----------DRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s~----------D~~I~iwd~~tg~~~~~~~ 180 (513)
..+ +..+++.++|+++++... .+.|..+|. .|+.+..+.
T Consensus 228 ~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~ 276 (322)
T 2fp8_A 228 IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP 276 (322)
T ss_dssp CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE
T ss_pred CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEE
Confidence 223 788999999997776544 356777775 466665553
No 307
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.28 E-value=0.0019 Score=70.00 Aligned_cols=109 Identities=6% Similarity=-0.053 Sum_probs=66.6
Q ss_pred eEe-cCCCEEEEEeC-C----CcEEEEEccCC-ceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC---CeEEEEecC
Q 010302 2 QVS-VDGLLCCSISN-D----KSVKIYDVVNY-DMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS---SFVHIYDAR 71 (513)
Q Consensus 2 ~~s-~dg~~las~s~-D----~~v~iwd~~~~-~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d---~~I~iwd~~ 71 (513)
+|| |||++||-+.. + .+|+++|+.++ +.+.. .+ ......+.|+|+++.++.++.... ..|..+++.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 689 99999986643 2 25999999988 63211 01 111235789999986555543322 357777775
Q ss_pred CCCCc--ceEEee-cCCCCeEEEEEcCCCCEEEEEcC---CCcEEEecCCC
Q 010302 72 ADSNE--PLISKK-VHMGPVKVMRYNPVFDTVISADD---KGIIEYWSPHT 116 (513)
Q Consensus 72 ~~~~~--~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~---dg~i~iwd~~~ 116 (513)
+++ ....+. .+.....++.|+|||++|+..+. ...|.++|+.+
T Consensus 256 --t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 256 --KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp --SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred --CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 432 223332 23345678899999998865542 23466677755
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.23 E-value=0.19 Score=54.33 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=104.9
Q ss_pred eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--CcceEEeecCCCCeEEE
Q 010302 14 SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVM 91 (513)
Q Consensus 14 s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~--~~~i~~~~~h~~~V~~l 91 (513)
+....|+..++...+...... ....+..+.+.+.... ++++....+.|+.+++.... ......+.........|
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~---~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEEC---SCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccccceeEeeccCCcceeeec---CCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 344567777776655433322 2345677888764443 66777778889988885211 12233333344556789
Q ss_pred EEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeC-C-CcEEE
Q 010302 92 RYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP-D-RRIRV 167 (513)
Q Consensus 92 ~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~-D-~~I~i 167 (513)
++.+.++.| ++-...+.|.+.++... ....+. ..-..+..|++.|.+.+|..... . +.|..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~---------------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGV---------------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 541 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSS---------------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCC---------------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEE
Confidence 999876544 55556788888887541 122222 23345889999997666554442 2 56777
Q ss_pred EEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc--ceEEE
Q 010302 168 FWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIV 245 (513)
Q Consensus 168 wd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~--gi~v~ 245 (513)
.++........+. .....+..+++|+.+..|.++... .|.++
T Consensus 542 ~~~dG~~~~~lv~------------------------------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~ 585 (791)
T 3m0c_C 542 GGLNGVDIYSLVT------------------------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSI 585 (791)
T ss_dssp EETTSCCEEEEEC------------------------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EecCCCceEEEEe------------------------------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEE
Confidence 7764322211111 111245678999777766665432 47777
Q ss_pred EcccC
Q 010302 246 NLHTN 250 (513)
Q Consensus 246 d~~t~ 250 (513)
++...
T Consensus 586 d~dG~ 590 (791)
T 3m0c_C 586 DVNGG 590 (791)
T ss_dssp ETTSC
T ss_pred ecCCC
Confidence 77543
No 309
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.19 E-value=0.016 Score=60.52 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=88.9
Q ss_pred CcEEEEEccCCceeEEEEcCCCCC-------cEEEEEEc-CCCcc-eEEEEeCCCCeEEEEecCCCCCcceEEeecCC--
Q 010302 17 KSVKIYDVVNYDMMLMIRLPFIPG-------AVEWVYKQ-GDVKA-GLAISDRNSSFVHIYDARADSNEPLISKKVHM-- 85 (513)
Q Consensus 17 ~~v~iwd~~~~~~~~~~~l~~~~~-------~v~~v~~s-~~~~~-~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~-- 85 (513)
++|..+|..+++.+-..+...|.. ....+... .+++. .+++.++.++.++++|.. +++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~--tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS--NGKLQNAFPFVDNI 368 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT--TCCEEEEEESSSCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC--CCCEecccccccCc
Confidence 589999999999988877543321 11111111 34432 267788899999999987 777776654221
Q ss_pred -----------CCe--------------------------------EEEEEcCCCCEEEEEc------------------
Q 010302 86 -----------GPV--------------------------------KVMRYNPVFDTVISAD------------------ 104 (513)
Q Consensus 86 -----------~~V--------------------------------~~l~~sp~~~~l~s~s------------------ 104 (513)
.++ ..++++|+..+++...
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 000 1346677655554432
Q ss_pred ---------------CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010302 105 ---------------DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 169 (513)
Q Consensus 105 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd 169 (513)
.++.|..||+.+++. .|+.+... .+..-.....+..++.++.|+.++.||
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~-----~W~~~~~~----------~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKV-----VWEHKEHL----------PLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCE-----EEEEEESS----------CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCE-----EEEecCCC----------CCcccceEeCCCEEEEECCCCcEEEEE
Confidence 246677777776542 33332111 111111112466777789999999999
Q ss_pred cCCCeEEEEec
Q 010302 170 FRTGKLRRVYD 180 (513)
Q Consensus 170 ~~tg~~~~~~~ 180 (513)
.++|+.+..++
T Consensus 514 ~~tG~~lW~~~ 524 (582)
T 1flg_A 514 AKSGKELWKFQ 524 (582)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCCEEEEec
Confidence 99999988764
No 310
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.16 E-value=0.027 Score=51.36 Aligned_cols=142 Identities=12% Similarity=0.054 Sum_probs=90.4
Q ss_pred cCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec
Q 010302 5 VDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 5 ~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
++++.|... -.++.+.+||..+++.+..+...... ..++ +++.. +++|. .++.|.++|.. +.+.+.++..
T Consensus 72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt--~dg~~-L~vSd-gs~~l~~iDp~--t~~~~~~I~V 142 (243)
T 3mbr_X 72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALT--SDDSH-LYMSD-GTAVIRKLDPD--TLQQVGSIKV 142 (243)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEE--ECSSC-EEEEC-SSSEEEEECTT--TCCEEEEEEC
T ss_pred EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEe--eCCCE-EEEEC-CCCeEEEEeCC--CCeEEEEEEE
Confidence 344444444 46899999999999999988865322 3333 34442 55554 47889999997 8888888763
Q ss_pred CC-----CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccc----ccCCcceEEEEEcCCCC
Q 010302 84 HM-----GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI----LKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 84 h~-----~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~v~~spdg~ 154 (513)
.. ..+..+.|. +|+.++....+..|.+.|+++++.... .++ ....... .......+.|+++|+++
T Consensus 143 ~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~---idl--~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 143 TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW---IDL--QALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE---EEC--GGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE---EEC--CcCccccccccCCcCCceEEEEEcCCCC
Confidence 22 345567765 777777776788999999988764211 111 1111000 11224578999999888
Q ss_pred EEEEEeC
Q 010302 155 QFSITSP 161 (513)
Q Consensus 155 ~l~s~s~ 161 (513)
.|...+.
T Consensus 217 ~lfVTGK 223 (243)
T 3mbr_X 217 RLFVTGK 223 (243)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 7766653
No 311
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.15 E-value=0.087 Score=50.36 Aligned_cols=150 Identities=7% Similarity=-0.044 Sum_probs=85.4
Q ss_pred eEecCCCEEEEE-eCCCcEEEEEccCCcee-EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSVDGLLCCSI-SNDKSVKIYDVVNYDMM-LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~-s~D~~v~iwd~~~~~~~-~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
+|++.++.|..+ ...+.|..++....... ..+. ..-.....+++.+.+.. +.++....+.|.++++. +....
T Consensus 41 d~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~d---G~~~~ 114 (318)
T 3sov_A 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD---GSLRK 114 (318)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT---SCSCE
T ss_pred EEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECC---CCcEE
Confidence 466544333333 35567777777654221 1111 11123445666553332 66777778899999985 33333
Q ss_pred Eee-cCCCCeEEEEEcCCCCEEEEEc--CCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCE
Q 010302 80 SKK-VHMGPVKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 80 ~~~-~h~~~V~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 155 (513)
.+. ........++++|.+..|..+. ..+.|...++.. .....+. ..-...+.++++|++..
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG---------------~~~~~~~~~~l~~Pnglavd~~~~~ 179 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG---------------SSRFIIINSEIYWPNGLTLDYEEQK 179 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS---------------CSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC---------------CCeEEEEECCCCCccEEEEeccCCE
Confidence 332 3445678999999766655554 246677766532 1111221 12346789999997776
Q ss_pred EEEEe-CCCcEEEEEcCC
Q 010302 156 FSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 156 l~s~s-~D~~I~iwd~~t 172 (513)
|..+. ..+.|..+|+..
T Consensus 180 lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 180 LYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEEETTTTEEEEEETTS
T ss_pred EEEEECCCCEEEEEcCCC
Confidence 65544 567888888753
No 312
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.14 E-value=0.027 Score=51.84 Aligned_cols=142 Identities=9% Similarity=-0.047 Sum_probs=89.6
Q ss_pred ecCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 4 SVDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 4 s~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
.++|+.|... -.++.+.+||..+++.+..+...... ..++ +++.. +++|. .++.|.++|.. +.+.+.++.
T Consensus 102 t~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt--~Dg~~-L~vSd-Gs~~l~~iDp~--T~~v~~~I~ 172 (268)
T 3nok_A 102 ASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---WGLC--YWNGK-LVRSD-GGTMLTFHEPD--GFALVGAVQ 172 (268)
T ss_dssp EECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC---CCEE--EETTE-EEEEC-SSSEEEEECTT--TCCEEEEEE
T ss_pred EEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce---eEEe--cCCCE-EEEEC-CCCEEEEEcCC--CCeEEEEEE
Confidence 4455444444 46899999999999999988865332 2233 34442 44444 57899999987 888888776
Q ss_pred c--CC---CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccc----cccCCcceEEEEEcCCC
Q 010302 83 V--HM---GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE----ILKSKTTVSAIEVSPDG 153 (513)
Q Consensus 83 ~--h~---~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~spdg 153 (513)
. +. ..+..+.|. +|..++....+..|.+.|+++++.... +++ ...... ........+.||++|++
T Consensus 173 V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~---Idl--~~L~~~~~~~~~~~~~vlNGIA~dp~~ 246 (268)
T 3nok_A 173 VKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV---IDA--SALTRAVAGQVTNPEAVLNGIAVEPGS 246 (268)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE---EEC--HHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred eCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE---EEC--CCCcccccccccCcCCceEEEEEcCCC
Confidence 3 22 245677876 777777776788999999988764211 110 000000 01122457899999987
Q ss_pred CEEEEEe
Q 010302 154 KQFSITS 160 (513)
Q Consensus 154 ~~l~s~s 160 (513)
+.|...+
T Consensus 247 ~rlfVTG 253 (268)
T 3nok_A 247 GRIFMTG 253 (268)
T ss_dssp CCEEEEE
T ss_pred CEEEEeC
Confidence 6555544
No 313
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.12 E-value=0.25 Score=53.56 Aligned_cols=200 Identities=9% Similarity=0.061 Sum_probs=117.8
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC------CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP------FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP 77 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~------~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~ 77 (513)
.++|++.+ |+.++-|..||..++......... -....+.++...+++. ++..|..++-|..||.+ +++
T Consensus 365 d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--~lWigt~~~Gl~~~d~~--~~~- 438 (795)
T 4a2l_A 365 DKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS--LVYIGTHAGGLSILHRN--SGQ- 438 (795)
T ss_dssp CTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTT--EEEEEETTTEEEEEETT--TCC-
T ss_pred CCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC--EEEEEeCcCceeEEeCC--CCc-
Confidence 45666555 666777889998776543321110 1124577777665554 35555666678999986 443
Q ss_pred eEEee-----cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 78 LISKK-----VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 78 i~~~~-----~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
...+. .+...|.++...+++++.+... +| +.+||..+.+.. .+. .... .-.-....|.++...++
T Consensus 439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~----~~~--~~~~--~~~~~~~~i~~i~~d~~ 508 (795)
T 4a2l_A 439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFT----TIE--KEKD--GTPVVSKQITTLFRDSH 508 (795)
T ss_dssp EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEE----ECC--BCTT--CCBCCCCCEEEEEECTT
T ss_pred EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEE----Ecc--cccc--ccccCCceEEEEEECCC
Confidence 33332 2345799999988888766554 54 778887663320 000 0000 00113357899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
|+..+... +-|..||..+++. .+.... .. ..+ ....+.++..|++|+
T Consensus 509 g~lWigt~--~Gl~~~~~~~~~~--~~~~~~---------~~-----------------~~l---~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 509 KRLWIGGE--EGLSVFKQEGLDI--QKASIL---------PV-----------------SNV---TKLFTNCIYEASNGI 555 (795)
T ss_dssp CCEEEEES--SCEEEEEEETTEE--EECCCS---------CS-----------------CGG---GGSCEEEEEECTTSC
T ss_pred CCEEEEeC--CceEEEeCCCCeE--EEecCC---------CC-----------------CCC---CCCeeEEEEECCCCC
Confidence 98777544 5688899888765 332100 00 000 011234677889999
Q ss_pred EEEEccccceEEEEcccCcEE
Q 010302 233 FLIYATLLGIKIVNLHTNKVS 253 (513)
Q Consensus 233 ~li~~s~~gi~v~d~~t~~~v 253 (513)
+.+.... |+..||..+++..
T Consensus 556 lWigT~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 556 IWVGTRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEEEESS-CEEEEETTTTEEE
T ss_pred EEEEeCC-CceeECCCCCcEE
Confidence 7765554 9999999877644
No 314
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.11 E-value=0.017 Score=60.27 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=88.9
Q ss_pred cEEEEEccCCceeEEEEcCCCCC-------cEEEEEEcCCCcc-eEEEEeCCCCeEEEEecCCCCCcceEEeecCC----
Q 010302 18 SVKIYDVVNYDMMLMIRLPFIPG-------AVEWVYKQGDVKA-GLAISDRNSSFVHIYDARADSNEPLISKKVHM---- 85 (513)
Q Consensus 18 ~v~iwd~~~~~~~~~~~l~~~~~-------~v~~v~~s~~~~~-~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~---- 85 (513)
.|..+|..+++.+-......+.. ....+....+++. .+++.++.++.+.++|.. +++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~--tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE--NGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT--TCCEEEEEESSTTCCS
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC--CCCEEeeecccCCccc
Confidence 59999999999887777543211 1111221224431 256677889999999987 777776654211
Q ss_pred ---------CCe--------------------------EEEEEcCCCCEEEEEcC-------------------------
Q 010302 86 ---------GPV--------------------------KVMRYNPVFDTVISADD------------------------- 105 (513)
Q Consensus 86 ---------~~V--------------------------~~l~~sp~~~~l~s~s~------------------------- 105 (513)
.++ ..++++|+..+++....
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 24678888777766542
Q ss_pred ------------CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010302 106 ------------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 173 (513)
Q Consensus 106 ------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg 173 (513)
++.+..||+.+++. .|..+.. ..+.+..+...+..+..++.|+.|+.||.++|
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~-----~W~~~~~----------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKA-----KWTKWEK----------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCE-----EEEEEES----------SCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred eccCccccCCCCCCeEEEEECCCCCE-----EEEecCC----------CCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 35667777766442 2222211 11111222224566777899999999999999
Q ss_pred eEEEEec
Q 010302 174 KLRRVYD 180 (513)
Q Consensus 174 ~~~~~~~ 180 (513)
+.+..++
T Consensus 496 ~~lw~~~ 502 (571)
T 2ad6_A 496 KELWNFK 502 (571)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9988764
No 315
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.00 E-value=0.0067 Score=65.00 Aligned_cols=200 Identities=11% Similarity=0.023 Sum_probs=108.1
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccC----CceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCC
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVN----YDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN 75 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~----~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~ 75 (513)
|+|++++..|..+. ..+.|+.+++.+ ......+ .........+++.+.+.. ++++....+.|.++++. +
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~d---g 484 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK---G 484 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--CSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBSS---S
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--eCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEecC---C
Confidence 56777666665553 467888888864 1111111 111112344566544332 56666677889999985 3
Q ss_pred cceEEee-cCCCCeEEEEEcCCCCEEEEEcC-C-CcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcC
Q 010302 76 EPLISKK-VHMGPVKVMRYNPVFDTVISADD-K-GIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSP 151 (513)
Q Consensus 76 ~~i~~~~-~h~~~V~~l~~sp~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp 151 (513)
..+..+. ........++++|.+.+|+.+.. . +.|..+++... ....+. ..-...+.|+|+|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---------------~~~~l~~~~l~~PnGlavd~ 549 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------------DIYSLVTENIQWPNGITLDL 549 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---------------CCCEESCSSCSSCCCEEECT
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---------------CeeEEEeCCCCCccEEEEec
Confidence 3333332 22344578899986555544432 2 56776665321 111111 1224577899999
Q ss_pred CCCEEE-EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 152 DGKQFS-ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 152 dg~~l~-s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++..|. +-+..+.|..+++........+.. ......+..++++.+
T Consensus 550 ~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~----------------------------------~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 550 LSGRLYWVDSKLHSISSIDVNGGNRKTILED----------------------------------EKRLAHPFSLAVFED 595 (699)
T ss_dssp TTCCEEEEETTTTEEEEECSSSSCCEEECCC----------------------------------SSSCSSCCCCEEETT
T ss_pred cCCEEEEEecCCCeEEEEccCCCceEEEEec----------------------------------CCcCCCceEeEEECC
Confidence 766554 444567888888753222111110 000123345666654
Q ss_pred CCEEEEcc--ccceEEEEcccCcEEEEeC
Q 010302 231 SNFLIYAT--LLGIKIVNLHTNKVSRILG 257 (513)
Q Consensus 231 g~~li~~s--~~gi~v~d~~t~~~v~~~g 257 (513)
.|++.. ...|.++|..+|+.+.++.
T Consensus 596 --~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 596 --KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp --EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred --EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 333332 3358999998999888774
No 316
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.99 E-value=0.26 Score=53.46 Aligned_cols=199 Identities=12% Similarity=0.097 Sum_probs=116.8
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC---C-CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP---F-IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~---~-~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
.++|.+.+ |+.++-|..|+..+.......... . ....|.++....++. +..|..++-|..|+.. +.+. .
T Consensus 318 D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~---lWiGt~~~Gl~~~~~~--~~~~-~ 390 (795)
T 4a2l_A 318 DSQGGMWL-GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN---LWIGTNDGGLNLYNPI--TQRF-T 390 (795)
T ss_dssp CTTSCEEE-EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC---EEEEESSSCEEEECTT--TCCE-E
T ss_pred eCCcCEEE-EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC---EEEEECCCCeEEEcCC--CCcE-E
Confidence 45566554 566677888887654432211111 0 123577777766654 3345555568888875 3332 2
Q ss_pred Eee---------cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc
Q 010302 80 SKK---------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 150 (513)
Q Consensus 80 ~~~---------~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 150 (513)
.+. .....|.++...++++.|..|+.++-|..+|..+++.. .+. ... -......|.++...
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~----~~~--~~~----~~l~~~~v~~i~~d 460 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE----NFN--QRN----SQLVNENVYAILPD 460 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE----EEC--TTT----SCCSCSCEEEEEEC
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE----Eee--cCC----CCcCCCeeEEEEEC
Confidence 221 12357899999889984555666666888988764320 000 000 00234579999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC
Q 010302 151 PDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 230 (513)
Q Consensus 151 pdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~ 230 (513)
++|+..+.. . +-+.+||..+++....... ..+. ......+..+..|++
T Consensus 461 ~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~---------~~~~---------------------~~~~~~i~~i~~d~~ 508 (795)
T 4a2l_A 461 GEGNLWLGT-L-SALVRFNPEQRSFTTIEKE---------KDGT---------------------PVVSKQITTLFRDSH 508 (795)
T ss_dssp SSSCEEEEE-S-SCEEEEETTTTEEEECCBC---------TTCC---------------------BCCCCCEEEEEECTT
T ss_pred CCCCEEEEe-c-CceeEEeCCCCeEEEcccc---------cccc---------------------ccCCceEEEEEECCC
Confidence 999876654 3 4588899888765331100 0000 000123346778999
Q ss_pred CCEEEEccccceEEEEcccCcE
Q 010302 231 SNFLIYATLLGIKIVNLHTNKV 252 (513)
Q Consensus 231 g~~li~~s~~gi~v~d~~t~~~ 252 (513)
|++.+... .|+..+|..+++.
T Consensus 509 g~lWigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 509 KRLWIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp CCEEEEES-SCEEEEEEETTEE
T ss_pred CCEEEEeC-CceEEEeCCCCeE
Confidence 99777665 8999999988876
No 317
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.91 E-value=0.1 Score=50.20 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=108.8
Q ss_pred EEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCC----CC---EE-EEEcC--CCcEEEecC--CCCCCCCc
Q 010302 55 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV----FD---TV-ISADD--KGIIEYWSP--HTLQFPES 122 (513)
Q Consensus 55 ~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~----~~---~l-~s~s~--dg~i~iwd~--~~~~~~~~ 122 (513)
+++.....+-+.+||+ +++.++.+.. ..+..+..-|. |+ ++ ++.-. +++|++|++ .+.+
T Consensus 42 ~ii~t~k~~gL~Vydl---~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---- 112 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL---DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---- 112 (355)
T ss_dssp EEEEEETTTEEEEEET---TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----
T ss_pred EEEEEcCCCCEEEEcC---CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----
Confidence 4555556678999999 6888888753 45666666553 22 22 33334 578999955 3321
Q ss_pred ceeeeecCCccccccc------cCC-cceEEEEE--cCC-CC-EEEEEeCCCcEEEEEcC-------CCeEEEEecccHH
Q 010302 123 EVSFRLKSDTNLFEIL------KSK-TTVSAIEV--SPD-GK-QFSITSPDRRIRVFWFR-------TGKLRRVYDESLE 184 (513)
Q Consensus 123 ~~~~~~~~~~~~~~~~------~~~-~~v~~v~~--spd-g~-~l~s~s~D~~I~iwd~~-------tg~~~~~~~~~~~ 184 (513)
+..+. ... ..+..+|+ +|. ++ ++.+...++.+..|++. +++.++++.-
T Consensus 113 -----------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--- 178 (355)
T 3amr_A 113 -----------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--- 178 (355)
T ss_dssp -----------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---
T ss_pred -----------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---
Confidence 11111 111 45667888 774 44 56777789999999883 2344444421
Q ss_pred HHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEccc-cceEEEEcc-----cCcEEEEeCC
Q 010302 185 VAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLH-----TNKVSRILGK 258 (513)
Q Consensus 185 ~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~-~gi~v~d~~-----t~~~v~~~g~ 258 (513)
...+..++.|+....|.++-. .||..++.. +++++..++.
T Consensus 179 ----------------------------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~ 224 (355)
T 3amr_A 179 ----------------------------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG 224 (355)
T ss_dssp ----------------------------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS
T ss_pred ----------------------------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC
Confidence 112346778876666666643 567777755 4566666643
Q ss_pred CCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 010302 259 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 320 (513)
Q Consensus 259 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~~ 320 (513)
....--.--+++|.+. ...+.||+|.=.+.++.+|.++.+
T Consensus 225 g~l~aDvEGLai~~~~----------------------~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 225 RHLTRDIEGLTIYYAA----------------------DGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp SSBCSCEEEEEEEECG----------------------GGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CccccCcceEEEEecC----------------------CCCEEEEEEcCCCCEEEEEECCCC
Confidence 2100011123333210 123468888878889999988643
No 318
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.88 E-value=0.33 Score=46.27 Aligned_cols=180 Identities=12% Similarity=-0.039 Sum_probs=101.0
Q ss_pred CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcC
Q 010302 16 DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP 95 (513)
Q Consensus 16 D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp 95 (513)
...|+..++........+.+. .......+.|.+.... +.++....+.|..+++.... .....+.........+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~-~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSS-CCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCC-ceEEEEcCCCCCccEEEEEc
Confidence 567899999765311111111 1124556777764332 77777888899999986221 11122222234457899987
Q ss_pred C-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeC--CCcEEEEEcC
Q 010302 96 V-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP--DRRIRVFWFR 171 (513)
Q Consensus 96 ~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~--D~~I~iwd~~ 171 (513)
. ++++++-...+.|.++++.... ...+. ..-..+..+++.|.+..|..... .+.|..+++.
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~---------------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSL---------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCS---------------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CCCeEEEEECCCCEEEEEECCCCc---------------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 5 4455565667789888875411 11121 23346789999997666554442 4566666653
Q ss_pred CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc--ceEEEEccc
Q 010302 172 TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLHT 249 (513)
Q Consensus 172 tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~--gi~v~d~~t 249 (513)
- .....+- . .....+..+++|+++..|.++... .|..+|+..
T Consensus 154 G-~~~~~~~------------------------------~-----~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 154 G-SSRFIII------------------------------N-----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp S-CSCEEEE------------------------------C-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C-CCeEEEE------------------------------E-----CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 2 1111110 0 011234678999877766665432 477777753
No 319
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.87 E-value=0.3 Score=46.85 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=119.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcC----CCcc--eEEEEeCC--CCeEEEEecCCCCCcc
Q 010302 6 DGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQG----DVKA--GLAISDRN--SSFVHIYDARADSNEP 77 (513)
Q Consensus 6 dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~----~~~~--~~l~s~~~--d~~I~iwd~~~~~~~~ 77 (513)
...+++....++-+.+||+ +++.+..+.. +.++.+...+ .+.. +.+++.-. +++|.+|++...+. .
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-T 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-C
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-c
Confidence 4456666777889999999 7777776541 3445444433 2222 34566666 78999997742233 3
Q ss_pred eEEeec------CC-CCeEEEEE--cCC-CC-EEEEEcCCCcEEEecCCC---CCCCCcceeeeecCCccccccccCCcc
Q 010302 78 LISKKV------HM-GPVKVMRY--NPV-FD-TVISADDKGIIEYWSPHT---LQFPESEVSFRLKSDTNLFEILKSKTT 143 (513)
Q Consensus 78 i~~~~~------h~-~~V~~l~~--sp~-~~-~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (513)
+..+.. .. ..+..+++ +|. +. +++....+|.+..|++.. ++. ..+.+.++. ..+.
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~----------~~~lVR~f~-lgsq 181 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI----------SGKKVRAFK-MNSQ 181 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE----------EEEEEEEEE-CSSC
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc----------cceEEEEec-CCCC
Confidence 555421 11 45566777 774 44 577788889999987732 111 122233333 2356
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC-----CCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccC
Q 010302 144 VSAIEVSPDGKQFSITSPDRRIRVFWFR-----TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE 218 (513)
Q Consensus 144 v~~v~~spdg~~l~s~s~D~~I~iwd~~-----tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~ 218 (513)
+-.+...+....|..+-.+.-|..++.+ +++.+..+.. + ..
T Consensus 182 ~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-----------------------g-----------~l 227 (355)
T 3amr_A 182 TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-----------------------R-----------HL 227 (355)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-----------------------S-----------SB
T ss_pred cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-----------------------C-----------cc
Confidence 8889999888888888888777666754 3455443311 0 00
Q ss_pred CCCCCceEE--cCCCC-EEEEcc--ccceEEEEcc-cCcEEEEe
Q 010302 219 TAPPSNAIF--DESSN-FLIYAT--LLGIKIVNLH-TNKVSRIL 256 (513)
Q Consensus 219 ~~~~~~i~f--d~~g~-~li~~s--~~gi~v~d~~-t~~~v~~~ 256 (513)
...+..++. .++|+ ||+.++ .....|||.. +++.+..+
T Consensus 228 ~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 228 TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 001122333 55666 676665 3358899996 77777766
No 320
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.81 E-value=0.048 Score=57.03 Aligned_cols=78 Identities=12% Similarity=-0.040 Sum_probs=50.3
Q ss_pred EecCCCEEEEEeCC----------------CcEEEEEccCCceeEEEEcCCCCC-------cEEEEEEc-CCCcc-eEEE
Q 010302 3 VSVDGLLCCSISND----------------KSVKIYDVVNYDMMLMIRLPFIPG-------AVEWVYKQ-GDVKA-GLAI 57 (513)
Q Consensus 3 ~s~dg~~las~s~D----------------~~v~iwd~~~~~~~~~~~l~~~~~-------~v~~v~~s-~~~~~-~~l~ 57 (513)
+.++..++..+..+ .+|..+|..+++.+-..+...|.. ....+... .+++. .+++
T Consensus 248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~ 327 (599)
T 1w6s_A 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT 327 (599)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence 44566666666544 479999999999988877654321 11111111 34421 2677
Q ss_pred EeCCCCeEEEEecCCCCCcceEEee
Q 010302 58 SDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 58 s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
.++.++.+.++|.. +++.+....
T Consensus 328 ~~~~~G~l~~lD~~--tG~~lw~~~ 350 (599)
T 1w6s_A 328 HPDRNGIVYTLDRT--DGALVSANK 350 (599)
T ss_dssp EECTTSEEEEEETT--TCCEEEEEE
T ss_pred EECCCcEEEEEECC--CCCEeeccc
Confidence 78899999999987 777776654
No 321
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.76 E-value=0.17 Score=54.65 Aligned_cols=152 Identities=8% Similarity=-0.072 Sum_probs=86.6
Q ss_pred eEecCCCEE-EEEeCCCcEEEEEccCCce--eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcce
Q 010302 2 QVSVDGLLC-CSISNDKSVKIYDVVNYDM--MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPL 78 (513)
Q Consensus 2 ~~s~dg~~l-as~s~D~~v~iwd~~~~~~--~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i 78 (513)
+|++.+..| .+-...+.|+.+++..... .....+.........+++.+.+.. ++++....+.|.+.++. +...
T Consensus 430 ~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld---G~~~ 505 (791)
T 3m0c_C 430 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK---GVKR 505 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT---SSSE
T ss_pred eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC---CCeE
Confidence 455543333 3333456677777754211 011111222234556777665543 77777888899999985 3444
Q ss_pred EEee-cCCCCeEEEEEcCCCCEEEEEcC-C-CcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcCCCC
Q 010302 79 ISKK-VHMGPVKVMRYNPVFDTVISADD-K-GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGK 154 (513)
Q Consensus 79 ~~~~-~h~~~V~~l~~sp~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~ 154 (513)
..+. ........|+++|.+..|+.+.. . +.|...++.. .....+.. .-.++..|++++.+.
T Consensus 506 ~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG---------------~~~~~lv~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 506 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---------------VDIYSLVTENIQWPNGITLDLLSG 570 (791)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---------------CCEEEEECSSCSCEEEEEEETTTT
T ss_pred EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC---------------CceEEEEeCCCCCceEEEEecCCC
Confidence 4443 34456789999997666655442 2 5677776633 22222222 235789999998777
Q ss_pred EEEEEe-CCCcEEEEEcCC
Q 010302 155 QFSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 155 ~l~s~s-~D~~I~iwd~~t 172 (513)
.|..+. ..+.|..+++..
T Consensus 571 ~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred eEEEEeCCCCcEEEEecCC
Confidence 666554 466788888754
No 322
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.73 E-value=0.087 Score=52.79 Aligned_cols=163 Identities=8% Similarity=-0.011 Sum_probs=96.4
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEccCCcee-EEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc-
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVVNYDMM-LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP- 77 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~~~~~~-~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~- 77 (513)
++++| +|.+.++-..++.|+.+|..++... ...... .......+++++++.. +.++....+.|..++.....+..
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~-LYvad~~~~~I~~~~~d~~~~~~~ 310 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTGDW-AYIIYNGKHCIYRVDYNRETGKLA 310 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTSSE-EEEEETTTTEEEEEEBCTTTCCBC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCCCE-EEEEeCCCCEEEEEeCCCCCcccC
Confidence 56788 7777766667788999999877652 222222 2223346899998864 56666778899998865222211
Q ss_pred -eEEeecC---------------CCCeEEEEE---------cCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCc
Q 010302 78 -LISKKVH---------------MGPVKVMRY---------NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 132 (513)
Q Consensus 78 -i~~~~~h---------------~~~V~~l~~---------sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 132 (513)
...+.+. -.....+++ .++++++++-...+.|+.++. ++.. ..-...+.
T Consensus 311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-----~t~~G~g~ 384 (433)
T 4hw6_A 311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-----TTYAGRGN 384 (433)
T ss_dssp CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-----EEEECCCT
T ss_pred cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-----EEEEeCCC
Confidence 1222221 123567898 677777777777888998875 2211 00000000
Q ss_pred -cc-------cccccCCcceEEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 010302 133 -NL-------FEILKSKTTVSAIEVS-PDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 133 -~~-------~~~~~~~~~v~~v~~s-pdg~~l~s~s~D~~I~iwd~~ 171 (513)
.. ......-..+..|+++ ++|.++++=...+.|+.++++
T Consensus 385 ~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 385 SREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 00 0000112357899999 677766666667888887754
No 323
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.70 E-value=0.049 Score=54.59 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=87.8
Q ss_pred EEEEEEcCC-CcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcC-CC----cEEEecCC
Q 010302 42 VEWVYKQGD-VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD-KG----IIEYWSPH 115 (513)
Q Consensus 42 v~~v~~s~~-~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg----~i~iwd~~ 115 (513)
...++++|. ... +.++... +.|+.+|+. . ..+..+.........++|++++++|+.+.. ++ .+.+.+.
T Consensus 139 P~~lavdp~~~g~-Lyv~d~~-~~I~~id~~--~-~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNH-LYLVGEQ-HPTRLIDFE--K-EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCEEEEETTEEEE-EEEEEBT-EEEEEEETT--T-TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCEEEECCCCCCe-EEEEeCC-CcEEEEECC--C-CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 456777763 332 4444333 788889885 3 334444444556789999999996555543 22 2222222
Q ss_pred CCCCCCcceeeeecCCccccccccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCC
Q 010302 116 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA 194 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~ 194 (513)
.+.. .....+. ....+..++++| +|..+++-..++.|..|+..++........
T Consensus 213 ~g~~------------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~------------- 266 (430)
T 3tc9_A 213 ESGF------------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI------------- 266 (430)
T ss_dssp GGTS------------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-------------
T ss_pred CCce------------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-------------
Confidence 2111 0001111 123467889999 777776666788999999887654221100
Q ss_pred CccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcc--ccceEEEEcc
Q 010302 195 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT--LLGIKIVNLH 248 (513)
Q Consensus 195 ~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s--~~gi~v~d~~ 248 (513)
.....+..++|+++|++|.... ...|.+++..
T Consensus 267 ----------------------~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 267 ----------------------QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ----------------------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ----------------------CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 0112346799999999655543 3347777765
No 324
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.63 E-value=0.079 Score=56.24 Aligned_cols=101 Identities=8% Similarity=0.021 Sum_probs=65.0
Q ss_pred eEEEEecCCCCCcceEEeec-CCCCeEEEEEcCCCCEEEEEcC-CCcEEEecCCCCCCCCcceeeeecCCccccccccCC
Q 010302 64 FVHIYDARADSNEPLISKKV-HMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 141 (513)
Q Consensus 64 ~I~iwd~~~~~~~~i~~~~~-h~~~V~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (513)
.+.+||+.......+..+.. +.....++++.+++++++.|+. +..+.+||+.+.+. .. +..+...
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-------~~-----~~~~~~~- 286 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------IP-----GPDMQVA- 286 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------EE-----CCCCSSC-
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCce-------eE-----CCCCCcc-
Confidence 58899987555555555432 3334456778889999999984 45789998866321 11 1111111
Q ss_pred cceEEEEEcCCCCEEEEEe-CC-----CcEEEEEcCCCeEEE
Q 010302 142 TTVSAIEVSPDGKQFSITS-PD-----RRIRVFWFRTGKLRR 177 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s~s-~D-----~~I~iwd~~tg~~~~ 177 (513)
..-.+++..++|+.++.|+ .+ ..+.+||..+.+...
T Consensus 287 R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 287 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 1123566678999999988 44 579999999887643
No 325
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.26 Score=53.41 Aligned_cols=201 Identities=13% Similarity=0.065 Sum_probs=116.2
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeec
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV 83 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~ 83 (513)
.++|++.+ |+.++-+..+|..+++.............+.++...+++. +.+... +-+..||.. +.+.......
T Consensus 415 d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~--~Gl~~~~~~--~~~~~~~~~~ 487 (781)
T 3v9f_A 415 DSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK--IWIGTH--AGVFVIDLA--SKKVIHHYDT 487 (781)
T ss_dssp CTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE--EEEEET--TEEEEEESS--SSSCCEEECT
T ss_pred CCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC--EEEEEC--CceEEEeCC--CCeEEecccC
Confidence 34566655 5555668888887655422211011234677777666554 444433 458888886 4333332221
Q ss_pred C-----CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc-CCcceEEEEEcCCCCEEE
Q 010302 84 H-----MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFS 157 (513)
Q Consensus 84 h-----~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~ 157 (513)
. ...|.++...++|++.+.....| +..+|..+.+. . ......+ ....|.++...++|+..+
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-------~-----~~~~~~~l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-------R-----KFNQYEGFCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-------E-----EECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred cccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-------E-----EccCCCCCCCCeeEEEEECCCCCEEE
Confidence 2 36789999999888766554455 66688765321 0 0000001 245689999999998776
Q ss_pred EEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEc
Q 010302 158 ITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 237 (513)
Q Consensus 158 s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~ 237 (513)
+.. +|.+..||..+++. ..+.... .+ ....+..++.|++|++.+..
T Consensus 555 ~T~-~Glv~~~d~~~~~~-~~~~~~~-----------------------------gl---~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 555 ATG-EGLVCFPSARNFDY-QVFQRKE-----------------------------GL---PNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EET-TEEEEESCTTTCCC-EEECGGG-----------------------------TC---SCCCCCEEEECSSSCEEEEC
T ss_pred EEC-CCceEEECCCCCcE-EEccccC-----------------------------CC---CCceEEEEEECCCCCEEEEc
Confidence 543 66558888877653 2222100 00 01123577889899876654
Q ss_pred cccceEEEEcccCcEEEEeCCCC
Q 010302 238 TLLGIKIVNLHTNKVSRILGKVE 260 (513)
Q Consensus 238 s~~gi~v~d~~t~~~v~~~g~~~ 260 (513)
..||..+|..+++ ++.+...+
T Consensus 601 -~~Gl~~~~~~~~~-~~~~~~~d 621 (781)
T 3v9f_A 601 -NTGISCYITSKKC-FYTYDHSN 621 (781)
T ss_dssp -SSCEEEEETTTTE-EEEECGGG
T ss_pred -CCceEEEECCCCc-eEEecccC
Confidence 6789999998765 44554433
No 326
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.58 E-value=0.079 Score=50.46 Aligned_cols=159 Identities=10% Similarity=0.043 Sum_probs=97.1
Q ss_pred eEecCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCC------CCcEEEEEE---cCCCcceEEEEe------------
Q 010302 2 QVSVDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFI------PGAVEWVYK---QGDVKAGLAISD------------ 59 (513)
Q Consensus 2 ~~s~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~------~~~v~~v~~---s~~~~~~~l~s~------------ 59 (513)
+|.+....|..++ ..++|..||...+..... .++.. ......+.+ .+.+. +++++.
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccccccccccccc
Confidence 5776444444455 799999999976554433 43321 114678888 46643 333332
Q ss_pred CCCCeEEEEecCC-CCCcceEEee--c-----------CCCCeEEEEEcCCCCEEEEEcCC-CcEEEecCCCCCCCCcce
Q 010302 60 RNSSFVHIYDARA-DSNEPLISKK--V-----------HMGPVKVMRYNPVFDTVISADDK-GIIEYWSPHTLQFPESEV 124 (513)
Q Consensus 60 ~~d~~I~iwd~~~-~~~~~i~~~~--~-----------h~~~V~~l~~sp~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~ 124 (513)
+.+..+..||+.. .+++.+.... . -......++..++|+..++++.. +.|...+...... .
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~----~ 172 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV----S 172 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE----E
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE----e
Confidence 1267799999850 1245554443 1 11247899999999999998877 7776666643110 0
Q ss_pred eeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 125 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
.|..... ........+.|+++|+|+.|++...++.|..+|+.
T Consensus 173 ~~~~~~~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 173 TFAWESG-----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECCC-----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeeecCC-----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1111110 01112236689999999988887779999999986
No 327
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.49 E-value=0.009 Score=63.99 Aligned_cols=137 Identities=9% Similarity=-0.016 Sum_probs=70.8
Q ss_pred CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC--CcceEEeecCCCCeEEEE
Q 010302 15 NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMR 92 (513)
Q Consensus 15 ~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~--~~~i~~~~~h~~~V~~l~ 92 (513)
....|+..++.+.+....+. ....+..+.|.+.... ++++....+.|+.+++.... ......+.........|+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp CTTC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred CccceEEEeCCCCcceeeec---cCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 34577777776654432221 2234556677665442 66666677889988885200 111111211122345688
Q ss_pred EcCC-CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeC-C-CcEEEE
Q 010302 93 YNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP-D-RRIRVF 168 (513)
Q Consensus 93 ~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~-D-~~I~iw 168 (513)
+.+. ++++++-...+.|.++++.... +..+. .....+..++++|.+.+|..... . +.|..+
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~---------------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVK---------------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCC---------------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCc---------------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 8764 4444555567788888875421 11121 12234678899986655443332 2 455555
Q ss_pred Ec
Q 010302 169 WF 170 (513)
Q Consensus 169 d~ 170 (513)
++
T Consensus 525 ~~ 526 (699)
T 1n7d_A 525 GL 526 (699)
T ss_dssp CS
T ss_pred eC
Confidence 44
No 328
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.37 E-value=0.098 Score=56.48 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=65.5
Q ss_pred CeEecCCCEEEEEeCC-----CcEEEEEccCCcee--EEEEcCCCCCcEEEEEEcCCCcceEEEEeC-CCCeEEEEecCC
Q 010302 1 MQVSVDGLLCCSISND-----KSVKIYDVVNYDMM--LMIRLPFIPGAVEWVYKQGDVKAGLAISDR-NSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~dg~~las~s~D-----~~v~iwd~~~~~~~--~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~-~d~~I~iwd~~~ 72 (513)
++|||||+.|+..+.| ..|.++++.++... ..... ........+.|+++++.+++.+.. ....|.++|+..
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 4799999988888765 25778888776422 22221 122345678899999865554433 345678888862
Q ss_pred CCCcc-eEEee-cCCCCeEEEEEcCCCCEEEEEcCC--C--cEEEecCC
Q 010302 73 DSNEP-LISKK-VHMGPVKVMRYNPVFDTVISADDK--G--IIEYWSPH 115 (513)
Q Consensus 73 ~~~~~-i~~~~-~h~~~V~~l~~sp~~~~l~s~s~d--g--~i~iwd~~ 115 (513)
+..+. +..+. .......++.|+..+.+++....+ + .|..+|+.
T Consensus 305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 22233 13333 444556666665444444555444 3 34445553
No 329
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.22 E-value=0.93 Score=47.59 Aligned_cols=151 Identities=7% Similarity=-0.031 Sum_probs=91.5
Q ss_pred CeEecCCCEEEEE-eCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSI-SNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~-s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|++++..|..+ ..++.|+.+++........+.. .......++..+.+.. +.++....+.|.+.++. +....
T Consensus 42 l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~--g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~d---G~~~~ 115 (628)
T 4a0p_A 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF--GLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLD---GQHRQ 115 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT---STTCE
T ss_pred EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC--CCCCcceEEEEeCCCE-EEEEECCCCEEEEEecC---CCcEE
Confidence 4677765555444 4577888888765443333321 1134556666654443 66777778899999985 33333
Q ss_pred Eee-cCCCCeEEEEEcCCCCEEEEEc--CCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEE
Q 010302 80 SKK-VHMGPVKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 156 (513)
Q Consensus 80 ~~~-~h~~~V~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 156 (513)
.+. ..-.....|+++|....|..+. ..+.|...++.. .....+...-.++..++++++++.|
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG---------------~~~~~l~~~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG---------------SERTTLVPNVGRANGLTIDYAKRRL 180 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---------------CSCEEEECSCSSEEEEEEETTTTEE
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC---------------CceEEEECCCCCcceEEEccccCEE
Confidence 332 3445568999999655555444 245666666533 2222222344578999999987766
Q ss_pred EEEe-CCCcEEEEEcCC
Q 010302 157 SITS-PDRRIRVFWFRT 172 (513)
Q Consensus 157 ~s~s-~D~~I~iwd~~t 172 (513)
..+. ..+.|..+|+..
T Consensus 181 Y~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEETTTTEEEEEETTS
T ss_pred EEEECCCCEEEEEcCCC
Confidence 6554 567888888754
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.13 E-value=0.62 Score=45.83 Aligned_cols=155 Identities=12% Similarity=0.177 Sum_probs=92.5
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC--CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC---C----
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF--IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS---N---- 75 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~--~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~---~---- 75 (513)
.+|..|+.+ .++.||.-++......+.++++. .-..+..+..+|++. +++..+ +..|.|-.+.... .
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~--lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD--LLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS--EEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC--EEEEec-CCeEEEEEecCccccCccccc
Confidence 344444443 25677777776444556666553 122466788899988 555443 4578888875211 0
Q ss_pred -c--ceEEeec------CCCCeEEEEEcCC---CCEEEEEcCCCcEEEecCCC-CCCCCcceeeeecCCccccccccCCc
Q 010302 76 -E--PLISKKV------HMGPVKVMRYNPV---FDTVISADDKGIIEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKT 142 (513)
Q Consensus 76 -~--~i~~~~~------h~~~V~~l~~sp~---~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (513)
. ..+.+.- ...+|..+.|+|- +..|++-..|++|++||+.. .+.|. .++ .....+.+.....
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~--k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLN--KPNNSFGLDARVN 180 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EES--CCCSEEESCSSCC
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chh--ccccccCCCcccc
Confidence 1 1123331 3578999999994 56899999999999999975 33332 111 1111122223345
Q ss_pred ceEEEEEcCCCCEEEEEe--CCCcEEEE
Q 010302 143 TVSAIEVSPDGKQFSITS--PDRRIRVF 168 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s--~D~~I~iw 168 (513)
.|.+++|.+++-.|-..+ ..|-|+-.
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 688999999776554433 66666544
No 331
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.09 E-value=1 Score=42.73 Aligned_cols=168 Identities=11% Similarity=0.088 Sum_probs=105.7
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
.+|..+.||--. ..++.|||+++...+....+. ..+..-.|..... +-+++. ..|..|++.. +..+.+.+.
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis~~~-L~lVT~---taVyHWs~~~-~s~P~kvFd 144 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNT-VALVTD---NAVYHWSMEG-ESQPVKMFD 144 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECSSSE-EEEEES---SEEEEEESST-TCCCEEEEE
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecCCCe-EEEEcC---CcEEEEcccC-CCCCceeee
Confidence 467778777665 789999999998887777754 5666667765543 345553 3699999963 567888877
Q ss_pred cCC----CCeEEEEEcCCCCEEEEEcC-------CCcEEEecCCCCC--------------------CCCcceeeeecC-
Q 010302 83 VHM----GPVKVMRYNPVFDTVISADD-------KGIIEYWSPHTLQ--------------------FPESEVSFRLKS- 130 (513)
Q Consensus 83 ~h~----~~V~~l~~sp~~~~l~s~s~-------dg~i~iwd~~~~~--------------------~~~~~~~~~~~~- 130 (513)
.|. ..|..-..+++.++++..+- .|.+.+|..+... .|...+.|..+.
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 553 45677777888888755431 3567777654321 111123333221
Q ss_pred -Cccccccc-----------------------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 131 -DTNLFEIL-----------------------KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 131 -~~~~~~~~-----------------------~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
+..++.+. ...+-..++..|+.-..+..-+.-|.|++||+.||.++..-
T Consensus 225 ~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 225 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 11111110 01233456666766667777788899999999999987653
No 332
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.95 E-value=1.2 Score=46.55 Aligned_cols=152 Identities=7% Similarity=-0.063 Sum_probs=88.2
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
|+|++.+..|..+. ..+.|..+++........+. ...-.....+++.+.+.. +.++....+.|.+.++. +....
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d---G~~~~ 119 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD---GSLRK 119 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-CSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT---SCSCE
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-eCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC---CCCEE
Confidence 35677655555444 45677777776432211211 122246778888775443 67777888999999985 44433
Q ss_pred Eee-cCCCCeEEEEEcCCCCEEEEEcC--CCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCE
Q 010302 80 SKK-VHMGPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 80 ~~~-~h~~~V~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 155 (513)
.+. ..-.....|+++|.+..|..+.. .+.|...++.. .....+. ..-.+++.++++++++.
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG---------------~~~~~l~~~~~~~P~Glald~~~~~ 184 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG---------------SSRFIIINSEIYWPNGLTLDYEEQK 184 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS---------------CSCEEEECSSCSSEEEEEEETTTTE
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC---------------CceEEEEeCCCCCCcEEEEEccCCE
Confidence 333 34445678999997655544442 34555444422 2222222 23356899999997766
Q ss_pred EEEEe-CCCcEEEEEcCC
Q 010302 156 FSITS-PDRRIRVFWFRT 172 (513)
Q Consensus 156 l~s~s-~D~~I~iwd~~t 172 (513)
|..+. ..+.|..+|+..
T Consensus 185 LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 185 LYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp EEEEETTTCCEEEESSSC
T ss_pred EEEEeCCCCeEEEecCCC
Confidence 65544 567788888754
No 333
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.94 E-value=1.1 Score=48.50 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=110.9
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEc-------CCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRL-------PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l-------~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
.++|.+.+ |+.++-|..|+..+......... ......+.++....++. +- .|..++-|..||.. +..
T Consensus 321 D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lW-igt~~~Gl~~~~~~--~~~ 394 (781)
T 3v9f_A 321 DSFNNIWI-GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LW-IGTDGGGINVFENG--KRV 394 (781)
T ss_dssp CSSCCEEE-EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EE-EEEBSSCEEEEETT--EEE
T ss_pred eCCCCEEE-EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EE-EEeCCCcEEEEECC--CCe
Confidence 34565444 55566677888765443222110 01224577777766554 33 33334457888874 221
Q ss_pred ceEEe----ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 77 PLISK----KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 77 ~i~~~----~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
. ..+ ......|.++...+++++.+ |+.++-+..+|..+.++ . ...........|.++...++
T Consensus 395 ~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-------~-----~~~~~~~~~~~v~~i~~d~~ 460 (781)
T 3v9f_A 395 A-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-------Q-----IIELEKNELLDVRVFYEDKN 460 (781)
T ss_dssp E-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE-------E-----ECCSTTTCCCCEEEEEECTT
T ss_pred E-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE-------E-----EeccCCCCCCeEEEEEECCC
Confidence 1 111 12346789999888887665 55555577888765321 0 00000113457999999888
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCC
Q 010302 153 GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 232 (513)
Q Consensus 153 g~~l~s~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~ 232 (513)
|+..+. +. +-|..||..+++........ .. ......+..+..|++|+
T Consensus 461 g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~----------~~---------------------~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 461 KKIWIG-TH-AGVFVIDLASKKVIHHYDTS----------NS---------------------QLLENFVRSIAQDSEGR 507 (781)
T ss_dssp SEEEEE-ET-TEEEEEESSSSSCCEEECTT----------TS---------------------SCSCSCEEEEEECTTCC
T ss_pred CCEEEE-EC-CceEEEeCCCCeEEecccCc----------cc---------------------ccccceeEEEEEcCCCC
Confidence 876664 44 56888898876543221100 00 00012334677899999
Q ss_pred EEEEccccceEEEEcccCcEEE
Q 010302 233 FLIYATLLGIKIVNLHTNKVSR 254 (513)
Q Consensus 233 ~li~~s~~gi~v~d~~t~~~v~ 254 (513)
+.+.....|+..+|..+++...
T Consensus 508 lWigt~~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 508 FWIGTFGGGVGIYTPDMQLVRK 529 (781)
T ss_dssp EEEEESSSCEEEECTTCCEEEE
T ss_pred EEEEEcCCCEEEEeCCCCeEEE
Confidence 7776655789999988776443
No 334
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.56 E-value=2.8 Score=43.92 Aligned_cols=185 Identities=9% Similarity=-0.059 Sum_probs=107.8
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCe
Q 010302 9 LCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPV 88 (513)
Q Consensus 9 ~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V 88 (513)
+|+.+ ....|+..++.+.+....+.+.. -.....+.+.+.... +.++...++.|..+++. .......+.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~--g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNR-IYWTDISLKTISRAFMN--GSALEHVVEFGLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTE-EEEEETTTTEEEEEETT--SCSCEEEECSSCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCE-EEEEECCCCeEEEEECC--CCCcEEEEeCCCCCc
Confidence 44433 45689999998765433333222 245778888876543 67777788999999985 222222333233456
Q ss_pred EEEEEcCCCCEE-EEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEEEeC--CCc
Q 010302 89 KVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP--DRR 164 (513)
Q Consensus 89 ~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s~s~--D~~ 164 (513)
..+++.+.+..| ++-...+.|.+.++.... ...+. ..-..+..+++.|....|..... .+.
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---------------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~ 147 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---------------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 147 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTT---------------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCc---------------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE
Confidence 789998765544 555567788888774311 11121 23345789999986555554432 345
Q ss_pred EEEEEcCCCeEEEEecccHHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCCCCEEEEcccc--ce
Q 010302 165 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GI 242 (513)
Q Consensus 165 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~g~~li~~s~~--gi 242 (513)
|...++..... ..+- .....+..+++|++++.|.++... .|
T Consensus 148 I~r~~~dG~~~-~~l~------------------------------------~~~~~P~GlalD~~~~~LY~aD~~~~~I 190 (628)
T 4a0p_A 148 IDRAAMDGSER-TTLV------------------------------------PNVGRANGLTIDYAKRRLYWTDLDTNLI 190 (628)
T ss_dssp EEEEETTSCSC-EEEE------------------------------------CSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEeCCCCce-EEEE------------------------------------CCCCCcceEEEccccCEEEEEECCCCEE
Confidence 55555432211 1110 012245678999988777666433 47
Q ss_pred EEEEcccC
Q 010302 243 KIVNLHTN 250 (513)
Q Consensus 243 ~v~d~~t~ 250 (513)
..+|+..+
T Consensus 191 ~~~d~dG~ 198 (628)
T 4a0p_A 191 ESSNMLGL 198 (628)
T ss_dssp EEEETTSC
T ss_pred EEEcCCCC
Confidence 77887543
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.48 E-value=2.2 Score=42.12 Aligned_cols=168 Identities=11% Similarity=0.083 Sum_probs=105.7
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
.+|..+.||-=. ..++.|||+++...+....+. ..+..-.|..... +-+++ +..|..|++.. +..+++.+.
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis~~~-l~lVT---~taVyHWsi~~-~s~P~kvFd 143 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNT-VALVT---DNAVYHWSMEG-ESQPVKMFD 143 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEETTE-EEEEC---SSEEEEEESSS-SCCCEEEEE
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecCCCe-EEEEc---CCeeEEecccC-CCCchhhee
Confidence 356777777655 789999999998877777754 3454445554433 23444 34699999963 557888887
Q ss_pred cCC----CCeEEEEEcCCCCEEEEEc-------CCCcEEEecCCCCC--------------------CCCcceeeeecCC
Q 010302 83 VHM----GPVKVMRYNPVFDTVISAD-------DKGIIEYWSPHTLQ--------------------FPESEVSFRLKSD 131 (513)
Q Consensus 83 ~h~----~~V~~l~~sp~~~~l~s~s-------~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~ 131 (513)
.|. ..|..-..+++.++++..+ -.|.+.+|..+... .|...+.|..+..
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 553 4577777788888876433 13566777654321 1111233333311
Q ss_pred --ccccccc-----------------------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 010302 132 --TNLFEIL-----------------------KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 179 (513)
Q Consensus 132 --~~~~~~~-----------------------~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~ 179 (513)
..++.+. ...+-..++..|+.-..+..-+.-|.|++||+.||.++..-
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 1111100 11234567888887777878889999999999999997753
No 336
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.46 E-value=1.6 Score=40.53 Aligned_cols=153 Identities=11% Similarity=0.068 Sum_probs=77.4
Q ss_pred cCCCEEEEEeCC-----CcEEEEEccCCc---eeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-----CCeEEEEecC
Q 010302 5 VDGLLCCSISND-----KSVKIYDVVNYD---MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-----SSFVHIYDAR 71 (513)
Q Consensus 5 ~dg~~las~s~D-----~~v~iwd~~~~~---~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-----d~~I~iwd~~ 71 (513)
.++++++.|+.+ ..+.+||..+.+ ....-.+.........+.. ++. +++.|+. ...+.+||+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCC
Confidence 466777777754 468899998766 4433222211111122222 232 5555543 2358889986
Q ss_pred CCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC-----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 72 ADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
..+.+.+..+........++.+ ++++++.|+.+ ..+.++|+.+.+. .. +..+.........
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-------~~-----~~~~p~~r~~~~~ 202 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW-------TN-----VTPMATKRSGAGV 202 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE-------EE-----ECCCSSCCBSCEE
T ss_pred CCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE-------Ee-----CCCCCcccccceE
Confidence 3333333333222222223333 66677777654 3467777765321 11 1111111111222
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEE
Q 010302 147 IEVSPDGKQFSITSPD-----RRIRVFWFRTGKLRR 177 (513)
Q Consensus 147 v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~~ 177 (513)
+.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 203 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 203 ALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred EEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 333 66777777753 468899998877643
No 337
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.39 E-value=1.7 Score=40.36 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCCEEEEEe-CC-----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC-----CeEEEEecCCCC
Q 010302 6 DGLLCCSIS-ND-----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS-----SFVHIYDARADS 74 (513)
Q Consensus 6 dg~~las~s-~D-----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d-----~~I~iwd~~~~~ 74 (513)
++.+++.|+ .+ ..+.+||..+.+....-.++........+.. ++. +++.|+.+ ..+.+||+....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDR--IYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCE--EEEEcCCCCCccCceEEEEECCCCC
Confidence 456677776 33 4788999987664433222221111122221 222 55555533 458899987333
Q ss_pred ---CcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC-----cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 75 ---NEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 75 ---~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
.+.+..+........++.+ ++++++.|+.++ .+.++|+.+.+. .. +..+........+
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-------~~-----~~~~p~~r~~~~~ 155 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW-------SM-----LGDMQTAREGAGL 155 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE-------EE-----EEECSSCCBSCEE
T ss_pred CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE-------EE-----CCCCCCCcccceE
Confidence 3333222222222233333 566667776432 466777765321 11 1111111111122
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEE
Q 010302 147 IEVSPDGKQFSITSPD-----RRIRVFWFRTGKLRR 177 (513)
Q Consensus 147 v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~~ 177 (513)
+.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 156 ~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 156 VVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred EEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 222 67777777654 457888888876643
No 338
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.17 E-value=0.85 Score=46.15 Aligned_cols=170 Identities=10% Similarity=-0.034 Sum_probs=96.2
Q ss_pred CeEec-CCCEEEEEeCCCcEEEEEcc-------CCce-----------e-EEEEcCCCCCcEEEEEEcCCCcceEEEEeC
Q 010302 1 MQVSV-DGLLCCSISNDKSVKIYDVV-------NYDM-----------M-LMIRLPFIPGAVEWVYKQGDVKAGLAISDR 60 (513)
Q Consensus 1 v~~s~-dg~~las~s~D~~v~iwd~~-------~~~~-----------~-~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~ 60 (513)
++++| ++.++++-..++.|..+|+. ++.. . ....+. .......+++++++.. +.++..
T Consensus 252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~-lYvaD~ 329 (496)
T 3kya_A 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKY-AYFGVI 329 (496)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSE-EEEEET
T ss_pred EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC-CCCCceEEEEcCCCCE-EEEEeC
Confidence 35778 45666666678889999997 5543 1 222322 2234678999999873 566667
Q ss_pred CCCeEEEEecCCCCCcc--eEEeecC---C------------CCeE-EEEEc-------CCCCEEEEEcCCCcEEEecCC
Q 010302 61 NSSFVHIYDARADSNEP--LISKKVH---M------------GPVK-VMRYN-------PVFDTVISADDKGIIEYWSPH 115 (513)
Q Consensus 61 ~d~~I~iwd~~~~~~~~--i~~~~~h---~------------~~V~-~l~~s-------p~~~~l~s~s~dg~i~iwd~~ 115 (513)
..+.|+.++........ ...+.+. . .... .++.. ++++++++=...+.|+.++.
T Consensus 330 ~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~- 408 (496)
T 3kya_A 330 NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP- 408 (496)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-
T ss_pred CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-
Confidence 78899997764212211 1222221 0 1233 45554 46677777777888999874
Q ss_pred CCCCCCcceeeeecCCcc-----c---------cccccCCcceEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEE
Q 010302 116 TLQFPESEVSFRLKSDTN-----L---------FEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRV 178 (513)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~v~~v~~spd-g~~l~s~s~D~~I~iwd~~tg~~~~~ 178 (513)
++.+. .+- -.+.. . ......-..+..|+++++ |.+.++=+..+.||.+++....+..-
T Consensus 409 ~G~v~----Tia-G~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 409 EGIVS----TYA-GRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp TCBEE----EEE-ESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred CCCEE----EEe-cccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 32210 000 00000 0 000012235789999997 77666666788999999877665443
No 339
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.81 E-value=0.17 Score=48.12 Aligned_cols=108 Identities=8% Similarity=0.050 Sum_probs=76.6
Q ss_pred ecCCCEEEEEe-------------CCCcEEEEEcc---CCceeEEEEcCCC-----------CCcEEEEEEcCCCcceEE
Q 010302 4 SVDGLLCCSIS-------------NDKSVKIYDVV---NYDMMLMIRLPFI-----------PGAVEWVYKQGDVKAGLA 56 (513)
Q Consensus 4 s~dg~~las~s-------------~D~~v~iwd~~---~~~~~~~~~l~~~-----------~~~v~~v~~s~~~~~~~l 56 (513)
.|+|+++++.. .+..|..||+. +++......+... ...+..+...++++ ..
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aY 151 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SY 151 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC--EE
Confidence 57888877543 16789999999 8888877776422 23588888888888 77
Q ss_pred EEeCCC-CeEEEEecCCCCCcceEEee------cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 57 ISDRNS-SFVHIYDARADSNEPLISKK------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 57 ~s~~~d-~~I~iwd~~~~~~~~i~~~~------~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
++++.. +.|...+.. ++.+..+. ......+.|+++|+++.|+.....+.+..+|+.+
T Consensus 152 Vt~s~~~~~I~rV~pd---G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 152 VAFALGMPAIARVSAD---GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEESSCEEEEECTT---SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeCCCCCCeEEEEeCC---CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 777666 777777663 44333332 1122356899999999998887799999999863
No 340
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=94.76 E-value=0.088 Score=43.95 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=65.5
Q ss_pred CCCCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhhh--c--cccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCcc
Q 010302 355 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCR--N--EYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFED 430 (513)
Q Consensus 355 ~~~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~~--~--~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~ 430 (513)
...+.+.|.-.-..++++|+.+.||+||+.|+++.= . ..|.+-.++.+ | ..++.
T Consensus 27 ~~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E~y~~l-p---------------------~~l~~ 84 (153)
T 2nnz_A 27 GVEMRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYFTT-Q---------------------VAVEK 84 (153)
T ss_dssp SSCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTEEEECC-S---------------------CCCCC
T ss_pred cCCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCcEEEEC-C---------------------CCCCC
Confidence 445778888888899999999999999999998741 1 11222111100 0 11111
Q ss_pred -ccccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCC------CCeEEEEEEcCHHHHHHH
Q 010302 431 -EFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDN------KHTVFGRVIKGMDVVQAI 488 (513)
Q Consensus 431 -e~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~------~~~vfG~V~~G~~~l~~i 488 (513)
|. .-....+|-|+.-..+. .+-|-+++.|...+ .-.+||+|.+|++.|.++
T Consensus 85 ~en--~~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 85 EEN--SKDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp SSC--CBCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred CCC--CcccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 21 11234568888865433 37777888754332 247899999998775544
No 341
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.67 E-value=2.1 Score=39.91 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=74.9
Q ss_pred cCCCEEEEEeCC----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC------CeEEEEecCCCC
Q 010302 5 VDGLLCCSISND----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS------SFVHIYDARADS 74 (513)
Q Consensus 5 ~dg~~las~s~D----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d------~~I~iwd~~~~~ 74 (513)
.++++++.|+.+ ..+.+||..+.+....-.++........+.. ++. +++.|+.+ ..+.+||+....
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 366777777754 6788899988765544333321111222222 233 55555443 458889986222
Q ss_pred CcceEEeecCCCCeEEEEEcCCCCEEEEEcC---------CCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceE
Q 010302 75 NEPLISKKVHMGPVKVMRYNPVFDTVISADD---------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 145 (513)
Q Consensus 75 ~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (513)
.+.+..+........++.+ ++++++.|+. -..+.+||+.+.+. .. +..+........
T Consensus 130 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W-------~~-----~~~~p~~r~~~~ 195 (306)
T 3ii7_A 130 WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-------TE-----LCPMIEARKNHG 195 (306)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEE-------EE-----ECCCSSCCBSCE
T ss_pred eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeE-------EE-----CCCccchhhcce
Confidence 2222222211222222322 5666666653 23467777766421 11 111111111112
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEE
Q 010302 146 AIEVSPDGKQFSITSPD-----RRIRVFWFRTGKLR 176 (513)
Q Consensus 146 ~v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~ 176 (513)
.+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 196 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 196 LVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp EEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred EEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 2233 66777776643 45788888887653
No 342
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.31 E-value=1.8 Score=40.37 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC----CeEEEEecCCCCCc
Q 010302 6 DGLLCCSISND-----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS----SFVHIYDARADSNE 76 (513)
Q Consensus 6 dg~~las~s~D-----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d----~~I~iwd~~~~~~~ 76 (513)
++++++.|+.+ ..+.+||..+.+....-.+.........+.. ++ .++++.|... ..+.+||+.....+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 56677777644 4588899887665444332221111122222 22 3344443222 24778887622222
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCC-------CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEE
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDK-------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV 149 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (513)
.+..+........++.+ +++.++.|+.+ ..+.++|+.+.+. ... ..+.........+.+
T Consensus 138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-------~~~-----~~~p~~r~~~~~~~~ 203 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW-------TYI-----AEMSTRRSGAGVGVL 203 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE-------EEE-----CCCSSCCBSCEEEEE
T ss_pred ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE-------EEC-----CCCccccccccEEEE
Confidence 22222222222222332 56666666542 3467777765321 111 111111111122333
Q ss_pred cCCCCEEEEEeCC-----CcEEEEEcCCCeEEE
Q 010302 150 SPDGKQFSITSPD-----RRIRVFWFRTGKLRR 177 (513)
Q Consensus 150 spdg~~l~s~s~D-----~~I~iwd~~tg~~~~ 177 (513)
+++.++.|+.+ ..+.+||+.+.+...
T Consensus 204 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 234 (302)
T 2xn4_A 204 --NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ 234 (302)
T ss_dssp --TTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred --CCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence 67777777654 468888988877643
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.26 E-value=1.9 Score=41.47 Aligned_cols=102 Identities=10% Similarity=0.014 Sum_probs=60.1
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC----CCCCcEEEEEEcCC---CcceEEE-EeCCCCeEEEEecCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP----FIPGAVEWVYKQGD---VKAGLAI-SDRNSSFVHIYDARA 72 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~----~~~~~v~~v~~s~~---~~~~~l~-s~~~d~~I~iwd~~~ 72 (513)
|+|.|||+++++-...+.|++++..+++......+. ........++++|+ ...+++. +...++.|.-|.+..
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 578999998887655899999987665543332221 22456788999986 2222222 323445565565542
Q ss_pred CC--------CcceE-Eee---cCCCCeEEEEEcCCCCEEEEEc
Q 010302 73 DS--------NEPLI-SKK---VHMGPVKVMRYNPVFDTVISAD 104 (513)
Q Consensus 73 ~~--------~~~i~-~~~---~h~~~V~~l~~sp~~~~l~s~s 104 (513)
.. .+.+. .+. .| .-..|+|.|+|.+.++.+
T Consensus 117 ~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 117 KKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp TSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECB
T ss_pred CCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEEC
Confidence 11 11111 122 23 235799999998888755
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.22 E-value=2 Score=40.24 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=73.3
Q ss_pred CCCEEEEEeC----C-----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC-----CeEEEEecC
Q 010302 6 DGLLCCSISN----D-----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS-----SFVHIYDAR 71 (513)
Q Consensus 6 dg~~las~s~----D-----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d-----~~I~iwd~~ 71 (513)
++++++.|+. + ..+.+||..+.+....-.+.........+.. ++. +++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGH--IYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTE--EEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCE--EEEEcCCCCCcccccEEEECCC
Confidence 5666666664 2 4688889887654333222211111122222 233 44544422 357888886
Q ss_pred CCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC-----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 72 ADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
....+.+..+........++.+ ++++++.|+.+ ..+.++|+.+.+ |... ..+........+
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~-----~~~p~~r~~~~~ 211 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMI-----TAMNTIRSGAGV 211 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEEC-----CCCSSCCBSCEE
T ss_pred CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeC-----CCCCCccccceE
Confidence 3222222222222222233333 56666777654 347777776532 1111 111111111222
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEE
Q 010302 147 IEVSPDGKQFSITSPD-----RRIRVFWFRTGKLR 176 (513)
Q Consensus 147 v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~ 176 (513)
+.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 212 ~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 212 CVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 333 67777777654 56888898887654
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.17 E-value=2.2 Score=42.69 Aligned_cols=105 Identities=7% Similarity=-0.026 Sum_probs=59.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC------CCCcEEEEEEcCC---CcceEEEEeC------C----
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF------IPGAVEWVYKQGD---VKAGLAISDR------N---- 61 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~------~~~~v~~v~~s~~---~~~~~l~s~~------~---- 61 (513)
|+|.|||+++++-...+.|++++..+++......+.. .......++++|+ ...+++.... .
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~ 111 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELP 111 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSC
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccc
Confidence 5788999988865444578888766555444433331 2456778999985 4433333321 0
Q ss_pred -CCeEEEEecCCCCC-----cceEE-ee-cCCCCeEEEEEcCCCCEEEEEcC
Q 010302 62 -SSFVHIYDARADSN-----EPLIS-KK-VHMGPVKVMRYNPVFDTVISADD 105 (513)
Q Consensus 62 -d~~I~iwd~~~~~~-----~~i~~-~~-~h~~~V~~l~~sp~~~~l~s~s~ 105 (513)
...|.-|+...... +.+.. +. ........|+|.|+|.+.++.+.
T Consensus 112 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 112 NQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 12455555431111 11211 22 11124688999999998877653
No 346
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.81 E-value=1.4 Score=42.39 Aligned_cols=100 Identities=5% Similarity=-0.012 Sum_probs=57.4
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC---CCCCcEEEEEEcCC---CcceEEEEeCCC-----CeEEEEe
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP---FIPGAVEWVYKQGD---VKAGLAISDRNS-----SFVHIYD 69 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~---~~~~~v~~v~~s~~---~~~~~l~s~~~d-----~~I~iwd 69 (513)
|+|.|||+++++ ..++.|++++ +++......+. ........++++|+ +.. +.++.... ..|..|+
T Consensus 36 ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 36 LAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCccEEEEEE
Confidence 578999997665 5669999998 44433222222 12356889999987 443 33333322 5677777
Q ss_pred cCCCC---CcceE-Eeec---CCCCeEEEEEcCCCCEEEEEc
Q 010302 70 ARADS---NEPLI-SKKV---HMGPVKVMRYNPVFDTVISAD 104 (513)
Q Consensus 70 ~~~~~---~~~i~-~~~~---h~~~V~~l~~sp~~~~l~s~s 104 (513)
..... .+.+. .+.. .......++|.|+|.+.++.+
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 75110 11111 1321 111235899999998777654
No 347
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=93.50 E-value=0.78 Score=38.64 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=66.8
Q ss_pred CCCCEEEEEeCCeE--EEEEeCCCCChHHHHHHHHhhh--c----cccCCceEEEeEeCcEEEeccCCCCCCCCcccCCC
Q 010302 355 SLPDNVILHTTMGD--IHMKLYPEECPKTVENFTTHCR--N----EYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGR 426 (513)
Q Consensus 355 ~~~~~v~~~t~~G~--i~i~l~~~~~P~~~~~f~~l~~--~----~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~ 426 (513)
.+++.+.+.-..+. ++.+|..+.||+||+.|.++-= + ..|.|-.++--++.|-. .
T Consensus 19 ~~~r~i~itl~~~g~~~~A~Lldd~APkTcaA~~~~LP~~~~viHarwSGeeVy~~lp~f~~-----------------~ 81 (188)
T 3kop_A 19 GMARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAP-----------------K 81 (188)
T ss_dssp -CCCEEEEEETTTTEEEEEEECTTTSHHHHHHHHHHCCEEEECEECSSSSSEEEEEEECCSS-----------------S
T ss_pred ccceEEEEEEecCCeEEEEEEccccChHHHHHHHHhCCCCcceEEEEEecceEEEECCcccc-----------------c
Confidence 34567777766553 7889999999999999999741 1 12555555444443311 1
Q ss_pred CCccccccCCCCCCceEEEEecc----------C--------CCCCCceEEEEecCCCC-CCCC-----CeEEEEEEcCH
Q 010302 427 EFEDEFHKSLRHDRPFTVSMANA----------G--------PNTNGSQFFITTVATPW-LDNK-----HTVFGRVIKGM 482 (513)
Q Consensus 427 ~~~~e~~~~~~~~~~g~v~~~~~----------~--------~~~~~s~f~i~~~~~~~-ld~~-----~~vfG~V~~G~ 482 (513)
..+.|. .-.+..+|-|++-.. | ......++.|-.+.+.. +.++ -.+|++|++|+
T Consensus 82 ~~g~EN--~T~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~TIveGl 159 (188)
T 3kop_A 82 EPGAEN--TTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGL 159 (188)
T ss_dssp CCCSCS--EESSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEEEEESH
T ss_pred CCCcCC--CCCCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEEEecCH
Confidence 112232 122445677666311 1 01112467776766543 2322 36899999999
Q ss_pred HHHHHHh
Q 010302 483 DVVQAIE 489 (513)
Q Consensus 483 ~~l~~i~ 489 (513)
|-|.++-
T Consensus 160 e~la~~c 166 (188)
T 3kop_A 160 DEMAAAC 166 (188)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9886653
No 348
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.45 E-value=4.8 Score=37.61 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=72.5
Q ss_pred cCCCEEEEEeC----C-------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC--------CCeE
Q 010302 5 VDGLLCCSISN----D-------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN--------SSFV 65 (513)
Q Consensus 5 ~dg~~las~s~----D-------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~--------d~~I 65 (513)
.++++++.|+. + ..+.+||..+.+....-.++........+.. + .. +++.|+. -..+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~-lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--L-NS-IYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--T-TE-EEEECCEESSTTCCBCCCE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--C-CE-EEEEeCCcCCCCCcccceE
Confidence 46778888873 1 1267888887664332222111111111111 2 22 4444442 2457
Q ss_pred EEEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcC-C-----CcEEEecCCCCCCCCcceeeeecCCcccccccc
Q 010302 66 HIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD-K-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 139 (513)
Q Consensus 66 ~iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (513)
.+||+.....+.+..+........++. -++++++.|+. + ..+.++|+.+.+ |.. +..+..
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~-----~~~~p~ 185 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-------WKE-----LAPMQT 185 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE-------EEE-----CCCCSS
T ss_pred EEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe-------EEE-----CCCCCC
Confidence 888886322222222222222222222 35666677765 2 357777776632 211 111111
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCeEEE
Q 010302 140 SKTTVSAIEVSPDGKQFSITSPDR-----RIRVFWFRTGKLRR 177 (513)
Q Consensus 140 ~~~~v~~v~~spdg~~l~s~s~D~-----~I~iwd~~tg~~~~ 177 (513)
......++.+ +++.++.|+.++ .+.+||+.+.+...
T Consensus 186 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 186 ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 1111122333 677777777543 47788888876643
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.35 E-value=5.3 Score=37.45 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=55.5
Q ss_pred EecCCCEEEEEeCC--------------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEe--CCCCeEE
Q 010302 3 VSVDGLLCCSISND--------------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISD--RNSSFVH 66 (513)
Q Consensus 3 ~s~dg~~las~s~D--------------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~--~~d~~I~ 66 (513)
++++|++|.-+... ..|+..++...+...... .... .++++++.++.+.. ..+..|.
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-----~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-----DPCI--YASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-----SCEE--EEEEETTEEEEEEESSSSCEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-----CCcc--EEEEeCCEEEEEeecCCCCceEE
Confidence 67889888887643 356666776554333222 1122 45556665444331 3444555
Q ss_pred EEecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcC-CCcEEEecCCC
Q 010302 67 IYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHT 116 (513)
Q Consensus 67 iwd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~-dg~i~iwd~~~ 116 (513)
.-++. +.....+..+.. ..|+|+++.|.-.+. ...|...++..
T Consensus 133 ~~~~d---Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 133 RIRID---GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEETT---SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEECC---CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 55653 334445544432 456788888875554 56677766644
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.34 E-value=1.9 Score=48.89 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=68.3
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 82 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~ 82 (513)
.+|..+.||-=. ..++.|||+++...+....++ ..|..-.|..... +-+++. ..|..|++. ++..|+..+.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---e~VvfWkWis~~~-l~lVT~---~aVyHW~~~-~~s~P~k~fd 143 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNT-VALVTD---NAVYHWSME-GESQPVKMFD 143 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccC---CCceEEEecCCCe-eEEEcC---CeEEEeccC-CCCccHHHHh
Confidence 356677666554 789999999877666555543 3455556654433 244443 369999996 3556766666
Q ss_pred cC----CCCeEEEEEcCCCCEEEEEc-------CCCcEEEecCCC
Q 010302 83 VH----MGPVKVMRYNPVFDTVISAD-------DKGIIEYWSPHT 116 (513)
Q Consensus 83 ~h----~~~V~~l~~sp~~~~l~s~s-------~dg~i~iwd~~~ 116 (513)
.| ...|..-..+++.++++..+ -.|.+.+++.+.
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 55 45677777888888886433 346777776644
No 351
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.16 E-value=2.7 Score=41.36 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=69.8
Q ss_pred CCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecC----CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCC-CCCc-
Q 010302 49 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH----MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ-FPES- 122 (513)
Q Consensus 49 ~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h----~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~- 122 (513)
.++..++++. ++.|+.-++. ....-+.+... -..|..+..||+|++|+..+. ..|.|..+.... .+..
T Consensus 30 ~n~t~i~~a~---~n~iR~~~i~--~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 30 QNGTRIVFIQ---DNIIRWYNVL--TDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp TTTTEEEEEE---TTEEEEEETT--TCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred cCCCEEEEEE---CCEEEEEECC--CCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc
Confidence 4444433333 3568887875 23334444422 225788999999999988864 478888776321 1111
Q ss_pred -----ceeeeecCCccccccccCCcceEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 010302 123 -----EVSFRLKSDTNLFEILKSKTTVSAIEVSPD---GKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 123 -----~~~~~~~~~~~~~~~~~~~~~v~~v~~spd---g~~l~s~s~D~~I~iwd~~t 172 (513)
...+.+..+.. ......+|..+.|||- +..|++-..|++||+||+..
T Consensus 104 ~~~~~~q~~ty~l~~~---~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEE---EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGC---C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCc---ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 00011111110 0113577999999994 45888889999999999976
No 352
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.13 E-value=5.4 Score=36.98 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=73.9
Q ss_pred CCEEEEEeC--CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC----CeEEEEecCCCCCcceEE
Q 010302 7 GLLCCSISN--DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS----SFVHIYDARADSNEPLIS 80 (513)
Q Consensus 7 g~~las~s~--D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d----~~I~iwd~~~~~~~~i~~ 80 (513)
+.+++.|+. ...+.+||..+.+....-.++........+.. ++. +++.|+.+ ..+.+||+.......+..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 445666664 46789999988765433222211111222222 222 55555533 568888986332333322
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCC------CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCC
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDK------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 154 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 154 (513)
+........++.+ ++++++.|+.+ ..+.+||+.+.+. .. +..+.........+.+ +++
T Consensus 88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-------~~-----~~~~p~~r~~~~~~~~--~~~ 151 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW-------HT-----KPSMLTQRCSHGMVEA--NGL 151 (306)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE-------EE-----ECCCSSCCBSCEEEEE--TTE
T ss_pred CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce-------Ee-----CCCCcCCcceeEEEEE--CCE
Confidence 2222222223333 66677777654 3477777766321 11 1111111111122222 666
Q ss_pred EEEEEeC---------CCcEEEEEcCCCeEEE
Q 010302 155 QFSITSP---------DRRIRVFWFRTGKLRR 177 (513)
Q Consensus 155 ~l~s~s~---------D~~I~iwd~~tg~~~~ 177 (513)
.++.|+. -..+.+||+.+.+...
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~ 183 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTEEEE
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCeEEE
Confidence 6666653 3457888888876543
No 353
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.13 E-value=2 Score=41.48 Aligned_cols=100 Identities=7% Similarity=-0.066 Sum_probs=56.5
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC---CCCCcEEEEEEcCC---CcceEEEEeC---CC----CeEEE
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP---FIPGAVEWVYKQGD---VKAGLAISDR---NS----SFVHI 67 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~---~~~~~v~~v~~s~~---~~~~~l~s~~---~d----~~I~i 67 (513)
|+|.|||+++++ ..++.|+++| .+++ .....+. ........++++|+ +.. +.++.. .+ ..|..
T Consensus 34 ia~~pdG~l~V~-e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 34 IAPLGGGRYLVT-ERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEETTEEEEE-ETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCcceEEEE
Confidence 578999986665 5669999997 4454 2222221 12356888999987 333 333332 23 56777
Q ss_pred EecCCCC-----Ccce-EEeec-CCCCeEEEEEcCCCCEEEEEc
Q 010302 68 YDARADS-----NEPL-ISKKV-HMGPVKVMRYNPVFDTVISAD 104 (513)
Q Consensus 68 wd~~~~~-----~~~i-~~~~~-h~~~V~~l~~sp~~~~l~s~s 104 (513)
|+..... .+.+ ..+.. .......++|.|+|.++++.+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 7764211 1111 11221 111235799999998777754
No 354
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.02 E-value=9.8 Score=39.65 Aligned_cols=124 Identities=7% Similarity=-0.088 Sum_probs=70.9
Q ss_pred CCcEEEEEccCCceeEEEEcCC-CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEeecCCCCeEEEEEc
Q 010302 16 DKSVKIYDVVNYDMMLMIRLPF-IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN 94 (513)
Q Consensus 16 D~~v~iwd~~~~~~~~~~~l~~-~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~s 94 (513)
.+.|+..++........ .+.. .-.....+.+.+.... ++++....+.|.-+++. .......+.........+++.
T Consensus 325 ~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~-ly~sD~~~~~I~r~~~~--g~~~~~v~~~~~~~p~GlAvD 400 (619)
T 3s94_A 325 RTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGY-IYWTDDEVRAIRRSFID--GSGSQFVVTAQIAHPDGIAVD 400 (619)
T ss_dssp SSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTE-EEEEETTTTEEEEEETT--SCSCEEEECSSCSCCCEEEEE
T ss_pred ccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCe-EEEEeCCCCeEEEEEcC--CCccEEEEECCCCCcCceEEe
Confidence 44677667765433211 1111 1234667788764432 67777778889999885 222222233333456789998
Q ss_pred CCC-CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc-cCCcceEEEEEcCCCCEEEE
Q 010302 95 PVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSI 158 (513)
Q Consensus 95 p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~s 158 (513)
+.+ ++.++-+..+.|.+.++.... ...+. ..-..+.++++.|....|..
T Consensus 401 ~~~~~lY~tD~~~~~I~v~~~~G~~---------------~~~l~~~~l~~P~~iavdp~~G~ly~ 451 (619)
T 3s94_A 401 WVARNLYWTDTGTDRIEVTRLNGTM---------------RKILISEDLEEPRAIVLDPMVGYMYW 451 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS---------------CEEEECTTCCSEEEEEEETTTTEEEE
T ss_pred cccCcEEEEeCCCCcEEEEeCCCCe---------------EEEEEECCCCCeeeEEEEcCCCcEEE
Confidence 754 455565667889888775421 11222 22346889999997444443
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.22 E-value=7.4 Score=36.41 Aligned_cols=141 Identities=5% Similarity=-0.006 Sum_probs=72.4
Q ss_pred EecCCCEEEEEe--CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC------------CCeEEEE
Q 010302 3 VSVDGLLCCSIS--NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN------------SSFVHIY 68 (513)
Q Consensus 3 ~s~dg~~las~s--~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~------------d~~I~iw 68 (513)
|+.+|.+|.-.. .++.|...+........... ..+. .+++++..++.+.-.. ...|+..
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-----~~~~--~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-----DTAM--YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-----EEEE--EEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC-----Ccee--eEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 566777776664 24555555554333222211 1222 3355666444443322 3456666
Q ss_pred ecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEc--CCCc--EEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 69 DARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD--DKGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s--~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
++. ..+ ...+.. .. +..|+++++.|+-.+ .++. |...++.. .....+..+..
T Consensus 94 ~~d--g~~-~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG---------------s~~~~lt~~~~-- 149 (302)
T 3s25_A 94 KRN--GHG-STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG---------------EEKKKIKNHYL-- 149 (302)
T ss_dssp ETT--SCC-CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS---------------CCCEEEESSCC--
T ss_pred eCC--CCc-ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC---------------CCeEEEeCCCc--
Confidence 764 222 233322 12 236788888887655 3444 44444432 22333333322
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEE
Q 010302 145 SAIEVSPDGKQFSITSP-DRRIRVFWFRTGKLR 176 (513)
Q Consensus 145 ~~v~~spdg~~l~s~s~-D~~I~iwd~~tg~~~ 176 (513)
.+|+|+++.|.-.+. ...|..-++..+...
T Consensus 150 --~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 150 --FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp --CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred --eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 456779998886554 567777777665543
No 356
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.06 E-value=3 Score=38.76 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=74.9
Q ss_pred cCCCEEEEEeCCC-----cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC-------CCeEEEEecCC
Q 010302 5 VDGLLCCSISNDK-----SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN-------SSFVHIYDARA 72 (513)
Q Consensus 5 ~dg~~las~s~D~-----~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~-------d~~I~iwd~~~ 72 (513)
.+++.++.|+.++ .+.+||..+.+....-.+.........+.. ++. +++.|+. -..+.+||+..
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGL--LYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE--EEEECCEETTTTEECCCEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCE--EEEEeCCCCCCCccccEEEEEeCCC
Confidence 3677777777543 577888887665443222211111122222 222 4444432 23588899863
Q ss_pred CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCC-----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 73 DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 73 ~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
.....+..+........++.+ ++++++.|+.+ ..+.++|+.+.+. .. +..+.........+
T Consensus 183 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~-----~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 183 NEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-------RQ-----VADMNMCRRNAGVC 248 (302)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE-------EE-----ECCCSSCCBSCEEE
T ss_pred CcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE-------ee-----CCCCCCccccCeEE
Confidence 222222222222222223333 56677777654 3577788766332 11 11111111111222
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEEcCCCeEE
Q 010302 148 EVSPDGKQFSITSPD-----RRIRVFWFRTGKLR 176 (513)
Q Consensus 148 ~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~ 176 (513)
.+ +++.++.|+.+ ..+.+||..+.+..
T Consensus 249 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 249 AV--NGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EE--CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 33 67777777754 34888998887763
No 357
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.04 E-value=8.2 Score=36.41 Aligned_cols=136 Identities=10% Similarity=0.009 Sum_probs=66.6
Q ss_pred eEecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC--CCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceE
Q 010302 2 QVSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP--FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI 79 (513)
Q Consensus 2 ~~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~--~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~ 79 (513)
.|.+++..+| ++.++.| +.....++.=...... .....+..+.+.+ .. ..+.+ .++.|..- .. .++.-.
T Consensus 42 ~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~-~~~~g-~~g~i~~S-~D--gG~tW~ 112 (327)
T 2xbg_A 42 SFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NE-GWIVG-EPPIMLHT-TD--GGQSWS 112 (327)
T ss_dssp EESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TE-EEEEE-ETTEEEEE-SS--TTSSCE
T ss_pred EECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--Ce-EEEEE-CCCeEEEE-CC--CCCCce
Confidence 4555667777 4556655 2233223221222111 1234677788765 22 33333 44544432 21 233222
Q ss_pred Eee---cCCCCeEEEEEcCCCCEEEEEcCCCcE-EEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCE
Q 010302 80 SKK---VHMGPVKVMRYNPVFDTVISADDKGII-EYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 155 (513)
Q Consensus 80 ~~~---~h~~~V~~l~~sp~~~~l~s~s~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 155 (513)
.+. .+...+..+.+.+++..++.+. ++.| +-.|--. .|.. + ...+...+..++++|++++
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~--------tW~~-----~--~~~~~~~~~~~~~~~~~~~ 176 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK--------NWQA-----L--VQEAIGVMRNLNRSPSGEY 176 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTS--------SEEE-----E--ECSCCCCEEEEEECTTSCE
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC--------CCEE-----e--ecCCCcceEEEEEcCCCcE
Confidence 222 2334577888877776666654 5544 3333211 0110 1 1123456889999999988
Q ss_pred EEEEeCC
Q 010302 156 FSITSPD 162 (513)
Q Consensus 156 l~s~s~D 162 (513)
++.+...
T Consensus 177 ~~~g~~G 183 (327)
T 2xbg_A 177 VAVSSRG 183 (327)
T ss_dssp EEEETTS
T ss_pred EEEECCC
Confidence 8766443
No 358
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.40 E-value=2.9 Score=39.11 Aligned_cols=152 Identities=10% Similarity=0.047 Sum_probs=74.8
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCC-----CeEEEEecCCCCC
Q 010302 6 DGLLCCSISND-----KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNS-----SFVHIYDARADSN 75 (513)
Q Consensus 6 dg~~las~s~D-----~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d-----~~I~iwd~~~~~~ 75 (513)
++++++.|+.+ ..+.+||..+.+....-.+.........+.. ++. +++.|+.+ ..+.+||+.....
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL--LYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE--EEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 66677776643 4688889887654433222211111122222 222 55554432 4588888863222
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEcCC-----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 150 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 150 (513)
..+..+........++.+ ++++++.|+.+ ..+.+||+.+.+. .. +..+.........+.+
T Consensus 197 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-------~~-----~~~~p~~r~~~~~~~~- 261 (308)
T 1zgk_A 197 RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW-------TF-----VAPMKHRRSALGITVH- 261 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE-------EE-----CCCCSSCCBSCEEEEE-
T ss_pred eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE-------EE-----CCCCCCCccceEEEEE-
Confidence 222222222222233333 56677777654 4577888866432 11 1111111111222233
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCeEEE
Q 010302 151 PDGKQFSITSPD-----RRIRVFWFRTGKLRR 177 (513)
Q Consensus 151 pdg~~l~s~s~D-----~~I~iwd~~tg~~~~ 177 (513)
+++.++.|+.+ ..+.+||..+.+...
T Consensus 262 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 262 -QGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp -TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred -CCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 67777777743 457888888877643
No 359
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.06 E-value=8.7 Score=35.84 Aligned_cols=153 Identities=10% Similarity=0.030 Sum_probs=68.4
Q ss_pred cCCCEEEEEeC----CC-------cEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC--C----CeEEE
Q 010302 5 VDGLLCCSISN----DK-------SVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN--S----SFVHI 67 (513)
Q Consensus 5 ~dg~~las~s~----D~-------~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~--d----~~I~i 67 (513)
.++++++.|+. ++ .+.+||..+.+....-.++........+.. + ..++++.|.. . ..+.+
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--D-DKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--T-TEEEEEEEEBTTTCCEEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--C-CEEEEEcCccCCCCcccceEEE
Confidence 46777888873 11 167788877655333222211111112222 2 2334444432 1 34778
Q ss_pred EecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcC------CCcEEEecCCCCCCCCcceeeeecCCccccccccCC
Q 010302 68 YDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD------KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 141 (513)
Q Consensus 68 wd~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (513)
||+.....+.+..+........++. .++++++.|+. -..+.++|+.+.+ |... ..+....
T Consensus 132 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~-----~~~p~~r 197 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDL-----APMKTPR 197 (318)
T ss_dssp EETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE-------EEEE-----CCCSSCC
T ss_pred EeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE-------EEEC-----CCCCCCc
Confidence 8876222222211111111112222 36666676663 2347778876632 1111 1111111
Q ss_pred cceEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEE
Q 010302 142 TTVSAIEVSPDGKQFSITSPD-----RRIRVFWFRTGKLR 176 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s~s~D-----~~I~iwd~~tg~~~ 176 (513)
....++.+ +++.++.|+.+ ..+.+||+.+.+..
T Consensus 198 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 198 SMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp BSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 11122233 67777777643 34667787776653
No 360
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.20 E-value=11 Score=39.84 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=77.9
Q ss_pred cCCCEEEEEeCC----CcEEEEEccCCceeEEE-EcC----CCCCcEEEEEEcC-CCcceEEEEeCCC------CeEEEE
Q 010302 5 VDGLLCCSISND----KSVKIYDVVNYDMMLMI-RLP----FIPGAVEWVYKQG-DVKAGLAISDRNS------SFVHIY 68 (513)
Q Consensus 5 ~dg~~las~s~D----~~v~iwd~~~~~~~~~~-~l~----~~~~~v~~v~~s~-~~~~~~l~s~~~d------~~I~iw 68 (513)
.++..++.||.+ ..+.+||..+.+....- .++ ..+.....+.... ++. +++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ--LLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE--EEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE--EEEEcCCCCCCCccccEEEE
Confidence 466777777753 46888998877654443 210 1111112222222 333 55554432 347888
Q ss_pred ecCCCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC--cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 69 DARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 69 d~~~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
|+.....+.+..+........ ++.-.++++++.|+.++ .+.+||+.+.+ |..-... ...........+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-------W~~~~~~--g~~p~~r~~~~a 543 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTEEI-------FKDVTPK--DEFFQNSLVSAG 543 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTTTE-------EEECCCS--SGGGGSCCBSCE
T ss_pred eCCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCCCc-------eEEccCC--CCCCCcccceeE
Confidence 886322332222222222222 22223778888887654 68888887643 2211110 001111111233
Q ss_pred EEEcCC-CCEEEEEeC--C-----CcEEEEEcCCCe
Q 010302 147 IEVSPD-GKQFSITSP--D-----RRIRVFWFRTGK 174 (513)
Q Consensus 147 v~~spd-g~~l~s~s~--D-----~~I~iwd~~tg~ 174 (513)
+.+..+ ++.++.|+. + ..+.+||+.+.+
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 555555 667777764 2 357888888766
No 361
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=89.86 E-value=13 Score=34.94 Aligned_cols=109 Identities=14% Similarity=0.231 Sum_probs=59.7
Q ss_pred CCcEEEEEEcCCCcceEEEEeCCCCeE-EEEecCCCCCcceEEe-ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCC
Q 010302 39 PGAVEWVYKQGDVKAGLAISDRNSSFV-HIYDARADSNEPLISK-KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 116 (513)
Q Consensus 39 ~~~v~~v~~s~~~~~~~l~s~~~d~~I-~iwd~~~~~~~~i~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 116 (513)
+..+..+.+.+++. +++.+. ++.| +-.| .++.-... ..+...+.++++.|++.+++.+...+..+-+|-.-
T Consensus 121 ~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~D----gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG 193 (327)
T 2xbg_A 121 PGSPRLIKALGNGS--AEMITN-VGAIYRTKD----SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQ 193 (327)
T ss_dssp SSCEEEEEEEETTE--EEEEET-TCCEEEESS----TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTC
T ss_pred CCCeEEEEEECCCC--EEEEeC-CccEEEEcC----CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCC
Confidence 34556666655444 455544 4443 2222 22222222 24556789999999988887776554444444311
Q ss_pred CCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010302 117 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 169 (513)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd 169 (513)
.. | +.+. ......+..++++++++.++. +.+|.+++.+
T Consensus 194 ~t-------W-----~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~ 231 (327)
T 2xbg_A 194 TA-------W-----EPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSD 231 (327)
T ss_dssp SS-------C-----EEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred Cc-------e-----eECC--CCCCCccceeEECCCCCEEEE-eCCceEEEec
Confidence 00 0 1111 123456788999999987654 4577776653
No 362
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.75 E-value=30 Score=38.95 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCEEEEEeC-CCcEEEEEccCCceeEEEEcCC--CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecC
Q 010302 7 GLLCCSISN-DKSVKIYDVVNYDMMLMIRLPF--IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDAR 71 (513)
Q Consensus 7 g~~las~s~-D~~v~iwd~~~~~~~~~~~l~~--~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~ 71 (513)
++++|.|.. |++|+|+++.+.+.+....+.. .+..+.-+.+ +...++..|-.||.+.-+.+.
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~---~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF---ESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE---TTEEEEEEEETTSEEEEEEEC
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe---CCCcEEEEEeCCCeEEEEEEc
Confidence 478999996 9999999999877776666643 2333443443 233477788888988666554
No 363
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=89.71 E-value=3.8 Score=38.34 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=73.9
Q ss_pred CCCEEEEEeCC--------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC------CCeEEEEecC
Q 010302 6 DGLLCCSISND--------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN------SSFVHIYDAR 71 (513)
Q Consensus 6 dg~~las~s~D--------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~------d~~I~iwd~~ 71 (513)
++++++.|+.+ ..+.+||..+.+....-.++........+. .++. +++.|+. -..+.+||+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDL--VYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTE--EEEECCBCTTSCBCCCEEEEETT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCE--EEEEeCCCCCCcccceEEEEeCC
Confidence 56666767632 468889998765433322221111111222 1222 4444443 2458888886
Q ss_pred CCCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC-----cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 72 ADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 72 ~~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
....+.+..+........++.+ ++++++.|+.++ .+.++|+.+.+ |.. +..+.........
T Consensus 174 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~-----~~~~p~~r~~~~~ 239 (315)
T 4asc_A 174 KFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-------WAP-----FEAFPQERSSLSL 239 (315)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-------EEE-----ECCCSSCCBSCEE
T ss_pred CCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-------EEE-----CCCCCCcccceeE
Confidence 3222222222222222223333 666777777544 36677876632 111 1111111111222
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEEcCCCeEEEE
Q 010302 147 IEVSPDGKQFSITSPD--------------RRIRVFWFRTGKLRRV 178 (513)
Q Consensus 147 v~~spdg~~l~s~s~D--------------~~I~iwd~~tg~~~~~ 178 (513)
+.+ +++.++.|+.+ ..+.+||+.+.+....
T Consensus 240 ~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 240 VSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 333 66777777753 2367888888776543
No 364
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.67 E-value=5.3 Score=38.04 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=17.4
Q ss_pred CCCEEEEEeC-C---------CcEEEEEccCCceeE
Q 010302 6 DGLLCCSISN-D---------KSVKIYDVVNYDMML 31 (513)
Q Consensus 6 dg~~las~s~-D---------~~v~iwd~~~~~~~~ 31 (513)
++++++.|+. + ..+.+||..+.+...
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~ 100 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK 100 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEE
Confidence 5666776765 2 468889988765443
No 365
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.64 E-value=4.9 Score=37.64 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=73.9
Q ss_pred CCCEEEEEeCC-------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCC------CCeEEEEecCC
Q 010302 6 DGLLCCSISND-------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRN------SSFVHIYDARA 72 (513)
Q Consensus 6 dg~~las~s~D-------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~------d~~I~iwd~~~ 72 (513)
++++++.|+.+ ..+.+||..+.+....-.++........+. .++. +++.|+. -..+.+||+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGM--IYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTE--EEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCE--EEEEcCCCCCCCccceEEEEcCCC
Confidence 56777777753 357788888766544322221111111111 2222 4444442 23588899863
Q ss_pred CCCcceEEeecCCCCeEEEEEcCCCCEEEEEcCCC-----cEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEE
Q 010302 73 DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAI 147 (513)
Q Consensus 73 ~~~~~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (513)
...+.+..+........++.+ ++++++.|+.++ .+.+||+.+.+. .. +..+.........+
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~-----~~~~p~~r~~~~~~ 250 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW-------EV-----MTEFPQERSSISLV 250 (318)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE-------EE-----CCCCSSCCBSCEEE
T ss_pred CEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE-------EE-----CCCCCCcccceEEE
Confidence 222222222211222223333 566777776432 356778766432 11 11111111111223
Q ss_pred EEcCCCCEEEEEeCC--------------CcEEEEEcCCCeEEEE
Q 010302 148 EVSPDGKQFSITSPD--------------RRIRVFWFRTGKLRRV 178 (513)
Q Consensus 148 ~~spdg~~l~s~s~D--------------~~I~iwd~~tg~~~~~ 178 (513)
.+ +++.++.|+.+ ..+.+||+.+.+....
T Consensus 251 ~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 251 SL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 33 66777776643 4578889888877554
No 366
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.33 E-value=3.8 Score=39.40 Aligned_cols=102 Identities=8% Similarity=-0.033 Sum_probs=53.4
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEccCCceeEEE-Ec----CCCCCcEEEEEEcCC---CcceEEEEeCC-------CCe
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDVVNYDMMLMI-RL----PFIPGAVEWVYKQGD---VKAGLAISDRN-------SSF 64 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~~~~~~~~~~-~l----~~~~~~v~~v~~s~~---~~~~~l~s~~~-------d~~ 64 (513)
|+|.|||+ +++ +...+.|++++.. ++....+ .+ .........++++|+ ... +.++-.. ...
T Consensus 23 i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~~~~ 99 (353)
T 2g8s_A 23 LAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKAGTA 99 (353)
T ss_dssp EEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCEEEE
T ss_pred EEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCceeE
Confidence 57899999 665 4567899999853 3321111 01 112345788999986 333 3333222 234
Q ss_pred EEEEecCCCCCcc--eEE-eec------CCCCeEEEEEcCCCCEEEEEcC
Q 010302 65 VHIYDARADSNEP--LIS-KKV------HMGPVKVMRYNPVFDTVISADD 105 (513)
Q Consensus 65 I~iwd~~~~~~~~--i~~-~~~------h~~~V~~l~~sp~~~~l~s~s~ 105 (513)
|..|++....... ... +.. ....-..|+|.|+|.+.++.+.
T Consensus 100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 6556654211111 111 111 0111357999999976666543
No 367
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=88.04 E-value=18 Score=34.55 Aligned_cols=60 Identities=20% Similarity=0.098 Sum_probs=39.9
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc----ccccCCcceEEEEEcCC
Q 010302 81 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF----EILKSKTTVSAIEVSPD 152 (513)
Q Consensus 81 ~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~spd 152 (513)
+...-...+.|+|.|+|.++++--..|.|++++..+++. +.+. ...........|+++|+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~------------~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK------------TELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------------EEEEECTTCCCBTTBSEEEEEECTT
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE------------eeecccCceeecCCCCceeeEeccc
Confidence 333445668999999999888776689999987654321 1111 11223456889999996
No 368
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.53 E-value=17 Score=32.29 Aligned_cols=103 Identities=8% Similarity=-0.107 Sum_probs=56.7
Q ss_pred CeEecCCCEEEEEeCCCcEEEEEccCCce------eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCC
Q 010302 1 MQVSVDGLLCCSISNDKSVKIYDVVNYDM------MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS 74 (513)
Q Consensus 1 v~~s~dg~~las~s~D~~v~iwd~~~~~~------~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~ 74 (513)
++|+|||.+.|. .++.+.-.+..+.+. -..+--.+- ..-..+.|.+++. +.++ .|+.|.-++.....
T Consensus 46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~--LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGY--LYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSC--EEEE--ETTEEEEESCCCST
T ss_pred EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc-ccceEEEECCCCC--EEEe--CCCEEEEeCCCcCC
Confidence 579999998777 566655555433111 011100000 1125677777776 6666 45888777653111
Q ss_pred C-cce---EEe-ecCCCCeEEEEEcCCCCEEEEEcCCCcEEEe
Q 010302 75 N-EPL---ISK-KVHMGPVKVMRYNPVFDTVISADDKGIIEYW 112 (513)
Q Consensus 75 ~-~~i---~~~-~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw 112 (513)
. ..+ ..+ ...=..+..|.+.|+|.+.+.. |+.+.-+
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 1 110 111 1111467999999999988777 6665434
No 369
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=85.74 E-value=6.9 Score=37.24 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=17.6
Q ss_pred CCCCEEEEEeCCC------cEEEEEcCCCeEEEE
Q 010302 151 PDGKQFSITSPDR------RIRVFWFRTGKLRRV 178 (513)
Q Consensus 151 pdg~~l~s~s~D~------~I~iwd~~tg~~~~~ 178 (513)
.+++.++.|+.++ .+.++++++++.+..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 3778888888542 355568888776554
No 370
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=85.41 E-value=18 Score=34.54 Aligned_cols=72 Identities=7% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccc---ccccCCcceEEEEEcCC---CCEE-EE
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF---EILKSKTTVSAIEVSPD---GKQF-SI 158 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~spd---g~~l-~s 158 (513)
..-..++|.|+|+++++ ..++.|.+++ +++. +.+. ...........|+|+|+ +..| ++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~------------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL------------STYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE------------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc------------cEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 44679999999996655 4568898887 2210 1111 11122356889999998 4444 44
Q ss_pred EeCC-----CcEEEEEcCC
Q 010302 159 TSPD-----RRIRVFWFRT 172 (513)
Q Consensus 159 ~s~D-----~~I~iwd~~t 172 (513)
-+.. +.|..|+...
T Consensus 96 ~~~~~~~~~~~v~r~~~~~ 114 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLG 114 (352)
T ss_dssp EEECTTSSEEEEEEEEECS
T ss_pred EecCCCCCccEEEEEEeCC
Confidence 3322 5566666554
No 371
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=84.30 E-value=5.5 Score=32.22 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=62.3
Q ss_pred CCEEEEEeCCeEEEEEeCCCCChHHHHHHHHhh----hccccCCceEEEeEeCcEEEeccCCCCCCCCcccCCCCCcc-c
Q 010302 357 PDNVILHTTMGDIHMKLYPEECPKTVENFTTHC----RNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFED-E 431 (513)
Q Consensus 357 ~~~v~~~t~~G~i~i~l~~~~~P~~~~~f~~l~----~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~-e 431 (513)
.+.|.+-.....+..+|+.+ |.|++.|.+.. +-..|. .-++--.|.. ++. |
T Consensus 12 ~~~~~~~~~~~~v~a~L~Dn--p~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~---------------------l~~~e 67 (136)
T 1zx8_A 12 HMRVELLFESGKCVIDLNEE--YEVVKLLKEKIPFESVVNTWG-EEIYFSTPVN---------------------VQKME 67 (136)
T ss_dssp EEEEEEECSSCEEEEEEETT--SHHHHHHHHHCSEEEECEESS-SEEEEECSCC---------------------CCCCS
T ss_pred eeEEEEeeCCcEEEEEEcCC--HHHHHHHHHHCCcEEEHHHhC-CcEEEECCcc---------------------CCCCC
Confidence 46777888888999999755 88999998874 222343 2222222211 110 1
Q ss_pred cccCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCCC------CCeEEEEEEcCHHHHHHH
Q 010302 432 FHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDN------KHTVFGRVIKGMDVVQAI 488 (513)
Q Consensus 432 ~~~~~~~~~~g~v~~~~~~~~~~~s~f~i~~~~~~~ld~------~~~vfG~V~~G~~~l~~i 488 (513)
. ... -..+|-|+.-..+. -|-|-+++.|...+ .-.+||||.+|++.+.++
T Consensus 68 ~-~~~-~~~~GDIaYw~pgg-----~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 68 N-PRE-VVEIGDVGYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp S-EES-SBCTTEEEEEGGGT-----EEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred C-CCc-cCCCCcEEEeCCCC-----EEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 1 111 13558888866544 37777888764443 358999999997775443
No 372
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=84.03 E-value=20 Score=34.04 Aligned_cols=108 Identities=8% Similarity=0.011 Sum_probs=62.2
Q ss_pred CEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEc--CCCcceEEEEe-CCCCeEEEEecCCCCCcceEEee--
Q 010302 8 LLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQ--GDVKAGLAISD-RNSSFVHIYDARADSNEPLISKK-- 82 (513)
Q Consensus 8 ~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s--~~~~~~~l~s~-~~d~~I~iwd~~~~~~~~i~~~~-- 82 (513)
.+++.++.||.|.-+|..+|+.+-.+... ...+....... +... ..++.. ..||.+..++.. ++.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~-~~~vv~p~~dG~l~a~~~~--~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETY-ETLIIEPFGDGNIYYFNAH--QGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSS-EEEEECCSTTTEEEEEETT--TEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCC-cEEEEEECCCCEEEEEECC--CCcEEeeeccc
Confidence 36777899999999999999988887654 11122111100 1111 244443 689999999986 554433332
Q ss_pred --cCCCCeEE---EEE-c----CCCCEEEEEcCCCcEEEecCCCCCC
Q 010302 83 --VHMGPVKV---MRY-N----PVFDTVISADDKGIIEYWSPHTLQF 119 (513)
Q Consensus 83 --~h~~~V~~---l~~-s----p~~~~l~s~s~dg~i~iwd~~~~~~ 119 (513)
...+++.. ... . ..+..+++++.++.+...|+++++.
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 12223321 000 0 1345677888888888777777653
No 373
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.45 E-value=21 Score=35.49 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccc------cCCcceEEEEEcCC
Q 010302 85 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL------KSKTTVSAIEVSPD 152 (513)
Q Consensus 85 ~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~v~~spd 152 (513)
-...++|+|.|+|+++++-...+.|.+++..++.. +.+..+. ........|+|+||
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~------------~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV------------KTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------------EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE------------eEEecCCccccccCCCCceeEEEECCC
Confidence 34567999999999887765555788887644321 1111111 12355789999995
No 374
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=82.85 E-value=24 Score=33.63 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCC
Q 010302 86 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 152 (513)
Q Consensus 86 ~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 152 (513)
.....++|.|+|+++++ ..++.|++++. +++ .. ... +............|+++|+
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~--~~~------~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KL--VAS------FDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EE--EEE------CCCCCSTTCSEEEEEECTT
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eE--eec------cceeecCCCceeeEEeCCC
Confidence 45689999999986555 45688988863 211 00 000 0011122345889999997
No 375
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=81.28 E-value=10 Score=40.17 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=79.3
Q ss_pred CCCEEEEEeCC------CcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCC--eEEEEecCCCCCcc
Q 010302 6 DGLLCCSISND------KSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSS--FVHIYDARADSNEP 77 (513)
Q Consensus 6 dg~~las~s~D------~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~--~I~iwd~~~~~~~~ 77 (513)
+|++++.||.+ ..+.+||..+.+....-.+.. +..-.......++. +++.|+.++ .+.+||+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~--iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGN--VLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSC--EEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCE--EEEECCCCCCCCEEEEECCCCceEE
Confidence 67777777743 357888988765433322221 11111222212333 555555433 68899986322222
Q ss_pred eEE---eecCCCCeEEEEEcCC-CCEEEEEcC--C-----CcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEE
Q 010302 78 LIS---KKVHMGPVKVMRYNPV-FDTVISADD--K-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 146 (513)
Q Consensus 78 i~~---~~~h~~~V~~l~~sp~-~~~l~s~s~--d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 146 (513)
+.. +........++.+..+ ++.++.|+. + ..+.+||+.+.+. ...+.|..-...+...-..| +
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p~~~R~~~-----~ 601 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHPLFQRYGS-----Q 601 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECGGGCCBSC-----E
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCCCCCcccc-----e
Confidence 221 1112222334556655 666677765 2 3477788776542 11122221111010111111 2
Q ss_pred EEEcCCCCEEEEEeC--------CCcEEEEEcCCCeEE
Q 010302 147 IEVSPDGKQFSITSP--------DRRIRVFWFRTGKLR 176 (513)
Q Consensus 147 v~~spdg~~l~s~s~--------D~~I~iwd~~tg~~~ 176 (513)
++...+++.++.|+. ...+.+||..+.+..
T Consensus 602 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 602 IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 223333777777773 346899999988775
No 376
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.90 E-value=11 Score=38.43 Aligned_cols=101 Identities=10% Similarity=-0.036 Sum_probs=65.0
Q ss_pred CeEecCCCEEEEEe-CCCcEEEEEccCCce-----------eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEE
Q 010302 1 MQVSVDGLLCCSIS-NDKSVKIYDVVNYDM-----------MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIY 68 (513)
Q Consensus 1 v~~s~dg~~las~s-~D~~v~iwd~~~~~~-----------~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iw 68 (513)
+.++|||++++.++ .+.++.++|+++.+. ...-..+ .........|.+++. ...|-.-|.+|.-|
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~--aYTtlfidSqvvkW 404 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGN--AYTTLFIDSQVVKW 404 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSE--EEEEETTTTEEEEE
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCc--eEeeeeecceEEEE
Confidence 46899999998887 488999999974211 0111111 224566778888774 77788889999999
Q ss_pred ecCCC--------CCcceEEeecCCCCeEEEE-----EcCCCCEEEEEc
Q 010302 69 DARAD--------SNEPLISKKVHMGPVKVMR-----YNPVFDTVISAD 104 (513)
Q Consensus 69 d~~~~--------~~~~i~~~~~h~~~V~~l~-----~sp~~~~l~s~s 104 (513)
++... -...+..+..|-.+-.-.+ -.|+|++|++..
T Consensus 405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 98510 1134555665554432221 247899998865
No 377
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=79.79 E-value=53 Score=37.00 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=82.0
Q ss_pred CCEEEEEe----------CCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCc
Q 010302 7 GLLCCSIS----------NDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE 76 (513)
Q Consensus 7 g~~las~s----------~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~ 76 (513)
..+|+.|. ..|.|.+|++..+++....+ ....+.+.+++-.. +. ++++-+ .++++|++. ..+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~g~v~al~~~~-g~--Lla~ig--~~l~vy~l~--~~~ 915 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVKGAVYSMVEFN-GK--LLASIN--STVRLYEWT--TEK 915 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEESSCEEEEEEET-TE--EEEEET--TEEEEEEEC--TTS
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcCCcCEEEeeeC-CE--EEEEcC--CEEEEEECC--CCc
Confidence 46788775 24789999997554433322 22356777776443 22 555443 589999996 333
Q ss_pred ceEEeecCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCcccccccc--CCcceEEEEEcCCCC
Q 010302 77 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGK 154 (513)
Q Consensus 77 ~i~~~~~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~ 154 (513)
.++.-..+-..|..+.....+++++.|+.-..+.++..+ .. ...+..+.. +..+++++.+-.++
T Consensus 916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~------------~~-~~~L~~~a~D~~~~~vta~~~ld~~- 981 (1158)
T 3ei3_A 916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK------------PM-EGNFEEIARDFNPNWMSAVEILDDD- 981 (1158)
T ss_dssp CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEE------------TT-TTEEEEEEECCSCBCEEEEEEEETT-
T ss_pred eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEE------------cC-CCeEEEEEeecccccEEEEEEEccC-
Confidence 333111111123333333367888888877777665221 11 122333332 55678888886554
Q ss_pred EEEEEeCCCcEEEEEcC
Q 010302 155 QFSITSPDRRIRVFWFR 171 (513)
Q Consensus 155 ~l~s~s~D~~I~iwd~~ 171 (513)
.++.+..++.|.+....
T Consensus 982 t~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 982 NFLGAENAFNLFVCQKD 998 (1158)
T ss_dssp EEEEEETTSEEEEEEEC
T ss_pred cEEEEcCCCcEEEEecC
Confidence 66667888998887654
No 378
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.02 E-value=12 Score=33.27 Aligned_cols=104 Identities=9% Similarity=0.024 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcc------eEEee--cCCCCeEEEEEcCCCCEEEEEcCCCcEEEe
Q 010302 41 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEP------LISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYW 112 (513)
Q Consensus 41 ~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~------i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg~i~iw 112 (513)
.+..++|+|++. +.+. .++.+.-.+.. +... -..+- +.. ...++.|.|+|.+.++ .||.|.-+
T Consensus 42 ~~~~laf~P~G~--LYaV--~~G~Ly~~~~~--t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGGE--LYGV--LNDKIYKGTPP--THDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEECTTSC--EEEE--ETTEEEEESCC--CSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred cceeEEECCCcc--EEEE--eCCeEEEECCC--CCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEe
Confidence 566899999776 4333 45555544442 2111 11111 111 1478999999998888 46888878
Q ss_pred cCCCCCCCCcceeeeecCCccccc--cccC--CcceEEEEEcCCCCEEEEEeCCCcEE
Q 010302 113 SPHTLQFPESEVSFRLKSDTNLFE--ILKS--KTTVSAIEVSPDGKQFSITSPDRRIR 166 (513)
Q Consensus 113 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~v~~v~~spdg~~l~s~s~D~~I~ 166 (513)
+..+... ..-+.. ..+. -..+..|.|.|+|.+.+.. |+.+.
T Consensus 113 ~pP~~~~-----------~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 113 SPPQSDT-----------DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp SCCCSTT-----------CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCcCCC-----------CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 7644211 111111 1111 1347899999999988876 66643
No 379
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=75.28 E-value=41 Score=31.96 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCC-EEEEEcCCCcEEEecC
Q 010302 86 GPVKVMRYNPVFD-TVISADDKGIIEYWSP 114 (513)
Q Consensus 86 ~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~ 114 (513)
.....|+|.|+|+ ++++ ...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeC
Confidence 3468999999999 6554 45788988875
No 380
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=74.57 E-value=59 Score=30.78 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=61.2
Q ss_pred EecCCCEEEEEeC-------CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCC--cce-EEEEe---CCCCeEEEEe
Q 010302 3 VSVDGLLCCSISN-------DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDV--KAG-LAISD---RNSSFVHIYD 69 (513)
Q Consensus 3 ~s~dg~~las~s~-------D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~--~~~-~l~s~---~~d~~I~iwd 69 (513)
.+++.++++..+- .|.+.+|..+.+. .+.+ ++|.. +...+-.++ ... +++-+ ...+.++|-+
T Consensus 159 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~i--eGhaa--~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiE 233 (365)
T 2xzh_A 159 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI--EGHAA--SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 233 (365)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEE--CCSEE--EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCEEEEEeEeccCCccceeEEEEeecccc-ccee--eeeee--eeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 4677888776652 3677888887533 2332 23322 222232222 111 22222 2235788888
Q ss_pred cCCC-CCcce---EEee------cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCC
Q 010302 70 ARAD-SNEPL---ISKK------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ 118 (513)
Q Consensus 70 ~~~~-~~~~i---~~~~------~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 118 (513)
+... .+.+. +... .-.+--.++..++....+..-..-|.+.++|++++.
T Consensus 234 i~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 234 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp CSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 7422 11111 1111 113345678888888889889999999999998843
No 381
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.02 E-value=4.5 Score=44.66 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=35.2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec
Q 010302 142 TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 180 (513)
Q Consensus 142 ~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~ 180 (513)
..+.+++..++..++.+-|.|+++|+|++.+++++.+.+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888899999999999999999999999999876
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.64 E-value=16 Score=38.50 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=29.3
Q ss_pred ecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC
Q 010302 4 SVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP 36 (513)
Q Consensus 4 s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~ 36 (513)
..+..++++-+.|.++|+|++.+++++....+.
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 456789999999999999999999999888874
No 383
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=69.23 E-value=36 Score=32.27 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=39.8
Q ss_pred CEEEEEcCCCcEEEecCCCCCCCCcceeeeecCC--ccccccccCCcceEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCe
Q 010302 98 DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD--TNLFEILKSKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRTGK 174 (513)
Q Consensus 98 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~s~-s~D~~I~iwd~~tg~ 174 (513)
..++.++.||.|.-+|..+++. .|..+.. .++........ ..++..++.. +.||.|..++..+|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-----~W~~~~~~~~p~~~~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-----IWSIEPENFQPLIEIQEPSR-------LETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-----EEEECGGGSCCSEECCCSCT-------TTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE-----EEEecCCccCCcEEecCCcc-------ccCCcEEEEEECCCCEEEEEECCCCc
Confidence 3677788888888888877653 5555443 11111111110 0133344433 579999999999986
Q ss_pred EEE
Q 010302 175 LRR 177 (513)
Q Consensus 175 ~~~ 177 (513)
...
T Consensus 79 ~~~ 81 (339)
T 2be1_A 79 QKL 81 (339)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 384
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.07 E-value=69 Score=30.85 Aligned_cols=166 Identities=10% Similarity=0.112 Sum_probs=89.3
Q ss_pred CCCcceeeeecCC--ccccccc------cCCcceEEEEEc---CC----CCEE-EEEeCCCcEEEEEcCCCeEEEEeccc
Q 010302 119 FPESEVSFRLKSD--TNLFEIL------KSKTTVSAIEVS---PD----GKQF-SITSPDRRIRVFWFRTGKLRRVYDES 182 (513)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~~~~------~~~~~v~~v~~s---pd----g~~l-~s~s~D~~I~iwd~~tg~~~~~~~~~ 182 (513)
++..++.|+.+++ +.++.+. ...+....+.+. |+ +.+. ++=+...-|.|+|+.+++..+.++.+
T Consensus 121 ~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 121 HRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp CCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred CCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 3445666777776 5554432 124557888887 32 2232 23335778999999999998877432
Q ss_pred HHHHHHHhcCCCCccccccccccceeeeeeeccccCCCCCCceEEcCC----CCEEEEccccceEEEEcccCcEEEEeCC
Q 010302 183 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES----SNFLIYATLLGIKIVNLHTNKVSRILGK 258 (513)
Q Consensus 183 ~~~i~~~~~~~~~~~~l~~~~~~~r~~~e~e~~~~~~~~~~~i~fd~~----g~~li~~s~~gi~v~d~~t~~~v~~~g~ 258 (513)
. .......+.+. |..+. .......++.+++ ++.|.+....+-+++.+.|.- +..
T Consensus 201 ~------~pd~~~~~~i~----G~~~~--------~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~----L~~ 258 (381)
T 3q6k_A 201 F------KAERPTKFDYG----GKEYE--------FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKE----LKQ 258 (381)
T ss_dssp G------SCCSCEEEEET----TEEEE--------ECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHH----HSS
T ss_pred C------ccccCcceEEC----CEEeE--------eccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHH----hhC
Confidence 1 10000111111 11111 1234567888988 889998888777777665431 110
Q ss_pred CCccchhheeccccCCcCCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 010302 259 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 319 (513)
Q Consensus 259 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~~~~i~i~~~~~ 319 (513)
.. . ...+..++.+........+.|+ ..++.|+++-.+.+.|++|+-..
T Consensus 259 ~~-~--~~~v~~~G~kg~~s~~~~~~~D----------~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 259 KG-G--KLNPELLGNRGKYNDAIALAYD----------PKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TT-C--CCCCEEEEECCTTCCEEEEEEC----------TTTCEEEEEESSSSEEEEEETTS
T ss_pred cc-h--hhceEEeeecCCCCCcceEEEe----------CCCCeEEEEeccCCeEEEEeCCC
Confidence 00 0 0011111111100111111221 26789999999999999997654
No 385
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=68.96 E-value=81 Score=30.01 Aligned_cols=134 Identities=18% Similarity=0.214 Sum_probs=74.5
Q ss_pred CCcEEEEEccCC--ceeEEEEcCCC-CCcEEEEEEcCCCcceEEEEeCC-----------------CCeEEEEecCCCCC
Q 010302 16 DKSVKIYDVVNY--DMMLMIRLPFI-PGAVEWVYKQGDVKAGLAISDRN-----------------SSFVHIYDARADSN 75 (513)
Q Consensus 16 D~~v~iwd~~~~--~~~~~~~l~~~-~~~v~~v~~s~~~~~~~l~s~~~-----------------d~~I~iwd~~~~~~ 75 (513)
+.+|.+|++... .....-.+... -...+.+...+++. +.++... .+.+.-+|. +
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~----~ 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP----N 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT----T
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccchhhccCCccEEEEEEC----C
Confidence 467778777643 22222222222 23567787777776 6666441 233444443 2
Q ss_pred cceEEeecCCCCeEEEEEcCCCCEEEEEc-CCCcEEEecCCC-CCCCCcceeeeecCCccccccccCCcceEEEEEcC-C
Q 010302 76 EPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-D 152 (513)
Q Consensus 76 ~~i~~~~~h~~~V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-d 152 (513)
+ +..+...-..-..++|+||++.|..+. ..+.|..|++.. +++ .....+ ...+.+-.+++.+ +
T Consensus 212 ~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l------------~~~~~~-~~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 212 D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL------------TPLRVL-SFDTLVDNISVDPVT 277 (355)
T ss_dssp C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE------------EEEEEE-ECSSEEEEEEECTTT
T ss_pred e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE------------ecCEEE-eCCCCCceEEEeCCC
Confidence 2 233333334568999999998775554 567888888753 111 001112 2245678899999 5
Q ss_pred CCEEEEEeCC-CcEEEEE
Q 010302 153 GKQFSITSPD-RRIRVFW 169 (513)
Q Consensus 153 g~~l~s~s~D-~~I~iwd 169 (513)
|++.+++..+ +.|..|+
T Consensus 278 G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CCEEEEEESCHHHHHSCC
T ss_pred CcEEEEecCCceEEEEEC
Confidence 9887766544 3344444
No 386
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.85 E-value=9.7 Score=40.06 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
.|.++.+ +..++++-|.|+++|+|++++++++.+.+-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 578999999999999999999999998764
No 387
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=66.62 E-value=70 Score=36.73 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=63.3
Q ss_pred CCCeEEEEecCCCCCcceEEeecCCCCeEEEEEc--CC-CCEEEEEcC---CCcEEEecCCCCCCCCcceeeeecCCccc
Q 010302 61 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN--PV-FDTVISADD---KGIIEYWSPHTLQFPESEVSFRLKSDTNL 134 (513)
Q Consensus 61 ~d~~I~iwd~~~~~~~~i~~~~~h~~~V~~l~~s--p~-~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 134 (513)
-.|.+.+|... .+..+.+.+|.+....+... +. ...++-+.. .+.++|.++........ .|..+.....
T Consensus 177 v~G~mQLyS~e---r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~--~f~kk~~~~~ 251 (1630)
T 1xi4_A 177 VVGAMQLYSVD---RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPKKAVDVF 251 (1630)
T ss_pred ccceeeeeecc---cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC--CCcccccccc
Confidence 35788999884 34445566776655444442 21 223332222 25788887744200000 1111100001
Q ss_pred cccccCCcceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q 010302 135 FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 178 (513)
Q Consensus 135 ~~~~~~~~~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~ 178 (513)
+.-.....-+.++..|+.-..+...+.-|.|.+||+.||.++..
T Consensus 252 ~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 252 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred CCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 11111234467888888888787888999999999999998653
No 388
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.01 E-value=4.7 Score=45.58 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc
Q 010302 143 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 181 (513)
Q Consensus 143 ~v~~v~~spdg~~l~s~s~D~~I~iwd~~tg~~~~~~~~ 181 (513)
.+.+++..++..++++-|.|+++|+|++.+++++.+.+-
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455667778899999999999999999999999998763
No 389
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=59.80 E-value=1.4e+02 Score=29.53 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=62.7
Q ss_pred EecCCCEEEEEeC-------CCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcce-EEEEeCC---CCeEEEEecC
Q 010302 3 VSVDGLLCCSISN-------DKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAG-LAISDRN---SSFVHIYDAR 71 (513)
Q Consensus 3 ~s~dg~~las~s~-------D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~-~l~s~~~---d~~I~iwd~~ 71 (513)
.++|.++++..|- .|.+.+|..+.+.. +.+ ++|...-..+....+.... +++-+.. .+.++|-++.
T Consensus 158 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~ 234 (494)
T 1bpo_A 158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (494)
T ss_dssp ECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEE--CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred ECCCCCeEEEEeecccCCcccceEEEeecccccc-chh--eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 4678888776542 46778888875432 222 2333222222222222211 2222222 3678888874
Q ss_pred CC-CCcc---eEEee------cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCC
Q 010302 72 AD-SNEP---LISKK------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ 118 (513)
Q Consensus 72 ~~-~~~~---i~~~~------~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 118 (513)
.. .+.+ .+... .-.+--.++..++....+..-..-|.+.++|++++.
T Consensus 235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 21 1111 11111 112335678889988889889999999999998843
No 390
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.33 E-value=32 Score=37.83 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=29.3
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP 36 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~ 36 (513)
..++..++.+-+.|+++|+|++.+++++....+.
T Consensus 243 ~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 243 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp EETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4467789999999999999999999998887653
No 391
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=54.99 E-value=1.5e+02 Score=28.45 Aligned_cols=145 Identities=10% Similarity=0.075 Sum_probs=81.3
Q ss_pred cEEEEEccCC--ceeEEEEcCCC----CCcEEEEEEc---CC---CcceEEEEeCCCCeEEEEecCCCCCcceEEee---
Q 010302 18 SVKIYDVVNY--DMMLMIRLPFI----PGAVEWVYKQ---GD---VKAGLAISDRNSSFVHIYDARADSNEPLISKK--- 82 (513)
Q Consensus 18 ~v~iwd~~~~--~~~~~~~l~~~----~~~v~~v~~s---~~---~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~--- 82 (513)
.|-+||+.+. +.++.+.++.. ......+... +. ......++.+...-|.|+|+. +++..+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~--~~~swRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK--KQDSWNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT--TTEEEEEECGGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC--CCcEEEEccCCC
Confidence 5779999999 99988887532 2346666665 11 234467777778899999997 554444332
Q ss_pred -----------cC----CCCeEEEEEcCC----CCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCC--
Q 010302 83 -----------VH----MGPVKVMRYNPV----FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK-- 141 (513)
Q Consensus 83 -----------~h----~~~V~~l~~sp~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 141 (513)
+. ...|..|+.+|+ ++.|.-....+. ++|.+.+.-+... .....+.. .+.+
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~------~~~~~v~~-~G~kg~ 273 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQK------GGKLNPEL-LGNRGK 273 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSST------TCCCCCEE-EEECCT
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCc------chhhceEE-eeecCC
Confidence 00 135677778776 555543333321 2232211000000 00111111 1212
Q ss_pred -cceEEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q 010302 142 -TTVSAIEVS-PDGKQFSITSPDRRIRVFWFRT 172 (513)
Q Consensus 142 -~~v~~v~~s-pdg~~l~s~s~D~~I~iwd~~t 172 (513)
+.-..++.. .+|..+++--....|..|+..+
T Consensus 274 ~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 274 YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 234456675 5777777777788899998764
No 392
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=54.86 E-value=56 Score=33.39 Aligned_cols=80 Identities=9% Similarity=-0.070 Sum_probs=50.7
Q ss_pred eEEEEEcCCCCEEEEEc-CCCcEEEecCCCCCCCCcceeeeec---CCccccccccCCcceEEEEEcCCCCEEEEEeCCC
Q 010302 88 VKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLK---SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 163 (513)
Q Consensus 88 V~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~v~~spdg~~l~s~s~D~ 163 (513)
...+..+|||++++.++ .+.++.++|++.... .|+-+ ....+..-..-.-.....+|.++|.-..|-..|.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~-----~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPD-----LFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH-----HHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhh-----hhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence 35788999999986655 678899998864210 00000 0111111111334578899999995555666899
Q ss_pred cEEEEEcCC
Q 010302 164 RIRVFWFRT 172 (513)
Q Consensus 164 ~I~iwd~~t 172 (513)
.|-.|++..
T Consensus 400 qvvkWni~~ 408 (638)
T 3sbq_A 400 QVVKWNMEE 408 (638)
T ss_dssp EEEEEEHHH
T ss_pred eEEEEeccH
Confidence 999999864
No 393
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=53.78 E-value=1.2e+02 Score=30.14 Aligned_cols=107 Identities=10% Similarity=-0.071 Sum_probs=55.5
Q ss_pred CeEecCCC-EEEEEeCCCcEEEEEccCCce-eEEEEcC--C-------CCCcEEEEEEcCC---CcceEEE-EeCCC---
Q 010302 1 MQVSVDGL-LCCSISNDKSVKIYDVVNYDM-MLMIRLP--F-------IPGAVEWVYKQGD---VKAGLAI-SDRNS--- 62 (513)
Q Consensus 1 v~~s~dg~-~las~s~D~~v~iwd~~~~~~-~~~~~l~--~-------~~~~v~~v~~s~~---~~~~~l~-s~~~d--- 62 (513)
|+|.|||. .|..+...|.|++++...... .....+. . .......++++|+ ...+++. +...+
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~ 98 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWA 98 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSC
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcc
Confidence 46889995 344457789999997532210 1111111 1 1356788999886 2222332 22121
Q ss_pred -------CeEEEEecCCC--------CCcceEEee--cCCCCeEEEEEcCCCCEEEEEcCCC
Q 010302 63 -------SFVHIYDARAD--------SNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKG 107 (513)
Q Consensus 63 -------~~I~iwd~~~~--------~~~~i~~~~--~h~~~V~~l~~sp~~~~l~s~s~dg 107 (513)
..|.-|.+... +.+.+..+. .....-..|+|.|||.+.++.+..+
T Consensus 99 ~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 99 IGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp SSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred cCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 13333554311 112333332 1112357899999999888766543
No 394
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=42.96 E-value=2.6e+02 Score=27.60 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCC-EEEEEcCCCcEEEecCC
Q 010302 86 GPVKVMRYNPVFD-TVISADDKGIIEYWSPH 115 (513)
Q Consensus 86 ~~V~~l~~sp~~~-~l~s~s~dg~i~iwd~~ 115 (513)
..-+.|+|.|++. .++.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3457899999986 44455678999999753
No 395
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.01 E-value=26 Score=39.41 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=29.5
Q ss_pred EecCCCEEEEEeCCCcEEEEEccCCceeEEEEcC
Q 010302 3 VSVDGLLCCSISNDKSVKIYDVVNYDMMLMIRLP 36 (513)
Q Consensus 3 ~s~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~ 36 (513)
..++..++.+-+.|+++|||++.+++++....+.
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4567789999999999999999999998887754
No 396
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=36.36 E-value=11 Score=19.64 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.5
Q ss_pred HHHHHHhhhccccCCc
Q 010302 382 VENFTTHCRNEYYNNL 397 (513)
Q Consensus 382 ~~~f~~l~~~~~y~~~ 397 (513)
-.||-.-.+.|||||-
T Consensus 3 wknfwsslrkgfydge 18 (26)
T 2khf_A 3 WKNFWSSLRKGFYDGE 18 (26)
T ss_dssp HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHhhcccch
Confidence 4689888899999984
No 397
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=28.22 E-value=1.5e+02 Score=30.32 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCEEEEEcCCC------------cEEEecCCCCCCCCcceeeeecCCcccccc-cc-CCcceEEEEEcCCC
Q 010302 88 VKVMRYNPVFDTVISADDKG------------IIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LK-SKTTVSAIEVSPDG 153 (513)
Q Consensus 88 V~~l~~sp~~~~l~s~s~dg------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~v~~spdg 153 (513)
.-.|+|+|.|++++.-+.+. .+.+.+..+ ++ ++.+ .. ....++.++|+||+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~--------------g~-~~rf~~~P~gaE~TG~~fspDg 542 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT--------------GE-IRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT--------------CC-EEEEEECCTTCEEEEEEECTTS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC--------------Ce-EEEEEeCCCCccCcCeeECCCC
Confidence 35689999999777655431 122223333 22 2222 22 34569999999999
Q ss_pred CEEEEE
Q 010302 154 KQFSIT 159 (513)
Q Consensus 154 ~~l~s~ 159 (513)
+.|.+.
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 987754
No 398
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=26.64 E-value=5.6e+02 Score=26.64 Aligned_cols=152 Identities=10% Similarity=0.035 Sum_probs=76.8
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCC----CCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCC---CCcc
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPF----IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD---SNEP 77 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~----~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~---~~~~ 77 (513)
.+|++.+ |. ++-+..||..+++......... ....+.++....++. +-+ |...+-+..+|.... ....
T Consensus 382 ~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWi-gT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 382 KEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ--LWI-STCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp TTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE--EEE-EESSSCEEEEEHHHHHHCCSSE
T ss_pred CCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC--EEE-EECCCceEEEccccccccCCcc
Confidence 3566554 33 3468888887765433221111 123466666554443 333 333344777775310 0111
Q ss_pred e---EEee----cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEc
Q 010302 78 L---ISKK----VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 150 (513)
Q Consensus 78 i---~~~~----~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 150 (513)
. ..+. .....|.++...++|++-+.++..+-+..+|..+.+.. .+. .. .+ .....+.++...
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~------~~~-~~---~~-~~~~~~~~i~~d 525 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT------KLF-AD---EL-TGEKSPNYLLCD 525 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE------EEC-TT---TS-CGGGCEEEEEEC
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE------Eec-CC---Cc-CCCcccceEEEC
Confidence 1 1111 11235889998888887663333344667787653210 000 00 00 012457888888
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCe
Q 010302 151 PDGKQFSITSPDRRIRVFWFRTGK 174 (513)
Q Consensus 151 pdg~~l~s~s~D~~I~iwd~~tg~ 174 (513)
.+|+..+. +.. -+..||..+++
T Consensus 526 ~~g~lWig-t~~-Gl~~~~~~~~~ 547 (758)
T 3ott_A 526 EDGLLWVG-FHG-GVMRINPKDES 547 (758)
T ss_dssp TTSCEEEE-ETT-EEEEECC--CC
T ss_pred CCCCEEEE-ecC-ceEEEecCCCc
Confidence 88887764 344 47777766544
No 399
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=25.29 E-value=5.9e+02 Score=26.45 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=73.3
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCceeEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEecCCCCCcceEEee--
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDMMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-- 82 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~~~~~~~~i~~~~-- 82 (513)
.+|.+. .++.+| +..||..+.+... ........+..+.. .++. +.+ ++.+ -+..+|.. +.+ +..+.
T Consensus 72 ~~g~lW-igT~~G-l~~yd~~~~~f~~--~~~~~~~~i~~i~~-~~g~--lWi-gt~~-Gl~~~~~~--~~~-~~~~~~~ 139 (758)
T 3ott_A 72 DNTYLY-MGTDNG-ILVYNYRADRYEQ--PETDFPTDVRTMAL-QGDT--LWL-GALN-GLYTYQLQ--SRK-LTSFDTR 139 (758)
T ss_dssp TTTEEE-EEETTE-EEEEETTTTEECC--CSCCCCSCEEEEEE-ETTE--EEE-EETT-EEEEEETT--TCC-EEEECHH
T ss_pred CCCcEE-EEeCCC-eEEEeCCCCEEEC--cccCCCceEEEEEe-cCCc--EEE-EcCC-cceeEeCC--CCe-EEEeccC
Confidence 344433 344444 6788887654321 11111234555543 2322 333 3333 57788875 333 33331
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcceEEEEEcCCCCEEEEE
Q 010302 83 ---VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 159 (513)
Q Consensus 83 ---~h~~~V~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s~ 159 (513)
.....|.++....++.+.+.. .+| +..++..+.+.. .+.. .. ........|.++...+++..|-.|
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~----~~~~--~~---~~~~~~~~i~~i~~d~~~~~lWig 208 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGT-YNG-LCRYIPSNGKFE----GIPL--PV---HSSQSNLFVNSLLEDTTRQCVWIG 208 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEE-TTE-EEEEETTTTEEE----EECC--CC---CTTCSSCCEEEEEEETTTTEEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEe-CCC-HhhCccCCCceE----EecC--CC---ccccccceeEEEEEECCCCEEEEE
Confidence 123468888888888766643 444 666776543210 0000 00 000012348888888777644444
Q ss_pred eCCCcEEEEEcCCCeE
Q 010302 160 SPDRRIRVFWFRTGKL 175 (513)
Q Consensus 160 s~D~~I~iwd~~tg~~ 175 (513)
+. +-+..+|..+++.
T Consensus 209 t~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 209 TE-GYLFQYFPSTGQI 223 (758)
T ss_dssp EE-EEEEEEETTTTEE
T ss_pred EC-CCCeEEcCCCCeE
Confidence 43 4577888877764
No 400
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=24.23 E-value=44 Score=17.92 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=9.4
Q ss_pred CCCceEEEEecCC
Q 010302 453 TNGSQFFITTVAT 465 (513)
Q Consensus 453 ~~~s~f~i~~~~~ 465 (513)
...|..||||.+-
T Consensus 8 R~aSSvFITLapp 20 (26)
T 2k9u_B 8 RVASSVFITLAPP 20 (26)
T ss_dssp SCEEEEEEEECCS
T ss_pred heeeeEEEEecCc
Confidence 3456799999764
No 401
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=22.95 E-value=4.4e+02 Score=24.14 Aligned_cols=155 Identities=10% Similarity=0.072 Sum_probs=77.0
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCce-------eEEEEcCCCCCcEEEEEEcCCCcceEEEEeCCCCeEEEEec---CCC-
Q 010302 5 VDGLLCCSISNDKSVKIYDVVNYDM-------MLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDA---RAD- 73 (513)
Q Consensus 5 ~dg~~las~s~D~~v~iwd~~~~~~-------~~~~~l~~~~~~v~~v~~s~~~~~~~l~s~~~d~~I~iwd~---~~~- 73 (513)
++..++++.+.+|.|+--.+...+. ...+.+... ..+..+........++++ +..|.++-... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~--T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMI--SNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEE--ETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEE--ECCCeEEEEEHHHCCCCC
Confidence 5677889999999999887765432 112222222 233333333333322233 34555544433 210
Q ss_pred ---CCcc---eEEeecCCCCeEEEEEcC---CCCEEEEEcCCCcEEEecCCCCCCCCcceeeeecCCccccccccCCcce
Q 010302 74 ---SNEP---LISKKVHMGPVKVMRYNP---VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTV 144 (513)
Q Consensus 74 ---~~~~---i~~~~~h~~~V~~l~~sp---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (513)
.+.+ ...+.. ...|.++...+ +..+++..+..|.++...+..+.... ..+.....+.. ...+
T Consensus 83 r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-------~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 83 RASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-------SRGVIVIKLND-KDFV 153 (312)
T ss_dssp -----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCT-TCCE
T ss_pred ccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-------CCcEEEEecCC-CCEE
Confidence 1111 011222 23444443333 46778888999999988765432110 11222333333 3455
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010302 145 SAIEVSPDGKQFSITSPDRRIRVFWFR 171 (513)
Q Consensus 145 ~~v~~spdg~~l~s~s~D~~I~iwd~~ 171 (513)
..+....++..++..+.+|.+..+...
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ 180 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSR 180 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 555554445567777888887777654
No 402
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=21.32 E-value=2.7e+02 Score=28.46 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCEEEEEcCC------------CcEEEecCCCCCCCCcceeeeecCCccccccc-c-CCcceEEEEEcCC
Q 010302 87 PVKVMRYNPVFDTVISADDK------------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-K-SKTTVSAIEVSPD 152 (513)
Q Consensus 87 ~V~~l~~sp~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~v~~spd 152 (513)
....|.|.++|.+.+..+.. +.+..++..+ ++ +..+. . ....++.++||||
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t--------------Ge-l~~fl~~P~~aEpnGiafSPD 541 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT--------------GE-IRRFMVGPIGCEVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT--------------CC-EEEEEECCTTCEEEEEEECTT
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC--------------Ce-EEEEEeCCCCccccCCEECCC
Confidence 34578899988877744321 1333344433 22 22222 2 2356899999999
Q ss_pred CCEEEEEe
Q 010302 153 GKQFSITS 160 (513)
Q Consensus 153 g~~l~s~s 160 (513)
++.|.++-
T Consensus 542 ~ktLfV~v 549 (592)
T 4a9v_A 542 QKTLFVGI 549 (592)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99887653
Done!