Query 010303
Match_columns 513
No_of_seqs 292 out of 2549
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 22:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00164 bifunctional dihydrof 100.0 2E-130 5E-135 1053.7 43.8 494 10-513 1-514 (514)
2 KOG0673 Thymidylate synthase [ 100.0 4.1E-99 9E-104 716.3 20.9 273 241-513 7-293 (293)
3 TIGR03284 thym_sym thymidylate 100.0 5.6E-91 1.2E-95 697.5 18.8 261 245-513 1-296 (296)
4 PRK13821 thyA thymidylate synt 100.0 3.1E-90 6.7E-95 697.6 19.4 266 244-513 1-323 (323)
5 PRK01827 thyA thymidylate synt 100.0 2.3E-86 5E-91 659.8 19.2 250 244-513 1-264 (264)
6 COG0207 ThyA Thymidylate synth 100.0 8E-85 1.7E-89 638.8 20.8 250 244-513 3-268 (268)
7 PF00303 Thymidylat_synt: Thym 100.0 3.3E-76 7.1E-81 592.9 16.4 255 244-513 1-269 (269)
8 cd00351 TS_Pyrimidine_HMase Th 100.0 3.7E-60 8E-65 462.0 14.9 200 246-466 1-215 (215)
9 KOG1324 Dihydrofolate reductas 100.0 7.5E-43 1.6E-47 322.2 15.3 181 21-201 1-181 (190)
10 PRK00956 thyA thymidylate synt 100.0 3.8E-42 8.2E-47 333.5 14.6 185 241-470 8-207 (208)
11 PF00186 DHFR_1: Dihydrofolate 100.0 2.8E-41 6.1E-46 315.4 17.8 159 23-200 1-161 (161)
12 TIGR03283 thy_syn_methano thym 100.0 3.9E-40 8.5E-45 317.2 13.8 178 241-464 6-198 (199)
13 PRK10769 folA dihydrofolate re 100.0 1.9E-39 4.2E-44 302.4 17.7 156 24-201 2-159 (159)
14 COG0262 FolA Dihydrofolate red 100.0 3.4E-36 7.4E-41 283.0 19.0 164 23-200 1-166 (167)
15 cd00209 DHFR Dihydrofolate red 100.0 8.4E-31 1.8E-35 244.1 18.8 158 24-199 1-158 (158)
16 PRK00478 scpA segregation and 100.0 5.4E-31 1.2E-35 284.5 17.1 155 24-203 2-156 (505)
17 PF01872 RibD_C: RibD C-termin 99.6 4.2E-15 9E-20 143.0 13.4 151 22-182 1-191 (200)
18 PRK05625 5-amino-6-(5-phosphor 99.4 5.1E-12 1.1E-16 123.5 17.1 165 21-201 2-216 (217)
19 TIGR00227 ribD_Cterm riboflavi 99.4 8.4E-12 1.8E-16 121.6 16.4 140 21-170 2-185 (216)
20 TIGR00326 eubact_ribD riboflav 99.3 4.2E-11 9.1E-16 125.1 12.6 137 18-165 137-308 (344)
21 PRK14059 hypothetical protein; 99.0 4E-08 8.7E-13 98.6 21.0 168 20-201 29-250 (251)
22 TIGR01508 rib_reduct_arch 2,5- 98.8 3.1E-07 6.6E-12 89.7 18.5 137 23-170 2-180 (210)
23 PRK14719 bifunctional RNAse/5- 98.6 5.4E-06 1.2E-10 87.3 19.8 136 20-165 138-316 (360)
24 COG1985 RibD Pyrimidine reduct 98.4 1.5E-05 3.4E-10 78.4 18.5 141 21-171 3-186 (218)
25 PRK10786 ribD bifunctional dia 98.3 1.3E-05 2.8E-10 84.8 15.8 138 18-165 143-328 (367)
26 PLN02807 diaminohydroxyphospho 97.6 0.0015 3.4E-08 69.4 15.1 132 20-165 174-346 (380)
27 PHA03370 virion protein US2; P 36.1 1.2E+02 0.0025 30.7 6.8 85 113-198 113-208 (269)
28 PRK00536 speE spermidine synth 30.5 28 0.0006 35.5 1.6 43 129-173 72-118 (262)
29 PF08353 DUF1727: Domain of un 21.9 1.4E+02 0.0031 26.4 4.3 85 24-137 22-108 (113)
No 1
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=2.5e-130 Score=1053.66 Aligned_cols=494 Identities=53% Similarity=0.917 Sum_probs=446.1
Q ss_pred cCCCccCCCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhcc------CCCCCCcEEEEccccccccCCCC
Q 010303 10 SNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT------SDAGKRNAVIMGRKTWESIPLEH 83 (513)
Q Consensus 10 ~~~~~~~~~~~mrki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~------~~~~~~~~vIMGRkTyeslp~~~ 83 (513)
|+++.+ ++++.+|+|++.+|+||.+|+|||++|+||+||+++|+++ ++|+++++|||||||||++|...
T Consensus 1 ~~~~~~-----~~~i~lIvA~~~n~~IG~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~~~ 75 (514)
T PTZ00164 1 SEDYSS-----LKDFSIVVAVTLKRGIGIGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPKKF 75 (514)
T ss_pred Cccccc-----CCCEEEEEEECCCCCeeCCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhhhc
Confidence 345555 6889999999999999999999999999999999999843 46888999999999999998555
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc
Q 010303 84 RPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI 163 (513)
Q Consensus 84 ~pl~~R~~iVlSrt~~~~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~ 163 (513)
+||++|.||||||+.... ...+++.+++|+++|++.+++.. +.++||||||++||++||++++||+++||+|...+
T Consensus 76 rPLp~R~nIVLSr~~~~~-~~~~~v~v~~sl~eal~~lk~~~---~~~dI~VIGG~~Iy~~~L~~~lvDel~LTvI~~~g 151 (514)
T PTZ00164 76 RPLKNRINVVLSRTLTEE-EADPGVLVFGSLEDALRLLAEDL---SIEKIFIIGGASVYREALSANLLDKIYLTRVNSEY 151 (514)
T ss_pred cccCCCeEEEEcCCCCcc-cCCCCEEEeCCHHHHHHHHhccC---CCCcEEEEchHHHHHHHhcCCCCCEEEEEEEEecc
Confidence 899999999999987431 12356889999999999998641 34789999999999999999999999999997777
Q ss_pred cCCccCCCCCCCCceeeeeecCcccCCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChh
Q 010303 164 ECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHE 243 (513)
Q Consensus 164 ~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
+||+|||.++.+.|++++.+....++++.|+|++|+|+...+.+. ...-....+.++.+.-+....+.++|+.++++|.
T Consensus 152 eGD~~FP~~~~~~~~l~~~s~~~~~~~v~y~f~~y~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T PTZ00164 152 ECDVFFPKIPESFFIVAIVSQTFSTNGTSYDFVIYEKKNDDEEDL-LGKIFGQMKMTGRKKSPKEQLYKACPSLKIREHE 230 (514)
T ss_pred ccCccCCCCCchhcEEEEEEEeccCCCceEEEEEEeccCcchhcc-ccccccccccccccccccccccccCccccccCCc
Confidence 999999999888899887555556788899999999986444333 1111111222333232233457789999999999
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCcccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (513)
|+||+++|++||++|+.+.||||++|+++||+++||||+++||++||||++||++++||||||+|+||+.+|++.|++||
T Consensus 231 ~~~Yl~l~~~Il~~G~~~~~rtG~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~~~EllWfl~g~tn~~~l~~~~~~iW 310 (514)
T PTZ00164 231 EFQYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRESFPLLTTKKVFLRGIIEELLWFIRGETNGNLLLDKGVRIW 310 (514)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCceeeecCceEEEeCCCCCceeeechhhHHHHHHHHHHHHhCCccHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcccccc
Q 010303 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (513)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~ 403 (513)
|+|+.++|+++.+++++++||||++||+|||+|++.|.+|+++|+++++|||++||++||+||+|||+|+++|||.++++
T Consensus 311 d~w~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~i~~~wn~~d~~~ 390 (514)
T PTZ00164 311 EGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKDMHDDYTGQGVDQLKNIIETIKNNPDDRRLILTAWNPSALDQ 390 (514)
T ss_pred CCCcccchhcccccccccCCCcccchhhhhhccccccccccccccCCcccHHHHHHHHHhcCCcchheEEEEECHhHhcc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHh
Q 010303 404 MALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 469 (513)
Q Consensus 404 ~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 469 (513)
|+|||||.++ |||||++||+||||++|++||+|||++||+++|+|+|+++|+|||+||++++++||
T Consensus 391 ~~l~PC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~ya~L~~~iA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 470 (514)
T PTZ00164 391 MALPPCHLLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDALKEQL 470 (514)
T ss_pred cCCCCCceEEEEEEeCCEEEEEEEEehhhhhhcchhhHHHHHHHHHHHHHHhCCEeeEEEEEeccceeehhhHHHHHHHh
Confidence 9999999876 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 470 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 470 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+|+|+++|+|+||+++++|+||+++||+|+||+|||+||+||||
T Consensus 471 ~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~~p~i~~~~av 514 (514)
T PTZ00164 471 ERVPYPFPTLKLKREVENIEDFTIEDIEVIGYVPHPKIKMEMAV 514 (514)
T ss_pred cCCCCCCCeEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999998
No 2
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-99 Score=716.27 Aligned_cols=273 Identities=78% Similarity=1.340 Sum_probs=270.6
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCc
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (513)
++.|.|||++|++|+++|..+.||||+||+|+||.||||+||+.||||||||++|+.+++|||||++|+||++.|.++|+
T Consensus 7 ~~eE~~YL~lv~~Ii~~G~~r~DrtgtgTlSvFg~qmrf~Lr~tfPLLTTKrVfwrgV~EElLwfi~G~t~ak~l~~kgv 86 (293)
T KOG0673|consen 7 NHEEFQYLNLVKHIISNGARRMDRTGTGTLSVFGCQMRFSLRDTFPLLTTKRVFWRGVVEELLWFISGSTDAKVLEEKGV 86 (293)
T ss_pred chhHHHHHHHHHHHHhcCCccCCcCCCceeeeeeeeeeeehhccccchhhhhHHHHHHHHHHHHHHhCCCccchhhhcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccc
Q 010303 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (513)
Q Consensus 321 ~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~ 400 (513)
+|||+|++|+|||++|+..+++||+|++||+|||||++.|.+|++||+++|+|||..||++||+||++||+|+++|||.|
T Consensus 87 ~IWd~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~d 166 (293)
T KOG0673|consen 87 HIWDGNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPLD 166 (293)
T ss_pred eeecCCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHH
Q 010303 401 LKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 466 (513)
Q Consensus 401 ~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~ 466 (513)
+.+|+|||||.++ |||.||.||+||||++|++|++|||+.|||+||+|+|++|+||||.+|++.++
T Consensus 167 l~~malpPCH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al~ 246 (293)
T KOG0673|consen 167 LGKMALPPCHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDALQ 246 (293)
T ss_pred cccccCCccceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHHH
Confidence 9999999999877 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 467 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 467 ~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+||.|+|++||+|.|++++++|+||+.+||+|+||+|||+|||+|||
T Consensus 247 ~Ql~r~PrpFPkl~i~~~~k~id~F~~~df~l~~y~php~I~M~Mav 293 (293)
T KOG0673|consen 247 EQLQRPPRPFPKLKINPEVKDIDDFQAEDFELVGYDPHPKIKMKMAV 293 (293)
T ss_pred HHHhcCCCCCCceeecccccccccccccceeeeccCCCCCccccccC
Confidence 99999999999999999999999999999999999999999999997
No 3
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=100.00 E-value=5.6e-91 Score=697.50 Aligned_cols=261 Identities=53% Similarity=0.914 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCccccC
Q 010303 245 YLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (513)
Q Consensus 245 ~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW~ 324 (513)
+||+++|++|+++|+.+.||||+||+++||+++||||+++||++||||++||++++||||||+|+||+++|++.|++|||
T Consensus 1 ~qYl~l~~~Il~~G~~~~drtG~gt~s~fg~~~r~dl~~~fPllTTKk~~~k~~i~ElLWfl~G~tn~~~L~~~~v~IWd 80 (296)
T TIGR03284 1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIWD 80 (296)
T ss_pred ChHHHHHHHHHHhCCcCCCCCCCcccccccceEEEeCCCCcceeeeechhHHHHHHHHHHHHhCCccHHHHHHcCCeecC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhHhhcCC--------Cc-------------CCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHh
Q 010303 325 GNASREYLDSVGL--------TD-------------REEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIK 383 (513)
Q Consensus 325 ~~~~~~~l~~~~~--------~~-------------~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk 383 (513)
+|+.++||++.|+ ++ +++||+|++||+|||+|++. +|+++|||++||++||
T Consensus 81 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpvYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk 152 (296)
T TIGR03284 81 EWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATP--------DGETIDQIKNVIEMIK 152 (296)
T ss_pred CcccccccccccccccccccccccccccccccccccccCCCCccchhhhheeccCC--------CCCchHHHHHHHHHHh
Confidence 9999999998765 22 33799999999999999763 3678999999999999
Q ss_pred cCCCCcceEEEccCccccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEE
Q 010303 384 NNPNDRRIVLSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFI 449 (513)
Q Consensus 384 ~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~ 449 (513)
+||+|||+|+++|||.++++|+|||||.++ |||||+++|+|||+++|++||+|||++||+++|+|+
T Consensus 153 ~nP~sRR~iv~~wnp~dl~~m~lpPCh~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~~ 232 (296)
T TIGR03284 153 TNPDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEFV 232 (296)
T ss_pred cCCchhheEEEeeChhhhhccCCccceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCEeEEEE
Confidence 999999999999999999999999999876 999999999999999999999999999999999999
Q ss_pred EEEccccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 450 HVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 450 ~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
|+++|+|||+||++++++||+|+|+++|+|+|++++++|+||++|||+|+||+|||+||+||||
T Consensus 233 h~igdaHIY~nhi~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~ik~~~av 296 (296)
T TIGR03284 233 HTLGDAHLYSNHLEQAKLQLTREPRPLPKLKLNPEKKDIFDFEYEDIELEGYDPHPAIKAPVAV 296 (296)
T ss_pred EEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 4
>PRK13821 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=3.1e-90 Score=697.60 Aligned_cols=266 Identities=37% Similarity=0.680 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCcccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (513)
|+||++||++||++|..++||||++|+++||+++||||++|||++||||++||++++|||||++|+||++.|++.|++||
T Consensus 1 m~qYldl~~~Il~~G~~~~dRTGtgt~sifg~~~rfdL~~gfPllTTKkv~~ks~i~ELLWfl~G~tn~~~L~~~~v~IW 80 (323)
T PRK13821 1 MKQYLDLVRTILDTGTWQENRTGIRTISIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRASRSAADFRALGCKVW 80 (323)
T ss_pred CHHHHHHHHHHHHhCCcCCCCCCCccccccCceEEEECCCCCceeEeecchHHHHHHHHHHHHhCCCcHHHHHHcCCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccchh--HhHhhcCCCcCC-CCCccccccccccccccccccccCCCC--------------------C-------Ccch
Q 010303 324 DGNASR--EYLDSVGLTDRE-EGDLGPVYGFQWRHFGARYTNMHADYS--------------------G-------QGFD 373 (513)
Q Consensus 324 ~~~~~~--~~l~~~~~~~~~-~g~lg~~YG~~wR~~~~~~~~~~~~~~--------------------~-------~~~d 373 (513)
|+|+++ +|+++ ++++ +||||++||+|||+|++ +..++.+|+ | +++|
T Consensus 81 d~~~~~~~~~~~~---~~~~~~gdLGpvYG~Qwr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iD 156 (323)
T PRK13821 81 DQNANENAQWLAN---PYRQGVDDLGDVYGVQWRQWPG-YKVLDASADAQIADATSRGFRIVARFDEDGAPKVLLYKAID 156 (323)
T ss_pred CCccccccccccc---cccccCCcccccceeeeeeccc-ccccccccccccccccccccccccccCCCCccccccccChh
Confidence 999865 68876 2333 58999999999999976 333333332 3 4689
Q ss_pred HHHHHHHHHhcCCCCcceEEEccCccccccCCCCCCccCc----------------cccccccccccccHHHHHHHHHHH
Q 010303 374 QLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA----------------QRSADMGLGVPFNIASYALLTCMI 437 (513)
Q Consensus 374 Ql~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~----------------qRS~D~~lG~p~Ni~~y~~L~~~i 437 (513)
||++||++||+||+|||+|+++|||.++++|+|||||.++ |||+|++||+||||++|++|++||
T Consensus 157 Qi~~vI~~Lk~nP~sRR~I~~~Wnp~dl~~maLpPCh~~~QF~V~~~~g~L~~~lyQRS~D~~LG~PfNiasyalL~~mi 236 (323)
T PRK13821 157 QLRQCLDTIMNNPGSRRILFHGWNPAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLV 236 (323)
T ss_pred HHHHHHHHHhcCCCccceEEEEeChhHhccccCCcceEEEEEEEecCCCeEEEEEEeccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 999999999999999999999999
Q ss_pred HHHcCCcceeEEEEEccccccccchhhHHHHhhcCCCCCCeEEeCCCCC-----------CCCCcccCCeEEeCCCCCCC
Q 010303 438 AHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK-----------DIDSFVAEDFKLIGYDPHQK 506 (513)
Q Consensus 438 A~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~-----------~~~d~~~~df~l~~Y~~~~~ 506 (513)
|++||+++|+|+|+++|+|||+||++++++||+|+|+++|+|+|+++++ +|+||++|||+|+||+|||+
T Consensus 237 A~~~gl~~G~~ih~igdaHIY~nhi~~v~eqL~R~P~~~P~l~i~~~~~~~~~~~~~~~~~i~d~~~dDf~l~~Y~~hp~ 316 (323)
T PRK13821 237 GRLTGYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVISDRVPEYAKTGVYEPEWLEKIEPSDFSLVGYRHHEP 316 (323)
T ss_pred HHHhCCEeeeEEEEEEEEEEeHhHHHHHHHHhcCCCCCCCEEEECCCcccccccccccccchhcCCHhHeEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999999998754 68899999999999999999
Q ss_pred CCccccC
Q 010303 507 IEMKMAV 513 (513)
Q Consensus 507 i~~~~av 513 (513)
||+||||
T Consensus 317 Ik~~~av 323 (323)
T PRK13821 317 LTAPMAV 323 (323)
T ss_pred ccccccC
Confidence 9999998
No 5
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=100.00 E-value=2.3e-86 Score=659.76 Aligned_cols=250 Identities=56% Similarity=0.978 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCcccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (513)
|+||+++|++|+++|+.+.||||++|+++||+++||||+++||++||||++||++++||+|||+|++|+++|++++++||
T Consensus 1 m~~Yl~l~~~Il~~G~~~~drTg~~t~~i~g~~~r~dl~~~fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
T PRK01827 1 MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKGFPLLTTKKVHFKSIIHELLWFLRGDTNIAYLQENGVHIW 80 (264)
T ss_pred ChHHHHHHHHHHHhCCCCCCCCCCceEEeccceEEEECCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCCChh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcccccc
Q 010303 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (513)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~ 403 (513)
++|+ +++|++|++||+|||+|++. +++++|||++||++||+||+|||+|+++|||.++++
T Consensus 81 d~~~------------~~~g~lg~~YG~q~r~~~~~--------~g~~~DQl~~vI~~Lk~np~sRR~ii~~wnp~dl~~ 140 (264)
T PRK01827 81 DEWA------------DENGDLGPVYGKQWRSWPTP--------DGRHIDQISKVIEQLKTNPDSRRLIVSAWNPGELDK 140 (264)
T ss_pred hhcc------------ccCCccCCcchHHHhcCcCC--------CCchHHHHHHHHHHHhcCCCchhheeeeeCHhHhhc
Confidence 9995 46799999999999999752 366799999999999999999999999999999999
Q ss_pred CCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHh
Q 010303 404 MALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 469 (513)
Q Consensus 404 ~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 469 (513)
|+|||||.++ |||||+++|+|||+++|++||+|||++||+++|+|+|+++|+|||++|++++++||
T Consensus 141 ~~l~PC~~~~qf~V~~g~L~~~~~qRS~D~~lG~p~Ni~~y~~L~~~vA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 220 (264)
T PRK01827 141 MALPPCHALFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQL 220 (264)
T ss_pred ccCCceEEEEEEEEeCCEEEEEEEEehhhhhccccchHHHHHHHHHHHHHHcCCeeEEEEEEEeeEEEEhhHhhHHHHHh
Confidence 9999999876 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 470 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 470 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 221 ~r~p~~~P~l~i~~~~~~~~~~~~~Df~l~~Y~~~p~ik~~~av 264 (264)
T PRK01827 221 SREPRPLPKLVINPDIKSIFDFEFEDFELEGYDPHPAIKAPVAV 264 (264)
T ss_pred cCCCCCCCEEEECCCCCCcccCCHhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999998
No 6
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8e-85 Score=638.82 Aligned_cols=250 Identities=55% Similarity=0.996 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCC-CCcccccccccccchhhhhHHhhcCCCchhhhhhcCccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~-~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (513)
|+||++++++|+++|..+.||||++|+++||++++||+++ +||++|||+++||++++||+||++|.+|+..|+++|+++
T Consensus 3 ~~~yl~l~~~ile~G~~~~drt~~~t~sv~g~q~~~Dl~~~~fpllttk~v~~ks~i~Ellwf~~g~tn~~~l~~~gv~i 82 (268)
T COG0207 3 MKQYLDLIEHILENGTSRSDRTGTGTLSVFGYQMRFDLSKSEFPLLTTKKVHLKSIIHELLWFLRGDTNIAYLKENGVKI 82 (268)
T ss_pred hhHHHHHHHHHHHcCcccccccccceEEEeccEEEEecccCCCceeEeeeeehhhhhHhhhhhhcCCchHHHHHhcCccc
Confidence 8999999999999997788999999999999999999999 699999999999999999999999999999999999999
Q ss_pred cCccchhHhHhhcCCCcCCC-CCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcccc
Q 010303 323 WDGNASREYLDSVGLTDREE-GDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDL 401 (513)
Q Consensus 323 W~~~~~~~~l~~~~~~~~~~-g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~ 401 (513)
||+|+ .++ |++|++||+|||+|... +|.++|||.+||++||+||+|||+|+++|||.++
T Consensus 83 Wdew~------------~e~~Gdlg~vYg~q~r~~~~~--------~g~~iDQi~~vIe~Lk~np~sRR~ivs~WnP~e~ 142 (268)
T COG0207 83 WDEWA------------DENYGDLGPVYGYQWRKWLRP--------DGEKIDQIDKVIEQLKENPDSRRAIVSAWNPGEL 142 (268)
T ss_pred ccccc------------ccccCcccceeeEeeeeccCc--------CCCccHHHHHHHHHHhcCCcccceEEEecCcccc
Confidence 99998 355 99999999999999753 3789999999999999999999999999999999
Q ss_pred ccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHH
Q 010303 402 KLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 467 (513)
Q Consensus 402 ~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~ 467 (513)
++|+|||||.++ ||||||+||+||||++|++|++|||++||+++|+|+|+++|||||+||+|++++
T Consensus 143 ~~m~l~PC~~l~qF~V~~gkL~~~lyqRS~Di~lg~pfNi~syalL~~mvA~~~Gle~G~f~h~~~daHIY~nh~e~~~~ 222 (268)
T COG0207 143 DEMALPPCHILFQFYVRDGKLSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKE 222 (268)
T ss_pred ccccCCCcEEEEEEEEECCEEEEEEEEecccccccccHHHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEEhhhHHHHHH
Confidence 999999999887 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 468 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 468 ~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
||+|+|+++|+|+||++.++++||++|||+|+||+|||+||+||||
T Consensus 223 ql~R~p~~~pkl~in~~~~~~f~~~~~Df~l~~Y~~~~~ik~~~av 268 (268)
T COG0207 223 QLKREPRPLPKLVINPKDKDLFDFTFEDFELVGYDPHPAIKAPVAV 268 (268)
T ss_pred HhccCCCCCCeEEecCCccccccccccceEEECCCCCccccccccC
Confidence 9999999999999999778889999999999999999999999997
No 7
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=100.00 E-value=3.3e-76 Score=592.85 Aligned_cols=255 Identities=57% Similarity=0.989 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCcccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (513)
|++|+++|++|+++|+.+.+|||++|+++||++++||++++||++|+|+++|+++++|++||++|++|+++|+++++++|
T Consensus 1 ~~~Y~~l~~~Il~~G~~~~~rtg~~t~~~~~~~~~~d~~~~~p~lt~k~~~~~~~~~EllW~l~Gs~d~~~l~~~~~~iw 80 (269)
T PF00303_consen 1 EKQYLDLLKKILENGEFREDRTGVGTKELFGVQLRIDPRKRFPLLTTKKVNWKSAIAELLWYLSGSNDVDFLREYGPKIW 80 (269)
T ss_dssp HHHHHHHHHHHHHHTEEEESTTSSEEEEEEEEEEEEECGGS-SSSSSST-HHHHHHHHHHHHHTT-SBHHHHHTTT-HTT
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCcEEEECcceEEEcCCCCCccccccccccchhHHHHHHHHHcCccHHHHHhhccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcccccc
Q 010303 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (513)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~ 403 (513)
+.|+.++| ++|++|++||.|||+|++.+ +| +.++|||++||++||+||+|||+++++|||.++++
T Consensus 81 d~~~~~~~---------~~g~~g~~YG~~~r~~~~~~-----~~-~~~~dQl~~vi~~Lk~~p~sRR~vi~~w~p~~~~~ 145 (269)
T PF00303_consen 81 DFWADKDY---------EEGDLGPAYGPRWRHWGAPY-----DY-GFGFDQLEWVIEKLKNNPDSRRAVISIWNPSDDDE 145 (269)
T ss_dssp HGGHSHHH---------HTTB-SSSHHHHHHHBTSTE-----TT-TSSBEHHHHHHHHHHHSTTSSTEEEEC--TTTGGG
T ss_pred cccccccc---------ccCcccCCCCceeeeccccc-----cC-CccHHHHHHHHHHHhcCCCchhheeeeCCHhHhcC
Confidence 99986543 36999999999999998653 34 67899999999999999999999999999999999
Q ss_pred CCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHh
Q 010303 404 MALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 469 (513)
Q Consensus 404 ~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 469 (513)
++|+|||.++ |||||+++|+|+|+++|++||++||++||+++|+|+|+++|+|||++|++++++||
T Consensus 146 ~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~~~l 225 (269)
T PF00303_consen 146 MADPPCHQSIQFYVRDGKLNLTVYQRSNDAFLGLPFNIFQYALLQEMIARELGLKPGTYTHFIGSAHIYENHIDAAKEQL 225 (269)
T ss_dssp SSS--SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCceeeeEEEEECCEEEEEEEeecchhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEcccEeeHhHHHHHHHHH
Confidence 9999999876 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 470 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 470 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+|+|+++|+|+++++.++|+||+++||+|+||+|||+|||||||
T Consensus 226 ~~~~~~~p~l~~~~~~~~~~~~~~~d~~l~~Y~~~~~i~~~~av 269 (269)
T PF00303_consen 226 KREPYPFPKLEINPEKKSIDDFKPEDFKLEGYQPHPKIKFEMAV 269 (269)
T ss_dssp TS---S--EEEESSTHSSGGGH-GGGEEEES---SS--SSSSTE
T ss_pred hcCCCCCCEEEeCCCCCChhhCchhhEEEeCCCCCCCCCccccC
Confidence 99999999999999999999999999999999999999999997
No 8
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=100.00 E-value=3.7e-60 Score=462.00 Aligned_cols=200 Identities=63% Similarity=1.083 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHcCccc-cCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCccccC
Q 010303 246 LYLRLVQDIISDGNLK-DDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (513)
Q Consensus 246 ~Yl~l~~~Il~~G~~~-~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW~ 324 (513)
+|++++++|+++|..+ .+|||++|+++||++++||++++||++|+||++|+++++|++||++|++|+++|+++++++|+
T Consensus 1 ~y~~~~~~il~~g~~~~~~Rtg~~t~~~~g~~~~~~~~~~~p~~t~k~~~~~~~i~Ellw~l~G~~~~~~l~~~~~~iw~ 80 (215)
T cd00351 1 QYLDLWRKILEEGYRKTDDRTGTGTRSLFGAQLRFDLSEGFPLLTTKKVPWKSAIEELLWFLRGDTNAERLKEYGVSIWD 80 (215)
T ss_pred CHHHHHHHHHHhCCeecCCCCCCceEEEeeeEEEEECccCccccccCCCCchhhhhhhhhhhcCCccHHHHHHhCccccc
Confidence 5999999999999998 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccccccC
Q 010303 325 GNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLM 404 (513)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~ 404 (513)
+|+ .++|++|++||.|||+|++. ++++|||++||++||+||+|||+|+++|||.++.+|
T Consensus 81 ~~~------------~~~g~~g~~YG~r~r~~~~~---------~~~~dQi~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~ 139 (215)
T cd00351 81 EWA------------SKEGDLGYTYGFQWRHWGAP---------GQGVDQIEKVIEKLKNNPDSRRAIISAWNPADLDLM 139 (215)
T ss_pred ccc------------ccCCCCCCChhhheeecCCC---------CCChHHHHHHHHHHhcCCCchheEEEecChhhcccc
Confidence 996 24699999999999999752 567999999999999999999999999999999999
Q ss_pred CCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHH
Q 010303 405 ALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 466 (513)
Q Consensus 405 ~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~ 466 (513)
+|||||.++ |||+|+++|+|+|+++|++|++|||++||+++|+|+|+++|+|||++|+++|+
T Consensus 140 ~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~~~N~~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~ 215 (215)
T cd00351 140 ALPPCHTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASYALLTEMIARVTGLEPGEFIHTIGDAHIYENHLEQVK 215 (215)
T ss_pred CCCCceEEEEEEEeCCEEEEEEEehhhhhhhhhhhhHHHHHHHHHHHHHhcCCEeEEEEEEEEEEEEehhhHhhhC
Confidence 999999876 99999999999999999999999999999999999999999999999999874
No 9
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.5e-43 Score=322.21 Aligned_cols=181 Identities=55% Similarity=0.936 Sum_probs=157.7
Q ss_pred CceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010303 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (513)
Q Consensus 21 mrki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~ 100 (513)
|+.+.++||++.+++||++|+|||++|.||+||+++|+++++|++.|+||||||||||+|.+.+||++|.||||||+...
T Consensus 1 ~~~~~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~ 80 (190)
T KOG1324|consen 1 MRLLNLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKE 80 (190)
T ss_pred CceeEEEEEEccccCcccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcccCCCCCceEEEEecccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceee
Q 010303 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180 (513)
Q Consensus 101 ~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~ 180 (513)
+....++++++.+++.|++.|.+.++....+.||||||+++|+++|+++.||++++|+|...++||+|||.+|.+.++.+
T Consensus 81 ~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~ 160 (190)
T KOG1324|consen 81 DFAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKW 160 (190)
T ss_pred CcCCccCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEEEEecccCCcccccccCChHHhchh
Confidence 43355679999999999999998877778899999999999999999999999999999999999999999998766654
Q ss_pred eeecCcccCCccEEEEEEEEc
Q 010303 181 YSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
.......+++.++++..+-|.
T Consensus 161 ~~~~pv~~~~~~~~~e~~lk~ 181 (190)
T KOG1324|consen 161 DKLFPVSENGLRVQEETFLKP 181 (190)
T ss_pred hhcCcccccccchhhhcCccc
Confidence 332223344444444444443
No 10
>PRK00956 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=3.8e-42 Score=333.54 Aligned_cols=185 Identities=24% Similarity=0.314 Sum_probs=161.5
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEe-CCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcC
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYN-LRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~d-l~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (513)
++..++|..++++|+++|..+++++|..++++.|..++++ ++.+ +++ .
T Consensus 8 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-------~i~------------------------~ 56 (208)
T PRK00956 8 KSVASAWERLVPKIMNEGEEITDERGSKTKEIMNTIIEITNPKLK-------SIP------------------------E 56 (208)
T ss_pred CCHHHHHHHHHHHHHhCCcEeeCCCCceEEEEeceEEEEcCCccC-------CCC------------------------C
Confidence 5789999999999999999999988999999999999994 3322 111 1
Q ss_pred ccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcc
Q 010303 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (513)
Q Consensus 320 ~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~ 399 (513)
...|+.|+.++|.+.+ + ..+.++++++||.|||+|++ ..|||++||++|+++|+|||+|+++|||.
T Consensus 57 ~~~~~~~~~~~y~~~~-~-~g~~~~~~~~YG~r~r~~~~------------~~dQi~~vI~~L~~~p~sRR~i~~~w~p~ 122 (208)
T PRK00956 57 KYPLGEEALEEYTKQL-L-SGSAQGFVYTYGERLREYPG------------EVDQIDYIIEKLKENKNSRRATAVTWNPY 122 (208)
T ss_pred CCCcchHHHHHHHHhc-c-CCccCccCCCHHHHHhcCCC------------hhHHHHHHHHHHhcCCCchheEEEEeCch
Confidence 2346666666676653 2 23456699999999999974 25999999999999999999999999999
Q ss_pred ccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhH
Q 010303 400 DLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 465 (513)
Q Consensus 400 ~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 465 (513)
++.++++||||.++ |||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|++++
T Consensus 123 ~d~~~~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~v 202 (208)
T PRK00956 123 IDTKVDEVPCLQLVDFLIRDGKLYLTVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVSAHIYERDWDYL 202 (208)
T ss_pred hhhhcCCCCCeEEEEEEEeCCEEEEEEEEhhhhhhcccchHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHH
Confidence 99999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 010303 466 EEQLQ 470 (513)
Q Consensus 466 ~~~l~ 470 (513)
+++|+
T Consensus 203 ~~~l~ 207 (208)
T PRK00956 203 EKIFK 207 (208)
T ss_pred HHHhc
Confidence 99986
No 11
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=100.00 E-value=2.8e-41 Score=315.39 Aligned_cols=159 Identities=48% Similarity=0.804 Sum_probs=143.8
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~ 102 (513)
+|.+|+|++.||+||.+|+|||++|+||++|+++|+ +++||||||||||+| .+|||+|.||||||+...
T Consensus 1 mi~lI~A~~~n~~IG~~~~lPW~~p~Dl~~Fk~~T~-------~~~vIMGrkT~eslp--~~pLp~R~niVlSr~~~~-- 69 (161)
T PF00186_consen 1 MISLIVAVDKNGGIGKDGKLPWHLPEDLKFFKKLTT-------GNPVIMGRKTFESLP--FRPLPGRINIVLSRNPDY-- 69 (161)
T ss_dssp -EEEEEEEETTSEEEBTTBSSSSSHHHHHHHHHHHT-------TCEEEEEHHHHHHST--GSSBTTSEEEEESSSTTS--
T ss_pred CEEEEEEECCCCcccCCCccccccHHHHHHHHHccC-------CccEEEeeCchhcCC--ccCCCCCeEEEEEcCccc--
Confidence 589999999999999999999999999999999998 899999999999998 369999999999999864
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeee
Q 010303 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (513)
Q Consensus 103 ~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (513)
..+++.+++|+++|++.++.. .++||||||++||+++| ++||++|||+|+..++||+|||.++.+.|++++.
T Consensus 70 -~~~~~~~~~s~~~al~~~~~~-----~~~i~ViGG~~iy~~~l--~~~d~l~lT~I~~~~~~D~~fP~~d~~~~~~~~~ 141 (161)
T PF00186_consen 70 -EPEGVEVVSSLEEALELAKDK-----DEEIFVIGGAEIYEQFL--PYADRLYLTRIDGDFEGDTFFPEIDESEFKLVSE 141 (161)
T ss_dssp -CTTTSEEESSHHHHHHHHTTS-----ESEEEEEE-HHHHHHHH--HGESEEEEEEESSESTTSEECSSCCTTTEEEEEE
T ss_pred -ccCCceeeCCHHHHHHHhhcc-----CCcEEEECCHHHHHHHH--HhCCeEEEEEEcCccccceECCCCChHHCEEEEE
Confidence 335888999999999966543 47999999999999999 7999999999999999999999999999999977
Q ss_pred ecCc--ccCCccEEEEEEEE
Q 010303 183 SFPI--VENNIRYCLSTYVR 200 (513)
Q Consensus 183 ~~~~--~e~~~~~~f~~Y~r 200 (513)
+... +++++.|+|++|+|
T Consensus 142 ~~~~~~~~~~~~~~f~~y~R 161 (161)
T PF00186_consen 142 EEHPKDEENGIKYTFVTYER 161 (161)
T ss_dssp EEEEHBEETTSEEEEEEEEE
T ss_pred EecccCCCCCCCEEEEEEEC
Confidence 6544 67999999999997
No 12
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=100.00 E-value=3.9e-40 Score=317.15 Aligned_cols=178 Identities=22% Similarity=0.325 Sum_probs=149.7
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEe-CCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcC
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYN-LRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~d-l~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (513)
++..++|..++++|+++|..++++.|..++++.|..++++ ++.+ +++-.
T Consensus 6 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-------~~~~~----------------------- 55 (199)
T TIGR03283 6 RSIAQAWRELVTKIMVEGEVVEDERGSLTKEVRNLIIHIENPGPE-------KIPEG----------------------- 55 (199)
T ss_pred CCHHHHHHHHHHHHHhCCeEeeCCCCceEEEEeceEEEEcCCccc-------CcCcc-----------------------
Confidence 5788999999999999999999988999999999999994 4433 11111
Q ss_pred ccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcc
Q 010303 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (513)
Q Consensus 320 ~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~ 399 (513)
..|..+..++|.+.+ +. .++..++++||.|||+|+ ++|||++||++||++|+|||+|+++|||.
T Consensus 56 -~~~~~~~l~~Y~~~l-l~-~~~~~~~y~YG~r~r~~~-------------g~dQl~~vI~~Lk~~p~sRR~i~~~w~p~ 119 (199)
T TIGR03283 56 -YPLDEEKLEEYEKQL-LD-PERQGFVYTYGNRLRRYF-------------GIDQIDYIIERLNQSPNSRRAIAITWDPP 119 (199)
T ss_pred -CcccHHHHHHHHHHH-cC-CCcCCCCcCHHHHHHcCC-------------ChhHHHHHHHHHhcCCCccceeEEEECcc
Confidence 112222223333332 21 234559999999999985 58999999999999999999999999999
Q ss_pred ccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhh
Q 010303 400 DLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 464 (513)
Q Consensus 400 ~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~ 464 (513)
++.++++||||.++ |||||+++|+|+|+++|++||+|||++||+++|+|+|+++|+|||++|++.
T Consensus 120 ~d~~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIYe~d~~~ 198 (199)
T TIGR03283 120 QDIKVDEVPCLQLVQFLIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVEPGTLTTHAISAHIYERDFDE 198 (199)
T ss_pred hhcccCCCCCcEEEEEEEeCCEEEEEEEEhhhhhhchhhhHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEecccccc
Confidence 98899999999876 999999999999999999999999999999999999999999999999985
No 13
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=1.9e-39 Score=302.44 Aligned_cols=156 Identities=35% Similarity=0.662 Sum_probs=139.6
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010303 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (513)
Q Consensus 24 i~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~ 103 (513)
|.+|+|++.||+||.+|+|||++|+||+||+++|+ +++|||||||||++| +|||+|+|||+||+..
T Consensus 2 i~~I~A~~~~~~IG~~~~lPW~~~~D~~~Fk~~T~-------~~~vIMGRkTyes~~---~plp~r~~iVlSr~~~---- 67 (159)
T PRK10769 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIVISSQPG---- 67 (159)
T ss_pred EEEEEEECCCCcEecCCCcCcCCHHHHHHHHHHhC-------CCeEEEeHHHHHhhh---hhcCCCcEEEECCCCC----
Confidence 78999999999999999999999999999999998 899999999999997 6999999999999763
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeeee
Q 010303 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (513)
Q Consensus 104 ~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (513)
..+++.++++++++++.+++ .++||||||+++|++|| ++||+++||+||..++||+|||.++.+.|++++.+
T Consensus 68 ~~~~v~~~~~l~~~l~~~~~------~~~I~viGG~~iy~~~l--~~~Del~lT~i~~~~~gD~~fP~~~~~~~~~~~~~ 139 (159)
T PRK10769 68 TDDRVTWVKSVDEALAAAGD------VPEIMVIGGGRVYEQFL--PKAQRLYLTHIDAEVEGDTHFPDYEPDEWESVFSE 139 (159)
T ss_pred CCCCEEEECCHHHHHHHhcC------CCCEEEECcHHHHHHHH--HHCCEEEEEEECccccCCEECCCCChHHCEEEEEE
Confidence 24578888899999986653 36899999999999999 66999999999999999999999998889998655
Q ss_pred cC--cccCCccEEEEEEEEc
Q 010303 184 FP--IVENNIRYCLSTYVRV 201 (513)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (513)
.. .++|++.|+|.+|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T PRK10769 140 FHDADEQNSHSYCFEILERR 159 (159)
T ss_pred eccccCCCCccEEEEEEEeC
Confidence 43 3577889999999983
No 14
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-36 Score=283.01 Aligned_cols=164 Identities=40% Similarity=0.589 Sum_probs=144.5
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~ 102 (513)
+|++|+|+|+||+||.+|+|||++|+|+++|++.|. ++.|||||||||+++...+||++|+|||+||+...
T Consensus 1 ~i~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~-------~~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~-- 71 (167)
T COG0262 1 MIILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTL-------GKPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDL-- 71 (167)
T ss_pred CEEEEEEEcCCCeeecCCCCCCCChhHHHHHHHhhC-------CCCEEEccchhhhccccCCCCCCCeEEEEecCccc--
Confidence 489999999999999999999999999999999997 67799999999999865569999999999999543
Q ss_pred CCCCC-EEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCCccCCCCCCCCceee
Q 010303 103 ATVEN-VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDSSVFQPW 180 (513)
Q Consensus 103 ~~~~~-v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~-~GD~fFP~~~~~~f~l~ 180 (513)
..++ +.+++|+++|+..+++.. +++|||+||+++|++|++++++|+++||+||..+ +||+|||..+...|+++
T Consensus 72 -~~e~~~~v~~s~~~al~~~~~~~----~~~i~IiGG~~l~~~~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~ 146 (167)
T COG0262 72 -KTEGGVEVVDSIEEALLLLLKEE----GEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELV 146 (167)
T ss_pred -ccCCCEEEeCCHHHHHHHHhhcC----CCeEEEEcCHHHHHHHhccccccEEEEEEeeeeccCCCccCCCCCccceEEe
Confidence 4456 999999999999998752 6899999999999999988899999999999999 99999999777889998
Q ss_pred eeecCcccCCccEEEEEEEE
Q 010303 181 YSSFPIVENNIRYCLSTYVR 200 (513)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r 200 (513)
........+.+.++|..|+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~ 166 (167)
T COG0262 147 SSEDADEKGGYFYTFESYER 166 (167)
T ss_pred eeeecccCCceeEEEEEeec
Confidence 76533455666778877765
No 15
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.97 E-value=8.4e-31 Score=244.15 Aligned_cols=158 Identities=45% Similarity=0.720 Sum_probs=135.7
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010303 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (513)
Q Consensus 24 i~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~ 103 (513)
|++++|+|+||+||.++++||++++|+++|++.+. ++++||||+||++++. +|+|+|.++|+||++.. .
T Consensus 1 i~~~~a~sldG~i~~~~~~~W~~~~d~~~f~~~~~-------~~~ivmGR~Tye~~~~--~~~~~~~~~V~S~~~~~--~ 69 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTT-------GNPVIMGRKTFESIPR--RPLPGRTNIVLSRQLDY--Q 69 (158)
T ss_pred CEEEEEECCCCceeCCCCcCcCCHHHHHHHHHHHC-------CCeEEEChhhHhhCCC--cCCCCCCEEEEccCCCc--C
Confidence 57899999999999977799999999999998886 7999999999999974 68999999999999754 1
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeeee
Q 010303 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (513)
Q Consensus 104 ~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (513)
.++++.++.+++++++.++ . .+++|||+||+++|++|+++ +||++|+++|..++|+++||..+...|++++.+
T Consensus 70 ~~~~~~~~~~~~~~v~~lk-~----~~~~I~v~GG~~l~~~~l~~--iDe~~l~v~pv~~~G~~~f~~~~~~~l~l~~~~ 142 (158)
T cd00209 70 DAEGVEVVHSLEEALELAE-N----TVEEIFVIGGAEIYKQALPY--ADRLYLTRIHAEFEGDTFFPEIDESEWELVSEE 142 (158)
T ss_pred CCCCeEEECCHHHHHHHHh-c----CCCeEEEECcHHHHHHHHhh--CCEEEEEEECCcccCCEECCCCCchhcEEEEEE
Confidence 3567888889999999998 3 25799999999999999966 999999999999999999998765679998733
Q ss_pred cCcccCCccEEEEEEE
Q 010303 184 FPIVENNIRYCLSTYV 199 (513)
Q Consensus 184 ~~~~e~~~~~~f~~Y~ 199 (513)
.....++.+|.|.+|.
T Consensus 143 ~~~~~~~~~~~~~~~~ 158 (158)
T cd00209 143 EVFEEDGYSYTFETYE 158 (158)
T ss_pred eecccCCccEEEEEEC
Confidence 3334455688988873
No 16
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=99.97 E-value=5.4e-31 Score=284.47 Aligned_cols=155 Identities=17% Similarity=0.438 Sum_probs=132.4
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010303 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (513)
Q Consensus 24 i~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~ 103 (513)
|++|||++.||+||.+|.||||+|+||+||+++|+ +++||||||||||++ .|||+|+|||+||+......
T Consensus 2 i~lI~A~~~n~~IG~~~~LPW~~peDl~~Fk~~T~-------~~tVVMGRkTyEsi~---~~Lp~R~niVlSr~~~~~~~ 71 (505)
T PRK00478 2 IKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTT-------NHTIVMGYNTFQAMN---KILANQANIVISKKHQRELK 71 (505)
T ss_pred EEEEEEECCCCcccCCCCCCCCCHHHHHHHHHHhC-------CCeEEEehHHHHhhh---hcCCCCeEEEECCCCccccC
Confidence 88999999999999999999999999999999998 899999999999997 48999999999998743211
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeeee
Q 010303 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (513)
Q Consensus 104 ~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (513)
..+++.+++|++++++... +++||||||++||++|+ ++||+++||+||+.++||+|| .++...|+++...
T Consensus 72 ~~~~v~v~~sl~~~L~~~~-------~~dI~IIGG~~Ly~~~l--~~vDel~lT~Ip~~~g~d~~f-~~~~~~~~Lv~~~ 141 (505)
T PRK00478 72 NNNELFVFNDLKKLLIDFS-------NVDLFIIGGKKTIEQFI--KYADQLIISKLNADYKCDLFV-NLNYDDFSLVQTK 141 (505)
T ss_pred CCCCeEEECCHHHHHHhCC-------CCCEEEEChHHHHHHHH--HhCCEEEEEEeccccCCCCCC-CCChhhheeeeeE
Confidence 2357889999999976431 35899999999999999 679999999999999999998 4556689887553
Q ss_pred cCcccCCccEEEEEEEEccc
Q 010303 184 FPIVENNIRYCLSTYVRVRS 203 (513)
Q Consensus 184 ~~~~e~~~~~~f~~Y~r~~~ 203 (513)
. ...+.+++|.|+.+
T Consensus 142 ~-----~~~~v~~~Y~rk~~ 156 (505)
T PRK00478 142 E-----YDQFVVEYWEKKPN 156 (505)
T ss_pred E-----cCcEEEEEEEecCC
Confidence 2 22489999999844
No 17
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.62 E-value=4.2e-15 Score=142.97 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=111.2
Q ss_pred ceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccccCC----CCCCC---------
Q 010303 22 RSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL----EHRPL--------- 86 (513)
Q Consensus 22 rki~livAvs~dG~IG~-~g~LpW~~-peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~----~~~pl--------- 86 (513)
|++++.+|+|+||+|+. +++..|.. ++|.+++.++... .+++||||+|++.... ...+.
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~------~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~ 74 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSE------ADAILVGRNTVRADNPSLTVRWPGDPPPRERGRA 74 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHH------CSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCH
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhh------CCEEEeccchhhhcCccccccCccccchhhhhhc
Confidence 58999999999999976 88899974 5566777777642 7899999999986521 01111
Q ss_pred CCCcEEEEcCCCCCCCC----C-CCCE-EEECC---------------HHHHHHHHHcCCCCCCCCcEEEEecHHHHHHH
Q 010303 87 PGRLNVVLTRSGSFDIA----T-VENV-VICGS---------------IGSALELLAASPYCLSIEKVFVIGGGQILSEA 145 (513)
Q Consensus 87 ~~R~~iVlSrt~~~~~~----~-~~~v-~v~~s---------------leeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~ 145 (513)
+..+.||+|++...... . ...+ +++.. ++++++.|++. +.++|+|.||+++..+|
T Consensus 75 ~~p~~vV~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~----g~~~i~v~GG~~l~~~~ 150 (200)
T PF01872_consen 75 KQPPKVVVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLRVRVDLEEALRRLKER----GGKDILVEGGGSLNGSF 150 (200)
T ss_dssp SSSEEEEEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT----TTSEEEEEEHHHHHHHH
T ss_pred cCCeEEEEecccccccccccccCCCceEEEeecccccccccceEEecCHHHHHHHHHhc----CCCEEEEechHHHHHHH
Confidence 45679999998752110 0 1122 33333 99999999987 47999999999999999
Q ss_pred hcCCCcCEEEEEEECccc-c-CCccCCCCCCC--Cceeeee
Q 010303 146 LNAPECDAIHITEIETRI-E-CDTFIPSIDSS--VFQPWYS 182 (513)
Q Consensus 146 L~~~lvDel~LT~I~~~~-~-GD~fFP~~~~~--~f~l~~~ 182 (513)
++++++||++|++.|..+ . |.++|+..... .|++++.
T Consensus 151 l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~~~l~l~~~ 191 (200)
T PF01872_consen 151 LRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRSLRLELVSV 191 (200)
T ss_dssp HHTT--SEEEEEEESEE-SSTSEESSTSSTSSSEEEEEEEE
T ss_pred HhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcccceEEEEE
Confidence 999999999999999888 4 67899887654 4777654
No 18
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=99.43 E-value=5.1e-12 Score=123.52 Aligned_cols=165 Identities=16% Similarity=0.125 Sum_probs=109.3
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccC----C-----C-------
Q 010303 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----L-----E------- 82 (513)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~LpW~-~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp----~-----~------- 82 (513)
.+.+++.+|+|+||.|+. +|.- |. -+++..++.++-.. .++|+||++|++.-- . +
T Consensus 2 rP~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~------~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~ 74 (217)
T PRK05625 2 RPYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAE------VDAVMVGIGTVLADDPSLTVHRYAAGKPENPIR 74 (217)
T ss_pred CCEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHH------CCEEEEccceEEccCCcceeeeccCCCCCCCEE
Confidence 357889999999999976 6666 97 45666666666542 789999999999620 0 0
Q ss_pred ------------CCCCC-CCcEEEEcCCCCCCCC----CCCCEEEE------CCHHHHHHHHHcCCCCCCCCcEEEEecH
Q 010303 83 ------------HRPLP-GRLNVVLTRSGSFDIA----TVENVVIC------GSIGSALELLAASPYCLSIEKVFVIGGG 139 (513)
Q Consensus 83 ------------~~pl~-~R~~iVlSrt~~~~~~----~~~~v~v~------~sleeai~~l~~~~~~~~~~~I~ViGG~ 139 (513)
.+.+. ..+.+|+|+....... ...++.+. -++.++++.|++. +.++|||.||+
T Consensus 75 vVld~~~~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 150 (217)
T PRK05625 75 VVVDSSARTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER----GIKRLMVEGGG 150 (217)
T ss_pred EEECCCCCCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEecCH
Confidence 00111 1344555543210000 01122222 3789999999876 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECcccc---CCccCCCCC------CCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 140 QILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 140 ~Iy~~~L~~~lvDel~LT~I~~~~~---GD~fFP~~~------~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
++..+|++++++||+++++.|..+. |.++|+... ...|++.+.. ..++++ +.+|.++
T Consensus 151 ~l~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~--~~~~~~---~l~y~~~ 216 (217)
T PRK05625 151 TLIWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLELAKVC--RCDEGV---VLTYKVK 216 (217)
T ss_pred HHHHHHHHCCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEEeEEE--EECCEE---EEEEEEc
Confidence 9999999999999999999998875 667887531 1256665432 234433 4778764
No 19
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=99.40 E-value=8.4e-12 Score=121.57 Aligned_cols=140 Identities=17% Similarity=0.228 Sum_probs=97.5
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCC-------CCC--
Q 010303 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLE-------HRP-- 85 (513)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~LpW~-~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyes----lp~~-------~~p-- 85 (513)
.+.+.+.+|+|+||+|+. +|...|. -+++..++.++-. ..++|||||+||+. +... ..|
T Consensus 2 rP~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~------~~DailvG~~T~~~d~p~l~~r~~~~~~~~~P~~ 75 (216)
T TIGR00227 2 RPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRA------QSDAILVGSGTVLADDPRLTVRWVELDELRNPVR 75 (216)
T ss_pred CCEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHh------HcCEEEECcCeEeccCCcceeeccCcccCCCCeE
Confidence 357899999999999986 7888896 4566666666554 27899999999996 2110 001
Q ss_pred ---------------CC-CCcEEEEcCCCCCCCC----CCCCEEE----EC--CHHHHHHHHHcCCCCCCCCcEEEEecH
Q 010303 86 ---------------LP-GRLNVVLTRSGSFDIA----TVENVVI----CG--SIGSALELLAASPYCLSIEKVFVIGGG 139 (513)
Q Consensus 86 ---------------l~-~R~~iVlSrt~~~~~~----~~~~v~v----~~--sleeai~~l~~~~~~~~~~~I~ViGG~ 139 (513)
+. ..+.+|+|++...... ...++.+ .. ++.++++.|++. +.++|+|.||+
T Consensus 76 vv~~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~----g~~~llveGG~ 151 (216)
T TIGR00227 76 VVLDSQLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEE----GINSVMVEGGG 151 (216)
T ss_pred EEECCCCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHc----CCCEEEEeeCH
Confidence 11 1345555543311000 0112322 23 799999999876 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECcccc---CCccCC
Q 010303 140 QILSEALNAPECDAIHITEIETRIE---CDTFIP 170 (513)
Q Consensus 140 ~Iy~~~L~~~lvDel~LT~I~~~~~---GD~fFP 170 (513)
++..+|++++++||+++++.|..+. |.++|.
T Consensus 152 ~L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~ 185 (216)
T TIGR00227 152 TLNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVD 185 (216)
T ss_pred HHHHHHHHCCCCCEEEEEECchhhCCCCCcCccC
Confidence 9999999999999999999998885 555553
No 20
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.25 E-value=4.2e-11 Score=125.12 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=95.2
Q ss_pred CCCCceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCCCCCC-C---
Q 010303 18 PNPKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRPL-P--- 87 (513)
Q Consensus 18 ~~~mrki~livAvs~dG~IG~-~g~LpW~~-peD~~~F~~~T~~~~~~~~~~~vIMGRkTyes----lp~~~~pl-~--- 87 (513)
...-+-+++.+|+|+||+|+. +|...|.- +++..++.++... .+++||||+||+. +.. .||- +
T Consensus 137 ~~~rP~v~~~~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~------~DailvG~~T~~~d~p~l~~-r~~~~~~~P 209 (344)
T TIGR00326 137 RTGLPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ------SDAILVGGGTVKADNPALTA-RLDEATEQP 209 (344)
T ss_pred hcCCCEEEEEEeeCCCCCccccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhHhHhCCcccc-cCCCCCCCC
Confidence 334567999999999999986 88889974 4455566555432 7899999999994 211 1111 0
Q ss_pred --------------------CCcEEEEcCCCCC-CCCCCCCEEEE----CCHHHHHHHHHcCCCCCCCCcEEEEecHHHH
Q 010303 88 --------------------GRLNVVLTRSGSF-DIATVENVVIC----GSIGSALELLAASPYCLSIEKVFVIGGGQIL 142 (513)
Q Consensus 88 --------------------~R~~iVlSrt~~~-~~~~~~~v~v~----~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy 142 (513)
..+.+|+|++... ......++.+. .|+.++++.|++. +.++|+|.||+.+.
T Consensus 210 ~~vV~d~~~~~~~~~~~~~~~~~~~V~s~~~~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~----g~~~ilveGG~~L~ 285 (344)
T TIGR00326 210 LRVVLDTQLRIPEFAKLIPQIAPTWIFTTARDKKKRLEAFEVNIFPLEKVTIREVMTQLGKR----GINSVLVEGGPNLL 285 (344)
T ss_pred eEEEEcCCCCCCCcchhhcCCCCEEEEECChhhhhHHhhCCeEEecCCCCCHHHHHHHHHhC----CCCEEEEeeHHHHH
Confidence 2244555543210 00001122222 2899999999875 57899999999999
Q ss_pred HHHhcCCCcCEEEEEEECccccC
Q 010303 143 SEALNAPECDAIHITEIETRIEC 165 (513)
Q Consensus 143 ~~~L~~~lvDel~LT~I~~~~~G 165 (513)
.+|++++++||+++++.|..+.+
T Consensus 286 ~~ll~~gLVDEl~l~i~P~ilG~ 308 (344)
T TIGR00326 286 GSFLDEGLVDELIIYIAPKLLGG 308 (344)
T ss_pred HHHHHCCCCeEEEEEEccEEecC
Confidence 99999999999999999987753
No 21
>PRK14059 hypothetical protein; Provisional
Probab=99.01 E-value=4e-08 Score=98.58 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=113.3
Q ss_pred CCceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCC---C----------C
Q 010303 20 PKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH---R----------P 85 (513)
Q Consensus 20 ~mrki~livAvs~dG~IG~~g~LpW~-~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~---~----------p 85 (513)
..+-+.+.+|+|+||.|+.+|.=-|. -+++.+++.++-. +.++|+.|.+|-..=-... . -
T Consensus 29 ~rP~V~lk~A~SlDGkia~~g~s~~It~~~~r~~~h~lRa------~~DAIlVG~~Tv~~DnP~L~r~~~~~~~~R~~~g 102 (251)
T PRK14059 29 DRPWLRANFVTSLDGAATVDGRSGGLGGPADRRVFGLLRA------LADVVVVGAGTVRAENYGGVRLSAAARQQRQARG 102 (251)
T ss_pred CCCeEEEEEEEcCcccccCCCCCcCcCCHHHHHHHHHHHH------HCCEEEEchhhhhhcCccccccCHHHHHHHHhcC
Confidence 45789999999999999977776786 4777777777665 3789999999986321000 0 0
Q ss_pred C-CCCcEEEEcCCCCCCCC-----------------------------CCCCEEE-E-----CCHHHHHHHHHcCCCCCC
Q 010303 86 L-PGRLNVVLTRSGSFDIA-----------------------------TVENVVI-C-----GSIGSALELLAASPYCLS 129 (513)
Q Consensus 86 l-~~R~~iVlSrt~~~~~~-----------------------------~~~~v~v-~-----~sleeai~~l~~~~~~~~ 129 (513)
. +.-+.||++++...... ...++.+ . -|+.++++.|++. +
T Consensus 103 ~~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~----g 178 (251)
T PRK14059 103 QAEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR----G 178 (251)
T ss_pred CCCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhC----C
Confidence 0 11234666654322000 0001211 1 2788889999875 5
Q ss_pred CCcEEEEecHHHHHHHhcCCCcCEEEEEEECcccc-C-CccCCCC--CCCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 130 IEKVFVIGGGQILSEALNAPECDAIHITEIETRIE-C-DTFIPSI--DSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 130 ~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~-G-D~fFP~~--~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
.++|||.||+.+..+|++++++||+++++.|..+. | -++|+.. ....|++.+... ..+ +..+.+|++.
T Consensus 179 ~~~vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~~~~~~l~L~~~~~--~~~--g~v~l~Y~~~ 250 (251)
T PRK14059 179 LRRILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGPGQAPTRMRLAHVLT--DDD--GYLFLRYVRA 250 (251)
T ss_pred CCEEEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCCCCCCcCeEEEEEEE--cCC--CEEEEEEEeC
Confidence 78999999999999999999999999999998884 4 4677653 234677764432 234 4588999874
No 22
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=98.82 E-value=3.1e-07 Score=89.72 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=93.2
Q ss_pred eEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCCCCC-CCCCcEEEEc
Q 010303 23 SYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRP-LPGRLNVVLT 95 (513)
Q Consensus 23 ki~livAvs~dG~IG~-~g~LpW~-~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyes----lp~~~~p-l~~R~~iVlS 95 (513)
-+.+-+|+|+||.|+. +|+ -|. -+++.+++.++-.. .++|+.|..|-.. +...... -.....||++
T Consensus 2 ~V~lk~A~SlDGkia~~~g~-~~it~~~~r~~~h~lRa~------~DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld 74 (210)
T TIGR01508 2 YVIVNVAMSLDGKLATINRD-SRISCEEDLIRVHEIRAE------VDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVD 74 (210)
T ss_pred EEEEEEeecCcccccCCCCC-cCcCCHHHHHHHHHHHHH------CCEEEECcCeEEecCCcccccCcccCCCCEEEEEC
Confidence 3678899999999986 666 563 36777777777653 7899999999863 2111000 0112346666
Q ss_pred CCCCCCCC--------------------------CCCCE--EEEC----CHHHHHHHHHcCCCCCCCCcEEEEecHHHHH
Q 010303 96 RSGSFDIA--------------------------TVENV--VICG----SIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (513)
Q Consensus 96 rt~~~~~~--------------------------~~~~v--~v~~----sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~ 143 (513)
++...... ...++ ..+. ++.++++.|++. +.++|+|-||+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~~ 150 (210)
T TIGR01508 75 SKLRVPLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDK----GVRRLMVEGGGTLIW 150 (210)
T ss_pred CCCCCCCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEeeCHHHHH
Confidence 65422000 00112 1211 678888888765 578999999999999
Q ss_pred HHhcCCCcCEEEEEEECcccc---CCccCC
Q 010303 144 EALNAPECDAIHITEIETRIE---CDTFIP 170 (513)
Q Consensus 144 ~~L~~~lvDel~LT~I~~~~~---GD~fFP 170 (513)
+|++++++||+++++.|..+. +..+|.
T Consensus 151 ~fl~~~LvDel~l~i~P~ilG~~~~~~~~~ 180 (210)
T TIGR01508 151 SLFKENLVDEISVYIAPKIFGGRDAPTYVD 180 (210)
T ss_pred HHHHCCCCcEEEEEEcCEEEcCCCCcCccC
Confidence 999999999999999998885 344554
No 23
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.56 E-value=5.4e-06 Score=87.34 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=90.6
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCCCC---CCCCCcE
Q 010303 20 PKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHR---PLPGRLN 91 (513)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyes----lp~~~~---pl~~R~~ 91 (513)
..+-+.+-+|+|+||.||. +|.-...-+++.++..++-.. .++|++|..|-.. +-.... +-++-..
T Consensus 138 ~rP~V~lK~A~SLDGkIA~~~G~s~IT~~~ar~~vh~lRa~------~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~P~R 211 (360)
T PRK14719 138 MLPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKD------VDAIMVGIGTVLKDDPRLTVHKINASPKDNPLR 211 (360)
T ss_pred CCCeEEEEEEEcCcCcccCCCCCCCcCCHHHHHHHHHHHHH------CCEEEECcchHhhcCCCCccccccccCCCCCEE
Confidence 3677899999999999987 554333346777777776653 7899999999842 110000 0011223
Q ss_pred EEEcCCCCCCCC-----------------------------CCCCEEE-E-----CCHHHHHHHHHcCCCCCCCCcEEEE
Q 010303 92 VVLTRSGSFDIA-----------------------------TVENVVI-C-----GSIGSALELLAASPYCLSIEKVFVI 136 (513)
Q Consensus 92 iVlSrt~~~~~~-----------------------------~~~~v~v-~-----~sleeai~~l~~~~~~~~~~~I~Vi 136 (513)
||++++...... ...++.+ . -|+.++++.|.+. +...|||-
T Consensus 212 VVlD~~l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~----gi~svlVE 287 (360)
T PRK14719 212 IVVDSNLKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKM----GINKILLE 287 (360)
T ss_pred EEEeCCCCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhC----CCCEEEEE
Confidence 555544311000 0011211 1 1677888888765 57899999
Q ss_pred ecHHHHHHHhcCCCcCEEEEEEECccccC
Q 010303 137 GGGQILSEALNAPECDAIHITEIETRIEC 165 (513)
Q Consensus 137 GG~~Iy~~~L~~~lvDel~LT~I~~~~~G 165 (513)
||+++..+|++++++||+++++.|..+.|
T Consensus 288 GG~~l~~sfl~~~LvDel~l~iaP~ilGg 316 (360)
T PRK14719 288 GGGTLNWGMFKENLINEVRVYIAPKVFGG 316 (360)
T ss_pred eCHHHHHHHHHCCCceEEEEEEccEEECC
Confidence 99999999999999999999999988854
No 24
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=98.44 E-value=1.5e-05 Score=78.39 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=95.7
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEcccccccc-CC---CCCCC---CCCcE
Q 010303 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI-PL---EHRPL---PGRLN 91 (513)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~LpW~-~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyesl-p~---~~~pl---~~R~~ 91 (513)
.+.+.+-+|+|+||.||. +|+--|. -+++.+...++-.. .++|+.|..|-..= |. +.-.. .+-..
T Consensus 3 rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~------~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~r 76 (218)
T COG1985 3 RPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAE------SDAILVGSGTVLADNPSLTVRLPEGGEERNPVR 76 (218)
T ss_pred CCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHH------cCEEEECccEEEeeCCccccccCCCCccCCCEE
Confidence 457889999999999987 6666697 46666555555542 68999999998632 10 00011 23345
Q ss_pred EEEcCCCCCCC----C-CC---C------------------C--EEEEC----CHHHHHHHHHcCCCCCCCCcEEEEecH
Q 010303 92 VVLTRSGSFDI----A-TV---E------------------N--VVICG----SIGSALELLAASPYCLSIEKVFVIGGG 139 (513)
Q Consensus 92 iVlSrt~~~~~----~-~~---~------------------~--v~v~~----sleeai~~l~~~~~~~~~~~I~ViGG~ 139 (513)
||++++..... . .. + + +++++ |+..+++.|.+. +...|+|=||+
T Consensus 77 VIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~----~i~~vlvEGG~ 152 (218)
T COG1985 77 VILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAER----GINSVLVEGGA 152 (218)
T ss_pred EEECCCCcCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhC----CCcEEEEccCH
Confidence 66665532100 0 00 1 1 12222 578888888876 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECccccC--CccCCC
Q 010303 140 QILSEALNAPECDAIHITEIETRIEC--DTFIPS 171 (513)
Q Consensus 140 ~Iy~~~L~~~lvDel~LT~I~~~~~G--D~fFP~ 171 (513)
.+..+|+++++|||+.+++.|..+.| -+++..
T Consensus 153 ~L~~s~l~~glVDel~l~iaP~i~G~~~~~~~~~ 186 (218)
T COG1985 153 TLNGSFLEAGLVDELLLYIAPKILGGSARTLVGG 186 (218)
T ss_pred HHHHHHHHcCCCcEEEEEEechhhcCCCCccccC
Confidence 99999999999999999999988854 456553
No 25
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.32 E-value=1.3e-05 Score=84.82 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=97.0
Q ss_pred CCCCceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCC--C-C-C-----
Q 010303 18 PNPKRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH--R-P-L----- 86 (513)
Q Consensus 18 ~~~mrki~livAvs~dG~IG~-~g~LpW~-~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~--~-p-l----- 86 (513)
...-+-+.+-+|+|+||.|+. +|+--|. -++|.+++.++-. ..++|+.|..|-..=.... + + +
T Consensus 143 ~~~rP~V~~k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa------~~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~ 216 (367)
T PRK10786 143 RTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRA------QSHAILTSSATVLADDPALTVRWSELDAQTQ 216 (367)
T ss_pred hcccceEEEEEeecCCCCccCCCCcccccCCHHHHHHHHHHHh------HCCEEEECcChHhhcCCCccccccccccccc
Confidence 345667999999999999986 7776786 5788887777765 3799999999986321000 0 0 0
Q ss_pred --------CCCcEEEEcCCCCCCCC------C---------------CCCE---EEE-----CCHHHHHHHHHcCCCCCC
Q 010303 87 --------PGRLNVVLTRSGSFDIA------T---------------VENV---VIC-----GSIGSALELLAASPYCLS 129 (513)
Q Consensus 87 --------~~R~~iVlSrt~~~~~~------~---------------~~~v---~v~-----~sleeai~~l~~~~~~~~ 129 (513)
+.-..||++++...+.. . ..++ .+. -|+.++++.|.+. +
T Consensus 217 ~~~~~~~~~~P~rvV~d~~g~l~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~----G 292 (367)
T PRK10786 217 ALYPQENLRQPVRIVIDSQNRVTPEHRIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHLDLVVLMMQLGKQ----Q 292 (367)
T ss_pred cccccccCCCCcEEEEcCCCCCCchhhhhcCCCCEEEEEcCchhhhhhcCceEEEEeCCCCCcCHHHHHHHHHhC----C
Confidence 11235888887532100 0 0011 111 1677888888765 5
Q ss_pred CCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccC
Q 010303 130 IEKVFVIGGGQILSEALNAPECDAIHITEIETRIEC 165 (513)
Q Consensus 130 ~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~G 165 (513)
.++|||-||+.+..+|++++++||+++++.|..+.+
T Consensus 293 i~~l~veGG~~l~~~~l~~~lvDe~~~~~aP~~~G~ 328 (367)
T PRK10786 293 INSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGS 328 (367)
T ss_pred CCEEEEeeCHHHHHHHHHCCCccEEEEEEcceeccC
Confidence 889999999999999999999999999999988743
No 26
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=97.58 E-value=0.0015 Score=69.43 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=85.4
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEcccccccc-CC-CCC-C-CCCCcEEEE
Q 010303 20 PKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI-PL-EHR-P-LPGRLNVVL 94 (513)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyesl-p~-~~~-p-l~~R~~iVl 94 (513)
..+-+.+-+|+|+||.|+. .|.--|.-..+.+..+.. .++|+.| +|--.= |. .-+ | .++-..||+
T Consensus 174 ~rP~V~lK~A~SlDGkia~~~g~s~~~s~~~vh~lRa~---------~DAIlVG-~Tv~~DnP~Lt~R~~~~~~PiRVVl 243 (380)
T PLN02807 174 GKPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQLLQE---------YDAVILS-SALADADPLPLSQEAGAKQPLRIII 243 (380)
T ss_pred ccccEEEEEEEcCCCCeeCCCCCChhhhhHHHHHHHhh---------CCEEEEc-CEeeccCCCCccCCCCCCCCEEEEE
Confidence 4567899999999999986 444334322333333322 6899999 986421 10 001 1 112234777
Q ss_pred cCCCCCCC-------CCC-------------------CCEEEE--C--CHHHHHHHHHcCCCCCCCCcEEEEe------c
Q 010303 95 TRSGSFDI-------ATV-------------------ENVVIC--G--SIGSALELLAASPYCLSIEKVFVIG------G 138 (513)
Q Consensus 95 Srt~~~~~-------~~~-------------------~~v~v~--~--sleeai~~l~~~~~~~~~~~I~ViG------G 138 (513)
+++...+. ... .++.++ . ++.++++.|.+. +...|+|=| |
T Consensus 244 d~~l~~p~~~~i~~~~~~~~~iv~t~~~~~~~~~l~~~gv~vv~~~~~dl~~iL~~L~~~----Gi~svLVEGG~~~~~G 319 (380)
T PLN02807 244 ARSESSPLQIPSLREESAAKVLVLADKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQR----GLCSVLLDLRGNVGGL 319 (380)
T ss_pred cCCCCCCCcceecccCCCCCEEEEECCchhhHHHHHhCCeEEEECCCCCHHHHHHHHHHC----CCCEEEEecCCCCCCH
Confidence 76543210 000 011111 1 688888888765 589999999 8
Q ss_pred HHHHHHHhcCCCcCEEEEEEECccccC
Q 010303 139 GQILSEALNAPECDAIHITEIETRIEC 165 (513)
Q Consensus 139 ~~Iy~~~L~~~lvDel~LT~I~~~~~G 165 (513)
+++..+|++++++||+++++.|..+.+
T Consensus 320 ~~L~~sfl~~~LvDei~~yiAP~ilG~ 346 (380)
T PLN02807 320 ESLLKDALEDKLLQKVVVEVLPFWSGS 346 (380)
T ss_pred HHHHHHHHHCCCccEEEEEEcCceecC
Confidence 999999999999999999999998854
No 27
>PHA03370 virion protein US2; Provisional
Probab=36.11 E-value=1.2e+02 Score=30.67 Aligned_cols=85 Identities=9% Similarity=0.132 Sum_probs=50.8
Q ss_pred CHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHh-cCCCcCEEEEEEECccccCCcc------CCCCCCCCcee----ee
Q 010303 113 SIGSALELLAASPYCLSIEKVFVIGGGQILSEAL-NAPECDAIHITEIETRIECDTF------IPSIDSSVFQP----WY 181 (513)
Q Consensus 113 sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L-~~~lvDel~LT~I~~~~~GD~f------FP~~~~~~f~l----~~ 181 (513)
|+.+-...|.+.......=+.||+|-|.|++.++ ..+.=-++....++....|-++ -|.+- +.|+. .+
T Consensus 113 sv~sGy~~LnSg~~gn~pyhLWVlGAADLC~p~~e~ip~pkRli~~kv~~tW~G~~W~lPd~~~~~~t-s~W~P~~~~~~ 191 (269)
T PHA03370 113 DVLSGYLMLESEVSGNHSYSLWIVGAADICRPAIEQIPLPKRLLAIKVPGTWSGMPWAIPDGIQTLLT-STWEPKFDTTE 191 (269)
T ss_pred hHHHHHHHhccccccCcceeeEEechHHHHHHHHHhCCCCceEEEEEcCccccCCcccCCCCCCccee-ccCCCCCCchh
Confidence 4455556665432222334699999999999999 3456678888889888766443 23221 22332 22
Q ss_pred eecCcccCCccEEEEEE
Q 010303 182 SSFPIVENNIRYCLSTY 198 (513)
Q Consensus 182 ~~~~~~e~~~~~~f~~Y 198 (513)
...+..++|+.+.|.+-
T Consensus 192 ~k~~~~~~~~~c~y~~i 208 (269)
T PHA03370 192 DKAHFEDSGMKCVYKII 208 (269)
T ss_pred hhhhhhcCCceEEeeec
Confidence 22344567776665553
No 28
>PRK00536 speE spermidine synthase; Provisional
Probab=30.52 E-value=28 Score=35.49 Aligned_cols=43 Identities=12% Similarity=0.381 Sum_probs=32.8
Q ss_pred CCCcEEEEecHH--HHHHHhcCCCcCEEEEEEECccc--cCCccCCCCC
Q 010303 129 SIEKVFVIGGGQ--ILSEALNAPECDAIHITEIETRI--ECDTFIPSID 173 (513)
Q Consensus 129 ~~~~I~ViGG~~--Iy~~~L~~~lvDel~LT~I~~~~--~GD~fFP~~~ 173 (513)
..++|.|+||+. +.+++|+++ +++.+-.|+..+ -|..|||.+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHH
Confidence 458999999975 999999987 467666666543 4778899754
No 29
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=21.92 E-value=1.4e+02 Score=26.44 Aligned_cols=85 Identities=13% Similarity=0.304 Sum_probs=52.5
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010303 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (513)
Q Consensus 24 i~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~ 103 (513)
..+++++. ...+.+-++.|.-.-|+..+.+... ..+++.|.|.++.--. --+.+-
T Consensus 22 ~~~~~~lN--d~~aDG~DvSWiWDvdFE~L~~~~i-------~~viv~G~Ra~DmalR--LkyAGv-------------- 76 (113)
T PF08353_consen 22 KSVLIALN--DNYADGRDVSWIWDVDFEKLADPNI-------KQVIVSGTRAEDMALR--LKYAGV-------------- 76 (113)
T ss_pred ceEEEEec--CCCCCCccceEEeecCHHHHhcCCC-------CEEEEEeeeHHHHHhH--eeecCc--------------
Confidence 34444543 3345566688987888777765432 5688999998876421 011111
Q ss_pred CCCCEEEECCHHHHHHH--HHcCCCCCCCCcEEEEe
Q 010303 104 TVENVVICGSIGSALEL--LAASPYCLSIEKVFVIG 137 (513)
Q Consensus 104 ~~~~v~v~~sleeai~~--l~~~~~~~~~~~I~ViG 137 (513)
+.+.+.+..++++|++. +... +.+.++|+.
T Consensus 77 ~~~~i~v~~d~~~a~~~~~~~~~----~~~~~yil~ 108 (113)
T PF08353_consen 77 DEEKIIVEEDLEEALDAFLIKSD----PTDKVYILA 108 (113)
T ss_pred chHHeEecCCHHHHHHHHHHhcC----CCCcEEEEE
Confidence 22346677899999998 4443 357788874
Done!