Query 010303
Match_columns 513
No_of_seqs 292 out of 2549
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrr_A Dihydrofolate reductase 100.0 4E-141 1E-145 1134.4 43.3 489 15-513 6-515 (515)
2 3hj3_A Chain A, crystal struct 100.0 1E-139 5E-144 1124.1 40.9 487 20-513 3-521 (521)
3 3irm_A Bifunctional dihydrofol 100.0 1E-137 4E-142 1109.2 40.9 459 16-513 15-521 (521)
4 3qg2_A Bifunctional dihydrofol 100.0 7E-138 2E-142 1118.7 36.4 488 21-513 25-608 (608)
5 3ed7_A Tsase, TS, thymidylate 100.0 8E-101 3E-105 766.9 20.8 274 240-513 8-295 (295)
6 1j3k_C Bifunctional dihydrofol 100.0 4.9E-99 2E-103 763.6 24.7 293 221-513 22-328 (328)
7 3kgb_A Thymidylate synthase 1/ 100.0 8.1E-99 3E-103 752.9 18.5 272 241-513 6-294 (294)
8 1f28_A Thymidylate synthase; b 100.0 4.9E-97 2E-101 743.6 21.6 274 240-513 2-297 (297)
9 1hw4_A TS, thymidylate synthas 100.0 1.5E-96 5E-101 749.2 22.6 274 240-513 68-355 (355)
10 2aaz_A TS, tsase, thymidylate 100.0 3.4E-96 1E-100 741.6 22.9 273 241-513 17-317 (317)
11 4dq1_A TS, tsase, thymidylate 100.0 4.6E-96 2E-100 737.9 19.7 264 241-513 6-321 (321)
12 3v8h_A TS, tsase, thymidylate 100.0 7.8E-95 2.7E-99 732.6 16.6 270 241-513 2-327 (327)
13 3uwl_A TS, tsase, thymidylate 100.0 5.6E-94 1.9E-98 728.9 21.6 262 244-513 2-315 (315)
14 3qj7_A TS, tsase, thymidylate 100.0 3E-93 1E-97 704.0 18.9 249 244-513 2-264 (264)
15 2g8o_A TS, tsase, thymidylate 100.0 2.4E-90 8.1E-95 686.9 20.6 250 244-513 1-264 (264)
16 1tis_A Thymidylate synthase; t 100.0 8.4E-91 2.9E-95 694.3 12.6 253 244-513 1-286 (286)
17 3ix6_A TS, tsase, thymidylate 100.0 1.2E-89 4.1E-94 706.0 17.5 253 241-513 94-360 (360)
18 1bkp_A Thymidylate synthase A; 100.0 1.7E-88 5.8E-93 676.8 21.5 252 242-513 2-278 (278)
19 1b5e_A Protein (deoxycytidylat 100.0 8.7E-65 3E-69 500.6 12.6 206 241-477 6-237 (246)
20 3rg9_A Bifunctional dihydrofol 100.0 3.4E-43 1.2E-47 346.2 14.9 186 16-201 21-239 (240)
21 3nzb_X Dihydrofolate reductase 100.0 2.1E-42 7.3E-47 334.0 15.2 182 18-201 1-205 (206)
22 3s9u_A Dihydrofolate reductase 100.0 2.2E-41 7.5E-46 316.2 19.7 158 23-201 5-164 (165)
23 3tq8_A Dihydrofolate reductase 100.0 4E-41 1.4E-45 317.7 20.0 160 23-203 2-163 (178)
24 3ia4_A Dihydrofolate reductase 100.0 2.4E-41 8.1E-46 315.1 17.5 158 23-201 2-161 (162)
25 3dau_A Dihydrofolate reductase 100.0 4.4E-41 1.5E-45 312.3 16.1 156 24-201 2-159 (159)
26 3ix9_A Dihydrofolate reductase 100.0 5.4E-40 1.8E-44 313.2 20.0 162 21-201 22-186 (190)
27 1kmv_A DHFR, dihydrofolate red 100.0 4.4E-40 1.5E-44 312.9 18.8 178 21-201 1-185 (186)
28 3dfr_A Dihydrofolate reductase 100.0 8E-40 2.7E-44 304.9 17.9 159 25-201 2-161 (162)
29 2bl9_A Dihydrofolate reductase 100.0 1.8E-39 6.3E-44 319.1 13.8 174 23-201 26-238 (238)
30 2w3w_A Dihydrofolate reductase 100.0 5.6E-38 1.9E-42 293.7 17.6 160 23-201 5-167 (167)
31 1zdr_A Dihydrofolate reductase 100.0 2E-37 6.9E-42 288.8 20.9 158 24-201 2-161 (164)
32 1j3k_A Bifunctional dihydrofol 100.0 1.3E-38 4.5E-43 319.2 11.8 180 21-205 25-233 (280)
33 2w9h_A DHFR, dihydrofolate red 100.0 2.5E-37 8.7E-42 286.9 17.4 155 23-201 2-158 (159)
34 1vdr_A DHFR, dihydrofolate red 100.0 6E-37 2.1E-41 284.9 18.0 156 23-201 2-158 (162)
35 1df7_A DHFR, dihydrofolate red 100.0 5E-37 1.7E-41 285.1 16.8 154 24-201 2-159 (159)
36 1aoe_A DHFR, dihydrofolate red 100.0 8.7E-37 3E-41 291.6 14.1 172 22-201 4-192 (192)
37 3cse_A Dihydrofolate reductase 100.0 8.4E-37 2.9E-41 298.9 12.3 177 22-201 4-217 (227)
38 1juv_A DHFR, dihydrofolate red 100.0 2E-31 6.7E-36 254.9 8.6 131 24-171 2-162 (193)
39 1cz3_A Dihydrofolate reductase 100.0 7.9E-29 2.7E-33 231.1 18.5 162 22-203 1-166 (168)
40 3jtw_A Dihydrofolate reductase 100.0 8E-29 2.7E-33 233.5 15.7 162 21-200 3-177 (178)
41 3ky8_A Putative riboflavin bio 99.9 1.9E-26 6.5E-31 221.0 15.8 164 21-201 19-195 (197)
42 2xw7_A Dihydrofolate reductase 99.9 3.8E-26 1.3E-30 214.5 11.0 163 20-201 2-174 (178)
43 2gd9_A Hypothetical protein YY 99.9 5.1E-25 1.7E-29 208.6 12.3 167 17-201 4-188 (189)
44 3kgy_A Bifunctional deaminase- 99.9 1.1E-22 3.8E-27 199.1 13.6 165 21-200 20-230 (231)
45 2b3z_A Riboflavin biosynthesis 99.7 2.4E-16 8E-21 164.7 14.6 168 19-201 155-371 (373)
46 2azn_A HTP reductase, putative 99.6 6.8E-15 2.3E-19 142.3 18.9 166 20-201 2-218 (219)
47 2g6v_A Riboflavin biosynthesis 99.4 1.8E-12 6.2E-17 136.5 17.8 153 19-182 171-380 (402)
48 2hxv_A Diaminohydroxyphosphori 99.4 5.9E-12 2E-16 130.8 20.1 166 19-201 157-357 (360)
49 2p4g_A Hypothetical protein; p 99.4 3.8E-11 1.3E-15 119.9 20.0 169 20-203 32-263 (270)
50 3r68_A Na(+)/H(+) exchange reg 21.0 84 0.0029 24.5 3.8 45 437-481 41-85 (95)
51 1g9o_A NHE-RF; PDZ domain, com 20.4 1.3E+02 0.0044 23.2 4.7 45 438-482 40-84 (91)
No 1
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=4.3e-141 Score=1134.43 Aligned_cols=489 Identities=42% Similarity=0.773 Sum_probs=453.9
Q ss_pred cCCCCCCceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhhc------cCCCCCCcEEEEccccccccCCCCCCCC
Q 010303 15 STQPNPKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLP 87 (513)
Q Consensus 15 ~~~~~~mrki~livAvs~dG~IG~~g~LpW~-~peD~~~F~~~T~~------~~~~~~~~~vIMGRkTyeslp~~~~pl~ 87 (513)
+..+++||+|++|+|+|+||+||.+|+|||+ +|+|++||+++|++ +++|++.++||||||||||+|.+++||+
T Consensus 6 ~~~~~~MrkI~livA~SldG~IG~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~~~rPLp 85 (515)
T 3nrr_A 6 SNSYEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLK 85 (515)
T ss_dssp -CTTTTCCCEEEEEEECTTSEEEBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGGGCSCT
T ss_pred CCCCCCCceEEEEEEECCCCcCCCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhhccCCCC
Confidence 3456779999999999999999999999999 99999999999986 3456778999999999999986568999
Q ss_pred CCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCc
Q 010303 88 GRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDT 167 (513)
Q Consensus 88 ~R~~iVlSrt~~~~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~ 167 (513)
+|+||||||+... .+++.+++|+++|++.|++. .++++||||||++||++||++++||+++||+||..++||+
T Consensus 86 ~R~nIVlSrt~~~----~~~v~V~~sl~eal~~Lk~~---~~~~~I~VIGGg~Iy~~~L~~~liDel~LT~I~~~~~GDt 158 (515)
T 3nrr_A 86 NRINVILSRTVKE----VPGCLVYEDLSTAIRDLRAN---VPHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDT 158 (515)
T ss_dssp TEEEEEECSSCCC----CTTEEEESSHHHHHHHHHHH---SCCSCEEECCCHHHHHHHHHTTCEEEEEEEEESSCCCCSE
T ss_pred CCeEEEECCCCCC----CCCEEEECCHHHHHHHHhhc---cCCCCEEEECCHHHHHHHhhCCCCCEEEEEEecCccCCCc
Confidence 9999999999742 35789999999999999864 1368999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeeeeecCcccCCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChhHHHH
Q 010303 168 FIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHEEYLY 247 (513)
Q Consensus 168 fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 247 (513)
|||++ ...|++++.+...+++++.|+|++|+|+++.+.+..+..+. ...++++++|+.+.++++|++.+++|.|+||
T Consensus 159 fFP~~-~~~w~~v~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 235 (515)
T 3nrr_A 159 YFPDI-PDTFEITAISPTFSTDFVSYDFVIYERKDCKTVFPDPPFDQ--LLMTGTDISVPKPKYVACPGVRIRNHEEFQY 235 (515)
T ss_dssp ECCCC-CTTEEEEEECCCEECSSCEEEEEEEEECC------CCCHHH--HHTTCSCSSCCCCSCCSSTTCCEECSTHHHH
T ss_pred cCCCc-hhhCEEEEEecccccCCCceEEEEEEEcccccccccccccc--cccccccccccccccccccccccCCchHHHH
Confidence 99999 78899998766667899999999999998776554321111 2456888889888899999999999999999
Q ss_pred HHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCccccCccc
Q 010303 248 LRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNA 327 (513)
Q Consensus 248 l~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW~~~~ 327 (513)
++||++||++|+.++||||+||+|+||+||||||+++||++||||++||++++||||||+|+||+++|+++|++|||+|+
T Consensus 236 l~l~~~il~~G~~~~dRtg~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~g~~iWd~n~ 315 (515)
T 3nrr_A 236 LDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAKNVRIWELNG 315 (515)
T ss_dssp HHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTHHHH
T ss_pred HHHHHHHHHhCcCCCCCCCCCeEEeccceEEEecccCCcceeecccchhhhHHHHHHHHhCCccHHHHHHcCCeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccccccCCCC
Q 010303 328 SREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALP 407 (513)
Q Consensus 328 ~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~ 407 (513)
+++||++.|++++++|+||++||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||+++++|+||
T Consensus 316 ~~~wl~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp~~~~~malp 395 (515)
T 3nrr_A 316 RRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALP 395 (515)
T ss_dssp SHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSC
T ss_pred hhhhhhhcCCccccCCcCcchhhhheeeCCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecChhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHhhcCC
Q 010303 408 PCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 473 (513)
Q Consensus 408 PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p 473 (513)
|||.++ |||+|++||+||||++|++|++|||++||+++|+|+|+++|||||+||+|++++||+|+|
T Consensus 396 PCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql~R~p 475 (515)
T 3nrr_A 396 PCHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIP 475 (515)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCC
T ss_pred CCceEEEEEEeCCEEEEEEEchhhhHHHhhhccHHHHHHHHHHHHHHhCCeeeEEEEEEEeEEEcHHHHHHHHHHhcCCC
Confidence 999877 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 474 KPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 474 ~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 476 ~~~P~l~i~~~~~~~~~~~~~df~l~~Y~~~p~ik~~~av 515 (515)
T 3nrr_A 476 HPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMSA 515 (515)
T ss_dssp CCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred CCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 9999999999999999999999999999999999999998
No 2
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=1.4e-139 Score=1124.05 Aligned_cols=487 Identities=46% Similarity=0.822 Sum_probs=449.0
Q ss_pred CCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 010303 20 PKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (513)
Q Consensus 20 ~mrki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~ 99 (513)
.||++++|+|+|+||+||.+|+|||++|+|++||+++|++.++|++.++|||||||||+++ .|||++|+||||||+..
T Consensus 3 ~MrkI~lIvA~SldG~IG~dg~LpW~lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsig--~~PLp~R~nIVlSrt~~ 80 (521)
T 3hj3_A 3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRPLKNRIIVVISSSLP 80 (521)
T ss_dssp CCCEEEEEEEETTTCEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGT--TCCCTTSEEEEECSSSC
T ss_pred CCceEEEEEEECCCCcEECCCCCCCCCHHHHHHHHHHHcCCCccccCCEEEEcccHHhhcC--cccCCCCeEEEEcCCCc
Confidence 4899999999999999999999999999999999999997777888899999999999994 58999999999999975
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECc-cccCCccCCCCCCCCce
Q 010303 100 FDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIET-RIECDTFIPSIDSSVFQ 178 (513)
Q Consensus 100 ~~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~-~~~GD~fFP~~~~~~f~ 178 (513)
.. ...+++++++|+++|++.+++.+ +.++|||+||++||++||++++||+++||+||. .++||+|||+++.. |+
T Consensus 81 ~~-~~~~~~~V~~sl~eal~~lk~~~---g~~~I~VIGGa~ly~~~L~~~liDel~LT~Ipv~~~~GDtfFP~~d~~-w~ 155 (521)
T 3hj3_A 81 QD-EADPNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FL 155 (521)
T ss_dssp CC-CSCSSEEEESSTTTTTTSSSSCT---TEEEEEEEECHHHHHHHHHTTCCSEEEEEEECCCSSCCSEECCCCCTT-EE
T ss_pred cc-CCCCCEEEECCHHHHHHHHhhcc---CCCCEEEEeCHHHHHHHhcCCCCCEEEEEEEeccCcCcCccCCCCCCC-cE
Confidence 31 12356899999999999998652 247899999999999999999999999999999 78999999999988 99
Q ss_pred eeeeecCcccCCccEEEEEEEE-cccchhhccccCCcc--------------ccccCCCCCcccccccccCCcccc-cCh
Q 010303 179 PWYSSFPIVENNIRYCLSTYVR-VRSAAVESLSQNNDI--------------VLDSKTNSDKFEVKQFSFLPKMVF-EKH 242 (513)
Q Consensus 179 l~~~~~~~~e~~~~~~f~~Y~r-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (513)
+++.+....++++.|+|++|+| .++.+.+..+..+.. .....+++.+|+.+.++++|++.| ++|
T Consensus 156 lv~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (521)
T 3hj3_A 156 PVYMSQTFCTKNISYDFMIFEKQEKKTLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSIRFGREH 235 (521)
T ss_dssp EEEECCCEEETTEEECCEEEEECCC-----------CCHHHHHHHHHHHHHHGGGSHHHHTCCCCGGGSSSTTCSSCBCS
T ss_pred EEEeecccccCCCceEEEEEEecCcccccccccccccccccccccccccccccccccccccccccccccccccccccCCc
Confidence 9987666677999999999999 556665655544333 223346678899899999999999 999
Q ss_pred hHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCccc
Q 010303 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (513)
Q Consensus 243 ~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (513)
.|+||++||++|+++|+.++||||+||+|+||+|+||||+++||++||||++||++++||||||+|+||+++|+++|++|
T Consensus 236 ~~~~Yl~l~~~Il~~G~~~~dRtg~gt~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~G~tn~~~l~~~gv~i 315 (521)
T 3hj3_A 236 YEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYI 315 (521)
T ss_dssp THHHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSSCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCT
T ss_pred hHHHHHHHHHHHHHcCcCcCCCCCCceEEeccceEEEccccCcceeeeccccHHHHHHHHHHHHhCCccHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccccc
Q 010303 323 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK 402 (513)
Q Consensus 323 W~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~ 402 (513)
||+|++++||++.|++++++|++|++||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||++++
T Consensus 316 Wd~n~~~~~l~~~~~~~~~~g~lG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~ivs~wnp~d~~ 395 (521)
T 3hj3_A 316 WSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALS 395 (521)
T ss_dssp TSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCTTTGG
T ss_pred cCccchhhhhhhcccccccCCcccchhhhheeeCCCccccccccccccchhHHHHHHHHHhcCCCcceeEEEecChhHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccCc---------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHH
Q 010303 403 LMALPPCHMFA---------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 467 (513)
Q Consensus 403 ~~~l~PC~~~~---------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~ 467 (513)
+|+|||||.++ |||+|++||+||||++|++|++|||++||+++|+|+|+++|||||+||+|++++
T Consensus 396 ~malpPCh~~~qf~V~~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ 475 (521)
T 3hj3_A 396 QMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKE 475 (521)
T ss_dssp GSSSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred cCCCCCceEEEEEEECCCCcEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEehhHHHHHHH
Confidence 99999999866 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 468 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 468 ~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 476 ql~R~p~~~P~l~i~~~~~~~~d~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3hj3_A 476 QLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521 (521)
T ss_dssp HTTSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred HhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 9999999999999999999999999999999999999999999998
No 3
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=1.2e-137 Score=1109.18 Aligned_cols=459 Identities=51% Similarity=0.905 Sum_probs=430.3
Q ss_pred CCCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhc------cCCCCCCcEEEEccccccccCCCCCCCCCC
Q 010303 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGR 89 (513)
Q Consensus 16 ~~~~~mrki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~------~~~~~~~~~vIMGRkTyeslp~~~~pl~~R 89 (513)
+.+++|++|++|||++.||+||.+|+|||++|+||+||+++|++ .++|++.++||||||||||+|.+++|||+|
T Consensus 15 ~~~~~~~~islIvA~~~ng~IG~~g~LPW~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~k~rPLP~R 94 (521)
T 3irm_A 15 GTRLALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGR 94 (521)
T ss_dssp GGSCSSCCEEEEEEEETTSEEESSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGGGCSCTTE
T ss_pred ccccCCceEEEEEEECCCCceecCCCcCCCChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCcccccCCCCCC
Confidence 55788999999999999999999999999999999999999997 567788899999999999999767899999
Q ss_pred cEEEEcCCCCCC-----C--------CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCC---CcCE
Q 010303 90 LNVVLTRSGSFD-----I--------ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDA 153 (513)
Q Consensus 90 ~~iVlSrt~~~~-----~--------~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~---lvDe 153 (513)
.||||||+.... . ...+++.+++|+++|++.+++.++..+.++||||||++||++||+++ +||+
T Consensus 95 ~NIVLSR~~~~~~~~~~~p~~~~~~~~~~~~v~V~~SleeAL~~l~~~~~~~~~~~VfVIGGa~IY~~~L~~~~~~l~D~ 174 (521)
T 3irm_A 95 LNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQA 174 (521)
T ss_dssp EEEEECSSCCHHHHHHTSSSHHHHHHHGGGEEEESSCHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHTSTTGGGGEEE
T ss_pred eEEEEecccccccccccccccccccccCCCCeEEECCHHHHHHHHhccccccCCCeEEEEcCHHHHHHHHhCCccccCCE
Confidence 999999987431 0 01356889999999999998753333457899999999999999988 9999
Q ss_pred EEEEEEC-ccccCCccC--CCCCCCC-----ceeeeeecCc-ccCC--ccEEEEEEEEcccchhhccccCCccccccCCC
Q 010303 154 IHITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFPI-VENN--IRYCLSTYVRVRSAAVESLSQNNDIVLDSKTN 222 (513)
Q Consensus 154 l~LT~I~-~~~~GD~fF--P~~~~~~-----f~l~~~~~~~-~e~~--~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~ 222 (513)
++||+|+ ..++||+|| |.++.+. |++++.+... +++| +.|+|++|+|+
T Consensus 175 l~lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~F~~y~r~--------------------- 233 (521)
T 3irm_A 175 IYRTTIRASESSCSVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYYFEKLIPR--------------------- 233 (521)
T ss_dssp EEEEEECCSSCCCSEECCCCCTTSGGGTTCCEEEEEECCCEECSSSSCCEEEEEEEEEC---------------------
T ss_pred EEEEEecCCCcccceecCCCCCChhhccccceEEEEeecccccCCCCeeeEEEEEEEEC---------------------
Confidence 9999999 889999999 9998876 9998765443 3377 99999999984
Q ss_pred CCcccccccccCCcccccChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCC-CCcccccccccccchhhh
Q 010303 223 SDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEE 301 (513)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~-~fPllTtkk~~~k~~~~E 301 (513)
+|.|+||++||++||++|+.++||||+||+|+||+||||||++ +||++||||++||++++|
T Consensus 234 ------------------n~~~~~Yl~l~~~il~~G~~~~drtg~~t~s~fg~~~r~dl~~~~fPllTtkk~~~k~~i~E 295 (521)
T 3irm_A 234 ------------------NREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEE 295 (521)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHH
T ss_pred ------------------ChhHHHHHHHHHHHHHhCcCCCCCCCCceEEecceeEEEeccCCCCcceeecccchhHHHHH
Confidence 6999999999999999999999999999999999999999999 799999999999999999
Q ss_pred hHHhhcCCCchhhhhhcCccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHH
Q 010303 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINK 381 (513)
Q Consensus 302 llW~l~G~~~~~~l~~~~~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~ 381 (513)
|||||+|+||+++|+++|++|||+|++++||++.|++++++|++|++||+|||+|++.|.+|+++|+|+++|||++||++
T Consensus 296 llWfl~g~tn~~~l~~~g~~iWd~~~~~~~l~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~ 375 (521)
T 3irm_A 296 LLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVET 375 (521)
T ss_dssp HHHHHTTCCBTHHHHTTTCCTTSTTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHhcCCeecCcccchhhhhhcCCccccCCcchhhhhhhhhcCCccccccccCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcceEEEccCccccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCccee
Q 010303 382 IKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGD 447 (513)
Q Consensus 382 Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~ 447 (513)
||+||+|||+|+++|||+++++|+|||||.++ |||+|++||+||||++|++|++|||++||+++|+
T Consensus 376 lk~nP~sRR~i~s~wnp~d~~~malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~ 455 (521)
T 3irm_A 376 LKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGE 455 (521)
T ss_dssp HHHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HhcCCCCceEEEEecChhHhhcCCCCCCceEEEEEEeCCEEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceE
Confidence 99999999999999999999999999999877 9999999999999999999999999999999999
Q ss_pred EEEEEccccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 448 FIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 448 ~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
|+|+++|||||+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 456 ~~h~~gdaHIY~nh~~~~~~ql~R~p~~~P~l~i~~~~~~~~~~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3irm_A 456 LVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521 (521)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEESCCCSBGGGCCGGGEEEESCCCCCCCSCCCC-
T ss_pred EEEEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 4
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=100.00 E-value=6.7e-138 Score=1118.69 Aligned_cols=488 Identities=43% Similarity=0.790 Sum_probs=445.0
Q ss_pred CceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhcc----------------------------CCCCCCcEEEE
Q 010303 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQIT----------------------------SDAGKRNAVIM 71 (513)
Q Consensus 21 mrki~livAvs~dG~IG~~g~LpW-~~peD~~~F~~~T~~~----------------------------~~~~~~~~vIM 71 (513)
..++.+|||++.||+||.+|+||| |+|+||+||+++|+++ .+|+++++|||
T Consensus 25 ~~~i~lIvA~~~n~gIG~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~VIM 104 (608)
T 3qg2_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (608)
T ss_dssp CSCCCCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCEEEEE
T ss_pred CceEEEEEEeCCCCccccCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCccccccccCcCCEEEE
Confidence 678999999999999999999999 8999999999999832 14677899999
Q ss_pred ccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCc
Q 010303 72 GRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPEC 151 (513)
Q Consensus 72 GRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lv 151 (513)
|||||||+|.+++|||+|+||||||+.... ...+++.+++|+++|++.+++. +.++||||||++||++||++++|
T Consensus 105 GRKTfESIp~~frPLPgR~NIVLSR~~~~~-~~~~gv~V~~sleeal~~lk~~----~~~~IfVIGGa~IY~~~L~~~la 179 (608)
T 3qg2_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLI 179 (608)
T ss_dssp EHHHHHHSCGGGCSCTTEEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCC
T ss_pred chHHHHhhccccCCCCCCeEEEECCCCccc-cCCCCEEEECCHHHHHHHHhcC----CCCeEEEECCHHHHHHHcccCCC
Confidence 999999998656899999999999996421 1245688999999999999875 25799999999999999999999
Q ss_pred CEEEEEEECccccCCccCCCCCCCCceeeeeecCcccCCccEEEEEEEEcccchhhccccCCcccc--------------
Q 010303 152 DAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVL-------------- 217 (513)
Q Consensus 152 Del~LT~I~~~~~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~-------------- 217 (513)
|+++||+|+..++||+|||+++.+.|++++.+.+..++++.|+|++|+|+++.+.+..+..++...
T Consensus 180 DeL~LT~I~~~~eGDtfFP~id~~~w~~~~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (608)
T 3qg2_A 180 KKIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTC 259 (608)
T ss_dssp SEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC----------------------------
T ss_pred CEEEEEEeCCccCCCccCCCCChHHcEEEEEeeeeccCCCceEEEEEEECCCcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998877778899999999999998877665443322211
Q ss_pred --------------------------------------ccCCC-CCcccccccccCCcccccChhHHHHHHHHHHHHHcC
Q 010303 218 --------------------------------------DSKTN-SDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDG 258 (513)
Q Consensus 218 --------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G 258 (513)
+..++ +.+++...|+++|++.|++|.|+||++||++||++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qYldl~~~Il~~G 339 (608)
T 3qg2_A 260 HMKKLTEFYKNVDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNG 339 (608)
T ss_dssp -----------------------CCHHHHHHHHHTTTCCSSCTTHHHHCGGGGHHHHHCSEECSTHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccCHHHHHHHHHHHHHHcC
Confidence 00112 345666789999999999999999999999999999
Q ss_pred ccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCccccCccchhHhHhhcCCC
Q 010303 259 NLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLT 338 (513)
Q Consensus 259 ~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW~~~~~~~~l~~~~~~ 338 (513)
+.++||||+||+|+||+|+||||+++||++||||++||++++||||||+|+||+.+|+++|++|||+|++++|+++.|+.
T Consensus 340 ~~~~dRTGtgT~s~fg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~IWd~n~~~~~~~~~~~~ 419 (608)
T 3qg2_A 340 NKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLF 419 (608)
T ss_dssp EEECCSSSCCEEEEEEEEEEEETTTCCCCCCSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTGGGGSHHHHHHTTCT
T ss_pred CccCCCCCCceEEecceeEEEccccCCceeecccccHHHHHHHHHHHHhCCccHHHHHHcCCCccCccchhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccccccCCCCCCccCc-----
Q 010303 339 DREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA----- 413 (513)
Q Consensus 339 ~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~----- 413 (513)
++++|+||++||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||+++++|+|||||.++
T Consensus 420 ~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~ 499 (608)
T 3qg2_A 420 HREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVF 499 (608)
T ss_dssp TSCTTBCCSCHHHHHHHBTSCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEEE
T ss_pred cccCCCCchhhhHhhhcCCCccccchhcccccchHHHHHHHHHHhhCCCccceEEEecChhHhccCCCCCceEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ---------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHhhcCCCCCCeEEeCCC
Q 010303 414 ---------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPE 484 (513)
Q Consensus 414 ---------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 484 (513)
|||+|++||+||||++|++|++|||++|||++|+|+|+++|||||+||+|++++||+|+|+++|+|+||++
T Consensus 500 ~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~i~~~ 579 (608)
T 3qg2_A 500 DGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPD 579 (608)
T ss_dssp TTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTT
T ss_pred CCeEEEEEEeehhhhhhhhhccHHHHHHHHHHHHHHhCCeeeEEEEEeeeeEEeHhHHHHHHHHhcCCCCCCCEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 485 KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 485 ~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+++|+||++|||+|+||+|||+|||||||
T Consensus 580 ~~~i~df~~~Df~l~~Y~~hp~Ik~~~av 608 (608)
T 3qg2_A 580 IKNIEDFTISDFTIQNYVHHEKISMDMAA 608 (608)
T ss_dssp CCSGGGCCGGGEEEESCCCCCCCCSSCCC
T ss_pred CCChhcCCHhHEEEeCCcCCCccCcCccC
Confidence 99999999999999999999999999998
No 5
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=100.00 E-value=7.8e-101 Score=766.85 Aligned_cols=274 Identities=66% Similarity=1.159 Sum_probs=261.8
Q ss_pred cChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcC
Q 010303 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (513)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (513)
.+|.|+||+++|++|+++|+.++||||+||+|+||+++||||+++||++||||++||++++|||||++|+||+++|+++|
T Consensus 8 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~g 87 (295)
T 3ed7_A 8 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 87 (295)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC--
T ss_pred CCChHHHHHHHHHHHHHcCcCCCCCCCCceEEEcCceEEEecccCcceeecccccHHHHHHHHHHHHhCCccHHHHHHcC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcc
Q 010303 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (513)
Q Consensus 320 ~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~ 399 (513)
++|||+|++++|+++.|++++++|++|++||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 88 v~IWd~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~ 167 (295)
T 3ed7_A 88 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 167 (295)
T ss_dssp ---CCSCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccccchhhhhhhcccCCccCCCcCccchhhhhhccCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCHh
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhH
Q 010303 400 DLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 465 (513)
Q Consensus 400 ~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 465 (513)
++++|+|||||.++ |||+|++||+||||++|++|++|||++||+++|+|+|+++|||||+||+|++
T Consensus 168 dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~~ 247 (295)
T 3ed7_A 168 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 247 (295)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhhcCCCCCceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHHH
Confidence 99999999999877 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 466 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 466 ~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 248 ~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~aV 295 (295)
T 3ed7_A 248 KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295 (295)
T ss_dssp HHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCC----
T ss_pred HHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCccccC
Confidence 999999999999999999999999999999999999999999999998
No 6
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=100.00 E-value=4.9e-99 Score=763.57 Aligned_cols=293 Identities=54% Similarity=1.017 Sum_probs=285.1
Q ss_pred CCCCcccccccccCCcccccChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhh
Q 010303 221 TNSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300 (513)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~ 300 (513)
+++..++...++++|++++.+++|+||+++|++|+++|+.++||||+||+|+||+++||||++|||++||||++||++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~e~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~gFPllTtKkv~~ks~i~ 101 (328)
T 1j3k_C 22 KNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIE 101 (328)
T ss_dssp TSCSCCCGGGGHHHHHCSEECSTHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHH
T ss_pred hccCcccccceeechhhcccCcHHHHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEccccCCcccccccccchhcHH
Confidence 34444666788899999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcCCCchhhhhhcCccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHH
Q 010303 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVIN 380 (513)
Q Consensus 301 EllW~l~G~~~~~~l~~~~~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~ 380 (513)
||||||+|+||+++|+++|++|||+|++++||++.|++++++|++|++||+|||+|++.|.+++.+|+|+++|||++||+
T Consensus 102 ELLWfl~G~tni~~L~e~gv~IWd~wa~~~~ld~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~ 181 (328)
T 1j3k_C 102 ELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIIN 181 (328)
T ss_dssp HHHHHHTTCCBHHHHHTTTCCTTSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHcCCcccCccchhhhhhccccccccCCcccccCchHhhcCCcccccccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcceEEEccCccccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcce
Q 010303 381 KIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPG 446 (513)
Q Consensus 381 ~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G 446 (513)
+||+||+|||+|+++|||+++++|+|||||.++ ||||||+||+||||++|++|++|||++||+++|
T Consensus 182 ~Lk~nP~SRR~IvsaWnp~dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LG~PfNiasyalL~~miAq~~Gle~G 261 (328)
T 1j3k_C 182 LIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPA 261 (328)
T ss_dssp HHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCCCceEEEEccCHHHhcCCCCCCceeEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeee
Confidence 999999999999999999999999999999877 999999999999999999999999999999999
Q ss_pred eEEEEEccccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 447 DFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 447 ~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+|+|++||||||+||+|+|++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 262 efih~igdaHIY~nhie~v~~qL~R~P~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~vAV 328 (328)
T 1j3k_C 262 QFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 328 (328)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC
T ss_pred EEEEEEeeeEeeHHHHHHHHHHhcCCCCCCCeeEeCCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=100.00 E-value=8.1e-99 Score=752.94 Aligned_cols=272 Identities=57% Similarity=1.086 Sum_probs=234.9
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCC-CCcccccccccccchhhhhHHhhcCCCchhhhhhcC
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~-~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (513)
+|.|+||++||++|+++|+.++||||+||+|+||+++||||++ +||++||||++||++++||||||+|+||+++|+++|
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~g 85 (294)
T 3kgb_A 6 RHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKG 85 (294)
T ss_dssp -CTHHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHTTT
T ss_pred CchHHHHHHHHHHHHHhCcCcCCCCCCceEEeccceEEEecccCccceeeeccccHHHHHHHHHHHHhCCccHHHHHhcC
Confidence 6999999999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred ccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcc
Q 010303 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (513)
Q Consensus 320 ~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~ 399 (513)
++|||+|++++|+++.|+ ++++|++|++||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 86 v~IWd~~~~~~~~~~~~~-~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~ 164 (294)
T 3kgb_A 86 VRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPT 164 (294)
T ss_dssp CC----------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCCTT
T ss_pred CCccccchhhhhhhcccc-cccCCCCccccchhhhcCCCccccccccccccchhHHHHHHHHHhcCCCccceEEEecChh
Confidence 999999999999999998 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhH
Q 010303 400 DLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 465 (513)
Q Consensus 400 ~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 465 (513)
++++|+|||||.++ |||+|++||+||||++|++|++|||++||+++|+|+|+++|||||+||+|++
T Consensus 165 dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e~~ 244 (294)
T 3kgb_A 165 DLGSMALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSL 244 (294)
T ss_dssp CHHHHHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhcCCCCCCCCceEEEEEECCEEEEEEEehhhhhhHHhhccHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEecHHHHHHH
Confidence 99999999999877 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCC--CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 466 EEQLQKLPKPFPILKINPE--KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 466 ~~~l~r~p~~~P~l~~~~~--~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+||+|||.
T Consensus 245 ~~qL~R~p~~~P~l~i~~~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~a~ 294 (294)
T 3kgb_A 245 RQQIQRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMSA 294 (294)
T ss_dssp HHHTTSCCCCCCEEEECCSSCCCSGGGCCGGGEEEESCCCC---------
T ss_pred HHHhcCCCCCCCEEEECCcCCCCchhcCCHhHEEEeCCcCCCcCCCCCCC
Confidence 9999999999999999998 99999999999999999999999999983
No 8
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=100.00 E-value=4.9e-97 Score=743.59 Aligned_cols=274 Identities=63% Similarity=1.155 Sum_probs=268.8
Q ss_pred cChhHHHHHHHHHHHHHcCccccCCCCceeEEeece-eEEEeCCCC-CcccccccccccchhhhhHHhhcCCCchhhhhh
Q 010303 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE 317 (513)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~-~~~~dl~~~-fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~ 317 (513)
++|.|+||++||++|+++|+.++||||+||+|+||+ ++||||+++ ||++||||++||++++||||||+|+||+++|++
T Consensus 2 ~~~~e~qYldl~~~Il~~G~~~~dRTG~gT~s~fg~pq~rfdl~~g~fPllTtKkv~~ks~i~ELLWfl~G~tn~~~L~~ 81 (297)
T 1f28_A 2 VNAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLRE 81 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHT
T ss_pred CCchHHHHHHHHHHHHHcCCCcCCCCCCceEeeeccceEEEecCCCcccccccCCccccccHHHHHHHHhCCCcHHHHHH
Confidence 468899999999999999999999999999999999 999999999 999999999999999999999999999999999
Q ss_pred cCccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccC
Q 010303 318 KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWN 397 (513)
Q Consensus 318 ~~~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wn 397 (513)
+|++|||+|++++||++.|++++++|++|++||+|||+|++.|.+++.+|+|+++|||++||++||+||+|||+|+++||
T Consensus 82 ~gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wn 161 (297)
T 1f28_A 82 KNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWN 161 (297)
T ss_dssp TTCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCC
T ss_pred cCCCcCCccccHHHHhhcccccccCCcccccchhhhhcCCccccCcccccCCCCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCccCc--------------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccc
Q 010303 398 PSDLKLMALPPCHMFA--------------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHV 457 (513)
Q Consensus 398 p~~~~~~~l~PC~~~~--------------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HI 457 (513)
|+++++|+|||||.++ ||||||+||+||||++|++|++|||++||+++|+|+|+++||||
T Consensus 162 p~dl~~malpPCh~~~QF~V~~~~~~~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHI 241 (297)
T 1f28_A 162 PADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHI 241 (297)
T ss_dssp TTTGGGSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEE
T ss_pred hhHhhcCCCCCceeEEEEEEeccCCCCCCcEEEEEEhhhhhHHhhhhhhHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEe
Confidence 9999999999998654 99999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 458 YRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 458 Y~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
|+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 242 Y~nh~e~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~av 297 (297)
T 1f28_A 242 YKDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297 (297)
T ss_dssp EHHHHHHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred eHhHHHHHHHHHhcCCCCCCEeeeCCCCCchhhCChhHEEEeCCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 9
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=100.00 E-value=1.5e-96 Score=749.15 Aligned_cols=274 Identities=66% Similarity=1.159 Sum_probs=245.6
Q ss_pred cChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcC
Q 010303 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (513)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (513)
+++.|+||+++|++|+++|+.++||||+||+|+||+++||||+++||++||||++||++++||||||+|+||+++|+++|
T Consensus 68 ~~~~e~qYldll~~IL~~G~~~~dRTGtgT~sifG~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~Gstni~~L~e~g 147 (355)
T 1hw4_A 68 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 147 (355)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCCCCceecccceeEEEeCCcCCcccccccccccccHHHHHHHHhCCCcHHHHHHcC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcc
Q 010303 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (513)
Q Consensus 320 ~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~ 399 (513)
++|||+|++++||++.|++++++|++|++||+|||+|++.|.+++.+|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 148 v~IWd~w~~~~~l~~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~VI~~Lk~nP~SRR~IvsaWNp~ 227 (355)
T 1hw4_A 148 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 227 (355)
T ss_dssp C----------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccCCcchHHHhhccCcccccCCcccCccchhhhcCcccccCCccccCCCChHHHHHHHHHHhcCCCCceEEEEccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhH
Q 010303 400 DLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 465 (513)
Q Consensus 400 ~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 465 (513)
++++|+|||||.++ |||+|++||+||||++|++|++|||++||+++|+|+|++||+|||+||+|++
T Consensus 228 dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LGvPfNIasyalLt~miAq~~Gle~GefvhtigdaHIY~nHie~v 307 (355)
T 1hw4_A 228 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 307 (355)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred hhhcCCCCCceeEEEEEEeCCEEEEEEEehhhhhhhhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEEEeEeeHHHHHHH
Confidence 99999999999877 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 466 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 466 ~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 308 keqL~ReP~~~P~L~in~~~~~i~df~~eDf~l~~Y~~hp~Ik~~vAV 355 (355)
T 1hw4_A 308 KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355 (355)
T ss_dssp HHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred HHHHhcCCCCCCeeEeCCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 999999999999999999999999999999999999999999999998
No 10
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=100.00 E-value=3.4e-96 Score=741.60 Aligned_cols=273 Identities=62% Similarity=1.091 Sum_probs=268.0
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeece-eEEEeCCCC-CcccccccccccchhhhhHHhhcCCCchhhhhhc
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEK 318 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~-~~~~dl~~~-fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~ 318 (513)
++.|+||++||++|+++|+.++||||+||+|+||+ ++||||+++ ||++||||++||++++||||||+|+||+++|+++
T Consensus 17 ~~~e~qYldl~~~Il~~G~~~~dRTGtgT~sifg~~q~rfdL~~g~fPllTtKkv~~ks~i~ELLWfl~G~tni~~L~~~ 96 (317)
T 2aaz_A 17 DHEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQ 96 (317)
T ss_dssp TCTHHHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHTT
T ss_pred CcHHHHHHHHHHHHHHcCCCccCCCCCceEeecCceeEEEecCCCcceecccCccchHhhHHHHHHHHhCCCcHHHHHhc
Confidence 57899999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred CccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCc
Q 010303 319 DIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNP 398 (513)
Q Consensus 319 ~~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp 398 (513)
|++|||+|++++||++.||+++++|++|++||+|||+|++.|.+++.+|.|+++|||++||++||+||+|||+|+++|||
T Consensus 97 gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~dy~G~~iDQi~~vI~~Lk~nP~SRR~IvsaWnp 176 (317)
T 2aaz_A 97 GVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNP 176 (317)
T ss_dssp TCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCcccCcchhhhhhhccCcccccCCCcCcccchHhhcCCccccCcccccccccHHHHHHHHHHHhcCCCCceEEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccCc-----------------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccc
Q 010303 399 SDLKLMALPPCHMFA-----------------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDA 455 (513)
Q Consensus 399 ~~~~~~~l~PC~~~~-----------------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~ 455 (513)
+++++|+|||||.++ ||||||+||+||||++|++|++|||++||+++|+|+|++|||
T Consensus 177 ~dl~~maLpPCh~~~QF~V~~~~~~~~~~~gkL~~~lyQRS~D~~LGvPfNiasyalL~~miA~~~gl~~G~f~h~~gda 256 (317)
T 2aaz_A 177 KDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDA 256 (317)
T ss_dssp TTGGGSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hHhhcCCCCCcceEEEEEEecccccCCCCCCeEEEEEEeehhhhhhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEeeee
Confidence 999999999998543 999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHhhcCCCCCCeEEeCCC---CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 456 HVYRNHVRPLEEQLQKLPKPFPILKINPE---KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 456 HIY~~h~~~~~~~l~r~p~~~P~l~~~~~---~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
|||+||+|++++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+|||||||
T Consensus 257 HIY~nH~e~v~~qL~R~p~~~P~l~i~~~~~~~~~i~d~~~eDf~l~~Y~~hp~Ik~~vaV 317 (317)
T 2aaz_A 257 HVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMSA 317 (317)
T ss_dssp EEEGGGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGGEEEECCCCCCCCCCCCCC
T ss_pred EeeHhHHHHHHHHHhcCCCCCCeEEECCccCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 99999999999999999999999999998 99999999999999999999999999998
No 11
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=100.00 E-value=4.6e-96 Score=737.94 Aligned_cols=264 Identities=48% Similarity=0.823 Sum_probs=253.3
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCc
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (513)
.+.|+||++||++|+++|+.++||||+||+|+||+|+||||++|||++||||++||++++||||||+|+||+++|+++|+
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTgtgT~s~fg~q~rfdL~~gfPllTTKkv~~k~ii~ELLWfl~G~tNi~~L~~~gv 85 (321)
T 4dq1_A 6 NSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNN 85 (321)
T ss_dssp CHHHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHcCcCCCCCCCCCeEEEeeeeEEecCCCCCceeeeecccHHHHHHHHHHHHhCCCcHHHHHHcCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccchhHhHhhcCCCc--------------------------------------CCCCCcccccccccccccccccc
Q 010303 321 HIWDGNASREYLDSVGLTD--------------------------------------REEGDLGPVYGFQWRHFGARYTN 362 (513)
Q Consensus 321 ~iW~~~~~~~~l~~~~~~~--------------------------------------~~~g~lg~~YG~~wR~~~~~~~~ 362 (513)
+|||+|++++||++.|+.. +++|++|++||+|||+|++
T Consensus 86 ~IWd~wa~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~f~~~il~d~~f~~~~GdLGpvYG~QwR~~~~---- 161 (321)
T 4dq1_A 86 NIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVD---- 161 (321)
T ss_dssp CTTHHHHHHHHTTSTTCCSSCCTTCSHHHHHCTTHHHHHHHHHHHHHHHHHHCHHHHHHHSBCCCCHHHHHHCEEC----
T ss_pred cccCccchhhhhccccccCccccccccccccchhHHHHHHHHHHHhhhhhcccccccccCCcCccchhhHheeCcC----
Confidence 9999999999999988753 5679999999999999986
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccccccCCCCCCccCc--------------cccccccccccccHH
Q 010303 363 MHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIA 428 (513)
Q Consensus 363 ~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~ 428 (513)
|+|+++|||++||++||+||+|||+|+++|||+++++|+|||||.++ |||+|+++|+||||+
T Consensus 162 ----~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNia 237 (321)
T 4dq1_A 162 ----KDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIA 237 (321)
T ss_dssp ----TTCCEECHHHHHHHHHHHCTTCSCCEEECCCGGGTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHH
T ss_pred ----CCCCchhHHHHHHHHHhcCCCCceeEEEecChHHhccCCCCCCceEEEEEEECCEEEEEEEchhhhHHHHhhccHH
Confidence 56889999999999999999999999999999999999999999877 999999999999999
Q ss_pred HHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCC
Q 010303 429 SYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIE 508 (513)
Q Consensus 429 ~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~ 508 (513)
+|++|++|||++||+++|+|+|+++|||||+||+|++++||+|+|+++|+|+||++ ++|+||++|||+|+||+|||+||
T Consensus 238 syalL~~miAq~~Gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~in~~-~~i~df~~eDf~l~~Y~~hp~Ik 316 (321)
T 4dq1_A 238 SYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD-KSIFDINYEDLEIVDYESHPAIK 316 (321)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCCEEEECCC-SCGGGCCGGGEEEESCCCCCCCC
T ss_pred HHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCCEEEECCC-CCcccCCHhHEEEeCCcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccC
Q 010303 509 MKMAV 513 (513)
Q Consensus 509 ~~~av 513 (513)
+||||
T Consensus 317 ~~vAV 321 (321)
T 4dq1_A 317 APIAV 321 (321)
T ss_dssp C----
T ss_pred ccccC
Confidence 99998
No 12
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=7.8e-95 Score=732.60 Aligned_cols=270 Identities=36% Similarity=0.656 Sum_probs=244.6
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCc
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (513)
++.|+||++||++||++|+.++||||+||+|+||+++||||++|||++||||++||++++||||||+|+||+++|+++|+
T Consensus 2 ~~~m~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~G~tn~~~L~e~gv 81 (327)
T 3v8h_A 2 PGSMKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGC 81 (327)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC--CCCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHTTCCBHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHcCCccCCCCCCceEEecCceEEEecccCCcccccccccHHHHHHHHHHHHhCCccHHHHHHcCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccc--hhHhHhhcCCCcCCCCCccccccccccccccccccccCC-------------------CCCC--------c
Q 010303 321 HIWDGNA--SREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD-------------------YSGQ--------G 371 (513)
Q Consensus 321 ~iW~~~~--~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~-------------------~~~~--------~ 371 (513)
+|||+|+ +++||++. ..+++|+||++||+|||+|++ |.+|+++ ++|+ +
T Consensus 82 ~IWd~wa~~~~~~ld~~--~~~e~GdLGpvYG~QWR~~~a-y~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~~~ 158 (327)
T 3v8h_A 82 KVWDANANENAQWLANP--YRRGADDLGDVYGVQWRRWPG-YKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKA 158 (327)
T ss_dssp CTTHHHHHTCHHHHTCT--TCCSTTBCCSCTHHHHHHEEE-EEEEETTCHHHHHHHHHTTCEEEEEEEETTEEEEEEEEE
T ss_pred cccccchhhhhhhhccc--ccccCCCCCcchhhHhhhccc-cccccccchhhhhhhhcccceeccccCCCcccccccccc
Confidence 9999999 78999872 125689999999999999997 6666653 4567 8
Q ss_pred chHHHHHHHHHhcCCCCcceEEEccCccccccCCCCCCccCc----------------cccccccccccccHHHHHHHHH
Q 010303 372 FDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA----------------QRSADMGLGVPFNIASYALLTC 435 (513)
Q Consensus 372 ~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~----------------qRS~D~~lG~p~Ni~~y~~L~~ 435 (513)
+|||++||++||+||+|||+|+++|||+++++|+|||||.++ |||+|++||+||||++|++|++
T Consensus 159 iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~malpPCh~~~qF~~~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~ 238 (327)
T 3v8h_A 159 IDQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLT 238 (327)
T ss_dssp ECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTTTEEEEEEEEEEEETTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCccceEEEecChhHhccCCCCCCceEEEEeeeecCCeEEEEEEeehhhhHhHhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999654 9999999999999999999999
Q ss_pred HHHHHcCCcceeEEEEEccccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCc-----------ccCCeEEeCCCCC
Q 010303 436 MIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSF-----------VAEDFKLIGYDPH 504 (513)
Q Consensus 436 ~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~-----------~~~df~l~~Y~~~ 504 (513)
|||++||+++|+|+|+++|||||+||+|++++||+|+|+++|+|+||+++++|+|| ++|||+|+||+||
T Consensus 239 miA~~~gl~~G~~~h~~gdaHIY~nHie~~~eqL~R~p~~~P~l~i~~~~~~i~d~~~y~~~w~~~~~~~Df~l~~Y~~h 318 (327)
T 3v8h_A 239 LVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLERVEPSDFTLVGYRHH 318 (327)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCEEEECTTSCCHHHHCCCCTTHHHHCCGGGEEEESCCCC
T ss_pred HHHHHhCCeeeEEEEEEeeeEeehhHHHHHHHHhCCCCCCCCEEEECCCCCCHHHhhcccccccccCCccceEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred CCCCccccC
Q 010303 505 QKIEMKMAV 513 (513)
Q Consensus 505 ~~i~~~~av 513 (513)
|+|||||||
T Consensus 319 p~Ik~~~AV 327 (327)
T 3v8h_A 319 EPLSAPMAV 327 (327)
T ss_dssp ---------
T ss_pred CcCCCCccC
Confidence 999999998
No 13
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=100.00 E-value=5.6e-94 Score=728.86 Aligned_cols=262 Identities=52% Similarity=0.894 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCcccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (513)
|+||++||++||++|+.++||||+||+|+||+||||||++|||+|||||++||++++||||||+|+||++.|++.||+||
T Consensus 2 e~qYldLl~~IL~~G~~k~dRTGtgT~SvFG~q~rfdL~~gFPlLTTKkv~~Ksii~ELLWFl~G~Tn~~~L~e~gv~IW 81 (315)
T 3uwl_A 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELLWFLKGDTNIRYLLERNNHIW 81 (315)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTT
T ss_pred hHHHHHHHHHHHHcCCCcCCCCCCceEEEeeeeEEEeccCCCceeeeccchHHHHHHHHHHHHcCCccHHHHHHcCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhHhhcCCCcC--------------------------------------CCCCccccccccccccccccccccC
Q 010303 324 DGNASREYLDSVGLTDR--------------------------------------EEGDLGPVYGFQWRHFGARYTNMHA 365 (513)
Q Consensus 324 ~~~~~~~~l~~~~~~~~--------------------------------------~~g~lg~~YG~~wR~~~~~~~~~~~ 365 (513)
|+|+.++|+++.++... +.|++|++||+|||+|++
T Consensus 82 d~wa~~~~l~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~f~~~i~~d~~~~~~~GdlGpvYG~QwR~~~~------- 154 (315)
T 3uwl_A 82 DEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWET------- 154 (315)
T ss_dssp CHHHHHHHHHSSSCCC---------------------CHHHHHHHHHHHCHHHHHHHSBCCSSHHHHHHCEEC-------
T ss_pred cccchhhhhhcccccCcccccccceeeccchhhhhhhhHHHHhhhhhccccccccccCcccccCccccccccC-------
Confidence 99999999988765311 128999999999999975
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCcceEEEccCccccccCCCCCCccCc--------------cccccccccccccHHHHH
Q 010303 366 DYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYA 431 (513)
Q Consensus 366 ~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~ 431 (513)
++++++|||++||++||+||+|||+|+++|||+++++|+|||||.++ |||+||+||+||||++|+
T Consensus 155 -~~g~~iDQi~~vi~~Lk~nP~sRR~i~s~Wnp~~~~~~~lpPCh~~~qf~v~~~~L~~~lyqRS~D~~lG~pfNiasya 233 (315)
T 3uwl_A 155 -KDGSFIDQLANVIEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYA 233 (315)
T ss_dssp -TTSCEECHHHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHH
T ss_pred -CCCCcchHHHHHHHHhccCCCCCeEEEEecCHHHHhcCCccccceEEEEEECCCeEEEEEEeehhhhhhcccHHHHHHH
Confidence 35789999999999999999999999999999999999999999877 999999999999999999
Q ss_pred HHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccc
Q 010303 432 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKM 511 (513)
Q Consensus 432 ~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~ 511 (513)
+|++|||++||++||+|+|+++|+|||+||+|+|++||+|+|+++|+|+||+++++|+||+++||+|+||+|||+|||||
T Consensus 234 lL~~miA~~~gl~~G~~~h~~gd~HIY~nh~e~~~~ql~R~p~~~P~L~in~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~ 313 (315)
T 3uwl_A 234 LLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEGYDPHPTIKAPI 313 (315)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCCGGGCCGGGEEEESCCCCCCCCCCC
T ss_pred HHHHHHHHHhCCccceEEEEeeeeEeeHhHHHHHHHHhCCCCCCCCeEEECCCCCccccCCHHHEEEeCCCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 010303 512 AV 513 (513)
Q Consensus 512 av 513 (513)
||
T Consensus 314 AV 315 (315)
T 3uwl_A 314 AV 315 (315)
T ss_dssp --
T ss_pred cC
Confidence 98
No 14
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=100.00 E-value=3e-93 Score=704.00 Aligned_cols=249 Identities=48% Similarity=0.854 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCcccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (513)
|+||+++|++|+++|+.++||||+||+|+||+++||||++|||++||||++||++++||+||++|+||+++|+++|++||
T Consensus 2 m~~Yl~l~~~Il~~G~~~~dRTg~gT~s~fg~~~rfdL~~~fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~gv~iW 81 (264)
T 3qj7_A 2 MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIW 81 (264)
T ss_dssp CCHHHHHHHHHHHHCEEECCTTSCCEEEEESCEEEEEGGGCCCCCTTTTCCHHHHHHHHHHHHHTCCBSHHHHTTTCCTT
T ss_pred hHHHHHHHHHHHHcCcCCCCCCCCceEEEecceEEEecCCCCceeecccccHHHHHHHHHHHHcCCCcHHHHHHhCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcccccc
Q 010303 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (513)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~ 403 (513)
|+|+ +++|++|++||+|||+|++ |+++++|||++||++||+||+|||+|+++|||+++++
T Consensus 82 d~wa------------~e~GdlG~vYG~qwr~~~~--------~~g~~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~~ 141 (264)
T 3qj7_A 82 DEWA------------SDTGELGPIYGVQWRSWPA--------PSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIER 141 (264)
T ss_dssp GGGC------------CTTSBCCSCHHHHHHHEEC--------TTSCEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGG
T ss_pred hhhc------------ccCCCCccccchhheecCC--------CCcccHHHHHHHHHHHhcCCCCceEEEEccChhHhcc
Confidence 9996 5789999999999999985 5688999999999999999999999999999999999
Q ss_pred CCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHh
Q 010303 404 MALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 469 (513)
Q Consensus 404 ~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 469 (513)
|+|||||.++ |||+|+++|+||||++|++|++|||++||+++|+|+|+++|||||+||+|++++||
T Consensus 142 malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~qL 221 (264)
T 3qj7_A 142 MALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQL 221 (264)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCceEEEEEEEeCCEEEEEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHHh
Confidence 9999999877 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 470 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 470 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+|+|+++|+|+| +++++|+||++|||+|+||+|||+||+||||
T Consensus 222 ~R~p~~~P~l~i-~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 264 (264)
T 3qj7_A 222 SREPRPYPKLLL-ADRDSIFEYTYEDIVVKNYDPHPAIKAPVAV 264 (264)
T ss_dssp TSCCCCCCEEEE-ECCSSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred cCCCCCCCEEEe-CCCCChhcCCHhHEEEECCcCCCccCccccC
Confidence 999999999999 9999999999999999999999999999998
No 15
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=100.00 E-value=2.4e-90 Score=686.91 Aligned_cols=250 Identities=50% Similarity=0.910 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCcccc
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (513)
|+||+++|++|+++|+.++||||++|+|+||+++||||+++||++||||++||++++||+|||+|+||+++|+++|++||
T Consensus 1 ~~~Yl~l~~~Il~~G~~~~drtG~~T~s~fg~~~r~dl~~~fPllTtkk~~~ks~i~ELlWfl~G~tn~~~l~~~gv~iW 80 (264)
T 2g8o_A 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW 80 (264)
T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHcCcCccCCCCCeEEEEeeeEEEeecCCCCceeeccccchhhhHHHHHHHHcCCCcHHHHHHcCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCcccccc
Q 010303 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (513)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~ 403 (513)
|+|+ +++|++|++||+|||+|+.. +|+++|||++||++||+||+|||+|+++|||+++++
T Consensus 81 d~~~------------~~~G~lG~vYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk~nP~sRR~i~s~wnp~dl~~ 140 (264)
T 2g8o_A 81 DEWA------------DENGDLGPVYGKQWRAWPTP--------DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDK 140 (264)
T ss_dssp GGGC------------CTTSBCCSCHHHHHHHEEET--------TTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGG
T ss_pred hhcc------------CCCCCcccchhHHHhhccCC--------CCCchHHHHHHHHHHhcCCCCceEEEEecChhHhhc
Confidence 9997 46899999999999999742 366899999999999999999999999999999999
Q ss_pred CCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHHHHh
Q 010303 404 MALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 469 (513)
Q Consensus 404 ~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 469 (513)
|+|||||.++ |||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++++||
T Consensus 141 m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~v~~qL 220 (264)
T 2g8o_A 141 MALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQL 220 (264)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCcceEEEEEEECCEEEEEEEhhhhHHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeccchHHHHHHHh
Confidence 9999999877 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 470 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 470 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+|+|+++|+|+||+++++|+||++|||+|+||+|||+||+||||
T Consensus 221 ~r~p~~~P~l~i~~~~~~~~d~~~~df~l~~Y~~hp~ik~~~av 264 (264)
T 2g8o_A 221 SREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264 (264)
T ss_dssp TSCCCCCCEEEECCCCSSTTCCCGGGEEEESCCCCCCCCCCCCC
T ss_pred ccCCCCCCeeecCCCCCchhcCChhHEEEeCCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999998
No 16
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=100.00 E-value=8.4e-91 Score=694.34 Aligned_cols=253 Identities=48% Similarity=0.856 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhh------
Q 010303 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE------ 317 (513)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~------ 317 (513)
|+||+++|++|+++|+.++||||+||+|+||+++||||++|||++||||++||++++||+|||+|+||+++|++
T Consensus 1 ~~qYl~l~~~Il~~G~~~~dRTG~gT~sifg~q~r~dl~~gfPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~~~~~~ 80 (286)
T 1tis_A 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL 80 (286)
T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHhhhcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEcc
Q 010303 318 -KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAW 396 (513)
Q Consensus 318 -~~~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w 396 (513)
+|++|||+|++++||++ .+++|++|++||+|||+|+ ++|||++||++||+||+|||+|+++|
T Consensus 81 ~~gv~iWd~~~~~~~l~~----~~~~GdlG~vYG~qwR~~~-------------~~DQi~~vI~~Lk~nP~SRR~ivs~W 143 (286)
T 1tis_A 81 IQGKTVWDENYENQAKDL----GYHSGELGPIYGKQWRDFG-------------GVDQIIEVIDRIKKLPNDRRQIVSAW 143 (286)
T ss_dssp SSSCCTTHHHHTTTTGGG----TCCTTBCCSCHHHHHHCBT-------------TBCHHHHHHHHHHHSTTCSCCBCCCC
T ss_pred ccCCcccccccccchhhh----cccCCcchhhhHHHHhcCC-------------cchHHHHHHHHHhcCCCCccEEEEec
Confidence 89999999999999987 3678999999999999996 58999999999999999999999999
Q ss_pred CccccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccch
Q 010303 397 NPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHV 462 (513)
Q Consensus 397 np~~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~ 462 (513)
||+++++|+|||||.++ |||||++||+||||++|++|++|||++||+++|+|+|+++|+|||+||+
T Consensus 144 np~dl~~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~ 223 (286)
T 1tis_A 144 NPAELKYMALPPCHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHV 223 (286)
T ss_dssp CGGGGGGCSSCCSEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCC
T ss_pred ChhHhhcCCCCCceEEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEeeeEeeHHHH
Confidence 99999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcCCCCCCeEEeCCC------------CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 463 RPLEEQLQKLPKPFPILKINPE------------KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 463 ~~~~~~l~r~p~~~P~l~~~~~------------~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
|++++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+||+||||
T Consensus 224 e~v~~qL~R~p~~~P~l~i~~~~~~~~~~~~~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 286 (286)
T 1tis_A 224 EQCKEILRREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 (286)
T ss_dssp TTTGGGSSCCCCSCCCCEECCCCGGGGGSCHHHHHHHHHTCCGGGEECSSCCCCCCCCCCCCC
T ss_pred HHHHHHHcCCCCCCCeEEECCcccccccccccccCCchhcCCceeEEEeCCCCCCcCCcCccC
Confidence 9999999999999999999998 89999999999999999999999999998
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=100.00 E-value=1.2e-89 Score=706.04 Aligned_cols=253 Identities=51% Similarity=0.918 Sum_probs=225.1
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCc
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (513)
.-.|+||+++|++|+++|+.++||||+||+|+||+++||||++|||++||||++||++++||+|||+|+||+++|+++|+
T Consensus 94 ~g~~~~Yl~l~~~Il~~G~~~~dRTG~~T~s~fg~~~rfdl~~gfPllTtkk~~~k~~i~EllWfl~G~tn~~~L~~~gv 173 (360)
T 3ix6_A 94 IGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGV 173 (360)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhCcCCCCCCCccEEEeccceeEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccc
Q 010303 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (513)
Q Consensus 321 ~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~ 400 (513)
+|||+|+ +++|++|++||+|||+|++. +|+++|||++||++||+||+|||+|+++|||++
T Consensus 174 ~iWd~wa------------~~~g~lG~vYG~qwR~~~~~--------~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~d 233 (360)
T 3ix6_A 174 TIWDEWA------------DENGDLGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPAL 233 (360)
T ss_dssp CTTGGGC------------CTTSBCSSCHHHHHHHEECT--------TSCEECHHHHHHHHHHHCTTCSCCEEECCCHHH
T ss_pred Cccchhc------------ccCCCCccchhhhheeecCC--------CCCchHHHHHHHHHHhcCCCcceeEEEecChHH
Confidence 9999996 67899999999999999863 477899999999999999999999999999999
Q ss_pred cccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEccccccccchhhHH
Q 010303 401 LKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 466 (513)
Q Consensus 401 ~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~ 466 (513)
+++|+|||||.++ |||||++||+||||++|++|++|||++||+++|+|+|+++|||||+||+|+++
T Consensus 234 l~~mal~PCh~~~qF~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~ 313 (360)
T 3ix6_A 234 VDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQAR 313 (360)
T ss_dssp HTTCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHH
T ss_pred hccCCCCCCcEEEEEEEeCCEEEEEEEehhhhHHHhhhhHHHHHHHHHHHHHHHhCCcceEEEEEEeeeEEeHHHHHHHH
Confidence 9999999999877 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 467 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 467 ~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
+||+|+|+++|+|+||+++++|+||++|||+|+||+|||+||+||||
T Consensus 314 ~qL~R~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 360 (360)
T 3ix6_A 314 LQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 360 (360)
T ss_dssp HHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEEC-------------
T ss_pred HHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCcCCccccC
Confidence 99999999999999999999999999999999999999999999998
No 18
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00 E-value=1.7e-88 Score=676.79 Aligned_cols=252 Identities=39% Similarity=0.681 Sum_probs=242.9
Q ss_pred hhHHHHHHHHHHHHHcCccccC----------CCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHH-hhcCCC
Q 010303 242 HEEYLYLRLVQDIISDGNLKDD----------RTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLW-FISGST 310 (513)
Q Consensus 242 ~~~~~Yl~l~~~Il~~G~~~~d----------RtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW-~l~G~~ 310 (513)
.+|+||+++|++|+++|+.++| |||+||+|+||+++||| +++||++||||++||++++|||| |++|+|
T Consensus 2 ~~~~~Yl~l~~~Il~~G~~~~d~~~r~~~~~drTg~~T~s~fg~~~r~d-~~~fPllTtkk~~~k~~i~EllWifl~G~t 80 (278)
T 1bkp_A 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAWKTAIKELLWIWQLKSN 80 (278)
T ss_dssp CHHHHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEEC-SSSCCCCSSSCCCHHHHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHHHHHcCccCCCcccccccccCCCCCceEEecceEEEEc-cccccccccccccHHhhHHHHHHHHHcCCC
Confidence 4699999999999999998876 89999999999999999 99999999999999999999999 999999
Q ss_pred chhhhhhcCccccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcc
Q 010303 311 NAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRR 390 (513)
Q Consensus 311 ~~~~l~~~~~~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR 390 (513)
|+++|+++|++|||+|+ +++|++|++||+|||+|+.. ++|+++|||++||++||+||+|||
T Consensus 81 n~~~L~~~gv~iWd~w~------------~~~gdlG~vYG~qwr~~~~~-------~~g~~iDQi~~vI~~Lk~nP~SRR 141 (278)
T 1bkp_A 81 DVNDLNMMGVHIWDQWK------------QEDGTIGHAYGFQLGKKNRS-------LNGEKVDQVDYLLHQLKNNPSSRR 141 (278)
T ss_dssp BHHHHHTTTCCTTGGGC------------CTTSBCBSCTHHHHHCCCEE-------ETTEEECHHHHHHHHHHHSTTCSC
T ss_pred cHHHHHHhCCCcccccc------------ccCCcccccccHhhhhccCC-------CCCcchHHHHHHHHHHhcCCCCCc
Confidence 99999999999999997 57899999999999999632 346679999999999999999999
Q ss_pred eEEEccCccccccCCCCCCccCc--------------cccccccccccccHHHHHHHHHHHHHHcCCcceeEEEEEcccc
Q 010303 391 IVLSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 456 (513)
Q Consensus 391 ~i~~~wnp~~~~~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~~y~~L~~~iA~~~gl~~G~~~~~~~~~H 456 (513)
+|+++|||+++++|+|||||.++ |||||++||+||||++|++|++|||++||+++|+|+|+++|+|
T Consensus 142 ~ivs~wnp~dl~~m~lpPC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaH 221 (278)
T 1bkp_A 142 HITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCH 221 (278)
T ss_dssp CEEESCCTTTGGGBSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEE
T ss_pred EEEEecChhhhhccCCCCeeEEEEEEEECCEEEEEEEhhhhHHHhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEEEeEE
Confidence 99999999999999999999877 9999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 010303 457 VYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513 (513)
Q Consensus 457 IY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 513 (513)
||+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+||+||||
T Consensus 222 IY~nh~e~v~~qL~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 278 (278)
T 1bkp_A 222 VYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278 (278)
T ss_dssp EEGGGHHHHHHHHHSCCCCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred EcHHHHHHHHHHhcCCCCCCCEEEECCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 999999999999999999999999999999999999999999999999999999998
No 19
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=100.00 E-value=8.7e-65 Score=500.58 Aligned_cols=206 Identities=22% Similarity=0.287 Sum_probs=194.8
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeEEeeceeEEEeCCCCCcccccccccccchhhhhHHhhcCCCchhhhhhcCc
Q 010303 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (513)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~~~g~~~~~dl~~~fPllTtkk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (513)
.+.+++|++++++|+++|. ++||||++|+|+||+++|||. |++ +||++||++++||+||++|+||+++|+++++
T Consensus 6 ~t~~~~y~~l~~~Il~~G~-~~drtg~~t~s~~g~~~r~~~----P~~-~kk~~~k~~i~EllWfl~G~tn~~~l~~~~~ 79 (246)
T 1b5e_A 6 MTVEEIRLHLGLALKEKDF-VVDKTGVKTIEIIGASFVADE----PFI-FGALNDEYIQRELEWYKSKSLFVKDIPGETP 79 (246)
T ss_dssp BCHHHHHHHHHHHHHTTCC-EECTTSCEEEEEEEEEEECCS----SCS-SSCCCHHHHHHHHHHHHHTCSBGGGSSSSCC
T ss_pred CCHHHHHHHHHHHHHHcCC-CcCCCCCceEEECcEEEEEcC----ccc-cccccHHHHHHHHHHHhhCCCcHHHHHhhcc
Confidence 5889999999999999995 999999999999999999982 998 8999999999999999999999999999999
Q ss_pred cccCccchhHhHhhcCCCcCCCCCccccccccccccccccccccCCCCCCcchHHHHHHHHHhcCCCCcceEEEccCccc
Q 010303 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (513)
Q Consensus 321 ~iW~~~~~~~~l~~~~~~~~~~g~lg~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~wnp~~ 400 (513)
+|||+|+ +++|++|++|| ||.|+. +++|||++||++||+||+|||+|+++|||++
T Consensus 80 ~iwd~~~------------~~~g~lg~~YG--wR~~~~-----------~~~DQi~~vI~~Lk~nP~SRR~i~s~wnp~~ 134 (246)
T 1b5e_A 80 KIWQQVA------------SSKGEINSNYG--WAIWSE-----------DNYAQYDMCLAELGQNPDSRRGIMIYTRPSM 134 (246)
T ss_dssp HHHHHHS------------CTTSBCSCCHH--HHHHCG-----------GGTCHHHHHHHHHHHCTTCSCCEEECCCTTH
T ss_pred hhhhhhc------------ccCCCCCCCCC--eeECCC-----------CCchHHHHHHHHHhcCCCCCeEEEEecCchh
Confidence 9999996 46899999999 999862 3699999999999999999999999999998
Q ss_pred cc-----cCCCCCCccCc--------------cccccccccccccHH-----HHHHHHHHHHHH--cCCcceeEEEEEcc
Q 010303 401 LK-----LMALPPCHMFA--------------QRSADMGLGVPFNIA-----SYALLTCMIAHV--CDLAPGDFIHVIGD 454 (513)
Q Consensus 401 ~~-----~~~l~PC~~~~--------------qRS~D~~lG~p~Ni~-----~y~~L~~~iA~~--~gl~~G~~~~~~~~ 454 (513)
+. +|+|||||.++ |||||+++|+||||+ +|++|++|||++ ||+++|+|+|+++|
T Consensus 135 ~~d~~~~~m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~gd 214 (246)
T 1b5e_A 135 QFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGS 214 (246)
T ss_dssp HHHTTGGGCCCCCCEEEEEEEEETTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEE
T ss_pred hcccccccccCCceeEEEEEEEECCEEEEEEEhhhhhhhhhccchHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEEEe
Confidence 64 79999999877 999999999999999 999999999999 99999999999999
Q ss_pred ccccccchhhHHHHhhcCCCCCC
Q 010303 455 AHVYRNHVRPLEEQLQKLPKPFP 477 (513)
Q Consensus 455 ~HIY~~h~~~~~~~l~r~p~~~P 477 (513)
+|||+||+|++++||+|+|.+.+
T Consensus 215 aHIY~nh~e~~~~~L~r~~~~~~ 237 (246)
T 1b5e_A 215 LHVYSRHFYLVDHWWKTGETHIS 237 (246)
T ss_dssp EEEEGGGHHHHHHHHHHCCSCCC
T ss_pred EEEcHHHHHHHHHHHhhCCcccc
Confidence 99999999999999999998654
No 20
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=100.00 E-value=3.4e-43 Score=346.16 Aligned_cols=186 Identities=37% Similarity=0.634 Sum_probs=157.2
Q ss_pred CCCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhc------cCCCCCCcEEEEccccccccCCCCCCCCCC
Q 010303 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGR 89 (513)
Q Consensus 16 ~~~~~mrki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~------~~~~~~~~~vIMGRkTyeslp~~~~pl~~R 89 (513)
...+.||+|++|||+|.||+||.+|+|||++|+||+||+++|++ .++|++.++||||||||||||.+++|||+|
T Consensus 21 ~~~~~mr~i~lIvA~s~ng~IG~~g~LPW~lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~~rPLp~R 100 (240)
T 3rg9_A 21 ISRPPLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNR 100 (240)
T ss_dssp --CCCCCCEEEEEEEETTCEEESSSSCSCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGGGSSCTTS
T ss_pred ccCCCCCeEEEEEEECCCCcEECCCCcCCCCHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhhccCCCCC
Confidence 44678999999999999999999999999999999999999987 356777899999999999999666899999
Q ss_pred cEEEEcCCCCCCC-----C--------CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCC---CcCE
Q 010303 90 LNVVLTRSGSFDI-----A--------TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDA 153 (513)
Q Consensus 90 ~~iVlSrt~~~~~-----~--------~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~---lvDe 153 (513)
.||||||+..... + ..+++.+++|+++|++.+++.+...+.++||||||++||++||+++ +||+
T Consensus 101 ~nIVlSr~~~~~~~~~~~~~~~~~~~~~~~~v~v~~sl~eal~~l~~~~~~~~~~~I~VIGGa~IY~~~L~~~~~~l~D~ 180 (240)
T 3rg9_A 101 LNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQA 180 (240)
T ss_dssp EEEEECSSCCHHHHHTTCSSHHHHHHHGGGEEEESSCHHHHHHHTTSHHHHHHEEEEEECCCHHHHHHHTSTTGGGGEEE
T ss_pred eEEEEccCcccccccccccccccccccCCCCEEEECCHHHHHHHHhccccccCCCeEEEECCHHHHHHHHhcCccccCCE
Confidence 9999999974310 0 0356889999999999987531000136899999999999999888 9999
Q ss_pred EEEEEEC-ccccCCccC--CCCCCCC-----ceeeeeecC---cccCCccEEEEEEEEc
Q 010303 154 IHITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFP---IVENNIRYCLSTYVRV 201 (513)
Q Consensus 154 l~LT~I~-~~~~GD~fF--P~~~~~~-----f~l~~~~~~---~~e~~~~~~f~~Y~r~ 201 (513)
++||+|+ ..++||+|| |+++.+. |++++.+.. .+++++.|+|++|+|+
T Consensus 181 l~lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~f~~y~r~ 239 (240)
T 3rg9_A 181 IHRTVVRPASNSCSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPR 239 (240)
T ss_dssp EEEEEEESCCSSCCEECCCCCTTCCCTTSCCEEEEEECCCEECSSTTCCEEEEEEEEEC
T ss_pred EEEEEEcCCCcCcceecCCCCCChhhcccCceEEEEeeccccccCCCCCceEEEEEEeC
Confidence 9999999 889999999 9998877 999875432 2458999999999997
No 21
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=100.00 E-value=2.1e-42 Score=334.03 Aligned_cols=182 Identities=38% Similarity=0.642 Sum_probs=155.6
Q ss_pred CCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhcc---CCCCCCcEEEEccccccccCCCCCCCCCCcEEEE
Q 010303 18 PNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT---SDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVL 94 (513)
Q Consensus 18 ~~~mrki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~---~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVl 94 (513)
|+.|++|++|+|+|+||+||.+|+|||++|+||+||+++|+++ ++|++.++|||||||||++|.++|||++|+||||
T Consensus 1 m~~~~~i~livA~s~dg~IG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~~~Pl~~r~niVl 80 (206)
T 3nzb_X 1 MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVI 80 (206)
T ss_dssp CCCCSCEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGGGCSCTTSEEEEE
T ss_pred CCCCCEEEEEEEECCCCcEeCCCCcCCCChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhcccCCCCCeEEEE
Confidence 4669999999999999999999999999999999999999853 3445579999999999999865689999999999
Q ss_pred cCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCC---CCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCC-
Q 010303 95 TRSGSFDIATVENVVICGSIGSALELLAASPYCL---SIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIP- 170 (513)
Q Consensus 95 Srt~~~~~~~~~~v~v~~sleeai~~l~~~~~~~---~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP- 170 (513)
||+... ...+++.+++|+++|++.+++....+ ++++||||||++||++||++++||+++||+||..++||+|||
T Consensus 81 Sr~~~~--~~~~~~~v~~sl~eal~~l~~~~~~~~~~~~~~i~ViGG~~iy~~~L~~~l~Del~lT~i~~~~~gd~~FP~ 158 (206)
T 3nzb_X 81 TRNESL--DLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPL 158 (206)
T ss_dssp CSSCCC--CCCSSCEEESSHHHHHHHHHHHSCSSSSSEEEEEEECCCHHHHHHHHHSTTEEEEEEEEECSCCCCSEECSS
T ss_pred ccCCCC--CCCCCEEEECCHHHHHHHHhccccccccCCCCcEEEECcHHHHHHHhhCCCCCEEEEEEcccccCCCccCCc
Confidence 999753 12356889999999999998641000 247899999999999999999999999999999999999999
Q ss_pred CCCCC----Cceeeeeec------------CcccCCccEEEEEEEEc
Q 010303 171 SIDSS----VFQPWYSSF------------PIVENNIRYCLSTYVRV 201 (513)
Q Consensus 171 ~~~~~----~f~l~~~~~------------~~~e~~~~~~f~~Y~r~ 201 (513)
.++.. .|++++.+. .++++++.|+|++|+|+
T Consensus 159 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~y~f~~y~r~ 205 (206)
T 3nzb_X 159 KFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD 205 (206)
T ss_dssp CTTSGGGTTTCEECCHHHHHHHHTSCCCCSCEEETTEEEEEEEEECC
T ss_pred ccCcccccCCcEEEEEeeccccccccccccccccCCeeEEEEEEEEc
Confidence 88753 699886432 34689999999999985
No 22
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=100.00 E-value=2.2e-41 Score=316.23 Aligned_cols=158 Identities=36% Similarity=0.637 Sum_probs=144.9
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~ 102 (513)
+|++|+|+|+||+||++|+|||++|+|++||+++|+ +++|||||||||++| +|||+|+|||+||+...
T Consensus 5 ~i~li~A~s~dg~Ig~~g~lpW~~~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 72 (165)
T 3s9u_A 5 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGY-- 72 (165)
T ss_dssp EEEEEEEEETTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHhhc-------CCEEEEcchHHhhhh---hccCCCeEEEECCCCcc--
Confidence 699999999999999999999999999999999998 899999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeee
Q 010303 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (513)
Q Consensus 103 ~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (513)
..+++.+++|++++++.+++. ++|||+||++||++|| ++||+++||+||..++||+|||.++...|++++.
T Consensus 73 -~~~~v~v~~~~~~al~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~ip~~~~Gd~~Fp~~~~~~~~l~~~ 143 (165)
T 3s9u_A 73 -HVEGCEVAHSVEEVFELCKNE------EEIFIFGGAQIYDLFL--PYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFV 143 (165)
T ss_dssp -CCTTCEEESSHHHHHHHTTTC------SEEEECCCHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCCTTEEEEEE
T ss_pred -CCCCEEEECCHHHHHHHhhcC------CCEEEECCHHHHHHHH--hhCCEEEEEEccccccCCCcCCCCChHHCEEEEE
Confidence 346788889999999998764 6899999999999999 8999999999999999999999999889999876
Q ss_pred ecC--cccCCccEEEEEEEEc
Q 010303 183 SFP--IVENNIRYCLSTYVRV 201 (513)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (513)
+.. .+++++.|+|++|+|+
T Consensus 144 ~~~~~~~~~~~~~~f~~y~r~ 164 (165)
T 3s9u_A 144 EKGLTDEKNPYTYYYHVYEKQ 164 (165)
T ss_dssp EECCCSSSSCSCEEEEEEEEC
T ss_pred EeccccCCCCceEEEEEEEEC
Confidence 543 4678899999999996
No 23
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=100.00 E-value=4e-41 Score=317.67 Aligned_cols=160 Identities=31% Similarity=0.546 Sum_probs=144.0
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~ 102 (513)
+|++|+|+|+||+||++|+|||++|+|+++|+++|+ +++||||||||||+| +|||+|+||||||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~lp~Dl~~Fk~~T~-------g~~vIMGRkTyesi~---~plp~R~niVlSr~~~~-- 69 (178)
T 3tq8_A 2 IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITL-------GKPIVMGRRTFDSIG---KPLPHRRNIVITQQKNL-- 69 (178)
T ss_dssp EEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCcCHHHHHHHHHhhc-------CCEEEEechHHhhhh---hccCCCeEEEEcCCCCc--
Confidence 599999999999999999999999999999999998 799999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeee
Q 010303 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (513)
Q Consensus 103 ~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (513)
..+++.+++|+++|++.+++. ++||||||++||++|| ++||+++||+||..++||+|||.++...|++++.
T Consensus 70 -~~~~v~v~~sl~eal~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~w~l~~~ 140 (178)
T 3tq8_A 70 -IIEGCDIFYSLDDALSALTKE------PEVIIIGGARIFKEAL--PKADKMILTIINHSFEGDVYFPEWNDKEWKITSQ 140 (178)
T ss_dssp -CCTTSEEESSHHHHHHHTTTC------SEEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCTTSEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhCC------CCEEEECCHHHHHHHH--HhCCEEEEEEccccccccCcCCCCChHHCEEEEE
Confidence 346788889999999998753 6999999999999999 5999999999999999999999999888999876
Q ss_pred ecC--cccCCccEEEEEEEEccc
Q 010303 183 SFP--IVENNIRYCLSTYVRVRS 203 (513)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~~~ 203 (513)
+.. .+++++.|+|++|+|+.+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~~~ 163 (178)
T 3tq8_A 141 IKHERDEKNPYPFQFLELRRLEN 163 (178)
T ss_dssp EEECCC--CCSCEEEEEEEECCC
T ss_pred EeccccccCCccEEEEEEEECCc
Confidence 542 356889999999999744
No 24
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=100.00 E-value=2.4e-41 Score=315.15 Aligned_cols=158 Identities=34% Similarity=0.585 Sum_probs=143.9
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~ 102 (513)
++++|+|+|+||+||.+|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+|||+||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~~~~D~~~Fk~~t~-------g~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 69 (162)
T 3ia4_A 2 IVSMIAALANNRVIGLDNKMPWHLPAELQLFKRATL-------GKPIVMGRNTFESIG---RPLPGRLNIVLSRQTDY-- 69 (162)
T ss_dssp EEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECCCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHHhc-------CcEEEEEchHHhhhh---hhcCCCeEEEEcCCCCC--
Confidence 599999999999999999999999999999999998 799999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeee
Q 010303 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (513)
Q Consensus 103 ~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (513)
..+++.+++|++++++.+++ .++|||+||+++|++|| ++||+++||+||..++||+|||.++.+.|++++.
T Consensus 70 -~~~~~~v~~s~~~al~~l~~------~~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~gd~~Fp~~~~~~w~~~~~ 140 (162)
T 3ia4_A 70 -QPEGVTVVATLEDAVVAAGD------VEELMIIGGATIYNQCL--AAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEH 140 (162)
T ss_dssp -CCTTSEEESSHHHHHHHHTT------CSEEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCGGGSCEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhC------CCCEEEECCHHHHHHHH--HhCCEEEEEEccccccccccCCCCChHHCEEEEE
Confidence 34678899999999999875 26999999999999999 6999999999999999999999999888999876
Q ss_pred ecC--cccCCccEEEEEEEEc
Q 010303 183 SFP--IVENNIRYCLSTYVRV 201 (513)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (513)
+.. .+++++.|+|++|+|+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~ 161 (162)
T 3ia4_A 141 ESYAADDKNPHNYRFSLLERV 161 (162)
T ss_dssp EEECCBTTBCSCEEEEEEEEC
T ss_pred EeccccCCCCccEEEEEEEEC
Confidence 432 3568899999999996
No 25
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=100.00 E-value=4.4e-41 Score=312.28 Aligned_cols=156 Identities=35% Similarity=0.652 Sum_probs=142.0
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010303 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (513)
Q Consensus 24 i~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~ 103 (513)
|++|+|+|+||+||++|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+||||||+. .
T Consensus 2 i~li~A~s~~g~IG~~g~lpW~l~~D~~~Fk~~t~-------~~~vIMGRkT~esi~---~plp~r~~iVlSr~~-~--- 67 (159)
T 3dau_A 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIILSSQP-G--- 67 (159)
T ss_dssp EEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSSC-C---
T ss_pred EEEEEEECCCCeEECCCCcCcCChhHHHHHHHHhc-------CCeEEEechHHhhcc---cccCCCEEEEECCCC-C---
Confidence 89999999999999999999999999999999998 789999999999997 699999999999997 4
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeeee
Q 010303 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (513)
Q Consensus 104 ~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (513)
..+++.+++|+++|++.++. .++|||+||+++|++|| ++||+++||+||..++||+|||.++.+.|++++.+
T Consensus 68 ~~~~~~v~~s~~~al~~~~~------~~~i~iiGG~~iy~~~l--~~~D~l~lT~i~~~~~Gd~~Fp~~~~~~~~~~~~~ 139 (159)
T 3dau_A 68 TDDRVTWVKSVDEAIAACGD------VPEIMVIGGGRVYEQFL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139 (159)
T ss_dssp SCTTSEEESSHHHHHHTTCS------CSCEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCCCGGGEEEEEEE
T ss_pred CCCCeEEECCHHHHHHHhcC------CCCEEEECCHHHHHHHH--hhCCEEEEEEcccccCccccCCCCChHHCEEEEEE
Confidence 45678889999999998753 47899999999999999 69999999999999999999999998889998754
Q ss_pred cC--cccCCccEEEEEEEEc
Q 010303 184 FP--IVENNIRYCLSTYVRV 201 (513)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (513)
.. .+++++.|+|++|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 3dau_A 140 FHDADAQNSHSYCFEILERR 159 (159)
T ss_dssp EECCBTTBSSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEC
Confidence 32 3578999999999985
No 26
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.4e-40 Score=313.21 Aligned_cols=162 Identities=31% Similarity=0.537 Sum_probs=147.0
Q ss_pred CceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010303 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (513)
Q Consensus 21 mrki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~ 100 (513)
||+|++|+|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||++|. |||++|+|||+||+...
T Consensus 22 ~r~i~~i~A~s~dG~IG~~g~lpW~~~~D~~~fk~~t~-------~~~vIMGRkTyesi~~--~plp~r~~iVlSr~~~~ 92 (190)
T 3ix9_A 22 TKKIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTL-------NHAILMGRVTFDGMGR--RLLPKRETLILTRNPEE 92 (190)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHTTT--CCCTTCEEEEECCSCCS
T ss_pred ceeEEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHhc-------CCeEEEcCcchhhcCc--cCCCCCEEEEEcCCCCC
Confidence 78899999999999999999999999999999999998 8999999999999974 79999999999999754
Q ss_pred CCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCC-CCCCCcee
Q 010303 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPS-IDSSVFQP 179 (513)
Q Consensus 101 ~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~-~~~~~f~l 179 (513)
..+++.+++|++++++.+++. +++|||+||++||++|| ++||+++||+||...+||+|||. ++...|++
T Consensus 93 ---~~~~~~v~~~~~eal~~lk~~-----~~~i~ViGG~~ly~~~l--~liDel~lt~ip~~g~Gd~lFp~~~~~~~~~l 162 (190)
T 3ix9_A 93 ---KIDGVATFHDVQSVLDWYSAQ-----EKNLYIVGGKQIFQAFE--PYLDEVIVTHIHARVEGDTYFPAEFDLSLFET 162 (190)
T ss_dssp ---CCSSSEEESSHHHHHHHHHTS-----CSCEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCCGGGEEE
T ss_pred ---CCCCEEEECCHHHHHHHHHhC-----CCCEEEECCHHHHHHHH--hhCCEEEEEEeCcccccCCcCCCCCCccccEE
Confidence 345677889999999999875 47999999999999999 69999999999999999999999 88778999
Q ss_pred eeeecC--cccCCccEEEEEEEEc
Q 010303 180 WYSSFP--IVENNIRYCLSTYVRV 201 (513)
Q Consensus 180 ~~~~~~--~~e~~~~~~f~~Y~r~ 201 (513)
++.+.. .+++++.|+|++|+|+
T Consensus 163 v~~~~~~~~~~~~~~~~f~~y~r~ 186 (190)
T 3ix9_A 163 VSSKFYTKDEKNPYDFTIQYRKRK 186 (190)
T ss_dssp EEEEEECCBTTBCSCEEEEEEEEC
T ss_pred EEEEeccCCCcCCceEEEEEEEEe
Confidence 876432 3578889999999997
No 27
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=100.00 E-value=4.4e-40 Score=312.89 Aligned_cols=178 Identities=35% Similarity=0.618 Sum_probs=155.9
Q ss_pred CceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 010303 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (513)
Q Consensus 21 mrki~livAvs~dG~IG~~g~LpW-~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~ 99 (513)
.|+|++++|+|+||+||.+|+||| ++|+|+++|++.|++..+|++.++|||||||||++|.+.|||++|+|||+||+..
T Consensus 1 ~r~i~~i~A~s~dG~Ig~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~~~~pl~~r~~iVlSr~~~ 80 (186)
T 1kmv_A 1 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK 80 (186)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCS
T ss_pred CceEEEEEEECCCCCEeCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCcccCCCCCCeEEEECCCCc
Confidence 478999999999999999999999 9999999999999865566777899999999999985468999999999999975
Q ss_pred CCCCCCCCE-EEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCce
Q 010303 100 FDIATVENV-VICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178 (513)
Q Consensus 100 ~~~~~~~~v-~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~ 178 (513)
. ..+++ ++++|++++++.|++.++..++++|||+||+++|++||++++||+++||++|..++||+|||.++...|+
T Consensus 81 ~---~~~~~~~v~~~~~~al~~lk~~~~~~~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~~g~d~~Fp~~~~~~~~ 157 (186)
T 1kmv_A 81 E---PPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK 157 (186)
T ss_dssp S---CCTTCSEEESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHHTSCSCEEEEEEEESSCCCCSEECCCCCTTTCE
T ss_pred c---CCCCCEEEECCHHHHHHHHhhcccccCCCeEEEEcCHHHHHHHhcCCCCCEEEEEEeCcccCCCeECCCCChhHcE
Confidence 3 34566 8889999999999875322346899999999999999999999999999999999999999999878899
Q ss_pred eeeee-----cCcccCCccEEEEEEEEc
Q 010303 179 PWYSS-----FPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 179 l~~~~-----~~~~e~~~~~~f~~Y~r~ 201 (513)
+++.. ...+++++.|+|++|+|+
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~f~~y~r~ 185 (186)
T 1kmv_A 158 LLPEYPGVLSDVQEEKGIKYKFEVYEKN 185 (186)
T ss_dssp ECSCCTTCCCSCEEETTEEEEEEEEEEC
T ss_pred EEEeccccccccccCCCceEEEEEEEEC
Confidence 98652 234678999999999996
No 28
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=100.00 E-value=8e-40 Score=304.86 Aligned_cols=159 Identities=28% Similarity=0.486 Sum_probs=144.1
Q ss_pred EEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCC
Q 010303 25 QVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIAT 104 (513)
Q Consensus 25 ~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~~ 104 (513)
++|+|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||++|. +|||+|+|||+||+... .
T Consensus 2 ~li~A~s~dg~IG~~g~lpW~~~~D~~~F~~~t~-------~~~viMGRkTyes~~~--~plp~r~~iVlS~~~~~---~ 69 (162)
T 3dfr_A 2 AFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTV-------GKIMVVGRRTYESFPK--RPLPERTNVVLTHQEDY---Q 69 (162)
T ss_dssp EEEEEECTTCEEEBTTBCSSCCHHHHHHHHHTTT-------TSEEEEEHHHHHHSSS--SSCTTSEEEEECSCTTC---C
T ss_pred EEEEEECCCCeEeCCCCCCCCcHHHHHHHHHHhc-------CCeEEEecchhhhccc--ccCCCCcEEEEcCCCCC---C
Confidence 5899999999999999999999999999999997 8999999999999973 69999999999999854 4
Q ss_pred CCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeeeec
Q 010303 105 VENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF 184 (513)
Q Consensus 105 ~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~~~ 184 (513)
.+++.+++|++++++.+++++ +++|||+||+++|++|| ++||+++||+||..++||+|||.++...|++++.+.
T Consensus 70 ~~~~~~~~~~~~~l~~lk~~~----~~~i~viGG~~l~~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~~~l~~~~~ 143 (162)
T 3dfr_A 70 AQGAVVVHDVAAVFAYAKQHL----DQELVIAGGAQIFTAFK--DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRT 143 (162)
T ss_dssp CTTSEEESSHHHHHHHHHHCC----SSCEEECCCHHHHHHTG--GGCCEEEEEEESSCCCCSEECCCCCGGGEEEEEEEE
T ss_pred CCCEEEECCHHHHHHHHhcCC----CCCEEEECCHHHHHHHH--hhCCEEEEEEecccccccCcCCCCChhHcEEEEEEc
Confidence 567877899999999999862 58999999999999999 799999999999999999999999877899987654
Q ss_pred -CcccCCccEEEEEEEEc
Q 010303 185 -PIVENNIRYCLSTYVRV 201 (513)
Q Consensus 185 -~~~e~~~~~~f~~Y~r~ 201 (513)
..+++++.|+|++|+|+
T Consensus 144 ~~~~~~~~~~~f~~y~r~ 161 (162)
T 3dfr_A 144 VEDTNPALTHTYEVWQKK 161 (162)
T ss_dssp ECCSSGGGCEEEEEEEEC
T ss_pred ccccCCCceEEEEEEEEC
Confidence 34578899999999996
No 29
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=100.00 E-value=1.8e-39 Score=319.06 Aligned_cols=174 Identities=33% Similarity=0.522 Sum_probs=151.8
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccC--------------------------------------CC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITS--------------------------------------DA 63 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW-~~peD~~~F~~~T~~~~--------------------------------------~~ 63 (513)
++.+++|++.||+||++|+||| |+|+||+||+++|++++ .+
T Consensus 26 ~~~~~~~~~~~~~IG~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~ 105 (238)
T 2bl9_A 26 TKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNAD 105 (238)
T ss_dssp SCCCTTCSCSSCEEEBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC---------------------
T ss_pred cEEEEEEecCCCeecCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCccccccccccccccccc
Confidence 5778889999999999999999 99999999999998431 13
Q ss_pred CCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHH
Q 010303 64 GKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (513)
Q Consensus 64 ~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~ 143 (513)
+.+++||||||||||+|.++||||+|+||||||+.... ...+++.+++|+++|++.+++. ++++|||+||++||+
T Consensus 106 ~~g~~VIMGRkTyEsi~~~~~PLp~R~nIVlSr~~~~~-~~~~~v~v~~sl~eal~~lk~~----~~~~I~ViGGa~Iy~ 180 (238)
T 2bl9_A 106 KLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKE-DVKEKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQVYR 180 (238)
T ss_dssp CCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCTT-TCCSSCEEESCHHHHHHHHHTC----CCSCEEEEECHHHHH
T ss_pred ccCCEEEEchhHhhhhcccccCcCCCEEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCCEEEECcHHHHH
Confidence 44799999999999998555799999999999987431 1246788889999999999875 367999999999999
Q ss_pred HHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 144 EALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 144 ~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
++|++++||+++||+||..++||+|||.++...|++++.+.+..++++.|+|++|+|+
T Consensus 181 ~~L~~glvDel~lT~ip~~~gGD~~FP~~d~~~~~lv~~~~~~~~~~~~~~f~~y~r~ 238 (238)
T 2bl9_A 181 ECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV 238 (238)
T ss_dssp HHHHTTCCSEEEEEEEEEEECCSEECCCCCGGGEEEEEECCCEEETTEEEEEEEEEEC
T ss_pred HHhcccCCCEEEEEEeccccCCceeCCCCCchhcEEEEEEecccCCCccEEEEEEEeC
Confidence 9999999999999999999999999999987789998877666789999999999985
No 30
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=100.00 E-value=5.6e-38 Score=293.70 Aligned_cols=160 Identities=39% Similarity=0.660 Sum_probs=139.2
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~ 102 (513)
++++++|+|+||+||.+|+|||++|+|+++|++.|+ +++|||||||||+++.+.|||++|+|||+||+...
T Consensus 5 ~i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iV~S~~~~~-- 75 (167)
T 2w3w_A 5 EVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTM-------GHTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDF-- 75 (167)
T ss_dssp CCEEEEEEETTSEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcCcCCCCcCccchHHHHHHHHHhc-------CCeEEEcchHhhhcCccccCCCCCeEEEEeCCCCC--
Confidence 499999999999999999999999999999999997 78999999999999854589999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc---cCCccCCCCCCCCcee
Q 010303 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQP 179 (513)
Q Consensus 103 ~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~---~GD~fFP~~~~~~f~l 179 (513)
..+++.+++|+++++ .+++ ++++|||+||+++|++|| ++||+++||++|..+ +||+|||.++.. |++
T Consensus 76 -~~~~~~~~~~~~~~l-~l~~-----~~~~i~ViGG~~l~~~~l--~lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~~l 145 (167)
T 2w3w_A 76 -VAEGARVAGSLEAAL-AYAG-----SDPAPWVIGGAQIYLLAL--PHATRCEVTEIEIDLRRDDDDALAPALDDS-WVG 145 (167)
T ss_dssp -CCTTSEEESSHHHHH-HHTT-----TCSSCEEEECHHHHHHHG--GGCSEEEEEEEECCCCCCTTSEECCCCCTT-CEE
T ss_pred -CCCCEEEECCHHHHH-Hhhc-----CCCeEEEEchHHHHHHHH--HHCCEEEEEEEEeecCCCCccEeCCCCCcc-cEE
Confidence 445788888999999 5553 268999999999999999 499999999999999 899999999877 998
Q ss_pred eeeecCcccCCccEEEEEEEEc
Q 010303 180 WYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 180 ~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
........++++.|+|++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~f~~y~r~ 167 (167)
T 2w3w_A 146 ETGEWLASRSGLRYRFHSYRRD 167 (167)
T ss_dssp EECCCEECTTSCEEEEEEEEC-
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 3322234566799999999984
No 31
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=100.00 E-value=2e-37 Score=288.83 Aligned_cols=158 Identities=35% Similarity=0.597 Sum_probs=142.2
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010303 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (513)
Q Consensus 24 i~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~ 103 (513)
+++++|+|+||+||.+|+|||++|+|+++|+++|+ +++|||||||||++| |||++|++||+||+...
T Consensus 2 i~~~~A~s~dG~Ig~~g~l~W~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~--- 68 (164)
T 1zdr_A 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTM-------GHAIVMGRKTFEAIG---RPLPGRDNVVVTGNRSF--- 68 (164)
T ss_dssp EEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC---
T ss_pred EEEEEEEcCCCeEeCCCCcccCCHHHHHHHHHHhc-------CCEEEECCcHHhcCC---CCCCCCeEEEEcCCCCc---
Confidence 89999999999999999999999999999999987 899999999999997 89999999999999754
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeeee
Q 010303 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (513)
Q Consensus 104 ~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (513)
..+++.+++|++++++.+++. +++|||+||+++|++|| ++|||++||++|..++||+|||.++...|++++..
T Consensus 69 ~~~~~~~~~~~~~~l~~l~~~-----~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~~~ 141 (164)
T 1zdr_A 69 RPEGCLVLHSLEEVKQWIASR-----ADEVFIIGGAELFRATM--PIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYT 141 (164)
T ss_dssp CCTTCEEECSHHHHHHHHHTC-----CSCEEEEECHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCTTTEEEEEEE
T ss_pred CCCCeEEECCHHHHHHHHhcC-----CCeEEEECcHHHHHHHH--HhCCEEEEEEeccccCCcEECCCCChhHcEEEEEE
Confidence 345777888999999999863 47999999999999999 59999999999999999999999987789998764
Q ss_pred cC--cccCCccEEEEEEEEc
Q 010303 184 FP--IVENNIRYCLSTYVRV 201 (513)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (513)
.. .++++++|+|++|+|+
T Consensus 142 ~~~~~~~~~~~~~~~~Y~r~ 161 (164)
T 1zdr_A 142 PGGKDEKNPYEHAFIIYERK 161 (164)
T ss_dssp ECCCSSSSCSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEc
Confidence 32 3457789999999996
No 32
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=100.00 E-value=1.3e-38 Score=319.16 Aligned_cols=180 Identities=29% Similarity=0.504 Sum_probs=152.5
Q ss_pred CceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccCC----------------------------CCCCcEEEE
Q 010303 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSD----------------------------AGKRNAVIM 71 (513)
Q Consensus 21 mrki~livAvs~dG~IG~~g~LpW-~~peD~~~F~~~T~~~~~----------------------------~~~~~~vIM 71 (513)
-+++.+|+|++.||+||.+|.||| ++|+||+||+++|+++++ ++.+++|||
T Consensus 25 ~~~~~~i~a~~~n~~IG~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f~~~ig~~VIM 104 (280)
T 1j3k_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (280)
T ss_dssp SCGGGCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCCEEEE
T ss_pred cccEEEEEEecCCceeccCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhhccccCCEEEE
Confidence 345778899999999999999999 999999999999974221 123699999
Q ss_pred ccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCc
Q 010303 72 GRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPEC 151 (513)
Q Consensus 72 GRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lv 151 (513)
||||||++|.++||||+|++|||||+.... ...+++.+++|++++++.|++. ++++|||+||++||++||++++|
T Consensus 105 GRkTyEsip~~~~PLp~R~nIVlSr~~~~~-~~~~~v~vv~sl~eal~~lk~~----~~~~I~ViGGa~ly~~~L~~glv 179 (280)
T 1j3k_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLI 179 (280)
T ss_dssp EHHHHHHSCGGGCSCTTSEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCC
T ss_pred cchHhhhhcccccCcCCCeEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHhcCccC
Confidence 999999998556899999999999987431 1246788888999999999875 36799999999999999999999
Q ss_pred CEEEEEEECccccCCccCCCCCCCCceeeeeecCcccCCccEEEEEEEEcccch
Q 010303 152 DAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAA 205 (513)
Q Consensus 152 Del~LT~I~~~~~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~ 205 (513)
|+++||+||..++||+|||.++...|++++.+....++++.|+|++|+|+++.+
T Consensus 180 Del~LT~Ip~~lgGD~~FP~~d~~~~~lv~~~~~~~~~g~~~~f~~Y~R~~~~~ 233 (280)
T 1j3k_A 180 KKIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKM 233 (280)
T ss_dssp SEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC--
T ss_pred CEEEEEEeccccCCceeCCCCChhhcEEEEEEeeccCCCceEEEEEEEECCccc
Confidence 999999999999999999999878899987655455688899999999985443
No 33
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=100.00 E-value=2.5e-37 Score=286.87 Aligned_cols=155 Identities=36% Similarity=0.549 Sum_probs=138.6
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~ 102 (513)
++++++|+|+||+||.+|+|||++|+|+++|+++|+ +++|||||||||+++ ||||+|+|||+||+...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~---~pl~~r~~iV~S~~~~~-- 69 (159)
T 2w9h_A 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG---KPLPNRRNVVLTSDTSF-- 69 (159)
T ss_dssp CEEEEEEECTTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCeEcCCCccCccchHHHHHHHHHhc-------CCEEEECCChhhccc---ccCCCCEEEEEcCCCCc--
Confidence 499999999999999999999999999999999997 899999999999996 79999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeeee
Q 010303 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (513)
Q Consensus 103 ~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (513)
..+++.+++|++++++. +++|||+||+++|++|| ++|||++||++|..++||+|||.++...|++++.
T Consensus 70 -~~~~~~~~~~~~~~l~~---------~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~Gd~~Fp~~~~~~~~l~~~ 137 (159)
T 2w9h_A 70 -NVEGVDVIHSIEDIYQL---------PGHVFIFGGQTLFEEMI--DKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASS 137 (159)
T ss_dssp -CCTTCEEECSGGGGGGS---------CSCEEEEECHHHHHHHT--TTCSEEEEEEECSCCCCSEECCCCCTTTEEEEEE
T ss_pred -CCCCeEEECCHHHHHhc---------CCcEEEEChHHHHHHHH--HhCCEEEEEEecccccCCeeCCCCChhHcEEEEE
Confidence 34578888899999875 26899999999999999 6999999999999999999999998778999876
Q ss_pred ecC--cccCCccEEEEEEEEc
Q 010303 183 SFP--IVENNIRYCLSTYVRV 201 (513)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (513)
+.. .++++++|+|++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~Y~r~ 158 (159)
T 2w9h_A 138 VEGKLDEKNTIPHTFLHLIRK 158 (159)
T ss_dssp EECCCBTTBCSCEEEEEEEEC
T ss_pred EeccccccCCccEEEEEEEEC
Confidence 532 3457789999999986
No 34
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=100.00 E-value=6e-37 Score=284.86 Aligned_cols=156 Identities=28% Similarity=0.498 Sum_probs=139.1
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCC
Q 010303 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFD 101 (513)
Q Consensus 23 ki~livAvs~dG~IG~~g~LpW-~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~ 101 (513)
++++++|+|+||+||.+|+||| ++|+|+++|+++|+ +++|||||||||++| |||++|+|||+||+...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~l~W~~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~- 70 (162)
T 1vdr_A 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIA-------DDPVVLGRTTFESMR---DDLPGSAQIVMSRSERS- 70 (162)
T ss_dssp CEEEEEEEEETSEEEBTTBCSSCCCHHHHHHHHHHTS-------SSCEEEEHHHHHHTT---TSCCSSSEEEECSSCCC-
T ss_pred EEEEEEEEcCCCcEECCCCccccCChHHHHHHHHhhC-------CCEEEEcchHHhhCC---ccCCcCeEEEEcCCCcc-
Confidence 5999999999999999999999 99999999999997 899999999999997 79999999999999751
Q ss_pred CCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCCccCCCCCCCCceeee
Q 010303 102 IATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWY 181 (513)
Q Consensus 102 ~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~GD~fFP~~~~~~f~l~~ 181 (513)
...+++.+++|++++++.+++. ++++|||+||+++|++|| ++|||++||++|..++||+|||.++...|++++
T Consensus 71 -~~~~~~~~~~~~~~~l~~l~~~----~~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~ 143 (162)
T 1vdr_A 71 -FSVDTAHRAASVEEAVDIAASL----DAETAYVIGGAAIYALFQ--PHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDA 143 (162)
T ss_dssp -CCSSSCCEESSHHHHHHHHHHT----TCSCEEEEECHHHHHHHG--GGCSEEEEEEEEEECCCSEECCCCCTTTEEEEE
T ss_pred -cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHH--HhCCEEEEEEEccccccCEECCCCCchHCEEEE
Confidence 1345677778999999999875 368999999999999999 599999999999999999999998877899986
Q ss_pred eecCcccCCccEEEEEEEEc
Q 010303 182 SSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 182 ~~~~~~e~~~~~~f~~Y~r~ 201 (513)
.... .+|+|++|+|+
T Consensus 144 ~~~~-----~~~~~~~Y~~~ 158 (162)
T 1vdr_A 144 ETDH-----EGFTLQEWVRS 158 (162)
T ss_dssp EEEC-----SSCEEEEEEEC
T ss_pred EecC-----CCEEEEEEEEC
Confidence 5431 16899999986
No 35
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=100.00 E-value=5e-37 Score=285.11 Aligned_cols=154 Identities=36% Similarity=0.691 Sum_probs=136.3
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010303 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (513)
Q Consensus 24 i~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~~~~ 103 (513)
+++++|+|+||+||.+|+|||++|+|+++|++.|+ +++|||||||||++|.+.|||++|+|||+||+...
T Consensus 2 i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~--- 71 (159)
T 1df7_A 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITM-------GHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADF--- 71 (159)
T ss_dssp EEEEEEEETTSEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSSTTC---
T ss_pred EEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHHC-------CCEEEEeChHHhhcccccCCCCcCEEEEEeCCCCc---
Confidence 89999999999999999999999999999999997 68999999999999855589999999999999753
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc---cCCccCCCCCCCCceee
Q 010303 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQPW 180 (513)
Q Consensus 104 ~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~---~GD~fFP~~~~~~f~l~ 180 (513)
..+++.+++|++++++ . ++|||+||+++|++|| ++|||++||++|..+ +||+|||.++.. | ++
T Consensus 72 ~~~~~~~~~~~~~~l~----~------~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~-~~ 137 (159)
T 1df7_A 72 MASGAEVVGSLEEALT----S------PETWVIGGGQVYALAL--PYATRCEVTEVDIGLPREAGDALAPVLDET-W-RG 137 (159)
T ss_dssp CCTTSEEESSHHHHTT----S------SSEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCCTTCEECCCCCTT-C-EE
T ss_pred CCCCEEEECCHHHHhc----C------CcEEEECcHHHHHHHH--HHCCEEEEEEEeeecCCCCccEeCCCCCcc-c-EE
Confidence 3457888889999987 1 5899999999999999 499999999999999 899999999877 9 77
Q ss_pred eeec-CcccCCccEEEEEEEEc
Q 010303 181 YSSF-PIVENNIRYCLSTYVRV 201 (513)
Q Consensus 181 ~~~~-~~~e~~~~~~f~~Y~r~ 201 (513)
+... ...++++.|+|++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 1df7_A 138 ETGEWRFSRSGLRYRLYSYHRS 159 (159)
T ss_dssp EECCCEECTTSCEEEEEEEECC
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 6543 34566799999999984
No 36
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=100.00 E-value=8.7e-37 Score=291.64 Aligned_cols=172 Identities=40% Similarity=0.652 Sum_probs=144.3
Q ss_pred ceEEEEEEEeCCCee-ecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010303 22 RSYQVVVAATRDMGI-GKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (513)
Q Consensus 22 rki~livAvs~dG~I-G~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~ 100 (513)
+++++++|+|+||+| |.+|+|||++++|++||+++|++..++++.++|||||||||++|.+.|||++|+|||+||+...
T Consensus 4 ~~i~~i~A~sldg~iig~~g~lpW~~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~ 83 (192)
T 1aoe_A 4 PNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYEN 83 (192)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTCCC
T ss_pred CEEEEEEEEcCCCCeECCCCCCCCCChhHHHHHHHHhcCCCcccCCCEEEECchHhhcccccccCCCCCeEEEEcCCCcc
Confidence 679999999966655 8899999999999999999998544455679999999999999754469999999999998642
Q ss_pred CCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcc----ccCCccCCCCCCCC
Q 010303 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IECDTFIPSIDSSV 176 (513)
Q Consensus 101 ~~~~~~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~----~~GD~fFP~~~~~~ 176 (513)
. ...+++++++|++++++. ++ ++++|||+||+++|++||++++||+++||+||.. ++||+|||. +...
T Consensus 84 ~-~~~~~~~v~~~~~~al~~-~~-----~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~lG~G~~gd~~fp~-~~~~ 155 (192)
T 1aoe_A 84 E-IIDDNIIHASSIESSLNL-VS-----DVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKF-PLES 155 (192)
T ss_dssp E-EEETTEEEESSHHHHHHT-CC-----SEEEEEECCCHHHHHHHTTSTTEEEEEEEEEECSCGGGSCCCEECCC-CGGG
T ss_pred c-cCCCCEEEECCHHHHHHh-hc-----CCCeEEEEcCHHHHHHHhcCCCCCEEEEEEEEcccCCCCccceECCC-ChHH
Confidence 1 123578899999999987 53 2579999999999999999999999999999999 789999994 3467
Q ss_pred ceeeeee------------cCcccCCccEEEEEEEEc
Q 010303 177 FQPWYSS------------FPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 177 f~l~~~~------------~~~~e~~~~~~f~~Y~r~ 201 (513)
|++++.+ ..++++++.|+|++|+|+
T Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~y~r~ 192 (192)
T 1aoe_A 156 WTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192 (192)
T ss_dssp EEECCHHHHHHHHTTCCCCSSEEETTEEEEEEEEEEC
T ss_pred cEEEeeeccccccccccccccccCCCeeEEEEEEEEC
Confidence 9887543 234578899999999984
No 37
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=100.00 E-value=8.4e-37 Score=298.93 Aligned_cols=177 Identities=36% Similarity=0.575 Sum_probs=145.8
Q ss_pred ceEEEEEEEeCCCee-ecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010303 22 RSYQVVVAATRDMGI-GKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (513)
Q Consensus 22 rki~livAvs~dG~I-G~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~~ 100 (513)
+++++|+|+|+||+| |.+|+|||++++|+++|+++|++.++|++.++|||||||||++|.+.+||++|+|||+||+...
T Consensus 4 ~~i~livA~Sldg~iiG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~wrPlp~r~~iVlSr~~~~ 83 (227)
T 3cse_A 4 VPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDG 83 (227)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTSSS
T ss_pred cEEEEEEEEcCCCCEECCCCCcCCCChHHHHHHHHHHccCCcccccCEEEECchhhhcccccccCCCcCeEEEEeCCCcc
Confidence 569999999966655 7899999999999999999998666667789999999999999854359999999999998743
Q ss_pred CCC-CCCCEEEECCHHHHHHHHHcCC-CCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcc----cc-CCccCC-CC
Q 010303 101 DIA-TVENVVICGSIGSALELLAASP-YCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IE-CDTFIP-SI 172 (513)
Q Consensus 101 ~~~-~~~~v~v~~sleeai~~l~~~~-~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~----~~-GD~fFP-~~ 172 (513)
... ..+++++++|+++|++.|++.. ...+.++|||+||++||++|| ++||+++||+||.. ++ ||+||| .+
T Consensus 84 ~~~~~~~~~~v~~sl~~al~~lk~~~~~~~~~~~I~ViGG~~ly~~~L--~lvDel~lT~ip~~lG~G~~~gD~~Fp~~~ 161 (227)
T 3cse_A 84 ELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQKQE 161 (227)
T ss_dssp SCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECCCHHHHHHHT--TTCSEEEEEEEEECTTSCCCCCSEECCHHH
T ss_pred ccccCCCCEEEeCCHHHHHHHHHhhhcccCCCCeEEEEcCHHHHHHHH--HhCCEEEEEEEEccccCCCccccccCCCCC
Confidence 110 1356889999999999997630 001357999999999999999 99999999999998 66 999999 67
Q ss_pred CCCCceeeeee--------------c--------------CcccCCccEEEEEEEEc
Q 010303 173 DSSVFQPWYSS--------------F--------------PIVENNIRYCLSTYVRV 201 (513)
Q Consensus 173 ~~~~f~l~~~~--------------~--------------~~~e~~~~~~f~~Y~r~ 201 (513)
+...|++ +.+ . .++|+|+.|.|++|+|+
T Consensus 162 ~~~~w~l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~y~f~~~~r~ 217 (227)
T 3cse_A 162 LEQRFYD-NSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKK 217 (227)
T ss_dssp HHHHEEE-CGGGHHHHSCTTCCCSSCCEEEEETTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ChhhcEe-chhhhhhhcCccccCCccccccccccccccccceeECCEEEEEEEEEEe
Confidence 6566877 221 1 45689999999999997
No 38
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=99.97 E-value=2e-31 Score=254.94 Aligned_cols=131 Identities=28% Similarity=0.455 Sum_probs=110.9
Q ss_pred EEEEEEEeC--------CCeeecCCCCCC-CChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEE
Q 010303 24 YQVVVAATR--------DMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVL 94 (513)
Q Consensus 24 i~livAvs~--------dG~IG~~g~LpW-~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVl 94 (513)
|++|+|+|+ ||+||.+|+||| ++|+|++||+++|+ +++|||||||||++| .|||+|+|||+
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG~~g~lpW~~l~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~R~~iVl 71 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTE-------GTIMIMGAKTFQSLP---TLLPGRSHIVV 71 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEBTTBCTTCCCHHHHHHHHHHHT-------TSEEEEEHHHHHTCS---SCCTTSCEEEE
T ss_pred EEEEEEEcCccccCCCcCCeECCCCCCCCcCChHHHHHHHHHhc-------CCEEEEchhHhhhcc---cccCCCcEEEE
Confidence 899999999 999999999999 89999999999997 799999999999998 48999999999
Q ss_pred cCCCCCCC--CCC-----------------CCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEE
Q 010303 95 TRSGSFDI--ATV-----------------ENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIH 155 (513)
Q Consensus 95 Srt~~~~~--~~~-----------------~~v~v~~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~ 155 (513)
||++.... ... ++.++++|++++++.+++. +++|||+||+++|++|| ++||+++
T Consensus 72 Sr~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~sl~eal~~lk~~-----~~~I~ViGG~~ly~~~L--~lvDel~ 144 (193)
T 1juv_A 72 CDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQ-----NSKVSVIGGPALLYAAL--PYADEVV 144 (193)
T ss_dssp CCTTSCCCCCTTCCCCSEEECHHHHHHHHTTCCEEEECTTSSCEEEECT-----TSCEEEEECHHHHHHHG--GGCSEEE
T ss_pred cCCCcccccccccccceeecccccccccccccceecCCHHHHHHHHHcC-----CCcEEEECcHHHHHHHH--HhCCEEE
Confidence 99852210 011 1124667777777766542 58999999999999999 8999999
Q ss_pred EEEEC--ccccCCccCCC
Q 010303 156 ITEIE--TRIECDTFIPS 171 (513)
Q Consensus 156 LT~I~--~~~~GD~fFP~ 171 (513)
||+|| ..++||+|||.
T Consensus 145 lT~ip~~~~~~gd~~F~~ 162 (193)
T 1juv_A 145 VSRIVKRHRVNSTVQLDA 162 (193)
T ss_dssp EEEEEESSCCCCSEEECH
T ss_pred EEEeccccccCCCeecCh
Confidence 99998 45699999993
No 39
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.96 E-value=7.9e-29 Score=231.05 Aligned_cols=162 Identities=27% Similarity=0.333 Sum_probs=136.3
Q ss_pred ceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC-C
Q 010303 22 RSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS-F 100 (513)
Q Consensus 22 rki~livAvs~dG~IG~~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~~iVlSrt~~-~ 100 (513)
||+++++|+|+||+||.+++ ||+.++|+++|++++.. .++|||||+||++++ ||+++++++|+||+.. .
T Consensus 1 ~kv~l~~A~slDG~Ia~~~~-~W~~~~~~~~~~~~~~~------~dailmGr~T~~~l~---~p~~~~~~~V~s~~~~~~ 70 (168)
T 1cz3_A 1 AKVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTE------IGNVVMGRITFEEIG---RPLPERLNVVLTRRPKTS 70 (168)
T ss_dssp CEEEEEEEECTTCEEECSCT-TCSCHHHHHHHHHHHHH------HTEEEEEHHHHHHHC---SCCTTSEEEEECSSCCCC
T ss_pred CeEEEEEEEcCCCeEECCCC-CCCChHHHHHHHHHHHh------CCEEEEChHHhhcCC---CCCCCCeEEEECCCCCcc
Confidence 57999999999999998666 99999999999999953 799999999999985 7999999999999864 2
Q ss_pred CCCCCCCEEEEC-CHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCCccCCCCCC-CCc
Q 010303 101 DIATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDS-SVF 177 (513)
Q Consensus 101 ~~~~~~~v~v~~-sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~-~GD~fFP~~~~-~~f 177 (513)
..+++.++. |++++++.|++. +.++|||+||+++|++||++++|||+++|++|..+ +|+++||.++. ..|
T Consensus 71 ---~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~lG~g~~~f~~~~~~~~l 143 (168)
T 1cz3_A 71 ---NNPSLVFFNGSPADVVKFLEGK----GYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPL 143 (168)
T ss_dssp ---SCTTEEEECSCHHHHHHHHHHT----TCSEEEEEECHHHHHHHHHTTCCSEEEEEECSEEESSCEESSCCCSCEEEE
T ss_pred ---CCCCEEEEeCCHHHHHHHHHhC----CCCEEEEECCHHHHHHHHhCCCCCEEEEEEeceecCCCCcCCCCCCccccc
Confidence 234777776 999999999876 36899999999999999999999999999999988 68999998764 368
Q ss_pred eeeeeecCcccCCccEEEEEEEEccc
Q 010303 178 QPWYSSFPIVENNIRYCLSTYVRVRS 203 (513)
Q Consensus 178 ~l~~~~~~~~e~~~~~~f~~Y~r~~~ 203 (513)
++++... ..+ +++.+..|++.++
T Consensus 144 ~l~~~~~--~~~-~~~~~l~Y~~~~~ 166 (168)
T 1cz3_A 144 KLLEMRR--LNE-RGTLFLKYSVEKS 166 (168)
T ss_dssp EEEEEEE--CSS-SCCEEEEEEEC--
T ss_pred EEeeeEE--eCC-CCEEEEEEEEccc
Confidence 8875532 222 2469999998643
No 40
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.96 E-value=8e-29 Score=233.47 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=137.7
Q ss_pred CceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHHHhhccCCCCCCcEEEEccccccccC----CCCCCCCCCc
Q 010303 21 KRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHRPLPGRL 90 (513)
Q Consensus 21 mrki~livAvs~dG~IG-~~g~LpW~~pe-----D~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp----~~~~pl~~R~ 90 (513)
|||+++++|+|+||+|| .+|+++|+.++ +.++|.+.+.. .++|||||+||++++ ...||+++++
T Consensus 3 M~kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~~~~~p~~~~~~~p~~~~~ 76 (178)
T 3jtw_A 3 ARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSK------IDTVIMGRTTYEQVTQKLSPEKYVYADRQ 76 (178)
T ss_dssp CCCEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHH------EEEEEEEHHHHHHHHHHTCSSSCTTTTSE
T ss_pred ceEEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhc------CCEEEEChHHHhhhhhccCCCCCCCCCCC
Confidence 99999999999999999 59999998765 57899988853 789999999999985 1347999999
Q ss_pred EEEEcCCCCCCCCCCCCEEEEC-CHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCCcc
Q 010303 91 NVVLTRSGSFDIATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTF 168 (513)
Q Consensus 91 ~iVlSrt~~~~~~~~~~v~v~~-sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~-~GD~f 168 (513)
+||+||+... ..+++.++. |++++++.|++. +.++|||+||+++|++||++++|||+++|++|..+ +|+++
T Consensus 77 ~iV~s~~~~~---~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~~G~g~~~ 149 (178)
T 3jtw_A 77 TYIVTSHLGE---DTDKIKYWKQSPVELVKRIQKE----KGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRL 149 (178)
T ss_dssp EEEECSSCCC---CCSSEEEECSCHHHHHHHHHTS----SCCEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCCSSEES
T ss_pred EEEEeCCCCC---CCCCEEEEcCCHHHHHHHHHhC----CCCEEEEEChHHHHHHHHHCCCceEEEEEEecEEEcCCCcc
Confidence 9999998754 345776665 999999999876 47899999999999999999999999999999999 89999
Q ss_pred CCCCCC-CCceeeeeecCcccCCccEEEEEEEE
Q 010303 169 IPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVR 200 (513)
Q Consensus 169 FP~~~~-~~f~l~~~~~~~~e~~~~~~f~~Y~r 200 (513)
||.++. ..|++++... . + +..+.+|+|
T Consensus 150 f~~~~~~~~l~l~~~~~--~-~--~~v~l~Y~r 177 (178)
T 3jtw_A 150 FDRLEEQVPVRLIDVYQ--K-N--ELVYSIYQR 177 (178)
T ss_dssp SSCCCSCCCEEEEEEEE--E-T--TEEEEEEEE
T ss_pred cCCCCcCcceEEeEEEE--E-C--CEEEEEEEe
Confidence 998764 5788876543 1 2 467888876
No 41
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94 E-value=1.9e-26 Score=221.00 Aligned_cols=164 Identities=21% Similarity=0.254 Sum_probs=131.2
Q ss_pred CceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHHH-hhccCCCCCCcEEEEccccccccCCC--CCCCCCCcE
Q 010303 21 KRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKEI-TQITSDAGKRNAVIMGRKTWESIPLE--HRPLPGRLN 91 (513)
Q Consensus 21 mrki~livAvs~dG~IG-~~g~LpW~~pe-----D~~~F~~~-T~~~~~~~~~~~vIMGRkTyeslp~~--~~pl~~R~~ 91 (513)
|+++++++|+|+||+|| .+|+++|+.++ |...|.+. +. .++|||||+||++++.. .||+ ++++
T Consensus 19 ~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~-------~~ailmGr~T~e~~~~~~~~~P~-~~~~ 90 (197)
T 3ky8_A 19 GMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMER-------VDGLVMGRNTLDMVLSFDCDWPY-SKPV 90 (197)
T ss_dssp TCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHH-------CSEEEEEHHHHHHHCCTTCCCCC-SSCE
T ss_pred CCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHh-------CCEEEEcHHHhHhHhhcCCCCCC-CCcE
Confidence 79999999999999998 69999998764 34445554 44 89999999999998742 3787 5699
Q ss_pred EEEcCCCCCCCCC-CCCEEEE-CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCCcc
Q 010303 92 VVLTRSGSFDIAT-VENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTF 168 (513)
Q Consensus 92 iVlSrt~~~~~~~-~~~v~v~-~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~-~GD~f 168 (513)
||+||+....... .+++.++ .|++++++.|++. +.++|||+||+++ ++||++++|||+++|++|..+ +|+++
T Consensus 91 iVls~~~~~~~~~~~~~~~~v~~~l~~~l~~L~~~----~~~~i~v~GG~~l-~~~l~~glvDel~l~~~P~~lG~G~~~ 165 (197)
T 3ky8_A 91 FVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAK----GFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGVPL 165 (197)
T ss_dssp EEECSSCCSCCTTCTTTEEEECSCHHHHHHHHHHT----TCCEEEEESHHHH-HHHHHTTCCCEEEEEEESEECSSSEES
T ss_pred EEEeCCCCCCccccCCCEEEEeCCHHHHHHHHHhC----CCCeEEEEehHHH-HHHHhCCCCCEEEEEEeeEEECCCCcc
Confidence 9999997431111 1367654 7999999999876 4689999999999 999999999999999999998 79999
Q ss_pred CCCCCC-CCceeeeeecCcccCCccEEEEEEEEc
Q 010303 169 IPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 169 FP~~~~-~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
||.++. ..|++++... ..+ ++.++.|.++
T Consensus 166 f~~~~~~~~l~l~~~~~--~~~--g~v~l~Y~~~ 195 (197)
T 3ky8_A 166 FGELESSLSFNVIKSEV--VLD--SLTQTTYHRK 195 (197)
T ss_dssp CCCCSSCEEEEEEEEEE--ETT--TEEEEEEEEC
T ss_pred cCCCCcCcceEEEEEEE--eCC--CEEEEEEEEc
Confidence 998763 4788876532 233 4689999886
No 42
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.93 E-value=3.8e-26 Score=214.51 Aligned_cols=163 Identities=16% Similarity=0.168 Sum_probs=131.3
Q ss_pred CCceEEEEEEEeCCCeee-cCCCCCCCChh---h--HHHHHHHhhccCCCCCCcEEEEccccccccCC-CCCCCCCCcEE
Q 010303 20 PKRSYQVVVAATRDMGIG-KDGKLPWKLPS---D--LKFFKEITQITSDAGKRNAVIMGRKTWESIPL-EHRPLPGRLNV 92 (513)
Q Consensus 20 ~mrki~livAvs~dG~IG-~~g~LpW~~pe---D--~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~-~~~pl~~R~~i 92 (513)
.|+++++++|+|+||+|| .+|++||+.++ + +++|.+++.. .++|||||+||++++. ..||+ ++++|
T Consensus 2 ~mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~dailmGr~T~~~~~~~~~~P~-~~~~i 74 (178)
T 2xw7_A 2 HMVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIET------IGVLVMGASTYEWVVEHGDWSY-DQPAW 74 (178)
T ss_dssp CSCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHT------EEEEEEEHHHHHHHHHSSCCCC-SSCEE
T ss_pred CCcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHh------CCEEEECHHHHhhhhcCCCCCC-CCCEE
Confidence 378999999999999996 69999998652 3 6789988752 7999999999999852 12555 88999
Q ss_pred EEcCCC-CCCCCCCCCEEEE-CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCCccC
Q 010303 93 VLTRSG-SFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFI 169 (513)
Q Consensus 93 VlSrt~-~~~~~~~~~v~v~-~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~-~GD~fF 169 (513)
|+||+. +. ...+++.++ .|++++++.|++.+ +.++|||+||+++|++||++++|||+++|++|..+ +|+++|
T Consensus 75 V~s~~~~~~--~~~~~~~~~~~dl~~~l~~L~~~~---~~~~v~v~GG~~l~~~~l~~gLvDel~l~~~P~~lG~g~~~f 149 (178)
T 2xw7_A 75 VLTHRPEIA--AESHPMQVFSGDVAELHPELVAAA---GGKDVWVVGGGDVAAQFVAADLIDEIIVSYAPCTLGVGSRVL 149 (178)
T ss_dssp EECSCGGGC--BTTBCCEEECSCHHHHHHHHHHHT---TTSEEEEEECHHHHHHHHHTTCCCEEEEEEESEECSSSSBSS
T ss_pred EEeCCCCCc--CCCCCEEEECCCHHHHHHHHHhcc---CCCcEEEEccHHHHHHHHHCCCCeEEEEEEeceEecCCCcCC
Confidence 999983 21 123466555 79999999998752 23899999999999999999999999999999998 799999
Q ss_pred CCCCCCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 170 PSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 170 P~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
|..+ .|++++... . + ++.+..|.++
T Consensus 150 ~~~~--~l~l~~~~~--~-~--~~v~l~y~~~ 174 (178)
T 2xw7_A 150 PMRS--EWVLDDCAR--N-G--DFVCARWKRP 174 (178)
T ss_dssp CSCE--ECEEEEEEE--E-T--TEEEEEEECC
T ss_pred CCCC--ceEEEeEEE--e-C--CeEEEEEEEc
Confidence 9876 688875543 2 2 4688899875
No 43
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=5.1e-25 Score=208.62 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=131.3
Q ss_pred CCCCCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCC----------
Q 010303 17 QPNPKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP---------- 85 (513)
Q Consensus 17 ~~~~mrki~livAvs~dG~IG~-~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~p---------- 85 (513)
....|+++++++|+|+||+||. +|+++|++++|..+|.+++.. .++|||||+||++++. .||
T Consensus 4 ~~~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~------~dail~Gr~T~~~~~~-~~p~~~Pd~~~~~ 76 (189)
T 2gd9_A 4 NNLKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQ------IDTILYGRKSFDLWGQ-YIPKNEDPDTEKE 76 (189)
T ss_dssp CCCCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHT------EEEEEEEHHHHHHHTT-C----------CC
T ss_pred CCCCCceEEEEEEEccccceECCCCCcCcccCChHHHHHHHHhc------CCEEEEChHHHhhhhh-cCCCCCCccccch
Confidence 4456889999999999999986 999999977665578887642 7999999999999963 244
Q ss_pred CC----CCcEEEEcCCCCCCCCCCCCEEEE-CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEEC
Q 010303 86 LP----GRLNVVLTRSGSFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIE 160 (513)
Q Consensus 86 l~----~R~~iVlSrt~~~~~~~~~~v~v~-~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~ 160 (513)
+. ++++||+|++... ... ++.++ .|++++++.|++. +.++|||+||+++|++||++++|||++++++|
T Consensus 77 ~~~~~~~~~~iV~t~~~~~--~~~-~~~~~~~~l~~~l~~L~~~----~~~~i~v~GG~~l~~~~l~~glvDel~l~~~P 149 (189)
T 2gd9_A 77 LWKLVHSKKKYVFSRTQNE--IDN-QAIFINDNILEEVNKLKKN----PGKDIWLYGGASLITTFINLGLVDEFRLSIHP 149 (189)
T ss_dssp HHHHHHHSEEEEECCEEET--TTT-EEECCHHHHHHHHHHHHHS----CCSEEEEEECHHHHHHHHHTTCCCEEEEEECS
T ss_pred hHHHhCCCCEEEEeCCCCC--CCC-CeEEEcCCHHHHHHHHHhC----CCCeEEEEChHHHHHHHHHCCCceEEEEEEeC
Confidence 22 7899999998532 122 56554 4999999999876 36899999999999999999999999999999
Q ss_pred ccc-cCCccCCCCC-CCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 161 TRI-ECDTFIPSID-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 161 ~~~-~GD~fFP~~~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
..+ +|+++||.++ ...|++++... ..+| +.+..|.++
T Consensus 150 ~~lG~g~~~f~~~~~~~~l~l~~~~~--~~~~--~~~l~y~~~ 188 (189)
T 2gd9_A 150 VVLGEGKPLFIDVKQRINLKMVNTRT--FSSG--VVQIVYHWN 188 (189)
T ss_dssp EECSSSEESSCSCCSCEECEEEEEEE--CTTS--CEEEEEEC-
T ss_pred EEeCCCCccCCCCCCCcceEEEEEEE--cCCC--EEEEEEEeC
Confidence 998 6999999864 34788875532 2343 477788763
No 44
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.88 E-value=1.1e-22 Score=199.09 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=119.0
Q ss_pred CceEEEEEEEeCCCeeec---CCCCC-------CCChh-hH-H------HHHHH-------------------hhccCCC
Q 010303 21 KRSYQVVVAATRDMGIGK---DGKLP-------WKLPS-DL-K------FFKEI-------------------TQITSDA 63 (513)
Q Consensus 21 mrki~livAvs~dG~IG~---~g~Lp-------W~~pe-D~-~------~F~~~-------------------T~~~~~~ 63 (513)
|+|+++.+++|+||+|+. ++.+- |..+. ++ . +|.+. ..
T Consensus 20 m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~----- 94 (231)
T 3kgy_A 20 MSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFE----- 94 (231)
T ss_dssp SCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHH-----
T ss_pred cceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHHh-----
Confidence 899999999999999964 22222 43222 21 1 22221 22
Q ss_pred CCCcEEEEccccccccCCC---CCCCCCCcEEEEcCCCCCCCCCCCCE---EEECCHHHHHHHHHcCCCCCCCCcEEEEe
Q 010303 64 GKRNAVIMGRKTWESIPLE---HRPLPGRLNVVLTRSGSFDIATVENV---VICGSIGSALELLAASPYCLSIEKVFVIG 137 (513)
Q Consensus 64 ~~~~~vIMGRkTyeslp~~---~~pl~~R~~iVlSrt~~~~~~~~~~v---~v~~sleeai~~l~~~~~~~~~~~I~ViG 137 (513)
..+++||||||||+++.. .+|+ +|++||+||++.......+++ ++.+|++++++.|++. .+.++|||+|
T Consensus 95 -~i~~vIMGRkTye~~~~~wp~~~p~-~r~~iVlS~~~~~~~~~~~~~~v~~v~~~l~eal~~l~~~---~~~~~I~V~G 169 (231)
T 3kgy_A 95 -RTGAHIMGKRMFEGGERGWPEEAPF-HTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREA---AGERDIRISG 169 (231)
T ss_dssp -TEEEEEEEHHHHHHHHHHSCSSCSC-CSEEEEECSSCCCCEEETTTEEEEEECSCHHHHHHHHHHH---HTTSEEEEEE
T ss_pred -cCCEEEEChhhhhhhhhhcCCcCcC-CCcEEEEcCCCCCccccCCCcEEEEEcCCHHHHHHHHHhh---cCCCcEEEeC
Confidence 268999999999998621 1234 899999999974311111233 3557999999999752 0368999999
Q ss_pred cHHHHHHHhcCCCcCEEEEEEECccc-cCCccCCCCCC--CCceeeeeecCcccCCccEEEEEEEE
Q 010303 138 GGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDS--SVFQPWYSSFPIVENNIRYCLSTYVR 200 (513)
Q Consensus 138 G~~Iy~~~L~~~lvDel~LT~I~~~~-~GD~fFP~~~~--~~f~l~~~~~~~~e~~~~~~f~~Y~r 200 (513)
|+++|++||++++|||++||++|..+ +|+++||.++. ..|++.+. ...+| ++++.|+|
T Consensus 170 G~~l~~~~L~~gLvDel~lti~Pv~lG~G~~lF~~~~~~~~~l~l~~~---~~~~G--vv~l~Y~r 230 (231)
T 3kgy_A 170 GANVIQQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRIDRV---LASPT--ATHLRYVR 230 (231)
T ss_dssp CHHHHHHHHHTTCCSEEEEEEESCCCSSSEESSCSCCSSCCCEEEEEE---EECSS--CEEEEEEE
T ss_pred CHHHHHHHHhCCCCCEEEEEEeceeccCCCccCCCCCCccceeEEEEE---EcCCC--EEEEEEEe
Confidence 99999999999999999999999998 79999999874 35776532 23454 48889987
No 45
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.68 E-value=2.4e-16 Score=164.66 Aligned_cols=168 Identities=16% Similarity=0.130 Sum_probs=123.0
Q ss_pred CCCceEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccccCC--------C-CCC--
Q 010303 19 NPKRSYQVVVAATRDMGIG-KDGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL--------E-HRP-- 85 (513)
Q Consensus 19 ~~mrki~livAvs~dG~IG-~~g~LpW~~-peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~--------~-~~p-- 85 (513)
..++++++.+|+|+||+|+ .+|+.+|.. +++.++|.++... .++|||||+||+.... + ..|
T Consensus 155 ~~rP~V~lk~A~SLDG~Ia~~~G~~~Wit~~~~~~~~~~lr~~------~daILvGr~T~~~d~P~Lt~R~~~g~~~P~r 228 (373)
T 2b3z_A 155 TGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKT------HQSILVGVGTVKADNPSLTCRLPNVTKQPVR 228 (373)
T ss_dssp HSSCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHH------SSEEEEEHHHHHHHCCCCCCCSTTCCSCCEE
T ss_pred ccchhheeeeeecCCCceeccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhhhhcCCcccccCcCCCCCCeE
Confidence 3578999999999999998 589999974 7778888887643 7999999999998521 0 011
Q ss_pred --------CC---------CCcEEEEcCCCCCCC----CCCCCEEEE------CCHHHHHHHHHcCCCCCCCCcEEEEec
Q 010303 86 --------LP---------GRLNVVLTRSGSFDI----ATVENVVIC------GSIGSALELLAASPYCLSIEKVFVIGG 138 (513)
Q Consensus 86 --------l~---------~R~~iVlSrt~~~~~----~~~~~v~v~------~sleeai~~l~~~~~~~~~~~I~ViGG 138 (513)
++ ++++||+|++..... -...++.+. .|+.++++.|++. +.++|||.||
T Consensus 229 vVld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG 304 (373)
T 2b3z_A 229 VILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEE----GIMSVYVEGG 304 (373)
T ss_dssp EEECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHT----TCCEEEEEEC
T ss_pred EEEcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHC----CCCEEEEEEh
Confidence 11 577888887752100 012355443 4899999999886 4789999999
Q ss_pred HHHHHHHhcCCCcCEEEEEEECcccc---CCccCCCC-----C-CCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 139 GQILSEALNAPECDAIHITEIETRIE---CDTFIPSI-----D-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 139 ~~Iy~~~L~~~lvDel~LT~I~~~~~---GD~fFP~~-----~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
++++.+||++++|||++++++|..+. |.++|+.. + ...|++++... .+++ ....|.++
T Consensus 305 ~~l~~s~L~agLVDEl~l~iaP~llG~~~g~~lf~~~~~~~~~~~~~l~l~~~~~--~g~d---v~l~y~~~ 371 (373)
T 2b3z_A 305 SAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQ--IGRD---IKLTAKPT 371 (373)
T ss_dssp HHHHHHHHHHTCCSEEEEEEESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEE--ETTE---EEEEEEEC
T ss_pred HHHHHHHHhCCCceEEEEEEcceEecCCCCcCcccccccccccccccceEeEEEE--ECCc---EEEEEEEC
Confidence 99999999999999999999999983 66788653 1 23566665432 2332 35667654
No 46
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=99.64 E-value=6.8e-15 Score=142.26 Aligned_cols=166 Identities=11% Similarity=0.104 Sum_probs=116.7
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccccC----C-----CCCCCC-
Q 010303 20 PKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----L-----EHRPLP- 87 (513)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~LpW~~-peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp----~-----~~~pl~- 87 (513)
.++++++.+|+|+||+|+. +|.. |.. +++.+++.++... .++|||||+||+..- . ..+|+.
T Consensus 2 ~rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~------~dailvG~~T~~~d~p~L~~~r~~~~~~P~~v 74 (219)
T 2azn_A 2 KKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRAN------VDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRI 74 (219)
T ss_dssp CCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHT------SSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEE
T ss_pred CCCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHH------CCEEEEChhehhhcCCcCccccccCCCCCEEE
Confidence 4678999999999999975 7878 974 5556677776542 789999999999651 1 123431
Q ss_pred -----------------CCcEEEEcCCCCCCCC----C---CCCEEEE------CCHHHHHHHHHcCCCCCCCCcEEEEe
Q 010303 88 -----------------GRLNVVLTRSGSFDIA----T---VENVVIC------GSIGSALELLAASPYCLSIEKVFVIG 137 (513)
Q Consensus 88 -----------------~R~~iVlSrt~~~~~~----~---~~~v~v~------~sleeai~~l~~~~~~~~~~~I~ViG 137 (513)
..+.+|+|++...... . ..++.+. .++.++++.|++. +.++|+|.|
T Consensus 75 V~d~~~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~ilveG 150 (219)
T 2azn_A 75 VVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDK----GIKSILLEG 150 (219)
T ss_dssp EECTTCCCCTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHT----TCCEEEEEE
T ss_pred EECCCCCCCccchhhcCCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHc----CCCEEEEee
Confidence 3456666665421000 0 1244333 4899999999886 478999999
Q ss_pred cHHHHHHHhcCCCcCEEEEEEECcccc---CCccCCCCC------CCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 138 GGQILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 138 G~~Iy~~~L~~~lvDel~LT~I~~~~~---GD~fFP~~~------~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
|+++..+||+++++||+++++.|..+. |-++|+... ...|++++... .+++ .+..|.++
T Consensus 151 G~~l~~s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~~--~~~~---v~l~y~~~ 218 (219)
T 2azn_A 151 GGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYR--LGEG---IVLEFKVK 218 (219)
T ss_dssp CHHHHHHHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEE--ETTE---EEEEEEEC
T ss_pred CHHHHHHHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEEE--ECCe---EEEEEEEC
Confidence 999999999999999999999999884 457886532 23677765432 2332 45778764
No 47
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.44 E-value=1.8e-12 Score=136.51 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=109.6
Q ss_pred CCCceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccccC----CCCC--------
Q 010303 19 NPKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHR-------- 84 (513)
Q Consensus 19 ~~mrki~livAvs~dG~IG~-~g~LpW~~-peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp----~~~~-------- 84 (513)
..|+++++.+|+|+||+|+. +|+..|.. +++.+++.++... .++|||||+||+..- ...|
T Consensus 171 ~~rP~V~~k~A~SLDG~IA~~~G~s~Wit~~~~r~~~~~lra~------~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~ 244 (402)
T 2g6v_A 171 TGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ------SHAILTSSATVLADDPALTVRWSELDEQTQA 244 (402)
T ss_dssp SSSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHH------CSEEEEEHHHHHHHCCCCCCCGGGCCGGGTS
T ss_pred cccchheeeeeecCCCCCccCCCCcCCcCCHHHHHHHHHHHHh------CCEEEECHHHHhhcCcccccccccccccccc
Confidence 45789999999999999975 88899974 4555666665543 789999999999641 1111
Q ss_pred ---------CC-----------------C-CCcEEEEcCCCCCCCCCCCCEEEE--C------CHHHHHHHHHcCCCCCC
Q 010303 85 ---------PL-----------------P-GRLNVVLTRSGSFDIATVENVVIC--G------SIGSALELLAASPYCLS 129 (513)
Q Consensus 85 ---------pl-----------------~-~R~~iVlSrt~~~~~~~~~~v~v~--~------sleeai~~l~~~~~~~~ 129 (513)
|+ . +.+.+|+|++.... .-..++.+. . |+.++++.|++. +
T Consensus 245 ~~~~~~~~~P~rvVld~~~~lp~~a~~~~~~~~~iV~t~~~~~~-~l~~gv~vi~~~~~~g~vdl~~~l~~L~~~----g 319 (402)
T 2g6v_A 245 LYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSR-EWPETVRTLLIPEHKGHLDLVVLMMQLGKQ----Q 319 (402)
T ss_dssp SCCGGGCCCCEEEEECTTCCCCTTSGGGSSSSCEEEEESSCCCS-CCCTTEEEEECCEETTEECHHHHHHHHHHT----T
T ss_pred cccccccCCCeEEEECCCCCCChhhHhhcCCCCEEEEECCcchh-hhcCCCEEEEecCCCCCCCHHHHHHHHHhC----C
Confidence 11 1 45677777654210 012355443 3 899999999886 4
Q ss_pred CCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-c-CCccCCCC-----C-CCCceeeee
Q 010303 130 IEKVFVIGGGQILSEALNAPECDAIHITEIETRI-E-CDTFIPSI-----D-SSVFQPWYS 182 (513)
Q Consensus 130 ~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~-~-GD~fFP~~-----~-~~~f~l~~~ 182 (513)
.++|+|.||+++..+||++++|||+++++.|..+ . |.++|+.. . ...|++++.
T Consensus 320 ~~~vlVEGG~~L~~sfL~agLVDEl~l~iaP~llG~~G~~lf~~~~~~~l~~~~~L~l~~~ 380 (402)
T 2g6v_A 320 INSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEI 380 (402)
T ss_dssp CCEEEECCCHHHHHHHHHHTCCCEEEEEECSCCCSSSSCBSCCCCC-------CCCEEEEE
T ss_pred CCEEEEEEhHHHHHHHHHCCCccEEEEEEccEEeCCCCcCCCCCccccccccccccEEeEE
Confidence 7899999999999999999999999999999988 3 67888653 1 235777654
No 48
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.42 E-value=5.9e-12 Score=130.78 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=115.0
Q ss_pred CCCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCC---CCCCCCCc-EEE
Q 010303 19 NPKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE---HRPLPGRL-NVV 93 (513)
Q Consensus 19 ~~mrki~livAvs~dG~IG~-~g~LpW~~peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~---~~pl~~R~-~iV 93 (513)
..++.+++.+|+|+||+|+. +|+..|..+++.+++.++... .++|||||+||+..... .++....| .||
T Consensus 157 ~~rP~V~lk~A~SLDG~IA~~~G~s~Wit~~~~~~~~~lr~~------~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rvV 230 (360)
T 2hxv_A 157 KKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNI------YSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVI 230 (360)
T ss_dssp HSSCEEEEEEEEETTSEEECTTSCCTTSCSTTHHHHHHHHHH------SSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEE
T ss_pred cchhhheeehhhccCCcccCCCCCcccCCHHHHHHHHHHHHH------CCEEEECccchhhhCCcccccCCCCCCCeEEE
Confidence 34788999999999999975 888899654455666666542 78999999999864110 12222334 599
Q ss_pred EcCCCCCCCC-----CC-CCEE-EE-----------------CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCC
Q 010303 94 LTRSGSFDIA-----TV-ENVV-IC-----------------GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP 149 (513)
Q Consensus 94 lSrt~~~~~~-----~~-~~v~-v~-----------------~sleeai~~l~~~~~~~~~~~I~ViGG~~Iy~~~L~~~ 149 (513)
+|++...... .. ...+ ++ .|+.++++.|++. +.++|+|.||+++..+||+++
T Consensus 231 ld~~~~~p~~~~~~~~~~~~~iv~t~~~~~~~~~~v~v~~~~~dl~~~l~~L~~~----g~~~vlVeGG~~L~~sfL~ag 306 (360)
T 2hxv_A 231 LDRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYER----DIDSVLVEGGSKVFSEFLDHA 306 (360)
T ss_dssp ECTTCTTTTCCCGGGSSSSCEEEEESCSSCCCCTTSEEEECCCCHHHHHHHHHHT----TCCEEEECCCHHHHHHHGGGC
T ss_pred ECCCCCCChhHhHHhcCCCcEEEEECCCchhhccCcEEEcCCCCHHHHHHHHHhC----CCCEEEEEecHHHHHHHHHCC
Confidence 9987532111 00 1222 22 3899999999886 478999999999999999999
Q ss_pred CcCEEEEEEECccc-cCCccCCC----CC-CCCceeeeeecCcccCCccEEEEEEEEc
Q 010303 150 ECDAIHITEIETRI-ECDTFIPS----ID-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (513)
Q Consensus 150 lvDel~LT~I~~~~-~GD~fFP~----~~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (513)
||+++++.|..+ +|-++|.. +. ...|++++... .+++ ....|.++
T Consensus 307 --DEl~l~iaP~llG~G~~lf~~~~~~~~~~~~L~l~~~~~--~g~d---v~l~y~~~ 357 (360)
T 2hxv_A 307 --DVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEF--SDSE---FLVEMRPC 357 (360)
T ss_dssp --SEEEEEEESCCCSSSEETTTTCCCCTTSCCCEEEEEEEE--ETTE---EEEEEEEC
T ss_pred --CEEEEEEcceEEcCCCcccccccccccccccceEeEEEE--ECCc---EEEEEEeC
Confidence 999999999988 45577743 22 23577765432 2332 45677654
No 49
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=99.35 E-value=3.8e-11 Score=119.87 Aligned_cols=169 Identities=16% Similarity=0.148 Sum_probs=114.1
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccccCCC--C----CC------
Q 010303 20 PKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE--H----RP------ 85 (513)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~LpW~~-peD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~--~----~p------ 85 (513)
.++++++.+|+|+||+ +. +|...|.. +++..++.++-.. .++|||||+||+.--.. . +|
T Consensus 32 ~rP~V~lk~a~SLDG~-a~~~g~s~wit~~~~~~~~~~lr~~------~DaIlvG~~T~~~d~p~l~~~~~r~~~~r~~~ 104 (270)
T 2p4g_A 32 NEPECRAIAITSINGS-ATLSGVSGPMGDQTDADLLIQLRGW------ADAIVVGAETARKENYGPVVLPHGIKNQRQKL 104 (270)
T ss_dssp HCCEEEEEEEEETTSB-SCBTTBSGGGCCHHHHHHHHHHHHH------CSEEEEEHHHHHHTTCCSCCCCHHHHHHHHHT
T ss_pred CCCEEEEEEEECCCCC-cCCCCCccCcCCHHHHHHHHHHHHH------CCEEEEChHHhhhhCCcccccccccccccccc
Confidence 4688999999999999 65 88888963 5566666665542 78999999999742100 0 00
Q ss_pred -C-CCCcEEEEcCCCCCCC---------CC--------------------------CCCE--EEE----CCHHHHHHHHH
Q 010303 86 -L-PGRLNVVLTRSGSFDI---------AT--------------------------VENV--VIC----GSIGSALELLA 122 (513)
Q Consensus 86 -l-~~R~~iVlSrt~~~~~---------~~--------------------------~~~v--~v~----~sleeai~~l~ 122 (513)
. +..+.+|++++..... .. ..++ +++ .++.++++.|+
T Consensus 105 g~~~~p~~vV~d~~~~~p~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~ 184 (270)
T 2p4g_A 105 GRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALH 184 (270)
T ss_dssp TCCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred CCCCCCcEEEECCCCCCCccchhhcCCCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHH
Confidence 0 1123455554421100 00 0022 222 26889999998
Q ss_pred cCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcccc--CCccCCC--CC-CCCceeeeeecCccc-CCccEEEE
Q 010303 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIE--CDTFIPS--ID-SSVFQPWYSSFPIVE-NNIRYCLS 196 (513)
Q Consensus 123 ~~~~~~~~~~I~ViGG~~Iy~~~L~~~lvDel~LT~I~~~~~--GD~fFP~--~~-~~~f~l~~~~~~~~e-~~~~~~f~ 196 (513)
+. +.++|+|.||+++..+||++++|||+++++.|..+. |-++|.. .. ...|++++... .. + +..+.
T Consensus 185 ~~----g~~~vlvEGG~~l~~sfL~agLVDEl~l~iaP~llG~~g~~~f~~~~~~~~~~l~l~~~~~--~~~~--g~v~l 256 (270)
T 2p4g_A 185 AR----RLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLS--SSPN--GLIFS 256 (270)
T ss_dssp TT----TCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEEE--ECTT--CCEEE
T ss_pred HC----CCCEEEEecCHHHHHHHHHCCCCeEEEEEEcCEEEcCCCcCcccCcCcCcCcceEEEEEEE--eccC--CEEEE
Confidence 76 578999999999999999999999999999999883 6678866 22 34788875532 11 3 35889
Q ss_pred EEEEccc
Q 010303 197 TYVRVRS 203 (513)
Q Consensus 197 ~Y~r~~~ 203 (513)
.|.+.+.
T Consensus 257 ~Y~~~~~ 263 (270)
T 2p4g_A 257 RYKVIRD 263 (270)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9988644
No 50
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=20.99 E-value=84 Score=24.48 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=33.2
Q ss_pred HHHHcCCcceeEEEEEccccccccchhhHHHHhhcCCCCCCeEEe
Q 010303 437 IAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKI 481 (513)
Q Consensus 437 iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~ 481 (513)
-|...||++|..+..++...|-.-..+++..+|++.+-..-.+.+
T Consensus 41 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~ 85 (95)
T 3r68_A 41 PAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 85 (95)
T ss_dssp HHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 377899999999999999988776667777888774433333333
No 51
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=20.38 E-value=1.3e+02 Score=23.19 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHcCCcceeEEEEEccccccccchhhHHHHhhcCCCCCCeEEeC
Q 010303 438 AHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 482 (513)
Q Consensus 438 A~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~ 482 (513)
|...||++|..+..++..-+-.-..+.+.++++..+-..-.+.+.
T Consensus 40 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 84 (91)
T 1g9o_A 40 AEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD 84 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEc
Confidence 788999999999999998887655666777777655333334443
Done!