RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010303
(513 letters)
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 822 bits (2124), Expect = 0.0
Identities = 225/526 (42%), Positives = 307/526 (58%), Gaps = 40/526 (7%)
Query: 21 KRSYQVVVAAT-RDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI 79
+++ +VVAA+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI
Sbjct: 3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSI 62
Query: 80 PLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGG 139
RPL R+ VV++ S D A NVV+ ++ ++E L SIE +FV GG
Sbjct: 63 G--RRPLKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMNDD---SIENIFVCGGE 116
Query: 140 QILSEALNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTY 198
I +AL D I++T + IE DT+ P I + F P Y S NI Y +
Sbjct: 117 SIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIF 175
Query: 199 VRVRSAAVESLSQNND---------------IVLDSKTNSDKFEVKQFSFLPKMVFEK-H 242
+ +++ + N KF ++ P + F + H
Sbjct: 176 EKQEKKTLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSIRFGREH 235
Query: 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEEL 302
E+ YL L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKV R + EEL
Sbjct: 236 YEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEEL 295
Query: 303 LWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTN 362
+WFI G TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y
Sbjct: 296 IWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKT 355
Query: 363 MHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ-------- 414
MH DY+G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +Q
Sbjct: 356 MHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNC 415
Query: 415 -------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 467
RS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L+E
Sbjct: 416 LSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKE 475
Query: 468 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
QL + P+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 476 QLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 810 bits (2094), Expect = 0.0
Identities = 207/524 (39%), Positives = 301/524 (57%), Gaps = 31/524 (5%)
Query: 10 SNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEIT------QITSD 62
G++S + VA + IG ++PW + D +F + T ++ +
Sbjct: 1 GPGSMSNSYEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKN 60
Query: 63 AGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLA 122
+N VI GRKT+ESIP PL R+NV+L+R+ + V ++ + +A+ L
Sbjct: 61 PDIQNVVIFGRKTYESIPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLR 116
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182
A+ K+F++GG + E L+ CD I++T + DT+ P I + F+
Sbjct: 117 ANV---PHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDT-FEITAI 172
Query: 183 SFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKH 242
S + + Y Y R V + +++ ++ P + H
Sbjct: 173 SPTFSTDFVSYDFVIYERKDCKTVFPDPPFDQLLMTGTDI--SVPKPKYVACPGVRIRNH 230
Query: 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEEL 302
EE+ YL ++ D++S G LK +RTGT SKFG QMR++L +FPLLTTKKV R ++EEL
Sbjct: 231 EEFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEEL 290
Query: 303 LWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTN 362
LWFI GSTN L K++ IW+ N R++LD G TDREE DLGP+YGFQWRHFGA Y +
Sbjct: 291 LWFIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLD 350
Query: 363 MHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ-------- 414
MHADY+G+G DQL ++IN+IK NPNDRR+++ +WN SDLK MALPPCH F Q
Sbjct: 351 MHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKL 410
Query: 415 ------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQ 468
RS D+GLGVPFNIASY++LT M+A VC L G+F+H + DAH+Y +HV + Q
Sbjct: 411 SCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQ 470
Query: 469 LQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 512
+ ++P PFP L++NP+ ++I+ F +D + Y H I M M+
Sbjct: 471 IARIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMS 514
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 776 bits (2006), Expect = 0.0
Identities = 236/549 (42%), Positives = 310/549 (56%), Gaps = 67/549 (12%)
Query: 3 ADSKTSLSNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT----- 57
+ K + R++ +VVA GIG +PW +P D+KFF+++T
Sbjct: 2 SLFKIRMPETVAEGTRLALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRG 61
Query: 58 -QITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF-------------DIA 103
+ KRNAV+MGRKTW+SIP + RPLPGRLNVVL+ + + ++
Sbjct: 62 KNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLH 121
Query: 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECD---AIHITEIE 160
V + G + AL LLA+ Y SIE V+ IGGG + +EAL P AI+ T I
Sbjct: 122 ADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYRTTIR 181
Query: 161 TR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDS 219
C F F + E+ + + + E S N +
Sbjct: 182 ASESSCSVF---------------FRVPESGTEAAAGIEWQRETISEELTSANGN----- 221
Query: 220 KTNSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRY 279
+ + K++ EE YL LV II +GN+K DRTG GTLS FG QMR+
Sbjct: 222 ---------ETKYYFEKLIPRNREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRF 272
Query: 280 NLRT-TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLT 338
+LR PLLTTK+VFWRGV EELLWF+ G T AK L +K +HIWD N SR +LDS GLT
Sbjct: 273 SLRNNRLPLLTTKRVFWRGVCEELLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLT 332
Query: 339 DREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNP 398
+ EE DLGPVYGFQWRHFGA YT+ A+Y GQG DQ+ ++ +K NP+DRR++ +AWNP
Sbjct: 333 EYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNP 392
Query: 399 SDLKLMALPPCHMFAQ--------------RSADMGLGVPFNIASYALLTCMIAHVCDLA 444
S L MALPPCH+ AQ RS DMGLGVPFNIASYALLT +IA L
Sbjct: 393 SALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452
Query: 445 PGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPH 504
PG+ +H +GDAHVY NHV P EQL+++P+ FP L E++ ++ + D ++I Y P+
Sbjct: 453 PGELVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPY 512
Query: 505 QKIEMKMAV 513
I MKMAV
Sbjct: 513 PPISMKMAV 521
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 729 bits (1883), Expect = 0.0
Identities = 212/603 (35%), Positives = 296/603 (49%), Gaps = 110/603 (18%)
Query: 6 KTSLSNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDA- 63
K N + +++ G+G G LPWK + D+K+F+ +T +++
Sbjct: 19 KVESKNEGKKNEVFNNYTFR---------GLGNKGVLPWKCISLDMKYFRAVTTYVNESK 69
Query: 64 ---------------------------GKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTR 96
+N V+MGR WESIP + +PL R+NV+L+R
Sbjct: 70 YEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMGRTNWESIPKKFKPLSNRINVILSR 129
Query: 97 SGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHI 156
+ + E+V I + + LL Y K F++GG + E L I+
Sbjct: 130 TLKKE-DFDEDVYIINKVEDLIVLLGKLNY----YKCFILGGSVVYQEFLEKKLIKKIYF 184
Query: 157 TEIETRIECDTFIPSID------------------------------SSVFQPWYSSFPI 186
T I + ECD F P I+ + +
Sbjct: 185 TRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEE 244
Query: 187 VENNIRYCLSTYVRVRSAAVESLSQNNDIV-----------------------LDSKTNS 223
N++ + +N D + N
Sbjct: 245 KNNDMPLKNDDKDTCHMKKLTEFYKNVDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNK 304
Query: 224 DKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT 283
+ F + ++ H EY YL ++ DI+ +GN + DRTG G LSKFG M+++L
Sbjct: 305 NSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQ 364
Query: 284 TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEG 343
FPLLTTKK+F RG++EELLWFI G TN L K++ IW+ N +RE+LD+ L RE
Sbjct: 365 YFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVN 424
Query: 344 DLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403
DLGP+YGFQWRHFGA YTNM+ +Y +G DQL ++IN IKN+P RRI+L AWN DL
Sbjct: 425 DLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQ 484
Query: 404 MALPPCHMFAQ--------------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFI 449
MALPPCH+ Q RS D+GLGVPFNIASY++ T MIA VC+L P FI
Sbjct: 485 MALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFI 544
Query: 450 HVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEM 509
HV+G+AHVY NH+ L+ QL ++P PFP LK+NP+ K+I+ F DF + Y H+KI M
Sbjct: 545 HVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISM 604
Query: 510 KMA 512
MA
Sbjct: 605 DMA 607
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C*
1j3j_C* 3dg8_C* 3dga_C*
Length = 328
Score = 556 bits (1434), Expect = 0.0
Identities = 159/320 (49%), Positives = 207/320 (64%), Gaps = 14/320 (4%)
Query: 207 ESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTG 266
+ N + N + F + ++ H EY YL ++ DI+ +GN + DRTG
Sbjct: 8 DDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTG 67
Query: 267 TGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGN 326
G LSKFG M+++L FPLLTTKK+F RG++EELLWFI G TN L K++ IW+ N
Sbjct: 68 VGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEAN 127
Query: 327 ASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNP 386
+RE+LD+ L RE DLGP+YGFQWRHFGA YTNM+ +Y +G DQL ++IN IKN+P
Sbjct: 128 GTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDP 187
Query: 387 NDRRIVLSAWNPSDLKLMALPPCHMFAQ--------------RSADMGLGVPFNIASYAL 432
RRI+L AWN DL MALPPCH+ Q RS D+GLGVPFNIASY++
Sbjct: 188 TSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSI 247
Query: 433 LTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFV 492
T MIA VC+L P FIHV+G+AHVY NH+ L+ QL ++P PFP LK+NP+ K+I+ F
Sbjct: 248 FTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFT 307
Query: 493 AEDFKLIGYDPHQKIEMKMA 512
DF + Y H+KI M MA
Sbjct: 308 ISDFTIQNYVHHEKISMDMA 327
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME;
2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Length = 355
Score = 546 bits (1410), Expect = 0.0
Identities = 186/346 (53%), Positives = 222/346 (64%), Gaps = 14/346 (4%)
Query: 182 SSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEK 241
+ P EN V N + + +
Sbjct: 10 TDIPTTENLTFQGACRLVANCRDVRCRRLLRNVMPVAGSELPRRPLPPAAQERDAEPRPP 69
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 70 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 129
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 130 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 189
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ------- 414
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH Q
Sbjct: 190 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 249
Query: 415 -------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 467
RS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 250 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 309
Query: 468 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 310 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase,
nucleotide biosynthesis; 1.56A {Homo sapiens} PDB:
3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A
3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A
3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* 1juj_A* 3egy_X* ...
Length = 295
Score = 536 bits (1382), Expect = 0.0
Identities = 181/286 (63%), Positives = 213/286 (74%), Gaps = 14/286 (4%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 10 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 69
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 70 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 129
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ------- 414
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH Q
Sbjct: 130 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 189
Query: 415 -------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 467
RS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 190 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 249
Query: 468 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 250 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex,
transferase; HET: UMP F89; 1.90A {Pneumocystis carinii}
SCOP: d.117.1.1 PDB: 1ci7_A*
Length = 297
Score = 529 bits (1365), Expect = 0.0
Identities = 173/294 (58%), Positives = 216/294 (73%), Gaps = 22/294 (7%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFG-CQMRYNLRT-TFPLLTTKKVFWRGVV 299
EE YL LVQ II+ G + DRTGTGTLS F ++++LR TFPLLTTK+VF RGV+
Sbjct: 4 AEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVI 63
Query: 300 EELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGAR 359
EELLWFI G T++ L+EK+IHIWD N SREYLDS+GLT R+EGDLGP+YGFQWRHFGA
Sbjct: 64 EELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAE 123
Query: 360 YTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ----- 414
Y + +Y GQG DQL ++I KI+ +P DRR++LSAWNP+DL+ MALPPCHMF Q
Sbjct: 124 YIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHI 183
Query: 415 ---------------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYR 459
RS DMGLGVPFNIASYALLTCMIAHVCDL PGDFIHV+GD H+Y+
Sbjct: 184 PSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYK 243
Query: 460 NHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
+H+ L++QL + P+PFP L +N DI+ F +DF + Y P++ I+MKM++
Sbjct: 244 DHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide
biosynthesis, transferase; HET: UMP CB3; 2.08A
{Filobasidiella neoformans}
Length = 317
Score = 521 bits (1344), Expect = 0.0
Identities = 170/301 (56%), Positives = 205/301 (68%), Gaps = 28/301 (9%)
Query: 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRT-TFPLLTTKKVFWRG 297
HEEY YL L++ II+ G ++ DRTGTGT++ F R++L T PLLTTK+VF RG
Sbjct: 16 PDHEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRG 75
Query: 298 VVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFG 357
V+ ELLWF+SG T+AK+L + + IWDGN S+E+L+ VGL R EGDLGPVYGFQWRHFG
Sbjct: 76 VIAELLWFVSGCTDAKMLSSQGVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFG 135
Query: 358 ARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ--- 414
A YT+ DY G+G DQL VI+ IKNNP DRRI+LSAWNP DL LMALPPCHMF Q
Sbjct: 136 AEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFV 195
Query: 415 --------------------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGD 454
RS D+GLGVPFNIASYALLT MIA + D P +FI +GD
Sbjct: 196 SLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGD 255
Query: 455 AHVYRNHVRPLEEQLQKLPKPFPILKI---NPEKKDIDSFVAEDFKLIGYDPHQKIEMKM 511
AHVYR+HV PL+ QL++ P+ FP LK E DID F EDF + GY P KI+MKM
Sbjct: 256 AHVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKM 315
Query: 512 A 512
+
Sbjct: 316 S 316
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode,
methyltransferase, nucleotide biosynt transferase,
structural genomics; 2.20A {Encephalitozoon cuniculi}
Length = 294
Score = 516 bits (1331), Expect = 0.0
Identities = 156/290 (53%), Positives = 210/290 (72%), Gaps = 18/290 (6%)
Query: 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGV 298
+H E+ YL LV+ I+ +G + DRTGTGTLS FG MR++L TFPLLTT++VF+RGV
Sbjct: 5 PRHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGV 64
Query: 299 VEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGA 358
VEELL+F+ G T++KVL++K + IW+ N ++++L SVG+ DREEGDLGP+YGFQWRHFGA
Sbjct: 65 VEELLFFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHFGA 123
Query: 359 RYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ---- 414
RY + Y G+G DQ+ I I+ NP RRIV+SAWNP+DL MALPPCH+ Q
Sbjct: 124 RYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGSMALPPCHVLFQFNVT 183
Query: 415 ----------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 464
RS DMGLGVPFNIASY+LLT ++AH+ L PG+F+H +GDAHVY +HV
Sbjct: 184 DGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDS 243
Query: 465 LEEQLQKLPKPFPILKINPE--KKDIDSFVAEDFKLIGYDPHQKIEMKMA 512
L +Q+Q+ P+ FP L ++P+ + + + F EDF+L+GYDPH I+M M+
Sbjct: 244 LRQQIQRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMS 293
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural
center for infectious DISE brucellosis, orchitis,
epididymitis, mastitis; 2.20A {Brucella melitensis}
Length = 360
Score = 486 bits (1253), Expect = e-171
Identities = 145/389 (37%), Positives = 201/389 (51%), Gaps = 58/389 (14%)
Query: 151 CDAIHITEIETRIECDTFIP----SIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAV 206
H E++ ++ +T I S +F + P+ R+ A
Sbjct: 4 HHHHHSGEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLR------------RLMEAFA 51
Query: 207 ESLSQNNDIVL---DSKTNSDKFEVKQFSFLPKMVFEKHEEYL-----YLRLVQDIISDG 258
+ + D + D + + E H E + YL L+Q ++ G
Sbjct: 52 KRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMRTYLDLLQHVLDHG 111
Query: 259 NLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEK 318
+DDRTGTGT S FG QMR++L FP+LTTKK+ R ++ ELLWF+ G TN L+E
Sbjct: 112 VDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKEN 171
Query: 319 DIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDV 378
+ IWD E+ D E GDLGPVYG+QWR + A G+ DQ+ ++
Sbjct: 172 GVTIWD-----EWAD-------ENGDLGPVYGYQWRSWPA--------PDGRHIDQIANL 211
Query: 379 INKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ--------------RSADMGLGVP 424
+ + NP RR+++SAWNP+ + MALPPCH Q RSAD+ LGVP
Sbjct: 212 LKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVP 271
Query: 425 FNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPE 484
FNIASYALLT MIA V L PG+FIH +GDAH+Y NH QL + PK P++ INP+
Sbjct: 272 FNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPD 331
Query: 485 KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
KD+ +F EDF+L GY+ I+ +AV
Sbjct: 332 VKDLFAFRFEDFRLDGYEADPTIKAPIAV 360
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics,
seattle S genomics center for infectious disease,
transferase; HET: CIT; 1.65A {Burkholderia
thailandensis}
Length = 327
Score = 483 bits (1245), Expect = e-170
Identities = 92/326 (28%), Positives = 143/326 (43%), Gaps = 53/326 (16%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300
YL LV+ I+ G + +RTG T+ G +R++L+ FP +TTKK+ ++ +
Sbjct: 2 PGSMKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIG 61
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGA-- 358
EL+ F+ + +A + +WD NA+ R DLG VYG QWR +
Sbjct: 62 ELVGFLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYK 121
Query: 359 ------------------------RYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLS 394
+ DQL D ++ I +P+ RRI+
Sbjct: 122 VLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFH 181
Query: 395 AWNPSDLKLMALPPCHMFA----------------QRSADMGLGVPFNIASYALLTCMIA 438
WNP+ L +ALP CH+ RS D+GLG PFN+A A L ++
Sbjct: 182 GWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVG 241
Query: 439 HVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKD----------- 487
+ +P F + IGDAH+Y N + L++QL++ P P L++ D
Sbjct: 242 RLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQW 301
Query: 488 IDSFVAEDFKLIGYDPHQKIEMKMAV 513
++ DF L+GY H+ + MAV
Sbjct: 302 LERVEPSDFTLVGYRHHEPLSAPMAV 327
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG; HET: UMP;
2.71A {Staphylococcus aureus}
Length = 321
Score = 466 bits (1200), Expect = e-164
Identities = 127/325 (39%), Positives = 172/325 (52%), Gaps = 61/325 (18%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300
+ Y L ++++ GN ++DRT TGT+SKFG Q+R++L FPLLTTKKV ++ V
Sbjct: 6 NSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVAT 65
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTD--------------------- 339
ELLWFI G TN + L + + +IW+ A Y+ S
Sbjct: 66 ELLWFIKGDTNIQYLLKYNNNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYK 125
Query: 340 -----------------REEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKI 382
++ GDLG VYG QWR + D G FDQL VI +I
Sbjct: 126 EQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQI 177
Query: 383 KNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ--------------RSADMGLGVPFNIA 428
K+NP+ RR ++SAWNP+++ MALPPCH Q RSAD+ LGVPFNIA
Sbjct: 178 KHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIA 237
Query: 429 SYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDI 488
SYALLT +IA C L G+F+H GDAH+Y NH+ ++ QL + P LKIN K I
Sbjct: 238 SYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINS-DKSI 296
Query: 489 DSFVAEDFKLIGYDPHQKIEMKMAV 513
ED +++ Y+ H I+ +AV
Sbjct: 297 FDINYEDLEIVDYESHPAIKAPIAV 321
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase,
methyltransferase, nucleot biosynthesis; HET: 7C1 UMP;
2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A*
1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A*
3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A*
1tsz_A 1tdb_A* 1tda_A* ...
Length = 316
Score = 464 bits (1196), Expect = e-163
Identities = 134/322 (41%), Positives = 175/322 (54%), Gaps = 60/322 (18%)
Query: 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
E YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 304 WFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTD------------------------ 339
WF+ G TN + L + HIWD A +++ S
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 340 --------------REEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNN 385
+ GDLG VYG QWR + G DQL DVI +IK +
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHT--------SKGDTIDQLGDVIEQIKTH 174
Query: 386 PNDRRIVLSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYA 431
P RR+++SAWNP D+ MALPPCH QRSAD+ LGVPFNIASYA
Sbjct: 175 PYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYA 234
Query: 432 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSF 491
LLT ++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F
Sbjct: 235 LLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDF 294
Query: 492 VAEDFKLIGYDPHQKIEMKMAV 513
+D KL+ YDP+ I+ +AV
Sbjct: 295 DMKDIKLLNYDPYPAIKAPVAV 316
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP,
antifolate, high-resolution, ternar complex, beta sheet,
alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia
coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A*
1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A*
1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A*
3bhl_A* 3bhr_A* 3tms_A ...
Length = 264
Score = 460 bits (1186), Expect = e-162
Identities = 126/281 (44%), Positives = 167/281 (59%), Gaps = 34/281 (12%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD A E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWDEWAD------------ENGDLGPVYGKQWRAWPT-------- 103
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ------------ 414
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F Q
Sbjct: 104 PDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 415 --RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 472
RS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 473 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural
genomics, TB structural GEN consortium, TBSGC,
transferase; HET: UMP SPM; 2.50A {Mycobacterium
tuberculosis}
Length = 264
Score = 455 bits (1173), Expect = e-160
Identities = 121/281 (43%), Positives = 164/281 (58%), Gaps = 35/281 (12%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
Y L++ ++ G K DRTGTGT S FG QMRY+L FPLLTTKKV ++ V ELLWF+
Sbjct: 5 YEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFL 64
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G +N L E + IWD AS + G+LGP+YG QWR + A
Sbjct: 65 RGDSNIGWLHEHGVTIWDEWAS------------DTGELGPIYGVQWRSWPA-------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ------------ 414
SG+ DQ+ ++ ++ +P+ RRI++SAWN +++ MALPPCH F Q
Sbjct: 105 PSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQL 164
Query: 415 --RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 472
RSAD+ LGVPFNIASYALLT M+A L+ G+FI GD H+Y NHV + QL +
Sbjct: 165 YQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSRE 224
Query: 473 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
P+P+P L + ++ I + ED + YDPH I+ +AV
Sbjct: 225 PRPYPKLLL-ADRDSIFEYTYEDIVVKNYDPHPAIKAPVAV 264
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A
{Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A
1bsp_A 1b02_A*
Length = 278
Score = 452 bits (1166), Expect = e-159
Identities = 101/297 (34%), Positives = 144/297 (48%), Gaps = 45/297 (15%)
Query: 242 HEEYLYLRLVQDIISDGNLKD----------DRTGTGTLSKFGCQMRYNLRTTFPLLTTK 291
+ Y +++DII++G + D T TLS QMR++ P+LTTK
Sbjct: 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSE-VPILTTK 60
Query: 292 KVFWRGVVEELLWFISGSTN-AKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYG 350
KV W+ ++ELLW +N L +HIWD +E+G +G YG
Sbjct: 61 KVAWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWK------------QEDGTIGHAYG 108
Query: 351 FQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCH 410
FQ + +G+ DQ+ +++++KNNP+ RR + WNP +L MAL PC
Sbjct: 109 FQLGKK-------NRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCV 161
Query: 411 MFAQ--------------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 456
Q RS DM LG PFN+ Y +L MIA V G++I IGD H
Sbjct: 162 YETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCH 221
Query: 457 VYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
VY H+ L+ Q+++ P L INPE KD F +DFKLI Y K+ ++AV
Sbjct: 222 VYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A
{Enterobacteria phage T4} SCOP: d.117.1.1
Length = 286
Score = 451 bits (1162), Expect = e-158
Identities = 122/300 (40%), Positives = 168/300 (56%), Gaps = 50/300 (16%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
Y L++DI +G DDRTGTGT++ FG ++R++L FP +TTKK+ W+ + EL+WF+
Sbjct: 4 YQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFL 63
Query: 307 SGSTNAKVLQE-------KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGAR 359
SGSTN L+ + +WD N + D G+LGP+YG QWR FG
Sbjct: 64 SGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKD----LGYHSGELGPIYGKQWRDFG-- 117
Query: 360 YTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ----- 414
G DQ+++VI++IK PNDRR ++SAWNP++LK MALPPCHMF Q
Sbjct: 118 -----------GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRN 166
Query: 415 ---------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 465
RS D+ LG+PFNIASYA L ++A +C+L PGD I G+ H+Y NHV
Sbjct: 167 GYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQC 226
Query: 466 EEQLQKLPKPFPILKIN------------PEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
+E L++ PK L I+ + K + +DF L Y H I+ KMAV
Sbjct: 227 KEILRREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing
complex, transferase; HET: DCM; 1.60A {Enterobacteria
phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Length = 246
Score = 337 bits (866), Expect = e-114
Identities = 43/267 (16%), Positives = 79/267 (29%), Gaps = 56/267 (20%)
Query: 237 MVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWR 296
M+ + + + + + D+TG T+ G + F L +
Sbjct: 1 MISDSMTVEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEY---- 56
Query: 297 GVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHF 356
+ EL W+ S S K + + IW A +G++ YG+
Sbjct: 57 -IQRELEWYKSKSLFVKDIPGETPKIWQQVA------------SSKGEINSNYGWAI--- 100
Query: 357 GARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS-----DLKLMALPPCHM 411
+S + Q + ++ NP+ RR ++ PS + M+ C
Sbjct: 101 ----------WSEDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTN 150
Query: 412 FAQ--------------RSADMGLGVPFNIASYALLTCMIAHVC-------DLAPGDFIH 450
Q RS D+ G + A + + G I
Sbjct: 151 TVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIW 210
Query: 451 VIGDAHVYRNHVRPLEEQLQKLPKPFP 477
+G HVY H ++ +
Sbjct: 211 NVGSLHVYSRHFYLVDHWWKTGETHIS 237
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A*
1j3j_A* 1j3i_A* 3dga_A*
Length = 280
Score = 253 bits (647), Expect = 4e-81
Identities = 59/260 (22%), Positives = 101/260 (38%), Gaps = 37/260 (14%)
Query: 17 QPNPKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKR--------- 66
+ + V G+G G LPWK + D+K+F+ +T +++
Sbjct: 21 ESKNEGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKY 80
Query: 67 -------------------NAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVEN 107
N V+MGR WESIP + +PL R+NV+L+R+ + E+
Sbjct: 81 LNKETVDNVNDMPNSKKLQNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD-ED 139
Query: 108 VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDT 167
V I + + LL Y K F++GG + E L I+ T I + ECD
Sbjct: 140 VYIINKVEDLIVLLGKLNY----YKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDV 195
Query: 168 FIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFE 227
F P I+ + +Q S NN Y + + + + + K +
Sbjct: 196 FFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGE-EKNNDMPLKND 254
Query: 228 VKQFSFLPKM--VFEKHEEY 245
K + K+ ++ ++Y
Sbjct: 255 DKDTCHMKKLTEFYKNVDKY 274
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs,
lipophilic antifolates; HET: LII NDP; 1.05A {Homo
sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A*
1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A*
1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A*
3ghw_A* 3ntz_A* 3nu0_A* ...
Length = 186
Score = 245 bits (627), Expect = 2e-79
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 8/185 (4%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP 80
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61
Query: 81 LEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQ 140
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG
Sbjct: 62 EKNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSS 119
Query: 141 ILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ-----PWYSSFPIVENNIRYCL 195
+ EA+N P + +T I E DTF P ID ++ P S E I+Y
Sbjct: 120 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STYVR 200
Y +
Sbjct: 180 EVYEK 184
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor
complexes, oxidoreducta oxidoreductase-oxidoreductase
inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis
carinii} PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A*
1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X*
3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Length = 206
Score = 234 bits (598), Expect = 8e-75
Identities = 70/205 (34%), Positives = 97/205 (47%), Gaps = 25/205 (12%)
Query: 19 NPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQ---ITSDAGKRNAVIMGRKT 75
N ++S ++VA T GIG+ LPWKL ++ +FK +T N V+MGRKT
Sbjct: 2 NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKT 61
Query: 76 WESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELL---AASPYCLSIEK 132
WESIPL+ RPL GR+NVV+TR+ S D+ + S+ ALELL S + I +
Sbjct: 62 WESIPLQFRPLKGRINVVITRNESLDLG--NGIHSAKSLDHALELLYRTYGSESSVQINR 119
Query: 133 VFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPS-IDSSVFQ------------- 178
+FVIGG Q+ A++ P+ D I T I I CD F P +
Sbjct: 120 IFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLES 179
Query: 179 ---PWYSSFPIVENNIRYCLSTYVR 200
I E+ Y + R
Sbjct: 180 WVGTKVPHGKINEDGFDYEFEMWTR 204
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB:
3qfx_A*
Length = 240
Score = 226 bits (578), Expect = 2e-71
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 33/228 (14%)
Query: 6 KTSLSNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT------QI 59
K + P R + VVVA+ GIG G +PW++P D+++F+ +T +
Sbjct: 11 KIPVHELAGKISRPPLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNV 70
Query: 60 TSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATV-------------E 106
KRNAV+MGRKTW+S+P + RPL RLNVVL+RS + + +
Sbjct: 71 KPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAAND 130
Query: 107 NVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPEC---DAIHITEIETR- 162
V + G + AL +L + + SIE VF IGGG I +AL AP AIH T +
Sbjct: 131 VVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPAS 190
Query: 163 IECDTFIPSIDSSVFQPWYSSF----------PIVENNIRYCLSTYVR 200
C F + P +Y V
Sbjct: 191 NSCSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVP 238
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase;
HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A*
3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Length = 227
Score = 225 bits (574), Expect = 6e-71
Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 11/224 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
+V A +MGIG G LPW+L ++K+F+E+T +T+D K+N VIMGRKTWESIP + RP
Sbjct: 9 IVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRP 68
Query: 86 LPGRLNVVLTRSGSFDIATV-ENVVICGSIGSALELLAASP-YCLSIEKVFVIGGGQILS 143
LP R+NVV++RS ++ V + + S+ + L L +S IE++++IGGG+I
Sbjct: 69 LPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYR 128
Query: 144 EALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRS 203
+++ D IT+I +T IP +D+ + + ++
Sbjct: 129 QSM--DLADHWLITKIMP--LPETTIPQMDTFLQKQELEQRFYDNSDKLVDFLPSSIQLE 184
Query: 204 AAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHEEYLY 247
+ S N ++V + K + F + +K E + +
Sbjct: 185 GRLTSQEWNGELVKG-----LPVQEKGYQFYFTLYTKKLEHHHH 223
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target;
HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1
PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A*
1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Length = 192
Score = 222 bits (567), Expect = 2e-70
Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 24/191 (12%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
+V A +GIG GK+PW+L ++++FK++T T+ RNAVIMGRKTWESIP + RP
Sbjct: 9 IVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRP 68
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LP RLN++L+RS +I +N++ SI S+L L++ +E+VF+IGG +I +E
Sbjct: 69 LPDRLNIILSRSYENEIID-DNIIHASSIESSLNLVS------DVERVFIIGGAEIYNEL 121
Query: 146 LNAPECDAIHITEIETR----IECDTFIPSIDSSVFQPW------------YSSFPIVEN 189
+N + ITEIE IE DTF+ + I E
Sbjct: 122 INNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESWTKQPKSELQKFVGDTVLEDDIKEG 180
Query: 190 NIRYCLSTYVR 200
+ Y + + R
Sbjct: 181 DFTYNYTLWTR 191
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax,
pyrimethamine, malaria, drug resistance, oxidoreductase;
HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A*
2blc_A* 2bla_A*
Length = 238
Score = 212 bits (541), Expect = 6e-66
Identities = 60/214 (28%), Positives = 85/214 (39%), Gaps = 44/214 (20%)
Query: 27 VVAATRDMGIGKDGKLPWKLPS-DLKFFKEITQITSDA---------------------- 63
+ G+G G LPWK S D+K+F +T ++
Sbjct: 30 PFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGG 89
Query: 64 ----------------GKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVEN 107
+N V+MGR +WESIP +++PLP R+NVVL+++ + + E
Sbjct: 90 DNTSGGDNTHGGDNADKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKEDVK-EK 148
Query: 108 VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDT 167
V I SI L LL Y K F+IGG Q+ E L+ I+ T I CD
Sbjct: 149 VFIIDSIDDLLLLLKKLKY----YKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDV 204
Query: 168 FIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201
F P D S F+ S Y +V
Sbjct: 205 FFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV 238
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A
{Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A*
1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A
2lf1_A*
Length = 162
Score = 180 bits (460), Expect = 6e-55
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A R+ IGKDG LPW LP DL +F+ T GK +++GR+T+ES P RPL
Sbjct: 4 LWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTV-----GK--IMVVGRRTYESFP--KRPL 54
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P R NVVLT + + V+ + + +++ + GG QI +
Sbjct: 55 PERTNVVLTHQEDY---QAQGAVVVHDVAAVFAYAKQHL----DQELVIAGGAQIFTAFK 107
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENN-IRYCLSTYVR 200
+ D + +T + E DT + ++ F S N + + + +
Sbjct: 108 --DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQK 160
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A
{Geobacillus stearothermophilus}
Length = 164
Score = 179 bits (457), Expect = 2e-54
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD +LPW LP+DL +FK +T G A++MGRKT+E+I RPL
Sbjct: 5 IVAMDENRVIGKDNRLPWHLPADLAYFKRVTM-----GH--AIVMGRKTFEAIG---RPL 54
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR NVV+T + SF E ++ S+ + +A+ ++VF+IGG ++ +
Sbjct: 55 PGRDNVVVTGNRSFRP---EGCLVLHSLEEVKQWIASRA-----DEVFIIGGAELFRATM 106
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVRVRS 203
P D +++T+I DTF P I ++ + +N + Y R ++
Sbjct: 107 --PIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYTPGGKDEKNPYEHAFIIYERKKA 163
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET:
NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Length = 162
Score = 178 bits (454), Expect = 5e-54
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 23/178 (12%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A + IG D K+PW LP++L+ FK T GK ++MGR T+ESI RPL
Sbjct: 6 IAALANNRVIGLDNKMPWHLPAELQLFKRATL-----GK--PIVMGRNTFESIG---RPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGRLN+VL+R + E V + ++ A+ +E++ +IGG I ++ L
Sbjct: 56 PGRLNIVLSRQTDYQP---EGVTVVATLEDAVVA------AGDVEELMIIGGATIYNQCL 106
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVRVR 202
D +++T IE E DT+ P + +Q +N Y S RV+
Sbjct: 107 --AAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEHESYAADDKNPHNYRFSLLERVK 162
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon
metabolism, lipophilic antifolates, NADP,
oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium
avium} PDB: 2w3v_A*
Length = 167
Score = 178 bits (454), Expect = 5e-54
Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
V A + IG+ G +PW +P DL FKE+T G VIMGR+TWES+P + RPL
Sbjct: 9 VWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTM-----GH--TVIMGRRTWESLPAKVRPL 61
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR NVV++R F E + GS+ +AL + +VIGG QI AL
Sbjct: 62 PGRRNVVVSRRPDFVA---EGARVAGSLEAALAYAGSD------PAPWVIGGAQIYLLAL 112
Query: 147 NAPECDAIHITEIETRI---ECDTFIPSIDSS---VFQPWYSSFPIVENNIRYCLSTYVR 200
P +TEIE + + D P++D S W +S + +RY +Y R
Sbjct: 113 --PHATRCEVTEIEIDLRRDDDDALAPALDDSWVGETGEWLAS----RSGLRYRFHSYRR 166
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib
complex; HET: NDP TOP; 1.90A {Coxiella burnetii} PDB:
3tq9_A* 3tqa_A* 3tqb_A*
Length = 178
Score = 178 bits (454), Expect = 8e-54
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 23/179 (12%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A ++ IG++ +LPW LP+DL FK IT GK ++MGR+T++SI +PL
Sbjct: 6 IAAMDKNRLIGRNNELPWHLPADLAHFKSITL-----GK--PIVMGRRTFDSIG---KPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P R N+V+T+ + I E I S+ AL +V +IGG +I EAL
Sbjct: 56 PHRRNIVITQQKNLII---EGCDIFYSLDDALSA------LTKEPEVIIIGGARIFKEAL 106
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVRVRS 203
P+ D + +T I E D + P + ++ +N + R+ +
Sbjct: 107 --PKADKMILTIINHSFEGDVYFPEWNDKEWKITSQIKHERDEKNPYPFQFLELRRLEN 163
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design,
folateanalogs, rossmann fold; HET: NDP MTX; 1.70A
{Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A*
1dg7_A* 1dg8_A* 2cig_A*
Length = 159
Score = 177 bits (452), Expect = 9e-54
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A IG+ G +PW+LP D F+EIT G ++MGR+TW+S+P + RPL
Sbjct: 5 IWAQATSGVIGRGGDIPWRLPEDQAHFREITM-----GH--TIVMGRRTWDSLPAKVRPL 57
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR NVVL+R F + GS+ AL + +VIGGGQ+ + AL
Sbjct: 58 PGRRNVVLSRQADFMA---SGAEVVGSLEEALTS----------PETWVIGGGQVYALAL 104
Query: 147 NAPECDAIHITEIETRI---ECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVR 200
P +TE++ + D P +D + ++ + + +RY L +Y R
Sbjct: 105 --PYATRCEVTEVDIGLPREAGDALAPVLDET-WRGETGEWRFSRSGLRYRLYSYHR 158
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A
{Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A*
3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A*
3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Length = 165
Score = 175 bits (446), Expect = 8e-53
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 23/176 (13%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T G +IMGRK +E+I RPL
Sbjct: 9 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-----GH--PLIMGRKNYEAIG---RPL 58
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + + E + S+ EL C + E++F+ GG QI L
Sbjct: 59 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIYDLFL 109
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVR 200
P D ++IT+I E DTF P +D + ++ + + +N Y Y +
Sbjct: 110 --PYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK 163
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold,
adenine nucleotide BIN domain, antibiotic resistance,
methotrexate resistance; HET: MTX NAP; 1.50A
{Escherichia coli} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A*
1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A*
1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A*
1rd7_A* 1re7_A* ...
Length = 159
Score = 174 bits (443), Expect = 2e-52
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A D IG + +PW LP+DL +FK T K VIMGR TWESI RPL
Sbjct: 5 IAALAVDRVIGMENAMPWNLPADLAWFKRNTL-----NK--PVIMGRHTWESIG---RPL 54
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N++L+ D + V S+ A+ C + ++ VIGGG++ + L
Sbjct: 55 PGRKNIILSSQPGTD----DRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQFL 104
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVR 200
P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 105 --PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon
metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB:
2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X*
3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X*
3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Length = 159
Score = 172 bits (439), Expect = 7e-52
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA IG + +LPW LP+DLK K+++ G ++MGRKT+ESI +PL
Sbjct: 6 LVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-----GH--TLVMGRKTFESIG---KPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P R NVVLT SF++ E V + SI +L VF+ GG + E +
Sbjct: 56 PNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQL---------PGHVFIFGGQTLFEEMI 103
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVRVR 202
+ D ++IT IE + DTF P ++ S + +N I + +R +
Sbjct: 104 --DKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK 159
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme;
2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A
2jyb_A
Length = 162
Score = 170 bits (432), Expect = 8e-51
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V A + IG+DG+LPW +P+D K ++ V++GR T+ES+
Sbjct: 6 VAALAENRVIGRDGELPWPSIPADKKQYRSRIA-----DD--PVVLGRTTFESMR---DD 55
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LPG +V++RS +V+ S+ A+++ A+ E +VIGG I +
Sbjct: 56 LPGSAQIVMSRSERS--FSVDTAHRAASVEEAVDIAASLD----AETAYVIGGAAIYALF 109
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSA 204
P D + ++ + E DT+ P D++ ++ ++ + L +VR S+
Sbjct: 110 Q--PHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDAE-----TDHEGFTLQEWVRSASS 161
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha
helices, oxidoreductase; HET: NDP MTX; 1.95A
{Streptococcus pneumoniae}
Length = 190
Score = 170 bits (433), Expect = 1e-50
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A + IGKD +LPW LP++L+ FKE T A++MGR T++ + R L
Sbjct: 28 IWAQDEEGVIGKDNRLPWYLPAELQHFKETTL-----NH--AILMGRVTFDGMG--RRLL 78
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P R ++LTR+ I + V + S L+ +A + ++++GG QI
Sbjct: 79 PKRETLILTRNPEEKI---DGVATFHDVQSVLDWYSAQE-----KNLYIVGGKQIFQAFE 130
Query: 147 NAPECDAIHITEIETRIECDTFIPS-IDSSVFQPWYSSFPIV--ENNIRYCLSTYVR 200
P D + +T I R+E DT+ P+ D S+F+ S F +N + + R
Sbjct: 131 --PYLDEVIVTHIHARVEGDTYFPAEFDLSLFETVSSKFYTKDEKNPYDFTIQYRKR 185
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH,
oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage
T4} SCOP: c.71.1.1
Length = 193
Score = 144 bits (365), Expect = 9e-41
Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 34/193 (17%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V ++ G LPW ++ DL+ FK T+ G +IMG KT++S+P
Sbjct: 13 TVDGFNELAFGLGDGLPWGRVKKDLQNFKARTE-----GT--IMIMGAKTFQSLP---TL 62
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSI--------------E 131
LPGR ++V+ T + + I + S + +
Sbjct: 63 LPGRSHIVVCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNS 122
Query: 132 KVFVIGGGQILSEALNAPECDAIHITEIETR------IECDTFIPSIDSSVFQPWYSSFP 185
KV VIGG +L AL P D + ++ I R ++ D D S + + +
Sbjct: 123 KVSVIGGPALLYAAL--PYADEVVVSRIVKRHRVNSTVQLDASFL-DDISKREMVETHWY 179
Query: 186 IVENNIRYCLSTY 198
++ S Y
Sbjct: 180 KIDEVTTLTESVY 192
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase;
2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Length = 168
Score = 141 bits (359), Expect = 4e-40
Identities = 47/180 (26%), Positives = 65/180 (36%), Gaps = 18/180 (10%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V+A I W D K F++IT + V+MGR T+E I RP
Sbjct: 5 FVLAMDVSGKIASSV-ESWSSFEDRKNFRKITT------EIGNVVMGRITFEEIG---RP 54
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LP RLNVVLTR V GS ++ L Y E+V VIGG + +E
Sbjct: 55 LPERLNVVLTRRPKTSNNPSL-VFFNGSPADVVKFLEGKGY----ERVAVIGGKTVFTEF 109
Query: 146 LNAPECDAIHITEIETRI-ECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSA 204
L D + +T + F + + E + Y +S
Sbjct: 110 LREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGTLF--LKYSVEKSH 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 1e-09
Identities = 78/486 (16%), Positives = 145/486 (29%), Gaps = 150/486 (30%)
Query: 106 ENVVICGSIGSALELLAASPYCLSIE-------KVFVIGGGQILSEALNAPECDAIHITE 158
+NV+I G +GS +A CLS + K+F + N+PE + +
Sbjct: 151 KNVLIDGVLGSGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNC-----NSPETVLEMLQK 204
Query: 159 IETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLD 218
+ +I+ + + D S S+ + ++I+ L ++ + L +VL
Sbjct: 205 LLYQIDPN-WTSRSDHS------SNIKLRIHSIQAELRRLLKSKPYE-NCL-----LVLL 251
Query: 219 SKTN-SDKFEVKQFSFLPKM--------VFEKHEEYLYLRLVQDIISDGNLKDDRTGTGT 269
N + F+ K+ V + + D S D+
Sbjct: 252 ---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSL 306
Query: 270 LSKF-GCQMRYNLR----TTFPLL-------------TTKKVFWRGV-VEELLWFISGST 310
L K+ C+ + +L TT P T W+ V ++L I S
Sbjct: 307 LLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSL 363
Query: 311 NA---KVLQE---------KDIHI--------WDGNASREYLDSV------GLTDREEGD 344
N ++ HI W + + V L ++
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---- 419
Query: 345 LGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPN-DRRIV-----LSAWNP 398
Q + + + L++ K++N R IV ++
Sbjct: 420 -------QPKES--TIS-IP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 399 SDLKLMALPPC-----------HMFAQRSADMGLGVPFNIASYALLTCMIAHVCDL--AP 445
DL +PP H+ + + L I H A
Sbjct: 462 DDL----IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 446 GDFIHVIGDAHVYRNHVR---PLEEQLQK-----LPKPFPILKINPEKKDI--------D 489
G ++ + Y+ ++ P E+L LPK L + D+ D
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLRIALMAED 576
Query: 490 SFVAED 495
+ E+
Sbjct: 577 EAIFEE 582
Score = 46.8 bits (110), Expect = 2e-05
Identities = 64/405 (15%), Positives = 105/405 (25%), Gaps = 160/405 (39%)
Query: 211 QNNDIVLDSKTNSDKFEVKQFSF-----LPKMVFEKHEEYLYLRLVQDIISDGNLKDDRT 265
Q DI+ D F V F +PK + K E + II KD +
Sbjct: 17 QYKDILSV---FEDAF-VDNFDCKDVQDMPKSILSKEE-------IDHII---MSKDAVS 62
Query: 266 GTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL-----WF---ISGSTNAKVLQE 317
GT L F + + F VEE+L + I +
Sbjct: 63 GTLRL--FWTLLSKQEEMV-------QKF----VEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 318 K-----------DIHIW-DGNASRE----YLDSVGLTDREEGDLGPVYG----------- 350
+ D ++ N SR L L R ++ + G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVAL 168
Query: 351 -------------FQ--WRHFGARYT---------NMHADYSGQGFDQLLDVINKIKNNP 386
F+ W + + + + D + IK
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRI 227
Query: 387 ND-----RR-----------IVLS-AWNPSDLKLMALPPCHMFAQRSADMGLGVPFNIAS 429
+ RR +VL N FN++
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---------------------AFNLSC 266
Query: 430 YALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP--------------LEEQLQKLPKP 475
LLT V DF+ H+ +H L+ + Q LP+
Sbjct: 267 KILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR- 320
Query: 476 FPILKINP-------EKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
+L NP E +++K + D I ++ ++
Sbjct: 321 -EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSL 363
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center
for structural genomics, JCSG, protein structu
initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Length = 178
Score = 51.5 bits (124), Expect = 6e-08
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 15/127 (11%)
Query: 37 GKDGKLPW--KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI----PLEHRPLPGRL 90
G + W K + ++ S VIMGR T+E + E R
Sbjct: 20 DDQGAVDWLEKNVHGTESDDSYEKMYSKID---TVIMGRTTYEQVTQKLSPEKYVYADRQ 76
Query: 91 NVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPE 150
++T D ++ S ++ + + V+++GG +I+ + A
Sbjct: 77 TYIVTSHLGEDTDKIK--YWKQSPVELVKRIQKEKG----KDVWIVGGAKIIDPLVQANL 130
Query: 151 CDAIHIT 157
D +T
Sbjct: 131 IDTYILT 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 74/478 (15%), Positives = 150/478 (31%), Gaps = 142/478 (29%)
Query: 57 TQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGS 116
+ + K +I + + + RP + N L R+ A + V I G G+
Sbjct: 110 QENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGN 165
Query: 117 AL----EL--LAASPYCLSIEKVFVIGGGQILSEALNAPECDAI--HITEIETRIECDTF 168
EL L + Y + + + + + + + I +E +
Sbjct: 166 TDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 169 IPSIDSSVFQPWYSSFPIVENNI------RYCLS------TYVRVRSAAVESLSQNNDIV 216
P D + P S P+ I Y ++ T +RS + + +V
Sbjct: 225 TPDKDYLLSIP--ISCPL----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 217 ---LDSKTNS-DKFEVKQFSFLPKMVF----EKHEEY----LYLRLVQDIISDGNLKDDR 264
++T+S + F V + ++F +E Y L +++D + +
Sbjct: 279 TAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE----- 332
Query: 265 TGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGV-VEELLWFISGSTNAKVLQEKDIHIW 323
G S P+L+ + + E++ +++ TN+ + K + I
Sbjct: 333 ---GVPS--------------PMLS---I--SNLTQEQVQDYVN-KTNSHLPAGKQVEIS 369
Query: 324 DGNASREYLDSVGLTDREEGDLGPV---YGF--------------QWR--------HFGA 358
N ++ V ++ GP YG Q R F
Sbjct: 370 LVNGAKNL---V-VS-------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 359 RYTNM----HADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMF-- 412
R+ + H+ L+ + I + + ++N D+++ P F
Sbjct: 419 RFLPVASPFHSHL-------LVPASDLINKDLVKNNV---SFNAKDIQI---PVYDTFDG 465
Query: 413 ----------AQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRN 460
++R D + +P H+ D PG +G +RN
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWE--TTTQFKATHILDFGPGG-ASGLGVL-THRN 519
Score = 42.0 bits (98), Expect = 6e-04
Identities = 32/207 (15%), Positives = 58/207 (28%), Gaps = 74/207 (35%)
Query: 300 EELLWFISGSTNAKVLQEKDIH--------IWDGNAS------REYLDSVGLTDR----- 340
+++L L+ DIH D + Y+ + + R
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 341 EEGDLGPVYGFQWRHFGARYTNMHADYSGQG-----FDQLLD------------------ 377
L +R G + A + GQG F++L D
Sbjct: 141 SNSAL-------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 378 VINKIKNNPNDRRIVLS------AW--NPSDLKLMALPPCHMFAQRSADMGLGVPFN--- 426
++++ D V + W NPS+ P S + P
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSN-----TPDKDYLL--SI--PISCPLIGVI 244
Query: 427 -IASYALLTCMIAHVCDLAPGDFIHVI 452
+A Y ++T + PG+ +
Sbjct: 245 QLAHY-VVTA---KLLGFTPGELRSYL 267
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A
{Mycobacterium smegmatis}
Length = 178
Score = 46.2 bits (110), Expect = 4e-06
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)
Query: 37 GKDGKLPW--KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVL 94
++ L W Q G ++MG T+E + + VL
Sbjct: 20 DENQSLDWLTSRDITPDGPFGYEQFIETIG---VLVMGASTYEWVVEHGDWSYDQPAWVL 76
Query: 95 TRSGSFDIATVENVVICGSIGSAL-ELLAASPYCLSIEKVFVIGGGQILSEALNAPECDA 153
T + V G + EL+AA+ + V+V+GGG + ++ + A D
Sbjct: 77 THRPEIAAESHPMQVFSGDVAELHPELVAAAGG----KDVWVVGGGDVAAQFVAADLIDE 132
Query: 154 IHIT 157
I ++
Sbjct: 133 IIVS 136
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Length = 197
Score = 44.7 bits (106), Expect = 2e-05
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 13/126 (10%)
Query: 37 GKDGKLPW--KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNV-V 93
K GKL W +P+ + ++MGR T + + P V V
Sbjct: 36 DKRGKLDWLHSVPNPNNVDTGFVALMERVD---GLVMGRNTLDMVLSFDCDWPYSKPVFV 92
Query: 94 LTRSGSFDIATVEN--VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPEC 151
L+ + + E+ ++ G + + L A + I GG + L
Sbjct: 93 LSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAKGF-----NELYIDGGVTIQNFLKEDLI 147
Query: 152 DAIHIT 157
D + IT
Sbjct: 148 DEMVIT 153
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Length = 189
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 25/134 (18%)
Query: 37 GKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI---------PLEHRPLP 87
GK+G++ W + F + D ++ GRK+++ P + L
Sbjct: 25 GKNGEVDWCIMDPDMGFTDFLN-QIDT-----ILYGRKSFDLWGQYIPKNEDPDTEKELW 78
Query: 88 GRLN----VVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILS 143
++ V +R+ + I +I + L +P + +++ GG +++
Sbjct: 79 KLVHSKKKYVFSRTQNEIDNQAI--FINDNILEEVNKLKKNPG----KDIWLYGGASLIT 132
Query: 144 EALNAPECDAIHIT 157
+N D ++
Sbjct: 133 TFINLGLVDEFRLS 146
>3kgy_A Bifunctional deaminase-reductase domain protein; putative
dihydrofolate reductase, structural genomics; HET: MSE
NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Length = 231
Score = 38.8 bits (90), Expect = 0.002
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 68 AVIMGRKTWESIPLE--HRPLPGRLNVVLTRSGSFDIATVEN---VVICGSIGSALELLA 122
A IMG++ +E VLT + AL L
Sbjct: 98 AHIMGKRMFEGGERGWPEEAPFHTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAR 157
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHIT 157
+ I + GG ++ + LN D + I
Sbjct: 158 EAAGERDI---RISGGANVIQQYLNLGLVDELEIA 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.016
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 459 RNHVRPLEEQLQKL--PKPFPILKIN 482
+ ++ L+ L KL P L I
Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIK 43
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide,
sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Length = 217
Score = 30.2 bits (67), Expect = 1.5
Identities = 11/78 (14%), Positives = 17/78 (21%), Gaps = 2/78 (2%)
Query: 345 LGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLM 404
+G + G H LL+ + W P DL+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASGRAALTHLLEAARDWHEA-LPEFRAFATW-PEDLRWA 58
Query: 405 ALPPCHMFAQRSADMGLG 422
P + G
Sbjct: 59 DRPAHALPVIDHLTRDPG 76
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane
interactions, toxin structure, voltage-gated channel,
membrane protein; 2.50A {Escherichia coli}
Length = 191
Score = 29.7 bits (66), Expect = 1.9
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 355 HFGARYTNMHADYSGQ-------GFDQLLDVINKIKNNPN------DRRIVLSAWNPSDL 401
+G +Y+ M + + + ++ L K K+ N DR + +A
Sbjct: 31 KYGEKYSKMAQELADKSKGKKIGNVNEALAAFEKYKDVLNKKFSKADRDAIFNALASVKY 90
Query: 402 KLMA 405
A
Sbjct: 91 DDWA 94
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 29.4 bits (66), Expect = 2.2
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 253 DIISDGNLKDDRTGTGTLSKF-GCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
I++DG +DDR + S+ +MR N++ PL+ R + E
Sbjct: 103 SILADGTRRDDRVPKLSYSEIQSLEMRKNIQYITPLMGFGYKTLRHLASEFF 154
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 4.7
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 12/31 (38%)
Query: 338 TDREEGDL-----GPV-------YGFQWRHF 356
EGD+ G V +WR F
Sbjct: 36 ERFSEGDVVCALCGLVLSDKLVDTRSEWRTF 66
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 28.6 bits (64), Expect = 5.2
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 406 LPPCHMFAQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGD 454
L PC+ ++ S G P +Y ++ V + P ++H+ GD
Sbjct: 252 LTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGD 300
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein
structure initiative, structural GEN pathogenic protozoa
consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB:
3bwb_A*
Length = 304
Score = 28.5 bits (64), Expect = 5.3
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 119 ELLAASPYCL--SIEKVFVIGGGQ--ILSEALNAPECDAIHITEIETRI--ECDTFIPSI 172
E+L + C E+V +IGGG +L E L + + +I+ + + P I
Sbjct: 83 EVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQI 142
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural
genomic NPPSFA, national project on protein structural
and function analyses; HET: FLC; 2.05A {Pyrococcus
horikoshii}
Length = 159
Score = 27.6 bits (62), Expect = 5.9
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 66 RNAVIMGRK-TWESIPLEHRPLP 87
+ A I+ K T E IPL H P+P
Sbjct: 59 QIAGILAVKRTPELIPLCH-PIP 80
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta,
biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Length = 151
Score = 27.6 bits (62), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 66 RNAVIMGRK-TWESIPLEHRPLP 87
+ A I+ K T E IP+ H P+P
Sbjct: 50 KTAGILAAKKTPELIPMCH-PIP 71
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP:
f.1.1.1
Length = 204
Score = 27.8 bits (61), Expect = 7.3
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 355 HFGARYTNMHADYSGQ----------GFDQLLDVINKIKNNPN------DRRIVLSAWNP 398
H G +Y + D + FD + +NKI NP DR +++AW
Sbjct: 29 HLGDKYKAIAKDIADNIKNFQGKTIRSFDDAMASLNKITANPAMKINKADRDALVNAWKH 88
Query: 399 SDLKLMA 405
D + MA
Sbjct: 89 VDAQDMA 95
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 28.2 bits (63), Expect = 7.5
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 424 PFNIAS---YALLTCMIAHVCDLAPGDFIHVIGD 454
P N Y+ LT + ++ P FIH+ GD
Sbjct: 272 PINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGD 305
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 28.2 bits (63), Expect = 8.3
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 422 GVPFNI------ASYALLTCMIAHVCDLAPGDFIHVIGD 454
V F+ +Y + +I + L PG ++H+ GD
Sbjct: 281 KVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGD 319
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum
cofactor (MOCO), MOCO biosynthesis, structu genomics,
NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A
3jqk_A 3jqm_A*
Length = 157
Score = 27.1 bits (61), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 66 RNAVIMGRK-TWESIPLEHRPLP 87
+ A I+ K T + IPL H PLP
Sbjct: 57 QLAGILAAKKTADLIPLCH-PLP 78
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase,
rossmann fold, polyamine biosynthesis, spermidine
biosynthesis, transferase; 2.90A {Escherichia coli} PDB:
3o4f_A
Length = 294
Score = 27.6 bits (62), Expect = 8.7
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 129 SIEKVFVIGGGQ--ILSEALNAPECDAIHITEIETR-IE-CDTFIPSIDSSVFQ 178
+ V +IGGG +L E ++I + EI+ + C ++P+ ++ +
Sbjct: 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYD 136
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1);
DNA adenine methyltransferase, methylase; HET: SAM;
1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Length = 284
Score = 27.7 bits (62), Expect = 8.8
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 273 FGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322
F R N + F + + + V EEL+ IS + + I
Sbjct: 129 FNGLYRVNSKNQFNVPYGRYKNPKIVDEELISAIS-----VYINNNQLEI 173
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis,
structural genomics; 1.94A {Geobacillus kaustophilus}
Length = 162
Score = 27.1 bits (61), Expect = 9.0
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 66 RNAVIMG-RKTWESIPLEHRPLP 87
+ A +M +KT + IP+ H PL
Sbjct: 59 QVAGVMAAKKTADLIPMCH-PLM 80
>2d7v_A Hypothetical protein VCA0330; MCSG, structural genomics,
hypothetial PROT protein structure initiative; 1.97A
{Vibrio cholerae o1 biovar eltor} SCOP: d.227.1.1
Length = 162
Score = 27.4 bits (60), Expect = 9.2
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 6/115 (5%)
Query: 359 RYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQRSAD 418
+Y+ H G L + P + +P + + AL CHM S
Sbjct: 29 QYSRAHTWEFDGGSKILASASPHVVPVPLSVE---ANVDPEEAFVAALSSCHMLVFLSIA 85
Query: 419 MGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHV-YRNHVRPLEEQLQKL 472
+ SY I V+ V + +P +QL+K+
Sbjct: 86 AKQRYL--VESYTDNAVGILGKNSKGKTSVTKVVLRPQVVFSGTSKPTLQQLEKM 138
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum
cofactor (MOCO), MOCO biosynthesis, MOCO DE
translation; 2.00A {Escherichia coli} SCOP: d.58.21.1
PDB: 1eks_A*
Length = 161
Score = 27.1 bits (61), Expect = 9.6
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 66 RNAVIMGRK-TWESIPLEHRPLP 87
R A I K TW+ IPL H PL
Sbjct: 59 RIAGIQAAKRTWDLIPLCH-PLM 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,034,083
Number of extensions: 495121
Number of successful extensions: 1325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 74
Length of query: 513
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 415
Effective length of database: 3,965,535
Effective search space: 1645697025
Effective search space used: 1645697025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)