RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010303
(513 letters)
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 328 bits (843), Expect = e-110
Identities = 158/309 (51%), Positives = 205/309 (66%), Gaps = 14/309 (4%)
Query: 218 DSKTNSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQM 277
+ N + F + ++ H EY YL ++ DI+ +GN + DRTG G LSKFG M
Sbjct: 17 KEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIM 76
Query: 278 RYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGL 337
+++L FPLLTTKK+F RG++EELLWFI G TN L K++ IW+ N +RE+LD+ L
Sbjct: 77 KFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKL 136
Query: 338 TDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWN 397
RE DLGP+YGFQWRHFGA YTNM+ +Y +G DQL ++IN IKN+P RRI+L AWN
Sbjct: 137 FHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWN 196
Query: 398 PSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDL 443
DL MALPPCH+ QRS D+GLGVPFNIASY++ T MIA VC+L
Sbjct: 197 VKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNL 256
Query: 444 APGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDP 503
P FIHV+G+AHVY NH+ L+ QL ++P PFP LK+NP+ K+I+ F DF + Y
Sbjct: 257 QPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVH 316
Query: 504 HQKIEMKMA 512
H+KI M MA
Sbjct: 317 HEKISMDMA 325
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 324 bits (832), Expect = e-109
Identities = 149/288 (51%), Positives = 194/288 (67%), Gaps = 15/288 (5%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300
+H E+ YL L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKV R + E
Sbjct: 2 EHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFE 61
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARY 360
EL+WFI G TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y
Sbjct: 62 ELIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEY 121
Query: 361 TNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA------- 413
MH DY+G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +
Sbjct: 122 KTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTND 181
Query: 414 --------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 465
QRS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L
Sbjct: 182 NCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQL 241
Query: 466 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
+EQL + P+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 242 KEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 289
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 318 bits (817), Expect = e-107
Identities = 173/294 (58%), Positives = 216/294 (73%), Gaps = 22/294 (7%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFG-CQMRYNLRT-TFPLLTTKKVFWRGVV 299
EE YL LVQ II+ G + DRTGTGTLS F ++++LR TFPLLTTK+VF RGV+
Sbjct: 2 AEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVI 61
Query: 300 EELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGAR 359
EELLWFI G T++ L+EK+IHIWD N SREYLDS+GLT R+EGDLGP+YGFQWRHFGA
Sbjct: 62 EELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAE 121
Query: 360 YTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ----- 414
Y + +Y GQG DQL ++I KI+ +P DRR++LSAWNP+DL+ MALPPCHMF Q
Sbjct: 122 YIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHI 181
Query: 415 ---------------RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYR 459
RS DMGLGVPFNIASYALLTCMIAHVCDL PGDFIHV+GD H+Y+
Sbjct: 182 PSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYK 241
Query: 460 NHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
+H+ L++QL + P+PFP L +N DI+ F +DF + Y P++ I+MKM++
Sbjct: 242 DHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 295
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 317 bits (813), Expect = e-106
Identities = 181/287 (63%), Positives = 213/287 (74%), Gaps = 14/287 (4%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+E
Sbjct: 2 PHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLE 61
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARY 360
ELLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 62 ELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEY 121
Query: 361 TNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA------- 413
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH
Sbjct: 122 RDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNS 181
Query: 414 -------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 466
QRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 182 ELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLK 241
Query: 467 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 242 IQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 309 bits (793), Expect = e-103
Identities = 129/315 (40%), Positives = 173/315 (54%), Gaps = 46/315 (14%)
Query: 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
E YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 304 WFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLG----------------- 346
WF+ G TN + L + HIWD A +++ S + D G
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 347 --------------PVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIV 392
YG +G+++ H G DQL DVI +IK +P R ++
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSK-GDTIDQLGDVIEQIKTHPYSRALI 181
Query: 393 LSAWNPSDLKLMALPPCHMFA--------------QRSADMGLGVPFNIASYALLTCMIA 438
+SAWNP D+ MALPPCH QRSAD+ LGVPFNIASYALLT ++A
Sbjct: 182 VSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVA 241
Query: 439 HVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKL 498
H C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +D KL
Sbjct: 242 HECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKL 301
Query: 499 IGYDPHQKIEMKMAV 513
+ YDP+ I+ +AV
Sbjct: 302 LNYDPYPAIKAPVAV 316
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 279 bits (715), Expect = 5e-92
Identities = 126/281 (44%), Positives = 167/281 (59%), Gaps = 34/281 (12%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD A E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWDEWA------------DENGDLGPVYGKQWRAWPT-------- 103
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ------------ 414
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F Q
Sbjct: 104 PDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 415 --RSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 472
RS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 473 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 257 bits (657), Expect = 4e-83
Identities = 119/296 (40%), Positives = 164/296 (55%), Gaps = 42/296 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
Y L++DI +G DDRTGTGT++ FG ++R++L FP +TTKK+ W+ + EL+WF+
Sbjct: 4 YQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNAS---REYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNM 363
SGSTN L+ + Y + G+LGP+YG QWR FG
Sbjct: 64 SGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFG------ 117
Query: 364 HADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFA---------- 413
G DQ+++VI++IK PNDRR ++SAWNP++LK MALPPCHMF
Sbjct: 118 -------GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLD 170
Query: 414 ----QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 469
QRS D+ LG+PFNIASYA L ++A +C+L PGD I G+ H+Y NHV +E L
Sbjct: 171 LQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEIL 230
Query: 470 QKLPKPFPILKIN------------PEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
++ PK L I+ + K + +DF L Y H I+ KMAV
Sbjct: 231 RREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 240 bits (613), Expect = 1e-76
Identities = 94/297 (31%), Positives = 137/297 (46%), Gaps = 45/297 (15%)
Query: 242 HEEYLYLRLVQDIISDGNLKD----------DRTGTGTLSKFGCQMRYNLRTTFPLLTTK 291
+ Y +++DII++G + D T TLS QMR++ P+LTTK
Sbjct: 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSE-VPILTTK 60
Query: 292 KVFWRGVVEELLWFISGSTN-AKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYG 350
KV W+ ++ELLW +N L +HIWD +
Sbjct: 61 KVAWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDG------------------- 101
Query: 351 FQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCH 410
+G + + +G+ DQ+ +++++KNNP+ RR + WNP +L MAL PC
Sbjct: 102 TIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCV 161
Query: 411 MFA--------------QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 456
RS DM LG PFN+ Y +L MIA V G++I IGD H
Sbjct: 162 YETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCH 221
Query: 457 VYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 513
VY H+ L+ Q+++ P L INPE KD F +DFKLI Y K+ ++AV
Sbjct: 222 VYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 194 bits (493), Expect = 2e-59
Identities = 46/273 (16%), Positives = 81/273 (29%), Gaps = 66/273 (24%)
Query: 235 PKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVF 294
M E+ +L L + + + D+TG T+ G + F L +
Sbjct: 4 DSMTVEEIRLHLGL-----ALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEY-- 56
Query: 295 WRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWR 354
+ EL W+ S S K + + IW A +G++ YG+
Sbjct: 57 ---IQRELEWYKSKSLFVKDIPGETPKIWQQVA------------SSKGEINSNYGWAI- 100
Query: 355 HFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS-----DLKLMALPPC 409
+S + Q + ++ NP+ RR ++ PS + M+ C
Sbjct: 101 ------------WSEDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMC 148
Query: 410 HMFA--------------QRSADMGLGVPFNIASYALLTCMIAHVC-------DLAPGDF 448
RS D+ G + A + + G
Sbjct: 149 TNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSI 208
Query: 449 IHVIGDAHVYRNHVRPLEEQL-----QKLPKPF 476
I +G HVY H ++ K +
Sbjct: 209 IWNVGSLHVYSRHFYLVDHWWKTGETHISKKDY 241
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 155 bits (392), Expect = 3e-45
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 8/185 (4%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP 80
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61
Query: 81 LEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQ 140
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG
Sbjct: 62 EKNRPLKGRINLVLSRELKEPP--QGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 119
Query: 141 ILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ-----PWYSSFPIVENNIRYCL 195
+ EA+N P + +T I E DTF P ID ++ P S E I+Y
Sbjct: 120 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STYVR 200
Y +
Sbjct: 180 EVYEK 184
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 178
Score = 148 bits (373), Expect = 9e-43
Identities = 67/178 (37%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
VV A+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI RP
Sbjct: 7 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 64
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
L R+ VV++ S D A VV + + SIE +FV GG I +A
Sbjct: 65 LKNRIIVVISSSLPQDEADPNVVVFRNLE----DSIENLMNDDSIENIFVCGGESIYRDA 120
Query: 146 LNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVR 202
L D I++T + IE DT+ P I + F P Y S NI Y + +
Sbjct: 121 LKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIFEKQE 177
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
Length = 206
Score = 148 bits (373), Expect = 2e-42
Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 19 NPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT---QITSDAGKRNAVIMGRKT 75
N ++S ++VA T GIG+ LPWKL ++ +FK +T N V+MGRKT
Sbjct: 2 NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKT 61
Query: 76 WESIPLEHRPLPGRLNVVLTRSGSFDIAT-VENVVICGSIGSALELLAASPYCLSIEKVF 134
WESIPL+ RPL GR+NVV+TR+ S D+ + + L S + I ++F
Sbjct: 62 WESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIF 121
Query: 135 VIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSID-----------------SSVF 177
VIGG Q+ A++ P+ D I T I I CD F P S
Sbjct: 122 VIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWV 181
Query: 178 QPWYSSFPIVENNIRYCLSTYVR 200
I E+ Y + R
Sbjct: 182 GTKVPHGKINEDGFDYEFEMWTR 204
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 192
Score = 141 bits (356), Expect = 4e-40
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
+V A +GIG GK+PW+L ++++FK++T T+ RNAVIMGRKTWESIP + RP
Sbjct: 9 IVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRP 68
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LP RLN++L+RS +I + ++ +E+VF+IGG +I +E
Sbjct: 69 LPDRLNIILSRSYENEIIDDNIIHASSI-------ESSLNLVSDVERVFIIGGAEIYNEL 121
Query: 146 LNAPECDAIHITEIETR----IECDTFIPSIDSSVFQPWYSSF------------PIVEN 189
+N + ITEIE IE DTF+ + S I E
Sbjct: 122 INNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESWTKQPKSELQKFVGDTVLEDDIKEG 180
Query: 190 NIRYCLSTYVR 200
+ Y + + R
Sbjct: 181 DFTYNYTLWTR 191
>d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 231
Score = 142 bits (358), Expect = 6e-40
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 34/198 (17%)
Query: 35 GIGKDGKLPWK-LPSDLKFFKEITQITSD----------------------------AGK 65
G+G G LPWK + D+K+F+ +T ++
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 66 RNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASP 125
+N V+MGR WESIP + +PL R+NV+L+R+ + E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKED-FDEDVYIINKVEDLIVLL---- 153
Query: 126 YCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFP 185
L+ K F++GG + E L I+ T I + ECD F P I+ + +Q S
Sbjct: 154 GKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDV 213
Query: 186 IVENNIRYCLSTYVRVRS 203
NN Y + +
Sbjct: 214 YTSNNTTLDFIIYKKTNN 231
>d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 159
Score = 133 bits (336), Expect = 1e-37
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A IG+ G +PW+LP D F+EIT + ++MGR+TW+S+P + RPL
Sbjct: 5 IWAQATSGVIGRGGDIPWRLPEDQAHFREIT-------MGHTIVMGRRTWDSLPAKVRPL 57
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR NVVL+R F + GS+ AL + +VIGGGQ+ + AL
Sbjct: 58 PGRRNVVLSRQADFMA---SGAEVVGSLEEALT----------SPETWVIGGGQVYALAL 104
Query: 147 NAPECDAIHITEIET---RIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVR 200
P +TE++ R D P +D + ++ + + +RY L +Y R
Sbjct: 105 --PYATRCEVTEVDIGLPREAGDALAPVLDET-WRGETGEWRFSRSGLRYRLYSYHR 158
>d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Bacteriophage T4 [TaxId: 10665]}
Length = 193
Score = 129 bits (325), Expect = 1e-35
Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 29/179 (16%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V ++ G LPW ++ DL+ FK T + +IMG KT++S+
Sbjct: 13 TVDGFNELAFGLGDGLPWGRVKKDLQNFKART-------EGTIMIMGAKTFQSL---PTL 62
Query: 86 LPGRLNVVLTRS--GSFDIATVENVVICGSIGSALELLAASPYCLSI------------E 131
LPGR ++V+ + + + ++ +S
Sbjct: 63 LPGRSHIVVCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNS 122
Query: 132 KVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENN 190
KV VIGG +L AL P D + ++ I R ++ + S F S +VE +
Sbjct: 123 KVSVIGGPALLYAAL--PYADEVVVSRIVKRHRVNSTVQLDAS--FLDDISKREMVETH 177
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Escherichia coli [TaxId: 562]}
Length = 159
Score = 124 bits (313), Expect = 2e-34
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+DL +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LPGR N++L+ D + A C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVTWVK----------SVDEAIAACGDVPEIMVIGGGRVYEQF 103
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Haloferax volcanii [TaxId: 2246]}
Length = 157
Score = 116 bits (291), Expect = 3e-31
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V A + IG+DG+LPW +P+D K ++ + V++GR T+ES+
Sbjct: 5 VAALAENRVIGRDGELPWPSIPADKKQYRSRIA-------DDPVVLGRTTFESM---RDD 54
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LPG +V++RS + S+ A+++ A+ +VIGG I +
Sbjct: 55 LPGSAQIVMSRSERSFSV--DTAHRAASVEEAVDIAASLDAE----TAYVIGGAAIYALF 108
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVR 200
P D + ++ + E DT+ P D++ ++ ++ + L +VR
Sbjct: 109 Q--PHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDAE-----TDHEGFTLQEWVR 156
>d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Lactobacillus casei [TaxId: 1582]}
Length = 162
Score = 114 bits (287), Expect = 1e-30
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A R+ IGKDG LPW LP DL +F+ T +++GR+T+ES P RPL
Sbjct: 4 LWAQNRNGLIGKDGHLPWHLPDDLHYFRAQT-------VGKIMVVGRRTYESFP--KRPL 54
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P R NVVLT + V + + A +++ + GG QI +
Sbjct: 55 PERTNVVLTHQEDYQAQGAVVVHD-------VAAVFAYAKQHLDQELVIAGGAQIFTAFK 107
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENN-IRYCLSTYVR 200
+ D + +T + E DT + ++ F S N + + + +
Sbjct: 108 --DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQK 160
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Thermotoga maritima [TaxId: 2336]}
Length = 164
Score = 78.4 bits (192), Expect = 1e-17
Identities = 42/166 (25%), Positives = 57/166 (34%), Gaps = 16/166 (9%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
V+A I W D K F++IT V+MGR T+E I RPL
Sbjct: 6 VLAMDVSGKIASSV-ESWSSFEDRKNFRKITTEI------GNVVMGRITFEEIG---RPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P RLNVV V GS ++ L Y E+V VIGG + +E L
Sbjct: 56 PERLNVV-LTRRPKTSNNPSLVFFNGSPADVVKFLEGKGY----ERVAVIGGKTVFTEFL 110
Query: 147 NAPECDAIHITEIETRI-ECDTFIPSIDSSVFQPWYSSFPIVENNI 191
D + +T + F + + E
Sbjct: 111 REKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGT 156
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 31.1 bits (70), Expect = 0.32
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 355 HFGARYTNMHADYSGQ----------GFDQLLDVINKIKNNPN------DRRIVLSAWNP 398
+ G +Y N+ + + +++ + +NK+ NP D+ +++AW
Sbjct: 123 YLGVKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQ 182
Query: 399 SDLKLMA 405
+ K MA
Sbjct: 183 VNAKDMA 189
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 29.3 bits (66), Expect = 0.79
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 355 HFGARYTNMHADYSGQ-------GFDQLLDVINKIKNNPN------DRRIVLSAWNPSDL 401
+GA+ + + +GQ ++ L K + + N DR + +A L
Sbjct: 16 KYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKL 75
Query: 402 KLMA 405
++
Sbjct: 76 SDIS 79
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 29.5 bits (66), Expect = 0.82
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 409 CHMFAQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQ 468
+ R+A L C IA +C H+ D VY + E+
Sbjct: 161 SELIGARAA-------------RLSVCGIAAICQKRGYKTGHIAADGSVYNRYPGFKEKA 207
Query: 469 LQKLPKPFPILKINPEKKDIDSFVAEDFKLIG 500
L + + + + I AED G
Sbjct: 208 ANALKDIYGWTQTSLDDYPIKIVPAEDGSGAG 239
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C,
MoaC {Escherichia coli [TaxId: 562]}
Length = 146
Score = 28.7 bits (64), Expect = 0.94
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 66 RNAVIMGRK-TWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVIC-GSIGSALE---- 119
R A I K TW+ IPL H + ++ V L + +E + G G +E
Sbjct: 49 RIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTA 108
Query: 120 ----LLAASPYCLSIEKVFVIGGGQILS 143
L C +++K VIG ++L+
Sbjct: 109 ASVAALTIYDMCKAVQKDMVIGPVRLLA 136
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 29.0 bits (65), Expect = 1.1
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 355 HFGARYTNMHADYSGQ----------GFDQLLDVINKIKNNPN------DRRIVLSAWNP 398
+ G +Y + + + +D + INK+ NP+ D+ +++AW
Sbjct: 27 YLGDKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKA 86
Query: 399 SDLKLMA 405
+ + M
Sbjct: 87 FNAEDMG 93
>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH
{Mouse (Mus musculus), cluster 5 [TaxId: 10090]}
Length = 116
Score = 26.6 bits (58), Expect = 3.4
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 311 NAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQ 370
L+ + D + S+ +L L + R++ AR + DY GQ
Sbjct: 59 YNSALKSRLSISKDNSKSQVFLKMNSLHTDDTA----------RYYCARERDYRLDYWGQ 108
Query: 371 G 371
G
Sbjct: 109 G 109
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio
cholerae [TaxId: 666]}
Length = 155
Score = 26.6 bits (58), Expect = 5.6
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 394 SAWNPSDLKLMALPPCHMFAQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIG 453
+ +P + + AL CHM S + SY I V+
Sbjct: 55 ANVDPEEAFVAALSSCHMLVFLSIAAKQRYL--VESYTDNAVGILGKNSKGKTSVTKVVL 112
Query: 454 DAHVYRNHVRPLE-EQLQKL 472
V + +QL+K+
Sbjct: 113 RPQVVFSGTSKPTLQQLEKM 132
>d1k0ha_ b.106.1.2 (A:) Tail attachment protein gpF3 {Bacteriophage
lambda [TaxId: 10710]}
Length = 117
Score = 25.6 bits (56), Expect = 7.3
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 417 ADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 464
+ G GV +S +L V L GD + + + V P
Sbjct: 50 SYAGQGVRVEGSSPSL-FVRTDEVRQLRRGDTLTIGEENFWVDR-VSP 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,981,079
Number of extensions: 96325
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 36
Length of query: 513
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 424
Effective length of database: 1,185,626
Effective search space: 502705424
Effective search space used: 502705424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)