BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010307
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 149 MDYLSDFPVGKKLQLP---SFRDCLKERGTVQMLTMGREAAIEVQSLVSVL 196
MDYL+++P+ + LP S+R L ++G + +L + E++S ++L
Sbjct: 321 MDYLNEYPIAVNVTLPNATSYRFVLVQKGPIGVLLDAPKVNGEIRSPTNIL 371
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 224 DTINLFT----YAVLRLSPNALSSGV-NSWSYIRRGSTSSHFVSGSALTHSGPVSEQIYH 278
DT+ +F+ YA+ +P+AL+ V N++ +G S FVS GPVS ++
Sbjct: 123 DTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLP 182
Query: 279 SSDTSPVG----NNINRVTRALQHGK 300
+S +G + I++V + + K
Sbjct: 183 ASGAPQMGAAPDDAIDQVAKLIAQAK 208
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 251 IRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPV-GNNINRVTRALQHGKWYKGKDGFL 309
I S S+ G LTH V+ + H+ D P+ GN ++ T L ++ G F
Sbjct: 197 IMNSSGSTGLPKGVQLTHENIVT-RFSHARD--PIYGNQVSPGTAVLTVVPFHHGFGMF- 252
Query: 310 VTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIP-VSSILN 360
+G L+C V L + +E +L Q T ++L+P + +ILN
Sbjct: 253 ------TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 251 IRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPV-GNNINRVTRALQHGKWYKGKDGFL 309
I S S+ G LTH V+ + H+ D P+ GN ++ T L ++ G F
Sbjct: 197 IMNSSGSTGLPKGVQLTHENIVT-RFSHARD--PIYGNQVSPGTAVLTVVPFHHGFGMF- 252
Query: 310 VTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIP-VSSILN 360
+G L+C V L + +E +L Q T ++L+P + +ILN
Sbjct: 253 ------TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 251 IRRGSTSSHFVSGSALTHSGPVSEQIYHSSDTSPV-GNNINRVTRALQHGKWYKGKDGFL 309
I S S+ G LTH V+ + H+ D P+ GN ++ T L ++ G F
Sbjct: 197 IMNSSGSTGLPKGVQLTHENIVT-RFSHARD--PIYGNQVSPGTAVLTVVPFHHGFGMF- 252
Query: 310 VTDIWGVDVGSLVCATPTVWLQQTEEAMYLCPYQFKSLTLILLIP-VSSILN 360
+G L+C V L + +E +L Q T ++L+P + +ILN
Sbjct: 253 ------TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|B Chain B, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|C Chain C, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|D Chain D, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|E Chain E, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
Length = 219
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 33 ILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERH 77
+LFF+P D F VI S+ + F + AC I H
Sbjct: 60 VLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAH 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,592,214
Number of Sequences: 62578
Number of extensions: 579183
Number of successful extensions: 1107
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 7
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)