Query 010307
Match_columns 513
No_of_seqs 149 out of 204
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cue_A Transport protein parti 86.5 20 0.00069 34.1 15.1 128 14-151 5-218 (219)
2 2j3t_C Trafficking protein par 76.2 9 0.00031 34.0 8.1 92 13-121 4-106 (145)
3 2j3t_D Trafficking protein par 75.7 18 0.00062 34.4 10.5 105 40-153 102-211 (219)
4 3cue_C Transport protein parti 74.8 11 0.00036 34.1 8.3 71 42-120 37-111 (159)
5 1w63_Q Adapter-related protein 42.1 1.6E+02 0.0056 25.9 10.0 69 51-127 30-98 (158)
6 2vgl_S AP-2 complex subunit si 32.2 2.4E+02 0.0082 24.1 14.1 77 41-128 23-99 (142)
7 1ri9_A FYN-binding protein; SH 29.4 30 0.001 29.0 2.6 28 457-485 65-92 (102)
8 1pm4_A YPM; jelly roll fold, t 28.1 62 0.0021 26.4 4.1 29 456-489 15-43 (119)
9 1w1g_A HPDK1, 3-phosphoinositi 24.1 2.6E+02 0.0089 24.9 7.9 19 401-419 76-94 (151)
10 3l7h_A RE64145P, roadblock; LC 22.6 1.9E+02 0.0065 23.7 6.3 50 43-93 37-92 (97)
No 1
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=86.54 E-value=20 Score=34.09 Aligned_cols=128 Identities=12% Similarity=0.174 Sum_probs=86.0
Q ss_pred EEEEEcCCCCCCCccccCcEEEEcCC-----CCChhhhhhhhhHHHHHHHhhhccCCCc---------------------
Q 010307 14 QLCIFDLRRGQNEGQELDKILFFFPA-----DLPFSTQLSVIGLSEGLITFTRIFSPEA--------------------- 67 (513)
Q Consensus 14 ~f~Ifnp~~g~~Eg~e~~kILfY~P~-----~~~~n~ql~~IGL~egiv~Ft~~Fs~~~--------------------- 67 (513)
+|+|||-.= .++||.-. ..+.|+.+..-|+.-|+-.+++..+|..
T Consensus 5 sl~IiNk~G---------glIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~ 75 (219)
T 3cue_A 5 TILVINKSG---------GLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGM 75 (219)
T ss_dssp EEEEECTTS---------CEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC
T ss_pred EEEEEeCCC---------CEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCcccccccccccccccccccccc
Confidence 688998653 36666622 2567899999999999999999888742
Q ss_pred ------------------------------------------cceEEEecceEEEEEEecCCeEEEEEEEcCC-C-----
Q 010307 68 ------------------------------------------ACEIIEAERHSHVFYEAETDIWMVMVVEKGK-D----- 99 (513)
Q Consensus 68 ------------------------------------------~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~-~----- 99 (513)
..+.++|++.++-.++--.++.+++..+... +
T Consensus 76 ~~~~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~ 155 (219)
T 3cue_A 76 SSNRSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTI 155 (219)
T ss_dssp ----------------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC-------
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccc
Confidence 2678999999999999889999999764321 0
Q ss_pred ----------CCchhhHHHHHHHHHHHHHHHHH--hccchhHhhhcCCChhHHHHhhhHHHHHh
Q 010307 100 ----------SDAIWRIDALRKVLKEVHSLFVM--FYGSIRAMLEKDPSGGLIRSHLYPFIMDY 151 (513)
Q Consensus 100 ----------~~~~i~~~~l~~~L~~~Y~~F~L--f~Gsf~~~l~~~~~~~~L~~~L~~F~~~y 151 (513)
....+.+..++..|++.|+.|.= .--||=..-.. -.-+.+..+++.+...+
T Consensus 156 ~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~p-I~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 156 ATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMP-IRSNLFDEKVKKMVENL 218 (219)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSC-CCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-cccHHHHHHHHHHHHhc
Confidence 00123457889999999988862 11233222111 13356777777776543
No 2
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=76.24 E-value=9 Score=33.98 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCCCCccccCcEEEEcCCC------CC-hhhhhhhhhHHHHHHHhhhccCCCc---cceEEEecceEEEEE
Q 010307 13 MQLCIFDLRRGQNEGQELDKILFFFPAD------LP-FSTQLSVIGLSEGLITFTRIFSPEA---ACEIIEAERHSHVFY 82 (513)
Q Consensus 13 ~~f~Ifnp~~g~~Eg~e~~kILfY~P~~------~~-~n~ql~~IGL~egiv~Ft~~Fs~~~---~~~~I~T~k~~~v~~ 82 (513)
.+|+|+|.. +..+|+.-.. .+ .|+....-|+.-++-.+++..+|.. ..+.++|+..++-.+
T Consensus 4 ~~~~Ii~k~---------g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~ 74 (145)
T 2j3t_C 4 HNLYLFDRN---------GVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYY 74 (145)
T ss_dssp EEEEEECTT---------SCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEE
T ss_pred EEEEEEeCC---------CCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEE
Confidence 478899764 2466666221 12 5666667999999999999998753 368899999999999
Q ss_pred EecCCeEEEEEEEcCCCCCchhhHHHHHHHHHHHH-HHHH
Q 010307 83 EAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVH-SLFV 121 (513)
Q Consensus 83 e~Ep~~wm~~~v~k~~~~~~~i~~~~l~~~L~~~Y-~~F~ 121 (513)
+--.++.+++..+. + +.-++..|++.| +.|.
T Consensus 75 ~T~TgiKFvl~td~-~-------~~~i~~~l~~iy~~lYv 106 (145)
T 2j3t_C 75 ETPTGIKVVMNTDL-G-------VGPIRDVLHHIYSALYV 106 (145)
T ss_dssp ECTTSCEEEEEECT-T-------CCCCHHHHHHHHHTTHH
T ss_pred EcCCCCEEEEEecC-C-------cchHHHHHHHHHHHHHH
Confidence 99999999997532 2 122567777777 5664
No 3
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=75.71 E-value=18 Score=34.43 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=76.7
Q ss_pred CCChhhhhhhhhHHHHHHHhhhccCCCc---cceEEEecceEEEEEEecCCeEEEEEEEcCCCCCchhhHHHHHHHHHHH
Q 010307 40 DLPFSTQLSVIGLSEGLITFTRIFSPEA---ACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEV 116 (513)
Q Consensus 40 ~~~~n~ql~~IGL~egiv~Ft~~Fs~~~---~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~~~~~~i~~~~l~~~L~~~ 116 (513)
..+.|+++..-|++-++=.|++..+|.. ..+.++|++.++-.++--.++++++..+. + +..++..|++.
T Consensus 102 ~l~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~-~-------~~~ir~~l~~I 173 (219)
T 2j3t_D 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP-R-------QAGIDSLLRKI 173 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECT-T-------CCCHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecC-C-------chHHHHHHHHH
Confidence 4567899999999999999999998843 37889999999999999999999997632 1 23456777777
Q ss_pred HHHHHHh--ccchhHhhhcCCChhHHHHhhhHHHHHhhh
Q 010307 117 HSLFVMF--YGSIRAMLEKDPSGGLIRSHLYPFIMDYLS 153 (513)
Q Consensus 117 Y~~F~Lf--~Gsf~~~l~~~~~~~~L~~~L~~F~~~yl~ 153 (513)
|+.|.=+ .-||-..-.. -..+.+..+++.+...+..
T Consensus 174 yelYvd~V~kNPFY~~~~p-I~s~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 174 YEIYSDFALKNPFYSLEMP-IRCELFDQNLKLALEVAEK 211 (219)
T ss_dssp HHHHHHHHTTCTTCCTTSC-CCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCCCCCc-cchHHHHHHHHHHHHHhhc
Confidence 7776533 2344332111 2346788889888888754
No 4
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=74.79 E-value=11 Score=34.13 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=54.0
Q ss_pred ChhhhhhhhhHHHHHHHhhhccCCCc---cceEEEecceEEEEEEecCCeEEEEEEEcCCCCCchhhHHHHHHHHHHHHH
Q 010307 42 PFSTQLSVIGLSEGLITFTRIFSPEA---ACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHS 118 (513)
Q Consensus 42 ~~n~ql~~IGL~egiv~Ft~~Fs~~~---~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~~~~~~i~~~~l~~~L~~~Y~ 118 (513)
..|+....-|+.-++-.|++..+|.. ....++|++.++-.++--.++++++..+. + +.-++.+|++.|+
T Consensus 37 ~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~-~-------~~~i~~~l~~iy~ 108 (159)
T 3cue_C 37 NEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDF-K-------QQSYTQVLQYIYS 108 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCS-S-------SSCTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCC-C-------cchHHHHHHHHHH
Confidence 35677789999999999999998754 47889999999999999999999997532 1 2233555666664
Q ss_pred -HH
Q 010307 119 -LF 120 (513)
Q Consensus 119 -~F 120 (513)
.|
T Consensus 109 ~lY 111 (159)
T 3cue_C 109 HIY 111 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 44
No 5
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=42.06 E-value=1.6e+02 Score=25.88 Aligned_cols=69 Identities=12% Similarity=0.232 Sum_probs=45.8
Q ss_pred hHHHHHHHhhhccCCCccceEEEecceEEEEEEecCCeEEEEEEEcCCCCCchhhHHHHHHHHHHHHHHHHHhccch
Q 010307 51 GLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSI 127 (513)
Q Consensus 51 GL~egiv~Ft~~Fs~~~~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~~~~~~i~~~~l~~~L~~~Y~~F~Lf~Gsf 127 (513)
.+.+.+...+..= +++.|.+++.+..+.++ ....+.|+++++.+.. ..-.+...|.+..+.+.-+.|.+
T Consensus 30 ~~~~~~~~~i~~~-~~~~~~~i~~~~~~~vy-~~~~~Lyfv~~~~~~~------Nel~~le~L~~~vevl~~yf~~v 98 (158)
T 1w63_Q 30 KMVRELMQVVLAR-KPKMCSFLEWRDLKVVY-KRYASLYFCCAIEGQD------NELITLELIHRYVELLDKYFGSV 98 (158)
T ss_dssp HHHHHHHHHHHTS-CSSSCSEEEETTEEEEE-EEETTEEEEEEECSSS------CHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhcc-CCCCCCeEEECCEEEEE-EEECCEEEEEEecCCC------CHHHHHHHHHHHHHHHHHHHccC
Confidence 3445555544432 33458889998876655 6677899999874322 34466788888888888887864
No 6
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=32.20 E-value=2.4e+02 Score=24.12 Aligned_cols=77 Identities=5% Similarity=0.162 Sum_probs=49.4
Q ss_pred CChhhhhhhhhHHHHHHHhhhccCCCccceEEEecceEEEEEEecCCeEEEEEEEcCCCCCchhhHHHHHHHHHHHHHHH
Q 010307 41 LPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLF 120 (513)
Q Consensus 41 ~~~n~ql~~IGL~egiv~Ft~~Fs~~~~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~~~~~~i~~~~l~~~L~~~Y~~F 120 (513)
.+.++|.+.+. .+...... .+++.|.+++.+..+.++ ....+.|++++..+.. ..-.+...|.+..+.+
T Consensus 23 ~~~~~~~~~~~---~f~~~v~~-~~~~~~~~~~~~~~~~vy-~~~~~Lyfv~~~~~~~------N~l~~le~L~~~ve~l 91 (142)
T 2vgl_S 23 FDDDEKQKLIE---EVHAVVTV-RDAKHTNFVEFRNFKIIY-RRYAGLYFCICVDVND------NNLAYLEAIHNFVEVL 91 (142)
T ss_dssp CCHHHHHHHHH---HHHHHHHT-CCTTSCSEEEETTEEEEE-EEETTEEEEEEECTTS------CHHHHHHHHHHHHHHH
T ss_pred CChhhhHHHHH---HHHHHHhc-CCCCCCCEEEECCEEEEE-EEECCEEEEEEeCCCC------CHHHHHHHHHHHHHHH
Confidence 45556655443 33333331 233458889998776655 6667899999874321 3456688888888888
Q ss_pred HHhccchh
Q 010307 121 VMFYGSIR 128 (513)
Q Consensus 121 ~Lf~Gsf~ 128 (513)
.-+.|++.
T Consensus 92 ~~yf~~v~ 99 (142)
T 2vgl_S 92 NEYFHNVC 99 (142)
T ss_dssp HHHTTSCC
T ss_pred HHHHccCC
Confidence 88888743
No 7
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=29.44 E-value=30 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=22.9
Q ss_pred cceEEEEecCCeEEEEEeeCCEEEEEEEe
Q 010307 457 DLEVSIRAKNNAWAIARITGGKELYMVLE 485 (513)
Q Consensus 457 ~~Ei~vKt~~d~WVv~k~s~~Relyvvl~ 485 (513)
..|||=+|. +.|+.||.++|+-=||-.+
T Consensus 65 ~LeVI~~~e-~~wwLcRNs~GkyGyVP~~ 92 (102)
T 1ri9_A 65 SLEVIQTTD-DTKVLCRNEEGKYGYVLRS 92 (102)
T ss_dssp BCEEEEESS-SSEEEEEETTTEEEEEEGG
T ss_pred EEEEEEeCC-CCEEEEECCCCCCCceeHH
Confidence 477777774 6888999999999999766
No 8
>1pm4_A YPM; jelly roll fold, toxin; 1.75A {Yersinia pseudotuberculosis} SCOP: b.135.1.1 PDB: 1poq_A
Probab=28.11 E-value=62 Score=26.36 Aligned_cols=29 Identities=34% Similarity=0.395 Sum_probs=22.8
Q ss_pred CcceEEEEecCCeEEEEEeeCCEEEEEEEecCCc
Q 010307 456 KDLEVSIRAKNNAWAIARITGGKELYMVLEKASE 489 (513)
Q Consensus 456 ~~~Ei~vKt~~d~WVv~k~s~~Relyvvl~~k~~ 489 (513)
+-+|+||+-..+. |+++-|+|.||..-|+
T Consensus 15 gkgevci~gnkeg-----k~rggelyavl~stn~ 43 (119)
T 1pm4_A 15 GKGEVCIIGNKEG-----KTRGGELYAVLHSTNV 43 (119)
T ss_dssp TTCEEEEEESTTC-----CCCCEEEEEEEECSCT
T ss_pred cceeEEEEeCccc-----cccCcEEEEEEeecCC
Confidence 3589999975543 7899999999986654
No 9
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=24.10 E-value=2.6e+02 Score=24.86 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=13.4
Q ss_pred ceeEEEEcCcccccccCCC
Q 010307 401 GYRYLLVDGDRNISRASPP 419 (513)
Q Consensus 401 ~~ryiy~n~~~~a~r~s~~ 419 (513)
++|++|+|+.....|-.+|
T Consensus 76 ~PrL~Yvdp~~~~~KGeIp 94 (151)
T 1w1g_A 76 GPHLYYVDPVNKVLKGEIP 94 (151)
T ss_dssp TTEEEEEETTTTEEEEEEC
T ss_pred CceEEEEcCccccccceEe
Confidence 4688999988666655444
No 10
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=22.56 E-value=1.9e+02 Score=23.71 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=36.2
Q ss_pred hhhhhhhhhHHHHHHHhhhc----cCCCccceE--EEecceEEEEEEecCCeEEEEE
Q 010307 43 FSTQLSVIGLSEGLITFTRI----FSPEAACEI--IEAERHSHVFYEAETDIWMVMV 93 (513)
Q Consensus 43 ~n~ql~~IGL~egiv~Ft~~----Fs~~~~~~~--I~T~k~~~v~~e~Ep~~wm~~~ 93 (513)
...-.+..|++..++.-+++ +.|++...+ |+|+|+.++. -|+++|.+++.
T Consensus 37 ~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimI-aPd~~f~liVv 92 (97)
T 3l7h_A 37 NTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMV-APDKDFILIVI 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEE-EEETTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEE-EcCCCEEEEEE
Confidence 34556788888888777765 466666555 7899998765 59999977663
Done!