Query 010307
Match_columns 513
No_of_seqs 149 out of 204
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 03:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wjwa_ d.129.2.1 (A:) Phospho 37.7 18 0.0013 28.8 4.6 44 466-509 55-100 (112)
2 d2gnxa2 d.109.3.1 (A:295-440) 34.9 1.1E+02 0.0083 25.0 10.8 61 33-96 54-116 (146)
3 d1pm4a_ b.135.1.1 (A:) Superan 29.1 28 0.002 26.4 4.1 29 456-489 13-41 (117)
4 d2vgls_ d.110.4.2 (S:) Sigma2 29.0 1.3E+02 0.0093 23.8 10.4 68 52-127 31-98 (142)
5 d2vglm2 d.110.4.2 (M:1-141) Mu 26.7 1.4E+02 0.01 23.4 10.2 55 67-128 43-97 (141)
6 d2hz5a1 d.110.7.1 (A:5-94) Dyn 18.3 1E+02 0.0073 23.0 5.6 49 43-92 32-86 (90)
7 d1lnwa_ a.4.5.28 (A:) MexR rep 14.2 31 0.0023 27.4 1.7 43 467-509 77-122 (141)
8 d1j3wa_ d.110.7.1 (A:) Giding 11.8 3E+02 0.022 21.3 7.3 45 456-501 76-120 (134)
9 d2d8xa2 g.39.1.3 (A:8-32) Pinc 11.2 34 0.0025 19.7 0.7 9 461-469 12-20 (26)
10 d1vkka_ d.109.1.2 (A:) Glia ma 10.3 1.5E+02 0.011 23.3 4.9 47 12-58 60-108 (137)
No 1
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.68 E-value=18 Score=28.77 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCeEEEEEeeCCEE-EEEEEecCC-ccHHhHHHHHHHHHHhhcCCc
Q 010307 466 NNAWAIARITGGKE-LYMVLEKAS-ETLLYASDAVEKFSNRYCNGA 509 (513)
Q Consensus 466 ~d~WVv~k~s~~Re-lyvvl~~k~-~tL~~v~~ev~k~~~~~f~gi 509 (513)
.|+||.-|.|+--- +=|..+-++ +.+-++.++++.++++.++|+
T Consensus 55 ~~grvlIRpSGTEp~iRi~vEa~~~~~~~~i~~~i~~lv~~~~~g~ 100 (112)
T d1wjwa_ 55 TLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLAGGI 100 (112)
T ss_dssp SSEEEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEEeCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 57899999997433 334456555 567799999999999999985
No 2
>d2gnxa2 d.109.3.1 (A:295-440) Hypothetical protein BC048403 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.91 E-value=1.1e+02 Score=24.98 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=36.0
Q ss_pred EEEEcCCCCChhhhhhhhhHHHHHHHhhhccC-CCccceEEE-ecceEEEEEEecCCeEEEEEEEc
Q 010307 33 ILFFFPADLPFSTQLSVIGLSEGLITFTRIFS-PEAACEIIE-AERHSHVFYEAETDIWMVMVVEK 96 (513)
Q Consensus 33 ILfY~P~~~~~n~ql~~IGL~egiv~Ft~~Fs-~~~~~~~I~-T~k~~~v~~e~Ep~~wm~~~v~k 96 (513)
+++++|.+.|..---+.+.+++ .=+...+ .++.+-.-. ...++..+.++||+++++++.+.
T Consensus 54 ~i~s~P~~~p~~h~pnI~~ii~---dk~~~l~~lekiv~~yD~~~q~tyfl~~iep~~tlvvvfe~ 116 (146)
T d2gnxa2 54 AVVSLPSDRPVMHWPNVIMIMT---DRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFES 116 (146)
T ss_dssp EEEEESSSCCGGGHHHHHHHHH---HTHHHHHTSSCEEEEEEGGGTEEEEEEEEETTEEEEEEESS
T ss_pred eEEECCCCCccchhHHHHHHHH---HHhHhhhccccceEeeccccceEEEEEecCCcEEEEEEEec
Confidence 8999997666655455555553 1111111 222221111 24466788999999999998863
No 3
>d1pm4a_ b.135.1.1 (A:) Superantigen (mitogen) Ypm {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=29.10 E-value=28 Score=26.45 Aligned_cols=29 Identities=34% Similarity=0.395 Sum_probs=22.8
Q ss_pred CcceEEEEecCCeEEEEEeeCCEEEEEEEecCCc
Q 010307 456 KDLEVSIRAKNNAWAIARITGGKELYMVLEKASE 489 (513)
Q Consensus 456 ~~~Ei~vKt~~d~WVv~k~s~~Relyvvl~~k~~ 489 (513)
+-+|+||+-..+. |+++-|+|.||..-|+
T Consensus 13 gkgevci~gnkeg-----k~rggelyavl~stn~ 41 (117)
T d1pm4a_ 13 GKGEVCIIGNKEG-----KTRGGELYAVLHSTNV 41 (117)
T ss_dssp TTCEEEEEESTTC-----CCCCEEEEEEEECSCT
T ss_pred cceeEEEEeCccc-----cccCcEEEEEEeecCC
Confidence 3589999975543 7899999999986654
No 4
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.99 E-value=1.3e+02 Score=23.78 Aligned_cols=68 Identities=9% Similarity=0.224 Sum_probs=44.3
Q ss_pred HHHHHHHhhhccCCCccceEEEecceEEEEEEecCCeEEEEEEEcCCCCCchhhHHHHHHHHHHHHHHHHHhccch
Q 010307 52 LSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSI 127 (513)
Q Consensus 52 L~egiv~Ft~~Fs~~~~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~~~~~~i~~~~l~~~L~~~Y~~F~Lf~Gsf 127 (513)
+...+.....+ .++..|.+++.+..+.+ +....+.|++++..... ..-.+...|...++.+.-+.|.+
T Consensus 31 ~~~~~~~~i~~-~~~~~~~i~~~~~~~~v-y~~~~~l~~v~~~~~~~------n~l~~~e~L~~~~~~l~~~~~~~ 98 (142)
T d2vgls_ 31 LIEEVHAVVTV-RDAKHTNFVEFRNFKII-YRRYAGLYFCICVDVND------NNLAYLEAIHNFVEVLNEYFHNV 98 (142)
T ss_dssp HHHHHHHHHHT-CCTTSCSEEEETTEEEE-EEEETTEEEEEEECTTS------CHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhc-CCCCCCceEEECCEEEE-EEEECCEEEEEEECCCc------cHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444443 23344677888777665 57788999999764222 24467788888888888777864
No 5
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.72 E-value=1.4e+02 Score=23.36 Aligned_cols=55 Identities=15% Similarity=0.366 Sum_probs=38.4
Q ss_pred ccceEEEecceEEEEEEecCCeEEEEEEEcCCCCCchhhHHHHHHHHHHHHHHHHHhccchh
Q 010307 67 AACEIIEAERHSHVFYEAETDIWMVMVVEKGKDSDAIWRIDALRKVLKEVHSLFVMFYGSIR 128 (513)
Q Consensus 67 ~~~~~I~T~k~~~v~~e~Ep~~wm~~~v~k~~~~~~~i~~~~l~~~L~~~Y~~F~Lf~Gsf~ 128 (513)
..+.++..+..+.++ ....+.|++++.... ...-...+.|.+..+.++-+.|.++
T Consensus 43 ~~~pi~~~~~~~~~~-~~~~~l~~v~v~~~~------~n~l~~~e~L~~~~~~l~~y~~~~~ 97 (141)
T d2vglm2 43 VRSPVTNIARTSFFH-VKRSNIWLAAVTKQN------VNAAMVFEFLYKMCDVMAAYFGKIS 97 (141)
T ss_dssp CCCSEEEETTEEEEE-EEETTEEEEEEESSC------CCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCeEEECCEEEEE-EEECCEEEEEEecCC------CCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345667777766554 556889998876321 2345678889999999998888743
No 6
>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.30 E-value=1e+02 Score=23.03 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=32.6
Q ss_pred hhhhhhhhhHHHHHHHhhhcc----CCCccceE--EEecceEEEEEEecCCeEEEE
Q 010307 43 FSTQLSVIGLSEGLITFTRIF----SPEAACEI--IEAERHSHVFYEAETDIWMVM 92 (513)
Q Consensus 43 ~n~ql~~IGL~egiv~Ft~~F----s~~~~~~~--I~T~k~~~v~~e~Ep~~wm~~ 92 (513)
...-.+..|++..++..+++. .|+++..+ |+|+|+.++ +-|+++|-+++
T Consensus 32 ~~~t~~yA~~~~~l~~~A~~~vrdlDp~del~flRlRTkk~Ei~-IaPd~~~~liV 86 (90)
T d2hz5a1 32 NPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIM-VAPDKDYFLIV 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEE-EEC---CEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcEEE-EEcCCCEEEEE
Confidence 344567888888888888775 35555554 778998765 57999997765
No 7
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.18 E-value=31 Score=27.43 Aligned_cols=43 Identities=5% Similarity=0.049 Sum_probs=33.6
Q ss_pred CeEEEEEee--CCEEEEEEEecCCccHH-hHHHHHHHHHHhhcCCc
Q 010307 467 NAWAIARIT--GGKELYMVLEKASETLL-YASDAVEKFSNRYCNGA 509 (513)
Q Consensus 467 d~WVv~k~s--~~Relyvvl~~k~~tL~-~v~~ev~k~~~~~f~gi 509 (513)
.+||.-.++ |+|..++.+..++..+. ++.+.++++.++.++|+
T Consensus 77 ~G~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l 122 (141)
T d1lnwa_ 77 RNLVRRERNPSDQRSFQLFLTDEGLAIHQHAEAIMSRVHDELFAPL 122 (141)
T ss_dssp TTSEEEEECSSSSSSEEEEECHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhceeeeccCCCCcchhhccCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456655544 79999999998886555 88889999999888774
No 8
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus [TaxId: 274]}
Probab=11.75 E-value=3e+02 Score=21.33 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=32.8
Q ss_pred CcceEEEEecCCeEEEEEeeCCEEEEEEEecCCccHHhHHHHHHHH
Q 010307 456 KDLEVSIRAKNNAWAIARITGGKELYMVLEKASETLLYASDAVEKF 501 (513)
Q Consensus 456 ~~~Ei~vKt~~d~WVv~k~s~~Relyvvl~~k~~tL~~v~~ev~k~ 501 (513)
...+++++. .+++|+-...+++-+.+|+-.+..+|=-+-=+++|.
T Consensus 76 ~~~~~~ie~-~~g~v~i~~~g~~~~L~vl~~~~~~LG~v~~~~~~a 120 (134)
T d1j3wa_ 76 RFQEEVHQG-ERMGLYVDEAGEHALLVLVFDETAPLGKVKLHGKRA 120 (134)
T ss_dssp SCSEEEEEC-SSCEEEEEESSTTEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ChhheeEEc-CCcEEEEEEeCCCcEEEEEeCCCCChhhHHHHHHHH
Confidence 367999996 788888888888888888877888764444444433
No 9
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.19 E-value=34 Score=19.69 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=7.7
Q ss_pred EEEecCCeE
Q 010307 461 SIRAKNNAW 469 (513)
Q Consensus 461 ~vKt~~d~W 469 (513)
+||+||+-|
T Consensus 12 vikamn~~w 20 (26)
T d2d8xa2 12 VIKAMNNSW 20 (26)
T ss_dssp CEEETTEEE
T ss_pred HHHHHhccC
Confidence 479999988
No 10
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.30 E-value=1.5e+02 Score=23.32 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCCCCccccCcEEEEc--CCCCChhhhhhhhhHHHHHHH
Q 010307 12 GMQLCIFDLRRGQNEGQELDKILFFF--PADLPFSTQLSVIGLSEGLIT 58 (513)
Q Consensus 12 ~~~f~Ifnp~~g~~Eg~e~~kILfY~--P~~~~~n~ql~~IGL~egiv~ 58 (513)
.-.++|||-.....||....+++|.+ |...+.-+|+-.-+=-+++.+
T Consensus 60 ~prY~vy~~~~~~~~g~~~~k~vfi~w~Pd~a~ik~kMlYassk~~l~~ 108 (137)
T d1vkka_ 60 QPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQ 108 (137)
T ss_dssp SCEEEEEECCEECTTSCEECCEEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcccccCCCCccccEEEEEECCCCCChHHhhhhHHHHHHHHH
Confidence 35789999888777887667755533 888888888877665555544
Done!