Your job contains 1 sequence.
>010308
MGVVTISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKR
HQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGV
VKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTRKT
DSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQ
LQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFAN
GPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLES
VRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEF
INGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGN
LNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010308
(513 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 1616 4.2e-166 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 1125 4.5e-114 1
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 359 5.6e-35 2
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 369 2.2e-33 1
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 369 2.2e-33 1
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 367 3.7e-33 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 359 1.8e-32 1
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 358 7.0e-32 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 346 2.9e-30 2
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 345 9.7e-30 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 329 1.3e-29 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 344 2.4e-29 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 326 2.9e-29 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 336 2.0e-28 1
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 334 5.1e-28 1
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 330 1.6e-27 1
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 324 4.3e-27 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 313 5.2e-27 2
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 325 6.8e-27 1
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 293 1.8e-25 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 307 7.2e-25 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 273 3.0e-23 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 256 4.0e-23 2
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 283 2.8e-22 1
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 256 2.3e-21 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 240 2.4e-20 2
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 238 2.2e-19 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 238 6.0e-19 2
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 251 1.5e-18 1
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 242 7.2e-18 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 224 3.6e-16 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 220 8.8e-16 2
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 201 2.4e-15 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 181 1.4e-12 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 178 7.5e-12 1
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 163 1.1e-09 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 122 1.1e-09 2
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 151 3.4e-08 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 127 4.6e-08 2
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 148 1.1e-07 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 147 1.6e-07 1
UNIPROTKB|O83707 - symbol:TP_0709 "RNA polymerase sigma f... 145 1.8e-07 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 141 7.9e-07 1
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 136 1.4e-06 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 133 5.7e-06 1
TIGR_CMR|GSU_3053 - symbol:GSU_3053 "RNA polymerase sigma... 130 8.4e-06 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 129 9.1e-06 2
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 126 3.9e-05 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 120 0.00017 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 117 0.00038 1
UNIPROTKB|Q9K5J6 - symbol:sigB "RNA polymerase sigma-B fa... 114 0.00062 1
TIGR_CMR|BA_0992 - symbol:BA_0992 "RNA polymerase sigma-B... 114 0.00062 1
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
Identities = 335/523 (64%), Positives = 399/523 (76%)
Query: 1 MGVVTISSSPARSPIGLST--ISHRSTSKRPLIVAFKADKSNNQALF-SPQEQIPLPIET 57
MGVV+ISSS ARSP+GL ++HRS+ K+P IVAFKAD S+N AL P+EQ+ +P E
Sbjct: 1 MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAE- 59
Query: 58 PKRHQKRRENSRKR-LERVKGVFSDE---ASPCTLDVDYNEAAAKLENIYKLSPAVTTSE 113
K ++K+RE +R++ + K S E A C+L VDYNEAAA+LE+IYKLSPA TT
Sbjct: 60 -KHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTL- 117
Query: 114 VKYADXXXXXXXXXXXXIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEK- 172
D K+S + K VVRN VK+ KR+SLDKRI L++N EK
Sbjct: 118 --VEDDVEDGGSKAKVSRRRKRKESGEEK-KVVVRNNVKKEKRMSLDKRIALKRNVQEKP 174
Query: 173 VVTKTRK--TDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQP 230
VV K T + E EKIE+LVR+YS S D+VSLDWKKMKIPPVLSSTEH WLFKLMQP
Sbjct: 175 VVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQP 234
Query: 231 MKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFV 290
MK ++VK+ LQK LGREP + E+A NM+A +VKK +E+GRAARNKLIKHNLRLVLFV
Sbjct: 235 MKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFV 294
Query: 291 IKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSS 350
+ KYF +F NGP+FQDLCQAG++GLITAIDRFEPKR+FRLSTYGLFWIRHAIIRSMT S+
Sbjct: 295 MNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSN 354
Query: 351 FTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLH 410
FTRVPFGLESVR EI +AK EL FE+ R PT++E+++ + I+PERYREV++A+KP+LSL+
Sbjct: 355 FTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLN 414
Query: 411 SRHGVTQEEFINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKG 470
S+H VTQEEFINGITDVDGV N RQPA KPKESLVIRQR+GLDGKG
Sbjct: 415 SKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG 474
Query: 471 DRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 513
DRTLGEIAGNLNISREMVRKHEVK LMKLKH RVDYLRQ++V
Sbjct: 475 DRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 517
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 230/424 (54%), Positives = 298/424 (70%)
Query: 91 DYNEAAAKLENIYKLSPAVTTSEVKYADXXXXXXXXXXXXI-GEVEKKSDDVSGKPVVRN 149
DYNE AA LE+IYKLSPAV E K AD G V + + R
Sbjct: 82 DYNEVAAALESIYKLSPAVV--EEKDADEEDEKSKQTKRKRKGRVGRSRNATVTVRSSRR 139
Query: 150 QVKRPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEHEKIEK-LVREYSYSTDLVSLDWK 208
+ +R +R+ L KR+E+R+ E+E+ K + DE E+ L+RE++ STD+ SLDWK
Sbjct: 140 R-RRGQRMDLGKRVEMRRREEEEGGGGAGKVE--DEERGFEEMLLREHAVSTDMGSLDWK 196
Query: 209 KMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKC 268
+MKIPPVL+S + LF++MQPMK +++KE L+ ++ EP D +LAEA NMS Q+++
Sbjct: 197 RMKIPPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRH 256
Query: 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
LEVGRAARNKLIKHNLRLVL+ I KY+ D +N RF D+CQAG GLITAIDRFEPKR F
Sbjct: 257 LEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGF 316
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQG 388
R+STY LFWIRH+I+R++T+S+FTR PF +ES R EI RA+ EL FEL R PT+EE+++
Sbjct: 317 RISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKK 376
Query: 389 VNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXXXXXXXXX 448
V +SP RYR+V++ ++P SLH+R+ VTQEE IN +TD D + +
Sbjct: 377 VGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSHNTLLRLAIDDL 436
Query: 449 XXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508
KPKES+VIRQRFGLDG+G RTL EIAGNLNISREMVRK+E+K LMKLKHPTRV+YL
Sbjct: 437 LDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYL 496
Query: 509 RQHM 512
R++M
Sbjct: 497 RRYM 500
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 359 (131.4 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
Identities = 91/284 (32%), Positives = 154/284 (54%)
Query: 239 EQLQKDLGR--EPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 296
E+L+ D+ + + ++++E + QV+K + R A+ ++++ NLRLV+ + KKY
Sbjct: 385 EELRADMAQVGQYVGLDISEFRRI-VQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTN 443
Query: 297 DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVP 355
G +F DL Q G GL+ A+D+FE +R ++ STY +WIR AI RS+ + T R+P
Sbjct: 444 ---RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 500
Query: 356 FGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGV 415
+ ++ R ++L E+ R PT EE+ + + + E+ R+VMK +K +SL + G
Sbjct: 501 VHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGD 560
Query: 416 TQE----EFI---NGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDG 468
++ +FI N + +D EN ++ P+E V+R RFG+
Sbjct: 561 EEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLT------PREERVLRMRFGIGM 614
Query: 469 KGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512
D TL E+ +++RE +R+ E K L KLKHP+R LR +
Sbjct: 615 NTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 658
Score = 49 (22.3 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
Identities = 18/103 (17%), Positives = 47/103 (45%)
Query: 169 EDEKVVTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPP-VLSSTEHTWLFKL 227
ED+K + + +++K++ E + ++ D +PP +SS + + +
Sbjct: 8 EDQKPEDQEDEVSLDMSQAQVKKMIAE-AREKGYITYDQLNQVLPPDQVSSEQIEDVMSM 66
Query: 228 MQPMKVFVQVKEQLQKDLGREPTDVELAEATN---MSAAQVKK 267
+ M + + E+ +++ + TD+ E+ ++ AQ +K
Sbjct: 67 LSEMGINIIEDEEAEEEEQKGSTDLITTESNREVALAGAQAEK 109
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 369 (135.0 bits), Expect = 2.2e-33, P = 2.2e-33
Identities = 90/307 (29%), Positives = 166/307 (54%)
Query: 217 SSTEHTWLFKLMQPMKVFV-QVKEQLQKDLGREPTDVELAEA-TNMSAAQVK---KCLEV 271
+ + WL K++ K +V +V+EQ ++++ R +++ E T++S ++K + + +
Sbjct: 321 NESNEEWLDKVLASDKPYVAKVREQ-EEEIRRSIQKLQMIEQETSLSVERIKDISRRMSI 379
Query: 272 GRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
G A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R
Sbjct: 380 GEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRG 436
Query: 328 FRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEII 386
++ STY +WIR AI RS+ + T R+P + ++ R ++L E+ R P EE+
Sbjct: 437 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELA 496
Query: 387 QGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXXXXXXX 446
+ + + ++ R+V+K +K +S+ + G ++ + + +E A
Sbjct: 497 ERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAAT 556
Query: 447 XXXXXX-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 505
P+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+HP+R
Sbjct: 557 RDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 616
Query: 506 DYLRQHM 512
+ LR +
Sbjct: 617 EVLRSFL 623
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 369 (135.0 bits), Expect = 2.2e-33, P = 2.2e-33
Identities = 90/307 (29%), Positives = 166/307 (54%)
Query: 217 SSTEHTWLFKLMQPMKVFV-QVKEQLQKDLGREPTDVELAEA-TNMSAAQVK---KCLEV 271
+ + WL K++ K +V +V+EQ ++++ R +++ E T++S ++K + + +
Sbjct: 321 NESNEEWLDKVLASDKPYVAKVREQ-EEEIRRSIQKLQMIEQETSLSVERIKDISRRMSI 379
Query: 272 GRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
G A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R
Sbjct: 380 GEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRG 436
Query: 328 FRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEII 386
++ STY +WIR AI RS+ + T R+P + ++ R ++L E+ R P EE+
Sbjct: 437 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELA 496
Query: 387 QGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXXXXXXX 446
+ + + ++ R+V+K +K +S+ + G ++ + + +E A
Sbjct: 497 ERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAAT 556
Query: 447 XXXXXX-KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRV 505
P+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+HP+R
Sbjct: 557 RDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 616
Query: 506 DYLRQHM 512
+ LR +
Sbjct: 617 EVLRSFL 623
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 367 (134.2 bits), Expect = 3.7e-33, P = 3.7e-33
Identities = 91/250 (36%), Positives = 135/250 (54%)
Query: 263 AQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRF 322
A+++K A+ ++IK NLRLV+ + KKY G +F DL Q G GL+ A+D+F
Sbjct: 378 AKIQKHERTANRAKQEMIKANLRLVVSIAKKYSN---RGLQFLDLVQEGNIGLMKAVDKF 434
Query: 323 EPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPT 381
+ KR ++ STY +W+R AI R++ + T R+P + +I R ++L E+ R PT
Sbjct: 435 DYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPT 494
Query: 382 DEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQRQPAX 440
EE+ +NI+ E+ R+VMK K +SL S G F + I D V+ EN A
Sbjct: 495 LEELSARLNINVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPENAAVLAD 554
Query: 441 XXXXXXXXXXXXKPKESLVIRQRFGLDGKG-DRTLGEIAGNLNISREMVRKHEVKGLMKL 499
PKE ++R RFG+ G D TL E+ N++RE +R+ E K L KL
Sbjct: 555 LREITTKVLSTLTPKEERILRMRFGIGKSGKDHTLEEVGRLFNVTRERIRQIEAKALRKL 614
Query: 500 KHPTRVDYLR 509
+HP+R LR
Sbjct: 615 RHPSRARKLR 624
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 359 (131.4 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 107/370 (28%), Positives = 185/370 (50%)
Query: 157 LSLDKRIEL---RKNEDEKVVTKTRKTDSKDEH-EKIEKLVREYSYSTDLVSLDWKKM-K 211
LS +R EL R+ EK+ KD H KI + ++E S D + + + K
Sbjct: 207 LSASRRQELLAERQELKEKLAEMVTSLRLKDRHIAKIAQRLKELSAKVDTIMAEIAAIEK 266
Query: 212 IPPVLSST--EHTWLFKLMQPMKVFVQVKEQLQKDL-GREPTDVELAEATNMSAAQVKKC 268
V + T E + + +K+ ++ ++ +K + E ++ E + A ++
Sbjct: 267 EAGVSADTLKEIAASEAVGKGIKLSLEDAQKHEKKVRSAEKKLKKVEEESGFKARELSDA 326
Query: 269 LEV---GRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDR 321
L G A A+++L++ NLRLV+ + KKY G +F DL Q G GL+ A+D+
Sbjct: 327 LRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTN---RGLQFLDLIQEGNIGLMKAVDK 383
Query: 322 FEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVP 380
FE +R ++ STY +WIR AI R++ + T R+P + ++ R +L+ E+ R P
Sbjct: 384 FEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREP 443
Query: 381 TDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQ-PA 439
+ EEI + +N+ ++ R+V+K +K +SL + G ++ + + GV + + A
Sbjct: 444 SPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKA 503
Query: 440 XXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKL 499
P+E V+R RFG+ K D TL E+ + ++RE +R+ E K L KL
Sbjct: 504 NLSEQTARVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKL 563
Query: 500 KHPTRVDYLR 509
+HP+R LR
Sbjct: 564 RHPSRAKKLR 573
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 358 (131.1 bits), Expect = 7.0e-32, P = 7.0e-32
Identities = 90/250 (36%), Positives = 136/250 (54%)
Query: 264 QVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFE 323
+++K A+ ++IK NLRLV+ + KKY G +F DL Q G GL+ A+D+F+
Sbjct: 374 KIQKHERAANQAKQEMIKANLRLVVSIAKKYSN---RGLQFLDLVQEGNIGLMKAVDKFD 430
Query: 324 PKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTD 382
KR ++ STY +W+R AI R++ + T R+P + +I R ++L E+ R PT
Sbjct: 431 YKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTL 490
Query: 383 EEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQRQPAXX 441
EE+ +NI+ ++ R+VMK K +SL S G F + I D V+ E+ A
Sbjct: 491 EELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPEDAAVLADL 550
Query: 442 XXXXXXXXXXXKPKESLVIRQRFGLDGKG--DRTLGEIAGNLNISREMVRKHEVKGLMKL 499
PKE ++R RFG+ GKG D TL E+ N++RE +R+ E K L KL
Sbjct: 551 REITTKVLSTLTPKEERILRMRFGI-GKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKL 609
Query: 500 KHPTRVDYLR 509
+HP+R LR
Sbjct: 610 RHPSRARKLR 619
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 346 (126.9 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 89/302 (29%), Positives = 158/302 (52%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDV-ELAEATNMSAAQVKKC---LEVG 272
+ T WL + K + E+ K++ R ++ +L E N++ ++K+ + +G
Sbjct: 392 NETNMKWLEQYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAIG 451
Query: 273 RA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
A A+ ++I+ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R +
Sbjct: 452 EAKSRRAKKEMIEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGY 508
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQ 387
+ STY +WIR AI RS+ + T R+P + ++ R ++L E T EE+ +
Sbjct: 509 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGR 568
Query: 388 GVNISPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXXXX 446
+++ E+ R+V+K +K +S+ + G ++ + I D++ + A
Sbjct: 569 RMDMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATR 628
Query: 447 XXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 506
P+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+HP+R +
Sbjct: 629 EILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAE 688
Query: 507 YL 508
L
Sbjct: 689 KL 690
Score = 43 (20.2 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 17/88 (19%), Positives = 41/88 (46%)
Query: 161 KRIELRKNEDEKVVTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTE 220
K E+ + D ++ + ++D + +E + +++ + +TD V + ++M +L+
Sbjct: 145 KVFEIPPDADSLLLEEDTQSDDDEINEDVAEVLATETRTTDPVRMYMREMGSVELLTREG 204
Query: 221 HTWLFK-----LMQPMKVFVQVKEQLQK 243
+ K + Q M VQ E ++K
Sbjct: 205 EIVIAKRIEEGIRQVMGAVVQYPELIEK 232
Score = 40 (19.1 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
Identities = 39/205 (19%), Positives = 81/205 (39%)
Query: 5 TISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKRHQKR 64
T+ +PA+ P ++ +S ++ +V+ K+ + +P + P + +
Sbjct: 38 TVKRAPAK-PKSVTVAKTKSKKEKAKVVSQPLPKTAEKKPSAPPSETQQPKIGENAAESQ 96
Query: 65 RENSRKRLERVK--GVFSDEASPCTLDVDYNEAAAKLENIY-KLSP-AVTTSEVKYADXX 120
R LE K G E L DY + + ++E I +L+ + E+ D
Sbjct: 97 RLGFGALLEEAKNKGYLVHEDLINLLPNDYADPS-QMEGIIGRLTEMGIKVFEIP-PDAD 154
Query: 121 XXXXXXXXXXIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKR--IELRKNEDEKVVTKTR 178
+ ++ ++DV+ + P R+ + + +EL E E V+ K
Sbjct: 155 SLLLEEDTQS--DDDEINEDVAEVLATETRTTDPVRMYMREMGSVELLTREGEIVIAKRI 212
Query: 179 KTDSKD------EH-EKIEKLVREY 196
+ + ++ E IEK ++EY
Sbjct: 213 EEGIRQVMGAVVQYPELIEKFIKEY 237
Score = 38 (18.4 bits), Expect = 9.6e-30, Sum P(2) = 9.6e-30
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 49 EQIPLPIETPKRHQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLS 106
E P P+ T ++H + + R + + +A P TL + +A A+L + +KLS
Sbjct: 292 ESGPDPLIT-QQHMEELKKLYGRYQNAIKRYGKKA-PATLK--HQKALAELFSTFKLS 345
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 345 (126.5 bits), Expect = 9.7e-30, P = 9.7e-30
Identities = 107/404 (26%), Positives = 190/404 (47%)
Query: 105 LSPAVTTSEVKYADXXXXXXXXXXXXIGEVEKK-SDDVSGKPVVRNQVKRPKRLSL--DK 161
L+ A V A + + E SD++ + + P++ ++ K
Sbjct: 132 LADAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSK 191
Query: 162 RIELRKNEDEKVVTKTRKTDSKD---EHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSS 218
R +L + + K+ D + + +K ++ + + D + L + +L++
Sbjct: 192 R-QLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTA 250
Query: 219 TEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNK 278
E L +Q + +VK +L+ G EPT E AEA +S+ +K + GR++R K
Sbjct: 251 KEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREK 310
Query: 279 LIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWI 338
LI NLRLV+ + K+Y Q+ G FQDL Q G GL+ ++++F+P+ R +TY +WI
Sbjct: 311 LITANLRLVVHIAKQY-QN--RGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWI 367
Query: 339 RHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYR 397
R +I +S+ +S T R+P + + G++ A+ + E P+ EE+ V +S E+
Sbjct: 368 RQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLD 427
Query: 398 EVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQ-PAXXXXXXXXXXXXXKPKE 456
+++ ++ LS+ Q+ IT G+E PKE
Sbjct: 428 KLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKE 487
Query: 457 SLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
+I+ RFG+DG R+L EI +S+E VR+ E + L +LK
Sbjct: 488 RRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLK 531
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 329 (120.9 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 86/272 (31%), Positives = 138/272 (50%)
Query: 243 KDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGP 302
K++GR P L + A+ K+ E A+ KL + NLRLV+ + K+Y G
Sbjct: 106 KEIGRVPL---LTPEEEIELAKRKE--EGDEEAKRKLAEANLRLVVSIAKRYV---GRGM 157
Query: 303 RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESV 361
F DL Q G GL+ A+++F+ ++ ++ STY +WIR AI R++ + T R+P +
Sbjct: 158 LFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVET 217
Query: 362 RGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFI 421
++ R LL EL R PT EEI + + IS ++ RE+MK ++ +SL + G ++ +
Sbjct: 218 INKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHL 277
Query: 422 NG-ITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGN 480
+ D D + +E V+R RFGLD RTL E+
Sbjct: 278 GDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQI 337
Query: 481 LNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512
++RE +R+ E K L KL+HP+R L+ +
Sbjct: 338 FGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 344 (126.2 bits), Expect = 2.4e-29, P = 2.4e-29
Identities = 86/306 (28%), Positives = 158/306 (51%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE-LAEATNMSAAQVK---KCLEVG 272
+ T TW + K + + + +++ R ++ + E T ++ QVK + + +G
Sbjct: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368
Query: 273 RA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R +
Sbjct: 369 EAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQ 387
+ STY +WIR AI RS+ + T R+P + ++ R ++L E+ R PT EE+ +
Sbjct: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485
Query: 388 GVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE-NQRQPAXXXXXXX 446
+ + ++ R+V+K +K +S+ + G ++ + + +E +
Sbjct: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545
Query: 447 XXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 506
+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+HP+R +
Sbjct: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605
Query: 507 YLRQHM 512
LR +
Sbjct: 606 VLRSFL 611
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 326 (119.8 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 92/302 (30%), Positives = 156/302 (51%)
Query: 216 LSSTEHTW-LFKLMQP--MKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVG 272
++ TE + L L P +K+ V+ L K++GR D+ AE A +++ E
Sbjct: 80 ITKTEEEFDLNDLSVPPGVKINDPVRMYL-KEIGR--VDLLSAEEEIRLATRIE---EGD 133
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
A+ +L + NLRLV+ + K+Y G F DL Q G GLI A+++F+ ++ F+ ST
Sbjct: 134 EEAKRRLAEANLRLVVSIAKRYV---GRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFST 190
Query: 333 YGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNI 391
Y +WIR AI R++ + T R+P + ++ R + +LL +L R P+ EEI + +++
Sbjct: 191 YATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDL 250
Query: 392 SPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXXXXXXXX 450
+PE+ RE++K ++ +SL + G + + I D + +
Sbjct: 251 APEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD 310
Query: 451 XXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQ 510
+E V+R RFGLD RTL E+ ++RE +R+ E K L KL+HP+R L+
Sbjct: 311 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKD 370
Query: 511 HM 512
+
Sbjct: 371 FL 372
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 336 (123.3 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 103/389 (26%), Positives = 185/389 (47%)
Query: 131 IGEVE-KKSDDVS---GKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEH 186
IG++E +K ++V +P V V+ ++ R R EK + +
Sbjct: 188 IGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR---RAKGLEKTASGIPSVKTGSSP 244
Query: 187 EKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLG 246
+K + +E ++ L L + EH L +Q + +++ +L + G
Sbjct: 245 KKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHE-LSAGIQDLLKLERLQTELTERSG 303
Query: 247 REPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQD 306
R+PT + A A + +++ + G ++K+IK N+RLV+ + K Y Q G QD
Sbjct: 304 RQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY-Q--GAGMNLQD 360
Query: 307 LCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSS-FTRVPFGLESVRGEI 365
L Q G +GL+ ++F+ + F+ STY +WI+ A+ +S++ S R+PF + +
Sbjct: 361 LVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRV 420
Query: 366 QRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQE-EFINGI 424
+ A+ +L E + P +EEI + +S +R V+ + KP SL + G+ Q + I
Sbjct: 421 KEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVI 480
Query: 425 TDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNIS 484
D + V +E+ +E VIR RFG++ +TL EI + +S
Sbjct: 481 ADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVS 540
Query: 485 REMVRKHEVKGLMKLKHPTRVDYLRQHMV 513
RE VR+ E KLK+ R ++L+Q++V
Sbjct: 541 RERVRQIESSAFRKLKNKKRNNHLQQYLV 569
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 334 (122.6 bits), Expect = 5.1e-28, P = 5.1e-28
Identities = 80/269 (29%), Positives = 144/269 (53%)
Query: 253 ELAEATNMSAAQVK---KCLEVGRA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQ 305
++ E T+++ +K + + +G A A+ ++++ NLRLV+ + KKY G +F
Sbjct: 348 QIEEETHLNIHGIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFL 404
Query: 306 DLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGE 364
DL Q G GL+ A+D+FE +R ++ STY +WIR AI RS+ + T R+P + +
Sbjct: 405 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 464
Query: 365 IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFING- 423
+ R ++L E+ R PT EE+ + + + ++ R+V+K +K +S+ + G ++ +
Sbjct: 465 LNRVSRQMLQEMGREPTPEELAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 524
Query: 424 ITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNI 483
I D G + +E+ V+R RFG+D D TL E+ ++
Sbjct: 525 IEDGSGELPVDSATSENLKGATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDV 584
Query: 484 SREMVRKHEVKGLMKLKHPTRVDYLRQHM 512
+RE +R+ E K L KL+HP+R + L+ +
Sbjct: 585 TRERIRQIEAKALRKLRHPSRSEQLKSFL 613
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 330 (121.2 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 83/306 (27%), Positives = 156/306 (50%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE-LAEATNMSAAQVK---KCLEVG 272
+ T W K + + +++D+ R + + + E T + A +K + + +G
Sbjct: 312 NETNLDWFEAEKTSNKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIAAIKDINRRMSIG 371
Query: 273 RA----ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
A A+ ++++ NLRLV+ + KKY G +F DL Q G GL+ A+D+FE +R +
Sbjct: 372 EAKARRAKKEMVEANLRLVISIAKKYTN---RGLQFLDLIQEGNIGLMKAVDKFEYRRGY 428
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQ 387
+ STY +WIR AI RS+ + T R+P + ++ R ++L E+ R P+ EE+ +
Sbjct: 429 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAE 488
Query: 388 GVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE-NQRQPAXXXXXXX 446
+ + ++ R+V+K +K +S+ + G ++ + + +E +
Sbjct: 489 RMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSATH 548
Query: 447 XXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 506
+E+ V+R RFG+D D TL E+ +++RE +R+ E K L KL+HP+R +
Sbjct: 549 EVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 608
Query: 507 YLRQHM 512
L+ +
Sbjct: 609 ILKSFL 614
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 324 (119.1 bits), Expect = 4.3e-27, P = 4.3e-27
Identities = 90/285 (31%), Positives = 151/285 (52%)
Query: 235 VQVKEQLQKDLGREPTDVELAE-ATNMSAAQVKKCLEV---GRAARNKLIKHNLRLVLFV 290
V++ ++++ L EL+E + AAQ + + + G A+N L++ NLRLV+ +
Sbjct: 247 VELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSL 306
Query: 291 IKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSS 350
K+Y G F DL Q G GLI A+++F+ + ++ STY +WIR AI R+M +
Sbjct: 307 AKRYT---GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 363
Query: 351 FT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSL 409
T R+P + V ++ R + ELL +L R PT EE+ + ++I+PE+ E+ + ++ +SL
Sbjct: 364 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL 423
Query: 410 HSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGL-D 467
G + + I D + V + +E+ V+R RFGL D
Sbjct: 424 DQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTD 483
Query: 468 GKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512
G+ RTL EI ++RE +R+ E K + KL+HP+R LR ++
Sbjct: 484 GQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 313 (115.2 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
Identities = 80/246 (32%), Positives = 129/246 (52%)
Query: 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
++ RA R+ LI+ NLRLV+ V KK+ G DL Q G GLI A+++F+ R F
Sbjct: 278 IDAKRAERH-LIQANLRLVVSVAKKHI---GRGMPLLDLIQEGNIGLIRAVEKFDFHRGF 333
Query: 329 RLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQ 387
+ STY +WIR AI R++ + T R+P + ++ +L +L R PT +EI
Sbjct: 334 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIAV 393
Query: 388 GVNISPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXXXX 446
+++ PE+ RE+ K S+ +SL S G ++ + I D + + +
Sbjct: 394 EMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQID 453
Query: 447 XXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVD 506
P+E V++ RFGL+ RTL E+ N++RE +R+ E K L KL+HP+R
Sbjct: 454 TVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSR 513
Query: 507 YLRQHM 512
L+ ++
Sbjct: 514 KLKDYL 519
Score = 48 (22.0 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 214 PVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE 253
P+LS+ + L K M+ K +++++ + GR P+ E
Sbjct: 112 PLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAE 151
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 325 (119.5 bits), Expect = 6.8e-27, P = 6.8e-27
Identities = 98/338 (28%), Positives = 168/338 (49%)
Query: 174 VTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKK-----MKIPPVLSSTEHTWLFKLM 228
+ K+ +T K + E+ +K ++ Y + S + KK +K LS E T
Sbjct: 276 IVKSMETALKSD-EEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET 334
Query: 229 QPMKVFVQVKEQLQ-KDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLV 287
+ ++++K+ Q K+ + D+E + + Q+K+ ++ A+ ++ K NLRLV
Sbjct: 335 TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEI-LEQIKRGKKISDEAKGRMAKSNLRLV 393
Query: 288 LFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT 347
+ + K+Y G F DL Q G GL+ A+D+FE KR ++ STY +WIR AI R++
Sbjct: 394 VSIAKRYTN---RGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA 450
Query: 348 VSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPI 406
+ T R+P + +I + E L + + P I + V +S ++ ++V+K +K
Sbjct: 451 DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITKEP 510
Query: 407 LSLHSRHGVTQE-EFINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFG 465
+SL + G + +F + + D + + + +E VIR RFG
Sbjct: 511 ISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIRMRFG 570
Query: 466 L-DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502
L D + DRTL EI LN++RE VR+ E + KLKHP
Sbjct: 571 LMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHP 608
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 293 (108.2 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 83/242 (34%), Positives = 119/242 (49%)
Query: 272 GRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLS 331
G AAR L++ NLRLV+ + K+Y G DL Q G GLI A+++F+ + F+ S
Sbjct: 83 GEAARRHLLEANLRLVVSLAKRYT---GRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 139
Query: 332 TYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVN 390
TY +WIR AI R M S T R+P L ++ R K E+ L R TDEE+
Sbjct: 140 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESG 199
Query: 391 ISPERYREVMKASKPILSLHSRHGVTQEEFING-ITDVDGVENENQRQPAXXXXXXXXXX 449
I ++ ++++ S+ +SL G +E + I D + + EN
Sbjct: 200 IPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 259
Query: 450 XXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLR 509
+E VIR RFGLD RTL +I +SRE VR+ E + KL+H R D LR
Sbjct: 260 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLR 319
Query: 510 QH 511
+
Sbjct: 320 SY 321
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 307 (113.1 bits), Expect = 7.2e-25, P = 7.2e-25
Identities = 99/355 (27%), Positives = 171/355 (48%)
Query: 153 RPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKI 212
R RL L++R + R + + D+ + EK +K R + L + +
Sbjct: 213 RSTRL-LERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLE-PDEPFKLFLRDRET 270
Query: 213 PPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVG 272
L++ E LF +Q + + +L+ GREPT E AEA MS+ +++ + G
Sbjct: 271 TEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTG 330
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
R R K+ + N RLV+ V +KY + + G QDL Q G GL+ ++F P + R T
Sbjct: 331 RRCREKMARSNFRLVIHVARKY-EGY--GLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPT 387
Query: 333 YGLFWIRHAIIRSMTVSS-FTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNI 391
Y +WIR +I +S+ +S R+P + ++ ++ +A++E + E ++ PT+ + + I
Sbjct: 388 YAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGEQ-PTNANVARRAGI 446
Query: 392 SPERYREVM-KASKP-ILSLH--SRHGVTQEEFINGITDVDGVENENQR-QPAXXXXXXX 446
+ E+ ++ K KP + H S GVT +E IT+ VE +
Sbjct: 447 TIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQE----ITEDPNVEPPDLSVDRMMMRQQVR 502
Query: 447 XXXXXXKPKESLVIRQRFGL-DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
P+E +I RFG+ DG+ +TL I +S+E +R+ + + L KLK
Sbjct: 503 DFLGILSPREKEIIEHRFGIHDGE-PKTLHVIGDMFGLSKERIRQLQNRALEKLK 556
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 273 (101.2 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 82/283 (28%), Positives = 144/283 (50%)
Query: 227 LMQPMKVFVQVKEQLQKDLGREPTDVELAE---ATNMSAAQV----KKCLEVGRAARNKL 279
L+Q + + QV++ LQK+L + T + L E + +SA + +K L+ +RN++
Sbjct: 33 LVQELGLEQQVQDDLQKNL--DATQLYLGEIGFSPLLSAEEEVYFSRKALKGCEKSRNRM 90
Query: 280 IKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIR 339
I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+R FR STY +WIR
Sbjct: 91 IESNLRLVVKIARRYNN---RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 147
Query: 340 HAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYRE 398
I R++ + T R+P + R EL +L PT EEI + + +S
Sbjct: 148 QTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSVDVSR 207
Query: 399 VMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKES 457
++K ++ I S+ G ++ ++ + D D V + + Q K+
Sbjct: 208 MLKLNEKITSVDVPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNSVVKWLNELNTKQR 267
Query: 458 LVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
V+ +RFGL G TL ++ + ++RE VR+ +V+ L +L+
Sbjct: 268 EVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLR 310
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 256 (95.2 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 70/237 (29%), Positives = 120/237 (50%)
Query: 266 KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPK 325
++ L AAR ++I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+
Sbjct: 82 RRALRGDEAARKRMIESNLRLVVKISRRYSN---RGLALLDLIEEGNLGLIRAVEKFDPE 138
Query: 326 RRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEE 384
R FR STY +WIR I R++ + T R+P + R EL L PT EE
Sbjct: 139 RGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEE 198
Query: 385 IIQGVNISPERYREVMKASKPILSLHSRHGVTQEE-FINGITDVDGVENENQRQPAXXXX 443
I ++ + ++++ ++ I S+ + G ++ ++ + D + E Q
Sbjct: 199 IALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRE 258
Query: 444 XXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
PK+ V+ +RFGL G TL E+ +N++RE VR+ +V+GL +L+
Sbjct: 259 SLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
Score = 37 (18.1 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 174 VTKTRKTDSKDEHEKIEKLVREYSYSTDLVSLD 206
VTK + D +DE ++ + E + +LV+++
Sbjct: 7 VTKVEEFDFEDEALEVLETDAELTSDEELVAVE 39
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 283 (104.7 bits), Expect = 2.8e-22, P = 2.8e-22
Identities = 94/299 (31%), Positives = 146/299 (48%)
Query: 215 VLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRA 274
VLS E L K ++ K +L+ LG EP+D +LA + +S A+++ L
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258
Query: 275 ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYG 334
AR KL N+RLV+ + ++Y D G DL Q G+ GL+ I++F+ + FR+STY
Sbjct: 259 AREKLAMSNVRLVMSIAQRY--DNL-GAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYV 315
Query: 335 LFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISP 393
+WIR + R++ +S T R+P L G I+ AKL L E P+ + I + +N+S
Sbjct: 316 YWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQ 374
Query: 394 ERYREVMKASKPILSLH-----SRHGVTQEEFINGITDVDGVENE---NQRQPAXXXXXX 445
++ R +A + SL S +G+ E + I D +EN A
Sbjct: 375 KKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTR-LENNPWHGYDDLALKEEVS 433
Query: 446 XXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504
+E +IR +GLD K T +I+ + +SRE VR+ + L KLKH R
Sbjct: 434 KLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 256 (95.2 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 69/230 (30%), Positives = 112/230 (48%)
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
+AAR+K+I+ NLRLV+ + K+Y G F DL + G GLI A++RF+ + R ST
Sbjct: 90 KAARDKMIESNLRLVVKIAKRYIN---RGLPFLDLIEEGNMGLIKAVERFKLSKECRFST 146
Query: 333 YGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNI 391
Y +WIR +I R++ S T R+P + ++ + EL+ L R P+ +E+ + +
Sbjct: 147 YATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVKEVATEMKV 206
Query: 392 SPERYREVMKASKPILSLHSRHGVTQEEF-INGITDVDGVENENQRQPAXXXXXXXXXXX 450
+ R +M K S+ G + F I+ I D V +
Sbjct: 207 NSAYVRRLMVLLKKTYSIERPMGENSDYFLIDTIEDTSTVSPAVLLEDLNKYEIVSKWFA 266
Query: 451 XXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
E ++ RFGL+ K +TL I + ++RE +R+ E K L KL+
Sbjct: 267 SLSENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLR 316
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 240 (89.5 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 69/238 (28%), Positives = 120/238 (50%)
Query: 266 KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPK 325
++ L A+R ++I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+
Sbjct: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGN---RGLALLDLIEEGNLGLIRAVEKFDPE 137
Query: 326 RRFRLSTYGLFWIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEE 384
R FR STY +WIR I R++ + T R+P + R EL +L P+ EE
Sbjct: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197
Query: 385 IIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVEN--ENQRQPAXXX 442
I + ++ + +++ ++ I S+ + G E+ + I D EN E+ Q
Sbjct: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL-ADEKENGPEDTTQDDDMK 256
Query: 443 XXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
K+ V+ +RFGL G TL ++ + ++RE VR+ +V+GL +L+
Sbjct: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
Score = 39 (18.8 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 247 REPTDVELAEATNMSAAQVKKCLE 270
+EP+D +LAE +S ++ L+
Sbjct: 33 QEPSDNDLAEEELLSQGATQRVLD 56
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 238 (88.8 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 76/286 (26%), Positives = 140/286 (48%)
Query: 224 LFKLMQPMKVFVQVKEQLQKDLGREPTDVELAE---ATNMSAAQV----KKCLEVGRAAR 276
+ KL + K ++ KE +L + T + L+E + ++A + + L+ +R
Sbjct: 1 MVKLKEQKKT-IESKEDAPSNL--DATQIYLSEIGFSPLLTAEEEVYFSRLALKGDEPSR 57
Query: 277 NKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLF 336
++I+ NLRLV+ + ++Y G DL + G GLI A+++F+P+R FR STY +
Sbjct: 58 KRMIESNLRLVVKIARRYNN---RGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 114
Query: 337 WIRHAIIRSMTVSSFT-RVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPER 395
WIR I R++ + T R+P + RA EL+ +L PT E+I Q ++
Sbjct: 115 WIRQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAEDIAQHLDRPVAD 174
Query: 396 YREVMKASKPILSLHSRH-GVTQEEFINGITDVDGVENENQRQPAXXXXXXXXXXXXXKP 454
++++ ++ I S+ + G + + ++ I D E+ Q
Sbjct: 175 VNKMLRLNERIASVDTPFAGESDKALLDVIADEKSTGPESDLQSEDMSNNIIHWLNELNT 234
Query: 455 KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
K+ V+ +RFGL G TL + + ++RE VR+ +V+ L +L+
Sbjct: 235 KQREVLARRFGLLGYEASTLENVGREIGLTRERVRQIQVEALKRLR 280
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 238 (88.8 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
Identities = 66/208 (31%), Positives = 107/208 (51%)
Query: 269 LEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRF 328
L+ AA++++++ NLRLV+ + KKY G F DL Q G GL+ A+D+F+ +R
Sbjct: 355 LDNANAAKHRMVEANLRLVISIAKKYTN---RGMPFPDLIQEGNIGLMKAVDKFDHRRGH 411
Query: 329 RLSTYGLFWIRHAIIRSMT-VSSFTRVPFGLESVRGEIQRAKLELLFELK-RVPTDEEII 386
+ STY +W R AI R++ S R P + ++ R + L + L R PT EEI
Sbjct: 412 KFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRL-YNLNGREPTVEEIA 470
Query: 387 QGVNISPERYREVMKASKPILSLHSRHGVTQE-----EFI---NGITDVDGVENENQRQP 438
+ ISP++ ++ +K ++ +SL S G +FI N ++ VD V ++N R+
Sbjct: 471 NLLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRK- 529
Query: 439 AXXXXXXXXXXXXXKPKESLVIRQRFGL 466
P+E ++R RFGL
Sbjct: 530 -----VLDEALAMLSPREEKILRYRFGL 552
Score = 63 (27.2 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 473 TLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLR 509
TL ++ N++RE +R+ E K L K++ P+R LR
Sbjct: 579 TLEQVGILYNVTRERIRQIESKSLRKMRSPSRSIKLR 615
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 251 (93.4 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 85/278 (30%), Positives = 133/278 (47%)
Query: 236 QVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYF 295
Q + +L++ LG EP+ +LA + +S +++ + AR L NLRLV+ + +KY
Sbjct: 237 QQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKY- 295
Query: 296 QDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT-RV 354
D G DL Q G+ GL+ I++F+ R FR+STY +WIR + R++ +S T R+
Sbjct: 296 -DNL-GVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRL 353
Query: 355 PFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLH---- 410
P L I+ AK EL + PT E I +NIS ++ +A +LSL
Sbjct: 354 PTYLHERLIAIRGAKYELE-DQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAF 412
Query: 411 -SRHGVTQEEFINGITDVDGVENE---NQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGL 466
S +G+ E + I D V N+ + +E +IR G+
Sbjct: 413 PSLNGLPGETLHSYIED-QNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGI 471
Query: 467 DGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTR 504
GK T +I+ +SRE VR+ + + KLKH R
Sbjct: 472 -GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAAR 508
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 242 (90.2 bits), Expect = 7.2e-18, P = 7.2e-18
Identities = 84/307 (27%), Positives = 149/307 (48%)
Query: 214 PVLSSTEHTWLFKLMQPMKVFVQVKEQLQ-KDLG-----REPTDVELAEATNMSAAQVKK 267
PV+ ++ +L +L + +++ + +KE + ++LG E V LA +
Sbjct: 113 PVVGASRSGFLSRL-EEVQLCLYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANE 171
Query: 268 CLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
L + AR K+ + RLV+ + Y Q G QDL Q G GL+ +RF+P R
Sbjct: 172 ILCRRKEAREKITRCYRRLVVSIATGY-Q--GKGLNLQDLIQEGSIGLLRGAERFDPDRG 228
Query: 328 FRLSTYGLFWIRHAIIRSMTVSS-FTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEII 386
++LSTY +WI+ AI+R++ S ++P + + ++ A L +L+R P+ EEI
Sbjct: 229 YKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIA 288
Query: 387 QGVNISPERYREVMKASKPILSLH---SRHG-VTQEEFINGITDVDGVENENQRQPAXXX 442
+ +N++ R ++ S+ +SL S++G +T +E + G D E +
Sbjct: 289 EHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRG---PDETRPEEMVKREHMK 345
Query: 443 XXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502
+ES V+ FGL+G+ + EI +L +SRE VR+ L KL++
Sbjct: 346 HEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNV 405
Query: 503 TRVDYLR 509
V+ L+
Sbjct: 406 HNVNDLK 412
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 224 (83.9 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 84/342 (24%), Positives = 150/342 (43%)
Query: 175 TKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPP---VLSSTEHTWLFKLMQPM 231
TKT K K +KI+K + T S K +K + + T+ K +
Sbjct: 3 TKTTKKTIKKAAKKIKKPSKRKIKKTAKKSRPKKPIKASDHGLIFAKTKKETTEKEDAEL 62
Query: 232 KVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRA-------ARNKLIKHNL 284
++ ++ +PT + L E K+ L++ R AR ++I+ NL
Sbjct: 63 ANAKAKTKKRRETRSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPKARKQMIEANL 122
Query: 285 RLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIR 344
RLV+ + + Y G F DL + G GL+TA+++F+P+R FR STY +WIR I R
Sbjct: 123 RLVVKIARHYVN---RGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIER 179
Query: 345 S-MTVSSFTRVPFG-LESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402
+ M S R+P ++ + ++ AK +L E+ T E++ ++ + R +M
Sbjct: 180 AIMNQSRTVRLPIHVIKELNVYLRTAK-KLTQEVDHEATPEDVAHLIDKPVQEIRRIMDL 238
Query: 403 SKPILSLH---SRHGVTQEEFINGITDVDGVENENQRQPAXXXXXXXXXXXXXKPKESLV 459
+ S+ S G Q+ ++ + D + ++ Q + V
Sbjct: 239 APSATSIDVPISEDG--QKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDERHREV 296
Query: 460 IRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKH 501
+ RFGL TL + + ++RE VR+ ++ L +L+H
Sbjct: 297 VILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRH 338
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 220 (82.5 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 80/304 (26%), Positives = 143/304 (47%)
Query: 217 SSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAAR 276
+ TE + K++ M+ +++ QL+++ G+ + A A M+ + + L G R
Sbjct: 277 NETEMSTGVKIVADME---RIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCR 333
Query: 277 NKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLF 336
++L+K LVLF+ + Y G +DL QAG G++ +RF+ R ++ STY +
Sbjct: 334 DELVKSTRSLVLFLARNYR---GLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQY 390
Query: 337 WIRHAIIRSMTVSSFTR---VPFGLESVRGEIQRAK--LELLFELKRVPTDEEIIQGVNI 391
WIR ++ S VS R +P + IQ+A+ L+ +K DEEI +
Sbjct: 391 WIRKSM--STMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYA-ADEEIAKLTGH 447
Query: 392 SPERYREVMKASKPILSLHSRHG-VTQEEFINGITD--VDGVENENQRQPAXXXXXXXXX 448
S ++ R + K + S+ + G +F+ D ++ E RQ A
Sbjct: 448 SVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLE 507
Query: 449 XXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYL 508
+P+E V+ R+GL ++L EI L +S+E +RK E + + KL+ + L
Sbjct: 508 GL--EPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDL 565
Query: 509 RQHM 512
R ++
Sbjct: 566 RYYL 569
Score = 51 (23.0 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 18/76 (23%), Positives = 35/76 (46%)
Query: 6 ISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQ-ALFSPQEQIPLP-IETPKRHQK 63
+ ++P + S + ++R + A D+S+ L + I +P + P +++K
Sbjct: 210 VDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRK 269
Query: 64 RREN-SRKRLERVKGV 78
+RE SR E GV
Sbjct: 270 KRERISRNETEMSTGV 285
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 201 (75.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 71/256 (27%), Positives = 123/256 (48%)
Query: 250 TDVELAEATNMSAAQVKKCLEVGR----AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQ 305
+ + L + ++K+ +E + AAR KLI NL+LV V++++ G +
Sbjct: 6 SSMNLPRFPRLGEQEIKELIEKAQKGDVAAREKLINCNLKLVFKVVERFLH---RGYEVE 62
Query: 306 DLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEI 365
DL Q G GLI AID+F+ K++ + STY + I I R + R+ + + +I
Sbjct: 63 DLFQIGTIGLIKAIDKFDLKQQVKFSTYAVPMIVGEIRRFLRDDQAIRISRSTKELGVKI 122
Query: 366 QRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGIT 425
+ K L +L R PT E+ + + S E E ++A + + SL V Q++ + I
Sbjct: 123 LKEKEALTVKLGREPTIAELEETLGYSREAIVEALEAGQSLASLFET--VHQDDG-DPIY 179
Query: 426 DVDGVENE-NQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNIS 484
+D ++ E ++ Q +P+E ++ RF + +T EIA L IS
Sbjct: 180 LLDQIKQEGDEEQTLLENISIKEVLSKLEPRERYILINRFFKE----KTQMEIARTLGIS 235
Query: 485 REMVRKHEVKGLMKLK 500
+ V + E + L+KLK
Sbjct: 236 QVQVSRLERQALLKLK 251
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 181 (68.8 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 64/236 (27%), Positives = 111/236 (47%)
Query: 265 VKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEP 324
+++ E + AR+++I+ N+RLV V++++ G DL Q G GL+ ++D+F+
Sbjct: 21 IRRSQEGDQEARDEIIEKNMRLVWSVVQRFLN---RGYEADDLFQIGCIGLLKSVDKFDL 77
Query: 325 KRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEE 384
+ STY + I I R + +V L+ + +I++AK EL R PT E
Sbjct: 78 SYDVKFSTYAVPMIIGEIQRFLRDDGTVKVSRSLKEMGNKIRKAKDELSKTRGRSPTITE 137
Query: 385 IIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXXXXX 444
I + ISPE +V+ A + + S H E + IT +D + + ++
Sbjct: 138 IADHLGISPE---DVVLAQEAVRLPTSIHETVYENDGDPITLLDQIADADEASWFDKIAL 194
Query: 445 XXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
+ +E L++ R+ DRT E+A L IS+ V + E K L +K
Sbjct: 195 KKAIEELDE-RERLIVYLRY----YRDRTQSEVASRLGISQVQVSRLEKKILQHIK 245
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 178 (67.7 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 60/244 (24%), Positives = 116/244 (47%)
Query: 263 AQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRF 322
A ++K + + AR+ +++ N+RLV V++++ G DL Q G GL+ ++D+F
Sbjct: 21 ALIQKSQDGDQQARDTIVQSNMRLVWSVVQRFLN---RGYEPDDLFQIGCIGLLKSVDKF 77
Query: 323 EPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTD 382
+ + STY + I I R + +V L+ +I++ + EL E R PT
Sbjct: 78 DLSFDVKFSTYAVPMIIGEIQRFLRDDGSVKVSRSLKETGNKIRKMRDELSKEFGRAPTI 137
Query: 383 EEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPAXXX 442
E+ + + ++PE +AS+ S+H E + IT +D + ++++ +
Sbjct: 138 NEVAEALELTPEEVVLAQEASRAPSSIHE---TVYENDGDPITILDQIADQSETKWFDKI 194
Query: 443 XXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502
+ +E L++ R+ D+T E+A + IS+ V + E K L ++K
Sbjct: 195 ALKEAIRELDE-RERLIVYLRY----YKDQTQSEVAERIGISQVQVSRLEKKILKQMKD- 248
Query: 503 TRVD 506
R+D
Sbjct: 249 -RID 251
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 163 (62.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 70/250 (28%), Positives = 111/250 (44%)
Query: 253 ELAEATNMSAAQV-KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAG 311
+L TN ++ K E AR KLI NLRLVL +I+++ G DL Q G
Sbjct: 15 KLPVLTNQEMKKLFLKVKEGDMEARQKLISGNLRLVLSIIQRFTN---RGEYVDDLFQVG 71
Query: 312 VKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLE 371
GLI AID F+ ++ + STY + I I R + ++ RV L V + + +
Sbjct: 72 CIGLIKAIDNFDLEQNVKFSTYAVPMIIGEIRRYLRDNNPIRVSRSLRDVAYKALQVRDN 131
Query: 372 LLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVE 431
L+ R PT EI Q + + E + A + +SL + Q+ + I +D ++
Sbjct: 132 LVGRFSREPTVSEIAQELKVPQEEVVFALDAIQDPVSLFEP--IYQDGG-DPIFVMDQIK 188
Query: 432 NE-NQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRK 490
+E N +E L+++ RF +GK T E+A + IS+ V +
Sbjct: 189 DEKNTDHNWLQGIALKEALERLNERERLILKLRF-YEGK---TQMEVAEEIGISQAQVSR 244
Query: 491 HEVKGLMKLK 500
E L L+
Sbjct: 245 LEKAALNHLR 254
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 122 (48.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 262 AAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDR 321
A + + L+ R AR+ L + NLRLV ++KK F+ G +DL G GLI AID
Sbjct: 37 AYYIDRLLQGDREARDVLAERNLRLVAHIVKK-FE--GTGEATEDLISIGTIGLIKAIDT 93
Query: 322 FEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTR 353
F P + +L+TY + + I+ + + R
Sbjct: 94 FRPDKGTKLATYAAKCVENEILMHLRATKKNR 125
Score = 83 (34.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 454 PKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKL 499
P+E VI +RFGL +T EIA + ISR V + E + ++KL
Sbjct: 178 PRERKVIEERFGLSQTPRKTQREIAKKMGISRSYVSRIEKRAILKL 223
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 151 (58.2 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 61/231 (26%), Positives = 106/231 (45%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
+AR KL+ NLRLVL VI+++ G DL Q G GL+ +ID F+ + + STY
Sbjct: 37 SAREKLVNGNLRLVLSVIQRFNN---RGEYVDDLFQVGCIGLMKSIDNFDLGQNVKFSTY 93
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISP 393
+ I I R + ++ RV L + + + + +L+ E + PT +I + + ++
Sbjct: 94 AVPMIIGEIRRYLRDNNPIRVSRSLRDIAYKALQVREKLIAENSKEPTAMDIAKVLEVTH 153
Query: 394 ERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPA-XXXXXXXXXXXXX 452
E + A + +SL + + I +D + +E Q+
Sbjct: 154 EEIVFALDAIQDPVSLFEP---IYNDGGDPIFVMDQLSDEKQKDEQWVEELALKEGMKRL 210
Query: 453 KPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPT 503
+E ++IR+RF GK T E+A + IS+ V + E K +K + T
Sbjct: 211 NDREKMIIRKRF-FQGK---TQMEVAEEIGISQAQVSRLE-KSAIKQMNKT 256
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 127 (49.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 40/131 (30%), Positives = 72/131 (54%)
Query: 273 RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLST 332
+AAR+ LI+ NLRLV+++ +K F++ G +DL G GLI A++ F P+++ +L+T
Sbjct: 56 QAARSLLIERNLRLVVYIARK-FEN--TGINIEDLISIGTIGLIKAVNTFNPEKKIKLAT 112
Query: 333 YGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEII-QGVNI 391
Y I + I+ + ++ R + I ELL + TD++II + +
Sbjct: 113 YASRCIENEILMHLRRNNKNRSEVSFDEPLN-IDWDGNELLLS-DVLGTDDDIITKDLEA 170
Query: 392 SPERYREVMKA 402
+ +R+ +MKA
Sbjct: 171 TVDRHL-LMKA 180
Score = 62 (26.9 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 455 KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
+E ++ RFGL G ++T ++A L IS+ + + E + + +L+
Sbjct: 187 REKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLR 232
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 63/240 (26%), Positives = 105/240 (43%)
Query: 275 ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYG 334
A + LI NLR V+ + +Y + + G + DL Q G GL+ A+ +F P + RL +Y
Sbjct: 45 AAHSLITSNLRFVVKIAAEY-RSY--GLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYA 101
Query: 335 LFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPE 394
++WIR A I++ +S+++ + G +A+ +L F+L + + + G +
Sbjct: 102 VWWIR-AYIQNHIISAWSLLKIGTT-------QAQKKLFFKLNQAKNAIKGLTGTDDIEA 153
Query: 395 RYREVMKASKPILSLHSR-HG--VTQEEFING--ITDVDGVENENQRQPAXXXXXXXX-- 447
+ +L + R G E NG +T ++ + +E Q Q
Sbjct: 154 TATSLHVKESEVLEMDQRMRGDFYLDAEIKNGDGLTILETLADERQNQEDTLAELQESEL 213
Query: 448 -------XXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
KE ++ QR D TL EIA +ISRE VR+ E L K+K
Sbjct: 214 LKQHIAGALGKLNEKERFIVEQRVTADTP--LTLQEIADRFSISRERVRQIEEAALRKIK 271
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 147 (56.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 68/276 (24%), Positives = 118/276 (42%)
Query: 243 KDLGREPTDVELAEA-TNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANG 301
K + R+ EL +A T ++ A + AA ++LI +RL + + K F+ + G
Sbjct: 9 KRMSRQAMKAELLDAETELALAYAWRDHR-DEAALHRLITAYMRLAISMAAK-FKRY--G 64
Query: 302 PRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAI----------IRSMTVSSF 351
DL Q GL+ A D+F+P R R STY ++WI+ +I +R+ + SS
Sbjct: 65 APMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWWIKASIQDYVMRNWSMVRTGSTSSQ 124
Query: 352 TRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA--SKPILSL 409
+ F + V+ ++R L R + I + + P R E+M+ S SL
Sbjct: 125 KSLFFNMRRVQARLEREAATDGLALDRHQLHQMIASEIGV-PLRDVEMMEGRLSGSDFSL 183
Query: 410 HSRHGVTQE--EFINGITDVDGVENE---NQRQPAXXXXXXXXXXXXXKPKESLVIRQRF 464
++ +E E+I + D E ++ +E ++R+R
Sbjct: 184 NATQASDEEGREWIEALEDESEQAAELVAHRHDTEQLRDWLIEAMQALNERERFIVRERK 243
Query: 465 GLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
D RTL + L +S+E VR+ E K++
Sbjct: 244 LRDEP--RTLESLGDELGLSKERVRQLEAAAFAKMR 277
>UNIPROTKB|O83707 [details] [associations]
symbol:TP_0709 "RNA polymerase sigma factor" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 EMBL:AE000520 GenomeReviews:AE000520_GR
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
OMA:TYAITRI TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:A71290
RefSeq:NP_219146.1 ProteinModelPortal:O83707 IntAct:O83707
MINT:MINT-6480056 GeneID:2610969 KEGG:tpa:TP0709 PATRIC:20531509
ProtClustDB:PRK06288 Uniprot:O83707
Length = 262
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 286 LVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRS 345
LV +V K F DL G+ GL AID+++P++ R +TY + IR AI
Sbjct: 37 LVKYVASKIAVGKPGNVEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDE 96
Query: 346 MTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVM-KAS- 403
+ S VP + +I+ A +L L R TD EI +NI E Y +++ K S
Sbjct: 97 LR--SIDWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLLLKVSG 154
Query: 404 KPILSL-HSRHGVTQEEFIN 422
++SL S+ G + + ++
Sbjct: 155 TSVISLADSKFGGDERDHVS 174
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 141 (54.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 61/242 (25%), Positives = 114/242 (47%)
Query: 277 NKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLF 336
+K++ +LRL + Y + + P+ + + +A V GL+ A+ RF+P++ FRL+TY ++
Sbjct: 51 HKMVTSHLRLAAKIAMGY-RGYGL-PQAEVISEANV-GLMQAVKRFDPEKGFRLATYAMW 107
Query: 337 WIRHAIIRSMTVSSFTRVPFGLESVRGEI------QRAKLELLFELKRVPTD-EEIIQGV 389
WIR A I+ + S++ V G S + ++ +AK+ L E P + I +
Sbjct: 108 WIR-AAIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEEGDLRPENVARIAHDL 166
Query: 390 NISPERYREV-MKASKPILSLHSRHGVTQE---EFINGITDVDG---VENENQRQPAXXX 442
+S + + + S SL++ G E ++ + + D D + E + +
Sbjct: 167 GVSEDDVISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAADYEARDELEARR 226
Query: 443 XXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHP 502
+E V+ QR LD TL +++ N+SRE +R+ EV+ KL+
Sbjct: 227 ELLASALDVLNEREKDVLTQRRLLDQTV--TLEDLSAQYNVSRERIRQIEVRAFEKLQKR 284
Query: 503 TR 504
R
Sbjct: 285 MR 286
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 136 (52.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 42/128 (32%), Positives = 67/128 (52%)
Query: 269 LEVGRA-ARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRR 327
+E G A ARN LI+HNLRLV ++KK F++ G +DL G GLI AI+ + +
Sbjct: 42 MEQGDAQARNLLIEHNLRLVAHIVKK-FEN--TGEDAEDLISIGTIGLIKAIESYSAGKG 98
Query: 328 FRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRA-KLELLFELKRVPTDEEII 386
+L+TY I + I+ + V T+ L G+ + ++ L+ LK E++I
Sbjct: 99 TKLATYAARCIENEILMHLRVLKKTKKDVSLHDPIGQDKEGNEISLIDILKS--ESEDVI 156
Query: 387 QGVNISPE 394
+ +S E
Sbjct: 157 DMIQLSME 164
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 133 (51.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 65/255 (25%), Positives = 112/255 (43%)
Query: 266 KKCLEVG--RAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFE 323
K+ E G +AA+ ++ H LR V+ V K Y G DL Q G GL+ A+ RF+
Sbjct: 42 KRLQETGDLQAAKQLIMSH-LRFVVHVAKGYA---GYGLPQADLIQEGNIGLMKAVKRFD 97
Query: 324 PKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPT-- 381
P RL ++ + WI+ A I + ++ R+ V+ +A+ +L F +++ T
Sbjct: 98 PDVGVRLVSFAVHWIK-AEIHEYVLKNW-RI------VKVATTKAQRKLFFNIRKAKTRL 149
Query: 382 ----DEEII---QGVNISPERYREV---MKASKPILSLHS----RHGVTQEEFING-ITD 426
D+E+ + + +S E+ M A P L S H ++ +D
Sbjct: 150 GWFSDDEVTMVAENLGVSKADVTEMESRMAAQDPAFDLSSDNDDEHDFAPVHYLEDHSSD 209
Query: 427 V-DGVENENQRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISR 485
+ + +EN+N A + + ++R R+ D K TL E+A +S
Sbjct: 210 LAENIENDNWESNAQGRLLSAIKTLDERSQH--ILRARWLDDDK--TTLQELAETYQVSA 265
Query: 486 EMVRKHEVKGLMKLK 500
E +R+ E + KLK
Sbjct: 266 ERIRQLEKNAMNKLK 280
>TIGR_CMR|GSU_3053 [details] [associations]
symbol:GSU_3053 "RNA polymerase sigma factor for flagellar
operon" species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI
TIGRFAMs:TIGR02479 RefSeq:NP_954095.1 ProteinModelPortal:Q748E9
GeneID:2686906 KEGG:gsu:GSU3053 PATRIC:22028957
ProtClustDB:CLSK829077 BioCyc:GSUL243231:GH27-2993-MONOMER
Uniprot:Q748E9
Length = 250
Score = 130 (50.8 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 57/232 (24%), Positives = 105/232 (45%)
Query: 276 RNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGL 335
R++LI ++L LV F++ + +DL A + GLITA +RF+P R + T+
Sbjct: 20 RDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLITAAERFDPTRGVQFKTFAE 79
Query: 336 FWIRHAIIRSMTVSSF-TRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPE 394
IR II + + TR L ++++ + L +L R PT EE+ + +S +
Sbjct: 80 QRIRGTIIDELRSQDWLTR---SLRDKFKKLEKEFVLLEHQLGRNPTSEEVATALKMSVD 136
Query: 395 RYREVMKASKPILSLHSRHGVTQEEFIN--GITDV--D-GVENENQRQPAXXXXXXXXXX 449
Y ++++ +LS S +++ + G+ D+ D +EN + A
Sbjct: 137 EYYQMLEEIH-LLSFVSLDESWEDDDGSPFGLLDILADTSIENPQSQLMARQMLDSLTES 195
Query: 450 XXXKP-KESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLK 500
P KE LVI + + L EI L +S + + + +++L+
Sbjct: 196 IESLPEKERLVITLYY----YEELNLKEIGAVLELSESRISQLHSQAIVRLR 243
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 129 (50.5 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 47/166 (28%), Positives = 86/166 (51%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
AA++ LI+ NLRLV+++ +K F++ G +DL G GLI A++ F P+++ +L+TY
Sbjct: 55 AAKSTLIERNLRLVVYIARK-FEN--TGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATY 111
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISP 393
I + I+ + +S R+ + + ELL + T+ +II V +
Sbjct: 112 ASRCIENEILMYLRRNSKIRLEVSFDEPLN-VDWDGNELLLS-DVLGTEGDIIYKV-MED 168
Query: 394 ERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENENQRQPA 439
E ++++K + L+ R + + F G+TD G E Q++ A
Sbjct: 169 EVEKKLLKVALSKLNQRERK-IMELRF--GLTD--GYER-TQKEVA 208
Score = 37 (18.1 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 212 IPPVLSSTEHTWLFKLM 228
+PP LSS E L L+
Sbjct: 33 LPPPLSSEEENTLLTLL 49
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 61/245 (24%), Positives = 114/245 (46%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
A ++L+ +LRLV+ V F+++ P + + + + GL+ A+ +F P FRLSTY
Sbjct: 46 ADAHRLVTSHLRLVVKVALS-FKNYEL-PLIELIMEGNI-GLMQAVKKFNPTLGFRLSTY 102
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESVRGEI--QRAKLEL-LFELKRVPTDEEIIQGVN 390
++WI+ A I+ + S++ + G + ++ K++ LF+ T E+I N
Sbjct: 103 AIWWIK-AFIKDYILKSWSCIKIGTTQAQRKLFFSLRKIKKKLFKYNHNITKEDIKLIAN 161
Query: 391 ISPERYREVMKASKPIL----SLH-------SRHGVTQEEFINGITDVDGVENE---NQR 436
+EV + ++ L SL+ +++GV +E I D E+ N+
Sbjct: 162 KCSTSEQEVEQMNRYFLYRDRSLNELVFSNDNQNGVELQEIIK--CDTPNQEDTYLLNEE 219
Query: 437 QPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGL 496
+ + IR+R L + D TL +++ NIS+E VR+ E+
Sbjct: 220 LNIKKALISQALSTLNERYRDIFIRRR--LIEEPD-TLDKLSQEYNISKERVRQIEMHAF 276
Query: 497 MKLKH 501
K+K+
Sbjct: 277 TKVKN 281
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 61/246 (24%), Positives = 109/246 (44%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
AA+ ++ H LR V+ + + Y G DL Q G GL+ A+ RF P+ RL ++
Sbjct: 49 AAKTLILSH-LRFVVHIARNYA---GYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSF 104
Query: 334 GLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPT-------DE-EI 385
+ WI+ A I + ++ R+ V+ +A+ +L F L++ DE E+
Sbjct: 105 AVHWIK-AEIHEYVLRNW-RI------VKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEM 156
Query: 386 I-QGVNISPERYREV---MKASKPILSLHSRHGVTQEEF--INGITD-----VDGVENEN 434
+ + + ++ + RE+ M A L S + + + D DG+E++N
Sbjct: 157 VARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDN 216
Query: 435 QRQPAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVK 494
+ A + ++ +IR R+ LD TL E+A +S E VR+ E
Sbjct: 217 WEEQAANRLTDAMQGLDERSQD--IIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKN 273
Query: 495 GLMKLK 500
+ KL+
Sbjct: 274 AMKKLR 279
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 61/254 (24%), Positives = 106/254 (41%)
Query: 274 AARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY 333
+A +L++ LRLV+ V + F+++ G DL G GL+ AI F P ++TY
Sbjct: 45 SAAQRLVEAYLRLVVKVTVR-FRNY--GFPLMDLASEGNIGLMKAIKNFNPTLGHGIATY 101
Query: 334 GLFWIRHAI----IRSM------TVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDE 383
++WI+ AI IRS T ++ R+ F L ++ A L+ +KR+
Sbjct: 102 AIWWIKAAINEYVIRSWSMVKIGTTAAQRRLFFNLRKLKNSGSVAGLDENQVVKRI---S 158
Query: 384 EIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE------NQRQ 437
EI+ E ++ A +SL+ + G ++ + E +RQ
Sbjct: 159 EILAVSKNDVEEMERILNARD--VSLNMQLGEDDSSEVHDLVPFPEANQEAVLLETQERQ 216
Query: 438 PAXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLM 497
+ KE V R + RTL E+ +IS+E VR+ + +
Sbjct: 217 MKSQLLYEAVEALEARHKEIFVARSLSAVP----RTLKELGEKFSISQERVRQIHARAMK 272
Query: 498 KLKHPTRVDYLRQH 511
K+ +Y+ +H
Sbjct: 273 KV-----TEYVEKH 281
>UNIPROTKB|Q9K5J6 [details] [associations]
symbol:sigB "RNA polymerase sigma-B factor" species:1392
"Bacillus anthracis" [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IMP] [GO:0016987 "sigma factor activity"
evidence=IMP] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 EMBL:AJ272497
RefSeq:NP_843493.1 RefSeq:YP_017620.1 RefSeq:YP_027202.1
ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 41/161 (25%), Positives = 76/161 (47%)
Query: 244 DLGREPTDVELAEATNMSAA-QVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGP 302
++ +PT++ + + A Q +C E A+ +L+ H LV + +Y + GP
Sbjct: 2 EIQSQPTNLTKEDVIKLIAEFQQNQCGE----AQERLVDHYKNLVYSIAYRYSK---GGP 54
Query: 303 RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSF-TRVPFGLESV 361
+D+ Q G+ GL+ AI R++ + + I I + + ++ VP ++ +
Sbjct: 55 MHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIPTIVGEIKKYLRDKTWGIHVPRRIKDL 114
Query: 362 RGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402
G+I+ A EL L+R P EI + +S E E+M A
Sbjct: 115 GGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEEVLEIMDA 155
>TIGR_CMR|BA_0992 [details] [associations]
symbol:BA_0992 "RNA polymerase sigma-B factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=IMP] [GO:0016987
"sigma factor activity" evidence=IMP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 EMBL:AJ272497 RefSeq:NP_843493.1 RefSeq:YP_017620.1
RefSeq:YP_027202.1 ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 41/161 (25%), Positives = 76/161 (47%)
Query: 244 DLGREPTDVELAEATNMSAA-QVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGP 302
++ +PT++ + + A Q +C E A+ +L+ H LV + +Y + GP
Sbjct: 2 EIQSQPTNLTKEDVIKLIAEFQQNQCGE----AQERLVDHYKNLVYSIAYRYSK---GGP 54
Query: 303 RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSF-TRVPFGLESV 361
+D+ Q G+ GL+ AI R++ + + I I + + ++ VP ++ +
Sbjct: 55 MHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIPTIVGEIKKYLRDKTWGIHVPRRIKDL 114
Query: 362 RGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKA 402
G+I+ A EL L+R P EI + +S E E+M A
Sbjct: 115 GGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEEVLEIMDA 155
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 513 488 0.00081 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 603 (64 KB)
Total size of DFA: 255 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.82u 0.10s 47.92t Elapsed: 00:00:02
Total cpu time: 47.83u 0.10s 47.93t Elapsed: 00:00:02
Start: Tue May 21 11:13:54 2013 End: Tue May 21 11:13:56 2013