BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010311
(513 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31503|PO2F1_RAT POU domain, class 2, transcription factor 1 (Fragment) OS=Rattus
norvegicus GN=Pou2f1 PE=2 SV=2
Length = 632
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ +ALEK + E++ PT E + +AEQ+ + ++ + WFC+RR K
Sbjct: 272 RTSIETNIR---------VALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFCNRRQK 322
Query: 67 EKRL 70
EKR+
Sbjct: 323 EKRI 326
>sp|P25425|PO2F1_MOUSE POU domain, class 2, transcription factor 1 OS=Mus musculus
GN=Pou2f1 PE=2 SV=3
Length = 770
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ +ALEK + E++ PT E + +AEQ+ + ++ + WFC+RR K
Sbjct: 386 RTSIETNIR---------VALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFCNRRQK 436
Query: 67 EKRL 70
EKR+
Sbjct: 437 EKRI 440
>sp|P14859|PO2F1_HUMAN POU domain, class 2, transcription factor 1 OS=Homo sapiens
GN=POU2F1 PE=1 SV=2
Length = 743
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ +ALEK + E++ PT E + +A+Q+ + ++ + WFC+RR K
Sbjct: 383 RTSIETNIR---------VALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 433
Query: 67 EKRL 70
EKR+
Sbjct: 434 EKRI 437
>sp|Q28BL7|PO2F1_XENTR POU domain, class 2, transcription factor 1 OS=Xenopus tropicalis
GN=pou2f1 PE=2 SV=1
Length = 757
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ +ALEK + E++ PT E + +A+Q+ + ++ + WFC+RR K
Sbjct: 399 RTSIETNIR---------VALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 449
Query: 67 EKRL 70
EKR+
Sbjct: 450 EKRI 453
>sp|Q29076|PO2F1_PIG POU domain, class 2, transcription factor 1 OS=Sus scrofa GN=POU2F1
PE=2 SV=1
Length = 745
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ +ALEK + E++ PT E + +A+Q+ + ++ + WFC+RR K
Sbjct: 385 RTSIETNIR---------VALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 435
Query: 67 EKRL 70
EKR+
Sbjct: 436 EKRI 439
>sp|P15143|PO2F1_CHICK POU domain, class 2, transcription factor 1 OS=Gallus gallus
GN=POU2F1 PE=2 SV=1
Length = 739
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ +ALEK + E++ PT E + +A+Q+ + ++ + WFC+RR K
Sbjct: 379 RTSIETNIR---------VALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 429
Query: 67 EKRL 70
EKR+
Sbjct: 430 EKRI 433
>sp|P16143|PO2F1_XENLA POU domain, class 2, transcription factor 1 OS=Xenopus laevis
GN=pou2f1 PE=1 SV=3
Length = 758
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ +ALEK + E++ PT E + +A+Q+ + ++ + WFC+RR K
Sbjct: 399 RTSIETNIR---------VALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQK 449
Query: 67 EKRL 70
EKR+
Sbjct: 450 EKRI 453
>sp|Q54PU1|HBX10_DICDI Homeobox protein 10 OS=Dictyostelium discoideum GN=hbx10 PE=3 SV=1
Length = 638
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69
KR+ +P Q+ LE+ + K P+++++ ++A Q+G++ ++V WF ++R K KR
Sbjct: 304 KRQRTSPEQLAILEQIFETDKMPSQQIRVRLANQLGMSSRRVQIWFQNKRAKVKR 358
>sp|P34684|LIN39_CAEEL Homeobox protein lin-39 OS=Caenorhabditis elegans GN=lin-39 PE=2
SV=1
Length = 253
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MHSEENKVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWF 60
+HS EK + Y T QV+ LEK ++ HKY T + + +VA + LTE+QV WF
Sbjct: 155 VHSTTGGSRGEKRQRTAY-TRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWF 213
Query: 61 CHRRLKEKRLSVDE 74
+RR+K K+ + D+
Sbjct: 214 QNRRMKHKKENKDK 227
>sp|P31362|PO2F3_MOUSE POU domain, class 2, transcription factor 3 OS=Mus musculus
GN=Pou2f3 PE=2 SV=2
Length = 431
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ + LEK + ++ P+ E S +AEQ+ + ++ V WFC+RR K
Sbjct: 278 RTSIETNIR---------LTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQK 328
Query: 67 EKRLSVDEA 75
EKR++ A
Sbjct: 329 EKRINCPVA 337
>sp|P42571|PO2F3_RAT POU domain, class 2, transcription factor 3 OS=Rattus norvegicus
GN=Pou2f3 PE=2 SV=1
Length = 430
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ + LEK + ++ P+ E S +AEQ+ + ++ V WFC+RR K
Sbjct: 278 RTSIETNIR---------LTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQK 328
Query: 67 EKRLSVDEA 75
EKR++ A
Sbjct: 329 EKRINCPVA 337
>sp|Q9UKI9|PO2F3_HUMAN POU domain, class 2, transcription factor 3 OS=Homo sapiens
GN=POU2F3 PE=2 SV=3
Length = 436
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E NI+ + LEK + ++ P+ E S +AEQ+ + ++ V WFC+RR K
Sbjct: 285 RTSIETNIR---------LTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQK 335
Query: 67 EKRLSVDEA 75
EKR++ A
Sbjct: 336 EKRINCPVA 344
>sp|Q54F46|WARA_DICDI Homeobox protein Wariai OS=Dictyostelium discoideum GN=warA PE=2
SV=1
Length = 803
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDE 74
KR+ +P Q+ LEK + H++P ++SQ+A ++ +T + V WF +RR K + +
Sbjct: 165 KRKRTSPDQLKLLEKIFMAHQHPNLNLRSQLAVELHMTARSVQIWFQNRRAKARNMEFKP 224
Query: 75 AFVGGRQD 82
G D
Sbjct: 225 QLSHGGSD 232
>sp|Q9C056|NKX62_HUMAN Homeobox protein Nkx-6.2 OS=Homo sapiens GN=NKX6-2 PE=2 SV=2
Length = 277
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 16/124 (12%)
Query: 10 LEKNIKRRYKTPA----QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRL 65
L+K+ K+++ P Q+ ALEK + + KY ++++A +G+TE QV WF +RR
Sbjct: 142 LDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRT 201
Query: 66 K-EKRLSVDEAFVGGRQDRSSGVIQDRGSGLRQDSCGSTKQGDY-RSIDPR---EVQSRM 120
K KR +V+ A +QD + ++ GS D +Y R +DP E +R+
Sbjct: 202 KWRKRHAVEMASAKKKQDSDAEKLKVGGSDAEDDD-------EYNRPLDPNSDDEKITRL 254
Query: 121 LYCH 124
L H
Sbjct: 255 LKKH 258
>sp|P10038|MAB5_CAEEL Homeobox protein mab-5 OS=Caenorhabditis elegans GN=mab-5 PE=2 SV=3
Length = 200
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDEA 75
R+ + +Q + LEK ++ HKY T + + +++E + LTE+QV WF +RR+K K+ + E
Sbjct: 121 RQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAKGEG 180
>sp|O35762|NKX61_RAT Homeobox protein Nkx-6.1 OS=Rattus norvegicus GN=Nkx6-1 PE=2 SV=1
Length = 365
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 5 ENKVSLEKNIKRRYKTPA----QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWF 60
+ + L+K+ KR++ P Q+ ALEK + + KY ++++A +G+TE QV WF
Sbjct: 226 QGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWF 285
Query: 61 CHRRLK-EKRLSVDEAFVGGRQD 82
+RR K K+ + + A +QD
Sbjct: 286 QNRRTKWRKKHAAEMATAKKKQD 308
>sp|Q60554|NKX61_MESAU Homeobox protein Nkx-6.1 OS=Mesocricetus auratus GN=NKX6-1 PE=1
SV=1
Length = 364
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 5 ENKVSLEKNIKRRYKTPA----QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWF 60
+ + L+K+ KR++ P Q+ ALEK + + KY ++++A +G+TE QV WF
Sbjct: 225 QGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWF 284
Query: 61 CHRRLK-EKRLSVDEAFVGGRQD 82
+RR K K+ + + A +QD
Sbjct: 285 QNRRTKWRKKHAAEMATAKKKQD 307
>sp|Q99MA9|NKX61_MOUSE Homeobox protein Nkx-6.1 OS=Mus musculus GN=Nkx6-1 PE=1 SV=1
Length = 365
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 5 ENKVSLEKNIKRRYKTPA----QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWF 60
+ + L+K+ KR++ P Q+ ALEK + + KY ++++A +G+TE QV WF
Sbjct: 226 QGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWF 285
Query: 61 CHRRLK-EKRLSVDEAFVGGRQD 82
+RR K K+ + + A +QD
Sbjct: 286 QNRRTKWRKKHAAEMATAKKKQD 308
>sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1 OS=Homo sapiens GN=NKX6-1 PE=2 SV=2
Length = 367
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 5 ENKVSLEKNIKRRYKTPA----QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWF 60
+ + L+K+ KR++ P Q+ ALEK + + KY ++++A +G+TE QV WF
Sbjct: 225 QGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWF 284
Query: 61 CHRRLK-EKRLSVDEAFVGGRQD 82
+RR K K+ + + A +QD
Sbjct: 285 QNRRTKWRKKHAAEMATAKKKQD 307
>sp|P31264|HMPB_DROME Homeotic protein proboscipedia OS=Drosophila melanogaster GN=pb
PE=2 SV=2
Length = 782
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 11 EKNIKRRYKTP---AQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKE 67
E + RR +T Q++ LEK ++ +KY + ++A + LTE+QV WF +RR+K
Sbjct: 194 ENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKH 253
Query: 68 KRLSV 72
KR ++
Sbjct: 254 KRQTL 258
>sp|P31368|PDM1_DROME Protein nubbin OS=Drosophila melanogaster GN=nub PE=2 SV=1
Length = 601
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 26 ALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL--SVDEAFVGGRQDR 83
ALEK + ++ PT E +Q+A+++ + ++ V WFC+RR KEKR+ S+D G D
Sbjct: 537 ALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLDSP-TGADDDE 595
Query: 84 SS 85
SS
Sbjct: 596 SS 597
>sp|Q1KKZ6|HXADB_TAKRU Homeobox protein Hox-A13b OS=Takifugu rubripes GN=hoxa13b PE=3 SV=1
Length = 285
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70
KR T Q+ LE+ Y +K+ T++ + +++ Q LTE+QV+ WF +RR+KEK++
Sbjct: 222 KRVPYTKVQLKELEREYAANKFITKDKRRRISAQTNLTERQVTIWFQNRRVKEKKV 277
>sp|Q9LMT8|HDG12_ARATH Homeobox-leucine zipper protein HDG12 OS=Arabidopsis thaliana
GN=HDG12 PE=2 SV=1
Length = 687
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 20 TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEK 68
TP Q+ LE +NE ++P E+ ++Q++ ++GL +Q+ WF +RR ++K
Sbjct: 29 TPHQIQRLESTFNECQHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQKK 77
>sp|Q6W990|HXADA_DANRE Homeobox protein Hox-A13a OS=Danio rerio GN=hoxa13a PE=3 SV=2
Length = 310
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 2 HSEENKVSLEKNIKRRYK-TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWF 60
H + S + K+R T Q+ LE+ Y +K+ T++ + +++ Q L+E+QV+ WF
Sbjct: 233 HGGADGSSFRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAQTNLSERQVTIWF 292
Query: 61 CHRRLKEKRL 70
+RR+KEK++
Sbjct: 293 QNRRVKEKKV 302
>sp|O42173|PV1_XENLA Homeobox protein pv.1 OS=Xenopus laevis GN=pv.1 PE=1 SV=1
Length = 282
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 EENKVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHR 63
E K L+++++ + TP Q+ LE+ +N+ +Y + ++A + L+E QV WF +R
Sbjct: 122 ESPKSDLQRHLRTAF-TPQQISKLEQAFNKQRYLGASERKKLATSLRLSEIQVKTWFQNR 180
Query: 64 RLKEKRLSVDE 74
R+K KR D+
Sbjct: 181 RMKLKRQIQDQ 191
>sp|Q91926|VENT1_XENLA Homeobox protein vent1 OS=Xenopus laevis GN=vent1 PE=1 SV=1
Length = 264
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 3 SEENKVSLEKNIKRRYKT---PAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGW 59
+E+ + S + +++RR +T P Q+ LE+ +N+ +Y + ++A + L+E QV W
Sbjct: 117 TEQREKSPKSDLQRRLRTAFTPQQISKLEQAFNKQRYLGAPERKKLATSLQLSEIQVKTW 176
Query: 60 FCHRRLKEKR 69
F +RR+K KR
Sbjct: 177 FQNRRMKLKR 186
>sp|Q69T58|ROC8_ORYSJ Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp.
japonica GN=ROC8 PE=2 SV=2
Length = 710
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 15 KRRYK--TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRR--LKEKRL 70
++RY TP Q+ LE + E +P E ++Q++ ++GL +Q+ WF +RR +K +
Sbjct: 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMKAQHE 75
Query: 71 SVDEAFVGGRQDR 83
D F+ D+
Sbjct: 76 RADNCFLRAENDK 88
>sp|P18111|CDX1_MOUSE Homeobox protein CDX-1 OS=Mus musculus GN=Cdx1 PE=2 SV=2
Length = 268
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 23 QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70
Q + LEK ++ +Y T KS++A +GLTE+QV WF +RR KE+++
Sbjct: 165 QRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKV 212
>sp|P47902|CDX1_HUMAN Homeobox protein CDX-1 OS=Homo sapiens GN=CDX1 PE=2 SV=2
Length = 265
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 23 QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70
Q + LEK ++ +Y T KS++A +GLTE+QV WF +RR KE+++
Sbjct: 165 QRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKV 212
>sp|A2T7H5|CDX1_PONPY Homeobox protein CDX-1 OS=Pongo pygmaeus GN=CDX1 PE=3 SV=1
Length = 265
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 23 QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70
Q + LEK ++ +Y T KS++A +GLTE+QV WF +RR KE+++
Sbjct: 165 QRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKV 212
>sp|O42506|HXA9A_TAKRU Homeobox protein Hox-A9a OS=Takifugu rubripes GN=hoxa9a PE=3 SV=1
Length = 283
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDE 74
KR T Q++ LEK + + Y T + + +VA + LTE+QV WF +RR+K K+ + D
Sbjct: 219 KRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDG 278
Query: 75 A 75
A
Sbjct: 279 A 279
>sp|Q28ET4|VENT1_XENTR Homeobox protein vent1 OS=Xenopus tropicalis GN=vent1 PE=2 SV=1
Length = 262
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 3 SEENKVSLEKNIKRRYKT---PAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGW 59
+E S + +++RR +T P Q+ LE+ +N+ +Y + ++A + L+E QV W
Sbjct: 115 TEHRSKSPKSDLQRRLRTAFTPQQITRLEQAFNKQRYLGASERKKLATSLQLSEIQVKTW 174
Query: 60 FCHRRLKEKRLSVDE 74
F +RR+K KR D+
Sbjct: 175 FQNRRMKLKRQIQDQ 189
>sp|O14627|CDX4_HUMAN Homeobox protein CDX-4 OS=Homo sapiens GN=CDX4 PE=2 SV=1
Length = 284
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 7 KVSLEKNIKRRYK---TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHR 63
+V+ + K +Y+ T Q + LEK ++ ++Y T + KS++A +GL+E+QV WF +R
Sbjct: 165 QVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNR 224
Query: 64 RLKEKRL 70
R KE+++
Sbjct: 225 RAKERKM 231
>sp|Q29013|PO2F2_PIG POU domain, class 2, transcription factor 2 OS=Sus scrofa GN=POU2F2
PE=2 SV=1
Length = 478
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E N++ ALEK + ++ PT E +AEQ+ + ++ + WFC+RR K
Sbjct: 301 RTSIETNVR---------FALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQK 351
Query: 67 EKRL 70
EKR+
Sbjct: 352 EKRI 355
>sp|P17487|HM12_CAEEL Homeobox protein ceh-12 OS=Caenorhabditis elegans GN=ceh-12 PE=4
SV=2
Length = 180
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 34/47 (72%)
Query: 23 QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69
Q++ LEK +++++Y + + Q+A+Q+ L+E Q+ WF +RR+K KR
Sbjct: 121 QLVQLEKQFSDNRYLSRPRRYQLAQQLSLSETQIKIWFQNRRMKNKR 167
>sp|P09086|PO2F2_HUMAN POU domain, class 2, transcription factor 2 OS=Homo sapiens
GN=POU2F2 PE=1 SV=3
Length = 479
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E N++ ALEK + ++ PT E +AEQ+ + ++ + WFC+RR K
Sbjct: 301 RTSIETNVR---------FALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQK 351
Query: 67 EKRL 70
EKR+
Sbjct: 352 EKRI 355
>sp|Q00196|PO2F2_MOUSE POU domain, class 2, transcription factor 2 OS=Mus musculus
GN=Pou2f2 PE=2 SV=4
Length = 463
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66
+ S+E N++ ALEK + ++ PT E +AEQ+ + ++ + WFC+RR K
Sbjct: 285 RTSIETNVR---------FALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQK 335
Query: 67 EKRL 70
EKR+
Sbjct: 336 EKRI 339
>sp|Q07424|CDX4_MOUSE Homeobox protein CDX-4 OS=Mus musculus GN=Cdx4 PE=2 SV=1
Length = 282
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 7 KVSLEKNIKRRYK---TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHR 63
+V+ + K +Y+ T Q + LEK ++ ++Y T KS++A +GL+E+QV WF +R
Sbjct: 163 QVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNR 222
Query: 64 RLKEKRL 70
R KE+++
Sbjct: 223 RAKERKM 229
>sp|Q5JMF3|ROC9_ORYSJ Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp.
japonica GN=ROC9 PE=2 SV=1
Length = 816
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 13 NIKRRYK-----TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKE 67
N KRR K T Q+ +E + E +P E + QV++Q+GL+ +QV WF +RR +
Sbjct: 91 NKKRRRKNYHRHTAEQIRIMEALFKESPHPDERQRQQVSKQLGLSARQVKFWFQNRRTQI 150
Query: 68 K 68
K
Sbjct: 151 K 151
>sp|Q90423|HXB1B_DANRE Homeobox protein Hox-B1b OS=Danio rerio GN=hoxb1b PE=2 SV=3
Length = 307
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 5 ENKVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRR 64
E + ++NI R T Q+ LEK ++ +KY T + +VA + L E QV WF +RR
Sbjct: 201 EYGIHGQQNIIRTNFTTKQLTELEKEFHFNKYLTRARRVEVAATLELNETQVKIWFQNRR 260
Query: 65 LKEKR 69
+K+K+
Sbjct: 261 MKQKK 265
>sp|Q1KL22|HXADA_TAKRU Homeobox protein Hox-A13a OS=Takifugu rubripes GN=hoxa13a PE=3 SV=1
Length = 302
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70
KR T Q+ LE+ Y +K+ T++ + +++ Q L+E+QV+ WF +RR+KEK++
Sbjct: 239 KRVPYTKVQLKELEREYAANKFITKDKRRRISAQTNLSERQVTIWFQNRRVKEKKV 294
>sp|Q00286|PIT1_MOUSE Pituitary-specific positive transcription factor 1 OS=Mus musculus
GN=Pou1f1 PE=1 SV=1
Length = 291
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 15 KRRYKTPAQVMA---LEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70
KR+ +T V A LE+ + EH P+ + ++AE++ L ++ V WFC+RR +EKR+
Sbjct: 214 KRKRRTTISVAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 272
>sp|Q9PWD5|HXA9_MORSA Homeobox protein Hox-A9 OS=Morone saxatilis GN=hoxa9 PE=3 SV=1
Length = 269
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDE 74
KR T Q++ LEK + + Y T + + +VA + LTE+QV WF +RR+K K+ + D
Sbjct: 205 KRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKDG 264
Query: 75 A 75
A
Sbjct: 265 A 265
>sp|Q1KL11|HXA2A_TAKRU Homeobox protein Hox-A2a OS=Takifugu rubripes GN=hoxa2a PE=3 SV=1
Length = 363
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL----- 70
R T Q++ LEK ++ +KY + ++A + LTE+QV WF +RR+K KR
Sbjct: 141 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQSKE 200
Query: 71 ---------SVDEAFVGGRQDRSSGVIQDRGSGLRQDSCGSTKQ 105
S +E +D + V G+ L +D+C K+
Sbjct: 201 NHNAEGKGPSTEEGIHSDEEDEAP-VFDRSGALLERDTCSFQKK 243
>sp|Q9IA15|HXD11_HETFR Homeobox protein Hox-D11 OS=Heterodontus francisci GN=HOXD11 PE=3
SV=1
Length = 265
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 3 SEENKVS--LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWF 60
+E+N +S L KR T Q+ LE+ + + Y +E + Q++ + LT++QV WF
Sbjct: 182 TEKNSLSTALRCRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWF 241
Query: 61 CHRRLKEKRLSVDEA-FVGG 79
+RR+KEK+LS D F G
Sbjct: 242 QNRRMKEKKLSRDRLHFFTG 261
>sp|Q1KKZ2|HXA2B_TAKRU Homeobox protein Hox-A2b OS=Takifugu rubripes GN=hoxa2b PE=3 SV=1
Length = 300
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 16 RRYKTP---AQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69
RR +T Q++ LEK ++ +KY + ++A + LTEKQV WF +RR+K KR
Sbjct: 89 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTEKQVKVWFQNRRMKHKR 145
>sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus francisci GN=HOXD5 PE=3
SV=1
Length = 252
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MH-SEENKVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGW 59
MH ++E LE R T Q + LEK ++ ++Y T + ++A + LTE+Q+ W
Sbjct: 165 MHLNQEGLSGLEGKRTRTAYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW 224
Query: 60 FCHRRLKEKR 69
F +RR+K K+
Sbjct: 225 FQNRRMKWKK 234
>sp|P10178|HMB3_TRIGR Homeobox protein HB3 (Fragment) OS=Tripneustes gratilla PE=3 SV=1
Length = 108
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 20 TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69
T Q + LEK ++ +Y T + ++A+ +GL+E+Q+ WF +RR+K KR
Sbjct: 35 TRQQTLELEKEFHFSRYVTRRRRFEIAQSLGLSERQIKIWFQNRRMKWKR 84
>sp|P31269|HXA9_HUMAN Homeobox protein Hox-A9 OS=Homo sapiens GN=HOXA9 PE=1 SV=4
Length = 272
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDE 74
KR T Q + LEK + + Y T + + +VA + LTE+QV WF +RR+K K+++ D
Sbjct: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
Query: 75 A 75
A
Sbjct: 269 A 269
>sp|Q05095|CDX1_RAT Homeobox protein CDX-1 (Fragment) OS=Rattus norvegicus GN=Cdx1
PE=2 SV=1
Length = 123
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 23 QVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71
Q + LEK ++ +Y T KS++A +GLTE+QV WF +RR KE++++
Sbjct: 16 QRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVN 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,415,369
Number of Sequences: 539616
Number of extensions: 9033854
Number of successful extensions: 20504
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 19034
Number of HSP's gapped (non-prelim): 1594
length of query: 513
length of database: 191,569,459
effective HSP length: 122
effective length of query: 391
effective length of database: 125,736,307
effective search space: 49162896037
effective search space used: 49162896037
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)