Query 010311
Match_columns 513
No_of_seqs 207 out of 1320
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.7 2.4E-17 8.2E-22 134.8 9.2 68 9-76 4-71 (80)
2 2cra_A Homeobox protein HOX-B1 99.7 1.2E-17 4.3E-22 133.2 6.9 64 8-71 3-66 (70)
3 2dmt_A Homeobox protein BARH-l 99.7 1.7E-17 5.9E-22 135.7 7.4 66 6-71 11-76 (80)
4 2dms_A Homeobox protein OTX2; 99.7 2.3E-17 7.9E-22 134.7 8.1 64 8-71 3-66 (80)
5 2dmu_A Homeobox protein goosec 99.7 2.3E-17 8E-22 131.4 7.8 63 9-71 4-66 (70)
6 2kt0_A Nanog, homeobox protein 99.7 1.7E-17 5.7E-22 136.3 7.1 66 6-71 16-81 (84)
7 2dmq_A LIM/homeobox protein LH 99.7 3.1E-17 1.1E-21 133.6 8.5 64 9-72 4-67 (80)
8 2h1k_A IPF-1, pancreatic and d 99.7 2.2E-17 7.5E-22 129.3 6.8 61 11-71 2-62 (63)
9 2vi6_A Homeobox protein nanog; 99.7 1.6E-17 5.3E-22 129.6 5.9 60 11-70 2-61 (62)
10 2da2_A Alpha-fetoprotein enhan 99.7 2.4E-17 8.1E-22 131.2 6.9 64 8-71 3-66 (70)
11 1nk2_P Homeobox protein VND; h 99.7 3.7E-17 1.3E-21 132.9 8.1 66 8-73 5-70 (77)
12 2da1_A Alpha-fetoprotein enhan 99.7 1.7E-17 5.8E-22 132.0 6.0 64 8-71 3-66 (70)
13 2da3_A Alpha-fetoprotein enhan 99.7 2.1E-17 7.2E-22 134.2 6.5 65 7-71 12-76 (80)
14 3a01_A Homeodomain-containing 99.7 3.4E-17 1.2E-21 138.1 7.7 71 4-74 9-79 (93)
15 2djn_A Homeobox protein DLX-5; 99.7 2.6E-17 8.7E-22 131.4 6.2 64 8-71 3-66 (70)
16 2e1o_A Homeobox protein PRH; D 99.7 5E-17 1.7E-21 129.7 7.7 63 9-71 4-66 (70)
17 2hdd_A Protein (engrailed home 99.7 3.1E-17 1.1E-21 127.5 6.4 58 12-69 3-60 (61)
18 1ig7_A Homeotic protein MSX-1; 99.7 5.1E-17 1.8E-21 124.7 7.0 58 13-70 1-58 (58)
19 1puf_A HOX-1.7, homeobox prote 99.7 7.5E-17 2.6E-21 131.0 8.3 65 9-73 10-74 (77)
20 1bw5_A ISL-1HD, insulin gene e 99.7 4.2E-17 1.4E-21 128.6 5.9 61 11-71 2-62 (66)
21 1ahd_P Antennapedia protein mu 99.7 4.1E-17 1.4E-21 129.9 5.5 60 12-71 2-61 (68)
22 1fjl_A Paired protein; DNA-bin 99.7 8.7E-17 3E-21 131.6 7.4 64 8-71 14-77 (81)
23 1zq3_P PRD-4, homeotic bicoid 99.7 8.9E-17 3E-21 127.8 7.2 61 12-72 2-62 (68)
24 1ftt_A TTF-1 HD, thyroid trans 99.7 8E-17 2.7E-21 128.0 6.7 61 12-72 2-62 (68)
25 1yz8_P Pituitary homeobox 2; D 99.7 3.6E-17 1.2E-21 129.9 4.6 62 11-72 2-63 (68)
26 1jgg_A Segmentation protein EV 99.7 8.8E-17 3E-21 124.6 6.7 58 13-70 2-59 (60)
27 2l7z_A Homeobox protein HOX-A1 99.7 8E-17 2.7E-21 129.8 6.7 62 10-71 5-66 (73)
28 1wh5_A ZF-HD homeobox family p 99.7 8.3E-17 2.8E-21 132.8 6.5 61 9-69 14-78 (80)
29 1b8i_A Ultrabithorax, protein 99.7 8E-17 2.7E-21 132.4 6.3 63 9-71 17-79 (81)
30 2da4_A Hypothetical protein DK 99.7 7.1E-17 2.4E-21 131.8 5.6 63 9-71 5-71 (80)
31 3rkq_A Homeobox protein NKX-2. 99.7 1.4E-16 4.8E-21 121.5 6.6 57 12-68 2-58 (58)
32 2m0c_A Homeobox protein arista 99.6 1.4E-16 4.9E-21 127.6 6.9 63 9-71 6-68 (75)
33 2r5y_A Homeotic protein sex co 99.6 1E-16 3.5E-21 133.2 6.2 63 9-71 25-87 (88)
34 1akh_A Protein (mating-type pr 99.6 1.1E-16 3.9E-21 123.9 5.5 59 10-68 3-61 (61)
35 2k40_A Homeobox expressed in E 99.6 1.6E-16 5.3E-21 125.6 6.4 59 13-71 2-60 (67)
36 3a02_A Homeobox protein arista 99.6 1.4E-16 4.7E-21 123.5 5.8 57 15-71 2-58 (60)
37 2hi3_A Homeodomain-only protei 99.6 2.9E-16 9.9E-21 126.4 7.5 59 13-71 3-62 (73)
38 1uhs_A HOP, homeodomain only p 99.6 2.5E-16 8.5E-21 126.3 7.0 59 13-71 2-61 (72)
39 2da5_A Zinc fingers and homeob 99.6 3.2E-16 1.1E-20 127.1 7.3 60 12-71 7-66 (75)
40 1x2n_A Homeobox protein pknox1 99.6 4E-16 1.4E-20 125.2 7.7 64 8-71 3-69 (73)
41 1wh7_A ZF-HD homeobox family p 99.6 2.1E-16 7.1E-21 130.8 5.7 61 8-69 13-78 (80)
42 3a03_A T-cell leukemia homeobo 99.6 3.3E-16 1.1E-20 120.2 6.3 54 17-70 2-55 (56)
43 1b72_A Protein (homeobox prote 99.6 2.9E-16 1E-20 132.8 6.6 63 10-72 32-94 (97)
44 2cuf_A FLJ21616 protein; homeo 99.6 5.2E-16 1.8E-20 130.8 7.7 65 8-72 3-82 (95)
45 1b72_B Protein (PBX1); homeodo 99.6 3.3E-16 1.1E-20 129.3 6.3 62 13-74 2-66 (87)
46 2ly9_A Zinc fingers and homeob 99.6 4.5E-16 1.5E-20 125.0 6.8 61 11-71 5-65 (74)
47 2ecc_A Homeobox and leucine zi 99.6 4.9E-16 1.7E-20 128.4 6.8 58 14-71 5-62 (76)
48 2dn0_A Zinc fingers and homeob 99.6 3.7E-16 1.3E-20 126.6 5.9 62 10-71 6-67 (76)
49 1puf_B PRE-B-cell leukemia tra 99.6 7.4E-16 2.5E-20 123.6 7.1 60 13-72 2-64 (73)
50 2ecb_A Zinc fingers and homeob 99.6 8E-16 2.7E-20 130.2 7.1 57 16-72 15-71 (89)
51 1du6_A PBX1, homeobox protein 99.6 5.2E-16 1.8E-20 121.4 5.2 59 11-69 2-63 (64)
52 3nar_A ZHX1, zinc fingers and 99.6 8.5E-16 2.9E-20 129.9 6.5 63 9-71 22-84 (96)
53 1k61_A Mating-type protein alp 99.6 1.2E-15 4.1E-20 118.0 6.3 56 15-70 1-59 (60)
54 2dmn_A Homeobox protein TGIF2L 99.6 2.1E-15 7.1E-20 124.8 8.2 64 8-71 3-69 (83)
55 1mnm_C Protein (MAT alpha-2 tr 99.6 2.4E-15 8.1E-20 124.8 6.8 60 10-69 25-87 (87)
56 2dmp_A Zinc fingers and homeob 99.6 2.8E-15 9.4E-20 125.6 7.2 59 14-72 15-73 (89)
57 1le8_B Mating-type protein alp 99.6 3.3E-15 1.1E-19 123.2 7.2 60 13-72 3-65 (83)
58 1au7_A Protein PIT-1, GHF-1; c 99.6 1.9E-15 6.4E-20 137.0 6.0 62 9-70 84-145 (146)
59 2xsd_C POU domain, class 3, tr 99.6 1.6E-15 5.3E-20 140.2 5.5 65 8-72 95-159 (164)
60 1e3o_C Octamer-binding transcr 99.6 2E-15 6.9E-20 138.4 6.0 61 10-70 99-159 (160)
61 2da6_A Hepatocyte nuclear fact 99.6 7.7E-15 2.6E-19 127.4 8.9 68 9-76 3-91 (102)
62 3d1n_I POU domain, class 6, tr 99.6 4.4E-15 1.5E-19 134.6 7.3 61 9-69 90-150 (151)
63 2cqx_A LAG1 longevity assuranc 99.5 2E-15 6.8E-20 122.3 4.2 60 12-71 8-68 (72)
64 1wi3_A DNA-binding protein SAT 99.5 1.6E-14 5.5E-19 117.8 6.7 61 8-68 3-64 (71)
65 2l9r_A Homeobox protein NKX-3. 99.5 9.2E-15 3.2E-19 118.2 5.1 55 17-71 9-63 (69)
66 3nau_A Zinc fingers and homeob 99.5 1.5E-14 5E-19 116.9 6.0 53 19-71 11-63 (66)
67 1lfb_A Liver transcription fac 99.5 8.3E-15 2.8E-19 125.9 4.9 64 9-72 6-90 (99)
68 3l1p_A POU domain, class 5, tr 99.5 1.3E-14 4.3E-19 132.6 6.2 61 10-70 94-154 (155)
69 1x2m_A LAG1 longevity assuranc 99.5 1.1E-14 3.6E-19 116.8 4.0 52 20-71 8-60 (64)
70 2e19_A Transcription factor 8; 99.5 1.9E-14 6.6E-19 114.2 5.2 55 16-70 7-61 (64)
71 2d5v_A Hepatocyte nuclear fact 99.5 1.8E-14 6.1E-19 131.7 5.4 63 9-71 94-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.4 1.2E-13 4.1E-18 110.1 5.7 57 17-73 3-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.3 1.1E-12 3.9E-17 124.6 2.7 60 10-69 113-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.2 2E-11 6.7E-16 103.7 7.9 59 16-74 9-70 (89)
75 2h8r_A Hepatocyte nuclear fact 99.1 2.3E-11 8E-16 118.0 5.5 59 9-67 139-218 (221)
76 2da7_A Zinc finger homeobox pr 99.1 3E-11 1E-15 98.8 5.2 46 21-66 14-59 (71)
77 1mh3_A Maltose binding-A1 home 99.1 2.1E-11 7.3E-16 121.1 4.5 55 14-68 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.1 5.9E-07 2E-11 65.2 0.7 21 54-74 1-21 (37)
79 2ys9_A Homeobox and leucine zi 91.9 0.13 4.4E-06 42.1 3.7 43 20-62 14-56 (70)
80 1hlv_A CENP-B, major centromer 57.9 19 0.00067 30.0 6.0 49 14-65 3-51 (131)
81 2glo_A Brinker CG9653-PA; prot 55.6 12 0.00041 27.8 3.8 45 16-61 3-47 (59)
82 2elh_A CG11849-PA, LD40883P; s 55.3 21 0.00071 28.5 5.5 47 10-61 14-60 (87)
83 3hug_A RNA polymerase sigma fa 54.3 18 0.00062 28.8 5.0 50 18-72 37-86 (92)
84 1jko_C HIN recombinase, DNA-in 44.3 15 0.00051 25.1 2.7 42 18-64 5-46 (52)
85 3mzy_A RNA polymerase sigma-H 43.9 34 0.0012 28.5 5.3 49 18-72 109-157 (164)
86 2p7v_B Sigma-70, RNA polymeras 43.1 31 0.0011 25.8 4.5 52 18-70 5-56 (68)
87 1tc3_C Protein (TC3 transposas 42.5 44 0.0015 22.1 4.8 40 18-62 5-44 (51)
88 1je8_A Nitrate/nitrite respons 42.2 28 0.00097 27.4 4.3 49 16-70 19-67 (82)
89 2o8x_A Probable RNA polymerase 41.1 24 0.00082 26.0 3.5 48 18-70 15-62 (70)
90 3c57_A Two component transcrip 40.1 40 0.0014 27.3 5.0 47 18-70 27-73 (95)
91 1fse_A GERE; helix-turn-helix 39.3 42 0.0014 24.9 4.7 48 16-69 9-56 (74)
92 1p4w_A RCSB; solution structur 39.2 44 0.0015 27.8 5.2 47 16-68 32-78 (99)
93 1x3u_A Transcriptional regulat 37.5 30 0.001 26.2 3.7 47 18-70 16-62 (79)
94 1ku3_A Sigma factor SIGA; heli 35.7 56 0.0019 24.8 4.9 50 18-68 10-59 (73)
95 2lv7_A Calcium-binding protein 34.8 51 0.0017 26.8 4.9 47 15-61 26-79 (100)
96 2jn6_A Protein CGL2762, transp 32.7 57 0.0019 26.0 4.7 42 16-61 3-45 (97)
97 2rnj_A Response regulator prot 31.3 33 0.0011 27.3 3.1 48 17-70 28-75 (91)
98 1tty_A Sigma-A, RNA polymerase 31.3 61 0.0021 25.6 4.7 52 18-70 18-69 (87)
99 2pmy_A RAS and EF-hand domain- 27.5 42 0.0014 26.0 3.0 45 17-61 19-68 (91)
100 1rp3_A RNA polymerase sigma fa 27.3 43 0.0015 29.8 3.5 49 18-71 187-235 (239)
101 3ulq_B Transcriptional regulat 26.7 85 0.0029 25.4 4.8 47 14-66 25-71 (90)
102 1fi6_A EH domain protein REPS1 26.6 62 0.0021 25.4 3.9 44 18-61 2-50 (92)
103 1iuf_A Centromere ABP1 protein 25.3 91 0.0031 27.1 5.1 50 13-62 6-59 (144)
104 1c07_A Protein (epidermal grow 24.1 62 0.0021 25.6 3.5 43 19-61 4-51 (95)
105 1s7o_A Hypothetical UPF0122 pr 23.6 1.2E+02 0.0043 25.5 5.5 49 18-71 22-70 (113)
106 3i5g_B Myosin regulatory light 22.8 1.2E+02 0.004 26.0 5.3 41 14-54 5-50 (153)
107 2rn7_A IS629 ORFA; helix, all 22.5 1.1E+02 0.0037 24.7 4.8 46 16-61 4-52 (108)
108 1or7_A Sigma-24, RNA polymeras 21.6 78 0.0027 27.3 3.9 48 19-71 141-188 (194)
109 1j7q_A CAVP, calcium vector pr 20.8 1.5E+02 0.0051 22.1 4.9 46 16-61 5-60 (86)
110 1xsv_A Hypothetical UPF0122 pr 20.5 1.3E+02 0.0044 25.3 4.9 49 18-71 25-73 (113)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.4e-17 Score=134.85 Aligned_cols=68 Identities=28% Similarity=0.374 Sum_probs=63.0
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhhhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDEAF 76 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk~e~~ 76 (513)
....++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 46778899999999999999999999999999999999999999999999999999999998755543
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=133.19 Aligned_cols=64 Identities=28% Similarity=0.467 Sum_probs=60.7
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...+.+++|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 3567788999999999999999999999999999999999999999999999999999999975
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=135.67 Aligned_cols=66 Identities=30% Similarity=0.463 Sum_probs=61.6
Q ss_pred ccCCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 6 NKVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 6 nk~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
+....+.++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+||..
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 344567788999999999999999999999999999999999999999999999999999999975
No 4
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=2.3e-17 Score=134.74 Aligned_cols=64 Identities=31% Similarity=0.444 Sum_probs=60.9
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...+.++.|+.||..|+.+||..|..++||+..++.+||.+|||++++|++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999986
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=131.40 Aligned_cols=63 Identities=33% Similarity=0.499 Sum_probs=60.1
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
....++.|+.||..|+.+||.+|..++||+..++.+||.+|||++.||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 456788999999999999999999999999999999999999999999999999999999975
No 6
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=136.32 Aligned_cols=66 Identities=27% Similarity=0.479 Sum_probs=62.2
Q ss_pred ccCCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 6 NKVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 6 nk~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
+....+.++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999999999999999999999999999999999999999975
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=133.57 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=60.7
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
..+.++.|+.||..|+.+||.+|..++||+..++.+||.+|||+++||++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999863
No 8
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.69 E-value=2.2e-17 Score=129.30 Aligned_cols=61 Identities=31% Similarity=0.440 Sum_probs=56.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 11 EKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 11 kkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
..++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 9
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.69 E-value=1.6e-17 Score=129.58 Aligned_cols=60 Identities=30% Similarity=0.453 Sum_probs=53.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 11 EKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 11 kkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
++++.|+.||..|+.+||..|..++||+..++.+||..|||++.||++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467899999999999999999999999999999999999999999999999999999986
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=131.16 Aligned_cols=64 Identities=20% Similarity=0.394 Sum_probs=60.6
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...+.++.|+.||..|+.+||..|..++||+..++.+||..|||++.||++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3467788999999999999999999999999999999999999999999999999999999975
No 11
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=3.7e-17 Score=132.86 Aligned_cols=66 Identities=30% Similarity=0.439 Sum_probs=61.7
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVD 73 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk~ 73 (513)
...++++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 356778899999999999999999999999999999999999999999999999999999997643
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=132.03 Aligned_cols=64 Identities=23% Similarity=0.425 Sum_probs=60.7
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...+.++.|+.||..|+.+||..|+.++||+..++.+||..|||++.||++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 3467788999999999999999999999999999999999999999999999999999999975
No 13
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=134.16 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=61.1
Q ss_pred cCCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 7 KVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 7 k~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
....++++.|+.||..|+.+||.+|..++||+..++.+||.+|||+++||++||||||+|+||..
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34567888999999999999999999999999999999999999999999999999999999975
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=3.4e-17 Score=138.08 Aligned_cols=71 Identities=30% Similarity=0.457 Sum_probs=64.7
Q ss_pred CcccCCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhhhh
Q 010311 4 EENKVSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDE 74 (513)
Q Consensus 4 eenk~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk~e 74 (513)
..+....++++.|+.||..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|||+.....
T Consensus 9 ~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 9 YQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp STTSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999986443
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=131.38 Aligned_cols=64 Identities=25% Similarity=0.392 Sum_probs=60.5
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...+.++.|+.||..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+||..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3567788999999999999999999999999999999999999999999999999999999874
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=5e-17 Score=129.70 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=59.8
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
+...++.|+.||..|+.+||.+|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 456778899999999999999999999999999999999999999999999999999999975
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.68 E-value=3.1e-17 Score=127.49 Aligned_cols=58 Identities=31% Similarity=0.546 Sum_probs=53.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhh
Q 010311 12 KNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69 (513)
Q Consensus 12 kRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR 69 (513)
+++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999997
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=5.1e-17 Score=124.70 Aligned_cols=58 Identities=36% Similarity=0.543 Sum_probs=55.8
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 13 NIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
+++|+.||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+||.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999973
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=7.5e-17 Score=131.02 Aligned_cols=65 Identities=35% Similarity=0.460 Sum_probs=61.0
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVD 73 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk~ 73 (513)
.++.++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 35677899999999999999999999999999999999999999999999999999999998744
No 20
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=4.2e-17 Score=128.56 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=58.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 11 EKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 11 kkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
++++.|+.||..|+.+||.+|..++||+..++.+||..+||++.||++||||||+|+|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678999999999999999999999999999999999999999999999999999999864
No 21
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.67 E-value=4.1e-17 Score=129.92 Aligned_cols=60 Identities=32% Similarity=0.491 Sum_probs=58.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 12 KNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 12 kRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
+++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 478899999999999999999999999999999999999999999999999999999986
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.67 E-value=8.7e-17 Score=131.61 Aligned_cols=64 Identities=22% Similarity=0.438 Sum_probs=59.2
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
..+++++.|+.||..|+.+||.+|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3467788999999999999999999999999999999999999999999999999999999975
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=8.9e-17 Score=127.77 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=58.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 12 KNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 12 kRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
+++.|+.||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999999863
No 24
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=8e-17 Score=128.02 Aligned_cols=61 Identities=33% Similarity=0.473 Sum_probs=58.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 12 KNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 12 kRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
+++.|+.||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999999863
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.66 E-value=3.6e-17 Score=129.86 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=59.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 11 EKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 11 kkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
++++.|+.||..|+.+||..|..++||+..++.+||..|||++.||++||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 56789999999999999999999999999999999999999999999999999999999863
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=8.8e-17 Score=124.57 Aligned_cols=58 Identities=31% Similarity=0.472 Sum_probs=55.7
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 13 NIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
++.|+.||..|+.+||..|..++||+..++.+||..|||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.66 E-value=8e-17 Score=129.82 Aligned_cols=62 Identities=35% Similarity=0.554 Sum_probs=59.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.+.+++|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 46688999999999999999999999999999999999999999999999999999999975
No 28
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=8.3e-17 Score=132.77 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=58.0
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNE----HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fek----n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR 69 (513)
..++|+.||.||..|+..||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567889999999999999999999 999999999999999999999999999999999886
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.66 E-value=8e-17 Score=132.37 Aligned_cols=63 Identities=30% Similarity=0.427 Sum_probs=55.0
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.+++++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+||..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 356788999999999999999999999999999999999999999999999999999999975
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.1e-17 Score=131.84 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=59.9
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEH----KYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn----~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
..+.++.|+.||..|+.+||.+|+.+ +||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 46778899999999999999999999 9999999999999999999999999999999999964
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=121.45 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=54.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHh
Q 010311 12 KNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEK 68 (513)
Q Consensus 12 kRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~K 68 (513)
+++.|+.|+..|+.+||..|..++||+..++.+||..|||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 32
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=127.58 Aligned_cols=63 Identities=32% Similarity=0.427 Sum_probs=59.9
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.+++++.|+.||..|+.+||..|..++||+..++.+||..|||++.+|++||||||+|+|+..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999975
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.65 E-value=1e-16 Score=133.23 Aligned_cols=63 Identities=32% Similarity=0.453 Sum_probs=55.7
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.++.++.|+.||..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 456788999999999999999999999999999999999999999999999999999999864
No 34
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.64 E-value=1.1e-16 Score=123.94 Aligned_cols=59 Identities=24% Similarity=0.403 Sum_probs=48.6
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEK 68 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~K 68 (513)
.+.++.|+.|+..|+.+||.+|..++||+..++.+||..|||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46778899999999999999999999999999999999999999999999999999976
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=125.65 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=57.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 13 NIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
+++|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 67899999999999999999999999999999999999999999999999999999875
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.64 E-value=1.4e-16 Score=123.46 Aligned_cols=57 Identities=32% Similarity=0.482 Sum_probs=50.8
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 15 kRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.|+.||..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 589999999999999999999999999999999999999999999999999999875
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=2.9e-16 Score=126.38 Aligned_cols=59 Identities=31% Similarity=0.357 Sum_probs=56.5
Q ss_pred CCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 13 NIKRRYKTPAQVMALEKFYNE-HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~Fek-n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.++|+.||..|+.+||..|.. ++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999995 99999999999999999999999999999999999975
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=2.5e-16 Score=126.27 Aligned_cols=59 Identities=31% Similarity=0.366 Sum_probs=56.4
Q ss_pred CCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 13 NIKRRYKTPAQVMALEKFYNE-HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~Fek-n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.++|+.||..|+.+||..|.. ++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999975
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=127.11 Aligned_cols=60 Identities=23% Similarity=0.450 Sum_probs=56.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 12 KNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 12 kRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
..++|+.||..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 345778899999999999999999999999999999999999999999999999999985
No 40
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=4e-16 Score=125.16 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=60.0
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNE---HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fek---n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...+.+++|+.|+..|+.+||.+|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 34677889999999999999999977 99999999999999999999999999999999999975
No 41
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=2.1e-16 Score=130.77 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=57.3
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNE-----HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fek-----n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR 69 (513)
...+++|.||.||..|+..|| .|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345778899999999999999 7999 999999999999999999999999999999999886
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=120.20 Aligned_cols=54 Identities=30% Similarity=0.492 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 17 RYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 17 T~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
|.||..|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999986
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2.9e-16 Score=132.78 Aligned_cols=63 Identities=30% Similarity=0.395 Sum_probs=56.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
...++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 467788999999999999999999999999999999999999999999999999999999763
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=5.2e-16 Score=130.81 Aligned_cols=65 Identities=25% Similarity=0.411 Sum_probs=61.5
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhchhhhHhhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIG---------------LTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLG---------------LSerQVqVWFQNRRaK~KR~kk 72 (513)
...++++.|+.|+..|+.+||.+|+.++||+..+|.+||..|| |++.+|++||||||+|+|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999999999999999 9999999999999999999864
No 45
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=3.3e-16 Score=129.31 Aligned_cols=62 Identities=31% Similarity=0.510 Sum_probs=58.0
Q ss_pred CCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhhhh
Q 010311 13 NIKRRYKTPAQVMALEKFY---NEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDE 74 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~F---ekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk~e 74 (513)
|++|+.|+..|+.+|+.+| ..++||+..++.+||.++||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999987444
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=125.01 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 11 EKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 11 kkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
..++.|+.||..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4567899999999999999999999999999999999999999999999999999999975
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=4.9e-16 Score=128.37 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=55.1
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 14 IKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 14 RkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.+|+.||.+|+.+|+.+|..++||+..+|.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 4567799999999999999999999999999999999999999999999999999875
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-16 Score=126.63 Aligned_cols=62 Identities=23% Similarity=0.454 Sum_probs=58.0
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
....+.|+.||..|+.+||.+|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34456799999999999999999999999999999999999999999999999999999975
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=7.4e-16 Score=123.62 Aligned_cols=60 Identities=32% Similarity=0.546 Sum_probs=57.5
Q ss_pred CCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 13 NIKRRYKTPAQVMALEKFY---NEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~F---ekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
+++|+.|+..|+.+|+.+| ..++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6789999999999999999 99999999999999999999999999999999999998763
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=8e-16 Score=130.16 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=53.9
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
...||..||.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.+
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999998753
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=5.2e-16 Score=121.43 Aligned_cols=59 Identities=31% Similarity=0.599 Sum_probs=56.2
Q ss_pred CCCCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhh
Q 010311 11 EKNIKRRYKTPAQVMALEKFY---NEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69 (513)
Q Consensus 11 kkRRkRT~FT~~QLevLEk~F---ekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR 69 (513)
..+++|+.|+..|+.+|+.+| ..++||+..++.+||..+||++.||++||||||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 356789999999999999999 99999999999999999999999999999999999987
No 52
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.60 E-value=8.5e-16 Score=129.90 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=56.7
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
....+++|+.||..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 345667899999999999999999999999999999999999999999999999999999975
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.59 E-value=1.2e-15 Score=118.02 Aligned_cols=56 Identities=23% Similarity=0.411 Sum_probs=53.9
Q ss_pred CCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 15 KRRYKTPAQVMALEKFYNE---HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 15 kRT~FT~~QLevLEk~Fek---n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
+|+.|+..|+.+||.+|.. ++||+..++.+||.++||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 9999999999999999999999999999999999985
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=124.78 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=59.5
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNE---HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fek---n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...+++++|+.|+..|+.+|+.+|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 34677889999999999999999987 59999999999999999999999999999999999875
No 55
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.57 E-value=2.4e-15 Score=124.78 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=56.7
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNE---HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fek---n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR 69 (513)
.+++++|+.|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 456778999999999999999999 999999999999999999999999999999999973
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=125.64 Aligned_cols=59 Identities=24% Similarity=0.419 Sum_probs=54.8
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 14 IKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 14 RkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
.++..||..||.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|+...
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 34455999999999999999999999999999999999999999999999999999763
No 57
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.57 E-value=3.3e-15 Score=123.22 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=55.2
Q ss_pred CCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 13 NIKRRYKTPAQVMALEKFYNE---HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~Fek---n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
+++|++|+..|+.+||.+|.. ++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456777999999999999999 999999999999999999999999999999999999753
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=1.9e-15 Score=137.01 Aligned_cols=62 Identities=34% Similarity=0.576 Sum_probs=56.0
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
..+++++|+.||..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999986
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.56 E-value=1.6e-15 Score=140.16 Aligned_cols=65 Identities=29% Similarity=0.416 Sum_probs=52.6
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
...++|++|+.||..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+||...
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 34678889999999999999999999999999999999999999999999999999999999863
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.56 E-value=2e-15 Score=138.36 Aligned_cols=61 Identities=34% Similarity=0.506 Sum_probs=55.1
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
.++|++|+.||..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 5778899999999999999999999999999999999999999999999999999999985
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=127.35 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=62.6
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhchhhhH
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQI---------------------GLTEKQVSGWFCHRRLKE 67 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eL---------------------GLSerQVqVWFQNRRaK~ 67 (513)
++++|+.|+.|++.|+.+||..|+.++||+..+|++||..| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 46788899999999999999999999999999999999999 799999999999999999
Q ss_pred hhhhhhhhh
Q 010311 68 KRLSVDEAF 76 (513)
Q Consensus 68 KR~kk~e~~ 76 (513)
|++.+....
T Consensus 83 kr~~~~~~~ 91 (102)
T 2da6_A 83 AFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHS
T ss_pred HHhhHhhhc
Confidence 998755533
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=134.62 Aligned_cols=61 Identities=25% Similarity=0.464 Sum_probs=58.5
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR 69 (513)
..++|++|+.|+..|+.+||.+|..++||+..+|.+||.+|||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4577889999999999999999999999999999999999999999999999999999987
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=2e-15 Score=122.27 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=55.6
Q ss_pred CCCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 12 KNIKRRYKTPAQVMALEKFY-NEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 12 kRRkRT~FT~~QLevLEk~F-ekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
..+.|+.++..|+.+||..| ..++||+..+|.+||.+|||+++||++||||||+|||+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34567788999999999999 9999999999999999999999999999999999999864
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.6e-14 Score=117.81 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=56.9
Q ss_pred CCcCCCCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHh
Q 010311 8 VSLEKNIKRRYKTPAQVMALEKFYNE-HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEK 68 (513)
Q Consensus 8 ~srkkRRkRT~FT~~QLevLEk~Fek-n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~K 68 (513)
..++++|.||.|+.+||.+|+.+|+. ++||+...|..||.+|||++++|++||||||.-.+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 35678899999999999999999999 99999999999999999999999999999997644
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.51 E-value=9.2e-15 Score=118.17 Aligned_cols=55 Identities=35% Similarity=0.554 Sum_probs=52.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 17 RYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 17 T~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...|..|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999999999875
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=116.93 Aligned_cols=53 Identities=23% Similarity=0.457 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 19 KTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 19 FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.|.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|||+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999864
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.51 E-value=8.3e-15 Score=125.87 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=54.2
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhchhhhH
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQ------------------IG---LTEKQVSGWFCHRRLKE 67 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~e------------------LG---LSerQVqVWFQNRRaK~ 67 (513)
.++.++.|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3567889999999999999999999999999999999999 88 99999999999999999
Q ss_pred hhhhh
Q 010311 68 KRLSV 72 (513)
Q Consensus 68 KR~kk 72 (513)
|++..
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 87753
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.50 E-value=1.3e-14 Score=132.58 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=58.1
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
.++||+|+.|+..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5678899999999999999999999999999999999999999999999999999999985
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=1.1e-14 Score=116.79 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 20 TPAQVMALEKFY-NEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 20 T~~QLevLEk~F-ekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
...|+.+||..| ..++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 356899999999 6799999999999999999999999999999999999753
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=114.21 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=51.3
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
+...+..|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 4556799999999999999999999999999999999999999999999988764
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.48 E-value=1.8e-14 Score=131.74 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=55.2
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
..+.|++|+.||..|+.+||.+|..++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 346788999999999999999999999999999999999999999999999999999999875
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=1.2e-13 Score=110.12 Aligned_cols=57 Identities=30% Similarity=0.458 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhhh
Q 010311 17 RYKTPAQVMALEKFYN---EHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVD 73 (513)
Q Consensus 17 T~FT~~QLevLEk~Fe---kn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk~ 73 (513)
..|+.+|+.+|+.+|. .++||+..++.+||..+||+++||++||||||+|+|+....
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3799999999999999 99999999999999999999999999999999999987643
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.26 E-value=1.1e-12 Score=124.64 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=53.8
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhchhhhHh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIG---------------------LTEKQVSGWFCHRRLKEK 68 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLG---------------------LSerQVqVWFQNRRaK~K 68 (513)
+++||.|+.|+..|+.+||..|..++||+..+|++||..|+ |++.+|++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 56788999999999999999999999999999999999999 999999999999999876
Q ss_pred h
Q 010311 69 R 69 (513)
Q Consensus 69 R 69 (513)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.22 E-value=2e-11 Score=103.75 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=54.2
Q ss_pred CccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhhhh
Q 010311 16 RRYKTPAQVMALEKFYNE---HKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSVDE 74 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fek---n~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk~e 74 (513)
-..|+..++.+|+.+|.. ++||+..+|.+||.++||++.||++||+|+|.|+++.....
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 357999999999999977 99999999999999999999999999999999999876444
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=117.96 Aligned_cols=59 Identities=29% Similarity=0.445 Sum_probs=53.4
Q ss_pred CcCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhchhhhH
Q 010311 9 SLEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIG---------------------LTEKQVSGWFCHRRLKE 67 (513)
Q Consensus 9 srkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLG---------------------LSerQVqVWFQNRRaK~ 67 (513)
.++.||.|+.|++.|+.+|+.+|..++||+..+|++||..|| |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 457788999999999999999999999999999999999998 89999999999999764
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=98.85 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhh
Q 010311 21 PAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66 (513)
Q Consensus 21 ~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK 66 (513)
.+|+.+|+..|..+++|+..++..||..+||+.++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999973
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.13 E-value=2.1e-11 Score=121.11 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=52.3
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHh
Q 010311 14 IKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEK 68 (513)
Q Consensus 14 RkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~K 68 (513)
+.|+.|+..|+..||+.|+.++||+..+|.+||.+|||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4567899999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.09 E-value=5.9e-07 Score=65.19 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=18.5
Q ss_pred hhhhhhhhchhhhHhhhhhhh
Q 010311 54 KQVSGWFCHRRLKEKRLSVDE 74 (513)
Q Consensus 54 rQVqVWFQNRRaK~KR~kk~e 74 (513)
+||+|||||||+||||.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987553
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.89 E-value=0.13 Score=42.14 Aligned_cols=43 Identities=26% Similarity=0.510 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhc
Q 010311 20 TPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCH 62 (513)
Q Consensus 20 T~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQN 62 (513)
++.-.++|+..|...+.+.......|..+..|+..||+.||-.
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3444689999999999999999999999999999999999953
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=57.87 E-value=19 Score=30.01 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=37.9
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhh
Q 010311 14 IKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRL 65 (513)
Q Consensus 14 RkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRa 65 (513)
++|..+|.++...+-..+..+...+. .+||..+|++...|..|..++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 36788999998777777755665543 36899999999999999876554
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=55.61 E-value=12 Score=27.81 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=31.2
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 010311 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFC 61 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQ 61 (513)
|..|+.++...+...+.. .........++|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 457888887666444443 332122256899999999999999975
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=55.34 E-value=21 Score=28.52 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=33.2
Q ss_pred cCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 010311 10 LEKNIKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFC 61 (513)
Q Consensus 10 rkkRRkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQ 61 (513)
.++++.+..++.++....-..+.. .. ...+||.++|++...|..|..
T Consensus 14 ~~~~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 14 TKGKRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 344456778898886555555542 22 256789999999999999974
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.26 E-value=18 Score=28.82 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
.++..|..+|...|-.. ..-.+||..+|++...|+.+...-|.+.|+...
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 46778888887765322 136789999999999999999877777776653
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=44.26 E-value=15 Score=25.12 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRR 64 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRR 64 (513)
.++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35555555555555432 2 356789999999999999986543
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.86 E-value=34 Score=28.49 Aligned_cols=49 Identities=10% Similarity=-0.001 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLSV 72 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~kk 72 (513)
.++..|..+|. .|- .. ..-.++|..+|++...|+.+...-+.+.|+...
T Consensus 109 ~L~~~~r~v~~-~~~-~g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-RG----YSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHT-TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-cC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46667777776 332 22 246789999999999999999877777666543
No 86
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.15 E-value=31 Score=25.83 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
.+++.+..+|...|-...+- ...-.++|..+|++...|+.+...-+.|.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47889999999888321111 12346789999999999999887655555544
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.49 E-value=44 Score=22.15 Aligned_cols=40 Identities=5% Similarity=0.023 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhc
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCH 62 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQN 62 (513)
.++..+...+...+.. .. ...+||..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4667766555455542 22 2567899999999999999853
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.18 E-value=28 Score=27.42 Aligned_cols=49 Identities=20% Similarity=0.085 Sum_probs=36.9
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
-..++..|.++|...++ . ..-.++|..+|++...|+.+..+-+.|.+..
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 34689999999988532 2 2467899999999999999887666555543
No 89
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.07 E-value=24 Score=25.96 Aligned_cols=48 Identities=15% Similarity=-0.154 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
.+++.+..+|...|-.. ..-.++|..+|++...|+.|...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888999998876322 2356899999999999999987666655544
No 90
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.06 E-value=40 Score=27.26 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
.++..|+++|...++-.. ..++|..+|++...|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 589999999988644332 47899999999999999887655555443
No 91
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.25 E-value=42 Score=24.88 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=36.2
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhh
Q 010311 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR 69 (513)
-..++..|..+|...+ ..+ ...++|..+|++...|..+..+-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4568999999998843 233 35689999999999999998765555444
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=39.15 E-value=44 Score=27.77 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=36.5
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHh
Q 010311 16 RRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEK 68 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~K 68 (513)
...+|..|+++|...++-.. -.+||..+|+++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45699999999988664332 478999999999999999876555543
No 93
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.47 E-value=30 Score=26.20 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
.+++.+..+|...+. .+ ...++|..+|++...|+.+..+-+.|.+..
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 367888888877432 22 245899999999999999987666665543
No 94
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.66 E-value=56 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEK 68 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~K 68 (513)
.+++.+..+|...|-.... ....-.++|..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4789999999998842100 0122468899999999999999876665555
No 95
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=34.77 E-value=51 Score=26.83 Aligned_cols=47 Identities=4% Similarity=0.094 Sum_probs=38.6
Q ss_pred CCccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhC--CChhhhhhhhh
Q 010311 15 KRRYKTPAQVMALEKFYN-----EHKYPTEEMKSQVAEQIG--LTEKQVSGWFC 61 (513)
Q Consensus 15 kRT~FT~~QLevLEk~Fe-----kn~YPS~~eReeLA~eLG--LSerQVqVWFQ 61 (513)
....++.+|+..|..+|. .+.+.+..+...+...+| +++.+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345689999999999994 568899999999888887 57788888774
No 96
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=32.71 E-value=57 Score=26.00 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=29.9
Q ss_pred CccCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCChhhhhhhhh
Q 010311 16 RRYKTPAQVMALEKFYNEH-KYPTEEMKSQVAEQIGLTEKQVSGWFC 61 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fekn-~YPS~~eReeLA~eLGLSerQVqVWFQ 61 (513)
|..|+.++....-..+... .. ...++|..+|++...|..|.+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 4568888776555555322 22 366899999999999999974
No 97
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.30 E-value=33 Score=27.30 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=35.6
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 17 RYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 17 T~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
..++..+..+|...++ .+ .-.++|..+|++...|+.+..+-+.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4588999999988543 22 235789999999999999987666555443
No 98
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.27 E-value=61 Score=25.60 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRL 70 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~ 70 (513)
.+++.+..+|...|-...- ....-.+||..+|++...|+.|...-+.|.|..
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4788899999888742100 012356789999999999999987666665544
No 99
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.52 E-value=42 Score=26.02 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=37.8
Q ss_pred ccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 010311 17 RYKTPAQVMALEKFYN-----EHKYPTEEMKSQVAEQIGLTEKQVSGWFC 61 (513)
Q Consensus 17 T~FT~~QLevLEk~Fe-----kn~YPS~~eReeLA~eLGLSerQVqVWFQ 61 (513)
..++..++..|...|. .+.+.+..+...+...+|++..+|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4578889999999984 46788999999988999999998888874
No 100
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.28 E-value=43 Score=29.78 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.+++.|..+|...|-.. ....+||..+|++...|+.+...-+.+.|+..
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36677777777766321 23568899999999999999887777666653
No 101
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.67 E-value=85 Score=25.38 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhh
Q 010311 14 IKRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLK 66 (513)
Q Consensus 14 RkRT~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK 66 (513)
.....+|..++.+|.-.++-. ...+||..||++++.|+...++=+.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344579999999998876322 36789999999999999887654444
No 102
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.58 E-value=62 Score=25.43 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 010311 18 YKTPAQVMALEKFYN-----EHKYPTEEMKSQVAEQIGLTEKQVSGWFC 61 (513)
Q Consensus 18 ~FT~~QLevLEk~Fe-----kn~YPS~~eReeLA~eLGLSerQVqVWFQ 61 (513)
.++.+++..+...|. .+.+.+..+...+...+|++..++..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467889999999995 36778888888888889999888877764
No 103
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=25.31 E-value=91 Score=27.11 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhc
Q 010311 13 NIKRRYKTPAQVMALEKFY-NEHKYPTEEMKSQVAE-QI--GLTEKQVSGWFCH 62 (513)
Q Consensus 13 RRkRT~FT~~QLevLEk~F-ekn~YPS~~eReeLA~-eL--GLSerQVqVWFQN 62 (513)
+++|..+|-+|...+-..+ +.++-.+..+....|. ++ +++...|..|..+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5789999999999999999 6788777665555332 56 7788888888754
No 104
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.08 E-value=62 Score=25.65 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCChhhhhhhhh
Q 010311 19 KTPAQVMALEKFYN-----EHKYPTEEMKSQVAEQIGLTEKQVSGWFC 61 (513)
Q Consensus 19 FT~~QLevLEk~Fe-----kn~YPS~~eReeLA~eLGLSerQVqVWFQ 61 (513)
++.+|...|+..|. .+.+.+..+...+...+|++..++..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67788999999984 45788998888888889999988887774
No 105
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.56 E-value=1.2e+02 Score=25.51 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.+++.|..+|...|.... .-.++|..+|++...|+.|...-+.+.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 578888888888754321 3578999999999999999987777766554
No 106
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=22.81 E-value=1.2e+02 Score=25.95 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=33.0
Q ss_pred CCCccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCChh
Q 010311 14 IKRRYKTPAQVMALEKFYN-----EHKYPTEEMKSQVAEQIGLTEK 54 (513)
Q Consensus 14 RkRT~FT~~QLevLEk~Fe-----kn~YPS~~eReeLA~eLGLSer 54 (513)
.+|..+|.+|+..|..+|. .+.+.+..+...+...+|+...
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3456799999999999994 4688999999998888986543
No 107
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.49 E-value=1.1e+02 Score=24.69 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=30.4
Q ss_pred CccCCHHHHHHHHHHH-hhC-CCCCH-HHHHHHHHHhCCChhhhhhhhh
Q 010311 16 RRYKTPAQVMALEKFY-NEH-KYPTE-EMKSQVAEQIGLTEKQVSGWFC 61 (513)
Q Consensus 16 RT~FT~~QLevLEk~F-ekn-~YPS~-~eReeLA~eLGLSerQVqVWFQ 61 (513)
+..|+.++....-..+ ... .+.+. ....++|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888765444433 321 12232 4567899999999999999963
No 108
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.56 E-value=78 Score=27.33 Aligned_cols=48 Identities=10% Similarity=-0.071 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 19 KTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 19 FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
++..+..+|...|-.. ..-.++|..+|+++..|+.+...-|.+.|+..
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556666665554321 23468999999999999999887777666653
No 109
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=20.84 E-value=1.5e+02 Score=22.07 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=35.1
Q ss_pred CccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--Chhh---hhhhhh
Q 010311 16 RRYKTPAQVMALEKFYN-----EHKYPTEEMKSQVAEQIGL--TEKQ---VSGWFC 61 (513)
Q Consensus 16 RT~FT~~QLevLEk~Fe-----kn~YPS~~eReeLA~eLGL--SerQ---VqVWFQ 61 (513)
...++..|+..|...|. .+.+.+..+...+...+|. +..+ |..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34578889999999984 4678999999998888874 5566 666663
No 110
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.47 E-value=1.3e+02 Score=25.26 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCChhhhhhhhhchhhhHhhhh
Q 010311 18 YKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKRLS 71 (513)
Q Consensus 18 ~FT~~QLevLEk~Fekn~YPS~~eReeLA~eLGLSerQVqVWFQNRRaK~KR~k 71 (513)
.+++.|..+|...|... ..-.++|..+|++...|+.+...-|.+.++..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47788888888775322 13578899999999999999987777766554
Done!