BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010313
(513 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780
OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1
Length = 452
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/424 (55%), Positives = 302/424 (71%)
Query: 80 DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
DL Q VS L+DELL + +K VLD+KG LFR + +G +ELM QL R LAL+
Sbjct: 28 DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
VL WRR Q Y P+T EEY KGIK AGR +++LA LF EAA K ++T YN+L+
Sbjct: 88 VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++ L P
Sbjct: 148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
N TYN+LIAGYMTAW W K+E +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct: 208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
E++K V PL+RAMICAY K +V DR++KIE L+ L+ +EY PWLNVLLIR+YA+
Sbjct: 268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
ED +E ME IN+AFE KT V IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct: 328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
LYH K++MY SQ+R EEME V+ EM KTF IM AY G +V G M
Sbjct: 388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447
Query: 500 CKNG 503
K G
Sbjct: 448 LKRG 451
>sp|Q9ZU88|PP204_ARATH Pentatricopeptide repeat-containing protein At2g48000
OS=Arabidopsis thaliana GN=At2g48000 PE=2 SV=1
Length = 481
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/510 (47%), Positives = 316/510 (61%), Gaps = 50/510 (9%)
Query: 2 KRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPT 61
KR+W++S +Q LL + SS KTL P FTL++SP H D
Sbjct: 3 KRMWRISLISQISDLLCLSRGSSSTLKTLTPF-CFTLSRSPFHQSGGD------------ 49
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
DA S L+++LL +D KV VL+ R G
Sbjct: 50 -----------DDA----------SGLKNQLLRFRNDSGKVASVLE-------RNKIQGA 81
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
AFVEL++QL P L+ V +WRR +A G PMT +EY KGI +GR+ NVDLA LF
Sbjct: 82 AFVELLRQLRPWPVLSQLVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLFH 141
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN----ISPSIVTYNTLISVF 236
E+ANK T YNAL+GAY+ NGLS C+ LF D + + +PS+ TYN LIS++
Sbjct: 142 ESANK---TTSVYNALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLY 198
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GRL++V+ ME+ F +++ N+ P+ TYN LIAGY+ AW W K+E + MK G V P
Sbjct: 199 GRLIMVERMESVFLQLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTL 258
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
TYLL+LRGYA+SGNL RME +Y+ VK HVD E LI +MICAY + DRI+KI+ L
Sbjct: 259 ATYLLMLRGYANSGNLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTL 318
Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
+LIP+K Y+PWL +LL++VYAK+D L ME I+ A + T IMR IV+SYFRC
Sbjct: 319 SKLIPKKSYKPWLYLLLMQVYAKDDNLHAMENFIDQAITKGLQIETDGIMRSIVASYFRC 378
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
NAVDKLA FV+RA SAGW++ RS++H M+MY SQ+R +EME+VL EME++KI SKKT
Sbjct: 379 NAVDKLAKFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEMESFKISRSKKTL 438
Query: 477 WIMYYAY-ATCGQRRKVNQVLGLMCKNGYD 505
I+ Y AT GQ KVNQV G+M K+G+D
Sbjct: 439 CILLRVYAATHGQEHKVNQVAGMMLKHGHD 468
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 198/474 (41%), Gaps = 44/474 (9%)
Query: 63 VRLLSETLTYPDARVRKDLTQTVS-ALRD----ELLANVDDL----------DKVFRVLD 107
VR +S + P+ + D + S +LR+ + L N +D+ DK ++
Sbjct: 27 VRCISISPREPNYAITSDKSNNTSLSLRETRQSKWLINAEDVNERDSKEIKEDKNTKIAS 86
Query: 108 EKGSCLFRRHSNGYAFVELMKQLGSR---PRLALEVLNWRRRQAGYGTPMTKEE------ 158
K + R + +E K+ GS+ PR LE L+ R + + + E
Sbjct: 87 RKAISIILRREATKSIIE--KKKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQL 144
Query: 159 --------YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKC 209
Y K I G+ + A +LF E N+ + Y AL+ AY +G D
Sbjct: 145 WYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAA 204
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+L +K N P + TY+ LI F ++ D ++ +++ + PN TYN LI
Sbjct: 205 FTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLID 264
Query: 270 GYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A M+ ++E + QM+ PD+ T LR + +G + ME YE K G
Sbjct: 265 AYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYE--KFQSSG 322
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEE 385
E P IR + KK+ A+M + + Y W V ++I + + L++
Sbjct: 323 IE-PNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHY-SWTIVTYNVVIDAFGRAGDLKQ 380
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
ME + + V + +V +Y R + DK+ ++ E++ RL ++ +
Sbjct: 381 MEYLFRLMQSERIFPSCVTLC-SLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLV 439
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y + EM+ VL+ ME K T+ M AY G V ++ G++
Sbjct: 440 DAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVV 493
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T +L+ AY +DK + R ++ ++I +V +N L+ +GR+ M+ +
Sbjct: 399 TLCSLVRAYGRASKADKIGGVLRFIEN-SDIRLDLVFFNCLVDAYGRMEKFAEMKGVLEL 457
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
++ P+ TY ++ Y + M V+E++ ++++
Sbjct: 458 MEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVES 495
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 166/387 (42%), Gaps = 16/387 (4%)
Query: 115 RRHSNGY--AFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
R +NG+ E + L ++ + ALEV + R Q Y + Y K + G+
Sbjct: 81 RSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP--KEGTYMKLLVLLGKSG 138
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ A LF E + L+ T+ Y ALL AY + L D S+ +K P + TY
Sbjct: 139 QPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTY 198
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMK 288
+TL+ D +++ ++E+ + ++PN T N +++GY + ++E++ M+
Sbjct: 199 STLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLV 258
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ PD T ++L + + G + ME YE ++ E +I +Y K + D
Sbjct: 259 STACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYD 318
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
++ + MR + E+ PW +I +A + ME + D + +
Sbjct: 319 KMSSVMEYMRKL---EF-PWTTSTYNNIIEAFADVGDAKNMELTF-DQMRSEGMKADTKT 373
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
C+++ Y K+ + V+ A + Y++ + A + EME V M+
Sbjct: 374 FCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMK 433
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ C +TF IM AY G K+
Sbjct: 434 ERQCVCDSRTFEIMVEAYEKEGMNDKI 460
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 131/320 (40%), Gaps = 40/320 (12%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GTY LL +G ++ Q LF ++ +E + P++ Y L++ + R L+D +
Sbjct: 125 GTYMKLLVLLGKSGQPNRAQKLFDEMLEEG-LEPTVELYTALLAAYTRSNLIDDAFSILD 183
Query: 251 EIKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++K P+VFTY+ L+ + A + V+ +Y+ M + P+T T ++L GY
Sbjct: 184 KMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV 243
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G +MEK+ L ++ K V W
Sbjct: 244 GRFDQMEKV--------------LSDMLVSTACKPDV---------------------WT 268
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+++ V+ ++ ME S + F + R ++ SY + DK+++ ++
Sbjct: 269 MNIILSVFGNMGKIDMME-SWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYM 327
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+ S Y++ + +A + ME +M + + KTF + YA G
Sbjct: 328 RKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLF 387
Query: 490 RKVNQVLGLMCKNGYDVPVN 509
KV + L K +++P N
Sbjct: 388 HKVISSVQLAAK--FEIPEN 405
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G + +D+ + + N ++ T+N L+G+Y + DK S+ ++K +
Sbjct: 277 GNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRK-LEFPWT 335
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
TYN +I F + +ME F +++ + + T+ LI GY A ++ KV Q
Sbjct: 336 TSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQ 395
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYS 342
+ + +T Y ++ A + +L ME++Y +K D + F + M+ AY
Sbjct: 396 LAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEI---MVEAYE 452
Query: 343 KCSVTDRIKKIE 354
K + D+I +E
Sbjct: 453 KEGMNDKIYYLE 464
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/449 (21%), Positives = 185/449 (41%), Gaps = 62/449 (13%)
Query: 78 RKDLTQTVSALRDE------LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
R+ L + SA R+ L++ + D + + + LD+ + H F+ L ++LG
Sbjct: 54 RRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCDH----CFL-LFEELG 108
Query: 132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
+ LEV W ++Q Y P Y+K I G+ +A LF+E N +
Sbjct: 109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166
Query: 190 IGT-YNALLGAYMYNGLSDKCQSLFR------DLKKEANISPSIVTYNTLISVFGRLLLV 242
+ YNAL+ A+++ DK ++L + +K P++VTYN L+ F + V
Sbjct: 167 DASVYNALITAHLHT--RDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
D + A F+++ S +SP+V+T+N ++ Y M ++E + M++ PD T+ +L
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ Y +ME+ ++ + + P +MI Y K + D K E + + + +
Sbjct: 285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID---KAEWVFKKMND 341
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
Y P S T C++ Y C +V +
Sbjct: 342 MNYIP-------------------------------SFITY---ECMIMMYGYCGSVSRA 367
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+ + L S ++ + +Y E + + +++ T+ +Y A
Sbjct: 368 REIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427
Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
Y + +V ++ M K+G VP F
Sbjct: 428 YTKADMKEQVQILMKKMEKDGI-VPNKRF 455
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 36/159 (22%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+K T+ T+N+++ Y + DK + +F+ + + N PS +TY +I ++G V
Sbjct: 307 SKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMN-DMNYIPSFITYECMIMMYGYCGSVS 365
Query: 244 HMEAAFQEIKDSN-----------------------------------LSPNVFTYNYLI 268
F+E+ +S+ + P+ TY +L
Sbjct: 366 RAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLY 425
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
Y A M +V+ + + M+ ++P+ +L L +
Sbjct: 426 KAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFG 464
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/384 (20%), Positives = 160/384 (41%), Gaps = 26/384 (6%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+ E M+ G +P + N + G + ++T+ +K IN L+ D
Sbjct: 405 SIFEEMRNAGCKPNIC--TFNAFIKMYG-----NRGKFTEMMKIFDEINVCGLSPD---- 453
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
I T+N LL + NG+ + +F+++K+ A P T+NTLIS + R
Sbjct: 454 --------IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGS 504
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+ ++ + D+ ++P++ TYN ++A MW + E++ M+ G P+ TY
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
LL YA+ + M + E V V L++ ++ SKC D + + E +
Sbjct: 565 LLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC---DLLPEAERAFSELK 621
Query: 362 EKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
E+ + P + L ++ +Y + + + + D + + ++ ++ + R
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKA-NGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
K ++ + G + Y++ + Y R+ + + EM N I T+
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740
Query: 480 YYAYATCGQRRKVNQVLGLMCKNG 503
+YA + V+ M K+G
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHG 764
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 11/297 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ L + +F ++K A S VTYN L+ V+G+ E
Sbjct: 281 TYNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNE 339
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + SP++ TYN LI+ Y M + E+ M PD TY LL G+ +G
Sbjct: 340 MVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ I+E +++ A I Y ++ T+ +K + + + W N
Sbjct: 400 VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTW-N 458
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV---RIMRCIVSSYFRCNAVDKLANFVK 427
LL V+ + M+ ++ F+ V ++S+Y RC + ++ +
Sbjct: 459 TLLA-VFGQNG----MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
R AG S Y++ + A E+ E VL EME+ + ++ T+ + +AYA
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA 570
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 189 TIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
++ TYN+L+ YM++ +D K + + R++ + I P I++YNT+I + R +
Sbjct: 663 SMATYNSLM--YMHSRSADFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDAS 719
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F E+++S + P+V TYN I Y M+ + + + M P+ NTY ++ GY
Sbjct: 720 RIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 18/385 (4%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
+R + AL++ N R+Q Y P K YTK K G D A+ LF ++ LK TI
Sbjct: 72 NRWQSALKIFNLLRKQHWY-EPRCKT-YTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTI 129
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y +L+ Y + L DK S +K ++ P + T+ LIS +L D +++
Sbjct: 130 DVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 189
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + + TYN +I GY A M+ ++E + M++ G +PD T ++ Y +
Sbjct: 190 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 249
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
N+ +ME Y + + +I ++ K + KK+ ++M + EK +
Sbjct: 250 RNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGM---YKKMCSVMDFM-EKRFFSLT 305
Query: 370 NV---LLIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRC-IVSSYFRCNAVDKLA 423
V ++I + K +E+M+ D F V I C +V++Y + V K+
Sbjct: 306 TVTYNIVIETFGKAGRIEKMD----DVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKID 361
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ +++ ++ L ++ + Y + M+ + +ME K K TF M Y
Sbjct: 362 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421
Query: 484 ATCGQRRKVNQVLGLMCKNGYDVPV 508
G V ++ M +G ++ +
Sbjct: 422 TAHGIFDAVQELEKQMISSGENLDI 446
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 6/251 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
KT TY +LL Y L++K + L +K E NI+PS ++YN+L++++ + + + A
Sbjct: 121 KTELTYGSLLNCYCKELLTEKAEGLLNKMK-ELNITPSSMSYNSLMTLYTKTGETEKVPA 179
Query: 248 AFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
QE+K N+ P+ +TYN ++ A T + G I +M + G V PD TY + Y
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
+G + EK + ++ ++F + +I Y + + +I +RL IP+
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+LN +I+V K + L E ++ ++ S +RI+ ++ +Y + + K
Sbjct: 300 VAYLN--MIQVLVKLNDLPGAE-TLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANEL 356
Query: 426 VKRAESAGWRL 436
++A G +L
Sbjct: 357 KEKAPRRGGKL 367
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/403 (21%), Positives = 165/403 (40%), Gaps = 16/403 (3%)
Query: 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR--LALEVLNWRRRQAG 149
LL LDK V DE S R +++ L+ G R +LE+L+ + +
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSV--FSYTALINAYGRNGRYETSLELLDRMKNEKI 207
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
+ +T Y I R +D LFAE ++ ++ I TYN LL A GL
Sbjct: 208 SPSILT---YNTVINACAR-GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D+ + +FR + + I P + TY+ L+ FG+L ++ + E+ P++ +YN
Sbjct: 264 DEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L+ Y + + ++ M+A P+ NTY +LL + SG + +++ +K
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-KEDCLEE 385
+ +I + + K++ L + E+ P + ++A + L E
Sbjct: 383 TDPDAATYNILIEVFGEGGY---FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
+ I V + + ++ ++ + ++ G +HS +
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+A V+E E++L + + I ++ TF AY G+
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 120/286 (41%), Gaps = 11/286 (3%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +IS+ GR L+D F E+ +S +VF+Y LI Y
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ MK + P TY ++ A G + + ++ ++H +G +
Sbjct: 187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH--EGIQ 244
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
P I S C++ + E + R + + P L L+ + K L +EK
Sbjct: 245 -PDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK---LRRLEK 300
Query: 389 SINDAFEHKT--SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
+ E + S+ + ++ +Y + ++ + + ++AG + Y +
Sbjct: 301 VCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
++ R +++ + EM++ D T+ I+ + G ++V
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+NA + AY G ++ + D++K + P T ++SV+ LVD F+E
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEK-SRCDPDERTLEAVLSVYSFARLVDECREQFEE 587
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+K S++ P++ Y ++A Y W V E+ + M
Sbjct: 588 MKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
AN + + Y ++ A+ L ++ F + E +PSI T+++L+ F R LV
Sbjct: 450 ANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMH-EVGSNPSIETFHSLLYSFARGGLV 508
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
EA + DS + N T+N I Y + + + Y M+ PD T +
Sbjct: 509 KESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568
Query: 303 LRGYA 307
L Y+
Sbjct: 569 LSVYS 573
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T A+L Y + L D+C+ F ++K ++I PSI+ Y +++V+G+ D + +E
Sbjct: 564 TLEAVLSVYSFARLVDECREQFEEMKA-SDILPSIMCYCMMLAVYGKTERWDDVNELLEE 622
Query: 252 IKDSNLS 258
+ + +S
Sbjct: 623 MLSNRVS 629
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 150/359 (41%), Gaps = 20/359 (5%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+K GR V A +F +A + K T TYN+++ M G +K ++ ++ E +
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P +TY+ LIS + +L D F E+KD+ + P Y L+ Y K
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
++++ MK P TY L++G +G R+++ Y K + DG L ++
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVDEAYGFYKDMLRDG----LTPDVVFL 341
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPW--------LNVLLIRVYAKEDCLEEMEKSIND 392
+ ++ ++ ++E L + E W N ++ ++ + + E+ S D
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKALFESKAHVSEV-SSWFD 398
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
+ + + ++ Y + N V+K ++ + G+ C + Y S + +
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
R E + KE++ + S + + +M + CG+ + + M G V A+
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 19/289 (6%)
Query: 48 RDLCAPATHTVFPTLVRLLS------ETLTYPDARVRKDLTQTVSALRD--ELLANVDDL 99
R C+P +T + L++ L E + +R LT V L + +L V +
Sbjct: 296 RAGCSPTVYT-YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY 159
+++ V E G ++R ++ ++K L EV +W + ++ E+
Sbjct: 355 EELTNVFSEMG--MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA--DSVSPSEF 410
Query: 160 TKGIKFAG--RINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G + N V+ A L E K Y +L+ A + LF++L
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470
Query: 217 KKE-ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
K+ N+S + Y +I FG+ + F E+K+ P+V+ YN L++G + A
Sbjct: 471 KENFGNVSSRV--YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
M + + + M+ D N++ ++L G+A +G R +++E +KH
Sbjct: 529 MINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKH 577
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 3/183 (1%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A+ L+ LG R ++ + +G ++ Y IK G+ + A DLF E
Sbjct: 446 AYCSLINALGKAKRYEAANELFKELKENFGN-VSSRVYAVMIKHFGKCGKLSEAVDLFNE 504
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N+ + YNAL+ + G+ ++ SL R ++ E I ++N +++ F R
Sbjct: 505 MKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME-ENGCRADINSHNIILNGFARTG 563
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ F+ IK S + P+ TYN L+ + A M+ + + + MK D TY
Sbjct: 564 VPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYS 623
Query: 301 LLL 303
+L
Sbjct: 624 SIL 626
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT--YNALLGAYMYNGLSDK 208
G P Y I G+ + A +LF E ++ + + Y ++ + G +
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAANELFKEL-KENFGNVSSRVYAVMIKHFGKCGKLSE 497
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF ++K + + P + YN L+S + +++ + ++++++ ++ ++N ++
Sbjct: 498 AVDLFNEMKNQGS-GPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
G+ + + E+++ +K + PD TY LL +AH+G
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAG 598
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 19/258 (7%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFA-------GRINNVD 173
Y + EL+K LG R+ G+ M ++ T + F G++ V+
Sbjct: 304 YTYTELIKGLGKAGRV--------DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355
Query: 174 LAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
++F+E + T+ +YN ++ A + S + D K ++SPS TY+ L
Sbjct: 356 ELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSIL 415
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + V+ +E+ + P Y LI A + E+++ +K
Sbjct: 416 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG 475
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
+ Y ++++ + G L ++ +K+ G + A++ K + I +
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGM---INE 532
Query: 353 IEALMRLIPEKEYRPWLN 370
+L+R + E R +N
Sbjct: 533 ANSLLRKMEENGCRADIN 550
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 117/293 (39%), Gaps = 20/293 (6%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++SP++++ L+ GR +V + F + K P TYN +I M KV
Sbjct: 159 SVSPAVLS--ELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKV 216
Query: 281 EEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E+Y +M G PDT TY L+ Y G ++++ +K + + ++
Sbjct: 217 HEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRP-----WLNVLLIRVYAKEDCLEEMEKSINDAF 394
Y K + K+E + L E + + LI+ K ++E D
Sbjct: 277 IYFK------VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV---MYASQ 451
+ V + +++ + V++L N +E WR ++ V ++ S+
Sbjct: 331 RDGLTPDVV-FLNNLMNILGKVGRVEELTNVF--SEMGMWRCTPTVVSYNTVIKALFESK 387
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
V E+ S +M+ + S+ T+ I+ Y + K +L M + G+
Sbjct: 388 AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF 440
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 144/338 (42%), Gaps = 8/338 (2%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R N + A D+F K T TYN ++ Y S L+ +++ P+I
Sbjct: 241 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSH-QCKPNI 299
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY L++ F R L + E F+++++ L P+V+ YN L+ Y A EI+ +
Sbjct: 300 CTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 359
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M+ PD +Y +++ Y +G E ++E +K ++ AYSK
Sbjct: 360 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKAR- 418
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
+ K EA+++ + E P VL ++ +Y + +MEK + + E+ +
Sbjct: 419 --DVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE-MENGPCTADIS 475
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+++ Y + ++++ + +R + S++ Y+ ++ + V +EM
Sbjct: 476 TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEM 535
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ T ++ A ++ Q +V VL M K
Sbjct: 536 IDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKG 573
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 49/329 (14%)
Query: 122 AFVE-LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
A++E LMK+ G+ A++V +R T E Y I G+ + ++ L+
Sbjct: 233 AYIEGLMKRKGNTEE-AIDVFQRMKRDR---CKPTTETYNLMINLYGKASKSYMSWKLYC 288
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA------------------- 220
E + K I TY AL+ A+ GL +K + +F L+++
Sbjct: 289 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Query: 221 ---------------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
P +YN ++ +GR L EA F+E+K ++P + ++
Sbjct: 349 YPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHM 408
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L++ Y A K E I + M V PDT +L Y G +MEKI +++
Sbjct: 409 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENG 468
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV--YAKE--- 380
+ +I Y K +R IE L + EK +RP + R+ Y+++
Sbjct: 469 PCTADISTYNILINIYGKAGFLER---IEELFVELKEKNFRPDVVTWTSRIGAYSRKKLY 525
Query: 381 -DCLEEMEKSINDAFEHKTSVTTVRIMRC 408
CLE E+ I+ V + C
Sbjct: 526 VKCLEVFEEMIDSGCAPDGGTAKVLLSAC 554
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 74/336 (22%)
Query: 12 QTELLLQRLQRHSSKPKTLPPLSVFT-----LTKSPNHS---------FTRDLCAPATHT 57
+ E++L +Q H PKT+ ++V+ L K ++ RD C P T T
Sbjct: 208 RAEVVLVEMQNHHVSPKTI-GVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTET 266
Query: 58 VFPTLVRLLSETLT-------YPDARVRK------DLTQTVSALRDELLANVDDLDKVFR 104
+ ++ L + Y + R + T V+A E L + +++F
Sbjct: 267 -YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLC--EKAEEIFE 323
Query: 105 VLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIK 164
L E G + Y + LM+ ++ R YG
Sbjct: 324 QLQEDG-----LEPDVYVYNALME-------------SYSRAGYPYG------------- 352
Query: 165 FAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
AA++F+ + + +YN ++ AY GL +++F ++K+ I+
Sbjct: 353 ----------AAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR-LGIA 401
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++ ++ L+S + + V EA +E+ ++ + P+ F N ++ Y + K+E+I
Sbjct: 402 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 461
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
M+ GP D +TY +L+ Y +G L R+E+++
Sbjct: 462 LAEMENGPCTADISTYNILINIYGKAGFLERIEELF 497
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 17/190 (8%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVL----NWRRRQAGYGTPMTKEEYTKGIK-------- 164
HS+ A E MK+LG P + +L + R + KE G++
Sbjct: 385 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNS 444
Query: 165 ---FAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
GR+ + AE N I TYN L+ Y G ++ + LF +LK E
Sbjct: 445 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK-EK 503
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N P +VT+ + I + R L F+E+ DS +P+ T L++ + +V
Sbjct: 504 NFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQV 563
Query: 281 EEIYQMMKAG 290
+ + M G
Sbjct: 564 TSVLRTMHKG 573
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 123/319 (38%), Gaps = 46/319 (14%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+ AY + +SL+ L E+ P+ TY LI + L++ E E+
Sbjct: 158 FNLLIDAYGQKFQYKEAESLYVQLL-ESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEM 216
Query: 253 KDSNLSP---NVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGY 306
++ ++SP V YN I G M G EE ++Q MK P T TY L++ Y
Sbjct: 217 QNHHVSPKTIGVTVYNAYIEGLMKRK--GNTEEAIDVFQRMKRDRCKPTTETYNLMINLY 274
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ K ++ K + +R+ C + C+ T
Sbjct: 275 GKAS------------KSYMSWKLYCEMRSHQCKPNICTYT------------------- 303
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L+ +A+E E+ E+ I + + V + ++ SY R A
Sbjct: 304 -----ALVNAFAREGLCEKAEE-IFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 357
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G R+ Y+ + Y + E+V +EM+ I + K+ ++ AY+
Sbjct: 358 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKA 417
Query: 487 GQRRKVNQVLGLMCKNGYD 505
K ++ M +NG +
Sbjct: 418 RDVTKCEAIVKEMSENGVE 436
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 124/276 (44%), Gaps = 7/276 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T N ++ Y + + LF L+K +I P++V+YNT++ V+G L F
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRK-MDIEPNVVSYNTILRVYGEAELFGEAIHLF 388
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ ++ NV TYN +I Y K + Q M++ + P+ TY ++ + +
Sbjct: 389 RLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKA 448
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G L R +++ ++ + L + MI AY + + K++ ++L P+ R
Sbjct: 449 GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKL-PDNIPRE-- 505
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
I + AK EE AFE V + + C+++ Y R + ++
Sbjct: 506 --TAITILAKAGRTEEATWVFRQAFE-SGEVKDISVFGCMINLYSRNQRYVNVIEVFEKM 562
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+AG+ ++ + Y QR E+ ++V +EM+
Sbjct: 563 RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 598
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 165/401 (41%), Gaps = 55/401 (13%)
Query: 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP---RLALEVLNWRRR 146
DELLA++ +++ L + + + M L SR + +L +L+W
Sbjct: 93 DELLASIHQTQN-----EKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHE 147
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGL 205
+A Y TP + Y ++ R D+A LF E + L TY+ L+ ++ G+
Sbjct: 148 EAKY-TP-SVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGM 205
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
D S + ++++ +S +V Y+ LI + RL + F +K S ++P++ YN
Sbjct: 206 FDSALSWLQKMEQD-RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYN 264
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+I Y A ++ + + + M V+P+T +Y LL Y + ++ +K
Sbjct: 265 SMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 324
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKED 381
+ MI Y + D +K+ + L + + + P NV+ ++RVY + +
Sbjct: 325 NCALDLTTCNIMIDVYGQL---DMVKEADRLFWSLRKMDIEP--NVVSYNTILRVYGEAE 379
Query: 382 CLEE----------------------MEKSINDAFEHKTSVTTVRIMRC----------- 408
E M K EH+ + V+ M+
Sbjct: 380 LFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYS 439
Query: 409 -IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
I+S + + +D+ A ++ S+G + + LY + +V Y
Sbjct: 440 TIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY 480
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G ++ Y I + ++ A AE NK L+ T+ TY +L+G Y G +K
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKA 491
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
L+ ++ + I+PSI T+ TL+S R L+ F E+ + N+ PN TYN +I
Sbjct: 492 LRLYHEMTGKG-IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
GY K E + M ++PDT +Y L+ G +G
Sbjct: 551 GYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ 592
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R +D A E + LK ++ YN+L+ + G + ++
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMI 464
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P++VTY +L+ + ++ + E+ ++P+++T+ L++G A +
Sbjct: 465 NK-KLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLI 523
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+++ M V P+ TY +++ GY G+ M K +E +K + P
Sbjct: 524 RDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGD---MSKAFEFLKEMTEKGIVP 575
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 24/286 (8%)
Query: 200 YMYNGLSDK-CQS-------LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++YN L D C+ L D + + P+ VTY+ LI +F R +D + E
Sbjct: 368 FVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGE 427
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D+ L +V+ YN LI G+ E M + P TY L+ GY G
Sbjct: 428 MVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGK 487
Query: 312 LPRMEKIYELVKHHVDGKEF-PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ + ++Y H + GK P I S I+ L + E +P N
Sbjct: 488 INKALRLY----HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP--N 541
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM------RCIVSSYFRCNAVDKLAN 424
+ V + C E ++ AFE +T I+ R ++ +
Sbjct: 542 RVTYNVMIEGYC---EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
FV L Y + + + ++EE SV +EM +D
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVD 644
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L TYN L+ + G ++ L + + +SP +TY T+I+ R V
Sbjct: 784 LANTATYNMLIRGFCRQGRIEEASELITRMIGDG-VSPDCITYTTMINELCRRNDVKKAI 842
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+ + + + P+ YN LI G A GK E+ M ++P+ T
Sbjct: 843 ELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
DL P+ VTY +I+ + V+ E +++ + PN TY ++
Sbjct: 706 DLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGC----FLDI 761
Query: 275 WMWGKVE-----EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DG 328
G+V+ E++ + G ++ +T TY +L+RG+ G R+E+ EL+ + DG
Sbjct: 762 LTKGEVDMQKAVELHNAILKG-LLANTATYNMLIRGFCRQG---RIEEASELITRMIGDG 817
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
I C D K IE L + EK RP
Sbjct: 818 VSPDCITYTTMINELCRRNDVKKAIE-LWNSMTEKGIRP 855
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
SPS ++L+ + ++ + + D +SPN+F YN LI + + E
Sbjct: 329 SPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAEL 388
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++ M + P+ TY +L+ + G L
Sbjct: 389 LFDRMGKIGLRPNDVTYSILIDMFCRRGKL 418
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/379 (21%), Positives = 150/379 (39%), Gaps = 37/379 (9%)
Query: 125 ELMKQLGSRPRLA-----LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
E MK++G P L L+V R + E +KG+KF D F
Sbjct: 234 ERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKF-----------DEF 282
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
T + +L A GL + + F +LK P VTYN L+ VFG+
Sbjct: 283 ------------TCSTVLSACAREGLLREAKEFFAELKS-CGYEPGTVTYNALLQVFGKA 329
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ + +E+++++ + TYN L+A Y+ A + + +MM VMP+ TY
Sbjct: 330 GVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITY 389
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
++ Y +G K++ +K A++ K S ++ + K+ M+
Sbjct: 390 TTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKS 449
Query: 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRCIVSSYFRC 416
R N +L K M+K +N F S ++S+Y RC
Sbjct: 450 NGCSPNRATWNTMLALCGNK-----GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
+ + AG+ C + Y++ + A + E+V+ +M++ ++ ++
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSY 564
Query: 477 WIMYYAYATCGQRRKVNQV 495
+M YA G + ++
Sbjct: 565 SLMLQCYAKGGNYLGIERI 583
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y+ G K + + + L+K + + P +V+YNT+I F R L+ E
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEK-SQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSE 726
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + + P +FTYN ++GY M+ ++E++ + M P+ T+ +++ GY +G
Sbjct: 727 MTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 128/317 (40%), Gaps = 13/317 (4%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+N +L G+ +FR++K P T+NTLIS +GR +
Sbjct: 457 ATWNTMLALCGNKGMDKFVNRVFREMKS-CGFEPDRDTFNTLISAYGRCGSEVDASKMYG 515
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + + V TYN L+ W E + MK+ P +Y L+L+ YA G
Sbjct: 516 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575
Query: 311 NLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
N +E+I +K +G+ FP L+R ++ A KC + E L + Y+P
Sbjct: 576 NYLGIERIENRIK---EGQIFPSWMLLRTLLLANFKCRA---LAGSERAFTLFKKHGYKP 629
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ + ++ ++ + + ++ E + E S V ++ Y R K
Sbjct: 630 DMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLV-TYNSLMDMYVRRGECWKAEEI 688
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+K E + + Y++ + + + ++E +L EM I T+ Y
Sbjct: 689 LKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTA 748
Query: 486 CGQRRKVNQVLGLMCKN 502
G ++ V+ M KN
Sbjct: 749 MGMFAEIEDVIECMAKN 765
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/355 (18%), Positives = 155/355 (43%), Gaps = 13/355 (3%)
Query: 163 IKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
++ GR + +AA L + ++L + Y +L AY G +K LF +K E
Sbjct: 182 VRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMK-EMG 240
Query: 222 ISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
SP++VTYN ++ VFG++ + E++ L + FT + +++ + +
Sbjct: 241 PSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREA 300
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
+E + +K+ P T TY LL+ + +G + + ++ + + ++ A
Sbjct: 301 KEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAA 360
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEH 396
Y + + K+ ++ ++ +K P N + +I Y K +E K + + +
Sbjct: 361 YVRAGFS---KEAAGVIEMMTKKGVMP--NAITYTTVIDAYGKAGKEDEALK-LFYSMKE 414
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V ++S + + +++ + +S G R+ +++ + + ++ +
Sbjct: 415 AGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKF 474
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ V +EM++ + + TF + AY CG +++ G M + G++ V +
Sbjct: 475 VNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 529
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
L K+ P +V +N+++S+F R + D E + I++ LSP++ TYN L+ Y+
Sbjct: 621 LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRG 680
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
K EEI + ++ + PD +Y +++G+ G M++ ++ + P I
Sbjct: 681 ECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRG---LMQEAVRMLSEMTERGIRPCIF 737
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
S + +IE ++ + + + RP
Sbjct: 738 TYNTFVSGYTAMGMFAEIEDVIECMAKNDCRP 769
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ + GL + + ++ E I P I TYNT +S + + + +E +
Sbjct: 703 SYNTVIKGFCRRGLMQEAVRMLSEMT-ERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIEC 761
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLR 304
+ ++ PN T+ ++ GY A + + + +K P D + L LR
Sbjct: 762 MAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQRLALR 815
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ AY L +K SLF+ +K + P TYN+L + + LVD + E+
Sbjct: 518 YNVMIKAYGKAKLHEKALSLFKGMKNQGTW-PDECTYNSLFQMLAGVDLVDEAQRILAEM 576
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
DS P TY +IA Y+ + ++Y+ M+ V P+ Y L+ G+A SG +
Sbjct: 577 LDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMV 636
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
+ + +++ H ++ ++I AYSK + +++
Sbjct: 637 EEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRV 677
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQS 211
EY IK G+ + A LF K +K GT YN+L L D+ Q
Sbjct: 517 EYNVMIKAYGKAKLHEKALSLF-----KGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQR 571
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+ ++ ++ P TY +I+ + RL L+ ++ ++ + + PN Y LI G+
Sbjct: 572 ILAEML-DSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGF 630
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ M + + ++MM+ V + L++ Y+ G L ++Y+ +K G +
Sbjct: 631 AESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDV 690
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+M+ S C+ + + E++ + EK
Sbjct: 691 AASNSML---SLCADLGIVSEAESIFNALREK 719
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 119/299 (39%), Gaps = 9/299 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ Y G + +LF ++ K + + VT+NT+I G + E+ ++
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLK-SGVPIDTVTFNTMIHTCGTHGHLSEAESLLKK 365
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ +SP+ TYN L++ + A E Y+ ++ + PDT T+ +L
Sbjct: 366 MEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKM 425
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +E + + + +D P+I M Y + + K + R +
Sbjct: 426 VAEVEAVIAEMDRNSIRIDEHSVPVIMQM---YVNEGLVVQAKAL--FERFQLDCVLSST 480
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+I VYA++ E E V ++ +Y + +K + K
Sbjct: 481 TLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKG 540
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
++ G Y+S M A V+E + +L EM + KT+ M +Y G
Sbjct: 541 MKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLG 599
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/387 (18%), Positives = 154/387 (39%), Gaps = 54/387 (13%)
Query: 166 AGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
AGR+N+ AA+LF+E + + T+ T+N ++ +G + +SL + ++ E IS
Sbjct: 318 AGRLND---AANLFSEMLKSGVPIDTV-TFNTMIHTCGTHGHLSEAESLLKKME-EKGIS 372
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P TYN L+S+ ++ +++I+ L P+ T+ ++ M +VE +
Sbjct: 373 PDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAV 432
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV--------------------- 322
M + D ++ ++++ Y + G + + + ++E
Sbjct: 433 IAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEK 492
Query: 323 ------------KHHVDGKEFPLIR--AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
K ++ G+ ++ MI AY K + ++ AL K W
Sbjct: 493 GLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEK-----ALSLFKGMKNQGTW 547
Query: 369 LNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+ L ++ A D ++E ++ + + + + +++SY R + +
Sbjct: 548 PDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCK-PGCKTYAAMIASYVRLGLLSDAVD 606
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ E G + +Y S + +A VEE + ME + + + + AY+
Sbjct: 607 LYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYS 666
Query: 485 TCGQRRKVNQVLGLM--CKNGYDVPVN 509
G + +V M + G DV +
Sbjct: 667 KVGCLEEARRVYDKMKDSEGGPDVAAS 693
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 112/279 (40%), Gaps = 23/279 (8%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+FR + + P+++ YN ++ GR D + + E+ + + P TY L+ Y
Sbjct: 131 VFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVY 190
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
A + + + M PD T ++R + +SG R ++ + K GK
Sbjct: 191 GKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFF---KGWCAGK-- 245
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391
S+ D K A + + +L++ L +V A+ +EKS++
Sbjct: 246 -------VDLDLDSIDDFPKNGSAQSPV----NLKQFLSMELFKVGAR----NPIEKSLH 290
Query: 392 DAFEHKTSVTTVRI---MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
A +S R+ ++ Y + ++ AN +G + +++ +
Sbjct: 291 FASGSDSSPRKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTC 350
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ + E ES+LK+ME I KT+ I+ +A G
Sbjct: 351 GTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAG 389
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T + +G Y Y + CQ L I YN +I + +D A+
Sbjct: 835 ATLFSAMGLYAYA--LESCQEL-----TSGEIPREHFAYNAVIYTYSASGDIDMALKAYM 887
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+++ L P++ T YL+ Y A M V+ ++ + G + P + +
Sbjct: 888 RMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQSLF 936
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 167/397 (42%), Gaps = 29/397 (7%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
L + N +FV ++ +P +A W R+Q Y + E Y + +V
Sbjct: 111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNL--ECYVSLVDVLALAKDV 168
Query: 173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D + +E T+ NAL+ ++ G+ ++ ++R + KE I P++ TYN
Sbjct: 169 DRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKM-KENGIEPTLYTYNF 227
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ + VD E F+ ++ + P++ TYN +I GY A K E + M+
Sbjct: 228 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 287
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH---HVDGKEFPLIRAMICAYSKCSVTD 348
D TY+ +++ + +Y+ + V F L+ +C K + +
Sbjct: 288 HEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGK--LNE 345
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK----EDCLEEMEKSINDAFEHKTSVTT 402
E ++R K +P + + +LI YAK ED + + + I++ F K V T
Sbjct: 346 GYTVFENMIR----KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGF--KPDVVT 399
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+ +V+ + V++ ++ G + Y S + RV+E E + +
Sbjct: 400 YSV---VVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 456
Query: 463 EMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGL 498
EM C++ ++ Y A + RKV++ + L
Sbjct: 457 EMSEK--GCTRDSY--CYNALIDAFTKHRKVDEAIAL 489
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 23/198 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + GY E M + GS+P +A+ YT I +
Sbjct: 336 GLCKEGKLNEGYTVFENMIRKGSKPNVAI--------------------YTVLIDGYAKS 375
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+V+ A L ++ K + TY+ ++ NG ++ F + + ++ + +
Sbjct: 376 GSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG-LAINSMF 434
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y++LI G+ VD E F+E+ + + + + YN LI + + +++ M+
Sbjct: 435 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRME 494
Query: 289 AGPVMPDT-NTYLLLLRG 305
T TY +LL G
Sbjct: 495 EEEGCDQTVYTYTILLSG 512
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 118/245 (48%), Gaps = 6/245 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T+ ++NALL AY+ + D+ F++L ++ I+P +VTYNT+I R +D + +
Sbjct: 155 RTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILS 214
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F+E++ + P++ ++N L+ + ++ + + I+ +MK+ + P+ +Y +RG
Sbjct: 215 IFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLT 274
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ + +++K + A+I AY V + ++++ + EK P
Sbjct: 275 RNKKFTDALNLIDVMKTEGISPDVHTYNALITAY---RVDNNLEEVMKCYNEMKEKGLTP 331
Query: 368 --WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+LI + K+ L+ + +A +HK ++ + + +V +D+
Sbjct: 332 DTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKL-LSRPNMYKPVVERLMGAGKIDEATQL 390
Query: 426 VKRAE 430
VK +
Sbjct: 391 VKNGK 395
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 141/354 (39%), Gaps = 27/354 (7%)
Query: 116 RHSNGYAFVELMKQLGSRPRL-ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
+ S V+ M+Q G P L + L R ++G TP +L
Sbjct: 240 KFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTP-------------------NL 280
Query: 175 AADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L N L+ TYN LL A + D +F D++ P + TYN +I
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH-RCQPDLWTYNAMI 339
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
SV+GR L E F E++ P+ TYN L+ + KV+E+YQ M+
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
D TY ++ Y G L ++Y+ +K + G+ I + S +R +
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMK-GLSGRNPDAITYTVLIDS-LGKANRTVEA 457
Query: 354 EALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
ALM + + +P L LI YAK EE E + + T + ++
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL-AYSVMLD 516
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
R N K + S G +LY ++ + R ++++ +++ME
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 166/433 (38%), Gaps = 58/433 (13%)
Query: 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP-RLA 137
KD + V L D++L+ + V +LD + L + Y FV +K +G + A
Sbjct: 121 KDWRERVKFLTDKILS-LKSNQFVADILDAR---LVQMTPTDYCFV--VKSVGQESWQRA 174
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197
LEV W + + G+ GR N LA ++F A + YNA++
Sbjct: 175 LEVFEWLNLRHWHSPNARMVAAILGV--LGRWNQESLAVEIFTRAEPTVGDRVQVYNAMM 232
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
G Y +G K Q L D ++ P ++++NTLI+ +K L
Sbjct: 233 GVYSRSGKFSKAQELV-DAMRQRGCVPDLISFNTLINA---------------RLKSGGL 276
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+PN+ E+ M++ + PD TY LL + NL K
Sbjct: 277 TPNLAV------------------ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVK 318
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL------NV 371
++E ++ H + AMI Y +C + + RL E E + + N
Sbjct: 319 VFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAE------RLFMELELKGFFPDAVTYNS 372
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL +A+E E++ K + + I+ Y + +D K +
Sbjct: 373 LLY-AFARERNTEKV-KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKG 430
Query: 432 AGWRLCRSLYHSKMV-MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
R ++ ++ ++ R E +++ EM + I + +T+ + YA G+R
Sbjct: 431 LSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKRE 490
Query: 491 KVNQVLGLMCKNG 503
+ M ++G
Sbjct: 491 EAEDTFSCMLRSG 503
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 153/359 (42%), Gaps = 52/359 (14%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
AE H Y ++ AY L K +S+ +L++ +P + T+N+L+S + +
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGR-TPDLKTWNSLMSAYAQC 800
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DT 296
+ A F + SP V + N L+ G++EE+Y +++ M
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINILLHALCVD---GRLEELYVVVEELQDMGFKISK 857
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
++ LL+L +A +GN+ ++KIY +K L R MI K R++ E +
Sbjct: 858 SSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCK---GKRVRDAEIM 914
Query: 357 MRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIN-------DAFE-HKTSVTTVRIM 406
+ + E ++ L + ++++Y +E+ +K++ E +T+ T+ IM
Sbjct: 915 VSEMEEANFKVELAIWNSMLKMYT---AIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971
Query: 407 RC-----------------------------IVSSYFRCNAVDKLANFVKRAESAGWRLC 437
C ++S++ + +++ + S G +L
Sbjct: 972 YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
RS YH+ M + + E +L+ M+N I+ + T ++ +Y++ G ++ +VL
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVL 1090
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 13/250 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D L++D+K + +P +TY LI G+ A E
Sbjct: 404 TYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSE 463
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D + P + TY+ LI GY A + E+ + M PD Y ++L
Sbjct: 464 MLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNE 523
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +Y + + L MI K + +D I+K I + E +N
Sbjct: 524 TRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKT------IRDMEELCGMNP 577
Query: 372 LLI-RVYAKEDCLE----EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L I V K +C + +++ +I + +E + T + I+ SS A + L F+
Sbjct: 578 LEISSVLVKGECFDLAARQLKVAITNGYELEND-TLLSILGSYSSSGRHSEAFE-LLEFL 635
Query: 427 KRAESAGWRL 436
K S RL
Sbjct: 636 KEHASGSKRL 645
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 20/228 (8%)
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
E+Y K ++ RI L D TYN L+ Y + ++ L + +
Sbjct: 941 EDYKKTVQVYQRIKETGLEPDE------------TTYNTLIIMYCRDRRPEEGYLLMQQM 988
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P + TY +LIS FG+ ++ E F+E+ L + Y+ ++ +
Sbjct: 989 RN-LGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGS 1047
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIR 335
K E++ QMMK + P T LL+ Y+ SGN EK+ +K V+ P
Sbjct: 1048 DSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLP-YS 1106
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEK---EYRPWLNVLLIRVYAKE 380
++I AY + D IE L+ + E ++R W + ++KE
Sbjct: 1107 SVIDAYLRSK--DYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/384 (18%), Positives = 140/384 (36%), Gaps = 46/384 (11%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I G+ N AA L +E + +K T+ TY+AL+ Y G ++ + F +
Sbjct: 441 YTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCML 500
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P + Y+ ++ V R ++++ +P+ Y +I G M
Sbjct: 501 R-SGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRS 559
Query: 278 GKVE---------------EIYQMMKAGPVMP----------------DTNTYLLLLRGY 306
++ EI ++ G + +T L +L Y
Sbjct: 560 DDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSY 619
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ SG ++ E +K H G + + A+I + C V + AL +
Sbjct: 620 SSSGRHSEAFELLEFLKEHASGSKRLITEALIVLH--CKVNNLSA---ALDEYFADPCVH 674
Query: 367 PW------LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
W + L+ + E + +D + + + +V Y + +
Sbjct: 675 GWCFGSSTMYETLLHCCVANEHYAEASQVFSD-LRLSGCEASESVCKSMVVVYCKLGFPE 733
Query: 421 KLANFVKRAESAGWRL-CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
V +AE+ G+ C +Y + Y Q+ ++ ESV+ + KT+ +
Sbjct: 734 TAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSL 793
Query: 480 YYAYATCGQRRKVNQVLGLMCKNG 503
AYA CG + + M ++G
Sbjct: 794 MSAYAQCGCYERARAIFNTMMRDG 817
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C RR GY ++ M+ LG P+L + Y I G+
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKL--------------------DTYKSLISAFGKQKC 1012
Query: 172 VDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
++ A LF E +K LK + Y+ ++ +G K + L + + K A I P++ T +
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQ-MMKNAGIEPTLATMH 1071
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKA 289
L+ + E +KD+ + Y+ +I Y+ + + +E + +M K
Sbjct: 1072 LLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKE 1131
Query: 290 GPVMPDTNTYLLLLRGYAHS 309
G + PD + +R + S
Sbjct: 1132 G-LEPDHRIWTCFVRAASFS 1150
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/333 (19%), Positives = 133/333 (39%), Gaps = 50/333 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI---SVFGRLLLVDHMEAA 248
T+N+L+ AY G ++ +++F + ++ SP++ + N L+ V GRL + +
Sbjct: 789 TWNSLMSAYAQCGCYERARAIFNTMMRDGP-SPTVESINILLHALCVDGRL---EELYVV 844
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+E++D + + ++ + A +V++IY MKA +P Y +++
Sbjct: 845 VEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCK 904
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI-------- 360
+ E + ++ E + +M+ Y+ ++ D K ++ R+
Sbjct: 905 GKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYT--AIEDYKKTVQVYQRIKETGLEPDE 962
Query: 361 ---------------PEKEY-----------RPWLNVL--LIRVYAKEDCLEEMEKSIND 392
PE+ Y P L+ LI + K+ CLE+ E+ +
Sbjct: 963 TTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEE 1022
Query: 393 AFEH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
K + M I + +KL +K +AG + H MV Y+S
Sbjct: 1023 LLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK---NAGIEPTLATMHLLMVSYSS 1079
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+E E VL +++ +++ + + + AY
Sbjct: 1080 SGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAY 1112
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ N D + +FR+++ + I+P + +Y LI+ F +L + + F E
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L+PNV YN L+ G+ + K +E+ M + P+ TY ++ GY SG+
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 312 LPRMEKIYELVK 323
L ++++ +K
Sbjct: 713 LAEAFRLFDEMK 724
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ VD A ++F E K + + +Y L+ + G K S+F ++ +E ++P+++
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVII 664
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN L+ F R ++ + E+ L PN TY +I GY + + ++ MK
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++PD+ Y L+ G ++ R I+
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTY 193
R E+L +++ +P T KG+ +G ++ ++ ++ A + + Y
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN---VVIY 455
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
L+ ++ N + +++K E I+P I YN+LI + +D + E+
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMK-EQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++ L PN FTY I+GY+ A + ++ + M+ V+P+ L+ Y G +
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 11/215 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-AYMYNGLSDKCQSLFR--D 215
YT + R+N+V+ A +F + +NAL+ + + K + L R D
Sbjct: 735 YTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD 794
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ P+ VTYN +I + ++ + F +++++NL P V TY L+ GY
Sbjct: 795 GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--LVKHHVDGK---E 330
++ ++ A + PD Y +++ + G + + + K+ VD
Sbjct: 855 RRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLS 914
Query: 331 FPLIRAMICAYSKCSVTDRIKKI-EALMRL--IPE 362
RA++ ++K + +K+ E ++RL IP+
Sbjct: 915 ISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 17/228 (7%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPM-----TKEE--- 158
KG C Y V+ M G RP + + ++ + + +G M KE+
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 159 -----YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
Y I + +D A E LK TY A + Y+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++++ E + P+ V LI+ + + V +A++ + D + + TY L+ G
Sbjct: 545 VKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF 603
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
EEI++ M+ + PD +Y +L+ G++ GN+ + I++
Sbjct: 604 KNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L P +TY+ LI G + + M + V D +TY LL+ G N
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 316 EK-IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLNV 371
+ ++E+V H ++ K + + IC SK V ++ K + M LIP+ + L
Sbjct: 332 KGLVHEMVSHGINIKPY-MYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL-- 388
Query: 372 LLIRVYAKE-------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA--VDKL 422
I Y +E + L EM+K N T T V+ M C++ +D
Sbjct: 389 --IEGYCREKNVRQGYELLVEMKKR-NIVISPYTYGTVVKGM---------CSSGDLDGA 436
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
N VK ++G R +Y + + + R + VLKEM+ I
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI 483
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ VD A ++F E K I +YN+L+ NG D+ F++++ E ++P
Sbjct: 488 GRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPD 546
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTY+TL+ FG+ V+ + F+E+ PN+ TYN L+ + ++Y
Sbjct: 547 VVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYS 606
Query: 286 MMKAGPVMPDTNTYLLLLR 304
MK + PD+ TY +L R
Sbjct: 607 KMKQQGLTPDSITYTVLER 625
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSL 212
MT+ Y+ ++ ++ +V A LF + + +K +Y ++L + G + + +
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEM 429
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+ ++ ++ +++ YNT+ S G+L + H+ F+++K SP++FTYN LIA +
Sbjct: 430 LSKIHEKGVVTDTMM-YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFG 488
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ I++ ++ PD +Y L+ +G++
Sbjct: 489 RVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 127/323 (39%), Gaps = 17/323 (5%)
Query: 175 AADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D++ E H I YN LL A + +K +F D+KK + TY +I
Sbjct: 222 AFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKR-HCRRDEYTYTIMI 277
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
GR+ D F E+ L+ NV YN L+ M K +++ M
Sbjct: 278 RTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCR 337
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ TY LLL G L R++ + E+ K ++ G L+R + SK +
Sbjct: 338 PNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTL----SKLGHVSEAHR 393
Query: 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
+ M P K R +L + +E +E + K VT + + S+
Sbjct: 394 LFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIE--MLSKIHEKGVVTDTMMYNTVFSA 451
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
+ + + + ++ + G Y+ + + V+E ++ +E+E + DC
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE--RSDC- 508
Query: 473 KKTFWIMYYAYATC-GQRRKVNQ 494
K I Y + C G+ V++
Sbjct: 509 -KPDIISYNSLINCLGKNGDVDE 530
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 33/320 (10%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I+ GRI D A LF E + L + YN L+ + DK +F +
Sbjct: 273 YTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM- 331
Query: 218 KEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
E P+ TY+ L+++ G+L+ +D EI ++ + Y+YL+ T
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLD----GVVEISKRYMTQGI--YSYLVR---TL 382
Query: 275 WMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
G V E +++ M + PV + ++Y+ +L +G +E I L K H G
Sbjct: 383 SKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGK--TIEAIEMLSKIHEKG--- 437
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPE-KEYRPWLNV----LLIRVYAKEDCLEEM 386
++ + + S ++K+I + L + K+ P ++ +LI + + + E+
Sbjct: 438 -VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGR---VGEV 493
Query: 387 EKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
+++IN + E + +++ + VD+ K + G Y +
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553
Query: 445 MVMYASQRRVEEMESVLKEM 464
M + RVE S+ +EM
Sbjct: 554 MECFGKTERVEMAYSLFEEM 573
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D+ +S+ + K +N+ +I T N LI FG + ++ + +K +L N FTY
Sbjct: 153 DRVRSILDSMVK-SNVHGNISTVNILIGFFGN---TEDLQMCLRLVKKWDLKMNSFTYKC 208
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
L+ Y+ + + K ++Y ++ G D Y +LL A
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALA 249
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAY-MYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L+ E + + I TYN L+ Y M N LS+ L DL SP IVT+ +L
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML--DLMVRNKCSPDIVTFTSL 374
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + VD F+ I L N TY+ L+ G+ + EE++Q M + V
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVD 327
+PD TY +LL G +G L + +I+E L K +D
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R +D A LF E K +K+ + TYN+L+ G + L +D+
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+++T+N L+ VF + + ++E+ +SPN+ TYN L+ GY
Sbjct: 291 SR-EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ + +M PD T+ L++GY
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
KG+ G+++ + D E N + TYN+++ +G + L R ++ E
Sbjct: 166 KGLFLEGKVSEAVVLVDRMVE--NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME-ER 222
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N+ + TY+T+I R +D + F+E++ + +V TYN L+ G A W
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + M + ++P+ T+ +LL + G L ++Y+
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R + LA DL + +++K + TY+ ++ + +G D SLF++++ + I S+
Sbjct: 205 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG-IKSSV 263
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+L+ + + +++ + PNV T+N L+ ++ + E+Y+
Sbjct: 264 VTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKE 323
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
M + P+ TY L+ GY L + +L+
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C+ +R +G +++ + + R +A +T +G +G+
Sbjct: 376 KGYCMVKRVDDG---MKVFRNISKRGLVA--------------NAVTYSILVQGFCQSGK 418
Query: 169 INNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
I LA +LF E ++ L + TY LL NG +K +F DL+K + + IV
Sbjct: 419 IK---LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-SKMDLGIV 474
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + V+ F + + PNV TY +I+G + + + M
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ P+ TY L+R + G+L K+ E +K
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++A+ +N + D C+ L E N I+ +I T N +I+ F R + +
Sbjct: 95 FSAIARTKQFNLVLDFCKQL------ELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRGYA 307
+ P+ T+N LI G ++ GKV E + +M++ G PD TY ++ G
Sbjct: 149 VMKLGYEPDTTTFNTLIKGL---FLEGKVSEAVVLVDRMVENG-CQPDVVTYNSIVNGIC 204
Query: 308 HSGN 311
SG+
Sbjct: 205 RSGD 208
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
P LAL +LN + + Y+ I + +VD A +LF E NK ++ +
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVI---YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY++L+ G L D+ E I+P++VT+N+LI F + + E F
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDML-ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ ++ PN+ TYN LI G+ + ++I+ +M + +PD TY L+ G+ +
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E + + I TYN+L+ + + D+ Q +F L + P +VTYNTLI
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LMVSKDCLPDVVTYNTLI 387
Query: 234 SVFGRL-LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ F + +VD ME F+++ L N TY LI G+ A + +++ M + V
Sbjct: 388 NGFCKAKKVVDGME-LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ TY LL G +G L + ++E ++
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 11/301 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY A++ G D +L ++K I +V Y+T+I + VD F E
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEK-GKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + P+VFTY+ LI+ W + M + P+ T+ L+ +A G
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL- 369
L EK++ E+++ +D P I + + DR+ + + + L+ K+ P +
Sbjct: 326 LIEAEKLFDEMIQRSID----PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 381
Query: 370 --NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
N L+ + ++ ME + + V ++ +F+ + D K
Sbjct: 382 TYNTLINGFCKAKKVVDGME--LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ S G Y++ + ++E+ V + ++ K++ T+ IM G
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499
Query: 488 Q 488
+
Sbjct: 500 K 500
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ + D Q +F+ + + + P+I+TYNTL+ + ++ F+
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++ S + P+++TYN + G A GKVE +++ + V PD Y ++ G+
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKA---GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCK 532
Query: 309 SG 310
G
Sbjct: 533 KG 534
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN + G + LF L + + P ++ YNT+IS F + L + F
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG-VKPDVIAYNTMISGFCKKGLKEEAYTLF 543
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++K+ P+ TYN LI ++ E+ + M++ D +TY L+ H
Sbjct: 544 IKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY-GLVTDMLHD 602
Query: 310 GNLPR 314
G L +
Sbjct: 603 GRLDK 607
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL + S+ ++ M + G +P LA+E+L R+
Sbjct: 202 GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL---RKMEERN 258
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQ 210
+ +Y+ I + ++D A +LF E K K I TYN L+G + G D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 211 SLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
L RD+ K ISP++VT++ LI F G+L D + +E+ ++PN TYN L
Sbjct: 319 KLLRDMIKR-KISPNVVTFSVLIDSFVKEGKLREADQL---LKEMMQRGIAPNTITYNSL 374
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
I G+ + ++ +M + PD T+ +L+ GY + +
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 192 TYNALLGAYMY-NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYN+L+ + N L + Q + DL P I+T+N LI+ + + +D F+
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMV--DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFR 427
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + N TYN L+ G+ + ++++Q M + V PD +Y +LL G +G
Sbjct: 428 EMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNG 487
Query: 311 NLPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSK 343
L + +I+ E K +D + +I +C SK
Sbjct: 488 ELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASK 523
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 24/235 (10%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N L+ Y D LFR++ I+ + VTYNTL+ F + ++ + F
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANT-VTYNTLVQGFCQSGKLEVAKKLF 461
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ + P++ +Y L+ G K EI+ ++ + D Y++++ G ++
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNA 521
Query: 310 GNLPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ ++ L +D + + ++ + +C D + K + L R + E+ +
Sbjct: 522 SKVDDAWDLFCSLPLKGVKLDARAYNIMISELCR------KDSLSKADILFRKMTEEGHA 575
Query: 367 P--WLNVLLIRVYAKED-------CLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
P +LIR + +D +EEM+ S V+TV+++ ++SS
Sbjct: 576 PDELTYNILIRAHLGDDDATTAAELIEEMKSS-----GFPADVSTVKMVINMLSS 625
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 100/255 (39%), Gaps = 17/255 (6%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALE-------VLNWR--------RRQAGYGTPM 154
G CL R S V+ M ++G +P L LN + R G
Sbjct: 167 GLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQP 226
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLF 213
+ Y + + LA +L + +++K Y+ ++ +G D +LF
Sbjct: 227 NEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF 286
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+++ + I+TYNTLI F D +++ +SPNV T++ LI ++
Sbjct: 287 NEMEIKG-FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK 345
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +++ + M + P+T TY L+ G+ L ++ +L+ +
Sbjct: 346 EGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMT 405
Query: 334 IRAMICAYSKCSVTD 348
+I Y K + D
Sbjct: 406 FNILINGYCKANRID 420
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 131/314 (41%), Gaps = 35/314 (11%)
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+D LFRD+ + + P+++ +N L S + + + A ++++ ++ +++T +
Sbjct: 69 ADDAVDLFRDMIQSRPL-PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVM-----PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+I + Y G +M PDT + LL G R+ + E
Sbjct: 128 IMINCFCRCRKLS-----YAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE---CRVSEALE 179
Query: 321 LVKHHVDGKEFPLIRAM------ICAYSKCSVTDRIKKIEALMR--LIP-EKEYRPWLNV 371
LV V+ P + + +C K V+D + I+ ++ P E Y P LNV
Sbjct: 180 LVDRMVEMGHKPTLITLNTLVNGLCLNGK--VSDAVVLIDRMVETGFQPNEVTYGPVLNV 237
Query: 372 LLI--RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ + + L +ME E + V+ I+ + ++D N
Sbjct: 238 MCKSGQTALAMELLRKME-------ERNIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
E G++ Y++ + + + R ++ +L++M KI + TF ++ ++ G+
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKL 349
Query: 490 RKVNQVLGLMCKNG 503
R+ +Q+L M + G
Sbjct: 350 READQLLKEMMQRG 363
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 56/256 (21%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL R + ++ V LM + G P +ALE+LN ++
Sbjct: 150 GFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGA 209
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T G+ ++GR ++ AA + + + + + T+ AL+ ++ G D+ Q
Sbjct: 210 DVVTYNTLLTGLCYSGRWSD---AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQ 266
Query: 211 SLFR----------------------------------DLKKEANISPSIVTYNTLISVF 236
L++ DL P++VTYNTLIS F
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ +VD FQ + + ++FTYN LI GY +I+ M + V PD
Sbjct: 327 CKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDI 386
Query: 297 NTYLLLLRGYAHSGNL 312
T+ +LL G +G +
Sbjct: 387 ITHCILLHGLCVNGEI 402
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 189 TIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+I T+ +LL G + N + D + L ++ P++V YNTLI + ++
Sbjct: 140 SIVTFGSLLHGFCLVNRIGDAFSLVI--LMVKSGYEPNVVVYNTLIDGLCKNGELNIALE 197
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E++ L +V TYN L+ G + W + + M + PD T+ L+ +
Sbjct: 198 LLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFV 257
Query: 308 HSGNLPRMEKIY-ELVKHHVD 327
GNL +++Y E+++ VD
Sbjct: 258 KQGNLDEAQELYKEMIQSSVD 278
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
SR AL VL + + +T G RI + L ++ + +
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYE--PNVV 177
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
YN L+ NG + L +++K+ + +VTYNTL++ GR M
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEMEKKG-LGADVVTYNTLLTGLCYSGRWSDAARM--- 233
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ +++P+V T+ LI ++ + +E+Y+ M V P+ TY ++ G
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293
Query: 309 SGNLPRMEKIYELV 322
G L +K ++L+
Sbjct: 294 HGRLYDAKKTFDLM 307
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 28/210 (13%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C+ R + +LM G P V+ + +G+ +E G+K R+
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFP----NVVTYNTLISGFCKFRMVDE---GMKLFQRM 342
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ AD+F TYN L+ Y G +F + ++P I+T+
Sbjct: 343 SCEGFNADIF------------TYNTLIHGYCQVGKLRVALDIFCWMVSR-RVTPDIITH 389
Query: 230 NTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
L+ L + +E+A F ++++S + YN +I G A K E++
Sbjct: 390 CILLH---GLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCR 446
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+ V PD TY +++ G +G PR E
Sbjct: 447 LPVEGVKPDARTYTIMILGLCKNG--PRRE 474
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 64/337 (18%)
Query: 45 SFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRD--------EL---- 92
SFT +C +H +F + +R + E L + LT +S L EL
Sbjct: 450 SFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQF 509
Query: 93 ------------------LANVDDLDKVFRVLDE-----------------KGSCLFRRH 117
L LD+ FR+ E G C ++
Sbjct: 510 LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKL 569
Query: 118 SNGYAFVELMKQLGSRPR------LALEVLNWRRRQAGYG-------TPMTKEEYTKGIK 164
+ F++ M + G +P L + N + + M + YT +
Sbjct: 570 DEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVM 629
Query: 165 FAG--RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
G + + + F E +K+++ YN L+ AY +G L D+K +
Sbjct: 630 IDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG- 688
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
ISP+ TY +LI + V+ + F+E++ L PNVF Y LI GY KVE
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ + M + V P+ TY +++ GYA GN+ ++
Sbjct: 749 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 785
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 5/187 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I + V+ A LF++ + + T+N ++ G D+ +F++
Sbjct: 276 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE-AFMFKEKM 334
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P+++TY+ L+ R + +E+ PNV YN LI ++ A
Sbjct: 335 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 394
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLI 334
K EI +M + + ++TY L++GY +G N R+ K + +V+ F +
Sbjct: 395 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 454
Query: 335 RAMICAY 341
++C++
Sbjct: 455 ICLLCSH 461
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ R + +A +L + +K + TY +L+ ++ + LF +++
Sbjct: 661 YNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P++ Y LI +G+L + +E +E+ N+ PN TY +I GY
Sbjct: 721 MEG-LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNV 779
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + M+ ++PD+ TY + GY G +
Sbjct: 780 TEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGV 814
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F D + + P TY+ LI + V+ + + K + + P+V+TY+ +I G
Sbjct: 574 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 633
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
A + +E + M + V P+T Y L+R Y SG L ++ E +KH
Sbjct: 634 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKH 686
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 174 LAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
LA D+F ANK + + T N LL + + KC F + K +SP + + T
Sbjct: 222 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTA 279
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMK 288
I+ F + V+ F +++++ ++PNV T+N +I G M G+ +E + +M++
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL---GMCGRYDEAFMFKEKMVE 336
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
G + P TY +L++G + R+ Y ++K K FP
Sbjct: 337 RG-MEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTK-KGFP 375
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 116/317 (36%), Gaps = 48/317 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T NALL G D+ + +++ + V+YNTLIS +D E
Sbjct: 520 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDR-VSYNTLISGCCGKKKLDEAFMFLDE 578
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAH 308
+ L P+ +TY+ LI G + KVEE Q K ++PD TY +++ G
Sbjct: 579 MVKRGLKPDNYTYSILICGL---FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDG--- 632
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
C +R ++ + + K +P
Sbjct: 633 -----------------------------------CCKAERTEEGQEFFDEMMSKNVQPN 657
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V LIR Y + L M + + +HK ++ + V++
Sbjct: 658 TVVYNHLIRAYCRSGRLS-MALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 716
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G Y + + Y ++ ++E +L+EM + + +K T+ +M YA
Sbjct: 717 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 776
Query: 487 GQRRKVNQVLGLMCKNG 503
G + +++L M + G
Sbjct: 777 GNVTEASRLLNEMREKG 793
>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890,
mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1
SV=1
Length = 398
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 40/226 (17%)
Query: 154 MTKEEYT-KGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
M+KE + + I G+ + A +F E N+ K ++ ++NALL AY + D +
Sbjct: 106 MSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEE 165
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN-YLIAG 270
LF +L + +I P IV+YNTLI + A EI++ L P++ T+N L++
Sbjct: 166 LFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSS 225
Query: 271 YMTAW------MWGKVEE----------------------------IYQMMKAGPVMPDT 296
Y+ +W K+ E ++ +KA + PD
Sbjct: 226 YLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDV 285
Query: 297 NTYLLLLRGYAHSGNLPRMEKIY-ELVKH--HVDGKEFPLIRAMIC 339
++ ++RG + G + E Y E+VKH D F L+ +C
Sbjct: 286 FSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMC 331
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L E NK LK I T+N LL + G + + ++ + E N++ I TYN +
Sbjct: 199 AVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMV-EKNVAIDIRTYNARL 257
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F E+K S L P+VF++N +I G + + E Y+ +
Sbjct: 258 LGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYR 317
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD T+ LLL +G+ E EL K
Sbjct: 318 PDKATFALLLPAMCKAGDF---ESAIELFKE 345
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ + + +F DL P IVTY+ LI+ + + VD F+E
Sbjct: 352 TYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L PN TYN L+ G+ + +E++Q M + V P TY +LL G +G
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Query: 312 LPRMEKIYE 320
L + +I+E
Sbjct: 471 LNKALEIFE 479
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 23/269 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPM 154
G CL R S A V+ M ++ RP L E L R YG
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 208
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
+ Y + + N LA DLF + +++K ++ Y+ ++ + +G D SLF
Sbjct: 209 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 268
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+++ + I +VTY++LI D +E+ N+ P+V T++ LI ++
Sbjct: 269 NEMEMKG-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +E+Y M + PDT TY L+ G+ L ++++L+ G E +
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK--GCEPDI 385
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ I S C + K+++ MRL E
Sbjct: 386 VTYSILINSYC----KAKRVDDGMRLFRE 410
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+G++N A +LF E ++ + ++ TY LL NG +K +F ++K + ++
Sbjct: 433 SGKLNA---AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK-SRMTL 488
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
I YN +I VD + F + D + P+V TYN +I G + + ++
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLF 548
Query: 285 QMMKAGPVMPDTNTYLLLLRGY-AHSGNLPRMEKIYEL 321
+ MK PD TY +L+R + SG + +E I E+
Sbjct: 549 RKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ +Y D LFR++ + I P+ +TYNTL+ F + ++ + F
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLI-PNTITYNTLVLGFCQSGKLNAAKELF 443
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ + P+V TY L+ G K EI++ M+ + Y +++ G ++
Sbjct: 444 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 503
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 172 VDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
VD LF E ++K L TI TYN L+ + +G + + LF+++ + PS+VTY
Sbjct: 401 VDDGMRLFREISSKGLIPNTI-TYNTLVLGFCQSGKLNAAKELFQEMVSRG-VPPSVVTY 458
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
L+ ++ F++++ S ++ + YN +I G A ++ +
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE----------------LVKHHVDG----K 329
V PD TY +++ G G+L + ++ L++ H+ G
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLIS 578
Query: 330 EFPLIRAM-ICAYSKCSVT 347
LI M +C +S S T
Sbjct: 579 SVELIEEMKVCGFSADSST 597
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 145/340 (42%), Gaps = 18/340 (5%)
Query: 175 AADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
A DLF K + + T+ +++ Y G + C+++F + E + P+IV+YN
Sbjct: 302 ALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEG-LKPNIVSYNA 360
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + + + +IK + + P+V +Y L+ Y + GK +E++ MM+
Sbjct: 361 LMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKER 420
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+ TY L+ Y +G L +I+ ++ DG + P + ++ + CS + +
Sbjct: 421 RKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ--DGIK-PNVVSVCTLLAACSRSKKKV 477
Query: 352 KIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRI 405
++ ++ + LN I Y E+EK+I + K
Sbjct: 478 NVDTVLSAAQSRGIN--LNTAAYNSAIGSYINA---AELEKAIALYQSMRKKKVKADSVT 532
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++S R + + +++K E L + +Y S + Y+ Q +V E ES+ +M+
Sbjct: 533 FTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMK 592
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
+ + M +AY + K ++ M NG +
Sbjct: 593 MAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 632
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y++++ + + V E+ F ++K + P+V Y ++ Y + WGK E++ M
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEM 626
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSKCSV 346
+A + PD+ L+R + G + + +L++ KE P A+ +S C+
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE----KEIPFTGAVFFEIFSACNT 682
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLL----IRVYAKEDCLEEMEK 388
K+ L++++ Y P L++ L + ++ K +E M K
Sbjct: 683 LQEWKRAIDLIQMM--DPYLPSLSIGLTNQMLHLFGKSGKVEAMMK 726
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 110/303 (36%), Gaps = 41/303 (13%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + C ++F+ +K + N YN +I + R VD F E++ + P+ T
Sbjct: 121 GCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAET 180
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y+ LI + A W + M + P +TY L+ SGN + E+ K
Sbjct: 181 YDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW---REALEVCK 237
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383
D P + S + K + L+ + RP I +Y CL
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIY----CL 293
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---L 440
++ +S ++ MR KRAE CR
Sbjct: 294 SKLGQS-------SQALDLFNSMR------------------EKRAE------CRPDVVT 322
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S M +Y+ + +E +V + M + + ++ + AYA G VLG +
Sbjct: 323 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 382
Query: 501 KNG 503
+NG
Sbjct: 383 QNG 385
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + + + F D+K ISP T+NT+I+ F R +D E F E
Sbjct: 257 TYNLMLWGFFLSLRLETALRFFEDMKTRG-ISPDDATFNTMINGFCRFKKMDEAEKLFVE 315
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + + P+V +Y +I GY+ I++ M++ + P+ TY LL G +G
Sbjct: 316 MKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGK 375
Query: 312 LPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCS 345
+ + I + ++ H+ K+ + ++ + SK
Sbjct: 376 MVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAG 410
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+N ++ + D+ + LF ++K I PS+V+Y T+I + + VD F+
Sbjct: 291 ATFNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFE 349
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHS 309
E++ S + PN TY+ L+ G A + + I + M A + P D + +L LL + +
Sbjct: 350 EMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKA 409
Query: 310 GNL 312
G++
Sbjct: 410 GDM 412
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%)
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+ LI +G+ +V FQ++KD + + +YN L + + + + M
Sbjct: 188 FVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMV 247
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ V P +TY L+L G+ S L + +E +K + MI + + D
Sbjct: 248 SEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMD 307
Query: 349 RIKKIEALMR 358
+K+ M+
Sbjct: 308 EAEKLFVEMK 317
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 17/303 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNA 195
LE+ N + Y + G+ R+N+ A LF E A + L ++ TYN
Sbjct: 198 GLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND---AEQLFDEMLARRLLPSLITYNT 254
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y G +K + R+ K +I PS++T+NTL+ + +V+ E +E+KD
Sbjct: 255 LIDGYCKAGNPEKSFKV-RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL 313
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
P+ FT++ L GY + +Y+ V + T +LL G + +
Sbjct: 314 GFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKA 373
Query: 316 EKIY--ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK---KIEALMRLIPEKEYRPWLN 370
E+I E+ K V + + MI Y C D + KIEA+ + + ++ +
Sbjct: 374 EEILGREMAKGLVPNE--VIYNTMIDGY--CRKGDLVGARMKIEAMEKQGMKPDHLAY-- 427
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
LIR + + +E EK +N + K +V ++ Y R DK + +K E
Sbjct: 428 NCLIRRFCELGEMENAEKEVN-KMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEME 486
Query: 431 SAG 433
G
Sbjct: 487 DNG 489
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 36/179 (20%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ G+++ A DL E + K LK + TYN+L+ Y + G +C +L+ ++K+ +
Sbjct: 573 GLSMTGKLSE---AEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKR-S 628
Query: 221 NISPSIVTYNTLISV------------FGRL-----LLV-----------DHMEAAF--- 249
I P++ TY+ LIS+ FG + LLV ME AF
Sbjct: 629 GIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQ 688
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ + ++ + TYN LI G + +V + M A + P+ +TY ++++G+
Sbjct: 689 KQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCE 747
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 201 MYNGLSDKC------QSLFRDLKK--EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+YN L D C + FR K+ + I ++VTYNTLI + E EI
Sbjct: 531 IYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI 590
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
L P+VFTYN LI+GY A + +Y+ MK + P TY LL+
Sbjct: 591 SRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI 641
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 48/240 (20%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLL----- 240
++ TYN L+G Y DKC + ++++ + P++V+Y TLI+ +LL
Sbjct: 458 SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTM-PNVVSYGTLINCLCKGSKLLEAQIV 516
Query: 241 ------------------LVD------HMEAAF---QEIKDSNLSPNVFTYNYLIAGYMT 273
L+D +E AF +E+ + N+ TYN LI G
Sbjct: 517 KRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSM 576
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ E++ + + PD TY L+ GY +GN+ R +YE +K G + P
Sbjct: 577 TGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS--GIK-PT 633
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIN 391
++ S C+ + IE RL E +P L V ++ YA +MEK+ N
Sbjct: 634 LKTYHLLISLCTK----EGIELTERLFGEMSLKPDLLVYNGVLHCYAVHG---DMEKAFN 686
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 205 LSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
LSD K LF +K + I PS+ YN LI + ++ E F E+ L P++
Sbjct: 192 LSDVGKGLELFNRMKHD-RIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLI 250
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
TYN LI GY A K ++ + MKA + P T+ LL+G +G + E + + +
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 323 K 323
K
Sbjct: 311 K 311
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E++ PS Y I +L V F +K + P+VF YN LI G
Sbjct: 172 ESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMN 231
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK-HHVD 327
E+++ M A ++P TY L+ GY +GN + K+ E +K H++
Sbjct: 232 DAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIE 281
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ Y G + ++K+ + P + YN LI F L +++ E ++
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQG-MKPDHLAYNCLIRRFCELGEMENAEKEVNKM 450
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
K +SP+V TYN LI GY + + K +I + M+ MP+ +Y L+
Sbjct: 451 KLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLI 501
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+++ LF E +K LK + TYN L+ AY D ++L R+++ + + P++ +
Sbjct: 393 NHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREME-DLGLEPNVKS 451
Query: 229 YNTLISVFGRLLLVDHMEA-AFQEIKDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQM 286
Y LIS +GR + M A AF +K L P+ +Y LI Y ++ W +M
Sbjct: 452 YTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEM 511
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
K G + P TY +L + SG+ ++ +I++L+
Sbjct: 512 CKEG-IKPSVETYTSVLDAFRRSGDTGKLMEIWKLM 546
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 133/334 (39%), Gaps = 56/334 (16%)
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
++F + + K +K + + L+ ++ GL ++ + +++K+ S +IV YNTL+
Sbjct: 330 EIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIV-YNTLMDA 388
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ + ++ +E F E++D L P+ TYN L+ Y VE + + M+ + P+
Sbjct: 389 YNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPN 448
Query: 296 TNTYLLLLRGYAHSGNLP--------RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
+Y L+ Y + + RM+K+ H A+I AYS
Sbjct: 449 VKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHS-------YTALIHAYSVSG-- 499
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM-EKSINDAFEHKTSVTTVRIM 406
W + YA EEM ++ I + E TSV
Sbjct: 500 --------------------WHE----KAYA---SFEEMCKEGIKPSVETYTSV------ 526
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
+ ++ R KL K + R Y++ + +A Q E V+ E
Sbjct: 527 ---LDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSK 583
Query: 467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S T+ ++ AYA GQ K+ Q+L M
Sbjct: 584 MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMA 617
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
F E + +K ++ TY ++L A+ +G + K +++ + +E I + +TYNTL+ F
Sbjct: 508 FEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLRE-KIKGTRITYNTLLDGFA 566
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ L E L P+V TYN L+ Y K+ ++ + M A + PD+
Sbjct: 567 KQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSI 626
Query: 298 TYLLLLRGYAHSGNLPR 314
TY ++ + + R
Sbjct: 627 TYSTMIYAFVRVRDFKR 643
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL + GL + + + + K + PS++TYN L++ + R + +E
Sbjct: 557 TYNTLLDGFAKQGLYIEARDVVSEFSK-MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKE 615
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ NL P+ TY+ +I ++ + + ++MM +PD +Y
Sbjct: 616 MAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSY 663
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 114/291 (39%), Gaps = 14/291 (4%)
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
+ L ++ GR + D++ + D +V YN I+G + + E+Y+ M
Sbjct: 242 SVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDK 301
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
V PD T +L+ +G + +++E+ + + K + + K S D
Sbjct: 302 INVYPDNVTCAILITTLRKAGRSAK--EVWEIFEKMSE-KGVKWSQDVFGGLVK-SFCDE 357
Query: 350 IKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEH--KTSVTTV 403
K EAL+ ++ N + L+ Y K + +EE+E + + K S T
Sbjct: 358 GLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATY 417
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES-VLK 462
I+ + +Y R D + ++ E G Y + Y +++ +M +
Sbjct: 418 NIL---MDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFL 474
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
M+ + S ++ + +AY+ G K MCK G V + S
Sbjct: 475 RMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTS 525
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 7/195 (3%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L+ E + + + TYN+L+ + +G + +F DL P +VTYNTLI
Sbjct: 273 ARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMF-DLMVSKGCFPDVVTYNTLI 331
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F E+ L + FTYN LI GY A ++++ M V
Sbjct: 332 TGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVS 391
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
PD TY +LL ++G + + + + +L K +D +I I C TD++K+
Sbjct: 392 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD---VDIITYNIIIQGLCR-TDKLKE 447
Query: 353 IEALMRLIPEKEYRP 367
L R + K +P
Sbjct: 448 AWCLFRSLTRKGVKP 462
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGL 205
Q G T G AG++N +A +F + + I TYN LL NG
Sbjct: 353 QGLVGDAFTYNTLIHGYCQAGKLN---VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+K + DL+K + + I+TYN +I R + F+ + + P+ Y
Sbjct: 410 IEKALVMVEDLQK-SEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYI 468
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+I+G + + +++ + MK MP Y LR + S
Sbjct: 469 TMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTS 512
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
+ +G +F ++ VD + D F N + YN ++ N + +F ++K
Sbjct: 159 FCQGNRFQEAVSLVD-SMDGFGFVPN-----VVIYNTVINGLCKNRDLNNALEVFYCMEK 212
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ I VTYNTLIS +++ + PNV + LI ++
Sbjct: 213 KG-IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 271
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---R 335
+ +Y+ M V+P+ TY L+ G+ G L + +++L+ V FP +
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM---VSKGCFPDVVTYN 328
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+I + K K++E M+L E Y+
Sbjct: 329 TLITGFCKS------KRVEDGMKLFCEMTYQ 353
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 67/131 (51%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+NAL+ A++ G + + L+ ++ K + P +V YNTLI F + V+ F+E+
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREM 382
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
L N TY LI G+ A + +++ M + V PD TY +LL G ++GN+
Sbjct: 383 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNV 442
Query: 313 PRMEKIYELVK 323
++E ++
Sbjct: 443 ETALVVFEYMQ 453
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY A++ G D +L ++K I +V YNT+I + +D F +
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEK-GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNK 275
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+VFTYN LI+ W + M + PD + L+ + G
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335
Query: 312 LPRMEKIY-ELVK 323
L EK+Y E+VK
Sbjct: 336 LVEAEKLYDEMVK 348
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 5/180 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +EV ++ G +T YT I + + D A +F + + + I
Sbjct: 371 RVEEGMEVFREMSQRGLVGNTVT---YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL NG + +F ++K ++ IVTY T+I + V+ F
Sbjct: 428 TYNILLDGLCNNGNVETALVVFEYMQKR-DMKLDIVTYTTMIEALCKAGKVEDGWDLFCS 486
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV TY +++G+ + + + ++ MK +P++ TY L+R G+
Sbjct: 487 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGD 546
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 98/283 (34%), Gaps = 48/283 (16%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
PSIVT N+L++ F + A ++ + P+ T+ L+ G +
Sbjct: 142 GPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVA 201
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGN-------LPRMEK--------IYELV----- 322
+ + M PD TY ++ G G L +MEK IY +
Sbjct: 202 LVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC 261
Query: 323 --KHHVDGKEF-----------------PLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
KH D + PLI + +C Y + S R L+ + EK
Sbjct: 262 KYKHMDDAFDLFNKMETKGIKPDVFTYNPLI-SCLCNYGRWSDASR------LLSDMLEK 314
Query: 364 EYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
P L LI + KE L E EK ++ + K V ++ + + V++
Sbjct: 315 NINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEE 374
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+ G Y + + + R + + V K+M
Sbjct: 375 GMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 417
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D LF D+ K PSIV ++ L+S ++ D + + +++++ +S N++TY+
Sbjct: 57 DDAIGLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 267 LIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
I + + + + + +MMK G P T LL G+ H GN R+ + LV
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLG-YGPSIVTLNSLLNGFCH-GN--RISEAVALVDQM 171
Query: 326 VD 327
V+
Sbjct: 172 VE 173
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 9/195 (4%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ N + A +F+ K + ++ TYN+L M S K S D + ++I P +
Sbjct: 259 KAGNYEKARKVFSSMVGKGVPQSTVTYNSL----MSFETSYKEVSKIYDQMQRSDIQPDV 314
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y LI +GR + + F+E+ D+ + P YN L+ + + M + + +++
Sbjct: 315 VSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKS 374
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKC 344
M+ + PD +Y +L Y ++ ++ EK ++ +K VDG E ++ +I Y+K
Sbjct: 375 MRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK--VDGFEPNIVTYGTLIKGYAKA 432
Query: 345 SVTDRIKKIEALMRL 359
+ +++ ++ MRL
Sbjct: 433 NDVEKMMEVYEKMRL 447
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 139/330 (42%), Gaps = 46/330 (13%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY G + + + L K + +P++++Y L+ +GR ++ EA F+ ++ S
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGS-TPNVISYTALMESYGRGGKCNNAEAIFRRMQSS 203
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLLRGYAHSGNL 312
P+ TY ++ ++ + + EE+++ + K P+ PD Y +++ Y +GN
Sbjct: 204 GPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 263
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--N 370
+ K++ + GK P ++ + S S K++ + + + +P +
Sbjct: 264 EKARKVF----SSMVGKGVP--QSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSY 317
Query: 371 VLLIRVYAK----EDCLEEMEKSIN--------------DAF-------EHKTSVTTVRI 405
LLI+ Y + E+ L E+ ++ DAF + KT ++R
Sbjct: 318 ALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR 377
Query: 406 MR---------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
R ++S+Y + ++ F KR + G+ Y + + YA VE+
Sbjct: 378 DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEK 437
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATC 486
M V ++M I ++ + A C
Sbjct: 438 MMEVYEKMRLSGIKANQTILTTIMDASGRC 467
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 18/289 (6%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S + + LI+ +G+L + E + +PNV +Y L+ Y E I+
Sbjct: 138 SEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIF 197
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL------IRAMI 338
+ M++ P TY ++L+ + E+++E + +D K+ PL MI
Sbjct: 198 RRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETL---LDEKKSPLKPDQKMYHMMI 254
Query: 339 CAYSKCSVTDRIKKIEALM--RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
Y K ++ +K+ + M + +P+ V + + E +E+ K I D +
Sbjct: 255 YMYKKAGNYEKARKVFSSMVGKGVPQS------TVTYNSLMSFETSYKEVSK-IYDQMQR 307
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V ++ +Y R ++ + + AG R Y+ + +A VE+
Sbjct: 308 SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 367
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
++V K M +I ++ M AY + + +G++
Sbjct: 368 AKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFE 416
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y +L AY+ + + F+ +K + P+IVTY TLI + + V+ M +++
Sbjct: 386 SYTTMLSAYVNASDMEGAEKFFKRIKVDG-FEPNIVTYGTLIKGYAKANDVEKMMEVYEK 444
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
++ S + N ++ +G Y+ M++ V PD +LL
Sbjct: 445 MRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLL 496
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
L +D+ + N +L T +NAL+ A++ G + + L+ D+ K + I P I TYN+L+
Sbjct: 317 LLSDMIEKKINPNLVT---FNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSLV 372
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F +D + F+ + + P+V TYN LI G+ + E+++ M ++
Sbjct: 373 NGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 432
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
DT TY L++G H G+ +K+++
Sbjct: 433 GDTVTYTTLIQGLFHDGDCDNAQKVFK 459
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+VD A +LF E K ++ + TY++L+ G L D+ E I+P++VT+
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKINPNLVTF 333
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N LI F + E + ++ ++ P++FTYN L+ G+ K +++++ M +
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD TY L++G+ S + +++ + H
Sbjct: 394 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 428
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN+L+ + + DK + +F + + P +VTYNTLI F + V+ F
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMF-EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L + TY LI G +++++ M + V PD TY +LL G ++
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483
Query: 310 GNLPRMEKIYE 320
G L + ++++
Sbjct: 484 GKLEKALEVFD 494
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 25/259 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C +R S+ A V+ M ++G RP +T G+ +
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRP-----------------DTITFTTLIHGLFLHNKA 206
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ D + + + TY ++ G +D +L ++ A I +V +
Sbjct: 207 SEAVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDTDLALNLLNKME-AAKIEADVVIF 263
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I + VD F+E++ + PNV TY+ LI+ + W ++ M
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+ T+ L+ + G EK+Y +++K +D P I + + D
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID----PDIFTYNSLVNGFCMHD 379
Query: 349 RIKKIEALMRLIPEKEYRP 367
R+ K + + + K+ P
Sbjct: 380 RLDKAKQMFEFMVSKDCFP 398
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C +R +G EL +++ R + G +T +G+ G
Sbjct: 408 KGFCKSKRVEDG---TELFREMSHRGLV--------------GDTVTYTTLIQGLFHDGD 450
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N A +F + + + I TY+ LL NG +K +F D +++ I I
Sbjct: 451 CDN---AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIY 506
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + VD F + + PNV TYN +I+G + + + + + M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGN 311
K +P++ TY L+R + G+
Sbjct: 567 KEDGPLPNSGTYNTLIRAHLRDGD 590
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + + + LFR++ + + VTY TLI D+ + F++
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT-VTYTTLIQGLFHDGDCDNAQKVFKQ 460
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P++ TY+ L+ G K E++ M+ + D Y ++ G +G
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Query: 312 L 312
+
Sbjct: 521 V 521
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 11/327 (3%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
G Y +L +++ D LF + K + PSIV +N L+S ++ D + + +
Sbjct: 51 GDYREILRNGLHDMKLDDAIGLFGGMVKSRPL-PSIVEFNKLLSAIAKMKKFDVVISLGE 109
Query: 251 EIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ + ++TYN LI + + + + + +MMK G P T LL GY H
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLG-YEPSIVTLSSLLNGYCHG 168
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
R+ LV V+ P + ++ + AL+ + ++ +P L
Sbjct: 169 ---KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 225
Query: 370 ---NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V++ + + D ++ ++ + E V I I+ S + VD N
Sbjct: 226 VTYGVVVNGLCKRGD--TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K E+ G R Y S + S R + +L +M KI+ + TF + A+
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 487 GQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G+ + ++ M K D + + S
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNS 370
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G NN L A ++F +K I Y ++ G D LF L
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P++VTYNT+IS L+ A +++K+ PN TYN LI ++
Sbjct: 532 SLKG-VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
E+ + M++ + D +T + L+ H G L +
Sbjct: 591 KAASAELIREMRSCRFVGDAST-IGLVANMLHDGRLDK 627
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 30/289 (10%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
E LN G + + Y + ++ + A D+ E A+ +K + TYNALL
Sbjct: 427 EALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALL 486
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
G Y G D+ + +F ++K+E ++ P+++TY+TLI + + L F+E K + L
Sbjct: 487 GGYGKQGKYDEVKKVFTEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGL 545
Query: 258 SPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+V Y+ LI + G V I +M K G + P+ TY ++ + S + R
Sbjct: 546 RADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGRSATMDRSA 604
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV 376
+ +G P + + A ++ T+ + I+ +L E R
Sbjct: 605 D-------YSNGGSLPFSSSALSALTE---TEGNRVIQLFGQLTTESNNR---------- 644
Query: 377 YAKEDCLEEMEK--SINDAFE--HKTSVT-TVRIMRCIVSSYFRCNAVD 420
+DC E M++ I + F H+ + V I+++ RCN+ +
Sbjct: 645 -TTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFE 692
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/293 (19%), Positives = 119/293 (40%), Gaps = 2/293 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNA++ A G+ K + F D + + P +T+N+L++V R L + F E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + +VF+YN L+ EI M +MP+ +Y ++ G+A +G
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ +++ + ++ Y+K ++ I M + K+ N
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL Y K+ +E++K + + + + + ++ Y + + + +S
Sbjct: 485 LL-GGYGKQGKYDEVKKVFTE-MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKS 542
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
AG R LY + + V S++ EM I + T+ + A+
Sbjct: 543 AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFG 595
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 1/186 (0%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R LA E ++ R YG K ++ I R A F ++ +
Sbjct: 198 RAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIV 257
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ + G + + +F+++K A I P++ TY+ +I R + F ++
Sbjct: 258 YTNLVRGWCRAGEISEAEKVFKEMKL-AGIEPNVYTYSIVIDALCRCGQISRAHDVFADM 316
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
DS +PN T+N L+ ++ A KV ++Y MK PDT TY L+ + NL
Sbjct: 317 LDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENL 376
Query: 313 PRMEKI 318
K+
Sbjct: 377 ENAVKV 382
>sp|Q9XIM8|PP155_ARATH Pentatricopeptide repeat-containing protein At2g15980
OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1
Length = 498
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 152/342 (44%), Gaps = 59/342 (17%)
Query: 17 LQRLQRHSSKPKTLPPLSVFTLTKSPNHS-----FTR--DLCAPATHTVFPTLVRLLSET 69
L+ LQ P +++ L +P+ S FTR LC+ TH+ TL+ +LS +
Sbjct: 61 LRSLQPSGFTPSQFSEITL-CLRNNPHLSLRFFLFTRRYSLCSHDTHSC-STLIHILSRS 118
Query: 70 LTYPDARVRKDLTQTVS-ALRDELLANVDDLD---KVFRVLDEK---------------G 110
R++ ++ + ALR L A +D D KVFR L +
Sbjct: 119 ------RLKSHASEIIRLALR--LAATDEDEDRVLKVFRSLIKSYNRCGSAPFVFDLLIK 170
Query: 111 SCLFRRHSNGYAFVELMKQLGSRP---------RLALEVLNWRRRQAGYGTPMTKEEYTK 161
SCL + +G V M++L SR L EV RRR A G M +E +
Sbjct: 171 SCLDSKEIDGAVMV--MRKLRSRGINAQISTCNALITEV--SRRRGASNGYKMYREVF-- 224
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
G+ D++ D + K T+N+++ ++ G ++ + ++R++++E
Sbjct: 225 GLD--------DVSVDEAKKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVG 276
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
SP++ +YN L+ + L+ E ++E+K + ++ YN +I G + + K +
Sbjct: 277 CSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAK 336
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
E+++ M + TY L+ GY +G++ +Y +K
Sbjct: 337 ELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMK 378
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL + + ++ M + G +P LA+E+L R+
Sbjct: 202 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL---RKMEERN 258
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQ 210
+ +Y+ I + ++D A +LF E K + T I TYN L+G + G D
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L RD+ K I+P++VT++ LI F + + E +E+ ++P+ TY LI G
Sbjct: 319 KLLRDMIKR-KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ K ++ +M + P+ T+ +L+ GY +
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 416
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 20/248 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL R S V+ M ++G +P L +T G+ +G+
Sbjct: 167 GLCLEGRVSEALELVDRMVEMGHKPDL-----------------ITINTLVNGLCLSGKE 209
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
L D E + TY +L +G + L R ++ E NI V Y
Sbjct: 210 AEAMLLIDKMVEYGCQ--PNAVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKY 266
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
+ +I + +D+ F E++ ++ N+ TYN LI G+ A W ++ + M
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 326
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+ P+ T+ +L+ + G L E++++ + H + ++I + K + D+
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 350 IKKIEALM 357
++ LM
Sbjct: 387 ANQMVDLM 394
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 5/202 (2%)
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGA 199
L R+ + G Y I+ + +++A +LF E ++ + I TY LL
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
NG S+K +F ++K + + I YN +I VD F + + P
Sbjct: 483 LCDNGESEKALEIFEKIEK-SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 541
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
V TYN +I G + E +++ M+ PD TY +L+R + G+ + K+
Sbjct: 542 GVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLI 601
Query: 320 ELVKH---HVDGKEFPLIRAMI 338
E +K VD ++ M+
Sbjct: 602 EELKRCGFSVDASTIKMVIDML 623
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ + DK + DL P+I T+N LI+ + + +D F++
Sbjct: 370 TYTSLIDGFCKENHLDKANQMV-DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + TYN LI G+ +E++Q M + V P+ TY +LL G +G
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
+ +I+E + K +D + +I +C SK
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 523
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 2/152 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + N++D A + +K I T+N L+ Y D LFR +
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ + VTYNTLI F L ++ + FQE+ + PN+ TY L+ G
Sbjct: 431 LRGVVADT-VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
K EI++ ++ + D Y +++ G ++
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 521
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+VD A +LF E K ++ + TY++L+ G L D+ E I+P++VT+
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKINPNLVTF 258
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N LI F + E ++ ++ P++FTYN LI G+ K +++++ M +
Sbjct: 259 NALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS 318
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD +TY L++G+ S + +++ + H
Sbjct: 319 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
L +D+ + N +L T +NAL+ A++ G + + L D+ K + I P I TYN+LI
Sbjct: 242 LLSDMIEKKINPNLVT---FNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSLI 297
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F +D + F+ + + P++ TYN LI G+ + E+++ M ++
Sbjct: 298 NGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 357
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
DT TY L++G H G+ +K+++
Sbjct: 358 GDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN+L+ + + DK + +F + + P + TYNTLI F + V+ F
Sbjct: 290 IFTYNSLINGFCMHDRLDKAKQMF-EFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 348
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L + TY LI G +++++ M + V PD TY +LL G ++
Sbjct: 349 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408
Query: 310 GNLPRMEKIYE 320
G L + ++++
Sbjct: 409 GKLEKALEVFD 419
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 125/327 (38%), Gaps = 28/327 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C +R S+ A V+ M ++G RP +T G+ +
Sbjct: 89 GYCHGKRISDAVALVDQMVEMGYRP-----------------DTITFTTLIHGLFLHNKA 131
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ D + + + TY ++ G D +L ++ A I +V +
Sbjct: 132 SEAVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIF 188
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I + VD F+E++ + PNV TY+ LI+ + W ++ M
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+ T+ L+ + G EK++ +++K +D F ++I + + D
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY-NSLINGF---CMHD 304
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
R+ K + + + K+ P L+ LI+ + K +E+ + + H+ V
Sbjct: 305 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFRE-MSHRGLVGDTVTY 363
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAG 433
++ F D K+ S G
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C +R +G EL +++ R + G +T +G+ G
Sbjct: 333 KGFCKSKRVEDG---TELFREMSHRGLV--------------GDTVTYTTLIQGLFHDGD 375
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N A +F + + + I TY+ LL NG +K +F D +++ I I
Sbjct: 376 CDN---AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIY 431
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + VD F + + PNV TYN +I+G + + + + + M
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 491
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGN 311
K +PD+ TY L+R + G+
Sbjct: 492 KEDGPLPDSGTYNTLIRAHLRDGD 515
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 2/144 (1%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A +F +K + TYN L+ + + + LFR++ + + VT
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT-VT 362
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y TLI D+ + F+++ + P++ TY+ L+ G K E++ M+
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 422
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNL 312
+ D Y ++ G +G +
Sbjct: 423 KSEIKLDIYIYTTMIEGMCKAGKV 446
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 10/294 (3%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEE 282
PSI +N L+S ++ D + + ++++ +S N++TYN LI + + + +
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ +MMK G P T LL GY H R+ LV V+ P
Sbjct: 68 LGKMMKLG-YEPSIVTLSSLLNGYCHG---KRISDAVALVDQMVEMGYRPDTITFTTLIH 123
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE-EMEKSIN--DAFEHKTS 399
+ ++ + AL+ + ++ +P N++ V C +++ + N + E
Sbjct: 124 GLFLHNKASEAVALVDRMVQRGCQP--NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 181
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
V I I+ S + VD N K E+ G R Y S + S R +
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+L +M KI+ + TF + A+ G+ + ++ M K D + + S
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G NN L A ++F +K I Y ++ G D LF L
Sbjct: 397 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 456
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P++VTYNT+IS L+ A +++K+ P+ TYN LI ++
Sbjct: 457 SLKG-VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
E+ + M++ + D +T + L+ H G L +
Sbjct: 516 KAASAELIREMRSCRFVGDAST-IGLVANMLHDGRLDK 552
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 119/282 (42%), Gaps = 33/282 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK G P + Y I +I
Sbjct: 596 GFCKCGKVNKAYQLLEEMKTKGFEPTVV--------------------TYGSVIDGLAKI 635
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA +K ++ + Y++L+ + G D+ + +L ++ ++P++ T
Sbjct: 636 DRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG-LTPNLYT 694
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N+L+ + ++ FQ +K+ +PN TY LI G + K +Q M+
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P T +Y ++ G A +GN+ +++ K + + AMI S +
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGN--- 811
Query: 349 RIKKIEALMRLIPEKEYR--PWLN---VLLIRVYAKEDCLEE 385
+ ++A L E R P N V+L+ K DCLE+
Sbjct: 812 --RAMDAF-SLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQ 850
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 120 GYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
GY V++M++ RP + YT I +N+ D+ LF
Sbjct: 152 GYDVVQMMRKFKFRPAFS--------------------AYTTLIGAFSAVNHSDMMLTLF 191
Query: 180 AEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ + T+ + L+ + G D SL ++K +++ IV YN I FG+
Sbjct: 192 QQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSFGK 250
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+ VD F EI+ + L P+ TY +I A + E+++ ++ +P T
Sbjct: 251 VGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYA 310
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
Y ++ GY +G + ++ Y L++ P + A C
Sbjct: 311 YNTMIMGYGSAG---KFDEAYSLLERQRAKGSIPSVIAYNC 348
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G++ VD A ++ + + +T Y +L+ + +G + +++D+ + N SP
Sbjct: 458 GKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ-NCSPD 516
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+ NT + + + A F+EIK P+ +Y+ LI G + A + E++
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK + DT Y +++ G+ G ++ K Y+L++ + K F + Y S
Sbjct: 577 SMKEQGCVLDTRAYNIVIDGFCKCG---KVNKAYQLLE-EMKTKGF---EPTVVTYG--S 627
Query: 346 VTDRIKKI----EALMRLIPEKEYRPWLNVLL 373
V D + KI EA M K R LNV++
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 22/236 (9%)
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+YN L+ + +++I M P NT + ++ G + L + +++
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKE 380
+ F +I A+S + +D + L + + E Y P +++ LIR +AKE
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMML---TLFQQMQELGYEPTVHLFTTLIRGFAKE 216
Query: 381 -------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
L+EM+ S DA + + + S+ + VD F E+ G
Sbjct: 217 GRVDSALSLLDEMKSSSLDA--------DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQ 488
+ Y S + + R++E + + +E N ++ C+ + M Y + G+
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT-YAYNTMIMGYGSAGK 323
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y+ L+ + G +++ LF +K++ + + YN +I F + V+ +E
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDT-RAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K P V TY +I G + +++ K+ + + Y L+ G+ G
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF---GK 669
Query: 312 LPRMEKIYELVKH 324
+ R+++ Y +++
Sbjct: 670 VGRIDEAYLILEE 682
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY++L+ + + D+ + +F +L + P++VTYNTLI F + VD F
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L N TY LI G+ A + +++ M + V+PD TY +LL G ++
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNN 479
Query: 310 GNLPRMEKIYELVK 323
G + ++E ++
Sbjct: 480 GKVETALVVFEYLQ 493
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 121/302 (40%), Gaps = 13/302 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G D SL + ++ + I P +V YNT+I V+ F E
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + PNV TYN LI W + M + P+ T+ L+ + G
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E++K +D F ++I + + DR+ + + + L+ K+ P N
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTY-SSLINGF---CMHDRLDEAKHMFELMISKDCFP--N 395
Query: 371 VL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V+ LI+ + K ++E + + + TV ++ +F+ D
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV-TYTTLIHGFFQARECDNAQIVF 454
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K+ S G Y + + +VE V + ++ K++ T+ IM
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA 514
Query: 487 GQ 488
G+
Sbjct: 515 GK 516
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK + VD +LF E + + L TY L+ + D Q +F+ +
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P I+TY+ L+ V+ F+ ++ S + P+++TYN +I G A
Sbjct: 459 SDG-VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA--- 514
Query: 278 GKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
GKVE +++ + V P+ TY ++ G+ G
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKG 550
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L I TY+ LL NG + +F L++ + + P I TYN +I + V+
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQR-SKMEPDIYTYNIMIEGMCKAGKVEDGW 521
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F + + PNV TY +++G+ + + + +++ MK +PD+ TY L+R +
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAH 581
Query: 307 AHSGN 311
G+
Sbjct: 582 LRDGD 586
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ G + LF L + + P++VTY T++S F R L + +A F
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG-VKPNVVTYTTMMSGFCRKGLKEEADALF 559
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+K+ P+ TYN LI ++ E+ + M++ + D +T + L+ H
Sbjct: 560 REMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAST-IGLVTNMLHD 618
Query: 310 GNLPR 314
G L +
Sbjct: 619 GRLDK 623
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D +LF D+ K PSIV ++ L+S ++ D + + +++++ +S N++TY+
Sbjct: 63 DDAVNLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 267 LIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
LI + + + + + +MMK G PD T LL G+ H GN R+ LV
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLG-YEPDIVTLNSLLNGFCH-GN--RISDAVSLVGQM 177
Query: 326 VD 327
V+
Sbjct: 178 VE 179
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E + I TY++L+ + D+ +F DL +V+YNTLI
Sbjct: 279 AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLI 337
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F+E+ L N TYN LI G+ A K +E + M +
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS 397
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
PD TY +LL G +G L + I+E
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFE 424
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 112/287 (39%), Gaps = 15/287 (5%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P IV YN +I + V+ F+EI+ + PNV TY L+ G + W
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAM 337
+ M + P+ TY LL + +G + ++++ E+V+ +D P I
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID----PDIVTY 298
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+ + DRI + + L+ K +V+ LI + K +E+ K +
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLA--DVVSYNTLINGFCKAKRVEDGMKLFRE- 355
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ V+ ++ +F+ VDK F + + G Y+ +
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+E+ + ++M+ ++D T+ + G KV + L C
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG---KVEEAWSLFC 459
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+VD A + F++ + I TYN LLG NG +K +F D++K + IVT
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVT 437
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y T+I + V+ + F + L P++ TY +++G T + +VE +Y MK
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Query: 289 AGPVMPDTNT 298
+M + T
Sbjct: 498 QEGLMKNDCT 507
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 178 LFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E + + L TYN L+ + G DK Q F + ISP I TYN L+
Sbjct: 352 LFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD-FFGISPDIWTYNILL--- 407
Query: 237 GRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAG 290
G L +E A F++++ + ++ TY +I G GKVEE + + +
Sbjct: 408 GGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT---GKVEEAWSLFCSLSLK 464
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ PD TY ++ G G L +E +Y +K
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ D A LF + ++ + TY+ L+ G D+ F++LK E+ ++P
Sbjct: 937 GKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK-ESGLNPD 995
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+V YN +I+ G+ ++ F E+K S ++P+++TYN LI A M + +IY
Sbjct: 996 VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
++ + P+ T+ L+RGY+ SG + E Y + + V G P
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSG---KPEHAYAVYQTMVTGGFSP 1100
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF ++K I+P + TYN+LI G +V+ + EI+ + L PNVFT+N LI GY
Sbjct: 1018 LFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ +YQ M G P+T TY
Sbjct: 1078 SLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 27/356 (7%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219
I+++ + NNV A LF E K L + TYN L+G + + + Q +F +K
Sbjct: 756 IRYSCKHNNVSGARTLF-EKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
I P + TYN L+ +G+ +D + ++E+ N T+N +I+G + A G
Sbjct: 815 GCI-PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKA---GN 870
Query: 280 VEEI----YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
V++ Y +M P TY L+ G + SG L ++++E + + +
Sbjct: 871 VDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYN 930
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
+I + K D AL + + ++ RP L + V DCL M +++
Sbjct: 931 ILINGFGKAGEADAAC---ALFKRMVKEGVRPDLKTYSVLV----DCLC-MVGRVDEGLH 982
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDK-------LANFVKRAESAGWRLCRSLYHSKMVMY 448
+ + + +V N + K L F + S G Y+S ++
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
VEE + E++ ++ + TF + Y+ G+ V M G+
Sbjct: 1043 GIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1098
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 134/320 (41%), Gaps = 13/320 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TY++L+ D L ++++ + P++ T+ I V GR ++
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMET-LGLKPNVYTFTICIRVLGRAGKINEAYEI 280
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + D P+V TY LI TA +E+++ MK G PD TY+ LL ++
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL--MR---LIPEK 363
+ +L +++ + ++ DG ++ I + C + + + L MR ++P
Sbjct: 341 NRDLDSVKQFWSEMEK--DGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
L L+RV+ +D L E+ ++ T+ T + + S +A++
Sbjct: 399 HTYNTLICGLLRVHRLDDAL-ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 457
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ + C + +S A R E + + +++ + T+ +M Y
Sbjct: 458 KMKTKGIAPNIVACNASLYS----LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513
Query: 484 ATCGQRRKVNQVLGLMCKNG 503
+ G+ + ++L M +NG
Sbjct: 514 SKVGEIDEAIKLLSEMMENG 533
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 187 LKTIGTYNALLGAYMYNGL---------SDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
L+ + + +L AY YNGL + ++R + E PS+ TY++L+ G
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEG-FRPSLQTYSSLMVGLG 234
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ +D + +E++ L PNV+T+ I A + EI + M PD
Sbjct: 235 KRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVV 294
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVK 323
TY +L+ + L ++++E +K
Sbjct: 295 TYTVLIDALCTARKLDCAKEVFEKMK 320
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G T Y I + G+ + A + F + K + I NA L + G +
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREA 487
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +F LK + + P VTYN ++ + ++ +D E+ ++ P+V N LI
Sbjct: 488 KQIFYGLK-DIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLIN 546
Query: 270 GYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
T + +V+E ++M MK + P TY LL G +G + +++E
Sbjct: 547 ---TLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y +K ++ +D A L +E N + N+L+ D+ +F +K
Sbjct: 506 YNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK 565
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWM 276
E + P++VTYNTL++ G+ + F+ + PN T+N L +
Sbjct: 566 -EMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 624
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++ +++MM G V PD TY ++ G +G +
Sbjct: 625 TLALKMLFKMMDMGCV-PDVFTYNTIIFGLVKNGQV 659
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + TYN L+ + D LF +++ + P+ TY I +G+ D +
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNME-SLGVKPTAYTYIVFIDYYGKS--GDSVS 451
Query: 247 A--AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
A F+++K ++PN+ N + A + ++I+ +K ++PD+ TY ++++
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511
Query: 305 GYAHSGNLPRMEKI 318
Y+ G + K+
Sbjct: 512 CYSKVGEIDEAIKL 525
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ G+ ++ ++ ++++ A + P++ T+N LI + +H A +Q
Sbjct: 1034 TYNSLILNLGIAGMVEEAGKIYNEIQR-AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQT 1092
Query: 252 IKDSNLSPNVFTYNYL 267
+ SPN TY L
Sbjct: 1093 MVTGGFSPNTGTYEQL 1108
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
RI V+LA ++ E + + + T N ++ A +G +K + ++ E + P I
Sbjct: 212 RIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ-EKGVYPDI 270
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYNTLIS + L++ + SP V+TYN +I G + + +E++
Sbjct: 271 VTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 330
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M + PD+ TY LL G++ EK++ D + ++ ++C S S+
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS------DMRSRDVVPDLVCFSSMMSL 384
Query: 347 TDRIKKIE-ALMRLIPEKE 364
R ++ ALM KE
Sbjct: 385 FTRSGNLDKALMYFNSVKE 403
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E +K++K T+ N+++ Y +G + +S + E + P ++YNTLI F R
Sbjct: 575 EMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFV-PDCISYNTLIYGFVR- 632
Query: 240 LLVDHMEAAFQEIK-----DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
++M AF +K L P+VFTYN ++ G+ + E + + M V P
Sbjct: 633 --EENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNP 690
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIYE 320
D +TY ++ G+ NL +I++
Sbjct: 691 DRSTYTCMINGFVSQDNLTEAFRIHD 716
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 134/333 (40%), Gaps = 18/333 (5%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+++++ + +G DK F +K EA + P V Y LI + R ++ E+
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVK-EAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEM 436
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ +V TYN ++ G M G+ ++++ M + PD+ T +L+ G+ GNL
Sbjct: 437 LQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNL 496
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWL 369
++++ +K + ++ + K D K+I A M ++P P
Sbjct: 497 QNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPT----PIS 552
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+L+ + L E + + D K TV I ++ Y R +F+++
Sbjct: 553 YSILVNALCSKGHLAEAFR-VWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC--G 487
S G+ Y++ + + + + + ++K+ME + F + C
Sbjct: 612 ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQN 671
Query: 488 QRRKVNQVLGLMCKNG-------YDVPVNAFPS 513
Q ++ VL M + G Y +N F S
Sbjct: 672 QMKEAEVVLRKMIERGVNPDRSTYTCMINGFVS 704
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 18/226 (7%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
L + + SI N LI R+ V+ +QEI S + NV+T N ++
Sbjct: 190 LLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDG 249
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF-PLI 334
KV ++ V PD TY L+ Y+ G ME+ +EL+ + + GK F P +
Sbjct: 250 KMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG---LMEEAFELM-NAMPGKGFSPGV 305
Query: 335 ---RAMICAYSKCSVTDRIKKIEALM---RLIPEK-EYRPWLNVLLIRVYAKEDCLEEME 387
+I K +R K++ A M L P+ YR LL+ K D +E E
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS----LLMEACKKGDVVET-E 360
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
K +D + V + ++S + R +DK + + AG
Sbjct: 361 KVFSD-MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+++ + + D + +F DL SP +VT+NT+I V+ R VD +E
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMF-DLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLRE 457
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L N TYN LI G+ ++++Q M + V PDT T +LL G+ +
Sbjct: 458 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 517
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
L +++E++ K +D + +I +C SK
Sbjct: 518 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 552
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 104/255 (40%), Gaps = 19/255 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG-TP--MTKEEYTKGIKFA 166
G CL R S A M + G LE + + G TP +T G+
Sbjct: 185 GLCLEDRISEALALFGYMVETG-----FLEAVALFDQMVEIGLTPVVITFNTLINGLCLE 239
Query: 167 GRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ AA L + K L + TY ++ G + +L ++ E +I P
Sbjct: 240 GRVLE---AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME-ETHIKPD 295
Query: 226 IVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+V Y+ +I RL H A F E+ + ++PNVFTYN +I G+ + W +
Sbjct: 296 VVIYSAIID---RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ + M + PD T+ L+ G L EK+ + + H + +MI +
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412
Query: 343 KCSVTDRIKKIEALM 357
K + D K + LM
Sbjct: 413 KHNRFDDAKHMFDLM 427
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 5/204 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--KTI 190
R + E + R + G Y I ++N++ A DLF E + + TI
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 503
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T N LL + N ++ LF ++ + + I V YN +I + VD F
Sbjct: 504 -TCNILLYGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 561
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P+V TYN +I+G+ ++ MK PD +TY L+RG +G
Sbjct: 562 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAG 621
Query: 311 NLPR-MEKIYELVKHHVDGKEFPL 333
+ + +E I E+ + G F +
Sbjct: 622 EIDKSIELISEMRSNGFSGDAFTI 645
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL +R ++ M + G P L T KG AG+I
Sbjct: 204 GWCLIKRTPKALEVLKEMVERGINPNLT-----------------TYNTMLKGFFRAGQI 246
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ A + F E + + + TY ++ + G + +++F ++ +E + PS+ T
Sbjct: 247 RH---AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVAT 302
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN +I V + V++ F+E+ PNV TYN LI G A + + EE+ Q M+
Sbjct: 303 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRME 362
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ TY +++R Y+ + + ++E
Sbjct: 363 NEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + G F ++KK + +VTY T++ FG + F E
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKR-DCEIDVVTYTTVVHGFGVAGEIKRARNVFDE 290
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V TYN +I +++ M P+ TY +L+RG H+G
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
R E++ + +++ F MI YS+CS ++
Sbjct: 351 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEK 388
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + G + A ++F E + L ++ TYNA++ + +F ++
Sbjct: 268 YTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMV 327
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P++ TYN LI E Q +++ PN TYN +I Y
Sbjct: 328 RRG-YEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEV 386
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
K +++ M +G +P+ +TY +L+ G
Sbjct: 387 EKALGLFEKMGSGDCLPNLDTYNILISG 414
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ + Y G DK LF ++ E + ++NT++ V + V+ F+
Sbjct: 128 TFAIVAERYASAGKPDKAVKLFLNMH-EHGCFQDLASFNTILDVLCKSKRVEKAYELFRA 186
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ S + TYN ++ G+ K E+ + M + P+ TY +L+G+ +G
Sbjct: 187 LR-GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQ 245
Query: 312 L 312
+
Sbjct: 246 I 246
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/368 (21%), Positives = 155/368 (42%), Gaps = 21/368 (5%)
Query: 42 PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR--VRKDLTQTVSALRDELLANV--- 96
PN + D+ +F + +T P+ V +L +T+ R+ +L NV
Sbjct: 124 PNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMK 183
Query: 97 -----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
DL+K ++ DE + + + + + P+ A+E W + + +G
Sbjct: 184 VFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVE---WFEKMSSFG 240
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
I GR NVD+A L+ A + + T++ L+ Y +G D C
Sbjct: 241 CEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCL 300
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+++ ++K + P++V YN LI GR + ++++ + +PN TY L+
Sbjct: 301 NIYEEMKA-LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRA 359
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGK 329
Y A IY+ MK + Y LL A + + +I++ +K+
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDP 419
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEME 387
+ ++I Y+ CS R+ + EA + + E + P L VL +I+ Y K ++++
Sbjct: 420 DSWTFSSLITVYA-CS--GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVV 476
Query: 388 KSINDAFE 395
++ + E
Sbjct: 477 RTFDQVLE 484
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y ++ GR D A ++ E K L T+ YN LL N D+ +F+D+K
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMK 412
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P T+++LI+V+ V EAA +++++ P +F +I Y A
Sbjct: 413 NCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQV 472
Query: 278 GKVEEIYQMMKAGPVMPD 295
V + + + PD
Sbjct: 473 DDVVRTFDQVLELGITPD 490
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 134/331 (40%), Gaps = 19/331 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN ++ G + + LF ++K + P VTYN++I FG++ +D
Sbjct: 261 TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG-LVPDTVTYNSMIDGFGKVGRLDDTVCF 319
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRG 305
F+E+KD P+V TYN LI + +GK+ E Y+ MK + P+ +Y L+
Sbjct: 320 FEEMKDMCCEPDVITYNALINCFCK---FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE--K 363
+ G + + +K +VD + L+ S +I + RL E +
Sbjct: 377 FCKEGMMQ------QAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 430
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM---RCIVSSYFRCNAVD 420
W NV+ C E K + F + + + ++ + + +D
Sbjct: 431 VGVEW-NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 489
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ + + G + LY + + S ++E + V+ EM+ I + + +
Sbjct: 490 RALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLM 549
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
AY G + +L M + +V V F
Sbjct: 550 DAYFKSGNPTEGLHLLDEMKELDIEVTVVTF 580
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N LL + G +D + F+D+ A P++ TYN +I + V+ F+E+K
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIG-AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 289
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
L P+ TYN +I G+ ++ MK PD TY L+ + G LP
Sbjct: 290 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 349
Query: 314 RMEKIYELVKHH 325
+ Y +K +
Sbjct: 350 IGLEFYREMKGN 361
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 15/232 (6%)
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR-------------INNV 172
++ +L P+LA + W + G+ + I F R ++
Sbjct: 114 VLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKA 173
Query: 173 DLAA-DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D D+ N + G ++AL + G+ ++ F +K+ + P + N
Sbjct: 174 DCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKR-FRVFPKTRSCNG 232
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ F +L D ++ F+++ + P VFTYN +I +++ MK
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 292
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
++PDT TY ++ G+ G L +E +K + A+I + K
Sbjct: 293 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 344
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ AY +G + L ++K E +I ++VT+ LI + LV F I
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMK-ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRI 603
Query: 253 -KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
D L N + +I G +++ M ++PD Y L+ G GN
Sbjct: 604 SNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGN 663
Query: 312 L 312
+
Sbjct: 664 V 664
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L+ E + + +I TY++L+ + + D+ + +F + + P +VTYNTLI
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF-EFMVSKHCFPDVVTYNTLI 403
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + V+ F+E+ L N TYN LI G A +EI++ M + V
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ TY LL G +G L + ++E ++
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +EV ++ G +T +G+ AG + D+A ++F E + + I
Sbjct: 411 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG---DCDMAQEIFKEMVSDGVPPNIM 467
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL NG +K +F L++ + + P+I TYN +I + V+ F
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN 526
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V YN +I+G+ + + +++ MK +P++ Y L+R G+
Sbjct: 527 LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD 586
Query: 312 LPRMEKIYELVKH 324
E EL+K
Sbjct: 587 ---REASAELIKE 596
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 9/300 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G +D +L ++ + + P ++ YNT+I + +D F+E
Sbjct: 223 TYGVVVNGLCKRGDTDLAFNLLNKME-QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + PNV TY+ LI+ W + M + PD T+ L+ + G
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E+VK +D P I + + DR+ + + + + K P +
Sbjct: 342 LVEAEKLYDEMVKRSID----PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI+ + K +EE + + + TV ++ F+ D K
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV-TYNILIQGLFQAGDCDMAQEIFKE 456
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S G Y++ + ++E+ V + ++ K++ + T+ IM G+
Sbjct: 457 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 129/319 (40%), Gaps = 15/319 (4%)
Query: 203 NGLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258
NGLS D +LF ++ K PSI+ ++ L+S ++ D + + +++++ +
Sbjct: 55 NGLSELKLDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 113
Query: 259 PNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
N +TY+ LI + + + + + +MMK G P+ T LL GY HS R+ +
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLG-YEPNIVTLSSLLNGYCHS---KRISE 169
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLLI 374
LV P + ++ + AL+ + K +P L V++
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 229
Query: 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
+ + D ++ ++ + E V I I+ + +D N K E+ G
Sbjct: 230 GLCKRGD--TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
R Y S + + R + +L +M KI+ TF + A+ G+ + +
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 495 VLGLMCKNGYDVPVNAFPS 513
+ M K D + + S
Sbjct: 348 LYDEMVKRSIDPSIVTYSS 366
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 120/321 (37%), Gaps = 39/321 (12%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P+IVT ++L++ + + A ++ + PN T+N LI G + +
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGN-------LPRMEK--------IYELV------ 322
M A PD TY +++ G G+ L +ME+ IY +
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268
Query: 323 -KHHVDG------KEFPLIRAMICAYSK-----CSVTDRIKKIEALMRLIPEKEYRPWLN 370
KH D E IR + YS C+ R L+ + E++ P +
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNY-GRWSDASRLLSDMIERKINPDVF 327
Query: 371 VL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI + KE L E EK + D ++ ++ +++ + + +D+ +
Sbjct: 328 TFSALIDAFVKEGKLVEAEK-LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S Y++ + + +RVEE V +EM + + T+ I+ G
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 489 RRKVNQVLGLMCKNGYDVPVN 509
++ M +G VP N
Sbjct: 447 CDMAQEIFKEMVSDG--VPPN 465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,745,890
Number of Sequences: 539616
Number of extensions: 7308229
Number of successful extensions: 22798
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 19653
Number of HSP's gapped (non-prelim): 1974
length of query: 513
length of database: 191,569,459
effective HSP length: 122
effective length of query: 391
effective length of database: 125,736,307
effective search space: 49162896037
effective search space used: 49162896037
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)