Query 010313
Match_columns 513
No_of_seqs 525 out of 2831
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 04:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-33 8.5E-38 286.8 44.9 400 85-502 87-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.2E-33 2.1E-37 283.8 38.0 373 118-503 82-546 (597)
3 4g26_A Pentatricopeptide repea 100.0 1E-32 3.4E-37 271.4 25.6 204 137-344 9-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.1E-31 1.4E-35 259.9 24.3 180 173-353 7-197 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-25 6.3E-30 215.7 45.6 357 131-502 12-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 7.2E-24 2.5E-28 204.5 45.3 356 117-488 29-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4.2E-26 192.7 38.9 339 153-499 23-406 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2.2E-21 7.5E-26 190.9 37.8 318 174-502 10-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4E-26 196.2 36.2 358 131-503 19-479 (514)
10 2gw1_A Mitochondrial precursor 99.9 9.1E-20 3.1E-24 182.4 33.6 337 156-502 6-444 (514)
11 3fp2_A TPR repeat-containing p 99.9 4E-19 1.4E-23 178.9 38.1 360 131-503 38-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.4E-18 4.8E-23 165.0 39.0 324 155-484 2-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 9.4E-18 3.2E-22 159.3 38.9 303 189-503 2-336 (359)
14 3spa_A Mtrpol, DNA-directed RN 99.8 5E-21 1.7E-25 193.4 10.4 152 189-345 126-286 (1134)
15 3fp2_A TPR repeat-containing p 99.8 1.1E-17 3.8E-22 168.3 35.1 336 156-502 25-457 (537)
16 3spa_A Mtrpol, DNA-directed RN 99.8 6.4E-21 2.2E-25 192.7 9.1 160 225-392 126-306 (1134)
17 3hym_B Cell division cycle pro 99.8 2.3E-17 8E-22 154.7 33.0 295 152-489 18-321 (330)
18 1fch_A Peroxisomal targeting s 99.8 7.7E-18 2.6E-22 160.8 23.6 306 165-498 34-355 (368)
19 3hym_B Cell division cycle pro 99.8 5.7E-16 1.9E-20 145.2 33.7 258 128-395 32-298 (330)
20 1fch_A Peroxisomal targeting s 99.8 2.6E-17 8.8E-22 157.1 23.0 289 132-462 39-354 (368)
21 2xm6_A Protein corresponding t 99.8 7.2E-14 2.5E-18 138.7 47.0 339 131-504 56-434 (490)
22 4eqf_A PEX5-related protein; a 99.8 5.4E-17 1.8E-21 154.8 21.6 94 159-254 68-161 (365)
23 4eqf_A PEX5-related protein; a 99.8 8.9E-17 3E-21 153.3 22.9 266 189-463 64-352 (365)
24 3cv0_A Peroxisome targeting si 99.7 6.5E-16 2.2E-20 144.6 24.9 264 157-463 22-311 (327)
25 3cv0_A Peroxisome targeting si 99.7 8.1E-16 2.8E-20 144.0 25.3 266 189-499 20-312 (327)
26 1b89_A Protein (clathrin heavy 99.7 5.8E-18 2E-22 159.0 9.4 305 132-490 17-329 (449)
27 2xm6_A Protein corresponding t 99.7 3.5E-13 1.2E-17 133.7 44.5 320 155-503 38-397 (490)
28 2ooe_A Cleavage stimulation fa 99.7 2.8E-13 9.7E-18 135.8 44.3 217 279-501 256-491 (530)
29 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.5E-20 139.2 24.6 278 163-494 6-286 (291)
30 1b89_A Protein (clathrin heavy 99.7 3.9E-17 1.4E-21 153.3 12.9 327 118-496 30-366 (449)
31 2ooe_A Cleavage stimulation fa 99.7 1.5E-13 5.1E-18 137.9 39.0 373 119-503 12-455 (530)
32 3mkr_A Coatomer subunit epsilo 99.7 6.1E-15 2.1E-19 135.3 26.0 129 372-502 135-264 (291)
33 4g1t_A Interferon-induced prot 99.7 7.3E-14 2.5E-18 138.0 32.7 365 126-510 59-468 (472)
34 3uq3_A Heat shock protein STI1 99.6 9.4E-14 3.2E-18 125.0 26.3 224 226-500 5-234 (258)
35 2pl2_A Hypothetical conserved 99.6 9.8E-14 3.4E-18 121.5 22.5 196 153-354 2-208 (217)
36 1xi4_A Clathrin heavy chain; a 99.6 8.6E-12 2.9E-16 130.9 39.4 322 117-498 984-1305(1630)
37 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.6E-18 122.5 24.2 226 156-431 5-235 (258)
38 1xi4_A Clathrin heavy chain; a 99.6 1.7E-11 5.7E-16 128.8 39.0 349 90-497 1056-1440(1630)
39 4g1t_A Interferon-induced prot 99.6 8.2E-12 2.8E-16 123.2 34.4 361 89-468 57-460 (472)
40 2vq2_A PILW, putative fimbrial 99.6 2E-12 6.8E-17 113.6 26.8 200 155-357 7-208 (225)
41 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-12 4.8E-17 117.0 26.0 190 157-350 38-228 (252)
42 3u4t_A TPR repeat-containing p 99.6 1.7E-12 5.8E-17 117.9 26.8 195 156-354 3-202 (272)
43 2pl2_A Hypothetical conserved 99.6 2.8E-13 9.7E-18 118.6 20.3 210 259-500 3-212 (217)
44 2h6f_A Protein farnesyltransfe 99.6 4.2E-12 1.4E-16 120.5 28.6 185 156-345 97-288 (382)
45 2ho1_A Type 4 fimbrial biogene 99.5 3.9E-12 1.3E-16 114.0 25.9 201 261-501 37-237 (252)
46 3u4t_A TPR repeat-containing p 99.5 2E-12 7E-17 117.3 23.5 246 193-481 6-263 (272)
47 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-12 5.4E-17 115.8 22.3 201 154-359 21-221 (243)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-12 3.6E-17 119.4 21.0 249 201-496 16-269 (275)
49 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.5E-13 1.5E-17 121.8 18.2 244 168-426 17-269 (275)
50 2vq2_A PILW, putative fimbrial 99.5 7.8E-12 2.7E-16 109.7 25.1 202 260-465 7-209 (225)
51 1ouv_A Conserved hypothetical 99.5 5E-11 1.7E-15 108.3 31.2 228 155-433 5-252 (273)
52 2h6f_A Protein farnesyltransfe 99.5 5E-12 1.7E-16 119.9 24.8 254 189-483 96-363 (382)
53 4a1s_A PINS, partner of inscut 99.5 1.9E-12 6.4E-17 125.3 21.6 273 189-500 47-370 (411)
54 3ro2_A PINS homolog, G-protein 99.5 2.7E-12 9.4E-17 120.1 21.6 277 193-502 8-332 (338)
55 4a1s_A PINS, partner of inscut 99.5 1.5E-12 5.3E-17 125.9 20.1 275 157-467 49-372 (411)
56 3sf4_A G-protein-signaling mod 99.5 4.9E-12 1.7E-16 122.0 23.5 276 189-466 8-335 (406)
57 1ouv_A Conserved hypothetical 99.5 1.1E-10 3.8E-15 106.0 31.0 228 225-503 5-252 (273)
58 3sf4_A G-protein-signaling mod 99.5 5.4E-12 1.9E-16 121.6 23.4 302 153-454 6-363 (406)
59 2q7f_A YRRB protein; TPR, prot 99.5 2.8E-12 9.5E-17 114.2 19.2 200 189-395 22-221 (243)
60 3ro2_A PINS homolog, G-protein 99.5 5.9E-12 2E-16 117.8 21.9 279 158-467 7-332 (338)
61 3ulq_A Response regulator aspa 99.5 2E-11 7E-16 116.9 24.8 235 233-501 110-367 (383)
62 3nf1_A KLC 1, kinesin light ch 99.4 1.6E-12 5.3E-17 120.5 15.0 239 226-501 27-306 (311)
63 3vtx_A MAMA; tetratricopeptide 99.4 4.6E-11 1.6E-15 101.3 22.9 167 155-325 4-170 (184)
64 3e4b_A ALGK; tetratricopeptide 99.4 4.2E-11 1.4E-15 117.1 23.1 305 171-500 89-419 (452)
65 2ond_A Cleavage stimulation fa 99.4 1.1E-09 3.7E-14 101.3 30.8 177 173-355 33-227 (308)
66 4abn_A Tetratricopeptide repea 99.4 4.7E-11 1.6E-15 117.5 22.5 207 134-351 84-312 (474)
67 2ond_A Cleavage stimulation fa 99.4 9.4E-10 3.2E-14 101.8 28.9 236 189-467 7-270 (308)
68 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-11 7.6E-16 112.6 17.9 242 152-395 23-306 (311)
69 3e4b_A ALGK; tetratricopeptide 99.4 5.2E-11 1.8E-15 116.4 20.7 340 131-504 16-389 (452)
70 3ulq_A Response regulator aspa 99.3 1.4E-10 4.7E-15 111.1 22.6 233 163-430 110-366 (383)
71 4abn_A Tetratricopeptide repea 99.3 6E-11 2E-15 116.7 19.6 148 172-324 84-249 (474)
72 3as5_A MAMA; tetratricopeptide 99.3 2.7E-10 9.2E-15 96.3 20.4 166 156-325 8-173 (186)
73 3vtx_A MAMA; tetratricopeptide 99.3 3.3E-10 1.1E-14 96.0 20.7 166 295-466 4-169 (184)
74 3q15_A PSP28, response regulat 99.3 6.9E-10 2.3E-14 106.0 25.3 315 152-501 6-364 (378)
75 1hz4_A MALT regulatory protein 99.3 3.2E-09 1.1E-13 101.0 29.1 303 191-503 15-350 (373)
76 4e6h_A MRNA 3'-END-processing 99.3 6.1E-08 2.1E-12 98.2 38.9 376 119-503 65-571 (679)
77 4gyw_A UDP-N-acetylglucosamine 99.3 2.4E-10 8.2E-15 117.1 20.9 167 153-324 6-173 (723)
78 1hz4_A MALT regulatory protein 99.3 1.4E-08 5E-13 96.5 31.7 302 159-468 17-350 (373)
79 3q15_A PSP28, response regulat 99.2 2E-09 6.7E-14 102.8 23.6 196 163-359 108-328 (378)
80 3edt_B KLC 2, kinesin light ch 99.2 9.7E-10 3.3E-14 99.8 18.4 230 272-502 12-281 (283)
81 3as5_A MAMA; tetratricopeptide 99.2 2.4E-09 8.3E-14 90.3 19.4 164 190-358 8-171 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 2E-09 6.8E-14 110.3 21.9 165 189-359 8-173 (723)
83 3edt_B KLC 2, kinesin light ch 99.2 1.5E-09 5.2E-14 98.6 18.5 229 237-466 12-280 (283)
84 4i17_A Hypothetical protein; T 99.2 9.4E-09 3.2E-13 90.3 22.9 198 154-364 5-213 (228)
85 4e6h_A MRNA 3'-END-processing 99.1 4.3E-07 1.5E-11 92.1 36.5 348 152-503 62-534 (679)
86 4i17_A Hypothetical protein; T 99.1 5.1E-08 1.8E-12 85.5 25.2 213 224-479 5-220 (228)
87 2fo7_A Synthetic consensus TPR 99.1 6.9E-09 2.3E-13 82.3 17.5 129 158-289 3-131 (136)
88 1qqe_A Vesicular transport pro 99.1 2.4E-08 8.2E-13 91.4 22.1 96 207-324 2-105 (292)
89 2fo7_A Synthetic consensus TPR 99.0 2.8E-08 9.7E-13 78.6 17.9 131 191-325 2-132 (136)
90 3qky_A Outer membrane assembly 99.0 4.5E-08 1.5E-12 87.9 20.3 171 154-325 13-224 (261)
91 1qqe_A Vesicular transport pro 99.0 4.4E-08 1.5E-12 89.6 19.5 162 163-324 44-227 (292)
92 3urz_A Uncharacterized protein 99.0 6.3E-08 2.2E-12 83.6 19.3 172 157-335 5-194 (208)
93 2r5s_A Uncharacterized protein 99.0 1.6E-08 5.3E-13 84.9 14.3 163 158-324 8-172 (176)
94 2pzi_A Probable serine/threoni 98.9 2.6E-08 8.9E-13 102.5 18.8 189 167-361 402-603 (681)
95 3mv2_B Coatomer subunit epsilo 98.9 2.1E-07 7.3E-12 83.8 21.8 144 175-323 85-238 (310)
96 3qou_A Protein YBBN; thioredox 98.9 6.6E-08 2.3E-12 88.1 18.9 167 153-323 114-282 (287)
97 3mv2_B Coatomer subunit epsilo 98.9 2.8E-07 9.4E-12 83.1 21.0 195 118-326 69-283 (310)
98 3dra_A Protein farnesyltransfe 98.9 2.4E-06 8.2E-11 77.7 27.0 135 133-274 48-193 (306)
99 3dra_A Protein farnesyltransfe 98.9 2.9E-06 1E-10 77.1 27.2 152 170-324 124-286 (306)
100 4ga2_A E3 SUMO-protein ligase 98.9 2.7E-08 9.2E-13 80.9 12.4 145 162-311 3-149 (150)
101 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.7E-07 5.9E-12 82.0 18.5 191 155-365 3-218 (225)
102 3qky_A Outer membrane assembly 98.9 3.2E-07 1.1E-11 82.3 20.5 189 224-433 13-225 (261)
103 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.8E-12 97.8 18.5 175 131-311 404-583 (681)
104 2ifu_A Gamma-SNAP; membrane fu 98.8 4.1E-07 1.4E-11 83.8 20.5 205 203-465 4-222 (307)
105 2vsy_A XCC0866; transferase, g 98.8 1.9E-07 6.6E-12 94.1 19.0 152 170-325 3-157 (568)
106 3q7a_A Farnesyltransferase alp 98.8 1.7E-05 5.9E-10 72.9 28.5 168 173-345 71-256 (349)
107 2ifu_A Gamma-SNAP; membrane fu 98.8 8E-07 2.7E-11 81.8 19.8 165 158-323 38-222 (307)
108 3urz_A Uncharacterized protein 98.7 7.2E-07 2.5E-11 76.9 18.3 163 131-303 17-197 (208)
109 2uy1_A Cleavage stimulation fa 98.7 1.4E-05 4.7E-10 78.5 29.6 361 119-501 14-412 (493)
110 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.5E-06 5E-11 76.0 20.5 190 189-398 3-215 (225)
111 3u3w_A Transcriptional activat 98.7 6E-06 2.1E-10 75.3 25.3 199 116-324 42-265 (293)
112 3rjv_A Putative SEL1 repeat pr 98.7 1.2E-06 4.2E-11 75.7 19.4 176 137-327 5-199 (212)
113 2qfc_A PLCR protein; TPR, HTH, 98.7 1.3E-06 4.5E-11 79.8 20.2 200 117-323 43-264 (293)
114 2vsy_A XCC0866; transferase, g 98.7 5.9E-07 2E-11 90.6 18.5 153 132-291 3-158 (568)
115 4ga2_A E3 SUMO-protein ligase 98.7 6.1E-08 2.1E-12 78.8 9.2 113 372-488 36-149 (150)
116 1a17_A Serine/threonine protei 98.7 1.2E-06 4E-11 72.2 17.1 127 158-287 15-143 (166)
117 3qou_A Protein YBBN; thioredox 98.7 1.2E-06 4.1E-11 79.7 18.5 161 189-354 116-278 (287)
118 3u3w_A Transcriptional activat 98.7 6.9E-06 2.3E-10 75.0 23.6 128 373-500 121-264 (293)
119 2r5s_A Uncharacterized protein 98.7 5.4E-07 1.9E-11 75.4 14.2 159 191-355 7-168 (176)
120 1na0_A Designed protein CTPR3; 98.6 1.9E-06 6.6E-11 66.7 16.3 98 156-255 9-106 (125)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.5E-06 1.5E-10 72.0 19.2 129 192-326 8-151 (213)
122 2e2e_A Formate-dependent nitri 98.6 4.2E-07 1.4E-11 76.1 12.0 122 166-290 20-144 (177)
123 3gw4_A Uncharacterized protein 98.6 5.7E-07 1.9E-11 77.0 12.9 158 167-324 3-175 (203)
124 2vyi_A SGTA protein; chaperone 98.6 2.4E-06 8.3E-11 66.8 15.3 117 157-276 13-129 (131)
125 4gco_A Protein STI-1; structur 98.6 2.8E-06 9.7E-11 66.4 15.3 96 158-255 15-110 (126)
126 2uy1_A Cleavage stimulation fa 98.6 3.4E-05 1.2E-09 75.7 25.9 328 156-499 15-380 (493)
127 3rjv_A Putative SEL1 repeat pr 98.5 3.7E-06 1.3E-10 72.6 16.6 181 244-468 4-198 (212)
128 2lni_A Stress-induced-phosphop 98.5 1.8E-06 6.3E-11 67.9 13.5 99 154-254 14-112 (133)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.5 9.4E-06 3.2E-10 69.9 18.7 129 158-291 8-151 (213)
130 1a17_A Serine/threonine protei 98.5 6E-06 2E-10 67.8 16.7 131 190-324 13-145 (166)
131 2qfc_A PLCR protein; TPR, HTH, 98.5 3.7E-05 1.3E-09 70.1 23.4 160 189-350 74-255 (293)
132 1na0_A Designed protein CTPR3; 98.5 7.2E-06 2.5E-10 63.4 16.2 97 190-289 9-105 (125)
133 3gyz_A Chaperone protein IPGC; 98.5 2.8E-06 9.6E-11 68.7 13.9 101 400-502 33-133 (151)
134 3q7a_A Farnesyltransferase alp 98.5 0.00018 6.1E-09 66.2 27.1 148 194-346 58-216 (349)
135 3gw4_A Uncharacterized protein 98.5 3.6E-06 1.2E-10 71.9 15.1 158 307-465 3-174 (203)
136 4f3v_A ESX-1 secretion system 98.5 2.5E-06 8.7E-11 75.8 13.6 188 131-326 19-238 (282)
137 2c2l_A CHIP, carboxy terminus 98.5 1.9E-06 6.5E-11 78.1 13.0 194 226-431 4-198 (281)
138 4gco_A Protein STI-1; structur 98.4 6.1E-06 2.1E-10 64.5 14.2 98 189-289 12-109 (126)
139 1p5q_A FKBP52, FK506-binding p 98.4 3.2E-07 1.1E-11 85.6 7.8 150 168-323 125-292 (336)
140 1p5q_A FKBP52, FK506-binding p 98.4 5.9E-06 2E-10 77.0 16.3 131 155-288 146-292 (336)
141 2vyi_A SGTA protein; chaperone 98.4 9.7E-06 3.3E-10 63.2 15.3 120 189-312 11-130 (131)
142 4f3v_A ESX-1 secretion system 98.4 7.2E-06 2.5E-10 72.8 15.7 127 372-502 107-237 (282)
143 3gyz_A Chaperone protein IPGC; 98.4 3.6E-06 1.2E-10 68.0 12.6 95 158-254 38-132 (151)
144 2vgx_A Chaperone SYCD; alterna 98.4 1.5E-06 5.1E-11 70.3 10.3 97 189-288 20-116 (148)
145 2vgx_A Chaperone SYCD; alterna 98.4 2.2E-06 7.7E-11 69.2 11.1 93 372-467 26-118 (148)
146 2c2l_A CHIP, carboxy terminus 98.4 1.8E-06 6.2E-11 78.3 11.4 94 260-356 3-97 (281)
147 2e2e_A Formate-dependent nitri 98.4 1.9E-06 6.5E-11 72.0 10.3 120 379-502 22-144 (177)
148 2lni_A Stress-induced-phosphop 98.4 1.2E-05 4E-10 63.1 14.2 98 189-289 15-112 (133)
149 1elw_A TPR1-domain of HOP; HOP 98.4 2.5E-05 8.7E-10 59.5 15.6 95 158-254 6-100 (118)
150 2fbn_A 70 kDa peptidylprolyl i 98.4 9.7E-07 3.3E-11 75.4 8.0 151 162-315 10-175 (198)
151 3dss_A Geranylgeranyl transfer 98.3 0.00086 2.9E-08 61.3 27.7 164 174-342 48-238 (331)
152 3upv_A Heat shock protein STI1 98.3 1.4E-05 4.8E-10 62.3 13.9 96 157-254 5-100 (126)
153 2kck_A TPR repeat; tetratricop 98.3 7.9E-06 2.7E-10 61.8 12.2 98 156-255 6-106 (112)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 1.7E-05 5.7E-10 67.6 14.6 131 157-290 39-186 (198)
155 3upv_A Heat shock protein STI1 98.3 3.2E-05 1.1E-09 60.1 15.1 97 190-289 4-100 (126)
156 3q49_B STIP1 homology and U bo 98.3 5.6E-05 1.9E-09 59.6 16.5 99 154-254 7-105 (137)
157 1elr_A TPR2A-domain of HOP; HO 98.3 1.2E-05 4.1E-10 62.7 12.3 97 158-254 6-107 (131)
158 2kck_A TPR repeat; tetratricop 98.3 1.4E-05 4.8E-10 60.3 12.1 98 404-503 7-107 (112)
159 2xcb_A PCRH, regulatory protei 98.3 1.7E-05 5.7E-10 63.4 13.0 93 372-467 23-115 (142)
160 4gcn_A Protein STI-1; structur 98.2 2E-05 6.7E-10 61.6 12.8 97 158-254 10-111 (127)
161 2xcb_A PCRH, regulatory protei 98.2 2E-05 6.7E-10 63.0 13.0 93 160-254 22-114 (142)
162 3sz7_A HSC70 cochaperone (SGT) 98.2 3.1E-05 1.1E-09 63.5 14.3 99 155-255 10-108 (164)
163 4b4t_Q 26S proteasome regulato 98.2 0.00063 2.2E-08 65.5 25.5 189 165-353 13-238 (434)
164 1elw_A TPR1-domain of HOP; HOP 98.2 0.00012 4.1E-09 55.6 16.5 98 190-290 4-101 (118)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 2.9E-05 1E-09 63.7 13.7 94 372-468 16-109 (164)
166 4gcn_A Protein STI-1; structur 98.2 3.7E-05 1.3E-09 60.0 13.6 98 190-289 8-111 (127)
167 1elr_A TPR2A-domain of HOP; HO 98.2 2.3E-05 7.8E-10 61.1 12.1 109 190-302 4-118 (131)
168 2dba_A Smooth muscle cell asso 98.2 7E-05 2.4E-09 59.9 15.1 100 154-255 26-128 (148)
169 3q49_B STIP1 homology and U bo 98.2 4.9E-05 1.7E-09 59.9 13.8 93 372-467 14-106 (137)
170 4b4t_Q 26S proteasome regulato 98.2 0.00017 5.9E-09 69.6 20.1 197 269-465 12-243 (434)
171 1hxi_A PEX5, peroxisome target 98.1 3.4E-05 1.2E-09 59.7 11.5 91 162-254 23-113 (121)
172 3ro3_A PINS homolog, G-protein 98.1 3.5E-05 1.2E-09 62.6 12.0 96 158-253 11-116 (164)
173 3dss_A Geranylgeranyl transfer 98.1 0.0035 1.2E-07 57.3 25.8 185 133-325 45-267 (331)
174 1hxi_A PEX5, peroxisome target 98.1 6.9E-05 2.3E-09 57.9 12.5 95 192-289 19-113 (121)
175 3ro3_A PINS homolog, G-protein 98.1 4.5E-05 1.5E-09 61.9 12.0 135 190-324 9-157 (164)
176 2dba_A Smooth muscle cell asso 98.1 0.00023 7.9E-09 56.7 15.9 97 189-289 27-127 (148)
177 2xev_A YBGF; tetratricopeptide 98.0 0.00025 8.7E-09 55.0 15.5 91 162-255 8-105 (129)
178 1wao_1 Serine/threonine protei 98.0 2.4E-05 8.1E-10 76.6 11.1 121 162-285 12-134 (477)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 9.4E-05 3.2E-09 72.0 15.3 143 169-316 247-405 (457)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 1E-05 3.5E-10 78.9 7.6 119 228-348 270-402 (457)
181 1wao_1 Serine/threonine protei 98.0 2.3E-05 8E-10 76.7 9.7 121 374-498 13-135 (477)
182 3n71_A Histone lysine methyltr 98.0 7.4E-05 2.5E-09 72.7 13.1 128 375-502 317-464 (490)
183 1dce_A Protein (RAB geranylger 98.0 0.00093 3.2E-08 66.6 21.2 172 171-347 44-242 (567)
184 2xev_A YBGF; tetratricopeptide 97.9 0.00022 7.5E-09 55.4 13.1 92 194-289 6-104 (129)
185 1ihg_A Cyclophilin 40; ppiase 97.9 0.00019 6.6E-09 67.6 14.1 121 158-281 225-361 (370)
186 3k9i_A BH0479 protein; putativ 97.8 4.3E-05 1.5E-09 58.6 7.3 89 379-468 2-91 (117)
187 3rkv_A Putative peptidylprolyl 97.8 0.00035 1.2E-08 57.0 13.1 98 156-255 11-126 (162)
188 3rkv_A Putative peptidylprolyl 97.8 0.00041 1.4E-08 56.5 12.8 100 189-289 10-125 (162)
189 1klx_A Cysteine rich protein B 97.7 0.00045 1.5E-08 54.6 12.0 114 380-505 8-129 (138)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00018 6.1E-09 66.9 10.8 146 157-324 180-327 (338)
191 1dce_A Protein (RAB geranylger 97.7 0.002 6.9E-08 64.2 19.0 175 131-314 42-244 (567)
192 3k9i_A BH0479 protein; putativ 97.7 8E-05 2.7E-09 57.0 7.0 85 169-255 3-90 (117)
193 2hr2_A Hypothetical protein; a 97.7 0.0016 5.6E-08 52.0 14.6 94 192-288 13-129 (159)
194 2hr2_A Hypothetical protein; a 97.7 0.00069 2.3E-08 54.2 12.1 96 406-501 14-130 (159)
195 1ihg_A Cyclophilin 40; ppiase 97.7 0.00048 1.6E-08 64.8 13.2 120 373-494 229-362 (370)
196 2l6j_A TPR repeat-containing p 97.7 4.8E-05 1.6E-09 57.4 5.2 90 156-248 4-100 (111)
197 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00024 8.1E-09 66.1 10.3 144 189-354 178-322 (338)
198 3ma5_A Tetratricopeptide repea 97.6 0.00038 1.3E-08 51.4 8.7 65 154-218 5-69 (100)
199 1klx_A Cysteine rich protein B 97.6 0.0012 4E-08 52.2 11.9 110 171-291 10-127 (138)
200 2kat_A Uncharacterized protein 97.5 0.001 3.5E-08 50.4 11.1 78 175-254 4-81 (115)
201 3n71_A Histone lysine methyltr 97.5 0.0012 4E-08 64.3 13.5 95 372-466 356-463 (490)
202 1na3_A Designed protein CTPR2; 97.5 0.0016 5.6E-08 46.5 11.1 62 157-218 10-71 (91)
203 2kat_A Uncharacterized protein 97.4 0.0012 4.2E-08 49.9 10.0 79 137-219 4-82 (115)
204 2l6j_A TPR repeat-containing p 97.4 0.00091 3.1E-08 50.1 9.0 60 192-253 6-65 (111)
205 1na3_A Designed protein CTPR2; 97.3 0.0031 1.1E-07 45.0 10.9 82 403-486 9-90 (91)
206 1zu2_A Mitochondrial import re 97.3 0.00073 2.5E-08 54.0 7.7 85 167-254 13-119 (158)
207 3ly7_A Transcriptional activat 97.2 0.013 4.4E-07 53.9 16.2 50 152-201 190-244 (372)
208 1zu2_A Mitochondrial import re 97.2 0.0017 5.7E-08 51.9 8.5 99 201-304 13-132 (158)
209 3ma5_A Tetratricopeptide repea 97.1 0.003 1E-07 46.4 8.7 67 400-467 4-70 (100)
210 3qww_A SET and MYND domain-con 96.9 0.0057 1.9E-07 58.5 10.6 88 379-466 310-410 (433)
211 3mkq_A Coatomer beta'-subunit; 96.8 0.043 1.5E-06 57.5 18.3 46 237-288 663-708 (814)
212 3qwp_A SET and MYND domain-con 96.7 0.0091 3.1E-07 57.1 11.1 93 374-466 294-399 (429)
213 3mkq_A Coatomer beta'-subunit; 96.7 0.074 2.5E-06 55.7 19.0 120 198-351 607-727 (814)
214 3qww_A SET and MYND domain-con 96.7 0.0076 2.6E-07 57.6 10.0 87 415-501 310-410 (433)
215 3qwp_A SET and MYND domain-con 96.5 0.013 4.3E-07 56.1 10.4 91 410-500 294-398 (429)
216 3ly7_A Transcriptional activat 96.5 0.19 6.7E-06 46.1 17.3 141 188-335 192-347 (372)
217 1wy6_A Hypothetical protein ST 96.4 0.19 6.6E-06 38.2 13.9 60 373-434 97-156 (172)
218 3bee_A Putative YFRE protein; 96.3 0.068 2.3E-06 38.4 10.8 67 153-219 3-72 (93)
219 2kc7_A BFR218_protein; tetratr 96.2 0.05 1.7E-06 39.3 10.2 58 162-219 6-64 (99)
220 1wy6_A Hypothetical protein ST 96.2 0.24 8.2E-06 37.7 13.3 121 380-505 20-157 (172)
221 2kc7_A BFR218_protein; tetratr 96.1 0.014 4.9E-07 42.3 6.8 59 373-433 6-65 (99)
222 3bee_A Putative YFRE protein; 95.9 0.058 2E-06 38.7 9.0 68 400-468 3-73 (93)
223 3mkq_B Coatomer subunit alpha; 95.9 0.53 1.8E-05 38.1 16.6 102 164-286 13-114 (177)
224 3u64_A Protein TP_0956; tetrat 95.7 0.13 4.6E-06 45.2 11.9 110 382-499 178-295 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.6 0.087 3E-06 38.7 9.3 64 155-218 4-74 (104)
226 3mkq_B Coatomer subunit alpha; 95.5 0.78 2.7E-05 37.1 16.7 44 273-322 17-60 (177)
227 1pc2_A Mitochondria fission pr 95.4 0.11 3.8E-06 40.9 9.4 79 174-254 16-99 (152)
228 1pc2_A Mitochondria fission pr 95.3 0.12 4E-06 40.8 9.1 85 381-468 12-101 (152)
229 4h7y_A Dual specificity protei 95.3 0.15 5.2E-06 39.6 9.4 51 452-503 74-124 (161)
230 3u64_A Protein TP_0956; tetrat 95.3 0.23 7.9E-06 43.7 11.7 94 171-267 178-283 (301)
231 2v5f_A Prolyl 4-hydroxylase su 94.8 0.18 6E-06 37.0 8.5 26 298-323 48-73 (104)
232 4b4t_P 26S proteasome regulato 94.5 3.5 0.00012 39.4 19.0 55 170-224 30-90 (445)
233 4ady_A RPN2, 26S proteasome re 94.3 2.2 7.4E-05 44.5 17.8 260 236-500 384-656 (963)
234 4ady_A RPN2, 26S proteasome re 94.3 3 0.0001 43.5 18.8 258 199-466 383-657 (963)
235 4h7y_A Dual specificity protei 92.8 1.9 6.6E-05 33.6 11.0 104 154-259 11-127 (161)
236 1nzn_A CGI-135 protein, fissio 92.8 1.5 5E-05 33.2 10.2 94 373-468 7-104 (126)
237 3lvg_A Clathrin heavy chain 1; 92.5 1.8E-05 6.2E-10 74.0 -20.3 265 155-459 53-325 (624)
238 2ff4_A Probable regulatory pro 92.3 0.58 2E-05 43.9 9.5 72 192-265 173-249 (388)
239 1nzn_A CGI-135 protein, fissio 92.3 2.8 9.7E-05 31.6 11.3 85 312-398 17-105 (126)
240 4fhn_B Nucleoporin NUP120; pro 92.1 2.6 8.9E-05 45.8 15.5 125 264-390 902-1043(1139)
241 4fhn_B Nucleoporin NUP120; pro 91.7 4.5 0.00016 44.0 16.7 130 370-501 902-1049(1139)
242 2ff4_A Probable regulatory pro 90.9 0.9 3.1E-05 42.6 9.0 68 406-474 174-246 (388)
243 1v54_E Cytochrome C oxidase po 90.8 3.1 0.00011 29.7 9.3 62 137-198 26-87 (109)
244 4gns_B Protein CSD3, chitin bi 90.8 2.6 9E-05 42.9 12.7 54 445-499 344-397 (754)
245 3txn_A 26S proteasome regulato 89.5 13 0.00046 34.5 16.5 93 372-464 104-207 (394)
246 4gns_B Protein CSD3, chitin bi 89.1 2 6.7E-05 43.8 10.3 60 437-498 612-680 (754)
247 1v54_E Cytochrome C oxidase po 88.6 3.2 0.00011 29.7 7.9 62 277-339 26-87 (109)
248 1qsa_A Protein (soluble lytic 88.0 23 0.00078 35.3 24.9 116 382-500 229-346 (618)
249 2y69_E Cytochrome C oxidase su 88.0 5.3 0.00018 30.3 9.2 62 137-198 69-130 (152)
250 3ffl_A Anaphase-promoting comp 84.8 4.1 0.00014 32.4 7.7 114 161-287 25-148 (167)
251 3lvg_A Clathrin heavy chain 1; 83.7 0.015 5E-07 54.9 -7.7 185 155-355 82-286 (624)
252 2y69_E Cytochrome C oxidase su 83.6 11 0.00038 28.6 9.1 61 278-339 70-130 (152)
253 3o48_A Mitochondria fission 1 81.4 16 0.00053 27.8 9.5 60 408-467 45-107 (134)
254 4b4t_P 26S proteasome regulato 81.3 38 0.0013 32.2 24.9 95 372-466 142-246 (445)
255 4b4t_R RPN7, 26S proteasome re 80.5 39 0.0013 31.9 14.6 95 372-466 136-236 (429)
256 3esl_A Checkpoint serine/threo 80.4 13 0.00044 30.6 9.3 53 419-471 95-148 (202)
257 3o48_A Mitochondria fission 1 80.2 17 0.00059 27.6 9.5 69 327-396 36-107 (134)
258 3ffl_A Anaphase-promoting comp 79.0 19 0.00064 28.6 9.5 26 474-499 123-148 (167)
259 2p58_C Putative type III secre 77.5 17 0.00057 25.9 8.4 79 204-291 21-99 (116)
260 2uwj_G Type III export protein 77.3 16 0.00056 26.0 7.6 79 204-291 20-98 (115)
261 1zbp_A Hypothetical protein VP 77.3 9.9 0.00034 33.0 8.1 116 375-502 5-129 (273)
262 3lpz_A GET4 (YOR164C homolog); 75.8 45 0.0015 30.0 22.7 81 294-394 134-214 (336)
263 3esl_A Checkpoint serine/threo 74.9 34 0.0011 28.2 10.3 59 380-438 92-150 (202)
264 2wpv_A GET4, UPF0363 protein Y 74.8 46 0.0016 29.7 22.4 187 172-394 13-215 (312)
265 3eiq_C Programmed cell death p 73.7 30 0.001 31.6 10.9 63 372-436 222-286 (358)
266 4b4t_R RPN7, 26S proteasome re 72.8 32 0.0011 32.5 11.4 96 192-289 133-236 (429)
267 3txn_A 26S proteasome regulato 71.3 65 0.0022 29.9 20.4 134 190-324 19-167 (394)
268 4a1g_A Mitotic checkpoint seri 70.8 22 0.00075 27.8 8.0 51 386-436 84-134 (152)
269 1wdy_A 2-5A-dependent ribonucl 70.2 7.2 0.00025 34.0 6.1 88 414-509 190-282 (285)
270 3eiq_C Programmed cell death p 68.2 33 0.0011 31.3 9.8 77 406-483 220-298 (358)
271 1y8m_A FIS1; mitochondria, unk 68.1 39 0.0013 26.0 10.7 68 328-396 36-106 (144)
272 2wvi_A Mitotic checkpoint seri 66.0 17 0.00057 28.9 6.5 51 422-472 79-130 (164)
273 1k1a_A B-cell lymphoma 3-encod 63.7 48 0.0017 27.6 10.0 27 268-294 13-39 (241)
274 4a1g_A Mitotic checkpoint seri 63.4 22 0.00074 27.8 6.6 50 422-471 84-134 (152)
275 2p58_C Putative type III secre 63.2 38 0.0013 24.2 7.6 85 382-476 22-106 (116)
276 2uwj_G Type III export protein 62.5 38 0.0013 24.2 6.8 85 382-476 21-105 (115)
277 1wdy_A 2-5A-dependent ribonucl 61.6 33 0.0011 29.6 8.7 91 411-509 153-249 (285)
278 4aez_C MAD3, mitotic spindle c 60.5 29 0.00099 29.1 7.2 50 422-471 133-183 (223)
279 1n11_A Ankyrin; clathrin, BAND 60.5 42 0.0014 31.5 9.7 9 378-386 286-294 (437)
280 2wvi_A Mitotic checkpoint seri 59.0 34 0.0012 27.1 7.1 56 384-439 77-132 (164)
281 1n11_A Ankyrin; clathrin, BAND 57.0 38 0.0013 31.7 8.8 311 161-510 49-374 (437)
282 2d2s_A Exocyst complex compone 54.5 99 0.0034 26.2 10.7 28 259-286 89-116 (235)
283 1zbp_A Hypothetical protein VP 53.2 1.1E+02 0.0039 26.4 15.1 54 165-218 6-59 (273)
284 3kea_A K1L; tropism, ANK repea 51.9 43 0.0015 29.2 7.7 213 239-475 9-225 (285)
285 4aez_C MAD3, mitotic spindle c 51.6 20 0.00068 30.1 4.8 55 383-437 130-184 (223)
286 3ltm_A Alpha-REP4; protein eng 51.0 99 0.0034 25.1 19.2 153 155-324 32-184 (211)
287 3lpz_A GET4 (YOR164C homolog); 50.5 1.4E+02 0.0049 26.8 22.3 135 158-311 37-182 (336)
288 2wpv_A GET4, UPF0363 protein Y 50.2 1.4E+02 0.0047 26.6 22.1 77 369-465 136-215 (312)
289 3kea_A K1L; tropism, ANK repea 48.7 20 0.00069 31.4 4.9 227 203-463 9-243 (285)
290 3d5l_A Regulatory protein RECX 48.3 1E+02 0.0035 25.8 8.9 31 313-343 93-123 (221)
291 3e3v_A Regulatory protein RECX 47.7 1.1E+02 0.0037 24.6 10.0 31 314-344 51-81 (177)
292 4ets_A Ferric uptake regulatio 46.1 56 0.0019 25.8 6.6 43 268-310 39-83 (162)
293 2fu4_A Ferric uptake regulatio 44.7 68 0.0023 21.5 6.5 30 279-308 35-64 (83)
294 2fe3_A Peroxide operon regulat 43.4 1.1E+02 0.0037 23.4 7.9 62 285-347 11-72 (145)
295 3eu9_A Huntingtin-interacting 43.3 20 0.00068 30.0 3.9 14 414-427 218-231 (240)
296 2f6m_A Suppressor protein STP2 42.8 37 0.0013 21.9 4.0 47 158-204 4-50 (65)
297 2xig_A Ferric uptake regulatio 42.7 99 0.0034 23.9 7.5 61 286-347 17-77 (150)
298 2rfa_A Transient receptor pote 42.3 31 0.0011 28.7 5.0 19 163-181 41-59 (232)
299 2f6m_A Suppressor protein STP2 42.2 38 0.0013 21.9 3.9 44 441-485 5-48 (65)
300 2fe3_A Peroxide operon regulat 41.6 99 0.0034 23.7 7.3 62 250-312 11-72 (145)
301 1k1a_A B-cell lymphoma 3-encod 41.0 86 0.0029 26.0 7.7 47 232-278 12-60 (241)
302 3b7b_A Euchromatic histone-lys 40.6 50 0.0017 27.5 6.1 53 445-501 181-235 (237)
303 2ion_A PDCD4, programmed cell 40.1 1.3E+02 0.0044 23.4 8.3 60 159-218 12-73 (152)
304 2ion_A PDCD4, programmed cell 39.9 1.3E+02 0.0045 23.3 9.0 62 372-435 14-77 (152)
305 3lxu_X Tripeptidyl-peptidase 2 39.3 4.2E+02 0.014 29.2 13.5 164 163-330 1115-1350(1354)
306 3pvs_A Replication-associated 39.2 2.5E+02 0.0086 26.4 12.1 38 273-310 267-304 (447)
307 3ljn_A Hypothetical protein; a 38.8 78 0.0027 28.6 7.5 96 155-257 17-112 (364)
308 2zu6_B Programmed cell death p 38.0 2.1E+02 0.0073 25.3 11.7 237 265-506 7-278 (307)
309 2r9g_A AAA ATPase, central reg 37.8 1.7E+02 0.0057 24.0 9.1 34 239-273 27-60 (204)
310 3jxi_A Vanilloid receptor-rela 37.4 57 0.002 27.7 6.0 19 447-465 231-249 (260)
311 1ug3_A EIF4GI, eukaryotic prot 37.2 79 0.0027 28.6 7.0 65 192-258 13-78 (339)
312 2nsz_A Programmed cell death p 37.0 1.3E+02 0.0045 22.5 10.2 61 372-434 12-74 (129)
313 2d2s_A Exocyst complex compone 36.9 1.9E+02 0.0065 24.4 8.8 22 441-462 94-115 (235)
314 4g8k_A 2-5A-dependent ribonucl 36.2 73 0.0025 28.4 6.8 20 162-181 28-47 (337)
315 3hra_A Ankyrin repeat family p 36.2 60 0.0021 26.1 5.7 15 271-285 12-26 (201)
316 2etb_A Transient receptor pote 36.0 97 0.0033 26.1 7.3 22 198-219 7-28 (256)
317 3bu8_A Telomeric repeat-bindin 35.9 1.8E+02 0.0063 24.1 7.9 14 383-396 88-101 (235)
318 4gq2_M Nucleoporin NUP120; bet 35.8 1.7E+02 0.0057 31.0 10.1 48 263-310 899-950 (950)
319 1s6c_A KV4 potassium channel-i 35.6 1.5E+02 0.005 23.3 7.9 8 280-287 142-149 (183)
320 3d9h_A CDNA FLJ77766, highly s 35.3 57 0.002 28.4 5.7 225 265-510 16-252 (285)
321 3b7b_A Euchromatic histone-lys 35.2 24 0.00082 29.6 3.1 17 414-430 218-234 (237)
322 3bge_A Predicted ATPase; struc 34.9 1.9E+02 0.0063 23.7 8.0 37 238-274 19-55 (201)
323 3ljn_A Hypothetical protein; a 34.9 1.3E+02 0.0045 27.1 8.4 47 413-463 218-266 (364)
324 1bpo_A Protein (clathrin); cla 34.5 2.4E+02 0.0081 26.7 9.5 133 179-322 349-482 (494)
325 3rjo_A Endoplasmic reticulum a 34.5 2.9E+02 0.0098 25.7 17.4 166 194-364 201-374 (419)
326 2nsz_A Programmed cell death p 34.3 1.5E+02 0.005 22.2 9.6 60 159-218 10-71 (129)
327 1qsa_A Protein (soluble lytic 33.6 3.7E+02 0.013 26.7 30.2 113 276-395 229-347 (618)
328 3ltm_A Alpha-REP4; protein eng 33.2 1.9E+02 0.0065 23.3 17.0 111 189-312 32-142 (211)
329 3eyy_A Putative iron uptake re 33.2 95 0.0033 23.8 6.0 35 312-346 33-67 (145)
330 4fke_A Aminopeptidase N; zinc 33.0 4.5E+02 0.015 27.6 15.3 92 194-290 690-787 (909)
331 3mv2_A Coatomer subunit alpha; 32.9 2.7E+02 0.0091 24.9 12.7 134 200-366 124-262 (325)
332 1mzb_A Ferric uptake regulatio 32.6 98 0.0034 23.4 5.9 60 287-347 9-69 (136)
333 2fu4_A Ferric uptake regulatio 32.3 1.1E+02 0.0038 20.3 6.0 61 285-346 6-67 (83)
334 2xai_A ASB-9, ankyrin repeat a 32.3 2.1E+02 0.0073 24.1 8.9 187 303-510 7-196 (261)
335 4b4t_S RPN3, 26S proteasome re 32.2 3.5E+02 0.012 26.1 11.1 64 369-432 233-299 (523)
336 3aji_A 26S proteasome non-ATPa 31.7 2.1E+02 0.0072 23.3 9.3 20 267-286 9-28 (231)
337 2keb_A DNA polymerase subunit 31.5 1.4E+02 0.0047 21.1 6.6 31 245-275 28-58 (101)
338 3jxi_A Vanilloid receptor-rela 30.8 2.3E+02 0.008 23.6 8.9 20 199-218 11-30 (260)
339 3eu9_A Huntingtin-interacting 30.4 78 0.0027 26.1 5.7 25 479-503 213-237 (240)
340 2xig_A Ferric uptake regulatio 30.3 1.9E+02 0.0064 22.3 8.6 37 183-219 19-55 (150)
341 1wgl_A TOLL-interacting protei 30.2 52 0.0018 20.8 3.2 22 274-295 36-57 (59)
342 3kae_A CDC27, possible protein 30.2 2.1E+02 0.0072 22.8 7.8 55 271-325 72-143 (242)
343 2r9g_A AAA ATPase, central reg 30.0 2.3E+02 0.0078 23.2 10.1 61 267-328 17-85 (204)
344 2w57_A Ferric uptake regulatio 29.5 1.1E+02 0.0039 23.5 5.9 36 312-347 33-68 (150)
345 2jul_A Calsenilin; EF-hand, ca 29.2 1.7E+02 0.0059 24.8 7.7 147 173-323 91-256 (256)
346 3ltj_A Alpharep-4; protein eng 29.1 2.2E+02 0.0075 22.7 18.8 122 189-324 58-179 (201)
347 2pnn_A Transient receptor pote 28.7 72 0.0025 27.3 5.2 22 235-256 19-40 (273)
348 3bge_A Predicted ATPase; struc 28.3 2.4E+02 0.0083 23.0 8.7 44 267-310 10-56 (201)
349 1lsh_A Lipovitellin (LV-1N, LV 28.2 5.8E+02 0.02 27.3 22.3 77 136-217 289-366 (1056)
350 3ctd_A Putative ATPase, AAA fa 28.1 2.5E+02 0.0087 23.1 8.5 32 240-271 49-80 (213)
351 4fke_A Aminopeptidase N; zinc 27.5 5.5E+02 0.019 26.9 16.9 160 335-500 690-858 (909)
352 2yru_A Steroid receptor RNA ac 27.5 1.9E+02 0.0064 21.4 7.8 42 283-324 48-89 (118)
353 3ygs_P Procaspase 9; apoptosis 27.1 95 0.0033 21.9 4.6 37 170-209 51-87 (97)
354 4gq2_M Nucleoporin NUP120; bet 26.9 4.9E+02 0.017 27.5 11.9 27 333-359 899-925 (950)
355 2dod_A Transcription elongatio 26.3 69 0.0023 21.9 3.5 33 206-239 16-48 (82)
356 1mzb_A Ferric uptake regulatio 26.3 1.9E+02 0.0064 21.8 6.5 56 221-277 13-69 (136)
357 2rfa_A Transient receptor pote 26.1 2.7E+02 0.0091 22.7 8.3 29 478-506 156-184 (232)
358 3aji_A 26S proteasome non-ATPa 26.1 1.2E+02 0.0039 25.0 5.9 17 235-251 12-28 (231)
359 2etb_A Transient receptor pote 25.7 1.6E+02 0.0056 24.6 7.0 55 232-287 5-69 (256)
360 4ets_A Ferric uptake regulatio 25.5 1.2E+02 0.0042 23.7 5.5 70 278-348 14-86 (162)
361 1wty_A Hypothetical protein TT 25.3 1.7E+02 0.0059 21.4 6.0 66 242-313 4-70 (119)
362 1oai_A Nuclear RNA export fact 25.2 39 0.0013 21.3 1.9 23 203-225 33-55 (59)
363 3eyy_A Putative iron uptake re 25.1 1.7E+02 0.0059 22.3 6.1 56 220-277 13-68 (145)
364 2p1h_A APAF-1, apoptotic prote 25.1 1.7E+02 0.0059 20.2 6.8 12 205-216 51-62 (94)
365 3d5l_A Regulatory protein RECX 25.1 3E+02 0.01 22.9 10.6 50 207-258 93-142 (221)
366 3ctd_A Putative ATPase, AAA fa 25.0 2.9E+02 0.01 22.8 9.8 63 266-328 37-107 (213)
367 1ug3_A EIF4GI, eukaryotic prot 25.0 3.7E+02 0.013 24.0 11.2 26 264-289 14-39 (339)
368 1z5h_A Tricorn protease intera 24.5 3.8E+02 0.013 27.5 10.3 86 336-431 591-677 (780)
369 3ygs_P Procaspase 9; apoptosis 23.9 1.3E+02 0.0044 21.1 4.8 37 205-246 52-88 (97)
370 3t8k_A Uncharacterized protein 23.9 2.7E+02 0.0093 22.0 8.4 134 373-506 41-184 (186)
371 1lsh_A Lipovitellin (LV-1N, LV 23.8 6.9E+02 0.024 26.7 24.1 193 119-323 309-521 (1056)
372 2yru_A Steroid receptor RNA ac 22.8 1.4E+02 0.0048 22.0 4.8 43 425-467 48-90 (118)
373 1uzc_A Hypothetical protein FL 22.5 78 0.0027 20.9 3.1 32 206-238 14-45 (71)
374 3kae_A CDC27, possible protein 22.4 3E+02 0.01 22.0 7.4 27 262-288 115-141 (242)
375 2o03_A Probable zinc uptake re 21.9 1.3E+02 0.0043 22.5 4.7 46 302-347 16-61 (131)
376 2w57_A Ferric uptake regulatio 21.8 2.3E+02 0.0077 21.8 6.3 56 221-277 12-68 (150)
377 2o03_A Probable zinc uptake re 21.4 1.6E+02 0.0054 22.0 5.2 44 268-311 17-60 (131)
378 4b4t_S RPN3, 26S proteasome re 21.1 5.6E+02 0.019 24.7 13.7 65 226-290 231-299 (523)
379 2ijq_A Hypothetical protein; s 20.7 3.1E+02 0.011 21.5 8.4 13 417-429 46-58 (161)
380 2p22_A Suppressor protein STP2 20.7 95 0.0033 24.8 3.8 54 437-491 110-163 (174)
381 3mwm_A ZUR, putative metal upt 20.4 1.4E+02 0.0049 22.5 4.8 45 267-311 19-63 (139)
382 3mwm_A ZUR, putative metal upt 20.3 1.1E+02 0.0038 23.2 4.1 49 300-348 17-65 (139)
383 2p22_A Suppressor protein STP2 20.0 1.1E+02 0.0037 24.4 3.9 53 154-206 109-161 (174)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-33 Score=286.78 Aligned_cols=400 Identities=9% Similarity=-0.070 Sum_probs=296.4
Q ss_pred HHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 010313 85 VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG 162 (513)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l 162 (513)
+..++..+ .+.++..++...+.++. +..|+..++..+...+ .++.+.|..+|+.+.. .+++..+++.+
T Consensus 87 ~~~~~~~~-~~~g~~~~A~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~l 156 (597)
T 2xpi_A 87 LRLWRHDA-LMQQQYKCAAFVGEKVL----DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-----YNRSSACRYLA 156 (597)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-----GGTCHHHHHHH
T ss_pred HHHHHHHH-HHccCchHHHHHHHHHH----hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-----cccchhHHHHH
Confidence 34444444 33455566666665553 3356667777666666 4577778888776533 35678888888
Q ss_pred HHHhcccCCHHHHHHHHHHHHhc---------------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----
Q 010313 163 IKFAGRINNVDLAADLFAEAANK---------------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN----- 221 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~---------------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g----- 221 (513)
+.+|.+.|++++|.++|+++... +.+ +..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 88888888888888888843222 122 477888888888888888888888888765310
Q ss_pred ----------------------------------------------------------------CCCCHHHHHHHHHHHH
Q 010313 222 ----------------------------------------------------------------ISPSIVTYNTLISVFG 237 (513)
Q Consensus 222 ----------------------------------------------------------------~~p~~~~~~~li~~~~ 237 (513)
.++|..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 0256666777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010313 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 77777777777777776543 256667777777777777777777777776432 3457888888888888888888888
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010313 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.+.++.+.+....+...+. .++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL--FLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888887752 346778888888888888888888887777666655554442 58888888899999999998888743
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010313 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.
T Consensus 472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 445677888888999999999999998888765 55676 6788888899999999999999998888766 55
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+..+|..+..+|.+.|++++|.++|+++.+.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 7888888999999999999999999888764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-33 Score=283.84 Aligned_cols=373 Identities=9% Similarity=-0.088 Sum_probs=300.5
Q ss_pred CchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010313 118 SNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195 (513)
Q Consensus 118 p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (513)
++...|..++..+ .++++.|..+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHH
Confidence 5778889999887 4688999999999875 4468899999999999999999999999998643 248899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010313 196 LLGAYMYNGLSDKCQSLFRDLKKEA--------------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--- 258 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--- 258 (513)
++.+|.+.|++++|+++|+++.... |..++..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 9999999999999999999643221 23446899999999999999999999999999765421
Q ss_pred -------------------------------------------------------------------CCHHHHHHHHHHH
Q 010313 259 -------------------------------------------------------------------PNVFTYNYLIAGY 271 (513)
Q Consensus 259 -------------------------------------------------------------------p~~~~~~~li~~~ 271 (513)
++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 4566667777777
Q ss_pred HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010313 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
.+.|++++|.++|++|.+.+ ..+..++..++.++.+.|++++|.++++++.+. .+.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHH
Confidence 77777777777777776543 225566777777777777777777777777654 3457788888999999999998888
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010313 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 431 (513)
+.++.+.++.+.+...|. .++.+|.+.|++++|+++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWI--GFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887777666555555553 58889999999999999999988743 44566788899999999999999999999887
Q ss_pred cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY----KIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 432 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 470 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 470 LFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 653 36788999999999999999999999988776 66777 7889999999999999999999999988764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1e-32 Score=271.39 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=180.8
Q ss_pred HHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCC---------
Q 010313 137 ALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGL--------- 205 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~--------- 205 (513)
+..+.+.+.+.. .... ...++.+|.+|++.|++++|+++|++|.+.|+ ||..+||+||.+|++.+.
T Consensus 9 ~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 9 SENLSRKAKKKA---IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred HHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 334444444332 3333 34688999999999999999999999999999 599999999999998765
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010313 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (513)
+++|.++|++|... |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|+
T Consensus 86 l~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 68899999999986 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010313 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
+|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998864
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=4.1e-31 Score=259.93 Aligned_cols=180 Identities=16% Similarity=0.131 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 010313 173 DLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL--------- 241 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--------- 241 (513)
..+..+.+++.+++.. +...++.+|.+|++.|++++|+++|++|.+. |++||..|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4456666777777764 3456899999999999999999999999987 999999999999999998765
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010313 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 321 (513)
++.|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 010313 322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353 (513)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 353 (513)
|.+.|+.||..+|++||.+|++.|++++|.++
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999999999887777777655544333
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.8e-25 Score=215.65 Aligned_cols=357 Identities=10% Similarity=-0.061 Sum_probs=300.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|.+.+..+.+. .|.+...+..+...+.+.|++++|...++...+..+.+..+|..+...|.+.|++++|+
T Consensus 12 ~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 56888899888877664 24466777888888899999999999999988877678999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010313 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+.|+++.+. .+.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.++|+++.+.
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999864 2345668999999999999999999999999886432 4567777888888899999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010313 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
. .-+..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++......+.+...+
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-- 240 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-- 240 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH--
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH--
Confidence 3 2247899999999999999999999999998864 44677888999999999999998888776666655544444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010313 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
..+...|...|++++|++.|+++++. .|.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 25888999999999999999999884 34456678999999999999999999999998765 4477889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.|++++|...++++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999998764 556888999999999999999999999999864
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.2e-24 Score=204.46 Aligned_cols=356 Identities=10% Similarity=0.040 Sum_probs=299.5
Q ss_pred cCchhHHHHHHHH---HcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH
Q 010313 117 HSNGYAFVELMKQ---LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY 193 (513)
Q Consensus 117 ~p~~~~~~~~l~~---~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 193 (513)
.|+.......+.. -.++.+.|..+++...+. .+.+..+|..+..+|.+.|++++|.+.|+++.+..+.+..+|
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 104 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHH
Confidence 4554433333333 367889999999877764 356889999999999999999999999999998876688899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010313 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (513)
..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.|+++.+... -+..+|+.+...+.
T Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 105 INLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFN 180 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 99999999999999999999999975 354 56778888999999999999999999998643 36789999999999
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010313 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 352 (513)
+.|++++|.+.|+++.+.+ .-+...|..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+
T Consensus 181 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998843 2247889999999999999999999999988863 3467889999999999999999988
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010313 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 432 (513)
.++...+..+.....+ ..+...+.+.|++++|.+.|+++.+. .|.+..++..+...+...|++++|.+.++++.+.
T Consensus 259 ~~~~al~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAY--CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHTCSSCHHHH--HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8887777665544444 35889999999999999999999985 4556778999999999999999999999999865
Q ss_pred CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010313 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 433 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
. +.+..++..+...|.+.|++++|...|+++.+.. +-+...|..+...+...|+
T Consensus 335 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 335 F-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 4 3357789999999999999999999999999764 4457778777777766553
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.2e-21 Score=192.74 Aligned_cols=339 Identities=9% Similarity=0.001 Sum_probs=247.3
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010313 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
+.+...+..+...+.+.|++++|.++|+++.+..+.+..+|..+..+|...|++++|+..|+++.+. .+.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 3356677777777888888888888888877766557778888888888888888888888887764 23456777788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHH------------HHHHHccCHHHHHHHHHHHHcCCCCCCH
Q 010313 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPN-V---FTYNYLI------------AGYMTAWMWGKVEEIYQMMKAGPVMPDT 296 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 296 (513)
..++.+.|++++|...|+++.+.. |+ . ..+..+. ..+.+.|++++|+++|+++.+.. ..+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 888888888888888888887653 33 3 4555443 33777888888888888877643 2357
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH------
Q 010313 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN------ 370 (513)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------ 370 (513)
.++..+..+|.+.|++++|.++|+++.+.. +.+..++..+...|...|++++|...++......+.....+..
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 777888888888888888888888877653 3466777788888888888887777766665554443333210
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHH
Q 010313 371 ----VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444 (513)
Q Consensus 371 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 444 (513)
..+...+...|++++|.+.|++++......+. ...+..+...+.+.|++++|.+.++++.+.. +.+...|..+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 01378889999999999999999885433222 3468888999999999999999999987654 2367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CHhHHHHHHHHH
Q 010313 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA------------YATCG-----QRRKVNQVLGLM 499 (513)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m 499 (513)
..+|...|++++|...|+++.+.. +-+...+..+..+ |...| +.+++.+.++++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999998754 3355666666633 33344 556677777763
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.2e-21 Score=190.91 Aligned_cols=318 Identities=8% Similarity=-0.062 Sum_probs=258.5
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010313 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
.+...+.+.....+.+...|..+...+.+.|++++|+.+|+++.+. .+.+..+|..+..++...|++++|+..|+++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555554558899999999999999999999999999975 35678999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH----HHHHHH------------HHHHHhcCChHHHHH
Q 010313 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT----NTYLLL------------LRGYAHSGNLPRMEK 317 (513)
Q Consensus 254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~ 317 (513)
+.+. .+..+|..+..+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|..
T Consensus 88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8754 36889999999999999999999999999984 4553 555555 444889999999999
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010313 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
+|+.+.+.. +.+..++..+..+|.+.|++++|.+.++...+..+.....+ ..+...|...|++++|...|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998863 45788899999999999999999888887766655554444 258899999999999999999998753
Q ss_pred CCCchHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCc-cc--HhhHHHHHHHHHhcCCHHHHHHHHH
Q 010313 398 TSVTTVRIMRCI------------VSSYFRCNAVDKLANFVKRAESAGWR-LC--RSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 398 ~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
|.+...+..+ ...|.+.|++++|.++++++.+.... +. ...|..+...+.+.|++++|...++
T Consensus 242 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 --QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344445444 88999999999999999999875422 11 4578889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
++.+.. +.+...|..+..+|...|++++|.+.++++.+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 998765 457899999999999999999999999999874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-21 Score=196.22 Aligned_cols=358 Identities=8% Similarity=-0.078 Sum_probs=293.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++++.|...|+.+.+.. |+...|..+..+|.+.|++++|.+.|+++.+.++.+..+|..+..+|.+.|++++|+
T Consensus 19 ~g~~~~A~~~~~~al~~~-----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccHHHHHHHHHHHHhcC-----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH
Confidence 578889999999887743 688999999999999999999999999999887768889999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-----------------------------------------------------------------
Q 010313 211 SLFRDLKKEANISPS----------------------------------------------------------------- 225 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~----------------------------------------------------------------- 225 (513)
..|+++... + +++
T Consensus 94 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 94 FDLSVLSLN-G-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHS-S-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHhc-C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999988753 1 111
Q ss_pred --------------HHHHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHHcc
Q 010313 226 --------------IVTYNTLISVFGR---LLLVDHMEAAFQEIKD-----SNLS--------PNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 226 --------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~li~~~~~~g 275 (513)
...+......+.. .|++++|..+|+++.+ ..-. .+..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 2333333333443 8999999999999987 3111 23567888899999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010313 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
++++|.++|+++.+.. |+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...++
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998754 448889999999999999999999999998863 3467788999999999999999999888
Q ss_pred HHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Q 010313 356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (513)
...+..+.....+ ..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+....
T Consensus 329 ~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 329 KAKELDPENIFPY--IQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHTCSSCSHHH--HHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhChhhHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 8777766655444 258889999999999999999998854 334556888999999999999999999988754321
Q ss_pred -cc----HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 436 -LC----RSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 436 -p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
++ ...+..+...|.. .|++++|...++++.+.+ +.+..+|..+...|.+.|++++|.+.|++..+..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 3378889999999 999999999999998765 4577889999999999999999999999987653
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.1e-20 Score=182.44 Aligned_cols=337 Identities=7% Similarity=-0.144 Sum_probs=276.6
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...+......+.+.|++++|.+.|+++.+.+ |+...|..+..+|.+.|++++|++.|+++.+. .+.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHH
Confidence 4566777888999999999999999999876 48899999999999999999999999999975 24567899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC--------------------------------------------------------
Q 010313 236 FGRLLLVDHMEAAFQEIKDSNLSP-------------------------------------------------------- 259 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p-------------------------------------------------------- 259 (513)
+.+.|++++|...|+++.+.+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998764210
Q ss_pred ----------------------CHHHHHHHHHHHHH---ccCHHHHHHHHHHHHc-----CCCC--------CCHHHHHH
Q 010313 260 ----------------------NVFTYNYLIAGYMT---AWMWGKVEEIYQMMKA-----GPVM--------PDTNTYLL 301 (513)
Q Consensus 260 ----------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~t~~~ 301 (513)
+...+......+.. .|++++|..+|+++.+ ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12333333333443 7999999999999887 3111 23678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010313 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 381 (513)
+...+...|++++|..+++.+.+.... ...+..+...|...|+++.|...++......+.....+ ..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--YHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH--HHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH--HHHHHHHHHhC
Confidence 999999999999999999999887543 88889999999999999998888877776655554444 35888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010313 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 461 (513)
++++|...+++..... +.+...+..+...+...|++++|.++++++.+... .+...+..+...|.+.|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998854 33455788899999999999999999999987543 25677888999999999999999999
Q ss_pred HHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHC
Q 010313 462 KEMENYKID-CS----KKTFWIMYYAYAT---CGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 462 ~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 502 (513)
+++.+..-. ++ ...|..+...+.. .|++++|.+.++++.+.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 998764311 11 3489999999999 99999999999998765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=4e-19 Score=178.88 Aligned_cols=360 Identities=11% Similarity=-0.009 Sum_probs=278.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|...|+.+.+.. +.+...|..+..+|.+.|++++|.+.|+++.+.++.+..+|..+...+...|++++|+
T Consensus 38 ~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 567888888888877653 4478888889999999999999999999988877778888899999999999999999
Q ss_pred HHHHHHHHhC-----------------------------------CCCCCHHH---------------------------
Q 010313 211 SLFRDLKKEA-----------------------------------NISPSIVT--------------------------- 228 (513)
Q Consensus 211 ~~~~~m~~~~-----------------------------------g~~p~~~~--------------------------- 228 (513)
+.|+.+.... ...|+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 8886442110 00111111
Q ss_pred ---HHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010313 229 ---YNTLISVFG--------RLLLVDHMEAAFQEIKDSNLSPN-------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 229 ---~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
...+...+. ..|++++|..+|+++.+.... + ..+|..+...+...|++++|.+.|+++.+.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 111111111 124788999999999875432 2 335777778888999999999999999884
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010313 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
.|+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|+++.|.+.++...+..+.....+.
T Consensus 273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~- 348 (537)
T 3fp2_A 273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI- 348 (537)
T ss_dssp --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH-
T ss_pred --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence 5778899999999999999999999999998864 456788999999999999999999988877776665554442
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----cHhhHHHHH
Q 010313 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----CRSLYHSKM 445 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~li 445 (513)
.+...+...|++++|.+.++++.+.. |.+..++..+...+...|++++|.+.++++.+..... ....+....
T Consensus 349 -~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 349 -QLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 58899999999999999999998854 4445678889999999999999999999986543111 111233445
Q ss_pred HHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 446 VMYASQ----------RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 446 ~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
..|... |++++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 667777 99999999999998875 5577889999999999999999999999987653
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.4e-18 Score=165.01 Aligned_cols=324 Identities=8% Similarity=-0.042 Sum_probs=221.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|...+..+...+.+.|++++|.+.|+++.+..+.+..+|..+...+...|++++|+..|+++.+. .+-+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 34556667777777777777777777777766556777777777777777777777777777754 1335567777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYL------------IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
.+...|++++|...|++..+.... .+...+..+ ...+...|++++|.++|+++.+.. ..+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 777777777777777777764320 133334333 466677777777777777776642 23566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch----------H
Q 010313 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL----------N 370 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~ 370 (513)
.+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++...+..+.....+. .
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence 77777777777777777777777652 345666777777777777777776666655555444333221 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010313 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV--RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 448 (513)
..+...+...|++++|.+.+++........+.. ..+..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 023666888899999999998888754332211 235557788888999999999999887654 23577888888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010313 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
...|++++|...|++..+.. +-+...+..+..+..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 99999999999999988765 334555656555544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=9.4e-18 Score=159.30 Aligned_cols=303 Identities=7% Similarity=-0.049 Sum_probs=251.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
++..+..+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|...|+++.+... -+...|..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence 4567888999999999999999999999875 355688999999999999999999999999998643 3678999999
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMP----DTNTYLLL------------LRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (513)
..+...|++++|.+.|+++.+. .| +...+..+ ...+...|++++|.++++.+.+.. +.+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 9999999999999999999884 45 34444444 578899999999999999998863 45778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH-----
Q 010313 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR----- 407 (513)
Q Consensus 333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 407 (513)
.+..+...+...|+++.|...++...+..+.....+ ..+...+...|++++|.+.+++..+..... ...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~ 231 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF--YKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCccc--hHHHHHHHHH
Confidence 899999999999999999888887777665554444 258889999999999999999998854433 33232
Q ss_pred -------HHHHHHHhcCcHHHHHHHHHHHHhcCCcccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010313 408 -------CIVSSYFRCNAVDKLANFVKRAESAGWRLCR----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476 (513)
Q Consensus 408 -------~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 476 (513)
.+...+...|++++|.+.++++.+.... +. ..+..+...|...|++++|...+++..+.. +.+..+|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 2366788999999999999998875533 22 235567788999999999999999998865 4578899
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 477 WIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
..+...|...|++++|.+.|++..+..
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999998653
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=193.42 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=122.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE--ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
-..+||+||.+||+.|++++|.++|++|.+. .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3568999999999999999999999887531 27899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc------HHHHHHHHH
Q 010313 267 LIAGYMTAWMW-GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE------FPLIRAMIC 339 (513)
Q Consensus 267 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 339 (513)
||+++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+ +++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999974 788999999999999999999999987766543 33333333 2233333 445556666
Q ss_pred HHHhcC
Q 010313 340 AYSKCS 345 (513)
Q Consensus 340 ~~~~~g 345 (513)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777654
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.1e-17 Score=168.27 Aligned_cols=336 Identities=7% Similarity=-0.069 Sum_probs=260.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...|..+...+.+.|++++|.+.|+++.+..+.+..+|..+..+|.+.|++++|++.|+++.+. -+.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 4567778888999999999999999999988779999999999999999999999999999875 24567899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCC------------------------------------CCCHH-----------------
Q 010313 236 FGRLLLVDHMEAAFQEIKDSNL------------------------------------SPNVF----------------- 262 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~------------------------------------~p~~~----------------- 262 (513)
+...|++++|...|+.+....- .|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999999964421100 01111
Q ss_pred -------------HHHHHHHHHH--------HccCHHHHHHHHHHHHcCCCCCC--------HHHHHHHHHHHHhcCChH
Q 010313 263 -------------TYNYLIAGYM--------TAWMWGKVEEIYQMMKAGPVMPD--------TNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 263 -------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~~ 313 (513)
....+...+. ..|++++|..+|+++.+.. |+ ..++..+...+...|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 1247889999999988743 44 335777778888999999
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010313 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 393 (513)
+|.+.++.+.+.. |+...+..+...|...|+++.|.+.++...+..+.....+ ..+...+...|++++|.+.|++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTY--YHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998864 4477888899999999999999888877776665544444 35888899999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 010313 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK----- 468 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 468 (513)
..... .+...+..+...+...|++++|.++++++.+... .+...+..+...|...|++++|...|+++.+.+
T Consensus 337 ~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCT--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 88543 3445688899999999999999999999887653 356778889999999999999999999887642
Q ss_pred CCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHC
Q 010313 469 IDCSKKTFWIMYYAYATC----------GQRRKVNQVLGLMCKN 502 (513)
Q Consensus 469 ~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 502 (513)
.......+..+...+... |++++|.+.+++..+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 112233345556777777 9999999999998765
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=6.4e-21 Score=192.66 Aligned_cols=160 Identities=11% Similarity=0.096 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010313 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKD---SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 301 (513)
-..|||+||++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356999999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--------cchHHH
Q 010313 302 LLRGYAHSGNL-PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--------PWLNVL 372 (513)
Q Consensus 302 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~ 372 (513)
||.++|+.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.+ +++.++++.+ +.. ..+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~-------vL~~Vrkv~P-~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-------VLKAVHKVKP-TFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH-------HHHHHGGGCC-CCCCCCCCCCCCCCCTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH-------HHHHHHHhCc-ccCCCCCCcccccchHH
Confidence 99999999985 789999999999999999999999998776643 4444555432 111 112225
Q ss_pred HHHHHHhcC---------CHHHHHHHHHH
Q 010313 373 LIRVYAKED---------CLEEMEKSIND 392 (513)
Q Consensus 373 li~~~~~~~---------~~~~a~~~~~~ 392 (513)
|.+.|.+.+ ..++-.+.|++
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 667777655 24566566654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.3e-17 Score=154.72 Aligned_cols=295 Identities=8% Similarity=-0.058 Sum_probs=208.5
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010313 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
.+.+...+..+...+...|++++|.++|+++.+..+.+...+..++..+...|++++|..+++++.+. .+.+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 34466677778888888899999999999988877667778888888888899999999999988875 2446678888
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010313 232 LISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 232 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
+...+...| ++++|...|++..+... .+...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 888888888 88999999988887643 356778888888888899999998888887743 123566777888888888
Q ss_pred ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010313 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
++++|.+.+++..+.. +.+...+..+...|...|++++| ...+
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A------------------------------------~~~~ 216 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA------------------------------------EKWF 216 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH------------------------------------HHHH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH------------------------------------HHHH
Confidence 8888888888887753 33445555555555555555544 4444
Q ss_pred HHHHhcC-------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010313 391 NDAFEHK-------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 391 ~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
++..... ..+....++..+...+...|++++|.+.++++.+.... +...+..+...|.+.|++++|...|++
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4433311 01223345667777777777777777777777655422 456677777777778888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHH-HhcCCH
Q 010313 464 MENYKIDCSKKTFWIMYYAY-ATCGQR 489 (513)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~-~~~g~~ 489 (513)
..+.. +.+...+..+..++ ...|+.
T Consensus 296 al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 296 ALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHccC-CCchHHHHHHHHHHHHHhCch
Confidence 76654 34566666666666 344543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=7.7e-18 Score=160.79 Aligned_cols=306 Identities=10% Similarity=-0.047 Sum_probs=186.1
Q ss_pred HhcccCCHHHHHH-HHHHHHhccCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010313 165 FAGRINNVDLAAD-LFAEAANKHLK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 165 ~~~~~g~~~~a~~-~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
.+...|++++|.+ .|++....... +...+..+...+.+.|++++|+..|+++.+. .+.+..+|..+..++.+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 3445567777776 66654433221 2455667777777777777777777777753 244566777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 010313 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
|++++|...|+++.+... .+..+|..+...|...|++++|.+.|+++.... |+. ..+..+... ...
T Consensus 112 g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~--- 178 (368)
T 1fch_A 112 EQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AGG--- 178 (368)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------
T ss_pred cCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hhh---
Confidence 777777777777776543 356677777777777777777777777776633 321 111111000 000
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010313 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
..+ ...+.. +..+...|++++|...++...+..+....+..+..+...|...|++++|...|++++..
T Consensus 179 --------~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 246 (368)
T 1fch_A 179 --------AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-- 246 (368)
T ss_dssp ----------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred --------hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 000 000001 11122444444444444444333333111222224677777778888888888887774
Q ss_pred CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------
Q 010313 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID-------- 470 (513)
Q Consensus 399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------- 470 (513)
.|.+..++..+...+...|++++|.+.++++.+... .+...+..+...|.+.|++++|...|+++.+..-.
T Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 344566788888889999999999999998876542 35677888889999999999999999888764311
Q ss_pred --CCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010313 471 --CSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 471 --p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
....+|..+..+|...|++++|..++++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1267899999999999999999888763
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.7e-16 Score=145.22 Aligned_cols=258 Identities=9% Similarity=-0.023 Sum_probs=193.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-Ch
Q 010313 128 KQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LS 206 (513)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~ 206 (513)
....++.+.|..+++.+.+.. +.+...+..++..+...|++++|..+++++.+..+.+...|..+...+...| ++
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 333679999999999887753 3456677788889999999999999999999987778899999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010313 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
++|.+.|++..+. .+.+...|..+...+...|++++|...|++..+.... +...+..+...|...|++++|.+.|++
T Consensus 108 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 108 EHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999864 2445788999999999999999999999999986543 467777899999999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC--------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010313 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD--------GKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358 (513)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 358 (513)
..+.. ..+...+..+...+...|++++|...+++..+... +....++..+...|.+.|++++|...++...
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98854 33588999999999999999999999998876421 2233445555555555555555544444443
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
+..+.....+. .+...+...|++++|.+.|++..+
T Consensus 264 ~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 264 VLIPQNASTYS--AIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHSTTCSHHHH--HHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hhCccchHHHH--HHHHHHHHhccHHHHHHHHHHHHc
Confidence 33333222221 244444444455555544444443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.6e-17 Score=157.12 Aligned_cols=289 Identities=10% Similarity=-0.012 Sum_probs=190.6
Q ss_pred CChHHHHH-HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010313 132 SRPRLALE-VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 132 ~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
++.+.|.. .++............+...+..+...+.+.|++++|.+.|+++.+..+.+..+|..+...+...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555665 55533222111111145668889999999999999999999999987778999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHcc
Q 010313 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY---------------LIAGYMTAW 275 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g 275 (513)
+.|+++.+. .+.+..++..+...+...|++++|...|+++.+.... +...+.. .+..+...|
T Consensus 119 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 119 SALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 999999875 2557889999999999999999999999999986532 2222221 233334777
Q ss_pred CHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010313 276 MWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 354 (513)
++++|.+.|+++.+..-. ++..++..+...+...|++++|...++++.+.. +.+..++..
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~------------------ 256 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK------------------ 256 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH------------------
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH------------------
Confidence 778888888777663211 146777777777777777777777777766642 223344444
Q ss_pred HHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010313 355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (513)
+...+...|++++|...|+++++. .|.+...+..+...|...|++++|.+.++++.+...
T Consensus 257 ------------------l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 257 ------------------LGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp ------------------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 444455555555555555555543 233445566666666666666666666666543221
Q ss_pred cc----------cHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010313 435 RL----------CRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 435 ~p----------~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
.. ...+|..+..+|...|++++|..+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 11 14566666777777777777766654
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=7.2e-14 Score=138.70 Aligned_cols=339 Identities=10% Similarity=-0.033 Sum_probs=273.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY---- 202 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~---- 202 (513)
.++.+.|...|+...+.+ +...+..|-..|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC
Confidence 357888988888877643 67788888888888 899999999999988764 66788888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 010313 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----A 274 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 274 (513)
.+++++|++.|++.... | +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .
T Consensus 128 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC
Confidence 78999999999998864 3 67788888888887 789999999999998864 78888889888988 8
Q ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCC
Q 010313 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSV 346 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 346 (513)
+++++|.++|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++
T Consensus 201 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999998865 67788888888886 789999999999988864 45566667777776 777
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---c
Q 010313 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-----DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---A 418 (513)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~ 418 (513)
.++|.+.++...+. +...- ...+...|... +++++|...|++..+.+. ...+..+...|...| +
T Consensus 275 ~~~A~~~~~~a~~~---~~~~a-~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 275 PLKALEWYRKSAEQ---GNSDG-QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----ATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp HHHHHHHHHHHHTT---TCHHH-HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHc---CCHHH-HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCccc
Confidence 77666655544332 22222 22466677766 899999999999888642 344666777777756 8
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHh
Q 010313 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRR 490 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 490 (513)
.++|.+++++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..|...|.+ .++++
T Consensus 347 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 899999999998775 56677888888888 899999999999999876 56778888899988 89999
Q ss_pred HHHHHHHHHHHCCC
Q 010313 491 KVNQVLGLMCKNGY 504 (513)
Q Consensus 491 ~A~~~~~~m~~~g~ 504 (513)
+|.++|++..+.|.
T Consensus 421 ~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 421 QAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999887763
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=5.4e-17 Score=154.81 Aligned_cols=94 Identities=5% Similarity=-0.108 Sum_probs=43.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010313 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
+..+...+.+.|++++|.++|+++.+..+.+..+|..+...|...|++++|++.|+++.+. .+.+..+|..+..++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHc
Confidence 4444444444444444444444444443334444444444444444444444444444432 12234444444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 010313 239 LLLVDHMEAAFQEIKD 254 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~ 254 (513)
.|++++|+..|+++.+
T Consensus 146 ~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 146 TSHQQDACEALKNWIK 161 (365)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 4444444444444443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=8.9e-17 Score=153.30 Aligned_cols=266 Identities=11% Similarity=-0.012 Sum_probs=205.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...|..+...+.+.|++++|+++|+++.+. .+.+..+|..+..++.+.|++++|+..|+++.+... .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 5667888889999999999999999999875 255778899999999999999999999999887643 3678899999
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CcHHHHHH
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMPD-----------TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KEFPLIRA 336 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 336 (513)
.+|.+.|++++|++.|+++.+.. |+ ...+..+...+...|++++|.++++++.+.... .+..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999987632 22 234445678888999999999999998886432 16778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010313 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416 (513)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (513)
+...|...|++++|.+.++...+..+.....+. .+..+|...|++++|+..|++.++. .|.+..++..+...|...
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN--RLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHC
Confidence 999999999999888888777776665554442 5888899999999999999998885 344577788899999999
Q ss_pred CcHHHHHHHHHHHHhcCCc-----------ccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010313 417 NAVDKLANFVKRAESAGWR-----------LCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
|++++|.+.++++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999987653211 1356788899999999999988887664
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=6.5e-16 Score=144.63 Aligned_cols=264 Identities=13% Similarity=-0.020 Sum_probs=170.8
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+.+.|++++|..+|+++.+..+.+...|..+...+...|++++|.+.|+++.+. .+.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHH
Confidence 445566777778888888888888888776667788888888888888888888888888764 244677788888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010313 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL--------------IA-GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 301 (513)
...|++++|.+.|+++.+.... +...+..+ .. .+...|++++|.+.++++.+.. ..+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 8888888888888888765322 22222222 11 2555666777777777766532 224666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010313 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 381 (513)
+...+...|++++|.+.++++.+.. +.+..++.. +...+...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~------------------------------------l~~~~~~~~ 220 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNK------------------------------------LGATLANGN 220 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH------------------------------------HHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHH------------------------------------HHHHHHHcC
Confidence 7777777777777777776666542 122333333 455555566
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHh
Q 010313 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYAS 450 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~ 450 (513)
++++|.+.+++..+.. +.+...+..+...|...|++++|.+.++++.+..... +...|..+..+|.+
T Consensus 221 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 6666666666655532 3344556666677777777777777777665433221 35566677777777
Q ss_pred cCCHHHHHHHHHH
Q 010313 451 QRRVEEMESVLKE 463 (513)
Q Consensus 451 ~g~~~~A~~~~~~ 463 (513)
.|++++|..++++
T Consensus 299 ~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 299 MNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHTTC
T ss_pred cCCHHHHHHHHHH
Confidence 7777777776653
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=8.1e-16 Score=143.96 Aligned_cols=266 Identities=6% Similarity=-0.053 Sum_probs=200.0
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...|..+...+...|++++|+.+|+++.+. .+.+...+..+..++...|++++|...|+++.+... .+..+|..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence 4456778888899999999999999999875 245778888899999999999999999999987643 3678888889
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLL--------------LR-GYAHSGNLPRMEKIYELVKHHVDGKEFP 332 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (513)
..+...|++++|.+.++++.+.. |+ ...+..+ .. .+...|++++|.++++++.+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 167 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM------- 167 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh-------
Confidence 99999999999999999988743 32 2222222 11 134444555555555554443
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010313 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412 (513)
Q Consensus 333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 412 (513)
.+..... ...+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 168 ----------------------------~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 168 ----------------------------NPNDAQL--HASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGAT 215 (327)
T ss_dssp ----------------------------STTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred ----------------------------CCCCHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 2221111 2246667777788888888888877743 4456778899999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHH
Q 010313 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC-----------SKKTFWIMYY 481 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~ 481 (513)
+...|++++|.+.++++.+... .+...+..+...|.+.|++++|.+.++++.+..-.. +...|..+..
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999999887653 357788999999999999999999999988754221 4788999999
Q ss_pred HHHhcCCHhHHHHHHHHH
Q 010313 482 AYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 482 ~~~~~g~~~~A~~~~~~m 499 (513)
++.+.|++++|.+++++.
T Consensus 295 ~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHTTCC
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 999999999999988754
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=5.8e-18 Score=158.97 Aligned_cols=305 Identities=11% Similarity=0.040 Sum_probs=139.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010313 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++.+.|.++++.+ ++..+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|+.
T Consensus 17 ~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3567787777643 34569999999999999999999999653 477799999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010313 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 77766653 4667889999999999999999988885 277789999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010313 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
..|..+..++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|..+... +. ..+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~---~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH---IV---VHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---TT---TCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---HH---hCHhhHH
Confidence 36999999999999999999999887 2788999999999999999988554221 11 1122122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCcc------cHhhHHH
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC--NAVDKLANFVKRAESAGWRL------CRSLYHS 443 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~p------~~~~~~~ 443 (513)
.++..|.+.|++++|..+++..+... +....+|+-+.-+|++- +++.+.++.|. .+.+++| +...|.-
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence 48888999999999999999888643 45567788777777664 34444444444 2334444 4667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010313 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490 (513)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 490 (513)
++-.|...++++.|... |.+. +++.--...+.....+..+.+
T Consensus 288 ~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 88889999999988763 4432 233323334445555555544
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=3.5e-13 Score=133.71 Aligned_cols=320 Identities=8% Similarity=-0.054 Sum_probs=262.1
Q ss_pred CHHHHHHHHHHhcc----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCH
Q 010313 155 TKEEYTKGIKFAGR----INNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 155 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
+...+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|++.... | +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 77888888888877 899999999999988763 67788899999999 89999999999999864 3 77
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHH
Q 010313 227 VTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 227 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t 298 (513)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 888888888988 889999999999999875 67788888888887 789999999999998865 7888
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcccchH
Q 010313 299 YLLLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK----CSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 299 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .++.++|.+.++...+. +.... .
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a-~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---GNSIA-Q 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---TCHHH-H
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHH-H
Confidence 9999999988 899999999999988865 55667778888875 67777766665544432 22222 2
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCCcccHhhH
Q 010313 371 VLLIRVYAK----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-----NAVDKLANFVKRAESAGWRLCRSLY 441 (513)
Q Consensus 371 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~ 441 (513)
..+...|.. .++.++|.+.|++..+.+ +...+..+...|... ++.++|.+.+++..+.+ +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 235566666 789999999999988754 234566777788877 89999999999998876 34566
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010313 442 HSKMVMYASQR---RVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 442 ~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 503 (513)
..+...|...| ++++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 77777777756 8899999999999875 57788889999998 899999999999998876
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.8e-13 Score=135.82 Aligned_cols=217 Identities=7% Similarity=0.001 Sum_probs=135.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010313 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-------SGNLP-------RMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
++..+|++..... .-+...|......+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4455555555421 1245566666666554 57766 7777777777632344577777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHhcCcHHHH
Q 010313 345 SVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS-YFRCNAVDKL 422 (513)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a 422 (513)
|++++|..+++...+....+. ..|. .++..+.+.|++++|.++|++..+.... ....|...... +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYI--QYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHH--HHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHH
Confidence 877777777766666544432 2332 4556666777788888888777764322 22223222211 2357778888
Q ss_pred HHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010313 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK-IDCS--KKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++++++
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888776543 1246667777777777888888888888777653 1222 336777777777778888887777776
Q ss_pred HH
Q 010313 500 CK 501 (513)
Q Consensus 500 ~~ 501 (513)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.6e-15 Score=139.16 Aligned_cols=278 Identities=8% Similarity=-0.001 Sum_probs=188.4
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010313 163 IKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 241 (513)
|+-....|++..|+..++......+.+ ....-.+.++|...|++++|+..++.. -.|+..++..+...+...|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence 344456788888888777655433222 345566677888888888888755431 24666777778888888888
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010313 242 VDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.++|++.++++...+..| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887766445 445556666778888888888888876 3467777778888888888888888888
Q ss_pred HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010313 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (513)
.+.+.. |+... ..+.. ..+..+...|++++|..+|+++.+. .|
T Consensus 155 ~~~~~~--p~~~~-~~l~~--------------------------------a~~~l~~~~~~~~eA~~~~~~~l~~--~p 197 (291)
T 3mkr_A 155 KMQDQD--EDATL-TQLAT--------------------------------AWVSLAAGGEKLQDAYYIFQEMADK--CS 197 (291)
T ss_dssp HHHHHC--TTCHH-HHHHH--------------------------------HHHHHHHCTTHHHHHHHHHHHHHHH--SC
T ss_pred HHHhhC--cCcHH-HHHHH--------------------------------HHHHHHhCchHHHHHHHHHHHHHHh--CC
Confidence 877653 33211 11111 1222333457888888888888875 35
Q ss_pred chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 010313 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE-MESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
.+..+++.+..++.+.|++++|.+.++++.+... -+..++..++..+...|+.++ +.++++++.+.+ |+.. .+
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~---~~ 271 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHP---FI 271 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCH---HH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCh---HH
Confidence 5677788888888889999999998888876653 266778888888888888865 567888887654 3322 23
Q ss_pred HHHHHhcCCHhHHHH
Q 010313 480 YYAYATCGQRRKVNQ 494 (513)
Q Consensus 480 i~~~~~~g~~~~A~~ 494 (513)
.+...+.+.++++..
T Consensus 272 ~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 272 KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3.9e-17 Score=153.34 Aligned_cols=327 Identities=8% Similarity=-0.032 Sum_probs=148.3
Q ss_pred CchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010313 118 SNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195 (513)
Q Consensus 118 p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (513)
++..+|..+.++.. ++.+.|.+.|.. .+|...|..++..+...|++++|+..++...+ ..+++.+.+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~ 99 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHH
Confidence 44457887777774 467778887752 24777899999999999999999997776655 3556788899
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010313 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|
T Consensus 100 Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 162 (449)
T ss_dssp ---------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence 9999999999999887773 367779999999999999999999999977 35899999999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010313 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|.++++...++
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988 278899999999999999999966554322 233334568888999998888777766
Q ss_pred HHHhCCCCCcccchHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010313 356 LMRLIPEKEYRPWLNVLLIRVYAKE--DCLEEMEKSINDAFEHKTSVT------TVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
.-..+.+.....++ -+.-.|++- +++.+.++.|. .+-+.|+ ...+|..+.-.|.+.++++.|...
T Consensus 232 ~aL~le~ah~~~ft--el~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t-- 304 (449)
T 1b89_A 232 AALGLERAHMGMFT--ELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT-- 304 (449)
T ss_dssp HHTTSTTCCHHHHH--HHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHhCCcHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 65555544444443 344444443 45555555553 2212121 345677777777788888877652
Q ss_pred HHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010313 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496 (513)
Q Consensus 428 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (513)
|.++ .++..--..+.+...+..+.+--.+...=..+ -.|.. .+-|+.++...=++..+.++|
T Consensus 305 -m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 305 -MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp -HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHHHHHHHH
T ss_pred -HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcHHHHHHH
Confidence 3322 23434445555666666666544444333332 12322 445555554444444444433
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.5e-13 Score=137.86 Aligned_cols=373 Identities=9% Similarity=-0.004 Sum_probs=264.6
Q ss_pred chhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHH
Q 010313 119 NGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197 (513)
Q Consensus 119 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li 197 (513)
+...|..++... .++.+.|..+|+.+.+. .|.+...|..++..+.+.|++++|.++|++..... |+...|...+
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence 555777777754 56888999999988764 46688899999999999999999999999999875 4777888877
Q ss_pred HHH-HHcCChHHHHH----HHHHHHHhCCCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHH
Q 010313 198 GAY-MYNGLSDKCQS----LFRDLKKEANISP-SIVTYNTLISVFGR---------LLLVDHMEAAFQEIKDSNLSPNVF 262 (513)
Q Consensus 198 ~~~-~~~g~~~~A~~----~~~~m~~~~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 262 (513)
... ...|+.++|.+ +|+......|..| +...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45678877765 7777765546554 46678887776655 688999999999998731111124
Q ss_pred HHHHHHHHHH-------------HccCHHHHHHHHHHHH------cCC---CCCC--------HHHHHHHHHHHHhc---
Q 010313 263 TYNYLIAGYM-------------TAWMWGKVEEIYQMMK------AGP---VMPD--------TNTYLLLLRGYAHS--- 309 (513)
Q Consensus 263 ~~~~li~~~~-------------~~g~~~~a~~~~~~m~------~~g---~~p~--------~~t~~~ll~~~~~~--- 309 (513)
.|.......- +.+++++|..+++++. +.. +.|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 4544333211 2346777877777632 221 3444 24555555433322
Q ss_pred -CCh----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHh-CCCCCcccch
Q 010313 310 -GNL----PRMEKIYELVKHHVDGKEFPLIRAMICAYSK-------CSVTD-------RIKKIEALMRL-IPEKEYRPWL 369 (513)
Q Consensus 310 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~ 369 (513)
++. +.+..+|++.... .+.+...|..+...+.+ .|+++ .|..+++...+ ..+.....|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 3677889988876 34577888888888875 68876 56666554443 3333333442
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH-H
Q 010313 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV-M 447 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~ 447 (513)
.++..+...|++++|..+|+++++.. |.+ ..+|...+..+.+.|++++|.++|++..+.... +...|..... .
T Consensus 326 --~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 --AYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred --HHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 57888889999999999999999853 333 347888888899999999999999999865321 2233322222 2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
+...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 346899999999999988764 4468899999999999999999999999998864
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=6.1e-15 Score=135.30 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.++..|.+.|++++|.+.|+++.+............+.+..+...|++++|..+|+++.+.. +.+...++.+..++.+.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 46677788888888888888888754322112222333444556699999999999998764 45788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHHC
Q 010313 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK-VNQVLGLMCKN 502 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 502 (513)
|++++|...|++..+.+ +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 214 g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999998876 5678899999999999999976 57888888754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=7.3e-14 Score=138.01 Aligned_cols=365 Identities=9% Similarity=0.010 Sum_probs=197.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc--------CCCHhH
Q 010313 126 LMKQLGSRPRLALEVLNWRRRQ-----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH--------LKTIGT 192 (513)
Q Consensus 126 ~l~~~~~~~~~a~~~~~~~~~~-----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~ 192 (513)
.+....++.++|++.|+...+. .....+-...+|+.+..+|...|++++|...+++..+.. .....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3444467778888888776653 111122345677778888888888888888877765421 113456
Q ss_pred HHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010313 193 YNALLGAYMYN--GLSDKCQSLFRDLKKEANISPS-IVTYNTLISV---FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 193 ~~~li~~~~~~--g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|++.+++..+... .+..++..
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~ 214 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHH
Confidence 66666555554 3577888888887754 343 4444444433 3445667777877777776543 24555655
Q ss_pred HHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010313 267 LIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 267 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
+...+.. .|++++|.+++++..... ..+..++..+...+...|++++|.+.+++..+.. +.+..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 5554444 356677888887776533 2346677778888888888888888888777653 345566666666665
Q ss_pred hcCC-------------------hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010313 343 KCSV-------------------TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403 (513)
Q Consensus 343 ~~g~-------------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 403 (513)
..+. .+.+...++...+..+.....+. .+...|...|++++|++.|++.+.....+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS--ILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH--HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh--hHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 3211 12222223333333333333332 36666666777777777776666543222211
Q ss_pred -HHHHHHHH-HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 404 -RIMRCIVS-SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481 (513)
Q Consensus 404 -~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (513)
.++..+.. .....|+.++|++.+++..+.. |+.... .+..+.+.++++.....+ +.+..+|..+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~ 438 (472)
T 4g1t_A 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSKN-GADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHHC-C-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 11222221 2235566677777666665433 221111 112233444455544444 556789999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCC-CCCCCC
Q 010313 482 AYATCGQRRKVNQVLGLMCKNGY-DVPVNA 510 (513)
Q Consensus 482 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t 510 (513)
.|...|++++|++.|++..+.|- .|+..+
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHCC---------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 99999999999999999987653 344443
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.4e-14 Score=124.98 Aligned_cols=224 Identities=9% Similarity=-0.025 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CCCC----HHHH
Q 010313 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VMPD----TNTY 299 (513)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~ 299 (513)
...|..+...+...|++++|+..|++..+.. .+..+|..+..++...|++++|++.|++..+.. ..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777888888888888888877766 577777778888888888888888887776521 1112 4677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHh
Q 010313 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 379 (513)
..+...+...|++++|.+.|++..+.. |+.. .+.+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~~------------------------------------ 117 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILTK------------------------------------ 117 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHHH------------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHHH------------------------------------
Confidence 777777777788888877777776642 2321 2223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010313 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
.|++++|.+.++++.. ..+.+...+..+...+...|++++|.+.++++.+.... +...|..+...|...|++++|..
T Consensus 118 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444544444444 22333444555555555555555555555555443321 34445555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010313 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.+++..+.+ +.+...|..+...+.+.|++++|.+.+++..
T Consensus 195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555443 2334555555555555555555555555544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=9.8e-14 Score=121.51 Aligned_cols=196 Identities=13% Similarity=0.004 Sum_probs=151.6
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010313 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
|++...+..+...+.+.|++++|...|++..+..+.+...|..+...+.+.|++++|+..|++..+. -+-+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4577788888889999999999999999998887778899999999999999999999999998875 24456788888
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010313 233 ISVFGRL-----------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301 (513)
Q Consensus 233 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 301 (513)
..++.+. |++++|+..|++..+.... +...|..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 8889999888888875432 57778888888888889999998888888765 57888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010313 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 354 (513)
+..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888889988888888887763 345666777777777777766655443
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=8.6e-12 Score=130.87 Aligned_cols=322 Identities=11% Similarity=0.071 Sum_probs=183.8
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010313 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
.|+.+....-.-...+.+.+|+++++.+.... ..+.-+...-+.++....+. +..+..+..++.... ...-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHHH
Confidence 44444444444444667777777777666322 11223444555555555554 344444444444321 12335
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010313 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 566667777778877777642 12222333333 5566777777777552 46677777788888888
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010313 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 356 (513)
+++|++.|.+. -|...|..++.+|.+.|++++|.+++....+.. ++....+.++.+|++.++++..+..
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence 88888877553 356677777888888888888888887766643 2222233477777777766533222
Q ss_pred HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010313 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 436 (513)
. ...+...+ . .+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++..
T Consensus 1190 I---~~~n~ad~-~-~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1190 I---NGPNNAHI-Q-QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred H---hCCCHHHH-H-HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence 1 12222222 2 3667777777777777777653 247777777777777777777777652
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010313 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444444445554444443332 122333444555555555555555555543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.2e-13 Score=122.51 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYN 230 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~ 230 (513)
...|..+...+...|++++|.+.|++..+.. .+...|..+...+...|++++|++.|++..+.. ...++ ..+|.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3456667777777888888888888777766 677777788888888888888888887776531 01112 46777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010313 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
.+...+...|++++|...|++..+.. |+. ..+.+.|++++|.+.++++.... ..+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 77777778888888888887777642 442 33555677777777777776632 113556667777777777
Q ss_pred ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010313 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
++++|.+.++++.+.. +.+..++..+.. .|...|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~------------------------------------~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAA------------------------------------ALAKLMSFPEAIADC 196 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHH------------------------------------HHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHH------------------------------------HHHHhCCHHHHHHHH
Confidence 7777777777776642 223444444444 444455555555555
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010313 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 431 (513)
++.++.. |.+...|..+...+...|++++|.+.+++..+
T Consensus 197 ~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554432 22344455555556666666666665555543
No 38
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=1.7e-11 Score=128.77 Aligned_cols=349 Identities=11% Similarity=0.074 Sum_probs=238.0
Q ss_pred HHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010313 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169 (513)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 169 (513)
..++-..+...+++..+++.+. .......++. -.+.++.|.++.+.+ -+..+|..+..++.+.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie-~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIE-HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH-HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Confidence 3344455666777777766532 1122233333 234677777776633 1577888888888888
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010313 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (513)
|++++|.+.|.+. .|...|..++.+|.+.|++++|.+.|...++. .++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999988888653 37778888888888889999998888876653 244444445888888888887544332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010313 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
+ .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 256677777888888889999999888884 37888888888889988888888765 3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010313 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI 409 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 409 (513)
+..+|..+-.+|...|++..|..+..-+. ..+.....++..|.+.|.+++|+.+++..+... +....+|+-+
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftEL 1320 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTEL 1320 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHH
Confidence 55778888888888887777665532110 111112258889999999999999998877643 5556677667
Q ss_pred HHHHHhc--CcHHHHHHHHHHHHhcCCc------ccHhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCC
Q 010313 410 VSSYFRC--NAVDKLANFVKRAESAGWR------LCRSLYHSKMVMYASQRRVEEMESV-------------LKEMENYK 468 (513)
Q Consensus 410 i~~~~~~--~~~~~a~~~~~~~~~~~~~------p~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~~ 468 (513)
...|++. +++.++.++|..- .+++ -+...|.-++-.|.+.|+++.|... |.+...
T Consensus 1321 aiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence 6666664 3555555555532 1222 2466788999999999999999832 222221
Q ss_pred CCCCHHHHHHHHHHHHhcC---------------CHhHHHHHHH
Q 010313 469 IDCSKKTFWIMYYAYATCG---------------QRRKVNQVLG 497 (513)
Q Consensus 469 ~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 497 (513)
-..|...|...+.-|...+ +++.+.++|.
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 1346777777777777666 6666666665
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=8.2e-12 Score=123.20 Aligned_cols=361 Identities=9% Similarity=-0.101 Sum_probs=231.9
Q ss_pred HHHHhhcCCChhHHHHHHhhhCCc-----cccccCc-hhHHHHHHHHH--cCChHHHHHHHHHHHHcCC----CCCCCCH
Q 010313 89 RDELLANVDDLDKVFRVLDEKGSC-----LFRRHSN-GYAFVELMKQL--GSRPRLALEVLNWRRRQAG----YGTPMTK 156 (513)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~-~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~----~g~~~~~ 156 (513)
+..+....++..+++..+.+...- .....|+ ..+|..+-..+ .++.+.|...++...+... .......
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 334445556777777777664211 0011232 33454443333 5789999999998876421 1112245
Q ss_pred HHHHHHHHHhccc--CCHHHHHHHHHHHHhccCCCHhHHHHHHHHH---HHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010313 157 EEYTKGIKFAGRI--NNVDLAADLFAEAANKHLKTIGTYNALLGAY---MYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 157 ~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
.++..+..++.+. +++++|++.|++..+..+.+...+..+..++ ...++.++|++.|++..+. -+.+..++..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHH
Confidence 6676666565544 5799999999999988776777777766553 4567889999999998864 2445667776
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHH
Q 010313 232 LISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGY 306 (513)
Q Consensus 232 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~ 306 (513)
+...+.. .|++++|.+.+++...... .+..++..+...|.+.|++++|++.|++..+. .|+ ..++..+..+|
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 6666554 4678899999999887654 47788999999999999999999999998874 354 67777777776
Q ss_pred Hhc-------------------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010313 307 AHS-------------------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367 (513)
Q Consensus 307 ~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (513)
... +..+.|...++...+.. +.+...+..+...|...|++++|.+.++...++.......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 532 23566777777777653 3455667889999999999999988887666654433221
Q ss_pred c-hHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHH
Q 010313 368 W-LNVLLIR-VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445 (513)
Q Consensus 368 ~-~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 445 (513)
. .+..+.. .+...|++++|+..|++.++-.. .... ..+..+.+.++++...... +.+..+|..+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~----------~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG 437 (472)
T 4g1t_A 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSRE----------KEKMKDKLQKIAKMRLSKN-GADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHH----------HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHH----------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 1 1111222 33467899999999999887433 2221 1122344455666555444 33678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 010313 446 VMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
..|...|++++|++.|++..+.|
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHCC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999988765
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=2e-12 Score=113.55 Aligned_cols=200 Identities=14% Similarity=-0.026 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+...+..+...+...|++++|.+.|+++.+..+.+...|..+...|...|++++|.+.|++..+. .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 55667777778888888888888888887766557778888888888888888888888887764 2446677777888
Q ss_pred HHHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010313 235 VFGRL-LLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 235 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
.+... |++++|...|+++.+.+..|+ ...|..+..++...|++++|++.|+++.+.. ..+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888876322233 5667777778888888888888888777642 22467777777788888888
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010313 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
++|.++++.+.+.....+...+..+...+...|+.+.+...++.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888877766532134445555555555555555554444443
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.4e-12 Score=116.97 Aligned_cols=190 Identities=11% Similarity=-0.031 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+...|++++|.+.|+++.+..+.+...|..+...|...|++++|++.|+++.+. .+.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHH
Confidence 344455555555666666666666655554445555666666666666666666666665543 123445555555556
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010313 237 GRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
...|++++|.+.|+++.+.+..| +...|..+...+.+.|++++|.+.|++..+.. ..+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666555422223 33445555555555666666666665555432 11345555555555555555555
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010313 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 350 (513)
..+++.+.+.. +.+...+..+...+.+.|+.++|
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHH
Confidence 55555555432 12333333333333333433333
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.7e-12 Score=117.86 Aligned_cols=195 Identities=10% Similarity=-0.015 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--IVTYNTLI 233 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~li 233 (513)
...+......+...|++++|.+.|++..+..+.+...|..+...|...|++++|++.|++.... +-.++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHH
Confidence 3455667778889999999999999999887767888999999999999999999999999863 22222 34588899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010313 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
..+...|++++|+..|++..+... .+..+|..+...|...|++++|++.|++..+.. ..+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987644 366889999999999999999999999988752 224667777773555566999
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC---hhHHHHHH
Q 010313 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV---TDRIKKIE 354 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~ 354 (513)
+|.+.|+++.+.. +.+...+..+...+...|+ .+.|...+
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 9999999988863 3345666666666666665 44444443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=2.8e-13 Score=118.56 Aligned_cols=210 Identities=11% Similarity=-0.040 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010313 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
++...+..+...+.+.|++++|+..|++..+.. .-+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 566788888889999999999999999988743 2257888889999999999999999999988863 34556666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010313 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
..|.+.+. . ... .+...|++++|+..|++.++. .|.+...+..+...+...|+
T Consensus 81 ~~~~~~~~------------~-~~~------------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 81 EAYVALYR------------Q-AED------------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHH------------T-CSS------------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhh------------h-hhh------------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC
Confidence 55554310 0 000 112348899999999998884 35566778889999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010313 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
+++|.+.++++.+.. .+...+..+..+|...|++++|...|++..+.+ +-+...+..+...+...|++++|.+.+++
T Consensus 134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998877 578888899999999999999999999998865 55778888999999999999999999887
Q ss_pred HH
Q 010313 499 MC 500 (513)
Q Consensus 499 m~ 500 (513)
..
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=4.2e-12 Score=120.46 Aligned_cols=185 Identities=8% Similarity=-0.048 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
..+|..+..++.+.|++++|++.|++..+..+.+..+|+.+..++...|+ +++|+..|++..+. -+-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 44566677777888889999999998888777788888888888888886 99999999888864 2446778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCChH
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH-SGNLP 313 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~ 313 (513)
++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 888889999999999888876543 778888888888888899999999888887432 257788888888888 55557
Q ss_pred HH-----HHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010313 314 RM-----EKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 314 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
+| ++.+++.++.. +.+...|+.+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccC
Confidence 77 46777776653 345666776666666655
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=3.9e-12 Score=114.03 Aligned_cols=201 Identities=6% Similarity=-0.053 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010313 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (513)
...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667777777888888888888888877643 2356777777778888888888888887776653 2244444444444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010313 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420 (513)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 420 (513)
|... |++++|.+.++++...+..+.+...+..+...+...|+++
T Consensus 115 ~~~~------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 115 LYEQ------------------------------------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HHHT------------------------------------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHH------------------------------------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 4444 4555555555544442222333444555555555555555
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010313 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 421 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|.+.++++.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.
T Consensus 159 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 159 QAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555544331 134445555555555555555555555555433 3344455555555555555555555555554
Q ss_pred H
Q 010313 501 K 501 (513)
Q Consensus 501 ~ 501 (513)
+
T Consensus 237 ~ 237 (252)
T 2ho1_A 237 R 237 (252)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2e-12 Score=117.33 Aligned_cols=246 Identities=11% Similarity=-0.004 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 010313 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP--NVFTYNYLIAG 270 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~ 270 (513)
+......+...|++++|+..|++..+. .+.+...+..+..++...|++++|+..|++..+.+..+ ...+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 334445555555555555555555542 12223345555555555555555555555555422111 12234555555
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010313 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 350 (513)
+...|++++|++.|++..+.. ..+..++..+...+...|++++|.+.+++..+. .+.+...+..
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~-------------- 147 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYE-------------- 147 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHH--------------
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHH--------------
Confidence 555555555555555554421 112344455555555555555555555444443 1112222222
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc---HHHHHHHHH
Q 010313 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA---VDKLANFVK 427 (513)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~ 427 (513)
+...+...+++++|.+.|++.++.. |.+...+..+...+...|+ +++|...++
T Consensus 148 ----------------------l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 148 ----------------------LGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp ----------------------HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 2212223347777777777776643 3334556666666666676 666777777
Q ss_pred HHHhcC-Cccc------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 428 RAESAG-WRLC------RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481 (513)
Q Consensus 428 ~~~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (513)
++.+.. -.|+ ...|..+...|...|++++|...|++..+.+ +-+...+..+..
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 664332 1122 2456677777888888888888888887755 334444444433
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.6e-12 Score=115.82 Aligned_cols=201 Identities=10% Similarity=-0.007 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
.+...|..+...+...|++++|.+.|++..+..+.+...+..+...+...|++++|++.|++..+. .+.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 355566667777778888888888888887766557778888888888888888888888887764 234667777788
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010313 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
..+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|.+.++++.+.. ..+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888776543 366777777788888888888888888776632 235667777777788888888
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010313 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
+|.+.++.+.+.. +.+..++..+...|.+.|++++|.+.++...+
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888887776652 23445555555555555555555554444333
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=1e-12 Score=119.41 Aligned_cols=249 Identities=10% Similarity=-0.025 Sum_probs=150.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010313 201 MYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (513)
...|++++|++.|+++.+.....+ +..+|..+...+...|++++|...|++..+... .+..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 345678888888888875311111 345677777888888888888888888776543 35777788888888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010313 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 358 (513)
+|.+.|++..+.. ..+..++..+...+...|++++|.+.++++.+.. |+.......+.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~------------------- 152 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLY------------------- 152 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH-------------------
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHH-------------------
Confidence 8888888877632 1246677777777888888888888887777643 22221111111
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--
Q 010313 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL-- 436 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-- 436 (513)
.+...|++++|...+++........ ...+ .++..+...++.++|.+.++.+.......
T Consensus 153 -----------------~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 153 -----------------LAEQKLDEKQAKEVLKQHFEKSDKE--QWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp -----------------HHHHHHCHHHHHHHHHHHHHHSCCC--STHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred -----------------HHHHhcCHHHHHHHHHHHHhcCCcc--hHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 2233356666666665555432221 1122 24555556666666666666654322111
Q ss_pred -cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010313 437 -CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496 (513)
Q Consensus 437 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (513)
+...+..+...|.+.|++++|...|++..+.+ |+. +.....++...|++++|++.+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 14556667777777777777777777777644 321 223345566667777766654
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=4.5e-13 Score=121.84 Aligned_cols=244 Identities=9% Similarity=-0.065 Sum_probs=111.8
Q ss_pred ccCCHHHHHHHHHHHHhccC---C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010313 168 RINNVDLAADLFAEAANKHL---K-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
..|++++|++.|+++.+... + +..+|..+...+...|++++|++.|++..+. .+.+..+|..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 34455555555555544321 1 3444555555555555555555555555442 1223445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010313 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
+|...|++..+... .+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555555554321 13444555555555555555555555555442 2332233333333344455555555554444
Q ss_pred hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010313 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR-----PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
... +++...+. ++..+...++.+.+... +.+....... +..+..+...|...|++++|...|++.+...
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMER---LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHH---HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHH---HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 432 12222222 33334444433322222 2222211110 1112246677777778888888777777643
Q ss_pred CCchHHHHHHHHHHHHhcCcHHHHHHHH
Q 010313 399 SVTTVRIMRCIVSSYFRCNAVDKLANFV 426 (513)
Q Consensus 399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~ 426 (513)
|.+...+ ..++...|++++|++-+
T Consensus 246 -p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTTCHHH---HHHHHHHHHHHHC----
T ss_pred -chhHHHH---HHHHHHHHHHHhhHHHH
Confidence 3222223 22455667777776654
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=7.8e-12 Score=109.72 Aligned_cols=202 Identities=6% Similarity=-0.091 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010313 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
+...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45667777888888888888888888877643 2347778888888888888888888888877653 234445555555
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010313 340 AYSKC-SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 340 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
.|... |++++|...++...+.+........+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 55555 55555444444333310000001111124444444444444444444444422 2223334444444444444
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010313 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+++|.++++++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44444444444332211223333344444444444444444444443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=5e-11 Score=108.26 Aligned_cols=228 Identities=12% Similarity=-0.009 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+. + +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence 5667777777777888888888888877762 256677777788888 88888888888887764 3 677777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010313 231 TLISVFGR----LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 231 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
.+...+.. .+++++|+..|++..+.+ +...+..+...|.. .|++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77778877 888888888888877764 66777777777777 788888888888877754 56667777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010313 303 LRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA 378 (513)
Q Consensus 303 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 378 (513)
...|.. .+++++|...|++..+.+ +...+..+...|.. +..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~--------------------------------g~~ 197 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH--------------------------------GEG 197 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--------------------------------TCS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc--------------------------------CCC
Confidence 777776 777888888877766653 22333333333333 000
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcC
Q 010313 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAG 433 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 433 (513)
..+++++|.+.|++..+.+. ...+..+...|.. .+++++|.+.+++..+.+
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 05566666666666555432 2335555666666 666777777777666655
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=5e-12 Score=119.93 Aligned_cols=254 Identities=7% Similarity=-0.051 Sum_probs=178.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+...|+.+...+.+.|++++|++.|++..+. -+-+...|+.+..++...|+ +++|+..|++..+.... +...|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 6788999999999999999999999999975 24457899999999999997 99999999999987653 78999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-cCC
Q 010313 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSV 346 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 346 (513)
..++.+.|++++|+..|+++.+.. .-+...|..+..++...|++++|+..++++++.. +.+...|+.+..+|.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999998843 2268899999999999999999999999999874 3477788888888877 454
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHH
Q 010313 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLAN 424 (513)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~ 424 (513)
.+.|. .+.+++.|++.+. ..|.+...|+.+...+...| ++++|.+
T Consensus 251 ~~eA~-------------------------------~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 251 NDRAV-------------------------------LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp CSHHH-------------------------------HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred chHHH-------------------------------HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 35442 1112233333333 22334445555555555555 4555655
Q ss_pred HHHHHHhcCCcccHhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 010313 425 FVKRAESAGWRLCRSLYHSKMVMYASQR---------RVEEMESVLKEM-ENYKIDCSKKTFWIMYYAY 483 (513)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~ 483 (513)
.+.++ +.. ..+...+..+...|.+.| .+++|.++|+++ .+.+ +-....|..+...+
T Consensus 298 ~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 298 QLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 55555 221 223444555555555542 235666666666 4433 22333444444433
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=1.9e-12 Score=125.34 Aligned_cols=273 Identities=10% Similarity=-0.052 Sum_probs=169.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CC
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I----VTYNTLISVFGRLLLVDHMEAAFQEIKDS----N-LS 258 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~ 258 (513)
....+..+...+...|++++|+..|++..+. .|+ . ..|..+...+...|++++|+..|++..+. + ..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 3455666778889999999999999999875 233 3 47888889999999999999999998753 1 11
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHH
Q 010313 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGN-----------------LPRME 316 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~ 316 (513)
....++..+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|+ +++|.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 23467788888899999999999999887652 1111 25577778888888888 67776
Q ss_pred HHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010313 317 KIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 317 ~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
+.+++..+. +..+ ...++.. +...|...|++++|++.++
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~------------------------------------la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGN------------------------------------LGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH------------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------------------------------------HHHHHHHcCChHHHHHHHH
Confidence 666654431 0000 1123333 4445555555555555555
Q ss_pred HHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010313 392 DAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 392 ~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
+.++.. .......++..+...|...|++++|.+.+++..+.... ....++..+...|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 544321 11111224555666666666666666666655432110 113445556666666677777666666
Q ss_pred HHHhCC----C-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010313 463 EMENYK----I-DCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 463 ~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+..+.. . .....+|..+...|.+.|++++|.+.+++..
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 554421 0 0113355566666667777777766666654
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=2.7e-12 Score=120.06 Aligned_cols=277 Identities=10% Similarity=-0.052 Sum_probs=168.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHH
Q 010313 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLS-PNVFT 263 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~ 263 (513)
+......+...|++++|+..|+++.+. . +.+ ...|..+...+...|++++|...+++..+. +-. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh-C-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 334445556666666666666666553 1 112 245555666666666666666666654421 111 12345
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 010313 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPRMEKI 318 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~ 318 (513)
+..+...+...|++++|.+.+++..+..- .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66666777777777777777766543100 012 3466677777777777 6666666
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 010313 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH-- 396 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 396 (513)
+++..+. +...++ .......+..+...+...|++++|.+.+++..+.
T Consensus 166 ~~~a~~~---------------~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSL---------------VTALGD----------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHH---------------HHHHTC----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHhcCC----------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6554321 000010 0000111224666677777888887777766542
Q ss_pred --CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----Ccc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 010313 397 --KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG----WRL-CRSLYHSKMVMYASQRRVEEMESVLKEMENYK- 468 (513)
Q Consensus 397 --~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 468 (513)
+.......++..+...+...|++++|.+.+++..+.. ..+ ...++..+...|...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1112223367778888889999999999888775321 111 14567778888999999999999998876531
Q ss_pred ---C-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 469 ---I-DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 469 ---~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
- .....++..+...|.+.|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 112447778889999999999999999988765
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.5e-12 Score=125.93 Aligned_cols=275 Identities=10% Similarity=-0.052 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC-CCCHHH
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----GTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANI-SPSIVT 228 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~-~p~~~~ 228 (513)
..+..+...+...|++++|.+.|++..+.+..+. ..|..+...|...|++++|++.|++..+. .+. .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444566677888999999999999888765544 57888888899999999999998887642 111 123457
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHH
Q 010313 229 YNTLISVFGRLLLVDHMEAAFQEIKDS----N-LSPNVFTYNYLIAGYMTAWM-----------------WGKVEEIYQM 286 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 286 (513)
+..+...+...|++++|...|++..+. + ......++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888899999999999988887653 1 11134577888888889999 8899888887
Q ss_pred HHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-Cc----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 010313 287 MKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KE----FPLIRAMICAYSKCSVTDRIKKIEAL 356 (513)
Q Consensus 287 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 356 (513)
..+. +-.+ ...++..+...+...|++++|.+.+++..+.... .+ ...+..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------------------- 268 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN-------------------- 268 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH--------------------
Confidence 6541 1111 2457888888999999999999999887653110 01 112333
Q ss_pred HHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010313 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 432 (513)
+...|...|++++|.+.+++.+... .......++..+...|...|++++|.+.+++..+.
T Consensus 269 ----------------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 269 ----------------LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp ----------------HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555555555555555444311 11112345566666666777777777766665432
Q ss_pred ----CC-cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010313 433 ----GW-RLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 433 ----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+. ......+..+...|.+.|++++|...|++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 112345666667777777777777777766653
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=4.9e-12 Score=121.97 Aligned_cols=276 Identities=10% Similarity=-0.072 Sum_probs=159.0
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDS----NLSP- 259 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 259 (513)
....+......+...|++++|+..|++..+. + +.+ ...|..+...+...|++++|...|++..+. +-.|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 5566777888899999999999999998875 1 223 357888888999999999999999887542 2111
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHH
Q 010313 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD----TNTYLLLLRGYAHSGN--------------------LPR 314 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~ 314 (513)
...++..+...|...|++++|...+++..+..- .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677888888899999999999988765210 012 4577788888888888 777
Q ss_pred HHHHHHHHHhc----cCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----ccchHHHHHHHHHhcCCHHH
Q 010313 315 MEKIYELVKHH----VDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY----RPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 315 a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 385 (513)
|.+.+++..+. +..+ ...++..+...|...|++++|...++...+...... ....+..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777665442 1111 123445555555555555555444433322211111 11112234445555555555
Q ss_pred HHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCHHH
Q 010313 386 MEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRVEE 456 (513)
Q Consensus 386 a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~ 456 (513)
|...+++.... +.......++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555554431 111111234444555555555555555555544322 1111 12334444455555555555
Q ss_pred HHHHHHHHHh
Q 010313 457 MESVLKEMEN 466 (513)
Q Consensus 457 A~~~~~~m~~ 466 (513)
|...+++..+
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.1e-10 Score=105.99 Aligned_cols=228 Identities=11% Similarity=-0.050 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010313 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
+..++..+...+...|++++|+..|++..+. -+...+..+...|.. .|++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888888888888888888873 356777778888888 888888888888887765 677888
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010313 301 LLLRGYAH----SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV 376 (513)
Q Consensus 301 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 376 (513)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-------------------------------- 123 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG-------------------------------- 123 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC--------------------------------
Confidence 88888888 888888888888877653 444555555555440
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh--
Q 010313 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS-- 450 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 450 (513)
....+++++|++.|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 000444555555555544432 12234444444554 556666666666555443 23444455555555
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 010313 451 --QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 451 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 503 (513)
.+++++|...|++..+.+ +...+..+...|.+ .+++++|.+.|++..+.|
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 566666666666655543 13445555555555 566666666666555443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=5.4e-12 Score=121.64 Aligned_cols=302 Identities=11% Similarity=-0.062 Sum_probs=211.3
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCCC
Q 010313 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISPS 225 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p~ 225 (513)
......+......+...|++++|...|++..+.+..+ ..+|..+...|...|++++|...|++.... .+..|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3456666777888888999999999999988876544 357888888899999999999998876432 111122
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHH
Q 010313 226 -IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGK 279 (513)
Q Consensus 226 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~ 279 (513)
..++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45677888888999999999998888764210 012 4478888888888999 888
Q ss_pred HHHHHHHHHc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC-CCc----HHHHHHHHHHHHhcCChhH
Q 010313 280 VEEIYQMMKA----GPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKE----FPLIRAMICAYSKCSVTDR 349 (513)
Q Consensus 280 a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~ 349 (513)
|.+.+++... .+-.+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 8888887654 12112 245778888889999999999999988765311 111 3367788888999999988
Q ss_pred HHHHHHHHHhCCCC----CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHH
Q 010313 350 IKKIEALMRLIPEK----EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDK 421 (513)
Q Consensus 350 a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~ 421 (513)
|...++....+... ......+..+...|...|++++|.+.+++.... +..+....++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 87776544433221 111222335788899999999999999887653 2222235567888999999999999
Q ss_pred HHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcCCH
Q 010313 422 LANFVKRAESA----GWRL-CRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 422 a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~ 454 (513)
|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999987542 2221 234455666666665554
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=2.8e-12 Score=114.19 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=122.4
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
....|..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|+..|++..+... .+..+|..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 4567888888889999999999999998863 345678888889999999999999999999887643 3678888888
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
..+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999887743 2357788888888899999999999998887753 234455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
+|...++...+........+ ..+...|...|++++|.+.+++..+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAF--YNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHH--HHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55444443333322222111 1244444444444444444444444
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=5.9e-12 Score=117.76 Aligned_cols=279 Identities=11% Similarity=-0.049 Sum_probs=194.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTY 229 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~ 229 (513)
.+......+...|++++|...|++..+..+.+ ...|..+...|...|++++|++.|++.... .+..| ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34455667788999999999999998876555 467888999999999999999999886532 11112 24578
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccC--------------------HHHHHHHH
Q 010313 230 NTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWM--------------------WGKVEEIY 284 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 284 (513)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999988764211 122 3478888889999999 99999888
Q ss_pred HHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010313 285 QMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 285 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
++.... +-.+ ...++..+...+...|++++|.+.+++..+... +.++....
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~--------- 222 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK---------------EFGDKAAE--------- 222 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------HHTCHHHH---------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------------hcCChHHH---------
Confidence 876531 1111 245777888888889999999988887664210 00000000
Q ss_pred CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---
Q 010313 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--- 432 (513)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 432 (513)
...+..+...+...|++++|.+.+++.... +.......++..+...+...|++++|.+.++++.+.
T Consensus 223 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 223 -------RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 001123566666777777777777765542 111122456777888888999999999998877543
Q ss_pred -CCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010313 433 -GWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 433 -~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+.. ....++..+...|.+.|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 12446778888999999999999999988764
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=2e-11 Score=116.88 Aligned_cols=235 Identities=6% Similarity=-0.099 Sum_probs=138.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CC-CHHHHHH
Q 010313 233 ISVFGRLLLVDHMEAAFQEIKDSN-LSPN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MP-DTNTYLL 301 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p-~~~t~~~ 301 (513)
...+...|++++|...|++..+.- -.+| ..+|..+...|...|++++|++.+++..+. +- .+ ...++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 344455566666666665555320 0011 244555555555566666666555554431 10 01 1234455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010313 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 381 (513)
+...|...|++++|.+.+++..+. .............+..+...|...|
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSM-------------------------------AEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH-------------------------------HHHcCChHHHHHHHHHHHHHHHHCC
Confidence 555555555555555555544332 1111111111111224677777888
Q ss_pred CHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcccHhhHHHHHHHHHhcCC
Q 010313 382 CLEEMEKSINDAFEH----KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~ 453 (513)
++++|++.+++.++. +..+....++..+...|...|++++|.+.+++..+. +-......+..+...|...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 888888888776652 222445667888889999999999999998877543 222223335667777888888
Q ss_pred ---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010313 454 ---VEEMESVLKEMENYKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 454 ---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+++|..++++. +..+ ....+..+...|...|++++|.+.+++..+
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777765 2223 344677888999999999999999998754
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.6e-12 Score=120.50 Aligned_cols=239 Identities=11% Similarity=0.019 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CC
Q 010313 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PV 292 (513)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 292 (513)
..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|.+.|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887752 12224566777777888888888888888777652 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010313 293 MP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV------DGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364 (513)
Q Consensus 293 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (513)
.| ...++..+...+...|++++|.+.++++.+.. ..+ ....+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------------------- 157 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN----------------------------- 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-----------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH-----------------------------
Confidence 12 35667777777777888888877777765431 001 111122
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----
Q 010313 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG----- 433 (513)
Q Consensus 365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----- 433 (513)
.+...+...|++++|.+.+++.... +..+....++..+...|...|++++|.++++++.+..
T Consensus 158 -------~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 158 -------NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp -------HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 3556666677777777777666553 2244455567778888888888888888888776421
Q ss_pred --CcccHh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010313 434 --WRLCRS-------LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 434 --~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
..+... .+..+...+...+.+.+|...++...... +.+..+|..+..+|.+.|++++|.+++++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111111 12222333344555555666666665433 34567788899999999999999999998764
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=4.6e-11 Score=101.34 Aligned_cols=167 Identities=16% Similarity=0.019 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+..+|..+...|.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|+..+...... .+-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 67889999999999999999999999999987779999999999999999999999999999875 3456778888889
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
.+...++++.|...+++..+... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999887644 367889999999999999999999999988743 2357889999999999999999
Q ss_pred HHHHHHHHHhc
Q 010313 315 MEKIYELVKHH 325 (513)
Q Consensus 315 a~~~~~~~~~~ 325 (513)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998874
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=4.2e-11 Score=117.06 Aligned_cols=305 Identities=12% Similarity=-0.011 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010313 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK---CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (513)
+.++|.+.|++..+.|.++ .+..|...|...+..++ +.+.+...... | +...+..|...|...+.++.+..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCHH
Confidence 5566666666666544332 55555555555544332 33333333322 2 23344555555555554433333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHH
Q 010313 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAW---MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS----GNLPRMEKIYE 320 (513)
Q Consensus 248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~ 320 (513)
....+.+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|... +++++|.+.|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3222221111112225566666666666 6666666666666655 23444444555555433 46666666666
Q ss_pred HHHhccCCCcHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC-----CHHHHHHHHHH
Q 010313 321 LVKHHVDGKEFPLIRAMICA-Y--SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED-----CLEEMEKSIND 392 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~ 392 (513)
... .| +...+..|... | ...++.++|.+.++...+. +...-.+ .+...|. .| ++++|.+.|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g~~~A~~-~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---DQPRAEL-LLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---TCHHHHH-HHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---CCHHHHH-HHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 655 22 33444444444 2 3345555444443333222 2111111 2333443 33 66666666665
Q ss_pred HHhcCCCCchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010313 393 AFEHKTSVTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEM 464 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 464 (513)
.. .+ +...+..|...|.. ..+.++|.++|++..+.|. ......|...|.. ..+.++|...|+..
T Consensus 313 Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 313 AV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred Hh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 54 21 22334444444444 2366666666666665552 2333344444442 34666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010313 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.+.|. ++.......+......++.++|.++.++.+
T Consensus 385 ~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 385 KAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 66652 222222222222233334455555555443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.1e-09 Score=101.34 Aligned_cols=177 Identities=9% Similarity=-0.004 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010313 173 DLAADLFAEAANKHLKTIGTYNALLGAYMY-------NGLS-------DKCQSLFRDLKKEANISP-SIVTYNTLISVFG 237 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 237 (513)
++|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+ .+.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHHH
Confidence 678888888888766688888888887763 4775 889999988885 2345 4567888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-hcCChHH
Q 010313 238 RLLLVDHMEAAFQEIKDSNLSPN-VF-TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPR 314 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~ 314 (513)
+.|++++|..+|++..+. .|+ .. +|..+...+.+.|++++|.++|++..+.+ ..+...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 889999999999988874 343 33 78888888888888999999888888743 223444443333322 2688888
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010313 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
|.++|+...+.. +.+...|..++..+.+.|++++|..+++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888877652 2345555555555555554444444433
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=4.7e-11 Score=117.46 Aligned_cols=207 Identities=10% Similarity=-0.043 Sum_probs=173.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH-HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010313 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
.+.++..++..... .+.+...+..+...+...|++ ++|.+.|++..+..+.+...|..+...|...|++++|++.
T Consensus 84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555666654432 345888999999999999999 9999999999988777899999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------c
Q 010313 213 FRDLKKEANISPSIVTYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA--------W 275 (513)
Q Consensus 213 ~~~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g 275 (513)
|++..+. .|+...+..+...+... |++++|+..|++..+... -+...|..+..+|... |
T Consensus 160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999853 68888999999999999 999999999999998654 3688899999999998 9
Q ss_pred CHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010313 276 MWGKVEEIYQMMKAGPVMP----DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
++++|++.|++..+. .| +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.
T Consensus 236 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 236 ISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 34 78899999999999999999999999988863 345667777777777777555443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=9.4e-10 Score=101.76 Aligned_cols=236 Identities=8% Similarity=0.022 Sum_probs=152.0
Q ss_pred CHhHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHH
Q 010313 189 TIGTYNALLGAYMYN----GLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------LLLV-------DHME 246 (513)
Q Consensus 189 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~ 246 (513)
+...|...+...-+. ++. ++|..+|++.... .+-+...|..++..+.. .|++ ++|.
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 455677777654443 232 6777888887764 24566677777776653 4665 7778
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010313 247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TN-TYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.+|++..+. .. -+...|..+...+.+.|++++|.++|++..+ +.|+ .. .|..+...+.+.|++++|..+|++..
T Consensus 85 ~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 85 NIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888777762 22 2456777777777777888888888887776 3443 22 67777777777777777777777776
Q ss_pred hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010313 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 403 (513)
+... .+...|...... .+...|++++|.++|++.++.. |.+.
T Consensus 162 ~~~p-~~~~~~~~~a~~-----------------------------------~~~~~~~~~~A~~~~~~al~~~--p~~~ 203 (308)
T 2ond_A 162 EDAR-TRHHVYVTAALM-----------------------------------EYYCSKDKSVAFKIFELGLKKY--GDIP 203 (308)
T ss_dssp TSTT-CCTHHHHHHHHH-----------------------------------HHHTSCCHHHHHHHHHHHHHHH--TTCH
T ss_pred hcCC-CCHHHHHHHHHH-----------------------------------HHHHcCCHHHHHHHHHHHHHhC--CCcH
Confidence 6432 222222111100 0112477777777777776632 3455
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010313 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-WRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
..|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777788888888888777652 343 3556777777777778888888887777654
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.2e-11 Score=112.63 Aligned_cols=242 Identities=15% Similarity=0.066 Sum_probs=165.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Q 010313 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA--- 220 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 220 (513)
.+.+..++..+...+...|++++|..+|+++.+. ..+ ...++..+...|...|++++|++.|++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999999999998773 233 67788999999999999999999999887531
Q ss_pred --C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010313 221 --N-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS------NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 221 --g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+ ......++..+...+...|++++|...|++..+. +-.| ...++..+...+...|++++|+++|+++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1223567888999999999999999999988764 2222 3466888889999999999999999998763
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------CCCcH-H------HHHHHHHHHHhcCChhH
Q 010313 291 ------PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-------DGKEF-P------LIRAMICAYSKCSVTDR 349 (513)
Q Consensus 291 ------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-~------~~~~li~~~~~~g~~~~ 349 (513)
+-.| ...++..+...+...|++++|.+.++++.+.. ..+.. . .+..+...+...+.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 2123 25678889999999999999999999887531 11111 1 11122222222233332
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
+...++...... ......+..+...|...|++++|.+.|++.++
T Consensus 263 a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 263 YGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222222221111 11122233688999999999999999998775
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=5.2e-11 Score=116.42 Aligned_cols=340 Identities=9% Similarity=-0.025 Sum_probs=218.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH---HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV---DLAADLFAEAANKHLKTIGTYNALLGAYMYNG--- 204 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--- 204 (513)
.++.+.|.+.|+...+.+ +...+..|...|...|+. ++|.++|++..+. +...+..|...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT------CCTGGGTCC-------------------------------CHHHHHHHHHTC--CC
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCC
Confidence 468889999999887764 445566677777778888 8999999998865 6667777777566655
Q ss_pred --ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010313 205 --LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH---MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 205 --~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
+.++|++.|++.... |. ++ .+..|...|...+..+. +.+.+....+.| +...+..|...|...+.+++
T Consensus 87 ~~~~~~A~~~~~~Aa~~-g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFAN-GE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHT-TC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 788999999999874 42 23 67777777777665443 455555555444 34566777788888775555
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc----CChhHHHH
Q 010313 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC----SVTDRIKK 352 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~ 352 (513)
+......+.+.-...+...+..|...|...| +.++|.+.|+...+.|. ++...+..|...|... ++.++|.+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4444333322111223338888999999999 89999999999998864 4555556677777654 56665555
Q ss_pred HHHHHHhCCCCCcccchHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-----cHHHHHH
Q 010313 353 IEALMRLIPEKEYRPWLNVLLIRV-Y--AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-----AVDKLAN 424 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~ 424 (513)
.++.. . ++...-.+ .+... + ...+++++|.+.|++..+.+ +...+..+...|. .| ++++|.+
T Consensus 239 ~~~~a---a-~g~~~a~~-~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 239 LLEKI---A-PGYPASWV-SLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHH---G-GGSTHHHH-HHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHH---c-CCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 54443 3 33333223 35554 3 46899999999999998865 3445666777776 55 9999999
Q ss_pred HHHHHHhcCCcccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 010313 425 FVKRAESAGWRLCRSLYHSKMVMYAS----QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVL 496 (513)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 496 (513)
+|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|..+|
T Consensus 309 ~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999887 44 55666677777765 4599999999999998874 3355666667764 56899999999
Q ss_pred HHHHHCCC
Q 010313 497 GLMCKNGY 504 (513)
Q Consensus 497 ~~m~~~g~ 504 (513)
++..+.|.
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 99988875
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=1.4e-10 Score=111.11 Aligned_cols=233 Identities=10% Similarity=0.015 Sum_probs=118.1
Q ss_pred HHHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 010313 163 IKFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNT 231 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~ 231 (513)
...+...|++++|.+.|++..+.- .+ ...+|..+...|...|++++|+..+++......-.++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 334455666666666666655421 11 2345666666666666666666666655432111111 235555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHH
Q 010313 232 LISVFGRLLLVDHMEAAFQEIKDSNLS-PN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLL 301 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~ 301 (513)
+...|...|++++|+..|++..+.... ++ ..+|+.+...|...|++++|++.|++..+. +. .....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 666666666666666666655532100 11 134555666666666666666666655441 22 222455566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010313 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 381 (513)
+...+.+.|++++|.+.+++..+.. .....+..... ...+...+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~-~~~l~~~~~~~~ 317 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYS-------------------------------QKAGDVIYLSE-FEFLKSLYLSGP 317 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHH-HHHHHHHHTSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHH-HHHHHHHHhCCC
Confidence 6666666666666666665544321 00001111111 112444444555
Q ss_pred C---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010313 382 C---LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 382 ~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 430 (513)
+ +++|+.++++. +..+.....+..+...|...|++++|.+.+++..
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5 45555554443 2222233455566666777777777777776654
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=6e-11 Score=116.74 Aligned_cols=148 Identities=10% Similarity=-0.022 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010313 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS-DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (513)
++++.+.+++.......+...|..+...|...|++ ++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444333566666666666666666 6666666666543 12235566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------CChH
Q 010313 251 EIKDSNLSPNVFTYNYLIAGYMTA---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--------GNLP 313 (513)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~ 313 (513)
+..+.. |+...|..+...|... |++++|++.|++..+.. .-+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 665542 4455555566666555 56666666666555422 11345555555555555 5555
Q ss_pred HHHHHHHHHHh
Q 010313 314 RMEKIYELVKH 324 (513)
Q Consensus 314 ~a~~~~~~~~~ 324 (513)
+|.+.|++..+
T Consensus 239 ~A~~~~~~al~ 249 (474)
T 4abn_A 239 QALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.7e-10 Score=96.32 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...|..+...+...|++++|.+.|+++.+..+.+...+..+...+...|++++|.+.|+++.+. .+.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 3456667777888888888888888887765557788888888888888888888888888764 24467788888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010313 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888876543 367778888888888888888888888877643 23567788888888888888888
Q ss_pred HHHHHHHHhc
Q 010313 316 EKIYELVKHH 325 (513)
Q Consensus 316 ~~~~~~~~~~ 325 (513)
.+.++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877654
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=3.3e-10 Score=96.03 Aligned_cols=166 Identities=11% Similarity=0.034 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010313 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374 (513)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 374 (513)
+...|..+...|...|++++|++.|++..+.. +.+...+..+..+|.+.|+++++...+.............+. .+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY--ILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH--HHH
Confidence 56677888888888888888888888877753 345666666666666666666665555544444333332221 344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH
Q 010313 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 454 (513)
..+...++++.|.+.+.+..... |.+...+..+...|...|++++|++.+++..+... -+...|..+..+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCH
Confidence 45555555666665555555422 23344455555555555555555555555544332 1344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 010313 455 EEMESVLKEMEN 466 (513)
Q Consensus 455 ~~A~~~~~~m~~ 466 (513)
++|.+.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=6.9e-10 Score=105.97 Aligned_cols=315 Identities=8% Similarity=-0.026 Sum_probs=169.1
Q ss_pred CCCCHHHHHHHHHHh--cccCCHHHHHHHHHHHHhcc--CC---CHhHHHHHHHH--HHHcCChHHHH---------HHH
Q 010313 152 TPMTKEEYTKGIKFA--GRINNVDLAADLFAEAANKH--LK---TIGTYNALLGA--YMYNGLSDKCQ---------SLF 213 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~--~~---~~~~~~~li~~--~~~~g~~~~A~---------~~~ 213 (513)
+.|+..+-+.|-.+| .+.+++++|.++++++.... .. +...|-.++.. ....+..+.+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 445666667777777 67788888888888765532 11 23333444332 11122333333 444
Q ss_pred HHHHHhCCCCCCH-H---HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHccCHHHHHHHH
Q 010313 214 RDLKKEANISPSI-V---TYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN----VFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 214 ~~m~~~~g~~p~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
+.+... ....+. . .|......+...|++++|+..|++..+... .++ ..++..+...|...|++++|...+
T Consensus 86 ~~i~~~-~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 86 ETIETP-QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcc-CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 444321 000010 0 112233334555666666666665553210 012 234555555556666666666655
Q ss_pred HHHHcC----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010313 285 QMMKAG----P-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358 (513)
Q Consensus 285 ~~m~~~----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 358 (513)
++..+. + ..+ ...+++.+...|...|++++|.+.+++..+. ..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-------------------------------~~ 213 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL-------------------------------AM 213 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------------------HH
Confidence 554431 1 011 1334555555555566666665555554331 11
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-
Q 010313 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW- 434 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~- 434 (513)
...........+..+...|...|++++|++.+++.+.. ...+....++..+...|.+.|++++|.+.+++..+...
T Consensus 214 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 11111111111223666777778888888887776651 12233456677888888888999999988888765321
Q ss_pred ---cccHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010313 435 ---RLCRSLYHSKMVMYASQRR---VEEMESVLKEMENYKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 435 ---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
......+..+...|...++ +++|..++++. +..+ ....+..+...|...|++++|.+.|++..+
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1123345555566667777 77777777662 2222 234566788889999999999988887653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=3.2e-09 Score=101.04 Aligned_cols=303 Identities=9% Similarity=-0.022 Sum_probs=202.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----
Q 010313 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPN---- 260 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 260 (513)
..+......+...|++++|...+++..... +++ . ..++.+...+...|++++|...+++..+... ..+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 344555566778999999999999988642 222 2 2566777888899999999999998775211 112
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC----C
Q 010313 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVM--PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG----K 329 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~ 329 (513)
..+++.+...+...|++++|.+.+++.... +.. |. ...+..+...+...|++++|...+++..+.... .
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 234667778889999999999999987652 222 32 456677888899999999999999988764322 1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcc-cchHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ch
Q 010313 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEKEYR-PWLNV---LLIRVYAKEDCLEEMEKSINDAFEHKTSV--TT 402 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 402 (513)
....+..+...+...|++++|...++..... ...+.. .+... ..+..+...|++++|...+++........ ..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2456777888888889988888777665544 222222 22111 12234668899999999888876543221 11
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010313 403 VRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCR-SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
...+..+...+...|++++|.+.++.... .|..++. ..+..+..++...|+.++|...+++.....- . .
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~ 326 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----T 326 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----c
Confidence 23456677888888999999888887643 2322232 3556667778888999999998888876421 0 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
-.+..+...| +....+++.+....
T Consensus 327 g~~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 327 GFISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp CCCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred cHHHHHHHcc--HHHHHHHHHHHhCC
Confidence 1224444444 56666777766543
No 76
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=6.1e-08 Score=98.22 Aligned_cols=376 Identities=8% Similarity=0.036 Sum_probs=217.9
Q ss_pred chhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccC--CCHh
Q 010313 119 NGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHL--KTIG 191 (513)
Q Consensus 119 ~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~--~~~~ 191 (513)
|...|..++..+. +..+.+..+|+.+... +|.+...|...+..-.+.|+ ++.+.++|++.....+ +++.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 6667777777662 4566677777777654 56677777777777777777 8888888888777653 5777
Q ss_pred HHHHHHHHHHHcCCh--------HHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHH
Q 010313 192 TYNALLGAYMYNGLS--------DKCQSLFRDLKKEANI-SPS-IVTYNTLISVFGR---------LLLVDHMEAAFQEI 252 (513)
Q Consensus 192 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m 252 (513)
.|..-+....+.++. +.+.++|+......|. .++ ...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 777777665554443 3344677766655565 443 4566666654432 23456677777777
Q ss_pred HHCCCCCCHHHHHH---HHHHH----------HHccCHHHHHHH------------------------------------
Q 010313 253 KDSNLSPNVFTYNY---LIAGY----------MTAWMWGKVEEI------------------------------------ 283 (513)
Q Consensus 253 ~~~g~~p~~~~~~~---li~~~----------~~~g~~~~a~~~------------------------------------ 283 (513)
+......-..+|.. +-..+ -...+++.|...
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 64311111122211 11110 000112222222
Q ss_pred -------------------------------HHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhccCCCcH
Q 010313 284 -------------------------------YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME-KIYELVKHHVDGKEF 331 (513)
Q Consensus 284 -------------------------------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~ 331 (513)
|++.... +.-+...|...+.-+...|+.++|. ++|++.... .+.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 3332221 1112334444444455667777775 888777764 44566
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------CC----------cccchHHHHHHHHHhcCCHHHHHHHHH
Q 010313 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPE----------KE----------YRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
..|-..+...-+.|++++|.++++.+..... +. ..+..+...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6677777777778888877777665543210 10 011112245555566777888888888
Q ss_pred HHHhc-CCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010313 392 DAFEH-KTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469 (513)
Q Consensus 392 ~~~~~-~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 469 (513)
+..+. +..... +|...+..-.+. ++.+.|.++|+...+. +.-+...+...++.....|+.+.|..+|++......
T Consensus 459 ~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 459 KCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 87765 222222 232222222233 4578888888877654 223455566777777778888888888888876542
Q ss_pred CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 470 DC--SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 470 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
.+ ....|...+..-.+.|+.+.+.++.++|.+.-
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11 34567777777778888888888888887653
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=2.4e-10 Score=117.12 Aligned_cols=167 Identities=10% Similarity=0.058 Sum_probs=149.2
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010313 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
|-+..+|+.|..+|.+.|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|++.|++..+. -+-+...|+.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3467889999999999999999999999999987778999999999999999999999999999875 13357899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010313 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGN 311 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 311 (513)
..++.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+ +.|+ ...|..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999986542 688999999999999999999999999988 3454 8899999999999999
Q ss_pred hHHHHHHHHHHHh
Q 010313 312 LPRMEKIYELVKH 324 (513)
Q Consensus 312 ~~~a~~~~~~~~~ 324 (513)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=1.4e-08 Score=96.49 Aligned_cols=302 Identities=10% Similarity=-0.024 Sum_probs=204.7
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCC-CH----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHH
Q 010313 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TI----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTY 229 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~ 229 (513)
+......+...|++++|...+++....... +. .+++.+...+...|++++|.+.+++......-..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455667899999999999998775543 32 256777788999999999999999876531112233 346
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC----CCCHHH
Q 010313 230 NTLISVFGRLLLVDHMEAAFQEIKDS----NLS--P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV----MPDTNT 298 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t 298 (513)
+.+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++.....- .....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 77888899999999999999988752 221 2 245667788889999999999999999775321 112467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCCccc--chH
Q 010313 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIR----AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLN 370 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 370 (513)
+..+...+...|++++|...+++..+....++ ..... ..+..+...|+++.+...++............ ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 88889999999999999999998876422211 12111 23345778998887766654443322211111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010313 371 VLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 446 (513)
..+...+...|++++|...+++..... ..+.. ..++..+..++...|+.++|...+++....... . -.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~--~----g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR--T----GFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--H----CCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--c----cHHH
Confidence 346788889999999999998876531 11112 235666778889999999999999988653211 1 1223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 010313 447 MYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
.+...| +....+++.+...+
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHcc--HHHHHHHHHHHhCC
Confidence 344444 56667777776654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=2e-09 Score=102.79 Aligned_cols=196 Identities=10% Similarity=-0.013 Sum_probs=133.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHhcc--CC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 010313 163 IKFAGRINNVDLAADLFAEAANKH--LK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-----IVTYNT 231 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~--~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~ 231 (513)
...+...|++++|.+.|++..+.. .+ ...++..+...|...|++++|+..+++......-.++ ..+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 344568899999999999877542 12 3567888888999999999999998887643111122 457788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010313 232 LISVFGRLLLVDHMEAAFQEIKDS----NLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL 301 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 301 (513)
+..+|...|++++|++.|++..+. +-.+ ...+++.+..+|...|++++|++.|++..+ .. .....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888899999999999988887652 1111 235677788888888999999988888765 32 223677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010313 302 LLRGYAHSGNLPRMEKIYELVKHHVD----GKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
+...+.+.|++++|...+++..+... +.....+..+...|...++.+...+++..+.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 88888888999999888888766321 12233344444455555553334444444444
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=9.7e-10 Score=99.83 Aligned_cols=230 Identities=10% Similarity=-0.001 Sum_probs=151.3
Q ss_pred HHccCHHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCCC-cHHHHHHH
Q 010313 272 MTAWMWGKVEEIYQMMKA-------GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH------VDGK-EFPLIRAM 337 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 337 (513)
...|++++|+.+|++..+ ........++..+...+...|++++|...++++.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777666544 222224678889999999999999999999998764 2222 45678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHH
Q 010313 338 ICAYSKCSVTDRIKKIEALMRLIP------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRI 405 (513)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 405 (513)
...|...|++++|.+.++...... ........+..+...|...|++++|.+.+++.+.. +..+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999998887766555442 11111222335788888999999999999988775 234555677
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCcccH-hhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCC
Q 010313 406 MRCIVSSYFRCNAVDKLANFVKRAESA-------GWRLCR-SLYHSKMVMYASQRR------VEEMESVLKEMENYKIDC 471 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p 471 (513)
+..+...|...|++++|.++++++.+. ...+.. ..|..+...+...+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999987643 112222 223333333332222 2222222222211 1122
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
...++..+...|...|++++|.+++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888999999999999999999988753
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=2.4e-09 Score=90.33 Aligned_cols=164 Identities=10% Similarity=-0.025 Sum_probs=127.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|++.|+++.+. .+.+...+..+...+...|++++|...++++.+... .+...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 456777888888999999999999988753 345678888888999999999999999999887643 36788888888
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH
Q 010313 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 349 (513)
.+...|++++|.+.++++.+.. ..+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999887643 3367788888888899999999999998887763 3455666666677777776666
Q ss_pred HHHHHHHHH
Q 010313 350 IKKIEALMR 358 (513)
Q Consensus 350 a~~~~~~~~ 358 (513)
|.+.++...
T Consensus 163 A~~~~~~~~ 171 (186)
T 3as5_A 163 ALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=2e-09 Score=110.33 Aligned_cols=165 Identities=11% Similarity=-0.028 Sum_probs=145.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+..+|+.|...|.+.|++++|++.|++..+. -+-+..+|+.+..++.+.|++++|++.|++..+.... +...|+.+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7889999999999999999999999999875 2345789999999999999999999999999986532 688999999
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
.+|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++..+.. +.+...+..+..+|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999873 45 48899999999999999999999999999863 44678899999999999999
Q ss_pred hHHHHHHHHHHh
Q 010313 348 DRIKKIEALMRL 359 (513)
Q Consensus 348 ~~a~~~~~~~~~ 359 (513)
++|.+.++...+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887665544
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=1.5e-09 Score=98.55 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=154.4
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC------CCCC-CHHHHHHH
Q 010313 237 GRLLLVDHMEAAFQEIKDS-------NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG------PVMP-DTNTYLLL 302 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~l 302 (513)
...|+++.|+..|++..+. .......++..+...|...|++++|++.|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776641 22224678899999999999999999999998753 2223 36788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcc-------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC--CCcccch
Q 010313 303 LRGYAHSGNLPRMEKIYELVKHHV-------DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI----PE--KEYRPWL 369 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~ 369 (513)
...+...|++++|.+.+++..+.. .+.....+..+...|...|++++|...++...+. .. .......
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987641 1234667889999999999999998887666554 11 1111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhcCCcc
Q 010313 370 NVLLIRVYAKEDCLEEMEKSINDAFEH-------KTSVTTVRIMRCIVSSYFRCNA------VDKLANFVKRAESAGWRL 436 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~p 436 (513)
+..+...|...|++++|.+.+++..+. ...+.....+..+...+...+. +..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 335888999999999999999998763 1122222233333333333222 2222222222111 1123
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 437 CRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
....+..+...|...|++++|..+|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456688899999999999999999998775
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=9.4e-09 Score=90.31 Aligned_cols=198 Identities=10% Similarity=-0.062 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
.|+..+......+.+.|++++|.+.|++..+..+ ++...+..+..++...|++++|++.|++..+. -+-+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3567777788888888888888888888888776 56677777888888888888888888888763 12345677888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC---HHHHHHH
Q 010313 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNV-------FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD---TNTYLLL 302 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~l 302 (513)
..++...|++++|+..|++..+.... +. ..|..+...+...|++++|++.|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 88888888888888888888775322 34 45777777788888888888888888773 454 4566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010313 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (513)
..++...| ..+++.+...+. .+...|..... ...+.+++|...++...++.+.+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCC
Confidence 66665444 333444444321 22333333222 22233455555555555544443
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=4.3e-07 Score=92.06 Aligned_cols=348 Identities=9% Similarity=0.037 Sum_probs=212.7
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCCCHHH
Q 010313 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL---SDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
.+.|...|..++..+.+.+.++.+..+|+.+...-+.....|..-+..-.+.|+ ++.+.++|++........|++..
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 456999999999999999999999999999998866688899999999888898 99999999999863111489999
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------HccCHHHHHHHHHHHH
Q 010313 229 YNTLISVFGRLLLV--------DHMEAAFQEIKD-SNL-SP-NVFTYNYLIAGYM---------TAWMWGKVEEIYQMMK 288 (513)
Q Consensus 229 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~ 288 (513)
|..-+....+.++. +.+.++|+.... .|. .+ +...|...+.... ..++++.+.++|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877766654 334578887664 466 55 4578888876543 2345778889999888
Q ss_pred cCCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHH----------------------------------
Q 010313 289 AGPVMPDTNTYL---LLLRGYA----------HSGNLPRMEKIYEL---------------------------------- 321 (513)
Q Consensus 289 ~~g~~p~~~t~~---~ll~~~~----------~~g~~~~a~~~~~~---------------------------------- 321 (513)
......-..+|. .+...+. ...+++.|...+.+
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 632111122221 1111100 00112222222222
Q ss_pred ---------------------------------HHhccCCCcHHHHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCccc
Q 010313 322 ---------------------------------VKHHVDGKEFPLIRAMICAYSKCSVTDRIK-KIEALMRLIPEKEYRP 367 (513)
Q Consensus 322 ---------------------------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~ 367 (513)
.... .+.....|-..+..+...|+.+.|. ++++......+....-
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 2221 1122233333333344445555553 5544443333333222
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCc-----------hHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010313 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK---------TSVT-----------TVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
|. ..+...-..|++++|.++|++++... ..|+ ...+|...+....+.|+.+.|..+|.
T Consensus 381 wl--~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 381 AF--SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HH--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32 35555666778888888887776531 0121 23356666776677778888888888
Q ss_pred HHHhcCCcccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 428 RAESAGWRLCRSLYHSKMVMYASQ-RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 428 ~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
++.+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|...++.....|+.+.|..+|++.....
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 776541111223333332223333 3478888888877765 34456666677777777888888888888776654
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=5.1e-08 Score=85.54 Aligned_cols=213 Identities=8% Similarity=-0.026 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHH
Q 010313 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLL 302 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l 302 (513)
.|...+......+...|++++|+..|++..+....++...+..+..++.+.|++++|++.|++..+. .| +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556677777777777777777777777776554356666666777788888888888888887763 34 36677778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010313 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
...+...|++++|.+.+++..+.. +.+...+..+...+. .+...+...|+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~-----------------------------~~g~~~~~~~~ 132 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYL-----------------------------KEGQKFQQAGN 132 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-----------------------------HHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH-----------------------------HHhHHHHHhcc
Confidence 888888888888888888877753 223333232222222 24555667788
Q ss_pred HHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHH
Q 010313 383 LEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 460 (513)
+++|++.|++.++. .|. +...+..+...|...|+ .+++++...+. .+...|.... ....+.+++|...
T Consensus 133 ~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~ 202 (228)
T 4i17_A 133 IEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDY 202 (228)
T ss_dssp HHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHH
Confidence 88888888887773 454 45666667666654443 34444444332 1233343332 2345668888888
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 010313 461 LKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 461 ~~~m~~~~~~p~~~~~~~l 479 (513)
|++..+.. +-+..+...+
T Consensus 203 ~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 203 LGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHC-TTCHHHHHHH
T ss_pred HHHHhhcC-CCCHHHHHHH
Confidence 88888754 3334444333
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=6.9e-09 Score=82.27 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=72.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.|..+...+...|++++|.++|+++.+.+..+...|..+...+...|++++|...|+++... .+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 34455555566666666666666665554445555666666666666666666666666543 1334455555555666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010313 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
..|++++|...++++.+... .+..++..+...+.+.|++++|.+.|+++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665554322 2345555555555555555555555555543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=2.4e-08 Score=91.40 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010313 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRL--L-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (513)
.+|.+++.+..+. +++....| .+ + +. + ++++|...|++. ...|...|++++|.+.
T Consensus 2 ~~a~~~~~~a~k~--~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 2 SDPVELLKRAEKK--GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CCHHHHHHHHHHH--SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHH
T ss_pred CcHHHHHHHHHHH--hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 3566777777664 33322222 22 1 22 2 477777777766 3356677888888888
Q ss_pred HHHHHcC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010313 284 YQMMKAG----PVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 284 ~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
|++..+. |-.++ ..+|+.+..+|...|++++|...+++..+
T Consensus 60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8776542 21222 56788888888888999988888887665
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=2.8e-08 Score=78.62 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010313 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
..|..+...+...|++++|+.+|+++.+. .+.+...+..+...+...|++++|...|+++.+.+. .+...|..+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence 35778888899999999999999998865 245677888888999999999999999999887653 367788888889
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010313 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+.+.|++++|.++++++.+.. ..+..++..+...+...|++++|...++++.+.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999887743 235778888889999999999999999888764
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=4.5e-08 Score=87.94 Aligned_cols=171 Identities=13% Similarity=0.032 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHH
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTY 229 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~ 229 (513)
.+...+-.+...+.+.|++++|.+.|+++.+..+.+ ...+..+..+|.+.|++++|+..|++..+...-.|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 366677777788888999999999999988876545 678888888899999999999999998875211122 4567
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHH
Q 010313 230 NTLISVFGR--------LLLVDHMEAAFQEIKDSNLSPNVFTY-----------------NYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 230 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~ 284 (513)
..+..++.. .|++++|+..|++..+.... +...+ ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 777788888 88999999999988875322 22222 44566778888888888888
Q ss_pred HHHHcCCCC-C-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 010313 285 QMMKAGPVM-P-DTNTYLLLLRGYAHS----------GNLPRMEKIYELVKHH 325 (513)
Q Consensus 285 ~~m~~~g~~-p-~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 325 (513)
+++.+..-. + ....+..+..+|... |++++|...|+.+.+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 887763211 1 245666777777755 7778888888887775
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=4.4e-08 Score=89.63 Aligned_cols=162 Identities=9% Similarity=-0.048 Sum_probs=103.0
Q ss_pred HHHhcccCCHHHHHHHHHHHHhc----cCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 010313 163 IKFAGRINNVDLAADLFAEAANK----HLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTL 232 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~l 232 (513)
...|...|++++|.+.|++..+. |-+ ...+|+.+...|.+.|++++|+..|++......-..+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888888776543 211 2467778888888888888888888776542100111 3466777
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH------HHHH
Q 010313 233 ISVFGRL-LLVDHMEAAFQEIKDSNLS-PN----VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT------NTYL 300 (513)
Q Consensus 233 i~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~ 300 (513)
...|... |++++|+..|++..+.... .+ ..+|+.+...+.+.|++++|+..|++..+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7777775 7777777777776642110 01 345667777777777777777777777663322111 1456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 010313 301 LLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.+..++...|++++|...|++..+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666677777777777777777655
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=6.3e-08 Score=83.63 Aligned_cols=172 Identities=12% Similarity=0.015 Sum_probs=126.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHhC
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA----------------LLGAYMYNGLSDKCQSLFRDLKKEA 220 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~ 220 (513)
..+-.....+.+.|++++|...|++..+..+.+...|.. +...|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 334445556678899999999999988876556677777 889999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHH
Q 010313 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t 298 (513)
-+-+...|..+..++...|++++|+..|++..+... -+..+|..+...|...|+ .+.+...++.... ..|....
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 244678899999999999999999999999988654 267888888888776654 3455666655543 2233334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHH
Q 010313 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (513)
+.....++...|++++|...|++..+. .|+.....
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 455566677788999999999998875 35544333
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=1.6e-08 Score=84.92 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=123.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-F 236 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~ 236 (513)
.+..+...+.+.|++++|...|++..+..+.+...|..+...+...|++++|+..|++.... .|+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 45566677888999999999999988876668889999999999999999999999988754 3455443332222 2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010313 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 315 (513)
...+....|+..|++..+... -+...+..+...+...|++++|...|+++.+..-.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 232334457888888887543 257888888899999999999999999988754222 356788888999999999999
Q ss_pred HHHHHHHHh
Q 010313 316 EKIYELVKH 324 (513)
Q Consensus 316 ~~~~~~~~~ 324 (513)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876554
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=2.6e-08 Score=102.47 Aligned_cols=189 Identities=12% Similarity=-0.038 Sum_probs=151.5
Q ss_pred cccCCHHHHHHHHHHHH--------hccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010313 167 GRINNVDLAADLFAEAA--------NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
...|++++|++.|++.. +..+.+...|..+...+...|++++|++.|++..+. -+-+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 78899999999999998 554557889999999999999999999999999875 24567899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010313 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
.|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.. .-+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999886532 67888999999999999999 99999988743 22578899999999999999999999
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHhCC
Q 010313 319 YELVKHHVDGKEFPLIRAMICAYSKCSV-----TDRIKKIEALMRLIP 361 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~ 361 (513)
|++..+.. +.+...+..+..++...+. .+...++.+.+....
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99888753 2345667777777766554 345556666666554
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=2.1e-07 Score=83.79 Aligned_cols=144 Identities=15% Similarity=0.012 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010313 175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
|+..|++....+.++..++..+..++...|++++|++++.+.... |- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333223333334444555555555555555544321 11 0133444444555555555555555555554
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HHcc--CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010313 254 DSNLSP-----NVFTYNYLIAGY--MTAW--MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 254 ~~g~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
+. .| +..+...|..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 23 123333333331 1112 455555555555442 1332222333334455555555555554443
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=6.6e-08 Score=88.15 Aligned_cols=167 Identities=10% Similarity=-0.069 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010313 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
+.+...+..+...+.+.|++++|.+.|++..+..+.+...+..+...+.+.|++++|...|++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 4456667777788888899999999999888877778888888888888999999999988888753 4665433332
Q ss_pred H-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcC
Q 010313 233 I-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 233 i-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g 310 (513)
. ..+.+.++.+.|...|++..+... .+...+..+...+...|++++|+..|+++.+..-. .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 336667778888888888877643 36778888888888888888888888888774311 12567888888888888
Q ss_pred ChHHHHHHHHHHH
Q 010313 311 NLPRMEKIYELVK 323 (513)
Q Consensus 311 ~~~~a~~~~~~~~ 323 (513)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887776644
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=2.8e-07 Score=83.06 Aligned_cols=195 Identities=9% Similarity=0.007 Sum_probs=142.3
Q ss_pred CchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC--CCHhHHHH
Q 010313 118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--KTIGTYNA 195 (513)
Q Consensus 118 p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~ 195 (513)
|....+..+...+.+. |...++.+...+ +++..++..+..++...|++++|++++.+....+. .+...+..
T Consensus 69 ~~~~a~~~la~~~~~~---a~~~l~~l~~~~----~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l 141 (310)
T 3mv2_B 69 KLGKVLDLYVQFLDTK---NIEELENLLKDK----QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL 141 (310)
T ss_dssp TTHHHHHHHHHHHTTT---CCHHHHHTTTTS----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---HHHHHHHHHhcC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence 3333444444444322 556665443321 44666667888999999999999999999877775 47889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--Hh--cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010313 196 LLGAYMYNGLSDKCQSLFRDLKKEANISP-----SIVTYNTLISVF--GR--LLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p-----~~~~~~~li~~~--~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
++..+.+.|+.+.|.+.+++|.+. .| +..+...|..++ .. .++.++|..+|+++.+. .|+..+-..
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l 216 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG 216 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH
Confidence 999999999999999999999864 57 355556666553 22 34899999999999865 356445555
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcC-----CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010313 267 LIAGYMTAWMWGKVEEIYQMMKAG-----PV---MP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~~-----g~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
++.++.+.|++++|.+.++.+.+. +- .| |..+...+|......|+ +|.+++.++.+..
T Consensus 217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 666899999999999999987652 11 24 46677677766777787 7889999998863
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=2.4e-06 Score=77.68 Aligned_cols=135 Identities=10% Similarity=-0.016 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHHHhccCCCHhHHHHHHHHH----HHc---
Q 010313 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN--NVDLAADLFAEAANKHLKTIGTYNALLGAY----MYN--- 203 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----~~~--- 203 (513)
..+.|+..++.+.... |-+..+|+.--.++...| ++++++++++.+...++++..+|+.--..+ ...
T Consensus 48 ~s~~aL~~t~~~L~~n----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINEL----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHC----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3344555555444431 224444444444444444 555555555555554444444444443333 333
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010313 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD--HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
+++++++++++.+.+. -+-|-.+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 4455555555555443 1334444444444444444444 455555555444332 444444444433333
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=2.9e-06 Score=77.12 Aligned_cols=152 Identities=12% Similarity=-0.008 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------
Q 010313 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL------ 241 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~------ 241 (513)
+++++++++++.+.+..++|-.+|+.-.-.+.+.|.++ ++++.++++.+. -.-|-..|+.....+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 45555555555555554445555555555555555554 555555555543 13344455544444444443
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010313 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKAGP--VMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
++++++.++++....+. |...|+.+-..+.+.|+..+ +..+.+++.+.+ -..+...+..+...+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 45555555555544332 45555555555555444222 333444433321 012444555555555555555555555
Q ss_pred HHHHHh
Q 010313 319 YELVKH 324 (513)
Q Consensus 319 ~~~~~~ 324 (513)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=2.7e-08 Score=80.93 Aligned_cols=145 Identities=7% Similarity=-0.105 Sum_probs=98.3
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010313 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 241 (513)
|...+...|++++|++.++......+.+...+..+...|.+.|++++|++.|++..+. -+-+..+|..+..++.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3445566778888888888776654335666777888888888888888888888764 23456778888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010313 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPD-TNTYLLLLRGYAHSGN 311 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 311 (513)
+++|+..|++..+.... +..+|..+...|.+.|++++|.+. +++..+ +.|+ ..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 88888888887775432 567777777778888877665554 466655 2343 5566655555555553
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=1.7e-07 Score=81.97 Aligned_cols=191 Identities=12% Similarity=0.005 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN 230 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~ 230 (513)
+...+-.+...+.+.|++++|...|+++.+..+.+ ...+..+..+|.+.|++++|+..|+++.+...-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566677788899999999999888765432 3577778888888999999999999888652111221 2344
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010313 231 TLISVFGR------------------LLLVDHMEAAFQEIKDSNLSPNV-FTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 231 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
.+..++.+ .|++++|...|+++.+.. |+. ..+...... + .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----V------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----H------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----H------HHHHHH----
Confidence 44444443 456666666666666542 221 111111000 0 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 010313 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 365 (513)
......+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.+.|.+.++.+....+.+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 00112445566777777777777777776532111 23566677777777777777777776666554443
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=3.2e-07 Score=82.29 Aligned_cols=189 Identities=10% Similarity=0.001 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-CCC-HHH
Q 010313 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPD-TNT 298 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~t 298 (513)
.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|+..|++..+..- .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677778888888999999999999999876432 3 57788888899999999999999999887421 122 556
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 010313 299 YLLLLRGYAH--------SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370 (513)
Q Consensus 299 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (513)
+..+..++.. .|++++|...|+++.+... .+.....++..... ....+.. .+ +
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~----------~~~~~~~-------~~-~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRE----------LRAKLAR-------KQ-Y 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHH----------HHHHHHH-------HH-H
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHH----------HHHHHHH-------HH-H
Confidence 7777888888 8999999999998887632 22222222211110 0000000 01 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcC
Q 010313 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTS-VTTVRIMRCIVSSYFRC----------NAVDKLANFVKRAESAG 433 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~ 433 (513)
.+...|...|++++|+..|+++++.... +.....+..+..+|... |++++|...++++.+..
T Consensus 153 -~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 -EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 4677788888888888888888775432 22344566677777765 77788888887776543
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=1.1e-07 Score=97.76 Aligned_cols=175 Identities=12% Similarity=-0.032 Sum_probs=144.6
Q ss_pred cCChHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh
Q 010313 131 GSRPRLALEVLNWRRRQ----AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS 206 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 206 (513)
.++++.|++.++...+. .....+.+...+..+..+|.+.|++++|.+.|++..+..+.+...|..+..+|...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 56889999999887610 00113457788999999999999999999999999998877999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010313 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
++|++.|++..+. -+-+...|..+..++.+.|++++ ++.|++..+... -+...|..+..++.+.|++++|++.|++
T Consensus 484 ~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 484 DSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999875 23467889999999999999999 999999998654 3678999999999999999999999999
Q ss_pred HHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010313 287 MKAGPVMPD-TNTYLLLLRGYAHSGN 311 (513)
Q Consensus 287 m~~~g~~p~-~~t~~~ll~~~~~~g~ 311 (513)
..+ +.|+ ...+..+..++...++
T Consensus 560 al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 560 VPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp SCT--TSTTHHHHHHHHHHHTC----
T ss_pred hcc--cCcccHHHHHHHHHHHHccCC
Confidence 887 4466 6677777777766555
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=4.1e-07 Score=83.83 Aligned_cols=205 Identities=8% Similarity=-0.013 Sum_probs=111.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010313 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (513)
.|++++|.+++++..+.. +.. + +...++++.|...|++. ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777666531 111 0 11146667776666654 345666777777777
Q ss_pred HHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010313 283 IYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 283 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
.|.+..+. |-.. -..+|+.+...|...|++++|...|++..+. +...|+...+..+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~a~~---- 118 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVENGTPDTAAMA---- 118 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTTTCHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHcCCHHHHHHH----
Confidence 77765441 1111 1456777778888888888888888776542 1122222111111
Q ss_pred HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 010313 358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA- 432 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 432 (513)
+..+...|.. |++++|++.|++.+... .......+++.+...|...|++++|++.+++..+.
T Consensus 119 ------------~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 119 ------------LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp ------------HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1124444444 66666666655544311 11111345666666677777777777777765432
Q ss_pred ---CCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010313 433 ---GWRLC-RSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 433 ---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+..+. ...+..+...+...|++++|...|++..
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11111 1244455555666677777777777666
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=1.9e-07 Score=94.14 Aligned_cols=152 Identities=9% Similarity=-0.126 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010313 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (513)
|++++|.+.|++..+..+.+...|..+...|...|++++|++.|++..+. .+-+...|..+..++...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555555554443334555555555555555555555555555532 1223445555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 010313 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS---GNLPRMEKIYELVKHH 325 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 325 (513)
++..+... -+...|..+..+|.+.|++++|.+.|++..+.. .-+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 55554322 134455555555555555555555555554421 11344555555555555 5555555555555443
No 106
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=1.7e-05 Score=72.89 Aligned_cols=168 Identities=9% Similarity=-0.079 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHH
Q 010313 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL-L-LVDHMEAAF 249 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~ 249 (513)
++|+++++.+...++.+..+|+.--..+...| .+++++++++.+... .+-+..+|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34455555554444444444444444444444 255555555555432 223334444444444333 3 445555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-------hHH
Q 010313 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWG--------KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-------LPR 314 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~ 314 (513)
+++.+... .|..+|+.-...+.+.|.++ ++++.++++.+.... |...|+.....+.+.++ +++
T Consensus 149 ~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 55554332 24445544444444444443 555555555554322 45555555555544443 456
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010313 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
+++.+++.... .+.|...|+-+-..+.+.|
T Consensus 227 ELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 227 ELIYILKSIHL-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 66666666654 2346666665555555544
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=8e-07 Score=81.85 Aligned_cols=165 Identities=8% Similarity=-0.004 Sum_probs=107.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccC--C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHL--K----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIV 227 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~ 227 (513)
.|......|...|++++|.+.|.+..+... . -..+|+.+...|...|++++|+..|++.... .|-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344455667777888888888877654321 1 1457777788888888888888888776532 11111 134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCCC-HH
Q 010313 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-----NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMPD-TN 297 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ 297 (513)
+++.+...|.. |++++|+..|++..+..... ...+++.+...|.+.|++++|++.|++.... +..++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 66777777777 88888888887766421100 1356777777888888888888888776641 21111 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010313 298 TYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
++..+..++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55666666777788888888887776
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=7.2e-07 Score=76.90 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=121.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHH----------------HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTK----------------GIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 194 (513)
.++++.|...|+...+.. |-+...|.. +..+|.+.|++++|...|++..+..+.+...|.
T Consensus 17 ~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 92 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE 92 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 467788888887776532 224455555 888999999999999999999998877999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010313 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL--VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (513)
.+...+...|++++|+..|++..+. -+-+..+|..+..++...|+ .+.+...++.... ..|....+..+..++.
T Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 93 ACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence 9999999999999999999999975 24467888888888866654 4455666666542 2233334444566677
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010313 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
..|++++|+..|++..+ +.|+......+.
T Consensus 169 ~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 169 FTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 78999999999999988 568865544443
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=1.4e-05 Score=78.50 Aligned_cols=361 Identities=9% Similarity=0.002 Sum_probs=223.5
Q ss_pred chhHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC-HHHHHHHHHHHHhc-c--CCCHhHH
Q 010313 119 NGYAFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN-VDLAADLFAEAANK-H--LKTIGTY 193 (513)
Q Consensus 119 ~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-~--~~~~~~~ 193 (513)
-..+|...+..+- +..+.+..+|+.... ..|+...|...+....+.+. .+....+|+..... | +.+...|
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4567888888885 788889999987654 34699999999888877763 46678888887764 3 2377888
Q ss_pred HHHHHHHH----HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHCC
Q 010313 194 NALLGAYM----YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------------LLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 194 ~~li~~~~----~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g 256 (513)
...+..+. ..++.+.+.++|+..... ...--...|......-.. .+.+..|..+++++...-
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88887654 346788999999999852 111112233322221111 112333444555444210
Q ss_pred CCCCHHHHHHHHHHHHHcc--C-----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010313 257 LSPNVFTYNYLIAGYMTAW--M-----WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 257 ~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
...+...|...+.--...+ - .+.+..+|+++.... .-+...|...+.-+.+.|+++.|..++++.... +.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~ 244 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD 244 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 0013445655554422211 1 345678899887743 345778888888889999999999999999988 44
Q ss_pred cHHHHHHHHHHHHhcCChhHH-HHHHHHHHhCC-------CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010313 330 EFPLIRAMICAYSKCSVTDRI-KKIEALMRLIP-------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 401 (513)
+...+.. |......+.. ..+.+.+.... ........+...+....+.+..+.|..+|+.. .... .
T Consensus 245 ~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~ 317 (493)
T 2uy1_A 245 GMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--V 317 (493)
T ss_dssp SSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--C
T ss_pred cHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--C
Confidence 4444332 2222111111 11111110000 00000111223555555678899999999988 3222 2
Q ss_pred hHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010313 402 TVRIMRCIVSSYFR-CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 402 ~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
...+|......-.. .++.+.|..+|+...+.... +...+...++...+.|+.+.|..+|+... .....|...+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 34445432222222 33699999999988764322 34556777888888999999999999973 2567888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 010313 481 YAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.--...|+.+.+.++++++.+
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888889999999998888764
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=1.5e-06 Score=76.00 Aligned_cols=190 Identities=11% Similarity=-0.028 Sum_probs=123.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CH-HHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-NV-FTYN 265 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~ 265 (513)
+...+..+...+.+.|++++|+..|+++.+...-.|. ...+..+..++.+.|++++|+..|+++.+....- .. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3456667778889999999999999999875211121 3578888999999999999999999998754321 11 2444
Q ss_pred HHHHHHHH------------------ccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010313 266 YLIAGYMT------------------AWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 266 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
.+..++.+ .|++++|+..|+++.+. .|+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 44444443 45677777777777763 2332 111111100 00011110
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010313 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
.....+...|.+.|+++.|...++.+.+..+.+. .+.....+..+|.+.|+.++|.+.++.+...+.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1123456778899999999888777666544432 222233689999999999999999998887543
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=6e-06 Score=75.34 Aligned_cols=199 Identities=7% Similarity=-0.098 Sum_probs=124.9
Q ss_pred ccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHhcccCCHHHHHHHHHHHHhccCCCH--
Q 010313 116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY---TKGIKFAGRINNVDLAADLFAEAANKHLKTI-- 190 (513)
Q Consensus 116 ~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-- 190 (513)
..|+..++..+...+.-.++. ++. .. ...+...+ ...+..+...|++++|.+++++..+....+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~---~~~----~~---~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~ 111 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIH---FYE----VL---IYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF 111 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHH---HHH----TT---TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHH---HhC----CC---CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH
Confidence 367888888888877766542 221 11 11123333 2336667788888888888888776433221
Q ss_pred ----hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----C-CC
Q 010313 191 ----GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKD----S-NL 257 (513)
Q Consensus 191 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~ 257 (513)
..+..+...+...|++++|+..|++......-.++ ..+|+.+..+|...|++++|+..|++..+ . +.
T Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 13334566666677888888888888763111222 23677888888888888888888887763 1 11
Q ss_pred CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 010313 258 SPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMPD-TNTYLLLLRGYAHSGN-LPRMEKIYELVKH 324 (513)
Q Consensus 258 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~ 324 (513)
.+. ..+|..+...|.+.|++++|++.+++..+ .+..+. ..+|..+..++.+.|+ +++|.+.+++...
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 111 23667777778888888888887777653 222222 5677777777777774 5777777766543
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=1.2e-06 Score=75.68 Aligned_cols=176 Identities=10% Similarity=-0.119 Sum_probs=138.0
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHH
Q 010313 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSL 212 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 212 (513)
|+..|+...+.+ +...+..+-..|...+++++|.+.|++..+.| +...+..|...|.. + +.++|++.
T Consensus 5 A~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 455566555543 78888888888888999999999999988764 66778888888877 6 89999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----ccCHHHHHHH
Q 010313 213 FRDLKKEANISPSIVTYNTLISVFGR----LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMT----AWMWGKVEEI 283 (513)
Q Consensus 213 ~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~ 283 (513)
|++..+. -+...+..|...|.. .+++++|+..|++..+.|.. .+...+..|-..|.. .+++++|+++
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998763 377788888888877 78999999999998876531 026788888888888 7789999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhccC
Q 010313 284 YQMMKAGPVMPDTNTYLLLLRGYAHS-G-----NLPRMEKIYELVKHHVD 327 (513)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~~ 327 (513)
|++..+. ..+...+..|...|... | ++++|...|+...+.|.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9998875 23455677777777653 3 89999999998888764
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=1.3e-06 Score=79.77 Aligned_cols=200 Identities=9% Similarity=-0.052 Sum_probs=116.4
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH------
Q 010313 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI------ 190 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------ 190 (513)
.|+..++..+...++-.++.-......-. +.....+...+..+...|++++|.+.+++..+......
T Consensus 43 ~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~ 115 (293)
T 2qfc_A 43 YPSMDILQGIAAKLQIPIIHFYEVLIYSD-------IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFL 115 (293)
T ss_dssp CCCHHHHHHHTTTSCCCTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCHHHHhccccccc-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHH
Confidence 46665555555555544443222221110 11233445566677778888888888777665433211
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-----
Q 010313 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPN----- 260 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~----- 260 (513)
..+..+...+...|++++|++.|++...... ..+. ..+|+.+...|...|++++|+..|++..+. ...|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 2233455556667788888888777764210 1111 346777777777788888888777776621 00112
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010313 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRM-EKIYELVK 323 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~ 323 (513)
..+|+.+...|.+.|++++|++.+++..+. +... -..+|..+...|.+.|++++| ...+++..
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 246777777777777888777777775531 1111 156677777777777777777 66566544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=5.9e-07 Score=90.59 Aligned_cols=153 Identities=8% Similarity=-0.094 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010313 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++.+.|.+.++...+. .+-+...|..+...+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|++
T Consensus 3 g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4566777777766543 234678889999999999999999999999998877788899999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHH
Q 010313 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WMWGKVEEIYQMMK 288 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 288 (513)
.|++..+. .+.+...|..+..++.+.|++++|.+.|++..+... -+...+..+...+... |++++|.+.+++..
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99998875 244678899999999999999999999999987643 3678888899999999 99999999999987
Q ss_pred cCC
Q 010313 289 AGP 291 (513)
Q Consensus 289 ~~g 291 (513)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 743
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=6.1e-08 Score=78.79 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.+...|.+.|++++|++.|++.++. .|.+...|..+...|...|++++|...|++..+.... +...|..+...|.+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4777888888888888888888774 3556677888888888888888888888888765532 566777788888888
Q ss_pred CCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010313 452 RRVEEMESV-LKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 452 g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888776654 46666654 4456677776666666664
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=1.2e-06 Score=72.17 Aligned_cols=127 Identities=7% Similarity=-0.108 Sum_probs=70.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+...|++++|...|++..+..+.+..+|..+...+...|++++|++.|++..+. .+.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 34445555566666666666666666554445666666666666666666666666666543 1334555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHH
Q 010313 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI--AGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m 287 (513)
..|++++|...|++..+... .+...+..+. ..+.+.|++++|++.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666655432 1333332222 2244555555555555443
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.68 E-value=1.2e-06 Score=79.73 Aligned_cols=161 Identities=9% Similarity=-0.136 Sum_probs=128.0
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...+..+...+...|++++|...|++..+. -+-+...+..+...+.+.|++++|...+++..... |+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 6777888889999999999999999999875 24467889999999999999999999999987653 5554333333
Q ss_pred -HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHhcCC
Q 010313 269 -AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSV 346 (513)
Q Consensus 269 -~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 346 (513)
..+.+.++.++|+..|++..... ..+...+..+...+...|++++|...|.++.+..... +...+..+...|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 34667888899999999988743 2358889999999999999999999999998864322 26677888888888887
Q ss_pred hhHHHHHH
Q 010313 347 TDRIKKIE 354 (513)
Q Consensus 347 ~~~a~~~~ 354 (513)
.+.+...+
T Consensus 271 ~~~a~~~~ 278 (287)
T 3qou_A 271 GDALASXY 278 (287)
T ss_dssp TCHHHHHH
T ss_pred CCcHHHHH
Confidence 77665544
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=6.9e-06 Score=74.96 Aligned_cols=128 Identities=7% Similarity=-0.037 Sum_probs=95.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----c-CCccc-HhhHH
Q 010313 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTT----VRIMRCIVSSYFRCNAVDKLANFVKRAES----A-GWRLC-RSLYH 442 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~ 442 (513)
+...+...+++++|+..|++.+.......+ ..+++.+...|...|++++|.++++++.+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 566667778899999999888873222222 34688899999999999999999998763 1 22222 34678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCC-HhHHHHHHHHHH
Q 010313 443 SKMVMYASQRRVEEMESVLKEMENY----KIDCS-KKTFWIMYYAYATCGQ-RRKVNQVLGLMC 500 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 500 (513)
.+...|.+.|++++|...+++..+. +..+. ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8889999999999999999877642 22222 6788899999999995 699998888764
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=5.4e-07 Score=75.35 Aligned_cols=159 Identities=8% Similarity=-0.056 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010313 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
..+..+...+...|++++|+..|++..+. -+-+...+..+...+.+.|++++|+..|++..+.. |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 45566777888999999999999987754 24467788999999999999999999999987653 354443332222
Q ss_pred -HHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHhcCCh
Q 010313 271 -YMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 271 -~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 347 (513)
+.+.++..+|+..|++..+. .| +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 22333445578888888763 35 47888889999999999999999999988865432 355677788888888887
Q ss_pred hHHHHHHH
Q 010313 348 DRIKKIEA 355 (513)
Q Consensus 348 ~~a~~~~~ 355 (513)
+++...++
T Consensus 161 ~~A~~~y~ 168 (176)
T 2r5s_A 161 NAIASKYR 168 (176)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 77665544
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=1.9e-06 Score=66.73 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...+..+...+.+.|++++|.++|+++....+.+..++..+...+.+.|++++|+.+|+++.+. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 3445555555666666666666666665554445555666666666666666666666665543 13345555555555
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 010313 236 FGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~ 255 (513)
+...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666555543
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=4.5e-06 Score=71.99 Aligned_cols=129 Identities=9% Similarity=-0.056 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010313 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
.+..+...+...|++++|++.|++.. .|+...|..+...+.+.|++++|+..|++..+... .+...|..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 34445555666677777776666542 34666666666667777777777777766665432 2556666666677
Q ss_pred HHccCHHHHHHHHHHHHcCC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010313 272 MTAWMWGKVEEIYQMMKAGP--------------VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~~g--------------~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
...|++++|++.|++..+.. ..| ....+..+..++...|++++|.+.|+...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777776666532 111 13566777777777777777777777777653
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=4.2e-07 Score=76.08 Aligned_cols=122 Identities=9% Similarity=0.073 Sum_probs=89.8
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 010313 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV-FGRLLLV-- 242 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~-- 242 (513)
+...|++++|.+.++...+..+.+...|..+...|...|++++|+..|++..+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 356678888888888877776667788888888888888888888888888764 13466677777777 6778887
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010313 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
++|...|++..+... -+...|..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888877543 25677777888888888888888888887763
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=5.7e-07 Score=76.96 Aligned_cols=158 Identities=11% Similarity=-0.032 Sum_probs=105.8
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC-CHHHHHHHHHHHHhcCCh
Q 010313 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE---ANISP-SIVTYNTLISVFGRLLLV 242 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~ 242 (513)
...|++++|.++++.+.........++..+...+...|++++|++.|++.... .|..+ ...+++.+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888888655554322125678888888888889998888888877652 11112 235677788888888888
Q ss_pred hHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCC-CCHHHHHHHHHHHHhcCC
Q 010313 243 DHMEAAFQEIKDS----NLSP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVM-PDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 243 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~g~ 311 (513)
++|...+++..+. +-.+ ...++..+...+...|++++|...+++.... +-. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888876642 2111 2345777778888888888888888876531 211 113445777788888888
Q ss_pred hHHHHHHHHHHHh
Q 010313 312 LPRMEKIYELVKH 324 (513)
Q Consensus 312 ~~~a~~~~~~~~~ 324 (513)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=2.4e-06 Score=66.80 Aligned_cols=117 Identities=10% Similarity=-0.036 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+...|++++|.+.|++.....+.+...|..+...+...|++++|++.+++.... .+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 344444455555555555555555555444334555555555555555555555555555542 122344455555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010313 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
.+.|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 555555555555555544322 134444444444444443
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=2.8e-06 Score=66.40 Aligned_cols=96 Identities=9% Similarity=-0.063 Sum_probs=56.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+......|.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|++.|++..+. -+.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 34445555566666666666666666555555666666666666666666666666665543 1334455666666666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 010313 238 RLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~ 255 (513)
..|++++|++.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666665553
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=3.4e-05 Score=75.74 Aligned_cols=328 Identities=7% Similarity=-0.073 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-SDKCQSLFRDLKKEANISP-SIVTYNTLI 233 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~g~~p-~~~~~~~li 233 (513)
..+|...+..+-. |+++.+..+|++.... .|++..|..-+....+.+. .+....+|+......|..| +...|...+
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 3444455555433 8999999999998884 4688999999988877763 4678889998887656433 667888877
Q ss_pred HHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHcCCCCCCH
Q 010313 234 SVFG----RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-------------AWMWGKVEEIYQMMKAGPVMPDT 296 (513)
Q Consensus 234 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~g~~p~~ 296 (513)
..+. ..++++.+..+|++.+.....--...|......-.. .+.+..|..+++++...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 346788999999999974222112333333221111 12233445555554431000133
Q ss_pred HHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 010313 297 NTYLLLLRGYAHSG--N-----LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369 (513)
Q Consensus 297 ~t~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (513)
..|...+.--...+ - .+.+..+|+++... .+.+...|...+.-+.+.|+.+.|..+++..... +.+..-|.
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence 45555444432221 1 34567789888875 3456788888888888999999998887766666 43332221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010313 370 NVLLIRVYAKEDCLEEMEKSINDAFEHK-----------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 438 (513)
.|....+.++. ++.+...- .......+|...+....+.++.+.|..+|+++ ... ..+.
T Consensus 251 ------~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 251 ------YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp ------HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred ------HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 22222111221 22222110 01112345777777777788999999999998 321 1233
Q ss_pred hhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010313 439 SLYHSKMVMYAS-QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 439 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..|......-.. .++.+.|..+|+...+.- +-+...|...++...+.|+.+.|..+|++.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444322222222 336999999999988753 334556777888888999999999998875
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=3.7e-06 Score=72.61 Aligned_cols=181 Identities=13% Similarity=0.018 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 010313 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG----NLPRMEKIY 319 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~ 319 (513)
+|.+.|++..+.| +...+..+-..|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566665542 55566666666666666666666666666544 44555555555555 4 566666666
Q ss_pred HHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010313 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399 (513)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (513)
++..+.| +...+..|...|.. +....+++++|.++|++..+.+..
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~--------------------------------g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVN--------------------------------RQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTC--------------------------------GGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred HHHHHCC---CHHHHHHHHHHHHc--------------------------------CCCCccCHHHHHHHHHHHHHcCCC
Confidence 6654432 22222222222221 000134556666666655554331
Q ss_pred CchHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010313 400 VTTVRIMRCIVSSYFR----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ-R-----RVEEMESVLKEMENYK 468 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 468 (513)
......+..|...|.. .++.++|.++|++..+.+ .+...+..|...|... | ++++|...|+...+.|
T Consensus 122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 1113334455555555 556666666666665441 1222344444444432 2 5666666666665555
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=1.8e-06 Score=67.86 Aligned_cols=99 Identities=10% Similarity=-0.045 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
.+...+..+...+.+.|++++|.+.|++..+....+...|..+...+...|++++|++.|++..+. .+.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 344455555555555555555555555555544445555555555555555555555555555543 122344555555
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 010313 234 SVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~ 254 (513)
.++.+.|++++|...|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555544
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.52 E-value=9.4e-06 Score=69.90 Aligned_cols=129 Identities=12% Similarity=-0.028 Sum_probs=105.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+...|++++|.+.|++... ++...|..+...|...|++++|++.|++..+. .+.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 345566777889999999999988742 37788999999999999999999999998875 2456788899999999
Q ss_pred hcCChhHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010313 238 RLLLVDHMEAAFQEIKDSNLS--------------P-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
..|++++|+..|++..+.... | +...|..+..+|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998875322 1 12778888899999999999999999998743
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.52 E-value=6e-06 Score=67.79 Aligned_cols=131 Identities=8% Similarity=-0.039 Sum_probs=99.7
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...|++..+... .+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 556778888888999999999999988864 244678888888889999999999999998887643 36778888888
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 010313 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY--LLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
++.+.|++++|.+.|++..+.. ..+...+ ..+...+...|++++|.+.++....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999999999998887642 1234444 3334446677888888888776543
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=3.7e-05 Score=70.06 Aligned_cols=160 Identities=5% Similarity=-0.132 Sum_probs=116.8
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL---SP 259 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p 259 (513)
....+...+..+...|++++|.+.+.+..+.. +.+. ..+..+...+...|++++|+..|++..+... .+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44566677888999999999999999888642 2222 2344566677888999999999999875321 12
Q ss_pred C--HHHHHHHHHHHHHccCHHHHHHHHHHHHc----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----C
Q 010313 260 N--VFTYNYLIAGYMTAWMWGKVEEIYQMMKA----GPVMP--DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV----D 327 (513)
Q Consensus 260 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~ 327 (513)
. ..+|+.+...|...|++++|++.|++..+ .+-.+ ...++..+...|...|++++|.+.+++..+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 2 45889999999999999999999998763 11111 12688899999999999999999998876531 1
Q ss_pred CC-cHHHHHHHHHHHHhcCChhHH
Q 010313 328 GK-EFPLIRAMICAYSKCSVTDRI 350 (513)
Q Consensus 328 ~~-~~~~~~~li~~~~~~g~~~~a 350 (513)
.. -..+|..+...|.+.|+.++|
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHH
Confidence 11 145667777777777777766
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=7.2e-06 Score=63.37 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=63.7
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|.+.|+++.+. .+.+..++..+...+.+.|++++|..+|+++.+... .+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 456666677777777777777777777654 234556666677777777777777777777665432 35566666666
Q ss_pred HHHHccCHHHHHHHHHHHHc
Q 010313 270 GYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~ 289 (513)
.+.+.|++++|.+.|+++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666777777776666655
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=2.8e-06 Score=68.66 Aligned_cols=101 Identities=4% Similarity=0.019 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010313 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
|.+...+..+...+.+.|++++|...|+++.+... -+...|..+..+|...|++++|+..|++..+.+ +-+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 33444455555556666666666666666554432 244555555566666666666666666655544 3345555566
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC
Q 010313 480 YYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
..+|.+.|++++|.+.|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666655543
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=0.00018 Score=66.16 Aligned_cols=148 Identities=9% Similarity=-0.077 Sum_probs=109.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010313 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (513)
+.+-....+.+..++|+++++++... -+-+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33333344455667999999999975 2445667888888888888 599999999999987764 8889999888888
Q ss_pred Hc-c-CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010313 273 TA-W-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP--------RMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 273 ~~-g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
+. + ++++++++++++.+..- -|..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+-....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77 7 89999999999998653 36777777666666666565 7888888888764 346777776666666
Q ss_pred hcCC
Q 010313 343 KCSV 346 (513)
Q Consensus 343 ~~g~ 346 (513)
+.+.
T Consensus 213 ~l~~ 216 (349)
T 3q7a_A 213 SRPG 216 (349)
T ss_dssp TSTT
T ss_pred hccc
Confidence 5553
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=3.6e-06 Score=71.87 Aligned_cols=158 Identities=4% Similarity=-0.082 Sum_probs=68.1
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcccchHHHHHHHHHhcCC
Q 010313 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI----PEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~ 382 (513)
...|++++|.++++.+... ......++..+...|...|+++.|...++..... .........+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755444331 2234455666666666666666555443322221 1111111112234445555555
Q ss_pred HHHHHHHHHHHHhc---CC-CC-chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCcc-cHhhHHHHHHHHHhcC
Q 010313 383 LEEMEKSINDAFEH---KT-SV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRL-CRSLYHSKMVMYASQR 452 (513)
Q Consensus 383 ~~~a~~~~~~~~~~---~~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g 452 (513)
+++|.+.+++.... .. .+ .....+..+...+...|++++|...+++..+. +... ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 55555555544432 11 11 12233444455555555555555555544321 1100 1122344444455555
Q ss_pred CHHHHHHHHHHHH
Q 010313 453 RVEEMESVLKEME 465 (513)
Q Consensus 453 ~~~~A~~~~~~m~ 465 (513)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=2.5e-06 Score=75.75 Aligned_cols=188 Identities=6% Similarity=-0.080 Sum_probs=118.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHhcccCCHHHHHHHHHHHHhccCC------C--------
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG-------IKFAGRINNVDLAADLFAEAANKHLK------T-------- 189 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~~~~------~-------- 189 (513)
.+++..|.+.|..+.+.. |-....|.-+ ...+.+.++..+++..+..-.+..+. +
T Consensus 19 ~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 456777777777776652 3356666665 34455555555555544444331100 1
Q ss_pred -------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--
Q 010313 190 -------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-- 260 (513)
Q Consensus 190 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 260 (513)
...+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 223344566677788888888888877642 3554455566667778888888888887555431 111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010313 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
...+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23566677778888888888888888775443243 3355666677778888888888888887764
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=1.9e-06 Score=78.12 Aligned_cols=194 Identities=6% Similarity=-0.112 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010313 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
...+..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|++.+++..+.. .-+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455555555555555555555555554322 145555555556666666666666666555432 1135555566666
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010313 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 385 (513)
+...|++++|...|+...+.... +...+...+....+.. +...... ........ .+.... .+..+ ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~-~~~i~~-~l~~l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRWNS-IEERRIHQ-ESELHS-YLTRL-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHHHH-HHHTCCCC-CCHHHH-HHHHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHHHH-HHHHHHhh-hHHHHH-HHHHH-HHHHHHH
Confidence 66666666666666655442110 0000000111111110 1111111 11111111 111111 12222 2577778
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh
Q 010313 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES 431 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 431 (513)
|.+.+++..+ ..|.+......+...+... +.+++|.++|..+.+
T Consensus 154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8777776665 3344444444444444444 567778888876643
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.45 E-value=6.1e-06 Score=64.48 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=64.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
....|......|.+.|++++|++.|++..+. -+.+...|..+..++.+.|++++|+..|++.++... .+...|..+.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg 88 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHH
Confidence 3455666666777777777777777776653 234566667777777777777777777777666433 2456666666
Q ss_pred HHHHHccCHHHHHHHHHHHHc
Q 010313 269 AGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.++...|++++|++.|++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776665
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=3.2e-07 Score=85.60 Aligned_cols=150 Identities=8% Similarity=0.003 Sum_probs=109.9
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------HHHHHH
Q 010313 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----------------IVTYNT 231 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----------------~~~~~~ 231 (513)
..+++++|.+.|+...+..+.+...|..+...|.+.|++++|+..|++.... .|+ ...|..
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHH
Confidence 3455566666665544433336778888888999999999999999988864 233 477888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcC
Q 010313 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSG 310 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 310 (513)
+..++.+.|++++|+..|++..+... .+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.|
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHH
Confidence 88888888888888888888887643 36777888888888888888888888887763 33 4667777777888888
Q ss_pred ChHHH-HHHHHHHH
Q 010313 311 NLPRM-EKIYELVK 323 (513)
Q Consensus 311 ~~~~a-~~~~~~~~ 323 (513)
+.++| ..+++.|.
T Consensus 279 ~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 279 RQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 87777 34555544
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=5.9e-06 Score=76.98 Aligned_cols=131 Identities=8% Similarity=-0.160 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
+...+..+...|.+.|++++|.+.|++..+..+.+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678888899999999999999999998876655 689999999999999999999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHH
Q 010313 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV-EEIYQMMK 288 (513)
Q Consensus 220 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 288 (513)
.+.+...|..+..++...|++++|+..|++..+... -+...+..+..++.+.|+.+++ ..+|+.|.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245788999999999999999999999999998654 3678899999999999999988 45666664
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=9.7e-06 Score=63.22 Aligned_cols=120 Identities=5% Similarity=-0.130 Sum_probs=79.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...|..+...+...|++++|++.|++.... .+.+...+..+...+...|++++|...+++..+... .+...|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHH
Confidence 4556677777777777888888877777754 234566777777777777777777777777766432 2466666677
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
..+.+.|++++|.+.|++..+.. ..+...+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777766532 12455566666666555543
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=7.2e-06 Score=72.84 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHH
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYA 449 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~ 449 (513)
.+...+...|++++|.++|..+...+ |.+. ....+...+.+.+++++|+..|+...... .|. ...+..+-.++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 36677888999999999998877643 3344 45566678889999999999998554332 121 336777888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 450 SQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999885443253 346677888899999999999999998765
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=3.6e-06 Score=67.99 Aligned_cols=95 Identities=8% Similarity=-0.087 Sum_probs=46.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+.+.|++++|.+.|++.....+.+...|..+..+|...|++++|++.|++..+. -+-+...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHH
Confidence 33344444445555555555555555444444555555555555555555555555555432 1223344444555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 010313 238 RLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~ 254 (513)
+.|++++|+..|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=1.5e-06 Score=70.26 Aligned_cols=97 Identities=8% Similarity=-0.089 Sum_probs=43.0
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...+..+...+...|++++|+..|++.... -+.+...|..+..++...|++++|+..|++...... -+...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 3344444444444555555555555544432 122344444444444444444444444444443321 1333444444
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 010313 269 AGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~ 288 (513)
.+|...|++++|.+.|++..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444443
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=2.2e-06 Score=69.19 Aligned_cols=93 Identities=9% Similarity=-0.087 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|+..|++.+.. .|.+...|..+..+|...|++++|.+.++++...... +...+..+..+|...
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 3666777778888888888877764 3445666777777788888888888888877765432 456667777778888
Q ss_pred CCHHHHHHHHHHHHhC
Q 010313 452 RRVEEMESVLKEMENY 467 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~ 467 (513)
|++++|...|++..+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888777654
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=1.8e-06 Score=78.25 Aligned_cols=94 Identities=6% Similarity=-0.145 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010313 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
+...+..+...+.+.|++++|+..|++..+. .| +...|..+..++.+.|++++|.+.++...+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4566777777777888888888888877663 23 56777777777888888888888887777652 23455556666
Q ss_pred HHHHhcCChhHHHHHHHH
Q 010313 339 CAYSKCSVTDRIKKIEAL 356 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~ 356 (513)
.+|...|++++|...++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 666666666655555443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=1.9e-06 Score=71.98 Aligned_cols=120 Identities=7% Similarity=0.019 Sum_probs=61.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHH-HHhcCCH--H
Q 010313 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM-YASQRRV--E 455 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 455 (513)
..|++++|...+++.+... |.+...+..+...|...|++++|...++++.+.... +...+..+... |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 3455555555555555432 233444555555566666666666666655443311 34444445555 4455555 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+|...+++..+.+ +-+...+..+...|...|++++|.+.|++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666655543 234455555556666666666666666655544
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=1.2e-05 Score=63.10 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=55.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...|..+...+...|++++|++.|++..+. .+.+...+..+...+...|++++|+..|++..+... .+...|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 4555666666666666666666666666542 123455555566666666666666666666555332 2445555555
Q ss_pred HHHHHccCHHHHHHHHHHHHc
Q 010313 269 AGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.++.+.|++++|.+.|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555556665555555544
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=2.5e-05 Score=59.50 Aligned_cols=95 Identities=16% Similarity=0.030 Sum_probs=48.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+..+...+...|++++|.+.|++.....+.+...|..+...+...|++++|...+++..+. .+.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 34444455555555555555555555544334555555555555555555555555555443 1223444555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 010313 238 RLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~ 254 (513)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=9.7e-07 Score=75.38 Aligned_cols=151 Identities=5% Similarity=-0.085 Sum_probs=82.7
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------------HH
Q 010313 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------------IV 227 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------------~~ 227 (513)
.+......|+++++.+.|+.-..........+..+...+...|++++|++.|++......-.|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3444455666777776666444332235567777788888888888888888888753111111 15
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHH
Q 010313 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGY 306 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~ 306 (513)
.|..+..++.+.|++++|+..+++..+... .+...|..+..+|...|++++|++.|++..+. .| +...+..+..++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence 566666666666666666666666665432 24556666666666666666666666666552 23 344555555555
Q ss_pred HhcCChHHH
Q 010313 307 AHSGNLPRM 315 (513)
Q Consensus 307 ~~~g~~~~a 315 (513)
...++.+++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444444433
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=0.00086 Score=61.30 Aligned_cols=164 Identities=6% Similarity=-0.100 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 010313 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL--L 241 (513)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g--~ 241 (513)
+|+++++.+...++.+..+||.--..+...+. +++++.+++.+... -+-+..+|+.-.-.+.+.| .
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCccc
Confidence 55666666655555454455443333322222 45555666655543 2334455555555555555 2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------
Q 010313 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS----------- 309 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 309 (513)
+++++.+++++.+... .|..+|+.-...+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence 5566666666665443 255566655555555555 35666666666554322 444555444444333
Q ss_pred ---CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010313 310 ---GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 310 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
+.++++++.++...... +.|...|+-+-..+.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 23556666666666542 345555654433333
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.4e-05 Score=62.26 Aligned_cols=96 Identities=8% Similarity=-0.106 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+.+.|++++|.+.|++..+..+.+...|..+..+|.+.|++++|++.|++..+. -+-+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 345555556666666666666666666655556666666666666666666666666666653 123455666666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 010313 237 GRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~ 254 (513)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666654
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=7.9e-06 Score=61.80 Aligned_cols=98 Identities=13% Similarity=-0.021 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP--SIVTYNTLI 233 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li 233 (513)
...+..+...+.+.|++++|...|++..+..+.+...|..+...+...|++++|++.|++..+. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence 3445555566666666666666666666555445566666666666666666666666666643 122 355666666
Q ss_pred HHHHhc-CChhHHHHHHHHHHHC
Q 010313 234 SVFGRL-LLVDHMEAAFQEIKDS 255 (513)
Q Consensus 234 ~~~~~~-g~~~~A~~~~~~m~~~ 255 (513)
.++.+. |++++|.+.|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=1.7e-05 Score=67.59 Aligned_cols=131 Identities=12% Similarity=-0.080 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH----------------hHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI----------------GTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 220 (513)
..+..+...+.+.|++++|.+.|++..+....+. ..|..+..+|...|++++|+..|++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 3556677778889999999999998887544333 78888999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHcC
Q 010313 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAG 290 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 290 (513)
.+.+...|..+..++...|++++|...|++..+... -+...+..+..++...++.+++. ..|..|...
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC------------
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 245678899999999999999999999999987643 26778888888888877777766 555555543
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.2e-05 Score=60.13 Aligned_cols=97 Identities=8% Similarity=0.046 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+.+.|++++|+..|++..+. .+.+...|..+..++.+.|++++|+..|++..+... -+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 345666666777777777777777777654 234566677777777777777777777777766533 24566666666
Q ss_pred HHHHccCHHHHHHHHHHHHc
Q 010313 270 GYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~ 289 (513)
++...|++++|.+.|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777766655
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=5.6e-05 Score=59.64 Aligned_cols=99 Identities=12% Similarity=-0.069 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
.+...+..+...+...|++++|...|+......+.+...|..+...+...|++++|+..|++..+. .+.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 466677777777777888888888888777766557777777777777788888888888777764 234566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 010313 234 SVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~ 254 (513)
.++...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777664
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1.2e-05 Score=62.74 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=52.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCC----HHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPS----IVTYNTL 232 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~----~~~~~~l 232 (513)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...|++...... ..++ ..+|..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4455555555666666666666665555444555566666666666666666666665544210 0111 4455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 010313 233 ISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..++.+.|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=1.4e-05 Score=60.34 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 010313 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC--SKKTFWIMYY 481 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~ 481 (513)
..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3455566666677777777777776665442 245556666777777777777777777777654 33 4667777777
Q ss_pred HHHhc-CCHhHHHHHHHHHHHCC
Q 010313 482 AYATC-GQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 482 ~~~~~-g~~~~A~~~~~~m~~~g 503 (513)
.+.+. |++++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777776553
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=1.7e-05 Score=63.43 Aligned_cols=93 Identities=5% Similarity=-0.126 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|+..|++.+... |.+...|..+..+|...|++++|...+++..+.... +...+..+..+|...
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 36677788888888888888887743 445667778888888888888888888888766532 556677788888888
Q ss_pred CCHHHHHHHHHHHHhC
Q 010313 452 RRVEEMESVLKEMENY 467 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~ 467 (513)
|++++|...|+...+.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888887764
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=2e-05 Score=61.62 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=50.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC----HHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPS----IVTYNTL 232 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~----~~~~~~l 232 (513)
.+..+...+.+.|++++|++.|++..+..+.+...|+.+..+|.+.|++++|++.|++..+.. ...++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555666666666666666655544455566666666666666666666665554320 00111 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 010313 233 ISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555443
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=2e-05 Score=63.02 Aligned_cols=93 Identities=11% Similarity=-0.124 Sum_probs=49.1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010313 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
..+...+.+.|++++|...|++.....+.+...|..+..+|...|++++|+..|++.... -+-+...|..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 334444555555555555555555554445555555555555555555555555555543 122334455555555555
Q ss_pred CChhHHHHHHHHHHH
Q 010313 240 LLVDHMEAAFQEIKD 254 (513)
Q Consensus 240 g~~~~A~~~~~~m~~ 254 (513)
|++++|...|++..+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=3.1e-05 Score=63.52 Aligned_cols=99 Identities=11% Similarity=-0.037 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+...+..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..|++..+. .+-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 44555666666667777777777777766665556667777777777777777777777776653 1334566666666
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 010313 235 VFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~ 255 (513)
++...|++++|+..|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777666653
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=0.00063 Score=65.54 Aligned_cols=189 Identities=8% Similarity=-0.109 Sum_probs=100.9
Q ss_pred HhcccCCHHHHHHHHHHHHhccCC--C---------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010313 165 FAGRINNVDLAADLFAEAANKHLK--T---------------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~--~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
.+.+.|++++|.+.|..+.+.... + ..++..+...|...|++++|.+.+..+....+..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345566677777776666554322 1 11355666677777777777777766554211122221
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CC--CC
Q 010313 228 ----TYNTLISVFGRLLLVDHMEAAFQEIKD----SNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PV--MP 294 (513)
Q Consensus 228 ----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p 294 (513)
+.+.+-..+...|+.+.|..++++... .+..+. ..++..+...|...|++++|..++++.... +. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 222233333445666777666666542 222222 345666666777777777777776665431 11 11
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCC-C-c--HHHHHHHHHHHHhcCChhHHHHH
Q 010313 295 -DTNTYLLLLRGYAHSGNLPRMEKIYELVKHH--VDG-K-E--FPLIRAMICAYSKCSVTDRIKKI 353 (513)
Q Consensus 295 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~li~~~~~~g~~~~a~~~ 353 (513)
...+|..++..|...|++++|..+++..... ... | . ...+..+...+...|+++.|...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1456666677777777777777777665431 111 1 1 23444455555566666655443
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=0.00012 Score=55.61 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=66.6
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..+... .+...|..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 445666677777777777777777777654 233566677777777777777777777777766432 24666666777
Q ss_pred HHHHccCHHHHHHHHHHHHcC
Q 010313 270 GYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~ 290 (513)
++...|++++|.+.|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777776653
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=2.9e-05 Score=63.70 Aligned_cols=94 Identities=5% Similarity=-0.095 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|++.|++.++.. |.+...|..+..+|...|++++|+..+++..+.... +...|..+..+|...
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 57788889999999999999988853 446777889999999999999999999998876633 577888899999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 010313 452 RRVEEMESVLKEMENYK 468 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~ 468 (513)
|++++|...|++..+..
T Consensus 93 g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999988754
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=3.7e-05 Score=60.00 Aligned_cols=98 Identities=7% Similarity=-0.071 Sum_probs=64.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~ 263 (513)
...+..+...+.+.|++++|++.|++..+. .+-+...|+.+..+|.+.|++++|++.|++.++... .++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345667777777788888888888777754 234566777777777777777777777777664321 111 134
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010313 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
|..+..++...|++++|++.|++...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566666666777777777766554
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=2.3e-05 Score=61.10 Aligned_cols=109 Identities=7% Similarity=-0.037 Sum_probs=70.0
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHH
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPN----VFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~ 263 (513)
...|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..+... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345666777777777788888777777754 234566677777777777777777777777665321 112 556
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010313 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
|..+..++.+.|++++|.+.|++..+. .|+......+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 666666677777777777777766653 2444444333
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=7e-05 Score=59.85 Aligned_cols=100 Identities=9% Similarity=-0.067 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
.+...+..+...+.+.|++++|.+.|++..+..+.+ ...|..+...|...|++++|++.|++..+. .+.+...|.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 355566666666677777777777777766654433 566666666677777777777777766653 123455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 010313 231 TLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666667777777766666654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=4.9e-05 Score=59.95 Aligned_cols=93 Identities=8% Similarity=-0.101 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.+...+...|++++|...|.+.+... |.+...|..+...+...|++++|...+++..+.... +...+..+..+|...
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHH
Confidence 46666777777777777777776643 334556777777777777777777777777655422 456666777777777
Q ss_pred CCHHHHHHHHHHHHhC
Q 010313 452 RRVEEMESVLKEMENY 467 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~ 467 (513)
|++++|...|++..+.
T Consensus 91 ~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 91 ESYDEAIANLQRAYSL 106 (137)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7777777777766643
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=0.00017 Score=69.59 Aligned_cols=197 Identities=11% Similarity=-0.002 Sum_probs=106.5
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcH
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMP-D---------------TNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEF 331 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 331 (513)
..+.+.|++++|++.|.++.+..-.. + ...+..+...|...|++++|.+.+..+.+. +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678899999999999987743211 1 134677888899999999999888876552 111222
Q ss_pred H----HHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 010313 332 P----LIRAMICAYSKCSVTDRIKKIEALMRL----IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH----KTS 399 (513)
Q Consensus 332 ~----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~ 399 (513)
. +.+.+-..+...|+.+.+.+.++.... ..........+..+...|...|++++|..++++.... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 222222233344555555554433322 1111111122234566666666666666666654432 222
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010313 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWRLC--RSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+....++..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333445566666666666666666666655321 11111 2334444455556666666666665554
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=3.4e-05 Score=59.66 Aligned_cols=91 Identities=11% Similarity=-0.073 Sum_probs=51.3
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010313 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 241 (513)
+...+.+.|++++|...|++..+..+.+...|..+..++...|++++|+..|++..+. -+-+...+..+..++.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3444555566666666666665555445556666666666666666666666655543 12234455555555556666
Q ss_pred hhHHHHHHHHHHH
Q 010313 242 VDHMEAAFQEIKD 254 (513)
Q Consensus 242 ~~~A~~~~~~m~~ 254 (513)
+++|+..|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=3.5e-05 Score=62.58 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=46.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCC--C----HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK--T----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IV 227 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ 227 (513)
++..+...+...|++++|.+.+++..+.... + ..++..+...+...|++++|.+.|++......-..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555556666666666666655432111 1 235555555666666666666666554432000011 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 010313 228 TYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
.+..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444445555555554444443
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.0035 Score=57.26 Aligned_cols=185 Identities=10% Similarity=-0.041 Sum_probs=130.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHHHH
Q 010313 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAYMY 202 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 202 (513)
..+.|+++++.+... .|-+..+|+.--.++...+. +++++.+++.+....+++..+|+.-...+.+
T Consensus 45 ~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 45 LDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 445677777777653 23355556544333333332 6788999999998888888999988888888
Q ss_pred cCC--hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----
Q 010313 203 NGL--SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA----- 274 (513)
Q Consensus 203 ~g~--~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 274 (513)
.|+ +++++++++.+.+. -+-|-..|+.-.-++...|. ++++++.++++.+..+ -|...|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 121 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccc
Confidence 774 78999999999875 35677888888877888887 5899999999998765 4888888887777665
Q ss_pred ---------cCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhc
Q 010313 275 ---------WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-----------GNLPRMEKIYELVKHH 325 (513)
Q Consensus 275 ---------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~ 325 (513)
+.++++++.+++..... +-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 45788888888887643 22566666554444443 2355566666666554
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=6.9e-05 Score=57.88 Aligned_cols=95 Identities=4% Similarity=-0.174 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010313 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
.+..+...+.+.|++++|+..|++..+. -+-+...|..+..++...|++++|+..|++..+.... +...|..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4556667788889999999999888865 2446778888888888889999999999888876432 667888888888
Q ss_pred HHccCHHHHHHHHHHHHc
Q 010313 272 MTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~ 289 (513)
.+.|++++|+..|++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888876
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=4.5e-05 Score=61.92 Aligned_cols=135 Identities=11% Similarity=-0.063 Sum_probs=96.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS-PN---- 260 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 260 (513)
..++..+...+...|++++|++.|++..+...-.++. .++..+...+...|++++|...+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4578888888999999999999998876531111221 46778888888999999999998887642100 11
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010313 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
..++..+...+...|++++|.+.+++..+. +-.+ ...++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777778888888999988888876542 2111 145677777888888888888888877655
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=0.00023 Score=56.69 Aligned_cols=97 Identities=7% Similarity=-0.102 Sum_probs=49.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 264 (513)
+...+..+...+...|++++|++.|++..+. .|+ ...|..+..++...|++++|+..+++..+... .+...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence 4455555555555556666666666555532 344 34445555555555555555555555544321 134444
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHc
Q 010313 265 NYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
..+..++...|++++|.+.|++..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=0.00025 Score=55.03 Aligned_cols=91 Identities=15% Similarity=-0.008 Sum_probs=57.9
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 010313 162 GIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLIS 234 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~ 234 (513)
+...+.+.|++++|.+.|+...+..+.+. ..+..+..++...|++++|+..|++..+. .|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHH
Confidence 44455666777777777777666544333 46666666677777777777777776654 232 455666666
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 010313 235 VFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~ 255 (513)
++.+.|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666777777777777666654
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=2.4e-05 Score=76.64 Aligned_cols=121 Identities=7% Similarity=-0.116 Sum_probs=96.6
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010313 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 241 (513)
+...+.+.|++++|.+.|++..+..+.+..+|..+..+|.+.|++++|++.|++..+. -+-+..+|..+..++.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3445678899999999999999887778999999999999999999999999999864 24467889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHccCHHHHHHHHH
Q 010313 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAG--YMTAWMWGKVEEIYQ 285 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 285 (513)
+++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999875432 34455555555 888899999999998
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=9.4e-05 Score=72.00 Aligned_cols=143 Identities=6% Similarity=0.008 Sum_probs=77.1
Q ss_pred cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---------------HHHHHHHH
Q 010313 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---------------IVTYNTLI 233 (513)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---------------~~~~~~li 233 (513)
.+++++|.+.|+...+..+.....|..+...|.+.|++++|+..|++..+.. +.+ ...|..+.
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHH
Confidence 3344444444433332222245555555555556666666666665555421 111 35566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCh
Q 010313 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 312 (513)
.++.+.|++++|+..|++.++... .+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.++.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665432 24566666666666666666666666666653 23 244555566666666665
Q ss_pred HHHH
Q 010313 313 PRME 316 (513)
Q Consensus 313 ~~a~ 316 (513)
+++.
T Consensus 402 ~~a~ 405 (457)
T 1kt0_A 402 NERD 405 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=1e-05 Score=78.90 Aligned_cols=119 Identities=8% Similarity=-0.089 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010313 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN--------------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 293 (513)
.|..+...+.+.|++++|+..|++..+....-. ...|..+..+|.+.|++++|+..|++..+.. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 444445555555555555555555444211110 3445555555555555555555555544421 1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010313 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
-+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 134445555555555555555555555554431 123334444444444444433
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=2.3e-05 Score=76.67 Aligned_cols=121 Identities=11% Similarity=-0.064 Sum_probs=93.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010313 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 453 (513)
...+.+.|++++|++.|++.++. .|.+...|..+..+|.+.|++++|.+.+++..+... -+...|..+..+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 34456789999999999998885 455677899999999999999999999999987653 357788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHH
Q 010313 454 VEEMESVLKEMENYKIDCSKKTFWIMYYA--YATCGQRRKVNQVLGL 498 (513)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 498 (513)
+++|.+.|++..+.+ +-+...+..+..+ +.+.|++++|++++++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999988764 3344556656555 8888999999999883
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=7.4e-05 Score=72.74 Aligned_cols=128 Identities=9% Similarity=-0.023 Sum_probs=94.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-cc-cHhhH
Q 010313 375 RVYAKEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RL-CRSLY 441 (513)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~-~p-~~~~~ 441 (513)
..+...|++++|+.++++.++. | ..|....+++.|..+|...|++++|..++++..+ .|. .| ...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456778999999988877652 1 2334567789999999999999999998887643 231 23 34568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010313 442 HSKMVMYASQRRVEEMESVLKEMEN-----YKI-DCS-KKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+.|...|...|++++|+.++++..+ .|- .|+ ..+.+.+-.++...|.+++|..+++++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887664 231 122 345566778888899999999999988763
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=0.00093 Score=66.63 Aligned_cols=172 Identities=6% Similarity=-0.102 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010313 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
..++|++.++++.+.++.+..+|+.--.++...|+ ++++++.++.+.+. -+-+..+|+.-.-++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34667777777777766666777766666666555 77777777777764 2445667777666677777
Q ss_pred --ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------
Q 010313 241 --LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-------- 309 (513)
Q Consensus 241 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------- 309 (513)
+++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 567788888877776543 7777777777777777 777777777777765432 566666666665553
Q ss_pred ------CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010313 310 ------GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 310 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.++++.+.++...... +.+...|+-+-..+.+.+..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45688888888877753 45777888777777776653
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00022 Score=55.42 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHH
Q 010313 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I---VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN---VFTYNY 266 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ 266 (513)
..+...+...|++++|.+.|++..+. .|+ . ..+..+..++.+.|++++|...|++..+.... + ...+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 34555666777777777777777654 232 2 35666666777777777777777776654321 2 455666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHc
Q 010313 267 LIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+..++.+.|++++|...|+++.+
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666667777777777766665
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=0.00019 Score=67.56 Aligned_cols=121 Identities=6% Similarity=-0.114 Sum_probs=74.5
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHh----------------ccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAAN----------------KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~----------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 221 (513)
.+..+...+.+.|++++|.+.|++..+ ....+...|..+..+|.+.|++++|++.+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 456667777788888888888887765 21124556666666666667777777766666642
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010313 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
-+-+...|..+..++...|++++|+..|++..+... -+...+..+...+.+.++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 123455666666666666666666666666665432 14455555555555555555443
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=4.3e-05 Score=58.57 Aligned_cols=89 Identities=8% Similarity=-0.083 Sum_probs=69.9
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHH
Q 010313 379 KEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 457 (513)
..|++++|+..|++.++.+. .|.+...+..+...|...|++++|.+.+++..+.... +...+..+..+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 46888999999999888531 3556777888999999999999999999999876643 577788889999999999999
Q ss_pred HHHHHHHHhCC
Q 010313 458 ESVLKEMENYK 468 (513)
Q Consensus 458 ~~~~~~m~~~~ 468 (513)
...|++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887653
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.82 E-value=0.00035 Score=56.95 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhc------------------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANK------------------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
...+......+.+.|++++|.+.|++.... ...+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777778888888888888887664 22234566777777777777777777777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010313 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
+. -+.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 1344566777777777777777777777776654
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.77 E-value=0.00041 Score=56.54 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=54.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA------NI----------SPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------g~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (513)
....+......+.+.|++++|+..|.+..... .- +-+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45677788888999999999999998877520 00 011233444444444444444444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010313 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
++... .+...|..+..+|...|++++|...|++..+
T Consensus 90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44321 1344444444444444444444444444443
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.00045 Score=54.65 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh----cCCHH
Q 010313 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS----QRRVE 455 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 455 (513)
.+++++|.+.|++..+.+... . . +...|...+.+++|.++|++..+.| +...+..|-..|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--G--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--H--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--h--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 356888999998888876332 2 2 6666777788888999999988776 45667777777877 88999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 010313 456 EMESVLKEMENYKIDCSKKTFWIMYYAYAT----CGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 505 (513)
+|.+.|++..+.| +...+..|...|.. .++.++|.++|++..+.|..
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999998876 45677788888888 88999999999998888753
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=0.00018 Score=66.94 Aligned_cols=146 Identities=8% Similarity=-0.068 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
..+..+...+.+.|++++|...|++.......+.. +...|+.+++... +. ...|+.+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~---l~--------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALA---VK--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHH---HH--------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHH---HH--------HHHHHHHHHHH
Confidence 34556666777777777777777776654322210 0111111111111 10 02555666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH-HHhcCChHH
Q 010313 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRG-YAHSGNLPR 314 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~ 314 (513)
.+.|++++|+..+++..+... -+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665432 24556666666666666666666666666552 233 2333333333 122344555
Q ss_pred HHHHHHHHHh
Q 010313 315 MEKIYELVKH 324 (513)
Q Consensus 315 a~~~~~~~~~ 324 (513)
+.++|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 5666665554
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=0.002 Score=64.19 Aligned_cols=175 Identities=11% Similarity=-0.016 Sum_probs=140.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC----------HHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010313 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN----------VDLAADLFAEAANKHLKTIGTYNALLGAY 200 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 200 (513)
+...++|++.++.+.... +-+..+|+.--.++.+.|+ ++++++.++.+.+..+++..+|+.-.-.+
T Consensus 42 ~~~~eeal~~~~~~l~~n----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445667888888887652 3467777776666666666 99999999999999888999999999889
Q ss_pred HHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 010313 201 MYNG--LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA--- 274 (513)
Q Consensus 201 ~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--- 274 (513)
.+.| +++++++.++++.+. -+-|..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 9999 679999999999986 3567889998888888889 899999999999987664 889999988887773
Q ss_pred -----------cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHH
Q 010313 275 -----------WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 275 -----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 314 (513)
+.++++++.+++.... .| |...|..+-..+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5678999999888773 34 56777777777766666433
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.71 E-value=8e-05 Score=57.04 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010313 169 INNVDLAADLFAEAANKH---LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245 (513)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 245 (513)
.|++++|+..|++..+.+ +.+...|..+...|...|++++|++.|++..+. .+-+...+..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 466666777777666653 225566666777777777777777777776654 133456666666777777777777
Q ss_pred HHHHHHHHHC
Q 010313 246 EAAFQEIKDS 255 (513)
Q Consensus 246 ~~~~~~m~~~ 255 (513)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666653
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.70 E-value=0.0016 Score=52.04 Aligned_cols=94 Identities=9% Similarity=-0.084 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 010313 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------I-----VTYNTLISVFGRLLLVDHMEAAFQEIKDS--- 255 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 255 (513)
.+......+.+.|++++|++.|++..+- .|+ . ..|+.+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4445555566667777777777666643 233 1 25555555566666666666555555542
Q ss_pred --CCCCC-HHHH----HHHHHHHHHccCHHHHHHHHHHHH
Q 010313 256 --NLSPN-VFTY----NYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 256 --g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
.+.|+ ...| .....++...|++++|+..|++..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 01232 3344 555555555555555555555543
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=0.00069 Score=54.24 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-----------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC
Q 010313 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRL-----------CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----KI 469 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~ 469 (513)
+......+...|++++|.+.|++..+..... +...|..+..++.+.|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344444555566666666665554332110 1225666667777777777777777776664 11
Q ss_pred CC-CHHHH----HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010313 470 DC-SKKTF----WIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 470 ~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.| +...| .....++...|++++|++.|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33 34566 7777778888888888888877653
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00048 Score=64.81 Aligned_cols=120 Identities=8% Similarity=-0.024 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--------------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010313 373 LIRVYAKEDCLEEMEKSINDAFEH--------------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 438 (513)
+...+.+.|++++|++.|++.++. ...+....+|..+..+|.+.|++++|++.++++.+... -+.
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~ 307 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNT 307 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhH
Confidence 444455555555555555554430 02234566788889999999999999999999987553 257
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010313 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (513)
..|..+..+|...|++++|...|++..+.. +-+...+..+...+...++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999988765 4467777788888888877777654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=4.8e-05 Score=57.40 Aligned_cols=90 Identities=9% Similarity=-0.094 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------HHH
Q 010313 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-------IVT 228 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-------~~~ 228 (513)
...+..+...+.+.|++++|.+.|++..+..+.+...|..+..++.+.|++++|++.|++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHHH
Confidence 4455556666666666666666666666655556666666666666666666666666666642 333 334
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 010313 229 YNTLISVFGRLLLVDHMEAA 248 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~ 248 (513)
+..+..++...|+.+.|...
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHhHhhhHhH
Confidence 44444444444444444433
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=0.00024 Score=66.11 Aligned_cols=144 Identities=6% Similarity=-0.037 Sum_probs=88.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
....|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|+.+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHH
Confidence 3556778888889999999999999998764 355432 22233334433222 1 13788899
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-hcCCh
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS-KCSVT 347 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 347 (513)
.+|.+.|++++|+..+++..+.. .-+...|..+..+|...|++++|...|++..+.. +.+...+..+..... ..+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988743 2368899999999999999999999999988753 224445555554423 23434
Q ss_pred hHHHHHH
Q 010313 348 DRIKKIE 354 (513)
Q Consensus 348 ~~a~~~~ 354 (513)
+.+...+
T Consensus 316 ~~a~~~~ 322 (338)
T 2if4_A 316 QKQKEMY 322 (338)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444443
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.56 E-value=0.00038 Score=51.44 Aligned_cols=65 Identities=17% Similarity=0.064 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
-+...+..+...|.+.|++++|++.|++..+..+.+...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36667777777777788888888888877777666677777777888888888888887777664
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.55 E-value=0.0012 Score=52.16 Aligned_cols=110 Identities=7% Similarity=-0.164 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 010313 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR----LLLVDHME 246 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 246 (513)
++++|.+.|++..+.|.++.. |...|...+.+++|++.|++..+. -+...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 445555555555544432222 444444444455555555555432 244444444444444 44555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcCC
Q 010313 247 AAFQEIKDSNLSPNVFTYNYLIAGYMT----AWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 291 (513)
+.|++..+.| +...+..|-..|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554432 33444444444444 444555555555444433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.001 Score=50.40 Aligned_cols=78 Identities=9% Similarity=-0.091 Sum_probs=45.7
Q ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010313 175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
|.+.|++..+..+.+...|..+...|...|++++|+..|++..+. .+.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555554445666666666666666666666666666543 123445566666666666666666666665553
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.0012 Score=64.34 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCCc-c-cH
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEH------KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGWR-L-CR 438 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~-p-~~ 438 (513)
.|...|...|++++|+.++++.++- ...|....+++.|...|...|++++|+.++++..+ .|.. | ..
T Consensus 356 nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 356 IASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 4667777777777777777665541 23444566788999999999999999999887643 3322 2 24
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 439 SLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.+.+.+-.++...+.+++|+.+|..+++
T Consensus 436 ~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 436 DLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999998876
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.48 E-value=0.0016 Score=46.54 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010313 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
..+..+...+.+.|++++|.+.|++..+..+.+...|..+...+...|++++|++.|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34455555555566666666666655554444555555555666666666666666665554
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.0012 Score=49.94 Aligned_cols=79 Identities=11% Similarity=-0.140 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010313 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (513)
|+..++...+. .+.+...+..+...|.+.|++++|.+.|++..+..+.+...|..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566655543 24478899999999999999999999999999887778899999999999999999999999998
Q ss_pred HHh
Q 010313 217 KKE 219 (513)
Q Consensus 217 ~~~ 219 (513)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00091 Score=50.10 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010313 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
.|..+...+...|++++|++.|++..+. .+.+...|..+..++.+.|++++|+..|++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344444444444444444444444432 12233344444444444444444444444443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.32 E-value=0.0031 Score=45.01 Aligned_cols=82 Identities=9% Similarity=-0.005 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010313 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482 (513)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (513)
...+..+...+...|++++|...+++..+... .+...+..+...|.+.|++++|...|++..+.+ +-+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44566667777777888888888877765542 245666777777778888888888888777654 3355566666555
Q ss_pred HHhc
Q 010313 483 YATC 486 (513)
Q Consensus 483 ~~~~ 486 (513)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.30 E-value=0.00073 Score=53.97 Aligned_cols=85 Identities=11% Similarity=0.013 Sum_probs=58.8
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010313 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS----------DKCQSLFRDLKKEANISP-SIVTYNTLISV 235 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~g~~p-~~~~~~~li~~ 235 (513)
.+.+.+++|.+.++...+..+.+...|+.+..++...+++ ++|+..|++..+. .| +..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence 3556778888888888887777888888887777777664 4777777777753 33 45677777777
Q ss_pred HHhcC-----------ChhHHHHHHHHHHH
Q 010313 236 FGRLL-----------LVDHMEAAFQEIKD 254 (513)
Q Consensus 236 ~~~~g-----------~~~~A~~~~~~m~~ 254 (513)
|...| ++++|++.|++..+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 76654 55666666665555
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.013 Score=53.89 Aligned_cols=50 Identities=10% Similarity=-0.040 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 010313 152 TPMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLKTIGTYNALLGAYM 201 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 201 (513)
.+.+...|...+.+... .....+|..+|++..+..+.....|..+..+|.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34577777777766532 234578888888888877666666666555554
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.18 E-value=0.0017 Score=51.88 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=67.1
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010313 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV----------DHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
.+.+++++|++.++...+. -+-+...|+.+..++...+++ ++|+..|++.++.... +..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 4556778888888888765 245677888788888777664 4777778777775432 56677777777
Q ss_pred HHHcc-----------CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010313 271 YMTAW-----------MWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 271 ~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
|...| ++++|++.|++..+ +.|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 77654 67777777777666 4566555544443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.08 E-value=0.003 Score=46.42 Aligned_cols=67 Identities=4% Similarity=-0.007 Sum_probs=55.8
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010313 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
|.+...+..+...|...|++++|.+.|++..+.... +...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556777888999999999999999999998876633 5667888999999999999999999887653
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0057 Score=58.47 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=66.2
Q ss_pred hcCCHHHHHHHHHHHHhc-----C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCC-ccc-HhhHHHHH
Q 010313 379 KEDCLEEMEKSINDAFEH-----K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AGW-RLC-RSLYHSKM 445 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~li 445 (513)
..|++++|+.++++.++. | ..|....+++.|..+|...|++++|..++++..+ .|. .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999988876652 1 2234467788999999999999999999987643 231 233 45588889
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 010313 446 VMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~ 466 (513)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999887654
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.83 E-value=0.043 Score=57.49 Aligned_cols=46 Identities=4% Similarity=0.011 Sum_probs=23.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010313 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445555555554332 244555555555555555555555555543
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.75 E-value=0.0091 Score=57.11 Aligned_cols=93 Identities=6% Similarity=0.008 Sum_probs=71.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cC-Cccc-Hhh
Q 010313 374 IRVYAKEDCLEEMEKSINDAFEHK------TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-----AG-WRLC-RSL 440 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~-~~p~-~~~ 440 (513)
+..+...|++++|+.++++.++.. ..+....+++.+..+|...|++++|+.+++++.+ .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667789999999998887632 2233466789999999999999999999997753 22 2233 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 441 YHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999987664
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.074 Score=55.67 Aligned_cols=120 Identities=3% Similarity=-0.032 Sum_probs=76.4
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010313 198 GAYMYNGLSDKCQS-LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 198 ~~~~~~g~~~~A~~-~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.++-. .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 34456778888766 44221 112233677777888888888876663221 11234566788
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010313 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
+++|.++.+.+ .+...|..+...+.+.|+++.|+++|..+.. |..+...|...|+.+...
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 88888876544 3567888888888888888888888887655 334455555566555433
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0076 Score=57.60 Aligned_cols=87 Identities=6% Similarity=-0.011 Sum_probs=67.7
Q ss_pred hcCcHHHHHHHHHHHHhc---CCc---c-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 010313 415 RCNAVDKLANFVKRAESA---GWR---L-CRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDCS-KKTFWIMY 480 (513)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~---~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li 480 (513)
..|++++|+.++++..+. -+. | ...+++.|..+|...|++++|+.++++..+- | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999877531 122 2 2467899999999999999999999887652 2 1233 46788999
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 010313 481 YAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~m~~ 501 (513)
..|..+|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988643
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.52 E-value=0.013 Score=56.14 Aligned_cols=91 Identities=8% Similarity=-0.123 Sum_probs=71.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcC---Cc----ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 010313 410 VSSYFRCNAVDKLANFVKRAESAG---WR----LCRSLYHSKMVMYASQRRVEEMESVLKEMENY-----K-IDCS-KKT 475 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~~~---~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~ 475 (513)
+..+...|++++|.+++++..+.. +. ....+++.+...|...|++++|+.++++...- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999886431 11 23566899999999999999999999877642 2 1232 467
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 010313 476 FWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8899999999999999999998764
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.47 E-value=0.19 Score=46.12 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=95.7
Q ss_pred CCHhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--ChhHH---HHHHHHHH
Q 010313 188 KTIGTYNALLGAYMY--NG---LSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGR---LL--LVDHM---EAAFQEIK 253 (513)
Q Consensus 188 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~---~g--~~~~A---~~~~~~m~ 253 (513)
.+...|...+++... .+ ...+|+.+|++..+. .|+ ...|..+.-++.- .+ .-... ...++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 388899998877543 33 358999999999975 566 3455444444321 11 11111 11222211
Q ss_pred H-CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010313 254 D-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332 (513)
Q Consensus 254 ~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (513)
. .....+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1124577888888877777899999999999998854 88888888888999999999999999988886 35555
Q ss_pred HHH
Q 010313 333 LIR 335 (513)
Q Consensus 333 ~~~ 335 (513)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.45 E-value=0.19 Score=38.16 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010313 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (513)
.+..+...|+-++-.+++.++.. ..++.+..+-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444455555555555544322 2222333444455555555555555555555555444
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.29 E-value=0.068 Score=38.39 Aligned_cols=67 Identities=7% Similarity=-0.037 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHhcccCC---HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010313 153 PMTKEEYTKGIKFAGRINN---VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
+.|...+..+..++...++ .++|..+|++..+..+.++.....+...+.+.|++++|+..|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456666666666543333 577777777777766667777777777777777777777777777753
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.23 E-value=0.05 Score=39.28 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=46.0
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010313 162 GIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
....+.+.|++++|.+.|++..+..+.+.. .|..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566788888888888888877666777 8888888888888888888888888764
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.22 E-value=0.24 Score=37.66 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C----------------CcccHhhHH
Q 010313 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA-G----------------WRLCRSLYH 442 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~----------------~~p~~~~~~ 442 (513)
.|.+++..++..+..... +..-||-+|--....-+-+-..++++.+-+. . ...+...++
T Consensus 20 dG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd 95 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 95 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred hhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence 466666677776665532 2223444444444444444444444443210 0 012344567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010313 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
.-++.+..+|+-|+-.+++.++.. +.+|++...-.+..+|.+-|+..+|.+++.+.-+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 778888899999999999999754 34788899999999999999999999999999999975
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.15 E-value=0.014 Score=42.33 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=36.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010313 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 433 (513)
....+...|++++|++.|++.++.. |.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445566677777777777666632 33444 56666666667777777777777665544
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.95 E-value=0.058 Score=38.75 Aligned_cols=68 Identities=7% Similarity=-0.036 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010313 400 VTTVRIMRCIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
|.+...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+++.+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455566666666654444 57788888877765533 45566666777777888888888888887654
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.53 Score=38.06 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010313 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 3345566666666665554 2455666666666666666666666665531 223334444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010313 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
.-.++-+.....|- +|....++.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444433333321 44444455556666666666544
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.73 E-value=0.13 Score=45.25 Aligned_cols=110 Identities=6% Similarity=-0.033 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc-CCHH
Q 010313 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-----CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ-RRVE 455 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~ 455 (513)
....|...+++.++....-.+...|..+...|.. -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3566777777777744333356678888888888 489999999999988766433466677777788874 8899
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010313 456 EMESVLKEMENYKID--CSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
+|.+.+++....... |+....+.+-+ ++|..+++++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~ 295 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHh
Confidence 999999998887655 65444443332 4555555544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.65 E-value=0.087 Score=38.73 Aligned_cols=64 Identities=19% Similarity=0.070 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-------cCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANK-------HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+...+-.+...+.+.|+++.|...|+...+. +.....++..|..++.+.|++++|+..+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4555556666666777777777777665543 122455666666666666666666666666664
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.78 Score=37.08 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=20.8
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010313 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344455554444443 13444555555555555555555554443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.45 E-value=0.11 Score=40.91 Aligned_cols=79 Identities=11% Similarity=-0.107 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 010313 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRLLLVDHMEAA 248 (513)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~ 248 (513)
.+.+-|.+....+.++..+...+..++++++ +.++++.+|++..+. . .| +...+-.|.-++.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3334444433333344444444444445544 333555555554443 1 12 122333333444455555555555
Q ss_pred HHHHHH
Q 010313 249 FQEIKD 254 (513)
Q Consensus 249 ~~~m~~ 254 (513)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.31 E-value=0.12 Score=40.76 Aligned_cols=85 Identities=11% Similarity=0.018 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHH
Q 010313 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN---AVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 455 (513)
+.+..+.+.|.+....+. .+..+...+..++++++ +.+++..+++...+.. .| ....+-.+.-+|.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 456677777877766544 34555666888899988 6779999999988765 23 3455555677889999999
Q ss_pred HHHHHHHHHHhCC
Q 010313 456 EMESVLKEMENYK 468 (513)
Q Consensus 456 ~A~~~~~~m~~~~ 468 (513)
+|.+.++.+.+..
T Consensus 89 ~A~~y~~~lL~ie 101 (152)
T 1pc2_A 89 KALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998754
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.27 E-value=0.15 Score=39.62 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
++.++|.++|+.+....-+- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44444444444443321111 3344444444444555555555554444443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.26 E-value=0.23 Score=43.74 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-C
Q 010313 171 NVDLAADLFAEAANKHLK--TIGTYNALLGAYMY-----NGLSDKCQSLFRDLKKEANISP--SIVTYNTLISVFGRL-L 240 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~-g 240 (513)
....|+.++++..+..+. +...|..|...|.+ .|+.++|.+.|++..+- .| +..++......+++. |
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 457788888888887765 67789999999999 49999999999999874 56 378888888888885 9
Q ss_pred ChhHHHHHHHHHHHCCCC--CCHHHHHHH
Q 010313 241 LVDHMEAAFQEIKDSNLS--PNVFTYNYL 267 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~--p~~~~~~~l 267 (513)
+.+.+.+.+++....... |+....|.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999999987766 665544443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.77 E-value=0.18 Score=37.03 Aligned_cols=26 Identities=12% Similarity=0.048 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010313 298 TYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.+..+..++.+.|+++.|...+++..
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=3.5 Score=39.37 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcc-----CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 010313 170 NNVDLAADLFAEAANKH-----LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 224 (513)
|+++.|++.+-.+.+.. .+ +......++..|...|+++...+.+..+.+..|..+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk 90 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK 90 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence 67888888776665431 22 456677888888888998888888877765545433
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.34 E-value=2.2 Score=44.48 Aligned_cols=260 Identities=8% Similarity=-0.065 Sum_probs=120.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHcCC--CC-----CCHHHHHHHHHHH
Q 010313 236 FGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP--VM-----PDTNTYLLLLRGY 306 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~-----p~~~t~~~ll~~~ 306 (513)
....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++....... +. +....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4556677777777666553210112 2233333445556666566777666654321 00 1111122222222
Q ss_pred HhcCC-hHHHHHHHHHHHhccCCCcHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010313 307 AHSGN-LPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383 (513)
Q Consensus 307 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 383 (513)
+..|. -+++.+.+..+..... ....... +|...+...|+-+-...++..+.+-...++. . ...+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vr-R-~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNIT-R-GLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHH-H-HHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHH-H-HHHHHHHhhhCCCh
Confidence 22332 2344555555444211 1111112 2233344556665555555555442211111 1 11233344456777
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010313 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
+.+..+++.+............-.++.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 77777766665532111111112234456677778777777877776533 22333333333344445665556666655
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 010313 464 MENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMC 500 (513)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 500 (513)
+.+.+ .|...--..+.-+....|+. .+|.+++..+.
T Consensus 620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55443 44444444455555555554 45666666654
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.30 E-value=3 Score=43.46 Aligned_cols=258 Identities=9% Similarity=-0.033 Sum_probs=139.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHH
Q 010313 199 AYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLISVFGRLLLVDHMEAAFQEIKDSNL--S-----PNVFTYNYLIA 269 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~li~ 269 (513)
+....|+.++++.+++.-... +-..+.. .-..+.-+....|.-+++..++.+.....- . +....-.++--
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~-~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPG-SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTT-SCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 355567777776666554421 1012322 223344455666666678887777654311 0 11222233333
Q ss_pred HHHHccC-HHHHHHHHHHHHcCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH--HH
Q 010313 270 GYMTAWM-WGKVEEIYQMMKAGPVMPDTNT--YL--LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA--YS 342 (513)
Q Consensus 270 ~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~ 342 (513)
+++-.|. -+++.+.+..+.... +..+ .. .|...++..|+-+....++..+.+.. +..+...+..+ +.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3433443 246666666665532 2211 22 23333456678777778887766532 23333334444 44
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHH
Q 010313 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422 (513)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 422 (513)
..|+.+.+..+.+.+.....+......-..+..+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHH
Confidence 6788888888888887654332222111135567788889877777888777642 22343333333355556766667
Q ss_pred HHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010313 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLKEMEN 466 (513)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 466 (513)
.++++.+.+.+ .|.+..-.++.-+....|.. .+|..++..+..
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77776655544 45555545555555555443 577888888764
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.85 E-value=1.9 Score=33.57 Aligned_cols=104 Identities=8% Similarity=-0.018 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHhcccCCH------HHHHHHHHHHHhccCCC-HhHHHHHHHH------HHHcCChHHHHHHHHHHHHhC
Q 010313 154 MTKEEYTKGIKFAGRINNV------DLAADLFAEAANKHLKT-IGTYNALLGA------YMYNGLSDKCQSLFRDLKKEA 220 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~-~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~~ 220 (513)
-|..+|-..+..+-+.|+. ++.+++|++....-+|+ -..|..-|.. +...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 3666666666666666776 67777777766644432 1111111111 12236778888888877653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010313 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 259 (513)
+-+- ...|......=.+.|++..|.+++......+.+|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2222 5566666666677788888888887777766553
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.80 E-value=1.5 Score=33.19 Aligned_cols=94 Identities=11% Similarity=0.008 Sum_probs=61.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcCCc-ccHhhHHHHHHHH
Q 010313 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK---LANFVKRAESAGWR-LCRSLYHSKMVMY 448 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~-p~~~~~~~li~~~ 448 (513)
++........+..+.+-|.+....+. +. ..+--.+..++.++.+... ++.+++.+...+.+ -.....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s-~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VS-KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CC-HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-Cc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34444455566677777776666544 33 3334457778888876665 88888888765421 1333344566788
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 010313 449 ASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~ 468 (513)
.+.|++++|.+.++.+.+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 89999999999999988753
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.53 E-value=1.8e-05 Score=73.95 Aligned_cols=265 Identities=11% Similarity=0.087 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
.+.+|..|..+..+.+++.+|++.|-+. .|+..|..+|.+..+.|++++-+..+.-.++. .-+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence 3446777777777777777765544221 26667778888888888888887777655543 234445567888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
+|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 8888887666433321 25555566677777777877777777765543 2233334455555555
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010313 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 393 (513)
|.+.- . ...+..||..+-.+|...+.+.-|.-+ +.+. ...+... .++..|-..|.+++.+.+++..
T Consensus 189 AVdaA---r---KAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhadeL~----elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 189 AVDGA---R---KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELE----ELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp STTTT---T---TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSCCS----GGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHH---H---hcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHHHH----HHHHHHHhCCCHHHHHHHHHHH
Confidence 43321 1 223556677777777777766655433 2221 1122111 2566677778888877777766
Q ss_pred HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCc------ccHhhHHHHHHHHHhcCCHHHHHH
Q 010313 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWR------LCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~------p~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
+. .......+|+-|.-.|++- +.++.++.++..- +.+++ -....|.-++-.|++-.++|.|..
T Consensus 256 lg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 256 LG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 53 4444567777777777665 3344444333211 11111 123446777777777777776643
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.33 E-value=0.58 Score=43.89 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 010313 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD-----SNLSPNVFTYN 265 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 265 (513)
+...++..+...|++++|+..+..+... .+-+...|..+|.++.+.|+..+|++.|+++.+ .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4556777788888888888888888764 355778888889999999999988888887653 48888876644
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.29 E-value=2.8 Score=31.61 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc----cchHHHHHHHHHhcCCHHHHH
Q 010313 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR----PWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~ 387 (513)
+..+.+-|......|. ++..+-..+..++.+........+.+.++.+....+.. ...| .+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY-~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF-YLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH-HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHhhhHHHHH
Confidence 3344444544444433 55555556777777777777766666666665554311 1113 3677778888888888
Q ss_pred HHHHHHHhcCC
Q 010313 388 KSINDAFEHKT 398 (513)
Q Consensus 388 ~~~~~~~~~~~ 398 (513)
+.++.+++..+
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 88888777443
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.15 E-value=2.6 Score=45.85 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=61.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010313 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
|..++..+-+.|.++.+.++-+...+..-.-+ ...|..+.+++...|++++|...+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 56666666666776666666555443211111 12456666777777777777666655544322 2333444555
Q ss_pred HHHhcCC------------hhHHHHHHHHHH-hCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010313 340 AYSKCSV------------TDRIKKIEALMR-LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 340 ~~~~~g~------------~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
.+|..|. .+..++++.... ........+.+|..|=..+...|++.+|-.++
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 4444433 233333332211 11111112223545555566667766655543
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.71 E-value=4.5 Score=43.96 Aligned_cols=130 Identities=8% Similarity=0.054 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010313 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKT-SVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 370 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 446 (513)
|.-++..+-+.+.++.+.++-+..++... ..+ ....|..+..++...|++++|...+-.+.....+ ......||.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 44567777777888888777666554322 121 1235777888888888888888888776554433 344566666
Q ss_pred HHHhcCCHH------------HHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHhHHHHH-HHHHHH
Q 010313 447 MYASQRRVE------------EMESVLKEMEN-Y-KIDCSKKTFWIMYYAYATCGQRRKVNQV-LGLMCK 501 (513)
Q Consensus 447 ~~~~~g~~~------------~A~~~~~~m~~-~-~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~ 501 (513)
.+|..|..+ +..+++..-.+ . .+...+.-|..|-.-+...|++..|..+ |+...+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 666555544 33444432211 1 1111223456666667777887665554 555543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.87 E-value=0.9 Score=42.58 Aligned_cols=68 Identities=9% Similarity=0.119 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 010313 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN-----YKIDCSKK 474 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~ 474 (513)
...++..+...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|+.+.+ .|+.|+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3344445555555555555555554332 22444555555555555555555555554433 25555544
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.81 E-value=3.1 Score=29.71 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010313 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
..++-..|...-+..+.|++.+..+.+++|-|.+++..|.++|+-++.+-.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33444444444455567777777777777777777777777777776543333345555554
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.78 E-value=2.6 Score=42.90 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=44.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010313 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.+.+...|+++-|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345567899999999999887653 445789999999999999999999888876
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.46 E-value=13 Score=34.48 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcccHhhHH---
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYH--- 442 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~--- 442 (513)
-++..|...|++.+|.+++.++.+.- ....-..++..-+..|...+++.++...+...... .+.+++.+-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 46777778888888877777666521 11123445556667777788888888777766422 1212222211
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHH
Q 010313 443 -SKMVMYA-SQRRVEEMESVLKEM 464 (513)
Q Consensus 443 -~li~~~~-~~g~~~~A~~~~~~m 464 (513)
+-...+. ..++|..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122334 677787777766554
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.13 E-value=2 Score=43.84 Aligned_cols=60 Identities=7% Similarity=-0.063 Sum_probs=44.6
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHhHHHHHHHH
Q 010313 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG---------QRRKVNQVLGL 498 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~ 498 (513)
+..-|..|.....+.+++++|.+.|+..... +-+...+.-|+..|.+.+ +.+..+.+.-+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ik 680 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIK 680 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHH
Confidence 3334888888888889999999999888864 467888888999998876 55555554433
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.58 E-value=3.2 Score=29.70 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010313 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
.-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.... ....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 335556666666667777777777778888888888778777777665422 22334554443
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.02 E-value=23 Score=35.32 Aligned_cols=116 Identities=9% Similarity=0.025 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010313 382 CLEEMEKSINDAFEHKTSVTT--VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
+.+.|...+..........+. ......+.......+...++...+....... .+.......+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 567777777666543322111 1112222223333342344444555433322 222233344444456677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010313 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.|+.|..... ....-.--+.+++...|+.++|..+|+++.
T Consensus 307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777765321 122223345556677777777777777654
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.97 E-value=5.3 Score=30.31 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010313 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
..++-..|...-+..+.|++.+....+++|-+.+++..|.++|+-++.+-.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34444445444455577788888888888888888888888888777653333445655554
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.82 E-value=4.1 Score=32.37 Aligned_cols=114 Identities=5% Similarity=-0.151 Sum_probs=61.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcc--CCC-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010313 161 KGIKFAGRINNVDLAADLFAEAANKH--LKT-------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYN 230 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~ 230 (513)
.-+..+...|.++.|+-+.+.+.... .++ ..++..+..++...|++.+|...|++..+....-+.. .++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34666778888888887777654321 112 2366777788899999999999999864431211211 1111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010313 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
.+- ....... ......+...---+-.||.+.|++++|+.+++.+
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 110 0000000 0011223344344666777777888887777664
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.68 E-value=0.015 Score=54.93 Aligned_cols=185 Identities=10% Similarity=0.079 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|+..|..+|.+..+.|.+++-...+...+ ...++..+=+.|+-+|++.++..+-.+++ . .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~~IDteLi~ayAk~~rL~elEefl----~----~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCSTTTTHHHHHHHHTSCSSSTTTSTT----S----CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccHHHHHHHHHhhCcHHHHHHHH----c----CCCcccHHHHHH
Confidence 56667777888778888777777666443 33445556677788888877765543322 1 356555666677
Q ss_pred HHHhcCChhHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSN--------------------LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
-|...|.++.|.-+|..+.... -.-++.||-.+-.+|...+++.-|.-.--.+.-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 7777777777766665543211 1236678888888898888887765544444321 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010313 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
| -...++.-|-..|-+++-+.+++.-... -.....+|+.|.-.|+|-. .++..+-++
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKlmEHlk 286 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLE 286 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 1 1234556678888898888888876642 2357888999999999874 444333333
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.59 E-value=11 Score=28.59 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010313 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
-+..+-++.+....+.|+.......+++|-+.+++..|.++|+-++... .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3555666666677788898899999999999999999999988877653 233445665543
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.41 E-value=16 Score=27.80 Aligned_cols=60 Identities=2% Similarity=-0.168 Sum_probs=40.7
Q ss_pred HHHHHHHhcCc---HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010313 408 CIVSSYFRCNA---VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 408 ~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
....++.++.+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35556666654 4457778887776553223444556667888888888888888888764
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.31 E-value=38 Score=32.17 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCccc--HhhH
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHK-TSVT---TVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLC--RSLY 441 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~ 441 (513)
.|...|...|++.+|.+++.++...- ...+ -...+...++.|...+++..|..+++++.. ....|+ ...|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 57888999999999999998876421 1111 245677788899999999999999998742 222232 3446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 442 HSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
...+..+...+++.+|...|.+..+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7778888899999999988887754
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.50 E-value=39 Score=31.85 Aligned_cols=95 Identities=17% Similarity=0.098 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cCCcccHhh--HHHHH
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTS-VTTVRIMRCIVSSYFRCNAVDKLANFVKRAES---AGWRLCRSL--YHSKM 445 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~--~~~li 445 (513)
.+...|.+.|++++|.+.+.++...... .....++-.+++.+...+++..+...+.++.. .+-.++... ...-.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 5888889999999999999888764222 23456677888889999999999998888743 232232221 11111
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 010313 446 VMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~ 466 (513)
..+...+++.+|...|-+...
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhc
Confidence 223467889999888877654
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.41 E-value=13 Score=30.60 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010313 419 VDKLANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
..++.++|..|...|+.-. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555544443322 2334444445555555555555555555554444
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.23 E-value=17 Score=27.57 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=36.6
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010313 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY---RPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
..|+..+--.+..++.+..+.+...+.+.++.++-..+. ....| .+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LY-yLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLY-YLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334555545555666666655555555544444332221 11112 3666667777777777777766663
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.01 E-value=19 Score=28.62 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010313 474 KTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..---+..+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 33345778888999999999888754
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.54 E-value=17 Score=25.94 Aligned_cols=79 Identities=6% Similarity=-0.074 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010313 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (513)
.+.++|..|-+.+... |. ...+--+-+..+...|++++|..+.+.+. .||...|-.|-. .+.|..+++..-
T Consensus 21 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 4567787777777754 21 22222233455677888888888777665 478888877654 356777777777
Q ss_pred HHHHHcCC
Q 010313 284 YQMMKAGP 291 (513)
Q Consensus 284 ~~~m~~~g 291 (513)
+..+...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 76776655
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.33 E-value=16 Score=25.97 Aligned_cols=79 Identities=8% Similarity=-0.085 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 010313 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (513)
.+.++|..|-+.+... |. ...+--+-+..+...|++++|..+.+.+. .||...|-.|-. .+.|..+++..-
T Consensus 20 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3567777777777754 21 22222233455677888888887776654 578887776654 367777777777
Q ss_pred HHHHHcCC
Q 010313 284 YQMMKAGP 291 (513)
Q Consensus 284 ~~~m~~~g 291 (513)
+..+...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 76776665
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.32 E-value=9.9 Score=32.96 Aligned_cols=116 Identities=5% Similarity=-0.069 Sum_probs=69.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cccHhhHHHHHHHHHhcC
Q 010313 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW--RLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g 452 (513)
....+.|.+++|++...+-++.. |.+...=..++..+|-.|++++|.+-++...+... .|...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 34567788888888887777743 45555566788888889999998888887765432 2233344444432
Q ss_pred CHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCCHhHHHHHHHHHHHC
Q 010313 453 RVEEMESVLKEMENYKIDC-----SKKTFWIMYYAYA--TCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 502 (513)
+..=.++..-+-.| ...-...++.+.. ..|+.++|.++-.+..+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333222121 2222335555543 568888888887777543
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.82 E-value=45 Score=30.03 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 010313 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373 (513)
Q Consensus 294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (513)
-|......+...|.+.+++.+|+..|- .|..+....|..++.-+.+.+...++.-. .+..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlf----------------iaRa 193 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLY----------------CARA 193 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHH----------------HHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHH----------------HHHH
Confidence 467777788888888888888877762 23333335665555544444322211110 1124
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 010313 374 IRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~ 394 (513)
+--|...++...|...++...
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 445666778888877665544
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.94 E-value=34 Score=28.17 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010313 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 438 (513)
.+...++.++|..|..++........|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34467899999999998888777888988899999999999999999998888888743
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.82 E-value=46 Score=29.67 Aligned_cols=187 Identities=7% Similarity=-0.059 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH----
Q 010313 172 VDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM---- 245 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A---- 245 (513)
+++.+.-++.-.+.|-- -...|.++..-|.+.+++++|++++..--.. +.+.|+...|
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~----------------ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALS----------------FLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------HHHCCCcchHHHHH
Confidence 34444444443333321 2345666777788888888888887654321 3334554333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHc----CC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010313 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG-KVEEIYQMMKA----GP--VMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
.-+.+-..+.++++|......++..+.....-+ .=.++++++.+ .| -.-|......+...|.+.|++.+|+..
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 334555566677777777777777665533211 12333344332 22 224778888899999999999988876
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010313 319 YELVKHHVDGKEFPLIRAMICAYSKC---SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
|-. |...+...+..++.-+.+. |...++.-. ....+-.|...++...|..+|+...
T Consensus 157 ~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf----------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 157 FML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF----------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH----------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH----------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 631 1111344555554444443 433222110 1123444566788888888877654
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.74 E-value=30 Score=31.59 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCcc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLANFVKRAESAGWRL 436 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p 436 (513)
.++.-|...|+.++|.+.++++.... .....+..++..++-+.+ ..+...+++..+...|+-.
T Consensus 222 ~lL~EY~~s~D~~EA~~ci~EL~~p~--fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 222 MLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCTT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHhccCCCHHHHHHHHHHccCCc--chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 47888888899999999988875421 112334445555555543 3455777777777666543
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.76 E-value=32 Score=32.48 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH----H
Q 010313 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD---SNLSPNVF----T 263 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~----~ 263 (513)
++..+...|.+.|++++|.++|.++.... +..--...+-.+|..+...+++..|...+++... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556666666666666666666665431 1112234555566666666666666666655542 22222211 1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010313 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
|..+ .+...+++.+|-+.|-+...
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhc
Confidence 1111 12235667777666666543
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.33 E-value=65 Score=29.86 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=84.6
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHH-
Q 010313 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI---VTYNTLISVFGRL-LLVDHMEAAFQEIKDSNLSPNVFTY- 264 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~- 264 (513)
......|...|.+.|+.++..+++...+.-.+.-|-. .....+++.+... +..+.-.++..+..+..- -+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3566778889999999999999988876433323332 2456777777664 334444555555543211 011223
Q ss_pred -----HHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010313 265 -----NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-----TNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 265 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.-+...|...|++.+|.+++.++.+.--+.| ...|..-++.|...+++..+...+.....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2467788888888888888887766311111 34556667777888888888888877654
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.77 E-value=22 Score=27.76 Aligned_cols=51 Identities=4% Similarity=0.016 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010313 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 436 (513)
+.++|..|..++........|......+...|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555555554445555555555555566666666555555555444
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.20 E-value=7.2 Score=33.97 Aligned_cols=88 Identities=8% Similarity=0.132 Sum_probs=45.2
Q ss_pred HhcCcHHHHHHHHHHHHhcCCcccHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 010313 414 FRCNAVDKLANFVKRAESAGWRLCRSL--YHSKMVMYASQRRVEEMESVLKEMENYKIDCSK---KTFWIMYYAYATCGQ 488 (513)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~ 488 (513)
+..++.....++++.+.+.|..++... -.+.+...++.|+.+-+..+++. .|..++. .-. +.+...++.|+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~-t~l~~A~~~~~ 265 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGK-TALLLAVELKL 265 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSC-CHHHHHHHTTC
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCC-cHHHHHHHcCc
Confidence 345554444566666666776654321 12334455667777655555542 3333321 111 23344445566
Q ss_pred HhHHHHHHHHHHHCCCCCCCC
Q 010313 489 RRKVNQVLGLMCKNGYDVPVN 509 (513)
Q Consensus 489 ~~~A~~~~~~m~~~g~~p~~~ 509 (513)
. ++.+.+.+.|..|+..
T Consensus 266 ~----~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 266 K----KIAELLCKRGASTDCG 282 (285)
T ss_dssp H----HHHHHHHHHSSCSCCS
T ss_pred H----HHHHHHHHcCCCCCcc
Confidence 5 3455566677777654
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.22 E-value=33 Score=31.30 Aligned_cols=77 Identities=10% Similarity=0.147 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010313 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR--VEEMESVLKEMENYKIDCSKKTFWIMYYAY 483 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (513)
.+.++.-|...|+.++|.+.++++....+.+ ...+..+..++-+.++ .+...+++..+...|+-........+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 5678888999999999999999987543332 3334555556665443 456888888888888665444433443333
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.10 E-value=39 Score=26.00 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010313 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY---RPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
.++..+--.+..++.+....+...+.+.++.++-..+. ....| .+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLY-yLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLY-YLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHH-HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34444444555566666555555555544444322111 11112 3666777777777777777777764
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.99 E-value=17 Score=28.88 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010313 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 422 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
..++|..|...|+--. ...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4556666655554332 33455555566666777777777766666665553
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.70 E-value=48 Score=27.63 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=14.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010313 268 IAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
+...++.|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 334445566666666665555544443
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.40 E-value=22 Score=27.81 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010313 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 422 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
+.++|..|...|+--. ...|......+...|++++|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 7788888877665433 4557777777888899999999988888877777
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.21 E-value=38 Score=24.16 Aligned_cols=85 Identities=12% Similarity=-0.073 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010313 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 461 (513)
+.++|.-|-+-+...+. . ..+-..-+..+.+.|++++|..+.+.. .-||...|-.| +-.+.|-.+.+..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--E-EAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--H-HHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 56677666555544433 1 211122234556677777777766542 35666655544 334667777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 010313 462 KEMENYKIDCSKKTF 476 (513)
Q Consensus 462 ~~m~~~~~~p~~~~~ 476 (513)
.++..+| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6777666 4444443
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.53 E-value=38 Score=24.16 Aligned_cols=85 Identities=11% Similarity=-0.067 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHH
Q 010313 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 461 (513)
+.++|.-|-+-+...+. . ..+-..-+..+.+.|++++|..+.+. ..-||...|-.| +-.+.|-.+.+..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~-E~v~lIR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--D-EAARLIRISSLANQGRYQEALAFAHG----NPWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHHHTTCHHHHHGGGTT----CCCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--H-HHHHHHHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 56677666655554433 1 21122223455667777777766653 235666665544 344677777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 010313 462 KEMENYKIDCSKKTF 476 (513)
Q Consensus 462 ~~m~~~~~~p~~~~~ 476 (513)
.++..+| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777666 4444444
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.62 E-value=33 Score=29.57 Aligned_cols=91 Identities=7% Similarity=-0.064 Sum_probs=46.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 010313 411 SSYFRCNAVDKLANFVKRAESAGWRLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT--FWIMYYAYAT 485 (513)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~ 485 (513)
...+..|+.+-+..+++. .|..++ ....+.+. ..+..++.....++++.+.+.|..++... -.+.+...++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 334456776655554442 143332 22223333 33445665555667777777776554321 1234455566
Q ss_pred cCCHhHHHHHHHHHHH-CCCCCCCC
Q 010313 486 CGQRRKVNQVLGLMCK-NGYDVPVN 509 (513)
Q Consensus 486 ~g~~~~A~~~~~~m~~-~g~~p~~~ 509 (513)
.|+.+-+ +.+.+ .|..++..
T Consensus 229 ~~~~~~v----~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 229 KKHLGLV----QRLLEQEHIEINDT 249 (285)
T ss_dssp TTCHHHH----HHHHHSSSCCTTCC
T ss_pred cCCHHHH----HHHHhccCCCcccc
Confidence 6776544 44444 56666544
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.54 E-value=29 Score=29.09 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010313 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 422 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
..++|..|...|+.-. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444333221 2234444444445555555555555444444444
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=60.52 E-value=42 Score=31.47 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=3.8
Q ss_pred HhcCCHHHH
Q 010313 378 AKEDCLEEM 386 (513)
Q Consensus 378 ~~~~~~~~a 386 (513)
+..|+.+-+
T Consensus 286 ~~~~~~~~~ 294 (437)
T 1n11_A 286 AQEGHVPVA 294 (437)
T ss_dssp HHHTCHHHH
T ss_pred HHcCCHHHH
Confidence 344444433
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.00 E-value=34 Score=27.11 Aligned_cols=56 Identities=7% Similarity=-0.036 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010313 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 439 (513)
+.+.++|..|..++........|......+...|++.+|.++|..-++.+-.|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34677888888888777777788888888889999999999999988888887543
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=57.04 E-value=38 Score=31.73 Aligned_cols=311 Identities=13% Similarity=0.076 Sum_probs=137.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh
Q 010313 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLISVFGR 238 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~~~~~ 238 (513)
..+...++.|+.+-+..+++.-..-+..+..-+ +.+...+..|+.+- ++.+.+. |..++.. .-.+.+...++
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~----v~~Ll~~-ga~~~~~~~~g~t~L~~A~~ 122 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNM----VKLLLEN-NANPNLATTAGHTPLHIAAR 122 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHH----HHHHHHH-TCCTTCCCTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHH----HHHHHhC-CCCCCCCCCCCCcHHHHHHH
Confidence 345555677887766666654222111222222 33444556677643 3344443 5444422 11234455566
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHhcCChHHHH
Q 010313 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN--TYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~ 316 (513)
.|+.+.+..+++.-..... .+..-++ .+...+..|+.+-+. .+.+.|..++.. .-.+.+...+..|+.+
T Consensus 123 ~g~~~~v~~Ll~~~~~~~~-~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 193 (437)
T 1n11_A 123 EGHVETVLALLEKEASQAC-MTKKGFT-PLHVAAKYGKVRVAE----LLLERDAHPNAAGKNGLTPLHVAVHHNNLD--- 193 (437)
T ss_dssp HTCHHHHHHHHHTTCCSCC-CCTTSCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCSSCCCHHHHHHHTTCHH---
T ss_pred cCCHHHHHHHHhCCCCCcC-CCCCCCC-HHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHH---
Confidence 7777666655543211111 1222222 344445667765444 344445444321 1112334445667654
Q ss_pred HHHHHHHhccCCCcHH---HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010313 317 KIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 393 (513)
+++.+.+.|..++.. -++ .+...+..|+.+-++..++.-......+.... ..+...+..|+.+-...++
T Consensus 194 -~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~---t~L~~A~~~g~~~~v~~Ll--- 265 (437)
T 1n11_A 194 -IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQYGGSANAESVQGV---TPLHLAAQEGHAEMVALLL--- 265 (437)
T ss_dssp -HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC---CHHHHHHHTTCHHHHHHHH---
T ss_pred -HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC---CHHHHHHHCCCHHHHHHHH---
Confidence 344444555443321 122 23344556665533322221111111122222 1344455667766554444
Q ss_pred HhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010313 394 FEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---LYHSKMVMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 394 ~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
+.+..+. +..-.+ .+...+..|+.+-+..++ +.|..++.. ..+. +...+..|+.+-+..+ .+.|
T Consensus 266 -~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~g 334 (437)
T 1n11_A 266 -SKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTP-LHVASHYGNIKLVKFL----LQHQ 334 (437)
T ss_dssp -TTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHH----HHTT
T ss_pred -hcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCH-HHHHHHcCcHHHHHHH----HhcC
Confidence 3222111 111111 233344566665444443 345444321 2223 3445566776544444 4445
Q ss_pred CCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCC
Q 010313 469 IDCSKK---TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510 (513)
Q Consensus 469 ~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 510 (513)
..++.. -++ -+...++.|+. ++.+.+.+.|..|+...
T Consensus 335 ad~n~~~~~g~t-~L~~A~~~g~~----~iv~~Ll~~ga~~~~~~ 374 (437)
T 1n11_A 335 ADVNAKTKLGYS-PLHQAAQQGHT----DIVTLLLKNGASPNEVS 374 (437)
T ss_dssp CCTTCCCTTSCC-HHHHHHHTTCH----HHHHHHHHTTCCSCCCC
T ss_pred CCCCCCCCCCCC-HHHHHHHCChH----HHHHHHHHCcCCCCCCC
Confidence 444322 222 33344456665 45566667888887643
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.53 E-value=99 Score=26.19 Aligned_cols=28 Identities=0% Similarity=-0.019 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010313 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
.+...-...+..+.+.|+.++|.++|=+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3445555555666666777777666644
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.19 E-value=1.1e+02 Score=26.44 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=33.6
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010313 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.+.|++++|++....-.+..+.|...-..++..+|-.|++++|..-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666666665555555666666666666666666666666665554
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.89 E-value=43 Score=29.20 Aligned_cols=213 Identities=8% Similarity=-0.012 Sum_probs=93.5
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010313 239 LLLVDHMEAAFQEIKDSNL-SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
..+..+..+++.. .++ ..|..-++ .+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHS-ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCC-HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 3445555555543 222 12333333 3444556777766555544 3433332212334445566777665544
Q ss_pred HHHHHHhccCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010313 318 IYELVKHHVDGKE---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 318 ~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
++ +.|..++ ..-++. +...+..|+.+-++..++.-......+...+ . ..+...+..|+.+-+..+ +
T Consensus 81 Ll----~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-~-t~L~~A~~~~~~~~v~~L----l 149 (285)
T 3kea_A 81 LL----FSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW-K-TSFYHAVMLNDVSIVSYF----L 149 (285)
T ss_dssp HH----HTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGG-G-SHHHHHHHTTCHHHHHHH----H
T ss_pred HH----HCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCccCCCCC-C-CHHHHHHHcCCHHHHHHH----H
Confidence 44 3444332 222223 3334456665543333322111111222221 1 234445566776554443 3
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010313 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
+.+....+...-...+...+..|+.+-+..+++.-...... +..-++..+...+..|+. ++++.+.+.|..++..
T Consensus 150 ~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 150 SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp TTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred hCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 43333322201223344556677777666655543222211 222223333444555654 3445556667666654
Q ss_pred H
Q 010313 475 T 475 (513)
Q Consensus 475 ~ 475 (513)
.
T Consensus 225 ~ 225 (285)
T 3kea_A 225 N 225 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.58 E-value=20 Score=30.07 Aligned_cols=55 Identities=5% Similarity=-0.008 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 010313 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 437 (513)
.+.+.++|..|..++........|......+...|++.+|.++|+.-++.+-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4677889999999888877788888888889999999999999998888887773
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.05 E-value=99 Score=25.14 Aligned_cols=153 Identities=10% Similarity=-0.080 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|...-...+..+++.|..+....+.+ +... ++...-...+.++.+.+.. ++...+.++.. .+|...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~--~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIK-ALKD--EDAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC--SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHH-HHcC--CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHH
Confidence 44444455555555555332222222 2222 2444555556666666653 33444444443 366667677777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
++.+.|+.+. ...+.++.+ .++..+-...+.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.+. .+
T Consensus 104 aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 7777776543 334444443 367767777777777776643 4444444443 3566666677777777765 34
Q ss_pred HHHHHHHHHh
Q 010313 315 MEKIYELVKH 324 (513)
Q Consensus 315 a~~~~~~~~~ 324 (513)
+...+..+.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=50.49 E-value=1.4e+02 Score=26.82 Aligned_cols=135 Identities=9% Similarity=0.025 Sum_probs=80.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL----FRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~g~~p~~~~~~~li 233 (513)
+|.++..-|.+.+++++|++++-.-.. .+.+.|+...|-++ .+...+. ++++|.....-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~--------------~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ--------------TLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH--------------HHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 455666667888888888887665332 24445555444333 3444443 6777777777777
Q ss_pred HHHHhcCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010313 234 SVFGRLLLVD-HMEAAFQEIKD----SN--LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 234 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
..+.....-+ .=..+.+++.+ .| ..-|......+...|.+.+++.+|..-| +. |-.++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHH
Confidence 7766655322 11233444432 22 3346777788889999999999998877 22 3334446776666555
Q ss_pred HhcCC
Q 010313 307 AHSGN 311 (513)
Q Consensus 307 ~~~g~ 311 (513)
...+.
T Consensus 178 ~~~~~ 182 (336)
T 3lpz_A 178 YKQDE 182 (336)
T ss_dssp HHTSC
T ss_pred HHhcC
Confidence 54443
No 288
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.25 E-value=1.4e+02 Score=26.60 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcCCcccHhhHHHHH
Q 010313 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC---NAVDKLANFVKRAESAGWRLCRSLYHSKM 445 (513)
Q Consensus 369 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~li 445 (513)
....+...|.+.|++.+|...|- . +. ..+...+..++.-+... |...++--++. -.+
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~i--~--~~-~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~---------------RaV 195 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYFM--L--GT-HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS---------------RLV 195 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--T--SC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHH--h--CC-CccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------HHH
Confidence 34567888888888888887662 1 11 11234455554444333 33333211111 112
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 010313 446 VMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~ 465 (513)
--|.-.|+...|..+|+...
T Consensus 196 L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 23455778888888887664
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.73 E-value=20 Score=31.44 Aligned_cols=227 Identities=8% Similarity=-0.052 Sum_probs=109.6
Q ss_pred cCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010313 203 NGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
..+.++..+++.. . ++ ..|..-+ +.+...+..|+.+-+..+++. |..++..--.+.+...+..|+.+-+.
T Consensus 9 ~~~~~~v~~lL~~---~-~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 9 TWKSKQLKSFLSS---K-DTFKADVHGH-SASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GCCHHHHHHHHHS---T-TTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred hcCHHHHHHHHHh---C-CCCccCCCCC-CHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 3445555555532 1 22 2333333 345555677887766655544 43333221233455556677766554
Q ss_pred HHHHHHHcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcH---HHHHHHHHHHHhcCChhHHHHHHH
Q 010313 282 EIYQMMKAGPVMPD---TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF---PLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 282 ~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
.+ .+.|..++ ..-++. +...+..|+.+-+..+++. |..++. .-+.+.+...+..|+.+ +.+
T Consensus 80 ~L----l~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~ 146 (285)
T 3kea_A 80 IL----LFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVS 146 (285)
T ss_dssp HH----HHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHH
T ss_pred HH----HHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHH
Confidence 44 44565443 222233 3444567777665555544 333222 12123444455666655 334
Q ss_pred HHHhCCCCCccc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010313 356 LMRLIPEKEYRP-WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (513)
.+.+........ ... ..+...+..|+.+-+.-+++.-.......... .+..+...+..|+. ++.+.+.+.|.
T Consensus 147 ~Ll~~g~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g--~t~~L~~A~~~~~~----~~v~~Ll~~ga 219 (285)
T 3kea_A 147 YFLSEIPSTFDLAILL-SCIHITIKNGHVDMMILLLDYMTSTNTNNSLL--FIPDIKLAIDNKDI----EMLQALFKYDI 219 (285)
T ss_dssp HHHTTSCTTCCCSTHH-HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCB--CCTTHHHHHHHTCH----HHHHHHTTSCB
T ss_pred HHHhCCCccccccCCc-cHHHHHHHcChHHHHHHHHHcCCCCCcccCCC--CChHHHHHHHcCCH----HHHHHHHHcCC
Confidence 444333222121 212 35566677888887777776644422211111 12223334455664 45555666788
Q ss_pred cccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010313 435 RLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 435 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
.++..... -+..|+.+-+.-+++.
T Consensus 220 d~~~~~~~-----a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 220 NIYSANLE-----NVLLDDAEIAKMIIEK 243 (285)
T ss_dssp CSTTTTGG-----GGTTTCHHHHHHHHHH
T ss_pred CCCCCChh-----hhhcCCHHHHHHHHHc
Confidence 77765421 1345665555544443
No 290
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=48.29 E-value=1e+02 Score=25.77 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010313 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
+.+..+++.+.+.|...|.......+....+
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~ 123 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMIN 123 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4455666666666666666555555555544
No 291
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=47.67 E-value=1.1e+02 Score=24.57 Aligned_cols=31 Identities=3% Similarity=-0.094 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010313 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
.+..+++.+.+.|...|......++....+.
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~ 81 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNT 81 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 4455666666666665655555555555443
No 292
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.11 E-value=56 Score=25.78 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=18.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcC
Q 010313 268 IAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g 310 (513)
+..+...+..-.|.++++.+.+. +...+..|.---++.+...|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33333333444444444444443 33334444444444444444
No 293
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.73 E-value=68 Score=21.49 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010313 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (513)
.+.++++.+.+.+...+..|..-.+..+.+
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 344444444433333333333333333333
No 294
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.42 E-value=1.1e+02 Score=23.45 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=37.8
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010313 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.|.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456677776542 3344555555566667788888887766555665555556666666633
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.33 E-value=20 Score=30.03 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=6.4
Q ss_pred HhcCcHHHHHHHHH
Q 010313 414 FRCNAVDKLANFVK 427 (513)
Q Consensus 414 ~~~~~~~~a~~~~~ 427 (513)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 34455544444444
No 296
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.85 E-value=37 Score=21.90 Aligned_cols=47 Identities=2% Similarity=-0.043 Sum_probs=32.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC
Q 010313 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG 204 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 204 (513)
.++.+++.+++..-+++++..+++..++|.-+...|---++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777666667766666666543
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.70 E-value=99 Score=23.88 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=30.7
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010313 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
.+.+.|++++. --..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34455555332 23344444445555556666666666555444555544455666666544
No 298
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.34 E-value=31 Score=28.74 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=10.4
Q ss_pred HHHhcccCCHHHHHHHHHH
Q 010313 163 IKFAGRINNVDLAADLFAE 181 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~ 181 (513)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344555666666555554
No 299
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.20 E-value=38 Score=21.89 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010313 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (513)
++.+++.++...-+++++-.+.+..+.| ..+..+|---++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444444554444555555555555554 3344444444444444
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.63 E-value=99 Score=23.69 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010313 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
+.|.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4456677765544 3344555555666677888888887776666777776677777776643
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.99 E-value=86 Score=26.00 Aligned_cols=47 Identities=0% Similarity=-0.121 Sum_probs=26.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHccCHH
Q 010313 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT--YNYLIAGYMTAWMWG 278 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~ 278 (513)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 60 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH
Confidence 45556677888888888877776665544321 112333444555544
No 302
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.65 E-value=50 Score=27.50 Aligned_cols=53 Identities=11% Similarity=-0.068 Sum_probs=26.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010313 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKT--FWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+...++.|+.+-+..+ .+.|..++... -.+.+......|+.+.+.++.+.+++
T Consensus 181 L~~A~~~~~~~~v~~L----l~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 181 LHIAARENRYDCVVLF----LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHHH----HHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344556665544333 33443332211 11344445566777777777777665
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.12 E-value=1.3e+02 Score=23.37 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC--hHHHHHHHHHHHH
Q 010313 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL--SDKCQSLFRDLKK 218 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~ 218 (513)
.+.++.-|...|+.++|...++++.........+...+..++-+.++ .+.+..++..+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 34566666666777777777666642211123333333344433222 3445555555554
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.90 E-value=1.3e+02 Score=23.35 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCc
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLANFVKRAESAGWR 435 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~ 435 (513)
.++.-|...|+.++|.+.++++... ......+..++..++-+.+ ..+.+..++..+...++-
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 5788888888899998888887432 1112233444555555532 244566677776655543
No 305
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=39.27 E-value=4.2e+02 Score=29.15 Aligned_cols=164 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC------------------------------------Ch
Q 010313 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG------------------------------------LS 206 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g------------------------------------~~ 206 (513)
+..+.+. +.+++.++|+++.+..+.....+-.+++.+.... ..
T Consensus 1115 ~~~~~k~-~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193 (1354)
T 3lxu_X 1115 CSQIVKC-ELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSAL 1193 (1354)
T ss_dssp HHHHTTS-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHHHHHHHH
T ss_pred HHHHhhc-ChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhhhHHHHH
Q ss_pred HHHHHHHHHHHHh---------CCCCCCHHHH------------HHHHHHHHh---------------cCChhHHHHHHH
Q 010313 207 DKCQSLFRDLKKE---------ANISPSIVTY------------NTLISVFGR---------------LLLVDHMEAAFQ 250 (513)
Q Consensus 207 ~~A~~~~~~m~~~---------~g~~p~~~~~------------~~li~~~~~---------------~g~~~~A~~~~~ 250 (513)
++.+++-++..+. .|.+-|...= +.|++++++ ....+.-.+.|.
T Consensus 1194 ~~ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~ 1273 (1354)
T 3lxu_X 1194 ERIVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYT 1273 (1354)
T ss_dssp HHHHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc
Q 010313 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330 (513)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (513)
++.+.=-.-|....-..+.--.+.|++..|++++.++.+.. |+...|..++..+...| ++....+.+.+.-...++.
T Consensus 1274 el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1274 EIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINRMMITAFPSS 1350 (1354)
T ss_dssp HHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHSCSS
T ss_pred HHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHhhhhhhCccc
No 306
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.21 E-value=2.5e+02 Score=26.44 Aligned_cols=38 Identities=11% Similarity=-0.147 Sum_probs=23.1
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010313 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
+.++.+.|+.++.+|.+.|..|....-..+..+.-..|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34577777777777777776655555455555544444
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.82 E-value=78 Score=28.61 Aligned_cols=96 Identities=16% Similarity=0.024 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010313 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|..-++.|. ..+..|+.+.+..+++.-..-...+..-++ .+...+..|+.+-+ +.+.+. |..++...-.+.+.
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v----~~Ll~~-g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTA----KYLASV-GEVHSLWHGQKPIH 89 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHH----HHHHHH-CCCCCCBTTBCHHH
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHH----HHHHHC-CCCccccCCCCHHH
Confidence 444444433 335566666555555431111111222222 33334445655433 333332 33333211223344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~ 257 (513)
..+..|+.+-+..+++.....|.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHhccccCC
Confidence 44566777666666665444343
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.04 E-value=2.1e+02 Score=25.29 Aligned_cols=237 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010313 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
..+|.-|...|+.++|...++++......|..+....-...=.+...-+.+-.++..+. .++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CC-----hhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHH--------------------hcCCC
Q 010313 345 SV-----TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF--------------------EHKTS 399 (513)
Q Consensus 345 g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------------------~~~~~ 399 (513)
.+ ++-....-.++.+....++.+. ..+......-..+.+.+.++... .....
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~---~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ 162 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCN---TYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSV 162 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCT---TTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCH---HHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCH
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHH
Q 010313 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV--EEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
..-..-.+.++.-|...|+.++|.+.++++....+. ....+..+..++-+.++. +...+++..+.+.|+-+......
T Consensus 163 eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 163 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_pred HHHHHHHhcCC--------HhHHHHHHHHHHHCCCCC
Q 010313 478 IMYYAYATCGQ--------RRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 478 ~li~~~~~~g~--------~~~A~~~~~~m~~~g~~p 506 (513)
-+.+.+....+ ++...+++..+...|+-|
T Consensus 242 Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 242 GYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCC
No 309
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.75 E-value=1.7e+02 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=16.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010313 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
-.+.+.|+-.+-+|++.| .|....-..++.+.-.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 345555555555565555 4444333333333333
No 310
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.39 E-value=57 Score=27.70 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=10.4
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010313 447 MYASQRRVEEMESVLKEME 465 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~ 465 (513)
..++.|+.+-+..+++.-.
T Consensus 231 ~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 231 MAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhCC
Confidence 3445566665555555443
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.16 E-value=79 Score=28.57 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCC
Q 010313 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL-LLVDHMEAAFQEIKDSNLS 258 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~ 258 (513)
-...++.-|...|+.++|.+.++++... .. -...++..+..++-+. ..-+.+..++..+.+.|+-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASP-SL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCG-GG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCc-cc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4567888888889999888888877521 11 1112223333332221 1234555666666665543
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.96 E-value=1.3e+02 Score=22.51 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCC
Q 010313 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN--AVDKLANFVKRAESAGW 434 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~ 434 (513)
.++.-|...|+.++|.+.++++... ......+..++..++-+.+ ..+.+..++..+...|+
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4777777778888888888776431 1111223344444554443 23456666666665553
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.87 E-value=1.9e+02 Score=24.43 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 010313 441 YHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~ 462 (513)
-...+..+.+.|+-++|..+|-
T Consensus 94 ~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 94 LKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhHHHHHHH
Confidence 3444455556666666665553
No 314
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=36.24 E-value=73 Score=28.40 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=11.0
Q ss_pred HHHHhcccCCHHHHHHHHHH
Q 010313 162 GIKFAGRINNVDLAADLFAE 181 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~ 181 (513)
.+...++.|+++.+..+++.
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444566676666555543
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.22 E-value=60 Score=26.06 Aligned_cols=15 Identities=33% Similarity=0.142 Sum_probs=7.6
Q ss_pred HHHccCHHHHHHHHH
Q 010313 271 YMTAWMWGKVEEIYQ 285 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~ 285 (513)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344555555555443
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.00 E-value=97 Score=26.11 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=11.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 010313 198 GAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
...++.|+.+.+..+++.+...
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~ 28 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWN 28 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 3344555655555555555443
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.88 E-value=1.8e+02 Score=24.06 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhc
Q 010313 383 LEEMEKSINDAFEH 396 (513)
Q Consensus 383 ~~~a~~~~~~~~~~ 396 (513)
++-|+.+|+.+.+.
T Consensus 88 LESAl~v~~~I~~e 101 (235)
T 3bu8_A 88 LESAINVLEMIKTE 101 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666655554
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.81 E-value=1.7e+02 Score=31.01 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcC
Q 010313 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSG 310 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g 310 (513)
-|..++..+-+.+.++.+.++-+...+.--.-| ...|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 588899999999999999988888775311112 346777777777655
No 319
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=35.58 E-value=1.5e+02 Score=23.29 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 010313 280 VEEIYQMM 287 (513)
Q Consensus 280 a~~~~~~m 287 (513)
+.++|+.+
T Consensus 142 ~~~~f~~~ 149 (183)
T 1s6c_A 142 VDVFFQKM 149 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33344443
No 320
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=35.31 E-value=57 Score=28.39 Aligned_cols=225 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH---------HcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHH
Q 010313 265 NYLIAGYMTAWMWGKVEEIYQMM---------KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m---------~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (513)
.+.+...+..|+.+++.++.... ...++......-.+.+...+..|+.+.+..+++. ...+......-.
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~g~ 93 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHV 93 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEECTTCC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCC
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 010313 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415 (513)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 415 (513)
+.+...+..|+.+-++..++.-......+...++ .+...+..|+.+ +++.+++.+..+.....-...+...+.
T Consensus 94 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t---~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---PLFNACVSGSWD----CVNLLLQHGASVQPESDLASPIHEAAR 166 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCC---HHHHHHHHTCHH----HHHHHHHTTCCSSCSCTTSCHHHHHHH
T ss_pred CHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHcCHHH----HHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_pred cCcHHHHHHHHHHHHhcCCcccHhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHhHH
Q 010313 416 CNAVDKLANFVKRAESAGWRLCRSLYH--SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW-IMYYAYATCGQRRKV 492 (513)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A 492 (513)
.|+.+ +++.+.+.|..++..... ..+...+..|+.+-+..+++. |..++..... +.+...++.|+.
T Consensus 167 ~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~g~t~L~~A~~~~~~--- 235 (285)
T 3d9h_A 167 RGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----GADVNQGKGQDSPLHAVVRTASE--- 235 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT----TCCTTCCBTTBCHHHHHHHTTCH---
T ss_pred cCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC----CCCCCCCCCCCCHHHHHHHcCCH---
Q ss_pred HHHHHHHHHCCCCCCCCC
Q 010313 493 NQVLGLMCKNGYDVPVNA 510 (513)
Q Consensus 493 ~~~~~~m~~~g~~p~~~t 510 (513)
++++.+.+.|..++...
T Consensus 236 -~~v~~Ll~~gad~~~~d 252 (285)
T 3d9h_A 236 -ELACLLMDFGADTQAKN 252 (285)
T ss_dssp -HHHHHHHHTTCCTTCCC
T ss_pred -HHHHHHHHCCCCCCCcC
No 321
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=35.24 E-value=24 Score=29.58 Aligned_cols=17 Identities=12% Similarity=-0.111 Sum_probs=8.9
Q ss_pred HhcCcHHHHHHHHHHHH
Q 010313 414 FRCNAVDKLANFVKRAE 430 (513)
Q Consensus 414 ~~~~~~~~a~~~~~~~~ 430 (513)
+..|+.+.+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34555555555555544
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.91 E-value=1.9e+02 Score=23.66 Aligned_cols=37 Identities=14% Similarity=-0.030 Sum_probs=20.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010313 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
+-++.+.|+-.+-+|++.|-.|....-..++.+.-.-
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDI 55 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDV 55 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 3456667777777777666555444444444444333
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.88 E-value=1.3e+02 Score=27.07 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=24.3
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcccHhh--HHHHHHHHHhcCCHHHHHHHHHH
Q 010313 413 YFRCNAVDKLANFVKRAESAGWRLCRSL--YHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
.+..|+.+-+ +.+.+.|..++... -.+-+...++.|+.+-+..+++.
T Consensus 218 A~~~g~~~~v----~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDVA----MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 4456666543 33444565544321 11233445566777777777664
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.47 E-value=2.4e+02 Score=26.74 Aligned_cols=133 Identities=14% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010313 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 179 ~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 257 (513)
+.-..+.|+| -...|-.-...+...|++++|-++--.-.+ |+-.+..|.+.+-.+=...|+..--+.+|.-+.+.|-
T Consensus 349 ~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~ 426 (494)
T 1bpo_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ 426 (494)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010313 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 258 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
.+..---.++..-...|+.+-.++++.+ |.-+++.=+.-+.+..+...|..+|.+.
T Consensus 427 -Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 427 -LNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred -cchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 325
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=34.46 E-value=2.9e+02 Score=25.69 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010313 194 NALLGAYMYNGL---SDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 194 ~~li~~~~~~g~---~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
..++...|..|+ .++|.+.|+......+- ......-..+...-.+. .++-..+++..... .+..--+.++.
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~--~~~~~~l~~~y~~s---~~~~ek~~ll~ 275 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFS---LSSTEKSQIEF 275 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS--HHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC--HHHHHHHHHHHhcC---CCHHHHHHHHH
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH---HHhccCCCcHHHHHHHHHHHHhc-C
Q 010313 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL---VKHHVDGKEFPLIRAMICAYSKC-S 345 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~-g 345 (513)
+++...+.+...++++......+.........+........-.+.|.+.+.. ........+......++...... .
T Consensus 276 aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~ 355 (419)
T 3rjo_A 276 ALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFS 355 (419)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCC
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcCC
Q ss_pred ChhHHHHHHHHHHhCCCCC
Q 010313 346 VTDRIKKIEALMRLIPEKE 364 (513)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~ 364 (513)
..+++.++...+......+
T Consensus 356 t~~~l~e~~~Ff~~~~~~~ 374 (419)
T 3rjo_A 356 TRTRLEEVKGFFSSLKENG 374 (419)
T ss_dssp SHHHHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHHHHHHhCcccc
No 326
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.25 E-value=1.5e+02 Score=22.24 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=30.3
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC--hHHHHHHHHHHHH
Q 010313 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL--SDKCQSLFRDLKK 218 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~ 218 (513)
...++.-|...|+.++|.+.++++.........+...+..++-+.+. .+.+..++..+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~ 71 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 71 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 34566666666777777777766642211123333334444443321 3455555655554
No 327
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=33.60 E-value=3.7e+02 Score=26.68 Aligned_cols=113 Identities=6% Similarity=-0.011 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010313 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY----AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
+.+.|..++....+.+ ..+......+-..+ ...+...++...+....... .+.....-.+....+.|+++.+.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777665432 12322222222222 22332344555555443322 22222333334444557666544
Q ss_pred HHHHHHHhCCCCC--cccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010313 352 KIEALMRLIPEKE--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 352 ~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
. .+..+.... ...|.| -+..++...|+.++|..+|.++..
T Consensus 306 ~---~~~~l~~~~~~~~r~~Y-W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 T---WLARLPMEAKEKDEWRY-WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H---HHHHSCTTGGGSHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H---HHHHccccccccHhHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4 444444322 122222 255666667777777777776654
No 328
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.22 E-value=1.9e+02 Score=23.30 Aligned_cols=111 Identities=7% Similarity=-0.137 Sum_probs=50.8
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...-...+..+.+.|.. .+...+.++.. .+|...-...+.++.+.++.+.. ..+.++.. .+|..+-...+
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 333333444444444442 23333333332 24555555555666666553332 33333332 25555555566
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
.++.+.|+.+ +...+.++.. .++...-...+.++.+.|+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH
Confidence 6666665533 2333333332 24555555555555555543
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.21 E-value=95 Score=23.81 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010313 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 33455555555544433344433334444444443
No 330
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.05 E-value=4.5e+02 Score=27.55 Aligned_cols=92 Identities=13% Similarity=0.075 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010313 194 NALLGAYMYNGL---SDKCQSLFRDLKKEA---NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 194 ~~li~~~~~~g~---~~~A~~~~~~m~~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
..++...|..|. .++|.+.|+...... .+.||.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 445666677665 456777777765421 1455543 22222333556666666677777663 344455667
Q ss_pred HHHHHHccCHHHHHHHHHHHHcC
Q 010313 268 IAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+.+++...+.+...++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77777777777777777776653
No 331
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.93 E-value=2.7e+02 Score=24.86 Aligned_cols=134 Identities=8% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---cC
Q 010313 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WM 276 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~ 276 (513)
+...|++++|++.|+.+... ..+.......+.+++.++++-..+ +....-|..-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~-----------i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR-----------ITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----------HHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHHHH-----------hheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 010313 277 WGKVEEIYQMMKAGPVMPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 354 (513)
.....++-..+-.-.++|. .-+....|..+.+.+++..|..+-+++.+.+..++... +|.++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~---------------qArkil 250 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE---------------QARKIK 250 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH---------------HHHHHH
Q ss_pred HHHHhCCCCCcc
Q 010313 355 ALMRLIPEKEYR 366 (513)
Q Consensus 355 ~~~~~~~~~~~~ 366 (513)
...++.......
T Consensus 251 ~~ce~~~~Da~e 262 (325)
T 3mv2_A 251 NKADSMASDAIP 262 (325)
T ss_dssp HHHHTSCCCSSC
T ss_pred HHHhcCCCCccc
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.56 E-value=98 Score=23.36 Aligned_cols=60 Identities=5% Similarity=0.130 Sum_probs=26.7
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010313 287 MKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34445544432 223333333333 3444555555555544444444444444555555443
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.30 E-value=1.1e+02 Score=20.35 Aligned_cols=61 Identities=8% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010313 285 QMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34666787776544 45556665543 455678888888776655566666666677766664
No 334
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=32.26 E-value=2.1e+02 Score=24.05 Aligned_cols=187 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010313 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
+...+..|+.+.+..+++. ...+......-.+.+...+..|+.+-++..++.-......+...++ -+...+..|+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t---~L~~A~~~~~ 81 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---PLFNACVSGS 81 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC---HHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHcCC
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHH--HHHHHHHhcCCHHHHHHH
Q 010313 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH--SKMVMYASQRRVEEMESV 460 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~ 460 (513)
.+ +++.+++.+..+....--...+...+..|+.+ +++.+.+.|..++..... ..+...+..|+.+-+..+
T Consensus 82 ~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (261)
T 2xai_A 82 WD----CVNLLLQHGASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153 (261)
T ss_dssp HH----HHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCC
Q 010313 461 LKEMENYKIDCSKKTFW-IMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510 (513)
Q Consensus 461 ~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 510 (513)
++. |..++..... +.+...++.|+. ++.+.+.+.|..++...
T Consensus 154 l~~----g~~~~~~~~g~t~Lh~A~~~~~~----~~v~~Ll~~gad~~~~d 196 (261)
T 2xai_A 154 LES----GADVNQGKGQDSPLHAVARTASE----ELACLLMDFGADTQAKN 196 (261)
T ss_dssp HHH----TCCTTCCBTTBCHHHHHHHHTCH----HHHHHHHHTTCCTTCCC
T ss_pred HHc----CCCCCCCCCCCChHHHHHHcCCH----HHHHHHHHcCCCCCCcC
No 335
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.24 E-value=3.5e+02 Score=26.06 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH--HHH-HHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010313 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV--RIM-RCIVSSYFRCNAVDKLANFVKRAESA 432 (513)
Q Consensus 369 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~li~~~~~~~~~~~a~~~~~~~~~~ 432 (513)
..+.++..|...+.++.|..+..+..-.....++. ..| --+...+.-.+++.+|.+.+......
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34478899999999999999988764321212221 122 22355666788999999988887643
No 336
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.67 E-value=2.1e+02 Score=23.30 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=13.3
Q ss_pred HHHHHHHccCHHHHHHHHHH
Q 010313 267 LIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~ 286 (513)
.+...++.|+.+.+..+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35556667777777777665
No 337
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.47 E-value=1.4e+02 Score=21.12 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010313 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
|.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555555555555555555555444
No 338
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.82 E-value=2.3e+02 Score=23.64 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=10.6
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 010313 199 AYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~ 218 (513)
..++.|+.+....+++.+..
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~ 30 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLT 30 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 34445566555555555544
No 339
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.37 E-value=78 Score=26.13 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCC
Q 010313 479 MYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
.+....+.|+.+-+..+++...+.|
T Consensus 213 ~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 213 ALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHcCcHHHHHHHHHhhhccC
Confidence 3444455666666555555444443
No 340
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.26 E-value=1.9e+02 Score=22.27 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=15.3
Q ss_pred HhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010313 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
.+.|.+...--..++..+...+..-.|.++++.+.++
T Consensus 19 ~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 19 KKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQK 55 (150)
T ss_dssp HHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 3344433333334444444444444455555555443
No 341
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.22 E-value=52 Score=20.76 Aligned_cols=22 Identities=14% Similarity=-0.044 Sum_probs=12.4
Q ss_pred ccCHHHHHHHHHHHHcCCCCCC
Q 010313 274 AWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
.|+.+.|+..+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4556666666666655544443
No 342
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.16 E-value=2.1e+02 Score=22.85 Aligned_cols=55 Identities=18% Similarity=-0.028 Sum_probs=33.9
Q ss_pred HHHccCHHHHHHHHHHHHcCCCC----------------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010313 271 YMTAWMWGKVEEIYQMMKAGPVM----------------PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~----------------p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
|-+.+++..|+..++.+....+. -| ...|+.+...|...|+.++|...+..--..
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 33455555555555555543332 13 356667777788888888888888765443
No 343
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.02 E-value=2.3e+02 Score=23.20 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=39.4
Q ss_pred HHHHHH---HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhccCC
Q 010313 267 LIAGYM---TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----LPRMEKIYELVKHHVDG 328 (513)
Q Consensus 267 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 328 (513)
+|+++. +..+.+.|+-++-+|.+.| .|.-..-..++-+.-..|. +..|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 444443 4568888888888888888 6666666666666666554 33455555555566654
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.52 E-value=1.1e+02 Score=23.54 Aligned_cols=36 Identities=6% Similarity=0.161 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010313 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
.-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344555555555444333444434444455554433
No 345
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=29.18 E-value=1.7e+02 Score=24.75 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010313 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (513)
++...+|+.+...+.....++.-+..++...+.. ..+..+|..+-....-..+..-|..++..+......+....+
T Consensus 91 ~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~ 170 (256)
T 2jul_A 91 KELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWA 170 (256)
T ss_dssp HHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc----c-----------CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010313 249 FQEIKDSNLSPNVFTYNYLIAGYMTA----W-----------MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~~~----g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
|+.+-..| -...++.-+...+... | .-+.+..+|+.+-..| -...+|.-++..+.+...+-
T Consensus 171 F~~~D~d~--dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~ 246 (256)
T 2jul_A 171 FNLYDINK--DGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIM 246 (256)
T ss_dssp HHHTCCSS--SSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHH
T ss_pred HHHhCCCC--CCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHH
Q ss_pred HHHHHHHHHH
Q 010313 314 RMEKIYELVK 323 (513)
Q Consensus 314 ~a~~~~~~~~ 323 (513)
++...|+.++
T Consensus 247 ~~l~~~d~~~ 256 (256)
T 2jul_A 247 NSMQLFENVI 256 (256)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHhhcccC
No 346
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.14 E-value=2.2e+02 Score=22.70 Aligned_cols=122 Identities=10% Similarity=-0.096 Sum_probs=66.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010313 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+...-...+.++.+.|.. ++...+..+.. .+|...-...+.++.+.++.+.... +.++.. .++..+-...+
T Consensus 58 ~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAVALGQIGDERAVEP-LIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHHHHHH-HHHHHc---CCCHHHHHHHH
Confidence 344444445555555554 33344444442 3676677777777777776543333 333433 35666666677
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010313 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.++.+.|+. ++...+..+.. .++...-...+.++.+.|.. ++...+..+.+
T Consensus 129 ~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 129 FALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 777777654 34444444444 25666666777777777653 34444444443
No 347
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=28.72 E-value=72 Score=27.33 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=11.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 010313 235 VFGRLLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g 256 (513)
..++.|+.+.+..+++...+.+
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHhhcc
Confidence 3345566666655665555444
No 348
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.30 E-value=2.4e+02 Score=22.98 Aligned_cols=44 Identities=16% Similarity=-0.022 Sum_probs=31.5
Q ss_pred HHHHHH---HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010313 267 LIAGYM---TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 267 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
+|+++. +..+.+.|+-.+-+|++.|-.|.-..-..++-+.-..|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 445544 45688899999999998887777666666666665555
No 349
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=28.24 E-value=5.8e+02 Score=27.31 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHH
Q 010313 136 LALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFR 214 (513)
Q Consensus 136 ~a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (513)
.+.++++.+.+.....+..+ ...|..|+.. .+.=+.++-.++++++.. ....-+.++++....|-.+...-+.+
T Consensus 289 ~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~-lR~~~~e~L~~l~~~~~~----~~~~r~~~lDal~~aGT~~a~~~i~~ 363 (1056)
T 1lsh_A 289 EIHTVLKHLVENNQLSVHEDAPAKFLRLTAF-LRNVDAGVLQSIWHKLHQ----QKDYRRWILDAVPAMATSEALLFLKR 363 (1056)
T ss_dssp HHHHHHHHHHHHCSSSCCTTHHHHHHHHHHH-HTTSCHHHHHHHHHHHTT----SHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCcchHHHHHHHHHH-HhcCCHHHHHHHHHHHhc----cHHHHHHHHHHhHhcCCHHHHHHHHH
Confidence 34455555554432222222 2333444443 344455555666666543 12233346666666666544444444
Q ss_pred HHH
Q 010313 215 DLK 217 (513)
Q Consensus 215 ~m~ 217 (513)
.+.
T Consensus 364 ~i~ 366 (1056)
T 1lsh_A 364 TLA 366 (1056)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 350
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.08 E-value=2.5e+02 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=15.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010313 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
++.+.|+-.+-+|++.|-.|....-..++.+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555444443333333333
No 351
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.52 E-value=5.5e+02 Score=26.86 Aligned_cols=160 Identities=9% Similarity=-0.066 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC----CCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010313 335 RAMICAYSKCSVTDRIKKIEALMRLIPE----KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410 (513)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 410 (513)
..++...|..|+.+-..++.+.|..... ..+.+.....+...-.+.|..++-..+++...... +..--..++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~----~~~ek~~ll 765 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ----LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC----SHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC----CHHHHHHHH
Confidence 4566777888877766666666654321 12333333234444445566665555555554432 122234577
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcC-CcccHhhHHHHHHHHHh-cCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHh
Q 010313 411 SSYFRCNAVDKLANFVKRAESAG-WRLCRSLYHSKMVMYAS-QRRVEEMESVLKEMEN---YKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~ 485 (513)
.+++...+.+...++++...... +++ ..... ++.+... ....+.|.+.+.+=-+ ..+..+...+..++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRK-QDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 77777888887777777665433 332 22333 3333332 2223445555433111 1122233345666666655
Q ss_pred cCCHhHHHHHHHHHH
Q 010313 486 CGQRRKVNQVLGLMC 500 (513)
Q Consensus 486 ~g~~~~A~~~~~~m~ 500 (513)
.-.-++-.+-+++..
T Consensus 844 ~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 844 RFSSEFELQQLEQFK 858 (909)
T ss_dssp TCCSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH
Confidence 444343334444443
No 352
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.48 E-value=1.9e+02 Score=21.35 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=27.0
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010313 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
+|+.+....+.|++..--.-+..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666655554444445555677788888888876665
No 353
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.14 E-value=95 Score=21.85 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010313 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 209 (513)
.+.++|.++++.++.+|. .+|..++.++...|+...|
T Consensus 51 t~~~~ar~Lld~L~~rG~---~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS---QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT---THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcCh---HHHHHHHHHHHHcCcHHHH
Confidence 355666666666665533 3556666666554554444
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.88 E-value=4.9e+02 Score=27.45 Aligned_cols=27 Identities=7% Similarity=-0.171 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010313 333 LIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 333 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
-|..++..+-+.+.++.+.+.-+...+
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 567777777777777666555444433
No 355
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.32 E-value=69 Score=21.86 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010313 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
.++|...|.+|+.+.++.|+. +|...+...+.-
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~D 48 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccC
Confidence 466667777776666655553 555555544433
No 356
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.27 E-value=1.9e+02 Score=21.75 Aligned_cols=56 Identities=5% Similarity=0.091 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010313 221 NISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 13 g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 13 GLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp TCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 55444322 22333444443 4455666666665555444555544455555555543
No 357
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.12 E-value=2.7e+02 Score=22.69 Aligned_cols=29 Identities=7% Similarity=-0.088 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010313 478 IMYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
+.+...+..|+.+.+.++++.+.+.|-.+
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 34455566777777777777777777654
No 358
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.11 E-value=1.2e+02 Score=25.00 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=7.8
Q ss_pred HHHhcCChhHHHHHHHH
Q 010313 235 VFGRLLLVDHMEAAFQE 251 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~ 251 (513)
..++.|+++....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555544444443
No 359
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.70 E-value=1.6e+02 Score=24.60 Aligned_cols=55 Identities=4% Similarity=-0.089 Sum_probs=31.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHc---cCHHHHHHHHHHH
Q 010313 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNV-------FTYNYLIAGYMTA---WMWGKVEEIYQMM 287 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~---g~~~~a~~~~~~m 287 (513)
.+...++.|+.+.+..+++.+.+.|..++. .-++.|..+ +.. |+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcC
Confidence 345556777887777777777766654432 233444333 334 6666565555543
No 360
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.54 E-value=1.2e+02 Score=23.75 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHhcCChh
Q 010313 278 GKVEEIYQM-MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH--VDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 278 ~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
+.+++-+.+ +.+.|++.+. --..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444444433 4556777654 3455666777777777888888888876 66566666555677888877654
No 361
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=25.28 E-value=1.7e+02 Score=21.37 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChH
Q 010313 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
+..|..-+++..+. .+|......++..+-.. ++.++++.+...+ .|+ ++.++...++...+.|-++
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 34444445444432 23444444444444333 4444444444332 343 2334444444455544443
No 362
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.21 E-value=39 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=15.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCCC
Q 010313 203 NGLSDKCQSLFRDLKKEANISPS 225 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~ 225 (513)
.-+++.|+..|.++...+.++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 34677888888887765455554
No 363
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.14 E-value=1.7e+02 Score=22.32 Aligned_cols=56 Identities=7% Similarity=-0.021 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010313 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 220 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 13 ~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 13 RGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred cCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 355555432 22333333444 456666666666655555555554555555555543
No 364
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.11 E-value=1.7e+02 Score=20.16 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=5.1
Q ss_pred ChHHHHHHHHHH
Q 010313 205 LSDKCQSLFRDL 216 (513)
Q Consensus 205 ~~~~A~~~~~~m 216 (513)
..++|..+++.+
T Consensus 51 ~~~kar~Lld~l 62 (94)
T 2p1h_A 51 QQQRAAMLIKMI 62 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344444444444
No 365
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=25.10 E-value=3e+02 Score=22.89 Aligned_cols=50 Identities=6% Similarity=0.098 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010313 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 258 (513)
+.+..+++.+.+. |+.-|..--...+....+.+.+ ....+-.++.+.|+.
T Consensus 93 e~i~~vl~~L~~~-g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 93 EFVEPILKKLRGQ-QLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 4445555555553 5544443334444444432222 244555666666664
No 366
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.02 E-value=2.9e+02 Score=22.78 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=42.9
Q ss_pred HHHHHHH---HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhccCC
Q 010313 266 YLIAGYM---TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN-----LPRMEKIYELVKHHVDG 328 (513)
Q Consensus 266 ~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 328 (513)
-+|+++. +..+.+.|+-++-+|++.|-.|.-..-..++-+.-..|. +..|...++.....|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3555554 456899999999999998877777777777777666553 33455555555565553
No 367
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.00 E-value=3.7e+02 Score=24.04 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010313 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
...++.=|...|+.++|.+.++++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 56677778888888888888887753
No 368
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=24.51 E-value=3.8e+02 Score=27.45 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010313 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC-LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414 (513)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (513)
.++...|+.|+.+-.. +.+.|... ..+.+.....+.....+.|. ++. +++..... ++..--..++.+++
T Consensus 591 ~~~~~a~~~~~~~~~~-a~~~f~~~--~~i~~~lr~~v~~~~~~~g~~~~~---l~~~~~~~----~~~~~~~~~l~al~ 660 (780)
T 1z5h_A 591 RVSRLYVMVDESYAEE-MSKLFKDF--DSAEPEMRSSIATAYALVTGDLKG---LLEKFRSV----DRDEDRVRIISAFG 660 (780)
T ss_dssp HHHHHHHHHCHHHHHH-HHTTGGGG--GGSCHHHHHHHHHHHHHHTCCHHH---HHHHHHSC----CSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHhc--CCCCHHHHHHHHHHHHHcCcHHHH---HHHHHhcC----CCHHHHHHHHHHhc
Confidence 4456666666544444 55555443 22333322223333333333 333 33332221 12223456677777
Q ss_pred hcCcHHHHHHHHHHHHh
Q 010313 415 RCNAVDKLANFVKRAES 431 (513)
Q Consensus 415 ~~~~~~~a~~~~~~~~~ 431 (513)
...+.+...++++....
T Consensus 661 ~~~~~~~~~~~l~~~~~ 677 (780)
T 1z5h_A 661 KLKSNTDLSTVYGMVEK 677 (780)
T ss_dssp TCCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhc
Confidence 77888777777777765
No 369
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.95 E-value=1.3e+02 Score=21.14 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010313 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246 (513)
Q Consensus 205 ~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 246 (513)
..++|.++++.+.++ | ...|..++.++...|+...|.
T Consensus 52 ~~~~ar~Lld~L~~r-G----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETR-G----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTS-C----TTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHc-C----hHHHHHHHHHHHHcCcHHHHH
Confidence 456666666666543 2 235666666665555544443
No 370
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.85 E-value=2.7e+02 Score=22.04 Aligned_cols=134 Identities=10% Similarity=-0.019 Sum_probs=66.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCcccHhh---HHHHHH
Q 010313 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFR-CNAVDKLANFVKRAESAGWRLCRSL---YHSKMV 446 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~---~~~li~ 446 (513)
.+...+..|+.+.-.++.+-+++.|..+. +..-.+.|..++.. ..+.....++.+.+.+.|..++... .++.+.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh 120 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTG
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHH
Confidence 45555566666655556666666654443 11112333332222 2334445566677777776665432 112222
Q ss_pred HHHhcCCH-HHHHHHHHHHHh-CCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010313 447 MYASQRRV-EEMESVLKEMEN-YKIDCSKKTFW--IMYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 447 ~~~~~g~~-~~A~~~~~~m~~-~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
..+..+.. ..-..+++-+.+ .|..++..... +-+....+.|+.+-..-+.+.+.+.+++.
T Consensus 121 ~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 22233322 344556666666 67666554332 45555566666655544455555555543
No 371
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=23.78 E-value=6.9e+02 Score=26.70 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=103.6
Q ss_pred chhHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHH
Q 010313 119 NGYAFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197 (513)
Q Consensus 119 ~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li 197 (513)
....|..+++.+.. ..+.-.+++..+.. ....-..+++++...|..+...-+.+.+....+........+.
T Consensus 309 ~~~~f~~Lv~~lR~~~~e~L~~l~~~~~~--------~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~ 380 (1056)
T 1lsh_A 309 APAKFLRLTAFLRNVDAGVLQSIWHKLHQ--------QKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVA 380 (1056)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHTT--------SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHhc--------cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34466777777765 44555566665432 2334456899999999998777777777665454444333443
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHH
Q 010313 198 GAYMYNGLSDKCQSLFRDLKKEANISPS-------IVTYNTLISVFGRLLL------VDHMEAAFQEIKDSNLSPNVFTY 264 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~-------~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~ 264 (513)
.+..-..--.+.++.+..+.+...++.+ ..+|..|+.-+|.... ++...+.+.+..+.+ |..--
T Consensus 381 ~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~---~~~~~ 457 (1056)
T 1lsh_A 381 STLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA---KEEEI 457 (1056)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT---CHHHH
T ss_pred HhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC---ChHHH
Confidence 3332222345666666666542112233 2367788888886531 233333344444432 55556
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcC-C---CCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHH
Q 010313 265 NYLIAGYMTAWMWGKVEEIYQMMKAG-P---VMPDTNTYLLLLRGYAHSG--NLPRMEKIYELVK 323 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~-g---~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~ 323 (513)
...|.++...|... ++..+...... + .......-...+.++.+.. +.+.+..++-.+.
T Consensus 458 ~~~LkaLGN~g~p~-~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~ 521 (1056)
T 1lsh_A 458 VLALKALGNAGQPN-SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIF 521 (1056)
T ss_dssp HHHHHHHHHHTCGG-GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCChh-HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHh
Confidence 66778888888764 44455444321 0 1112233344455544332 3345666555544
No 372
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.79 E-value=1.4e+02 Score=22.01 Aligned_cols=43 Identities=2% Similarity=-0.039 Sum_probs=28.2
Q ss_pred HHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010313 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+|+.+....+.++....-.-|......++++.|.++...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555566555444333344556788999999998888753
No 373
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=22.55 E-value=78 Score=20.87 Aligned_cols=32 Identities=13% Similarity=0.389 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010313 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
.++|.+.|.+|..+.++.|+ .+|...+..++.
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~ 45 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMIIN 45 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHcc
Confidence 46666677776666555544 255555554443
No 374
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.41 E-value=3e+02 Score=22.00 Aligned_cols=27 Identities=11% Similarity=-0.219 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010313 262 FTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
.-|+.+...|.+.|+.++|++.|..--
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 446667777888999999999886543
No 375
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.86 E-value=1.3e+02 Score=22.54 Aligned_cols=46 Identities=0% Similarity=0.060 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010313 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444444445555666666666554444555544455566665544
No 376
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.81 E-value=2.3e+02 Score=21.78 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010313 221 NISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 12 g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 12 GLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp TCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 55555432 22333443443 4555666666666655555555555555556665544
No 377
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.35 E-value=1.6e+02 Score=21.97 Aligned_cols=44 Identities=16% Similarity=-0.000 Sum_probs=20.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010313 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
+..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33333344444555555555544444444444444555555443
No 378
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.09 E-value=5.6e+02 Score=24.66 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH--HHHHH-HHHHHHHccCHHHHHHHHHHHHcC
Q 010313 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL-SPNV--FTYNY-LIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~-li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
...+|.++..|...+.++.|..+..+..--.. .+|. ..|.. +...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35678888888888999999988887742100 1111 22222 234555678888888888877653
No 379
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.70 E-value=3.1e+02 Score=21.50 Aligned_cols=13 Identities=0% Similarity=0.043 Sum_probs=7.3
Q ss_pred CcHHHHHHHHHHH
Q 010313 417 NAVDKLANFVKRA 429 (513)
Q Consensus 417 ~~~~~a~~~~~~~ 429 (513)
|++-+|.++|+..
T Consensus 46 g~yfeaHEvLEe~ 58 (161)
T 2ijq_A 46 GEFHESHDCFEDE 58 (161)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 5555555555555
No 380
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.68 E-value=95 Score=24.75 Aligned_cols=54 Identities=11% Similarity=-0.066 Sum_probs=36.3
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 010313 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (513)
....++.++..++...-+++++.++.+....| ..+..+|---++.+++...+..
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~r 163 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVR 163 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 33446777777777777777777777777777 4566777777777666544433
No 381
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.41 E-value=1.4e+02 Score=22.54 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010313 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444444555555555555444455555555555555554
No 382
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.31 E-value=1.1e+02 Score=23.18 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010313 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556666666666778888888887766667666666777888777654
No 383
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.01 E-value=1.1e+02 Score=24.45 Aligned_cols=53 Identities=2% Similarity=-0.027 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh
Q 010313 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS 206 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 206 (513)
|....++.++..++...-+++++..+++....|.-+..+|---++.+++..-+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33455677777777777777777777777777766666776666666664433
Done!