BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010314
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 22/229 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G V +GP+ GKSTLLR IAG G++F+ + ++ P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L L+V E + + L+L G QR N V + + L D K + G
Sbjct: 86 LYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG------- 136
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+R+RV I R LV P V +DEPL +LD+ + M + + +L + +
Sbjct: 137 --GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 357
E L D+I +L G G+ L L H+ F + SP +FL
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLE-LYHYPADRFVAGFIGSPKMNFL 242
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 22/229 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G V +GP+ GKSTLLR IAG G++F+ + ++ P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L L+V E + + L+L G QR N V + + L D K + G
Sbjct: 86 LYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG------- 136
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+R+RV I R LV P V +DEPL +LD+ + M + + +L + +
Sbjct: 137 --GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 357
E L D+I +L G G+ L L H+ F + SP +FL
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLE-LYHYPADRFVAGFIGSPKMNFL 242
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 22/229 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G V +GP+ GKSTLLR IAG G++F+ + ++ P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L L+V E + + L+L G QR N V + + L D K + G
Sbjct: 86 LYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG------- 136
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+R+RV I R LV P V +D+PL +LD+ + M + + +L + +
Sbjct: 137 --GQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 357
E L D+I +L G G+ L L H+ F + SP +FL
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLE-LYHYPADRFVAGFIGSPKMNFL 242
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYG--SYGFVERETT 192
G ++GP+ SGKSTLL IAG P S ++Y F +E+P + G V +
Sbjct: 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY---FDEKDVTELPPKDRNVGLVFQNWA 85
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252
L +TV + + + L+ + ++ + ++ + +KL+ + + L G+
Sbjct: 86 LYPHMTVYKNIAFPLELR-----KAPREEIDKKVREVAKMLHIDKLLNRYPWQ--LSGGQ 138
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEV 311
++RV IAR LV P VL +DEPL +LD++ L + LK+L G T ++ + E
Sbjct: 139 QQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY-VTHDQAEA 197
Query: 312 FGLFDRICLLSNGNTLFFG 330
+ DRI ++ G L G
Sbjct: 198 LAMADRIAVIREGEILQVG 216
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 31/207 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP--YGSYGFVERETT 192
G M ++GP+ SGK+T+LR IAG L + G+V++ G + +++P + G V +
Sbjct: 41 GEMVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKRNVGLVFQNYA 97
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA--------MSLSDYANKLIGGHCY 244
L +TV + + F + K V +D + A M L YAN+ +
Sbjct: 98 LFQHMTVYDNV---------SFGLREKRVPKDEMDARVRELLRFMRLESYANR------F 142
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 303
L G+++RV +AR L RP VL DEP +D+ + ++++ G T +F
Sbjct: 143 PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF- 201
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFG 330
+ E + DR+ +L GN FG
Sbjct: 202 VTHDQEEALEVADRVLVLHEGNVEQFG 228
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYG--SYGFVERETT 192
G V++GP+ GK+T LR IAG P R+Y F + + +P + V +
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY---FGDRDVTYLPPKDRNISMVFQSYA 93
Query: 193 LIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
+ +TV E + + + + P ++ V A + + + N+ Y L G
Sbjct: 94 VWPHMTVYENIAFPLKIKKFPKDEIDKR--VRWAAELLQIEELLNR------YPAQLSGG 145
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311
+R+RV +AR +V+ P VL +DEPL +LD+ + M +KKL + E
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205
Query: 312 FGLFDRICLLSNGNTLFFG 330
+ DRI +++ G L G
Sbjct: 206 MTMGDRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYG--SYGFVERETT 192
G V++GP+ GK+T LR IAG P R+Y F + + +P + V +
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY---FGDRDVTYLPPKDRNISMVFQSYA 94
Query: 193 LIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
+ +TV E + + + + P ++ V A + + + N+ Y L G
Sbjct: 95 VWPHMTVYENIAFPLKIKKFPKDEIDKR--VRWAAELLQIEELLNR------YPAQLSGG 146
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311
+R+RV +AR +V+ P VL +DEPL +LD+ + M +KKL + E
Sbjct: 147 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 206
Query: 312 FGLFDRICLLSNGNTLFFG 330
+ DRI +++ G L G
Sbjct: 207 MTMGDRIAVMNRGQLLQIG 225
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%)
Query: 126 VKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFVNGAKSEMP 180
VK+ +G + G ++GP+ GK+T L +AG P S +Y +V VN +
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK-- 73
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
Y G V + L +TV E + F + + + +D + + + A KL+
Sbjct: 74 YREVGMVFQNYALYPHMTVFENI---------AFPLRARRISKDEVEK-RVVEIARKLLI 123
Query: 241 GHCYMKG---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST- 296
+ + L G+++RV +AR LV +P VL DEPL +LD+ ++M +K L
Sbjct: 124 DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356
G T ++ + E + RI + + G + +G N F + +P +F
Sbjct: 184 GITSVY-VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM-FVASFIGNPPTNF 241
Query: 357 LR 358
LR
Sbjct: 242 LR 243
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 24/239 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG---------SYGF 186
G +++GP+ GK+T LR IAG L +R G++++ P
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAG-LEEPSR--GQIYIGDKLVADPEKGIFVPPKDRDIAM 85
Query: 187 VERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V + L +TV + + + L ++P ++ V + + L++ N+
Sbjct: 86 VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR--VREVAELLGLTELLNR------KP 137
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTI 304
+ L G+R+RV + R +V +P V +DEPL +LD+ + M LKKL G T ++ +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-V 196
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 363
E + DRI +++ G G +N F + SP +FL AI T+
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANT-FVAGFIGSPPMNFLDAIVTE 254
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 38/234 (16%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM-YGEVFVNGAKSEM 179
+D V+ N PG++ ++G SGKSTL+ I + P R+ E+ V K +
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
G V +ET L S T++E L + R++ +D I A K+
Sbjct: 415 LRGHISAVPQETVLF-SGTIKENLKWG-----------REDATDDEIVE------AAKIA 456
Query: 240 GGHCYMKGLP---------------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
H ++ LP G+++R+ IAR LV +P VL +D+ +D ++
Sbjct: 457 QIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEK 516
Query: 285 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
++ LK+ + GCT + T + L D+I +L G FG L+H
Sbjct: 517 RILDGLKRY-TKGCTTFIITQKIPTAL--LADKILVLHEGKVAGFGTHKELLEH 567
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 24/212 (11%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------- 177
+K+ N G IMGP+ SGKST+L I G L GEV+++ K+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSD 233
++ GFV ++ LI LT E + + + G +RK +E A
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+AN H + L G+++RV IAR L P ++ D+P + LDS + +M LKKL
Sbjct: 138 FAN-----HKPNQ-LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
Query: 294 -ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ + + FG +RI L +G
Sbjct: 192 NEEDGKTVVVVTHDINVARFG--ERIIYLKDG 221
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 32/243 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGE----------VFVNGAKSEMP--YG 182
G V++GP+ GK+T LR IAG P ++Y E VFV + ++ +
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQ 91
Query: 183 SYGFVERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG 241
SY L TV + + + L ++P ++ V + + L++ N+
Sbjct: 92 SYA-------LYPHXTVYDNIAFPLKLRKVPKQEIDKR--VREVAEXLGLTELLNR---- 138
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTL 300
+ L G+R+RV + R ++ RP V DEPL +LD+ + LKKL G T
Sbjct: 139 --KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTT 196
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
++ + E DRI + + G G N F + SP +FL A
Sbjct: 197 IY-VTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNT-FVAGFIGSPPXNFLDAT 254
Query: 361 NTD 363
TD
Sbjct: 255 ITD 257
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 9/204 (4%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183
+V+K N + G + V++GP+ SGKST LR + GE+ ++G + +
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTN 73
Query: 184 YGFVERETTLI-GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
V E ++ + ++ + L ++ + AM L D H
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 133
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
Y L G+ +RV IAR L M P ++ DEP LD ++ +K+LA+ G T++
Sbjct: 134 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 193
Query: 303 TINQS--STEVFGLFDRICLLSNG 324
++ + EV DR+ + G
Sbjct: 194 VTHEMGFAREV---GDRVLFMDGG 214
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 9/204 (4%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183
+V+K N + G + V++GP+ SGKST LR + GE+ ++G + +
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTN 94
Query: 184 YGFVERETTLI-GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
V E ++ + ++ + L ++ + AM L D H
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 154
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
Y L G+ +RV IAR L M P ++ DEP LD ++ +K+LA+ G T++
Sbjct: 155 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214
Query: 303 TINQS--STEVFGLFDRICLLSNG 324
++ + EV DR+ + G
Sbjct: 215 VTHEMGFAREV---GDRVLFMDGG 235
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGE---VFVNGAKSEMPYG-SYGFVERETTLIG 195
I+GP+ +GK+T +R IAG +P + +Y + V NG P G V + L
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
+LT E + + L + + + VE+ + + N + + L G+++R
Sbjct: 96 NLTAFENIAF-PLTNMKMSKEEIRKRVEEVAKILDIHHVLNH------FPRELSGGQQQR 148
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V +AR LV P +L +DEP +LD+ +K++ S L ++ ++F +
Sbjct: 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA 208
Query: 316 DRICLLSNGNTLFFGE 331
DR+ +L G + G+
Sbjct: 209 DRVGVLVKGKLVQVGK 224
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------- 177
+K+ N G IMGP+ SGKST+L I G L GEV+++ K+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSD 233
++ GFV ++ LI LT E + + + G +RK +E A
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+AN H + L G+++RV IAR L P ++ D+P LDS + +M LKKL
Sbjct: 138 FAN-----HKPNQ-LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 294 -ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ + + FG +RI L +G
Sbjct: 192 NEEDGKTVVVVTHDINVARFG--ERIIYLKDG 221
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
G ++ G SGKSTLL+ +AG + ++ G+V +G + + G+ R I
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKK------GYEIRRNIGIA 83
Query: 196 -----SLTVREYLYYSALLQLPGFFCQRKNV--VEDAIHAMSLSDYANKLIGGHCYMKGL 248
E ++ + F+ R V V+ A+ + L D+ + ++ G
Sbjct: 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGL-DFDSFKDRVPFFLSG- 141
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
GE+RRV IA +V P +L +DEPL LD ++ ++K + G T++ I+
Sbjct: 142 --GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-ISHDI 198
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIM 349
V DR+ +L G +F G + L+ + F ++
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML 239
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
G ++ G SGKSTLL+ +AG + ++ G+V +G + + G+ R I
Sbjct: 35 GECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKK------GYEIRRNIGIA 85
Query: 196 -----SLTVREYLYYSALLQLPGFFCQRKNV--VEDAIHAMSLSDYANKLIGGHCYMKGL 248
E ++ + F+ R V V+ A+ + L D+ + ++ G
Sbjct: 86 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGL-DFDSFKDRVPFFLSG- 143
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
GE+RRV IA +V P +L +DEPL LD ++ ++K + G T++ I+
Sbjct: 144 --GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-ISHDI 200
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIM 349
V DR+ +L G +F G + L+ + F ++
Sbjct: 201 ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML 241
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 23/218 (10%)
Query: 120 RYS-DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
RY+ D V+K N G + V++G SGK+TLL+ +AG L + GE+F++G+ ++
Sbjct: 20 RYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA----GEIFLDGSPAD 75
Query: 179 MPY-----GSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLS 232
P+ Y F + +IG+ TV E + +S L++ G + + ++ + + LS
Sbjct: 76 -PFLLRKNVGYVFQNPSSQIIGA-TVEEDVAFS--LEIMGLDESEMRKRIKKVLELVGLS 131
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
A L G+++R+ IA L L +DEP+ LD S + L+
Sbjct: 132 GLA------AADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLES 185
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L + G ++ ++ E D I +SNG F G
Sbjct: 186 LKNEGKGIILVTHE--LEYLDDMDFILHISNGTIDFCG 221
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 12/196 (6%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGE---VFVNGAKSEMPYG-SYGFVERETTLIG 195
I+GP+ +GK+T +R IAG +P + +Y + V NG P G V + L
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
+LT E + + L + + + VE+ + + N + + L +++R
Sbjct: 96 NLTAFENIAF-PLTNMKMSKEEIRKRVEEVAKILDIHHVLNH------FPRELSGAQQQR 148
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V +AR LV P +L +DEP +LD+ +K++ S L ++ ++F +
Sbjct: 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA 208
Query: 316 DRICLLSNGNTLFFGE 331
DR+ +L G + G+
Sbjct: 209 DRVGVLVKGKLVQVGK 224
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
+VV KDL KR +++K + G + ++GP +GK+T LR I+ + S
Sbjct: 14 GAVVVKDLR-----KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 164 ARMYGEVFVNGAKS-EMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ G V V G E P+ ++ E ++ EYL + A GF+
Sbjct: 69 S---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA-----GFYASSS 120
Query: 220 NVVEDAIH-AMSLSDYANKLIGG-HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277
+ +E+ + A ++ K+ Y KG+ R++ IAR L++ P + +DEP
Sbjct: 121 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMV----RKLLIARALMVNPRLAILDEPTSG 176
Query: 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
LD ++A + LK+ + G T+L + + + EV L DRI L+ NG + G
Sbjct: 177 LDVLNAREVRKILKQASQEGLTILVS-SHNMLEVEFLCDRIALIHNGTIVETG 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK-SEMPYGSY--GFVERET 191
G VI+GP +GK+ L IAG +P S R + ++G +++ + FV +
Sbjct: 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGR----ILLDGKDVTDLSPEKHDIAFVYQNY 81
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG---L 248
+L + V++ L F R ++D + D A L H + L
Sbjct: 82 SLFPHMNVKKNLE----------FGMRMKKIKDPKRVL---DTARDLKIEHLLDRNPLTL 128
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
GE++RV +AR LV P +L +DEPL LD + L L + I
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 309 TEVFGLFDRICLLSNGNTLFFGE 331
TE + DRI ++ +G + G+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGK 211
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP--YGSYGFVERETTLIGS 196
V++GP +GKS L IAG + GEV +NGA + +P GFV ++ L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
L+V + Y +R + + + L D + G GER+RV
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSG---------GERQRV 135
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316
+AR LV++P +L +DEPL +D + ++M L+ + + + E L D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 317 RICLLSNGNTLFFGE 331
+ ++ NG + G+
Sbjct: 196 EVAVMLNGRIVEKGK 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 21/190 (11%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+T++ KG R+S + + + G +I+GP SGK+TLLRAI+G LP+S G +
Sbjct: 9 ITLSGKGYERFSLENIN----LEVNGEKVIILGPNGSGKTTLLRAISGLLPYS----GNI 60
Query: 171 FVNG--AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
F+NG + Y Y E IG +TV + +Y +L G +++ + + A
Sbjct: 61 FINGMEVRKIRNYIRYSTNLPEAYEIG-VTVNDIVYLYE--ELKGL---DRDLFLEMLKA 114
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+ L + +++ Y L G+ VR + L +P ++ +DEP ++D+ ++
Sbjct: 115 LKLGE---EILRRKLYK--LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR 169
Query: 289 TLKKLASTGC 298
+K+ G
Sbjct: 170 YIKEYGKEGI 179
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 24/212 (11%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------- 177
+K+ N G I GP+ SGKST L I G L GEV+++ K+
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSD 233
++ GFV ++ LI LT E + + + G +RK +E A
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEER 137
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+AN H + L G+++RV IAR L P ++ DEP LDS + + LKKL
Sbjct: 138 FAN-----HKPNQ-LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 294 -ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ + + FG +RI L +G
Sbjct: 192 NEEDGKTVVVVTHDINVARFG--ERIIYLKDG 221
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 32/210 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSYGFVERET 191
G + I+G A SGKSTL + I R Y G+V ++G ++ ++ R+
Sbjct: 31 GEVIGIVGRAGSGKSTLTKLIQ-------RFYIPENGQVLIDG--HDLALADPNWLRRQV 81
Query: 192 TLI--GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYM- 245
++ ++ + + + L PG VE I+A L+ D+ ++L G+ +
Sbjct: 82 GVVLQDNVLLNRSIIDNISLANPGMS------VEKVIYAAKLAGAHDFISELREGYNTIV 135
Query: 246 ----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 136 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI 194
Query: 302 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
++ ST DRI ++ G + G+
Sbjct: 195 IIAHRLST--VKNADRIIVMEKGKIVEQGK 222
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 19/234 (8%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAK----- 176
+K+++G +L ++T I+G + SGKST++ A+ LP + R+ G V G
Sbjct: 21 IKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMR 80
Query: 177 ----SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
++ + V + + T++ ++ ++ G ++E A + +
Sbjct: 81 EEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMV 140
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLK 291
+ + + Y L G ++RV IA L++ P VL +DEP LD ++ A ++ + +
Sbjct: 141 RLNPEAVL-NSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKE 199
Query: 292 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFP 345
TL+F + + L D++ ++ GN + + T Q F N P
Sbjct: 200 LKKMLKITLIFVTHDIAVAA-ELADKVAVIYGGNLVEYNST---FQIFKNPLHP 249
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 32/210 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSYGFVERET 191
G + I+G + SGKSTL + I R Y G+V ++G ++ ++ R+
Sbjct: 29 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDG--HDLALADPNWLRRQV 79
Query: 192 TLI--GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYM- 245
++ ++ + + + L PG VE I+A L+ D+ ++L G+ +
Sbjct: 80 GVVLQDNVLLNRSIIDNISLANPGMS------VEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 246 ----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI 192
Query: 302 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
++ ST DRI ++ G + G+
Sbjct: 193 IIAHRLST--VKNADRIIVMEKGKIVEQGK 220
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 32/210 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSYGFVERET 191
G + I+G + SGKSTL + I R Y G+V ++G ++ ++ R+
Sbjct: 35 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDG--HDLALADPNWLRRQV 85
Query: 192 TLI--GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYM- 245
++ ++ + + + L PG VE I+A L+ D+ ++L G+ +
Sbjct: 86 GVVLQDNVLLNRSIIDNISLANPGMS------VEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 246 ----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI 198
Query: 302 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
++ ST DRI ++ G + G+
Sbjct: 199 IIAHRLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 32/210 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSYGFVERET 191
G + I+G + SGKSTL + I R Y G+V ++G ++ ++ R+
Sbjct: 31 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDG--HDLALADPNWLRRQV 81
Query: 192 TLI--GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYM- 245
++ ++ + + + L PG VE I+A L+ D+ ++L G+ +
Sbjct: 82 GVVLQDNVLLNRSIIDNISLANPGMS------VEKVIYAAKLAGAHDFISELREGYNTIV 135
Query: 246 ----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 136 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI 194
Query: 302 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
++ ST DRI ++ G + G+
Sbjct: 195 IIAHRLST--VKNADRIIVMEKGKIVEQGK 222
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 20/220 (9%)
Query: 121 YSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKS 177
YSD +K N G +T I+G GKSTL + G L P S R+ +F N
Sbjct: 17 YSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI---LFDN---K 70
Query: 178 EMPYGSYGFVE-RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
+ Y G ++ RE+ I L+ +++ Q F + ED I D A
Sbjct: 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV--DNAL 128
Query: 237 KLIG-GHCYMKGLPC---GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
K G H K C G+++RV IA LVM P VL +DEP LD + +M L +
Sbjct: 129 KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 293 LAST-GCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 330
+ G T++ I ++ L+ D + ++ G + G
Sbjct: 189 MQKELGITII--IATHDIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
G + GP GK+TLL+ I+ L + GE+ NG G F+ E +
Sbjct: 35 GNVVNFHGPNGIGKTTLLKTISTYL---KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR 91
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
++V +YL A+ L G KN + DA+ ++ + D KL G L G RR
Sbjct: 92 KISVEDYL--KAVASLYGVKVN-KNEIMDALESVEVLDLKKKL--GE-----LSQGTIRR 141
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVS 282
V++A L++ + +D+P+ +D S
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDS 168
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 33/219 (15%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-----K 176
S+++++ + A P ++ GP+ GKST+ + +A GE+ ++G
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNIS 70
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---- 232
E GFV +++ ++ T+RE L Y L G + ED + L+
Sbjct: 71 LENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTD-----EDLWQVLDLAFARS 120
Query: 233 ------DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
D N +G + G+R+R+ IAR + P +L +DE LDS S ++
Sbjct: 121 FVENMPDQLNTEVGERGVK--ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 287 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
L L G T L ++ ST V D+I + G
Sbjct: 179 QKALDSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQ 214
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 32/210 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSYGFVERET 191
G + I+G + SGKSTL + I R Y G+V ++G ++ ++ R+
Sbjct: 29 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDG--HDLALADPNWLRRQV 79
Query: 192 TLI--GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYM- 245
++ ++ + + + L PG VE I+A L+ D+ ++L G+ +
Sbjct: 80 GVVLQDNVLLNRSIIDNISLANPGMS------VEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 246 ----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ ++
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVII 193
Query: 302 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
S+ + DRI ++ G + G+
Sbjct: 194 IAARLSTVKN---ADRIIVMEKGKIVEQGK 220
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 32/210 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSYGFVERET 191
G + I+G + SGKSTL + I R Y G+V ++G ++ ++ R+
Sbjct: 35 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDG--HDLALADPNWLRRQV 85
Query: 192 TLI--GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYM- 245
++ ++ + + + L PG VE I+A L+ D+ ++L G+ +
Sbjct: 86 GVVLQDNVLLNRSIIDNISLANPGMS------VEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 246 ----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ ++
Sbjct: 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVII 199
Query: 302 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
S+ + DRI ++ G + G+
Sbjct: 200 IAARLSTVKN---ADRIIVMEKGKIVEQGK 226
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 32/210 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSYGFVERET 191
G + I+G + SGKSTL + I R Y G+V ++G ++ ++ R+
Sbjct: 35 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDG--HDLALADPNWLRRQV 85
Query: 192 TLI--GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYM- 245
++ ++ + + + L PG VE I+A L+ D+ ++L G+ +
Sbjct: 86 GVVLQDNVLLNRSIIDNISLANPGMS------VEKVIYAAKLAGAHDFISELREGYNTIV 139
Query: 246 ----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
GL G+R+R+ IAR LV P +L D+ LD S ++M + K+ G T++
Sbjct: 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVI 198
Query: 302 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
++ ST DRI ++ G + G+
Sbjct: 199 IIAHRLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 22/203 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVER 189
PG ++GP+ GKST++ A+ R + + GE+F++G++ E V +
Sbjct: 1104 PGQTLALVGPSGCGKSTVV-ALLERFYDT--LGGEIFIDGSEIKTLNPEHTRSQIAIVSQ 1160
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-- 247
E TL ++ E + Y P + VE+A ++ ++ +L G G
Sbjct: 1161 EPTLF-DCSIAENIIYGLD---PSSVTMAQ--VEEAARLANIHNFIAELPEGFETRVGDR 1214
Query: 248 ---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
L G+++R+ IAR LV P +L +DE LD+ S ++ L + A G T +
Sbjct: 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIA 1273
Query: 305 NQSSTEVFGLFDRICLLSNGNTL 327
++ +T + D I ++SNG +
Sbjct: 1274 HRLNTVMNA--DCIAVVSNGTII 1294
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
+L + N L+G L G+++R+ IAR LV P +L +DE LD+ S ++
Sbjct: 539 TLPNGYNTLVGDRGTQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA 596
Query: 290 LKKLASTGCTLL 301
L K A T++
Sbjct: 597 LDKAAKGRTTII 608
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 32/217 (14%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY---- 184
+PG ++GP+ +GKST+LR + R Y G + ++G S++ S
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLF-------RFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
G V ++T L T+ + + Y G + VE A A + D G+
Sbjct: 131 GVVPQDTVLFND-TIADNIRY-------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 245 MKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
G L GE++RV IAR ++ P ++ +DE LD+ + + +L K+ + T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336
++ ++ ST V D+I ++ +G + G A L
Sbjct: 243 IVVA-HRLSTVVNA--DQILVIKDGCIVERGRHEALL 276
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVERE 190
G ++G + GKST+++ + R M G VF++G + + G V +E
Sbjct: 1059 GQTLALVGSSGCGKSTVVQLLE-RFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGL 248
L ++ E + Y ++ + + E IH SL D N +G L
Sbjct: 1116 PILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ--L 1172
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+++R+ IAR LV +PH+L +DE LD+ S ++ L K A G T + ++ S
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLS 1231
Query: 309 TEVFGLFDRICLLSNG 324
T D I ++ NG
Sbjct: 1232 T--IQNADLIVVIQNG 1245
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 42/228 (18%)
Query: 120 RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA 175
R +++K N G ++G + GKST ++ + R+Y G V ++G
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-------RLYDPLDGMVSIDGQ 452
Query: 176 KSEMPYGSY-----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDAI 226
Y G V +E L + T+ E + Y R++V +E A+
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYG-----------REDVTMDEIEKAV 500
Query: 227 HAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+ D+ KL + G L G+++R+ IAR LV P +L +DE LD+
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNGN 325
S ++ L K A G T + ++ ST +V FD ++ GN
Sbjct: 561 SEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVERE 190
G ++G + GKST+++ + R M G VF++G + + G V +E
Sbjct: 1059 GQTLALVGSSGCGKSTVVQLLE-RFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGL 248
L ++ E + Y ++ + + E IH SL D N +G L
Sbjct: 1116 PILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ--L 1172
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+++R+ IAR LV +PH+L +DE LD+ S ++ L K A G T + ++ S
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLS 1231
Query: 309 TEVFGLFDRICLLSNG 324
T D I ++ NG
Sbjct: 1232 T--IQNADLIVVIQNG 1245
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 42/228 (18%)
Query: 120 RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA 175
R +++K N G ++G + GKST ++ + R+Y G V ++G
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-------RLYDPLDGMVSIDGQ 452
Query: 176 KSEMPYGSY-----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDAI 226
Y G V +E L + T+ E + Y R++V +E A+
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYG-----------REDVTMDEIEKAV 500
Query: 227 HAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+ D+ KL + G L G+++R+ IAR LV P +L +DE LD+
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNGN 325
S ++ L K A G T + ++ ST +V FD ++ GN
Sbjct: 561 SEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 43/216 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA--KSEMPYG---SYGFVERE 190
G M I+GP +GKSTLLR + G L S +GE + G S P + + +
Sbjct: 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQY 93
Query: 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH-----AMSLSDYANKLIGGHCYM 245
+ L +V E + + P Q + ++ + A++ DY +++ G
Sbjct: 94 SELAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLALAQRDY--RVLSG---- 144
Query: 246 KGLPCGERRRVRIARELVM------RPHVLFIDEP-----LYHLDSVSALLMMVTLKKLA 294
GE++RV++AR L P LF+DEP LYH LL +T ++
Sbjct: 145 -----GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPL 199
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+ C +L +N ++ DRI LL+ G + G
Sbjct: 200 AV-CCVLHDLNLAALYA----DRIMLLAQGKLVACG 230
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 21/201 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPYGSYGF 186
G I+G + SGKSTLL I G L A G+VF+ G + S + GF
Sbjct: 30 GEFVSIIGASGSGKSTLL-YILGLL--DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGF 86
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
V + LI LT E + ++ + +K E + +S +KL +
Sbjct: 87 VFQFHYLIPELTALE----NVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELS 142
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
G GE++RV IAR L P +LF DEP +LDS + +M K+ G +++ ++
Sbjct: 143 G---GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
Query: 307 SSTEVFGLFDRICLLSNGNTL 327
E+ L R + +G +
Sbjct: 200 R--ELAELTHRTLEMKDGKVV 218
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 38/218 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEV--FVNGAKSEMPYGSYGFVE---- 188
G +T+I+GP SGKSTL+ I G L R+Y E N +E+ + YG V
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH--YGIVRTFQT 90
Query: 189 ----RETTLIGSLTVREY---------LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA 235
+E T++ +L + E L+Y + + + +VE A + +
Sbjct: 91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKK------WIPKEEEMVEKAFKILEFLKLS 144
Query: 236 NKLIGGHCYMKG---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
H Y + L G+ + V I R L+ P ++ +DEP+ + A + + +
Sbjct: 145 ------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L + G T L I V D + ++ NG + G
Sbjct: 199 LKAKGITFLI-IEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 38/218 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEV--FVNGAKSEMPYGSYGFVE---- 188
G +T+I+GP SGKSTL+ I G L R+Y E N +E+ + YG V
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH--YGIVRTFQT 90
Query: 189 ----RETTLIGSLTVREY---------LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA 235
+E T++ +L + E L+Y + + + +VE A + +
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKK------WIPKEEEMVEKAFKILEFLKLS 144
Query: 236 NKLIGGHCYMKG---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
H Y + L G+ + V I R L+ P ++ +DEP+ + A + + +
Sbjct: 145 ------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L + G T L I V D + ++ NG + G
Sbjct: 199 LKAKGITFLI-IEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 30/165 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG +T ++GP SGKST+ + + G++ ++G +P + ++ R+ +
Sbjct: 42 PGEVTALVGPNGSGKSTVAALLQNLYQPTG---GQLLLDG--KPLPQYEHRYLHRQVAAV 96
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP----- 249
G ++ +L + + +K +E+ A S G H ++ GLP
Sbjct: 97 GQ---EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS-------GAHSFISGLPQGYDT 146
Query: 250 ----------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
G+R+ V +AR L+ +P VL +D+ LD+ S L
Sbjct: 147 EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 191
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 38/218 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEV--FVNGAKSEMPYGSYGFVE---- 188
G +T+I+GP SGKSTL+ I G L R+Y E N +E+ + YG V
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH--YGIVRTFQT 90
Query: 189 ----RETTLIGSLTVREY---------LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA 235
+E T++ +L + E L+Y + + + +VE A + +
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKK------WIPKEEEMVEKAFKILEFLKLS 144
Query: 236 NKLIGGHCYMKG---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
H Y + L G+ + V I R L+ P ++ +D+P+ + A + + +
Sbjct: 145 ------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L + G T L I V D + ++ NG + G
Sbjct: 199 LKAKGITFLI-IEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVER 189
PG ++G SGKSTLL A RL ++ GE+ ++G E ++G + +
Sbjct: 46 PGQRVGLLGRTGSGKSTLLSAFL-RLLNTE---GEIQIDGVSWDSITLEQWRKAFGVIPQ 101
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANK----LIGGHCY 244
+ I S T R+ L +A Q V D + S + + K L+ G C
Sbjct: 102 K-VFIFSGTFRKNLDPNA-----AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV 155
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
L G ++ + +AR ++ + +L +DEP HLD V+ ++ TLK+ A CT++
Sbjct: 156 ---LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILC- 210
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 357
++ E D+ ++ + L L H+ F + SP +FL
Sbjct: 211 -EARIEAMLECDQFLVIEENKVRQYDSILE-LYHYPADRFVAGFIGSPKMNFL 261
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 237 KLIG----GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
KL+G Y+ L GE++RV IAR L +P VL +DEP LD ++ ++ L
Sbjct: 147 KLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDS 206
Query: 293 LASTGCTL-LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L+ + TL + E+ F +I LL +G ++ G
Sbjct: 207 LSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQG 245
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 21/202 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGA-----KSEMPYGS--YGF 186
PG + I+G + GK+TLLR +AG P S GE+ ++G + +P G+
Sbjct: 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDS----GEISLSGKTIFSKNTNLPVRERRLGY 84
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+ +E L LTV + Y L G Q + +E + +S+ A + Y
Sbjct: 85 LVQEGVLFPHLTVYRNIAY-GLGNGKGRTAQERQRIEAMLELTGISELAGR------YPH 137
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++R +AR L P ++ +DEP LD + + + L + G + +F ++
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVF-VS 196
Query: 306 QSSTEVFGLFDRICLLSNGNTL 327
E DRI ++ G L
Sbjct: 197 HDREEALQYADRIAVMKQGRIL 218
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 32/190 (16%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY---GEVFVNGA 175
++ + + +KS N + GT ++G SGKST+ + + R Y G++ + G
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-------RFYDAEGDIKI-GG 80
Query: 176 KSEMPYGS------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM 229
K+ Y G V ++T L LY G V A +
Sbjct: 81 KNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILY--------GKLDATDEEVIKATKSA 132
Query: 230 SLSDYANKL------IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
L D+ L I G+ MK L GER+R+ IAR L+ P ++ DE LDS +
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 284 LLMMVTLKKL 293
L ++ L
Sbjct: 192 YLFQKAVEDL 201
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI-------AGRLP---HSARMYGEVFVNGAKSEMPYGSYG 185
G++T ++GP+ SGKST+L + +G + H R V++ +S++ G
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWL---RSKI-----G 452
Query: 186 FVERETTLIGSLTVREYLYYSA--LLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGH 242
V +E L S ++ E + Y A + QR V +A+ + + N ++G
Sbjct: 453 TVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 511
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
+ L G+++R+ IAR L+ P +L +DE LD+ + L+ L +L G T+L
Sbjct: 512 GVL--LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLV 568
Query: 303 TINQSST 309
+ ST
Sbjct: 569 IAHHLST 575
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 38/242 (15%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +I ++ EY Y S + CQ +E+ I + D N
Sbjct: 110 IMP----GTIKE--NIIAGVSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 152
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD ++ + + + KL +
Sbjct: 153 VLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-D 354
+L T S E D+I +L G++ F+G T + LQ+ F +M S D
Sbjct: 210 NKTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNL-QPDFSSKLMGCDSFD 264
Query: 355 HF 356
F
Sbjct: 265 QF 266
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 15/182 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPY---GSYGFVERE 190
G++T ++GP+ SGKST+L + RL A G + ++G + P G V +E
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL-RLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 191 TTLIGSLTVREYLYYSA--LLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKG 247
L S ++ E + Y A + QR V +A+ + + N ++G +
Sbjct: 427 PILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-- 483
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L G+++R+ IAR L+ P +L +DE LD+ + L+ L +L G T+L ++
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 308 ST 309
ST
Sbjct: 543 ST 544
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +I ++ EY Y S + CQ + + ++ N
Sbjct: 110 IMP----GTIKE--NIISGVSYDEYRYKSVVKA-----CQLQQDI------TKFAEQDNT 152
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 153 VLGEGGVTLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 210 NKTRILVT---SKMEHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 23/213 (10%)
Query: 124 KVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------ 174
+ +++ N +L G + ++G + +GKSTL+R + L G V V+G
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTE--GSVLVDGQELTTL 72
Query: 175 AKSEMPYG--SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
++SE+ G + + L+ S TV + + L L + V +SL
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTV----FGNVALPLELDNTPKDEVKRRVTELLSLV 128
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+K Y L G+++RV IAR L P VL DE LD + ++ LK
Sbjct: 129 GLGDK---HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 293 LAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324
+ G T+L ++ V + D + ++SNG
Sbjct: 186 INRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 37/261 (14%)
Query: 93 EGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTV-IMGPAKSGKST 151
EG V + G V ++++T T G+ D + +P TV ++G + SGKST
Sbjct: 330 EGKRVIERATG-DVEFRNVTFTYPGR----DVPALRNINLKIPAGKTVALVGRSGSGKST 384
Query: 152 LLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREY 202
+ I R Y GE+ ++G E S V + L TV
Sbjct: 385 IASLIT-------RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANN 436
Query: 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVR 257
+ Y+ Q R+ + E A A ++ D+ NK+ G + G L G+R+R+
Sbjct: 437 IAYARTEQ-----YSREQIEEAARMAYAM-DFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317
IAR L+ +L +DE LD+ S + L +L +L+ S+ E D
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK---ADE 547
Query: 318 ICLLSNGNTLFFGETLACLQH 338
I ++ +G + G L+H
Sbjct: 548 IVVVEDGVIVERGTHNDLLEH 568
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L G+++RV IAR L M P VL DEP LD ++ +++LA G T++ ++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G + +E + G ++ EY Y S + CQ + + ++ N
Sbjct: 110 IMP----GTI-KENIIFG-VSYDEYRYKSVVKA-----CQLQQDI------TKFAEQDNT 152
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 153 VLGEGGVTLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 210 NKTRILVT---SKMEHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-------HSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G + +E + G ++ EY Y S + CQ + + ++ N
Sbjct: 110 IMP----GTI-KENIIFG-VSYDEYRYKSVVKA-----CQLQQDI------TKFAEQDNT 152
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 153 VLGEGGVTLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 210 NKTRILVT---SKMEHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +I ++ EY Y S + CQ + + ++ N
Sbjct: 110 IMP----GTIKE--NIIRGVSYDEYRYKSVVKA-----CQLQQDI------TKFAEQDNT 152
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 153 VLGEGGVTLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 210 NKTRILVT---SKMEHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 23/213 (10%)
Query: 124 KVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------ 174
+ +++ N +L G + ++G + +GKSTL+R + L G V V+G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTE--GSVLVDGQELTTL 95
Query: 175 AKSEMPYG--SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
++SE+ G + + L+ S TV + + L L + V +SL
Sbjct: 96 SESELTKARRQIGXIFQHFNLLSSRTV----FGNVALPLELDNTPKDEVKRRVTELLSLV 151
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+K Y L G+++RV IAR L P VL D+ LD + ++ LK
Sbjct: 152 GLGDK---HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 293 LAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324
+ G T+L ++ V + D + ++SNG
Sbjct: 209 INRRLGLTILLITHEXDV-VKRICDCVAVISNG 240
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 17/198 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
G + ++G GKSTLL + G + G++ V Y S GFV + +
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGI---HRPIQGKIEV--------YQSIGFVPQFFSSPF 79
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
+ +V + + + F + + + A+ A+ DY N L G+R+
Sbjct: 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL---DYLNLTHLAKREFTSLSGGQRQL 136
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGL 314
+ IAR + ++ +DEP LD + +++ L LA S T++FT +Q + +V +
Sbjct: 137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAI 195
Query: 315 FDRICLLSNGNTLFFGET 332
++ LL+ N FGET
Sbjct: 196 ANKTLLLNKQN-FKFGET 212
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 23/213 (10%)
Query: 124 KVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------ 174
+ +++ N +L G + ++G + +GKSTL+R + L G V V+G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTE--GSVLVDGQELTTL 95
Query: 175 AKSEMPYG--SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
++SE+ G + + L+ S TV + + L L + V +SL
Sbjct: 96 SESELTKARRQIGMIFQHFNLLSSRTV----FGNVALPLELDNTPKDEVKRRVTELLSLV 151
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+K Y L G+++RV IAR L P VL D+ LD + ++ LK
Sbjct: 152 GLGDK---HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 293 LAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324
+ G T+L ++ V + D + ++SNG
Sbjct: 209 INRRLGLTILLITHEMDV-VKRICDCVAVISNG 240
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 91
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G + +E + G ++ EY Y S + CQ +E+ I + D N
Sbjct: 92 IMP----GTI-KENIIFG-VSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 134
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD ++ + + + KL +
Sbjct: 135 VLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340
+L T S E D+I +L G++ F+G T + LQ+
Sbjct: 192 NKTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNLQ 232
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 79
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G + +E + G ++ EY Y S + CQ +E+ I + D N
Sbjct: 80 IMP----GTI-KENIIFG-VSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 122
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD ++ + + + KL +
Sbjct: 123 VLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340
+L T S E D+I +L G++ F+G T + LQ+
Sbjct: 180 NKTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNLQ 220
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 37/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +IG ++ EY Y S + CQ + + ++ N
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYKSVVKA-----CQLQQDI------TKFAEQDNT 151
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 152 VLGEGGVTLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 208
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 209 NKTRILVT---SKMEHLRKADKILILHQGSSYFYG-TFSELQ 246
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 37/224 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQNSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +IG ++ EY Y S + CQ +E+ I + D N
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 151
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD ++ + + + KL +
Sbjct: 152 VLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339
+L T S E D+I +L G++ F+G T + LQ+
Sbjct: 209 NKTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNL 248
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 35/223 (15%)
Query: 120 RYSDK---VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFV 172
+Y+D ++K N G +G + GKSTL+ I R Y G++ +
Sbjct: 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-------RFYDVTSGQILI 400
Query: 173 NGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH 227
+G + GS G V+++ L S TV+E + LL P + VVE A
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKE----NILLGRPT--ATDEEVVEAAKM 453
Query: 228 AMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
A + D+ L G+ G L G+++R+ IAR + P +L +DE LD S
Sbjct: 454 ANA-HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
++ L L+ TL+ ++ ST D+I ++ NG+
Sbjct: 513 ESIIQEALDVLSKDRTTLIVA-HRLSTITHA--DKIVVIENGH 552
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 37/224 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQNSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +IG ++ EY Y S + CQ +E+ I + D N
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 151
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD ++ + + + KL +
Sbjct: 152 VLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339
+L T S E D+I +L G++ F+G T + LQ+
Sbjct: 209 NKTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNL 248
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----AKSEM 179
V+K + PG ++GP SGK+T++ + R R G++ V+G K
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDR--GQILVDGIDIRKIKRSS 426
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
S G V ++T L S TV+E L Y PG + +++A + L
Sbjct: 427 LRSSIGIVLQDTILF-STTVKENLKYGN----PGATDEE---IKEAAKLTHSDHFIKHLP 478
Query: 240 GGHCYM-----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
G+ + + L G+R+ + I R + P +L +DE ++D+
Sbjct: 479 EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 37/224 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 79
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +IG ++ EY Y S + CQ +E+ I + D N
Sbjct: 80 IMP----GTIKE--NIIG-VSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 121
Query: 238 LIG-GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAS 295
++G G + G G+R R+ +AR + + +D P +LD ++ + + + KL +
Sbjct: 122 VLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 178
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339
+L T S E D+I +L G++ F+G T + LQ+
Sbjct: 179 NKTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNL 218
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLY 276
+E+A D+ NK+ G + G L G+R+R+ IAR L+ +L +DE
Sbjct: 450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
LD+ S + L +L +L+ S+ E D I ++ +G
Sbjct: 510 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIE---QADEIVVVEDG 554
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 58/221 (26%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA ++ + +K RRY I GP GKSTL+RAIA
Sbjct: 446 GAKILLNKTQLRLKRARRYG------------------ICGPNGCGKSTLMRAIA----- 482
Query: 163 SARMYGEVFVNGAKSEMPYGSYG---FVERETTLIGSLT-VREYLYYSALLQLPGFFCQR 218
NG P +VE + S T V ++++ S +
Sbjct: 483 ----------NGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV--------GT 524
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
K ++D + +D ++I + L G + ++ +AR ++ +L +DEP HL
Sbjct: 525 KEAIKDKLIEFGFTD---EMIA--MPISALSGGWKMKLALARAVLRNADILLLDEPTNHL 579
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319
D+V+ ++ L T T+ S VF D +C
Sbjct: 580 DTVNVAWLVNYLNTCGITSITI------SHDSVF--LDNVC 612
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
I H ++GL G++ ++ +A RPH++ +DEP +LD S + LK+
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 36/241 (14%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G + +E + G ++ EY Y S + CQ +E+ I + D N
Sbjct: 110 IMP----GTI-KENIIFG-VSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 152
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST 296
++G L G++ ++ +AR + + +D P +LD ++ + + + KL +
Sbjct: 153 VLGEGGIT--LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 210
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-DH 355
+L T S E D+I +L G++ F+G T + LQ+ F +M S D
Sbjct: 211 KTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNL-QPDFSSKLMGCDSFDQ 265
Query: 356 F 356
F
Sbjct: 266 F 266
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L GE +RV IA L+ + H F DEP +LD L + +++LA+ G +L
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 24/188 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + I+GP GK+T ++ +AG P ++ ++ V + G V + I
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKI 427
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
S + Y + LL+ G VED L GE +
Sbjct: 428 DSSKLNSNFYKTELLKPLGIIDLYDRNVED-----------------------LSGGELQ 464
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
RV IA L+ + +DEP +LD L + ++ L + + +
Sbjct: 465 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 524
Query: 315 FDRICLLS 322
DR+ +
Sbjct: 525 SDRLIVFE 532
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L GE +RV IA L+ + H F DEP +LD L + +++LA+ G +L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 24/188 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + I+GP GK+T ++ +AG P ++ ++ V + G V + I
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKI 441
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
S + Y + LL+ G VED L GE +
Sbjct: 442 DSSKLNSNFYKTELLKPLGIIDLYDRNVED-----------------------LSGGELQ 478
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
RV IA L+ + +DEP +LD L + ++ L + + +
Sbjct: 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538
Query: 315 FDRICLLS 322
DR+ +
Sbjct: 539 SDRLIVFE 546
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 41/251 (16%)
Query: 94 GAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTV-IMGPAKSGKSTL 152
G A ++ G V KD+T T +GK +K S +++P TV ++G + SGKST+
Sbjct: 331 GKYEAERVNG-EVDVKDVTFTYQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTI 385
Query: 153 LRAIAGRLPHSARMY----GEVFVNGA-----KSEMPYGSYGFVERETTLIGSLTVREYL 203
R Y G + ++G K + V + L T+ +
Sbjct: 386 ANLFT-------RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNI 437
Query: 204 YYSALLQLPGFFCQRKNVVEDAI---HAM----SLSDYANKLIGGHCYMKGLPCGERRRV 256
Y+A G + + + +E A HAM ++ + +IG + L G+R+RV
Sbjct: 438 AYAA----EGEYTREQ--IEQAARQAHAMEFIENMPQGLDTVIGENG--TSLSGGQRQRV 489
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316
IAR L+ VL +DE LD+ S + L +L L+ S+ E D
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE---QAD 546
Query: 317 RICLLSNGNTL 327
I ++ G +
Sbjct: 547 EILVVDEGEII 557
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 37/241 (15%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
MP G ++ +IG ++ EY Y S + CQ +E+ I + D N
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYRSVIKA-----CQ----LEEDISKFAEKD--NI 151
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST 296
++G L G++ ++ +AR + + +D P +LD ++ + + + KL +
Sbjct: 152 VLGEGGIT--LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-DH 355
+L T S E D+I +L G++ F+G T + LQ+ F +M S D
Sbjct: 210 KTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQNL-QPDFSSKLMGCDSFDQ 264
Query: 356 F 356
F
Sbjct: 265 F 265
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
I H ++GL G++ ++ +A RPH++ +DEP +LD S + LK+
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 58/221 (26%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA ++ + +K RRY I GP GKSTL RAIA
Sbjct: 446 GAKILLNKTQLRLKRARRYG------------------ICGPNGCGKSTLXRAIA----- 482
Query: 163 SARMYGEVFVNGAKSEMPYGSYG---FVERETTLIGSLT-VREYLYYSALLQLPGFFCQR 218
NG P +VE + S T V ++++ S +
Sbjct: 483 ----------NGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV--------GT 524
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
K ++D + +D + I + L G + ++ +AR ++ +L +DEP HL
Sbjct: 525 KEAIKDKLIEFGFTD---EXIAXP--ISALSGGWKXKLALARAVLRNADILLLDEPTNHL 579
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319
D+V+ ++ L T T+ S VF D +C
Sbjct: 580 DTVNVAWLVNYLNTCGITSITI------SHDSVF--LDNVC 612
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
I H ++GL G++ ++ +A RPH++ +DEP +LD S + LK+
Sbjct: 887 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 58/221 (26%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA ++ + +K RRY I GP GKSTL RAIA
Sbjct: 440 GAKILLNKTQLRLKRARRYG------------------ICGPNGCGKSTLXRAIA----- 476
Query: 163 SARMYGEVFVNGAKSEMPYGSYG---FVERETTLIGSLT-VREYLYYSALLQLPGFFCQR 218
NG P +VE + S T V ++++ S +
Sbjct: 477 ----------NGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV--------GT 518
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
K ++D + +D + I + L G + ++ +AR ++ +L +DEP HL
Sbjct: 519 KEAIKDKLIEFGFTD---EXIAXP--ISALSGGWKXKLALARAVLRNADILLLDEPTNHL 573
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319
D+V+ ++ L T T+ S VF D +C
Sbjct: 574 DTVNVAWLVNYLNTCGITSITI------SHDSVF--LDNVC 606
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL +I G + ++K N G + +MGP +GKSTL + +AG P G
Sbjct: 7 RDLWASIDG-----ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD-PEYTVERG 60
Query: 169 EVFVNG------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
E+ ++G + E + + +T+ +L L L + V
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLR----LALQAKLGREVGVA 116
Query: 223 E---DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
E A+ L D+ + + +G GE++R I + LV+ P +DE LD
Sbjct: 117 EFWTKVKKALELLDWDESYLSRYLN-EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 135 PGTMTVIMGPAKSGKST---LLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET 191
PG +T ++GP SGKST LL+ + + GE V + + V +E
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL-HTQVAAVGQEP 102
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG---- 247
L G + RE + Y R +E+ I A+++ A+ I G + +G
Sbjct: 103 LLFGR-SFRENIAYG---------LTRTPTMEE-ITAVAMESGAHDFISG--FPQGYDTE 149
Query: 248 -------LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
L G+R+ V +AR L+ +P +L +D+ LD+ + L
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL 193
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%)
Query: 135 PGTMTVIMGPAKSGKST---LLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET 191
PG +T ++GP SGKST LL+ + + GE V + + V +E
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL-HTQVAAVGQEP 102
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG---- 247
L G + RE + Y R +E+ I A+++ A+ I G + +G
Sbjct: 103 LLFGR-SFRENIAYG---------LTRTPTMEE-ITAVAMESGAHDFISG--FPQGYDTE 149
Query: 248 -------LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
L G+R+ V +AR L+ +P +L +D LD+ + L
Sbjct: 150 VGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 5 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 50
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 24 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%)
Query: 135 PGTMTVIMGPAKSGKST---LLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET 191
PG +T ++GP SGKST LL+ + + GE V + + V +E
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL-HTQVAAVGQEP 102
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG---- 247
L G + RE + Y R +E+ I A+++ A+ I G + +G
Sbjct: 103 LLFGR-SFRENIAYG---------LTRTPTMEE-ITAVAMESGAHDFISG--FPQGYDTE 149
Query: 248 -------LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
L G+R+ V +AR L+ +P +L +D LD+ + L
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 68/310 (21%)
Query: 110 DLTVTIKGKRRYSDKVVKS--------SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL- 160
DL+ +K K +++ K++K NG A G + I+GP GK+T R + G +
Sbjct: 261 DLSKDLKTKMKWT-KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT 319
Query: 161 PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKN 220
+ E + K + + +Y TV++YL +N
Sbjct: 320 ADEGSVTPEKQILSYKPQRIFPNY-----------DGTVQQYL---------------EN 353
Query: 221 VVEDAIHAMS-LSDYANKLIGGHCYMKG----LPCGERRRVRIARELVMRPHVLFIDEPL 275
+DA+ S + K + H ++ L GE +++ IA L + +D+P
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413
Query: 276 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
+LD ++ +K++ + F I+ + + DRI +F GE
Sbjct: 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII-------VFKGEP--- 463
Query: 336 LQHFSNAGFPC-PI-MQSPSDHFLRAINTDF-----------DRIIAMCKSWQDDHGDFS 382
AG P+ +++ + FLR + F ++I + Q + GD+
Sbjct: 464 ----EKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYY 519
Query: 383 SVNMDTAVAI 392
S+ + T +I
Sbjct: 520 SMVLSTQGSI 529
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 132 YALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERE 190
+++P G + ++G GKS+LL A+ L ++ G V + G+ + +P ++
Sbjct: 26 FSIPEGALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVAIKGSVAYVPQQAW------ 76
Query: 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG--- 247
I + ++RE + + L+ P + I A +L L G G
Sbjct: 77 ---IQNDSLRENILFGCQLEEPYY--------RSVIQACALLPDLEILPSGDRTEIGEKG 125
Query: 248 --LPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
L G+++RV +AR + + D+PL +D+
Sbjct: 126 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
T IGS + L + LLQ P F R VV+DA N + G + GL CG
Sbjct: 166 TTIGSKVMENGLLFKELLQTPNF---RITVVDDADTVELCGALKNIVAVGAGFCDGLRCG 222
Query: 252 ERRRVRIAR 260
+ + + R
Sbjct: 223 DNTKAAVIR 231
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
L GE++ + I R L RP +L DEP L + + ++K+ G T+L
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+E+ + A+ L + + I + L GE +RV IA L+ F DEP +LD
Sbjct: 139 LEEVVKALELENVLEREI------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 282 SALLMMVTLKKLASTGCTLL 301
L +++L+ G ++L
Sbjct: 193 QRLNAARAIRRLSEEGKSVL 212
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ +I GPA GKST + +A +L +SA + G++
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 110 DLTVTIKGKRRYSDKVVKS-SNGYAL-PGTMTVIMGPAKSGKSTLL-------RAIAGRL 160
+LT+ I+ R ++++ S +G + G TVI G +GKSTLL RAI +
Sbjct: 205 ELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM 264
Query: 161 PHSARMYGE 169
P + R Y E
Sbjct: 265 PGTTRDYIE 273
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSS------NGYALPGTMTVIMGPAKSGKSTLLRAI 156
GA V W D+ K+ + V+ S G P ++ GP +GK+ L RA+
Sbjct: 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAV 74
Query: 157 A 157
A
Sbjct: 75 A 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,981,449
Number of Sequences: 62578
Number of extensions: 476022
Number of successful extensions: 1343
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 141
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)